Query 037713
Match_columns 610
No_of_seqs 797 out of 4287
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-119 4E-124 1006.3 69.5 601 3-608 187-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6E-119 1E-123 979.4 66.2 574 4-610 124-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.5E-71 5.3E-76 619.4 51.4 581 3-605 86-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2E-64 4.3E-69 553.2 54.8 505 3-524 370-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-63 4.7E-68 544.9 56.3 464 5-477 408-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 8.5E-58 1.8E-62 498.7 43.5 487 66-604 84-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.4E-28 1.2E-32 275.7 51.9 454 6-471 400-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-27 4.2E-32 271.2 52.8 454 5-470 365-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.3E-31 2.8E-36 216.0 8.4 106 477-600 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 8.2E-20 1.8E-24 209.9 51.9 411 43-468 274-738 (1157)
11 PRK11447 cellulose synthase su 99.9 8.3E-20 1.8E-24 209.9 51.6 454 6-469 31-665 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 7E-21 1.5E-25 186.0 34.1 380 69-461 116-510 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-18 3.6E-23 187.1 44.7 390 72-469 130-570 (615)
14 PRK09782 bacteriophage N4 rece 99.9 2.5E-17 5.4E-22 181.3 49.3 444 15-470 56-706 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 3.9E-19 8.5E-24 173.9 29.9 417 42-469 52-484 (966)
16 PRK11788 tetratricopeptide rep 99.9 5.4E-19 1.2E-23 181.1 31.9 280 78-401 44-344 (389)
17 PRK11788 tetratricopeptide rep 99.9 5.5E-19 1.2E-23 181.1 30.2 300 147-478 42-355 (389)
18 PRK09782 bacteriophage N4 rece 99.8 1.6E-16 3.5E-21 174.9 47.7 437 17-473 122-743 (987)
19 PRK10049 pgaA outer membrane p 99.8 1E-16 2.3E-21 176.3 45.4 398 38-443 15-463 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-16 3.9E-21 171.3 44.0 387 43-440 132-575 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.4E-21 176.2 42.7 390 73-470 19-456 (765)
22 PRK15174 Vi polysaccharide exp 99.8 1.5E-16 3.3E-21 171.3 41.7 348 50-440 17-385 (656)
23 PRK14574 hmsH outer membrane p 99.8 3.7E-15 7.9E-20 161.0 43.1 416 48-468 44-511 (822)
24 PRK15174 Vi polysaccharide exp 99.8 5.5E-16 1.2E-20 167.0 36.7 329 107-471 44-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 1.4E-14 2.9E-19 156.7 46.8 423 13-442 44-519 (822)
26 KOG4422 Uncharacterized conser 99.7 2.3E-13 4.9E-18 128.5 36.4 396 7-436 120-590 (625)
27 KOG2002 TPR-containing nuclear 99.7 7.5E-14 1.6E-18 144.5 34.3 443 19-470 252-745 (1018)
28 KOG2003 TPR repeat-containing 99.7 1.3E-14 2.7E-19 137.6 26.0 439 9-456 207-709 (840)
29 KOG2002 TPR-containing nuclear 99.7 2.7E-12 5.9E-17 133.2 39.9 360 106-472 271-677 (1018)
30 KOG0495 HAT repeat protein [RN 99.6 7.3E-11 1.6E-15 117.5 42.7 454 12-482 385-890 (913)
31 PF13429 TPR_15: Tetratricopep 99.6 5.2E-15 1.1E-19 143.7 9.7 257 208-468 14-275 (280)
32 KOG2076 RNA polymerase III tra 99.6 9.7E-12 2.1E-16 128.4 33.4 328 118-480 152-522 (895)
33 KOG2076 RNA polymerase III tra 99.6 1.4E-10 3.1E-15 119.9 39.4 436 17-457 153-721 (895)
34 KOG0547 Translocase of outer m 99.5 3.4E-11 7.4E-16 116.0 31.1 386 72-467 118-563 (606)
35 KOG4422 Uncharacterized conser 99.5 6.2E-11 1.3E-15 112.3 31.6 347 35-401 204-587 (625)
36 KOG1155 Anaphase-promoting com 99.5 8.4E-11 1.8E-15 112.7 31.4 331 135-469 159-494 (559)
37 PRK10747 putative protoheme IX 99.5 7.3E-11 1.6E-15 120.1 33.3 247 182-436 129-390 (398)
38 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 3.1E-15 118.7 33.6 253 179-435 126-398 (409)
39 KOG2003 TPR repeat-containing 99.5 1.4E-10 3.1E-15 110.5 29.9 418 43-470 206-689 (840)
40 PRK10747 putative protoheme IX 99.5 5.1E-11 1.1E-15 121.3 29.3 274 184-468 97-388 (398)
41 KOG1915 Cell cycle control pro 99.5 2.7E-09 5.8E-14 102.7 38.3 440 15-468 85-583 (677)
42 KOG1155 Anaphase-promoting com 99.5 5.5E-10 1.2E-14 107.2 33.1 322 35-367 161-494 (559)
43 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.5E-16 124.0 21.7 190 275-469 423-619 (638)
44 KOG1126 DNA-binding cell divis 99.4 1.6E-11 3.5E-16 123.0 22.4 243 217-469 334-585 (638)
45 PF13429 TPR_15: Tetratricopep 99.4 9.3E-13 2E-17 128.0 13.6 162 202-365 110-274 (280)
46 KOG1173 Anaphase-promoting com 99.4 4.5E-10 9.8E-15 110.5 31.0 444 2-468 15-516 (611)
47 KOG0495 HAT repeat protein [RN 99.4 1.3E-08 2.8E-13 101.8 41.0 419 35-470 377-846 (913)
48 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.5E-15 116.8 29.7 278 117-401 96-396 (409)
49 KOG1915 Cell cycle control pro 99.4 1.5E-08 3.2E-13 97.7 36.3 388 82-476 86-506 (677)
50 KOG4318 Bicoid mRNA stability 99.4 3.5E-09 7.6E-14 109.3 33.1 127 344-474 464-598 (1088)
51 TIGR02521 type_IV_pilW type IV 99.3 2.3E-10 5.1E-15 107.9 22.8 197 272-469 30-231 (234)
52 COG2956 Predicted N-acetylgluc 99.3 4.4E-09 9.5E-14 96.7 29.2 264 82-416 48-324 (389)
53 COG3071 HemY Uncharacterized e 99.3 6E-09 1.3E-13 98.8 31.0 274 153-434 97-388 (400)
54 PF13041 PPR_2: PPR repeat fam 99.3 5.9E-12 1.3E-16 86.0 6.9 50 302-351 1-50 (50)
55 KOG4318 Bicoid mRNA stability 99.3 1.7E-09 3.7E-14 111.5 24.5 342 90-455 11-393 (1088)
56 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.4E-16 84.6 5.8 50 67-117 1-50 (50)
57 PRK12370 invasion protein regu 99.2 3.3E-09 7.1E-14 112.9 27.0 261 201-470 255-535 (553)
58 KOG0547 Translocase of outer m 99.2 5.1E-08 1.1E-12 94.6 30.9 219 211-437 335-567 (606)
59 KOG1840 Kinesin light chain [C 99.2 9.5E-09 2.1E-13 104.4 27.2 231 238-468 199-477 (508)
60 COG3071 HemY Uncharacterized e 99.2 2.8E-08 6.2E-13 94.3 28.2 273 51-331 97-388 (400)
61 KOG2376 Signal recognition par 99.2 5.6E-07 1.2E-11 89.6 37.9 439 5-465 14-515 (652)
62 KOG2047 mRNA splicing factor [ 99.2 6.6E-07 1.4E-11 89.8 38.0 450 15-469 114-686 (835)
63 COG2956 Predicted N-acetylgluc 99.2 2.9E-08 6.2E-13 91.4 25.8 246 213-463 46-304 (389)
64 TIGR02521 type_IV_pilW type IV 99.2 1.6E-08 3.4E-13 95.3 24.4 198 202-435 31-231 (234)
65 KOG1173 Anaphase-promoting com 99.1 1.1E-07 2.5E-12 94.0 29.4 271 137-415 241-530 (611)
66 KOG1156 N-terminal acetyltrans 99.1 2.9E-06 6.3E-11 85.6 39.6 440 12-467 16-508 (700)
67 KOG1840 Kinesin light chain [C 99.1 2.6E-08 5.7E-13 101.2 25.3 231 204-434 201-477 (508)
68 KOG1174 Anaphase-promoting com 99.1 4.9E-07 1.1E-11 86.1 31.1 387 42-442 101-506 (564)
69 PRK12370 invasion protein regu 99.1 1.8E-08 3.8E-13 107.3 23.8 257 170-437 255-536 (553)
70 KOG4162 Predicted calmodulin-b 99.1 3.9E-07 8.5E-12 93.5 31.2 439 15-470 296-783 (799)
71 KOG1129 TPR repeat-containing 99.1 5.9E-09 1.3E-13 95.8 16.0 229 206-470 227-458 (478)
72 PRK11189 lipoprotein NlpI; Pro 99.1 3.7E-08 8.1E-13 96.0 22.0 211 252-471 40-266 (296)
73 KOG3785 Uncharacterized conser 99.0 2.4E-06 5.3E-11 79.8 29.8 408 47-472 31-492 (557)
74 PRK11189 lipoprotein NlpI; Pro 99.0 3.5E-07 7.5E-12 89.2 25.7 217 216-440 40-269 (296)
75 KOG2047 mRNA splicing factor [ 99.0 2.6E-05 5.5E-10 78.8 37.2 398 55-469 92-578 (835)
76 PF12569 NARP1: NMDA receptor- 98.9 4E-06 8.7E-11 86.6 32.7 254 205-465 197-515 (517)
77 KOG1129 TPR repeat-containing 98.9 4.5E-08 9.8E-13 90.1 16.0 192 276-472 226-426 (478)
78 KOG0985 Vesicle coat protein c 98.9 1.4E-05 3.1E-10 84.3 35.6 427 10-469 845-1369(1666)
79 KOG1174 Anaphase-promoting com 98.9 2.7E-05 5.8E-10 74.6 33.8 286 175-468 198-498 (564)
80 COG3063 PilF Tfp pilus assembl 98.9 1.4E-07 3.1E-12 83.1 17.4 164 306-472 37-204 (250)
81 KOG3616 Selective LIM binding 98.9 8.5E-07 1.8E-11 90.0 23.9 191 248-465 742-932 (1636)
82 KOG4340 Uncharacterized conser 98.9 5.8E-06 1.3E-10 75.6 26.4 305 41-365 13-336 (459)
83 KOG2376 Signal recognition par 98.8 1.5E-05 3.2E-10 79.8 31.2 408 44-469 18-486 (652)
84 KOG1125 TPR repeat-containing 98.8 3.5E-07 7.6E-12 91.0 19.5 218 249-469 296-526 (579)
85 KOG4162 Predicted calmodulin-b 98.8 4.4E-05 9.6E-10 78.9 34.4 331 135-468 318-747 (799)
86 PF04733 Coatomer_E: Coatomer 98.8 4.8E-07 1E-11 87.0 19.6 160 275-441 104-270 (290)
87 KOG0548 Molecular co-chaperone 98.8 3.7E-06 8.1E-11 83.1 25.5 214 241-469 227-454 (539)
88 PF12569 NARP1: NMDA receptor- 98.8 7.7E-06 1.7E-10 84.6 29.2 125 341-468 196-332 (517)
89 KOG1127 TPR repeat-containing 98.8 1.2E-05 2.7E-10 84.9 30.1 439 21-467 474-993 (1238)
90 KOG1156 N-terminal acetyltrans 98.8 2.7E-05 6E-10 78.8 31.1 380 82-472 20-470 (700)
91 PF04733 Coatomer_E: Coatomer 98.8 1.2E-07 2.7E-12 91.0 14.4 244 211-469 10-264 (290)
92 KOG3785 Uncharacterized conser 98.8 1.3E-05 2.8E-10 75.1 26.7 380 76-467 29-454 (557)
93 COG3063 PilF Tfp pilus assembl 98.8 3.9E-06 8.4E-11 74.2 21.7 185 205-395 38-227 (250)
94 KOG3616 Selective LIM binding 98.7 9.5E-06 2.1E-10 82.7 26.5 215 180-430 715-931 (1636)
95 KOG0985 Vesicle coat protein c 98.7 0.00016 3.5E-09 76.7 36.1 211 154-388 1089-1326(1666)
96 KOG0624 dsRNA-activated protei 98.7 2E-05 4.3E-10 73.6 25.9 289 146-440 44-374 (504)
97 cd05804 StaR_like StaR_like; a 98.7 2.1E-05 4.5E-10 79.5 28.8 256 211-470 52-336 (355)
98 cd05804 StaR_like StaR_like; a 98.7 0.0001 2.2E-09 74.5 32.2 199 71-300 8-213 (355)
99 PRK04841 transcriptional regul 98.6 5.3E-05 1.1E-09 86.9 33.1 321 149-470 383-760 (903)
100 PF12854 PPR_1: PPR repeat 98.6 7.3E-08 1.6E-12 59.0 4.3 33 135-167 2-34 (34)
101 TIGR03302 OM_YfiO outer membra 98.6 4.3E-06 9.2E-11 79.0 18.5 181 272-470 32-232 (235)
102 PRK04841 transcriptional regul 98.5 0.00033 7.1E-09 80.4 35.7 323 116-439 385-763 (903)
103 KOG0548 Molecular co-chaperone 98.5 0.00032 6.9E-09 69.9 29.6 234 205-452 227-471 (539)
104 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.9E-12 57.2 4.4 32 370-401 2-33 (34)
105 KOG3617 WD40 and TPR repeat-co 98.5 0.00037 8.1E-09 72.5 30.2 259 37-331 725-994 (1416)
106 KOG0624 dsRNA-activated protei 98.5 0.00025 5.4E-09 66.5 26.2 306 75-406 44-373 (504)
107 PLN02789 farnesyltranstransfer 98.5 5.2E-05 1.1E-09 73.9 23.1 163 289-454 88-268 (320)
108 PRK10370 formate-dependent nit 98.5 1.4E-05 3E-10 72.6 17.4 117 352-470 52-173 (198)
109 KOG4340 Uncharacterized conser 98.5 9.4E-05 2E-09 67.9 22.0 301 142-466 12-335 (459)
110 PRK15359 type III secretion sy 98.4 8.2E-06 1.8E-10 70.0 14.6 122 325-452 14-137 (144)
111 KOG1070 rRNA processing protei 98.4 2.6E-05 5.5E-10 85.3 20.9 200 270-473 1455-1666(1710)
112 KOG1127 TPR repeat-containing 98.4 0.0001 2.2E-09 78.3 24.4 372 84-466 473-909 (1238)
113 KOG1070 rRNA processing protei 98.4 9.2E-05 2E-09 81.2 23.7 226 128-356 1447-1688(1710)
114 KOG2053 Mitochondrial inherita 98.4 0.0053 1.1E-07 65.1 35.4 409 50-476 21-508 (932)
115 KOG3617 WD40 and TPR repeat-co 98.4 0.0012 2.6E-08 68.9 29.8 166 13-197 738-938 (1416)
116 TIGR03302 OM_YfiO outer membra 98.4 4.1E-05 9E-10 72.2 18.6 182 236-438 31-234 (235)
117 PLN02789 farnesyltranstransfer 98.3 0.00041 9E-09 67.7 25.1 206 208-419 43-267 (320)
118 PRK10370 formate-dependent nit 98.3 7E-05 1.5E-09 68.0 18.4 154 280-444 23-181 (198)
119 KOG1914 mRNA cleavage and poly 98.3 0.0026 5.7E-08 63.5 30.1 202 218-424 309-527 (656)
120 COG4783 Putative Zn-dependent 98.3 0.00032 6.9E-09 69.3 23.4 176 288-468 252-435 (484)
121 PRK15363 pathogenicity island 98.3 1.2E-05 2.5E-10 67.9 11.9 118 375-515 35-154 (157)
122 PRK15359 type III secretion sy 98.3 1.5E-05 3.3E-10 68.3 12.9 107 360-471 14-122 (144)
123 KOG1914 mRNA cleavage and poly 98.3 0.0061 1.3E-07 61.0 36.8 424 35-466 17-535 (656)
124 KOG1128 Uncharacterized conser 98.3 4.5E-05 9.8E-10 78.4 17.4 215 241-473 401-619 (777)
125 KOG1128 Uncharacterized conser 98.3 5.8E-05 1.2E-09 77.6 18.0 190 268-472 393-584 (777)
126 PRK15179 Vi polysaccharide bio 98.2 9.3E-05 2E-09 79.6 19.7 133 303-439 85-220 (694)
127 PRK14720 transcript cleavage f 98.2 0.00018 3.9E-09 78.3 21.8 219 201-459 30-273 (906)
128 COG5010 TadD Flp pilus assembl 98.2 4.3E-05 9.3E-10 69.2 14.1 126 343-470 70-197 (257)
129 COG5010 TadD Flp pilus assembl 98.2 0.00012 2.6E-09 66.4 16.9 149 312-463 74-224 (257)
130 TIGR00756 PPR pentatricopeptid 98.2 3E-06 6.5E-11 52.6 4.4 34 305-338 1-34 (35)
131 KOG1125 TPR repeat-containing 98.2 0.00011 2.3E-09 73.7 17.3 223 211-439 294-530 (579)
132 KOG3081 Vesicle coat complex C 98.2 0.0028 6.1E-08 57.8 24.3 175 260-441 95-276 (299)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 72.9 16.5 130 274-406 170-299 (395)
134 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 51.8 4.0 35 70-105 1-35 (35)
135 TIGR02552 LcrH_SycD type III s 98.1 4.6E-05 1E-09 64.8 11.2 94 376-469 18-113 (135)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 73.2 14.7 117 76-198 176-295 (395)
137 PRK14720 transcript cleavage f 98.0 0.0048 1E-07 67.5 28.0 60 204-266 118-177 (906)
138 COG4783 Putative Zn-dependent 98.0 0.0023 4.9E-08 63.4 22.7 147 304-472 306-456 (484)
139 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 49.8 4.4 33 305-337 2-34 (34)
140 PRK15179 Vi polysaccharide bio 98.0 0.0012 2.6E-08 71.3 22.8 144 268-415 81-230 (694)
141 TIGR02552 LcrH_SycD type III s 98.0 0.00019 4.1E-09 61.0 13.5 113 326-442 5-120 (135)
142 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 49.8 4.0 34 69-103 1-34 (34)
143 KOG3081 Vesicle coat complex C 97.9 0.0082 1.8E-07 54.8 21.6 69 286-355 186-257 (299)
144 KOG3060 Uncharacterized conser 97.8 0.005 1.1E-07 55.7 19.6 170 276-453 55-234 (289)
145 PF04840 Vps16_C: Vps16, C-ter 97.8 0.036 7.8E-07 54.1 31.8 122 276-417 180-301 (319)
146 PF09976 TPR_21: Tetratricopep 97.8 0.00063 1.4E-08 58.5 13.8 51 414-465 92-142 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00034 7.4E-09 57.8 11.6 101 342-442 5-111 (119)
148 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 7E-10 46.3 3.4 31 305-335 1-31 (31)
149 cd00189 TPR Tetratricopeptide 97.8 0.0003 6.5E-09 54.9 10.1 92 378-469 3-96 (100)
150 PF09976 TPR_21: Tetratricopep 97.7 0.002 4.4E-08 55.4 15.7 125 307-433 15-144 (145)
151 KOG3060 Uncharacterized conser 97.7 0.0021 4.6E-08 58.1 15.8 181 286-470 25-220 (289)
152 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.8E-10 45.7 3.6 31 203-233 1-31 (31)
153 PF04840 Vps16_C: Vps16, C-ter 97.7 0.025 5.4E-07 55.2 24.0 108 173-297 179-286 (319)
154 PF12895 Apc3: Anaphase-promot 97.7 4.2E-05 9.2E-10 58.7 3.6 56 409-465 27-82 (84)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00052 1.1E-08 56.6 10.2 96 376-471 3-106 (119)
156 KOG2053 Mitochondrial inherita 97.6 0.16 3.5E-06 54.4 41.0 211 15-232 21-256 (932)
157 PRK10153 DNA-binding transcrip 97.6 0.0036 7.8E-08 65.5 17.2 139 301-441 334-487 (517)
158 PF13414 TPR_11: TPR repeat; P 97.6 0.00017 3.6E-09 53.0 5.4 64 406-469 2-66 (69)
159 cd00189 TPR Tetratricopeptide 97.5 0.0012 2.6E-08 51.3 10.6 90 347-438 8-99 (100)
160 PF05843 Suf: Suppressor of fo 97.5 0.0033 7.1E-08 60.6 14.2 133 305-440 2-140 (280)
161 KOG0553 TPR repeat-containing 97.4 0.001 2.2E-08 61.7 9.9 92 349-442 91-184 (304)
162 PLN03088 SGT1, suppressor of 97.4 0.0022 4.7E-08 64.2 13.2 101 348-450 11-113 (356)
163 PRK02603 photosystem I assembl 97.4 0.0039 8.5E-08 55.4 13.4 131 303-456 34-166 (172)
164 PF13432 TPR_16: Tetratricopep 97.4 0.00036 7.8E-09 50.4 5.5 57 413-469 3-59 (65)
165 PRK02603 photosystem I assembl 97.4 0.0014 3E-08 58.3 10.3 81 376-456 36-121 (172)
166 KOG0550 Molecular chaperone (D 97.4 0.0066 1.4E-07 58.8 15.1 153 312-470 177-350 (486)
167 KOG2041 WD40 repeat protein [G 97.4 0.21 4.5E-06 52.0 26.2 246 54-332 679-951 (1189)
168 CHL00033 ycf3 photosystem I as 97.4 0.0014 2.9E-08 58.1 10.0 93 374-466 34-138 (168)
169 PLN03088 SGT1, suppressor of 97.3 0.0011 2.4E-08 66.3 9.8 89 382-470 9-99 (356)
170 PF12895 Apc3: Anaphase-promot 97.3 0.00091 2E-08 51.3 6.9 80 317-400 2-83 (84)
171 PRK15331 chaperone protein Sic 97.3 0.0034 7.3E-08 53.5 10.1 88 382-469 44-133 (165)
172 PF13432 TPR_16: Tetratricopep 97.2 0.00096 2.1E-08 48.2 6.0 61 381-441 3-65 (65)
173 KOG0553 TPR repeat-containing 97.2 0.00082 1.8E-08 62.4 6.7 85 385-469 91-177 (304)
174 PF08579 RPM2: Mitochondrial r 97.2 0.0094 2E-07 46.9 11.3 80 307-387 28-116 (120)
175 PF14938 SNAP: Soluble NSF att 97.2 0.058 1.3E-06 52.2 19.4 166 208-401 41-222 (282)
176 KOG2796 Uncharacterized conser 97.1 0.053 1.2E-06 49.5 16.9 138 203-343 178-323 (366)
177 KOG2280 Vacuolar assembly/sort 97.1 0.47 1E-05 50.1 27.3 353 79-465 399-794 (829)
178 PF13371 TPR_9: Tetratricopept 97.1 0.0011 2.4E-08 49.1 5.6 56 415-470 3-58 (73)
179 KOG2280 Vacuolar assembly/sort 97.1 0.37 8.1E-06 50.8 25.0 109 276-400 687-795 (829)
180 COG4235 Cytochrome c biogenesi 97.1 0.0042 9.1E-08 58.1 10.4 106 371-476 152-262 (287)
181 PF14559 TPR_19: Tetratricopep 97.1 0.00048 1.1E-08 50.3 3.5 52 418-469 2-53 (68)
182 PF13281 DUF4071: Domain of un 97.1 0.071 1.5E-06 52.6 19.2 161 278-441 146-339 (374)
183 PRK15363 pathogenicity island 97.1 0.012 2.6E-07 50.0 12.1 95 202-299 35-129 (157)
184 PF06239 ECSIT: Evolutionarily 97.1 0.0069 1.5E-07 53.9 10.9 97 293-390 34-153 (228)
185 PF05843 Suf: Suppressor of fo 97.1 0.0081 1.8E-07 57.9 12.5 124 107-231 3-136 (280)
186 PF14938 SNAP: Soluble NSF att 97.1 0.043 9.3E-07 53.1 17.6 98 342-439 117-228 (282)
187 PF07079 DUF1347: Protein of u 97.1 0.39 8.4E-06 47.7 35.8 440 15-468 18-522 (549)
188 PF08579 RPM2: Mitochondrial r 97.0 0.0071 1.5E-07 47.6 9.2 80 72-152 28-116 (120)
189 CHL00033 ycf3 photosystem I as 97.0 0.014 3.1E-07 51.5 12.8 81 304-386 35-117 (168)
190 COG4700 Uncharacterized protei 97.0 0.051 1.1E-06 46.9 15.0 132 335-468 85-220 (251)
191 COG4700 Uncharacterized protei 97.0 0.02 4.3E-07 49.4 12.2 106 364-469 78-188 (251)
192 PF10037 MRP-S27: Mitochondria 97.0 0.0097 2.1E-07 59.8 12.2 117 236-352 64-186 (429)
193 PF13414 TPR_11: TPR repeat; P 97.0 0.0019 4.2E-08 47.2 5.5 65 374-438 2-69 (69)
194 PF10037 MRP-S27: Mitochondria 97.0 0.011 2.4E-07 59.5 12.4 120 268-388 61-186 (429)
195 KOG1130 Predicted G-alpha GTPa 97.0 0.0061 1.3E-07 58.9 10.0 256 211-468 26-342 (639)
196 PRK10866 outer membrane biogen 97.0 0.31 6.8E-06 45.8 21.5 53 346-398 182-235 (243)
197 PF14559 TPR_19: Tetratricopep 96.9 0.0043 9.4E-08 45.1 6.9 61 351-413 3-64 (68)
198 PRK10153 DNA-binding transcrip 96.9 0.031 6.7E-07 58.6 15.6 135 333-471 331-483 (517)
199 PF13431 TPR_17: Tetratricopep 96.9 0.00043 9.4E-09 42.2 1.2 32 430-461 2-33 (34)
200 PF06239 ECSIT: Evolutionarily 96.9 0.0063 1.4E-07 54.2 8.7 100 56-156 32-154 (228)
201 COG3898 Uncharacterized membra 96.9 0.51 1.1E-05 45.9 25.2 247 214-479 132-399 (531)
202 PRK10866 outer membrane biogen 96.8 0.24 5.2E-06 46.6 19.5 172 179-366 40-239 (243)
203 PF12688 TPR_5: Tetratrico pep 96.8 0.037 7.9E-07 45.3 12.2 91 310-400 7-100 (120)
204 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.64 1.4E-05 46.1 28.4 389 35-440 39-535 (660)
205 PF12688 TPR_5: Tetratrico pep 96.7 0.056 1.2E-06 44.2 12.4 107 208-314 7-116 (120)
206 KOG0550 Molecular chaperone (D 96.6 0.64 1.4E-05 45.6 20.8 87 312-401 257-347 (486)
207 PF12921 ATP13: Mitochondrial 96.6 0.032 6.8E-07 46.1 10.3 52 334-385 47-98 (126)
208 PRK10803 tol-pal system protei 96.6 0.012 2.7E-07 55.7 9.0 90 350-439 154-249 (263)
209 PF13428 TPR_14: Tetratricopep 96.5 0.0036 7.8E-08 40.9 3.4 42 408-449 2-43 (44)
210 PRK10803 tol-pal system protei 96.5 0.052 1.1E-06 51.5 12.5 93 307-401 146-243 (263)
211 KOG1130 Predicted G-alpha GTPa 96.4 0.02 4.3E-07 55.5 9.4 276 78-367 26-343 (639)
212 KOG2796 Uncharacterized conser 96.3 0.34 7.3E-06 44.5 15.9 133 306-439 179-318 (366)
213 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.013 2.8E-07 58.4 7.8 97 374-473 74-177 (453)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.4 3.1E-05 43.8 30.3 405 58-469 29-530 (660)
215 PF13371 TPR_9: Tetratricopept 96.2 0.013 2.9E-07 43.2 5.8 62 383-444 3-66 (73)
216 KOG1538 Uncharacterized conser 96.1 0.49 1.1E-05 49.0 17.6 206 206-434 602-844 (1081)
217 PF12921 ATP13: Mitochondrial 96.0 0.085 1.8E-06 43.6 10.1 49 370-418 47-99 (126)
218 COG4235 Cytochrome c biogenesi 96.0 0.3 6.4E-06 46.1 14.6 103 337-441 154-261 (287)
219 PF13525 YfiO: Outer membrane 96.0 0.26 5.6E-06 45.0 14.1 85 307-395 113-198 (203)
220 PF13525 YfiO: Outer membrane 95.9 1.3 2.8E-05 40.4 20.5 80 344-428 115-199 (203)
221 KOG1920 IkappaB kinase complex 95.9 1.4 3.1E-05 49.2 20.7 158 184-401 893-1052(1265)
222 KOG2041 WD40 repeat protein [G 95.9 3 6.4E-05 44.0 25.1 138 52-202 748-909 (1189)
223 PF09205 DUF1955: Domain of un 95.8 0.28 6.1E-06 39.9 11.6 139 316-473 14-152 (161)
224 PF13424 TPR_12: Tetratricopep 95.8 0.015 3.2E-07 43.7 4.3 24 410-433 49-72 (78)
225 KOG3941 Intermediate in Toll s 95.7 0.1 2.2E-06 48.2 10.0 100 291-391 52-174 (406)
226 KOG0543 FKBP-type peptidyl-pro 95.6 0.15 3.3E-06 49.9 11.4 63 407-469 257-319 (397)
227 PF13281 DUF4071: Domain of un 95.4 1.9 4.2E-05 42.8 18.4 68 47-115 150-227 (374)
228 COG3898 Uncharacterized membra 95.4 2.9 6.3E-05 41.0 29.0 277 117-401 96-389 (531)
229 PF03704 BTAD: Bacterial trans 95.3 0.048 1E-06 46.8 6.4 60 409-468 64-123 (146)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.11 2.4E-06 52.1 9.2 61 338-401 74-138 (453)
231 PF13424 TPR_12: Tetratricopep 95.2 0.023 5.1E-07 42.6 3.5 61 408-468 6-73 (78)
232 KOG1538 Uncharacterized conser 95.2 1.6 3.5E-05 45.4 17.1 185 72-301 601-801 (1081)
233 COG0457 NrfG FOG: TPR repeat [ 95.1 2.6 5.6E-05 38.6 27.2 193 274-468 60-263 (291)
234 KOG0543 FKBP-type peptidyl-pro 95.1 0.38 8.1E-06 47.3 12.0 137 311-469 215-354 (397)
235 KOG1258 mRNA processing protei 95.0 5.2 0.00011 41.6 33.8 179 272-455 296-489 (577)
236 KOG3941 Intermediate in Toll s 94.9 0.17 3.7E-06 46.8 8.6 102 54-156 50-174 (406)
237 PF03704 BTAD: Bacterial trans 94.7 0.15 3.3E-06 43.6 7.8 71 306-377 64-138 (146)
238 COG0457 NrfG FOG: TPR repeat [ 94.7 3.4 7.3E-05 37.8 26.1 200 238-439 59-268 (291)
239 smart00299 CLH Clathrin heavy 94.6 2.5 5.4E-05 35.8 15.2 83 110-196 12-94 (140)
240 COG1729 Uncharacterized protei 94.5 0.42 9.2E-06 44.5 10.5 89 351-439 153-247 (262)
241 PRK15331 chaperone protein Sic 94.2 0.67 1.5E-05 39.8 10.3 91 208-301 43-133 (165)
242 PRK09687 putative lyase; Provi 94.2 5.5 0.00012 38.3 27.5 202 200-415 66-275 (280)
243 smart00299 CLH Clathrin heavy 94.2 2.2 4.7E-05 36.1 13.8 85 7-95 11-95 (140)
244 KOG4555 TPR repeat-containing 94.2 0.38 8.3E-06 39.1 8.1 89 384-472 52-146 (175)
245 PF13512 TPR_18: Tetratricopep 93.9 1.8 3.9E-05 36.3 12.0 62 312-373 18-81 (142)
246 PF13512 TPR_18: Tetratricopep 93.9 1.4 3.1E-05 36.9 11.3 57 386-442 21-82 (142)
247 PF00515 TPR_1: Tetratricopept 93.7 0.094 2E-06 31.7 3.3 32 408-439 2-33 (34)
248 KOG1941 Acetylcholine receptor 93.6 0.67 1.4E-05 44.7 10.0 47 212-259 16-64 (518)
249 KOG1585 Protein required for f 93.5 5.9 0.00013 36.3 17.2 25 205-229 34-58 (308)
250 KOG2114 Vacuolar assembly/sort 93.5 13 0.00029 40.3 25.3 174 41-228 337-516 (933)
251 PF10300 DUF3808: Protein of u 93.5 3.1 6.8E-05 43.4 15.9 115 352-469 246-375 (468)
252 KOG2066 Vacuolar assembly/sort 93.4 13 0.00029 40.0 27.0 165 45-229 363-532 (846)
253 PF07719 TPR_2: Tetratricopept 93.4 0.16 3.5E-06 30.5 3.9 33 408-440 2-34 (34)
254 KOG2610 Uncharacterized conser 93.3 1.7 3.6E-05 41.6 12.0 154 285-441 115-283 (491)
255 PF10300 DUF3808: Protein of u 93.3 12 0.00026 39.1 22.8 157 108-266 191-375 (468)
256 COG3118 Thioredoxin domain-con 93.1 4.3 9.4E-05 38.4 14.3 120 348-470 143-265 (304)
257 COG3118 Thioredoxin domain-con 93.1 6.8 0.00015 37.1 15.5 136 114-252 143-286 (304)
258 PRK11906 transcriptional regul 93.0 4.9 0.00011 40.8 15.5 157 305-464 252-430 (458)
259 PF04053 Coatomer_WDAD: Coatom 93.0 3 6.4E-05 43.0 14.5 135 239-403 296-430 (443)
260 PF04053 Coatomer_WDAD: Coatom 92.9 6.5 0.00014 40.5 16.9 46 149-196 327-372 (443)
261 KOG2610 Uncharacterized conser 92.9 1.1 2.3E-05 42.8 10.0 159 316-477 115-283 (491)
262 PF04184 ST7: ST7 protein; In 92.7 13 0.00028 38.0 18.0 56 310-365 265-321 (539)
263 PF09205 DUF1955: Domain of un 92.6 5.1 0.00011 32.9 12.5 65 305-371 87-151 (161)
264 COG1729 Uncharacterized protei 92.4 2.1 4.4E-05 40.1 11.2 95 306-401 144-241 (262)
265 PF02259 FAT: FAT domain; Int 92.1 14 0.00031 36.9 20.1 148 302-452 144-303 (352)
266 KOG0890 Protein kinase of the 92.0 38 0.00083 41.7 23.6 309 145-472 1388-1733(2382)
267 COG4105 ComL DNA uptake lipopr 91.9 11 0.00023 35.1 20.9 158 311-469 41-232 (254)
268 PRK11906 transcriptional regul 91.8 2.5 5.4E-05 42.8 11.8 125 343-467 257-398 (458)
269 PF04184 ST7: ST7 protein; In 91.7 4 8.6E-05 41.6 13.0 150 315-476 179-330 (539)
270 KOG4555 TPR repeat-containing 91.7 4.6 0.0001 33.1 10.8 87 314-401 53-141 (175)
271 COG4105 ComL DNA uptake lipopr 91.6 11 0.00025 35.0 17.8 157 284-440 45-237 (254)
272 PF13170 DUF4003: Protein of u 91.6 14 0.0003 35.9 16.6 127 255-384 79-226 (297)
273 PRK11619 lytic murein transgly 91.2 26 0.00056 38.3 31.9 116 317-435 254-374 (644)
274 PF07035 Mic1: Colon cancer-as 91.2 9.4 0.0002 33.2 14.2 31 91-122 16-46 (167)
275 KOG1464 COP9 signalosome, subu 91.0 13 0.00029 34.5 14.6 211 204-420 67-317 (440)
276 COG4785 NlpI Lipoprotein NlpI, 90.8 12 0.00026 33.8 13.8 162 304-472 99-268 (297)
277 COG3947 Response regulator con 90.7 15 0.00033 34.7 15.4 59 410-468 282-340 (361)
278 KOG4234 TPR repeat-containing 90.7 1.1 2.4E-05 39.5 7.0 87 385-471 105-198 (271)
279 KOG2114 Vacuolar assembly/sort 90.6 11 0.00024 40.9 15.5 139 280-431 375-514 (933)
280 PF07035 Mic1: Colon cancer-as 90.6 11 0.00024 32.8 13.1 132 126-266 15-148 (167)
281 COG3629 DnrI DNA-binding trans 90.5 2.1 4.6E-05 40.6 9.5 76 273-348 153-236 (280)
282 PF08631 SPO22: Meiosis protei 89.7 20 0.00043 34.5 25.2 62 204-267 86-150 (278)
283 PF00637 Clathrin: Region in C 89.7 0.67 1.5E-05 39.5 5.2 84 111-197 13-96 (143)
284 PF04097 Nic96: Nup93/Nic96; 89.4 36 0.00078 37.1 20.1 211 68-301 111-355 (613)
285 COG4649 Uncharacterized protei 89.1 5.6 0.00012 34.4 9.8 49 183-231 70-123 (221)
286 PF10602 RPN7: 26S proteasome 88.9 12 0.00026 33.1 12.6 56 275-330 38-99 (177)
287 PF13428 TPR_14: Tetratricopep 88.9 1.4 3.1E-05 28.4 5.1 29 204-232 3-31 (44)
288 PF13181 TPR_8: Tetratricopept 88.9 0.55 1.2E-05 28.2 3.0 31 409-439 3-33 (34)
289 PF07079 DUF1347: Protein of u 88.5 30 0.00066 35.0 28.9 395 17-433 59-521 (549)
290 PF13176 TPR_7: Tetratricopept 88.3 1.1 2.4E-05 27.4 4.1 26 204-229 1-26 (36)
291 PRK09687 putative lyase; Provi 88.2 25 0.00055 33.8 26.2 83 220-313 192-276 (280)
292 PF10602 RPN7: 26S proteasome 88.1 6.8 0.00015 34.7 10.5 95 305-401 37-139 (177)
293 PF13176 TPR_7: Tetratricopept 88.1 0.64 1.4E-05 28.5 2.9 25 410-434 2-26 (36)
294 KOG1585 Protein required for f 87.9 22 0.00048 32.8 19.4 52 378-430 193-250 (308)
295 KOG1920 IkappaB kinase complex 87.8 57 0.0012 37.3 21.6 25 41-65 793-819 (1265)
296 KOG4570 Uncharacterized conser 87.6 3.7 8.1E-05 39.0 8.6 49 84-133 115-163 (418)
297 PF02259 FAT: FAT domain; Int 87.5 32 0.0007 34.2 17.2 65 405-469 144-212 (352)
298 PF13170 DUF4003: Protein of u 87.3 15 0.00033 35.6 13.2 126 218-346 78-224 (297)
299 KOG1586 Protein required for f 86.8 25 0.00054 32.2 14.0 24 417-440 164-187 (288)
300 PF10345 Cohesin_load: Cohesin 86.6 53 0.0012 35.8 29.1 151 15-166 72-251 (608)
301 KOG1941 Acetylcholine receptor 86.6 34 0.00074 33.5 14.7 125 310-434 128-273 (518)
302 PF09613 HrpB1_HrpK: Bacterial 86.3 6.8 0.00015 33.6 8.9 89 347-438 18-108 (160)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 85.8 5.8 0.00013 30.5 7.3 63 319-383 22-84 (103)
304 KOG4570 Uncharacterized conser 85.7 8.5 0.00018 36.7 9.9 97 268-368 59-164 (418)
305 PF09613 HrpB1_HrpK: Bacterial 85.2 23 0.00051 30.4 13.2 51 315-367 21-72 (160)
306 PF02284 COX5A: Cytochrome c o 85.0 6.8 0.00015 30.5 7.4 61 322-384 28-88 (108)
307 KOG4648 Uncharacterized conser 84.7 1.5 3.3E-05 41.9 4.7 111 347-464 105-218 (536)
308 COG3629 DnrI DNA-binding trans 84.6 3.4 7.4E-05 39.2 7.0 60 410-469 156-215 (280)
309 PF13431 TPR_17: Tetratricopep 84.3 1.5 3.3E-05 26.5 3.1 31 129-160 3-33 (34)
310 TIGR02561 HrpB1_HrpK type III 84.0 6.5 0.00014 33.2 7.6 52 420-471 23-74 (153)
311 PRK15180 Vi polysaccharide bio 83.7 21 0.00045 36.3 12.0 83 386-468 334-418 (831)
312 PF00515 TPR_1: Tetratricopept 83.3 1.6 3.5E-05 26.0 3.0 28 70-97 2-29 (34)
313 PF06552 TOM20_plant: Plant sp 81.6 15 0.00034 32.1 9.2 45 423-474 96-140 (186)
314 KOG2066 Vacuolar assembly/sort 81.5 87 0.0019 34.2 24.8 167 115-304 366-536 (846)
315 PF13174 TPR_6: Tetratricopept 80.3 2.6 5.7E-05 24.7 3.1 27 413-439 6-32 (33)
316 COG4785 NlpI Lipoprotein NlpI, 80.1 46 0.001 30.2 14.8 172 52-231 79-266 (297)
317 PF10345 Cohesin_load: Cohesin 80.0 97 0.0021 33.8 28.5 182 2-195 29-249 (608)
318 PF11207 DUF2989: Protein of u 80.0 15 0.00033 32.8 8.8 74 218-293 122-198 (203)
319 TIGR02561 HrpB1_HrpK type III 79.5 13 0.00028 31.4 7.8 48 351-401 22-70 (153)
320 KOG0276 Vesicle coat complex C 79.2 33 0.00071 36.0 11.9 150 285-467 598-747 (794)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 79.1 11 0.00025 29.0 6.7 59 86-147 24-83 (103)
322 TIGR02508 type_III_yscG type I 79.1 28 0.00061 27.2 8.7 50 181-232 49-98 (115)
323 PF13762 MNE1: Mitochondrial s 78.2 18 0.0004 30.5 8.4 78 40-118 41-128 (145)
324 KOG1464 COP9 signalosome, subu 78.2 51 0.0011 30.9 11.8 183 286-468 40-259 (440)
325 PF00637 Clathrin: Region in C 77.8 0.91 2E-05 38.6 0.7 87 7-96 11-97 (143)
326 PF13374 TPR_10: Tetratricopep 77.5 6 0.00013 24.7 4.4 26 306-331 4-29 (42)
327 smart00028 TPR Tetratricopepti 77.2 5.2 0.00011 22.5 3.9 30 410-439 4-33 (34)
328 TIGR02508 type_III_yscG type I 77.0 22 0.00048 27.7 7.6 86 19-109 21-106 (115)
329 PF07719 TPR_2: Tetratricopept 76.8 4 8.6E-05 24.2 3.2 27 71-97 3-29 (34)
330 PF13374 TPR_10: Tetratricopep 76.6 5.5 0.00012 24.8 4.1 28 203-230 3-30 (42)
331 PF04097 Nic96: Nup93/Nic96; 76.5 1.2E+02 0.0027 33.0 22.1 56 43-98 116-181 (613)
332 PF04910 Tcf25: Transcriptiona 76.2 71 0.0015 32.1 13.5 64 406-469 99-167 (360)
333 PF02284 COX5A: Cytochrome c o 75.9 13 0.00029 29.0 6.3 46 87-133 28-73 (108)
334 PF11207 DUF2989: Protein of u 75.8 27 0.00058 31.3 9.1 67 123-190 124-197 (203)
335 PF14853 Fis1_TPR_C: Fis1 C-te 75.5 17 0.00036 24.7 6.1 50 444-519 4-53 (53)
336 PF07721 TPR_4: Tetratricopept 75.3 3.8 8.2E-05 22.9 2.6 24 442-465 2-25 (26)
337 KOG3364 Membrane protein invol 75.1 41 0.00088 28.0 9.2 47 422-468 50-98 (149)
338 PRK10941 hypothetical protein; 74.7 11 0.00023 36.0 6.9 61 410-470 184-244 (269)
339 COG4455 ImpE Protein of avirul 74.6 11 0.00024 34.0 6.4 61 380-440 6-68 (273)
340 PF14853 Fis1_TPR_C: Fis1 C-te 73.8 4.9 0.00011 27.3 3.2 31 412-442 6-36 (53)
341 PF07163 Pex26: Pex26 protein; 73.7 37 0.00079 32.1 9.7 88 311-401 90-184 (309)
342 KOG1258 mRNA processing protei 73.2 1.3E+02 0.0028 31.8 29.3 368 15-392 57-492 (577)
343 KOG0276 Vesicle coat complex C 73.1 27 0.00058 36.6 9.5 44 183-228 649-692 (794)
344 PF09477 Type_III_YscG: Bacter 72.4 46 0.001 26.3 10.1 76 120-198 21-96 (116)
345 KOG0890 Protein kinase of the 72.0 2.7E+02 0.0059 35.0 29.7 154 44-208 1389-1552(2382)
346 PRK15180 Vi polysaccharide bio 71.7 32 0.0007 35.0 9.4 120 316-439 301-423 (831)
347 COG1747 Uncharacterized N-term 70.2 1.4E+02 0.0031 31.0 21.1 91 203-299 67-157 (711)
348 PF13174 TPR_6: Tetratricopept 69.4 6.3 0.00014 23.0 2.8 27 443-469 2-28 (33)
349 PF08631 SPO22: Meiosis protei 69.0 1.1E+02 0.0024 29.4 25.5 16 451-466 256-271 (278)
350 KOG4648 Uncharacterized conser 68.3 22 0.00048 34.4 7.3 86 311-407 104-198 (536)
351 KOG4234 TPR repeat-containing 68.2 68 0.0015 28.8 9.7 91 349-441 105-202 (271)
352 PF10579 Rapsyn_N: Rapsyn N-te 68.0 18 0.00038 26.8 5.2 47 351-397 18-65 (80)
353 COG1747 Uncharacterized N-term 67.0 1.6E+02 0.0036 30.6 22.5 49 236-286 64-112 (711)
354 KOG1308 Hsp70-interacting prot 66.8 4.9 0.00011 38.8 2.7 89 387-475 126-216 (377)
355 COG4455 ImpE Protein of avirul 66.6 31 0.00067 31.3 7.4 76 306-383 3-80 (273)
356 PF06552 TOM20_plant: Plant sp 66.4 22 0.00047 31.3 6.3 34 423-456 51-84 (186)
357 PRK13800 putative oxidoreducta 65.8 2.6E+02 0.0056 32.3 29.3 125 236-367 754-880 (897)
358 PRK13342 recombination factor 65.7 1.7E+02 0.0036 30.1 14.4 113 122-250 154-277 (413)
359 cd08819 CARD_MDA5_2 Caspase ac 64.8 32 0.00069 26.1 6.1 66 22-89 21-86 (88)
360 PF13181 TPR_8: Tetratricopept 64.6 18 0.0004 21.2 4.2 27 306-332 3-29 (34)
361 KOG3807 Predicted membrane pro 64.5 1E+02 0.0022 29.9 10.7 48 315-364 286-336 (556)
362 PF13929 mRNA_stabil: mRNA sta 63.1 1.4E+02 0.0031 28.5 14.9 160 3-165 96-263 (292)
363 COG4649 Uncharacterized protei 61.9 1.1E+02 0.0024 26.8 15.7 122 212-368 68-196 (221)
364 KOG4077 Cytochrome c oxidase, 61.5 56 0.0012 26.8 7.2 71 322-403 67-137 (149)
365 KOG2396 HAT (Half-A-TPR) repea 61.5 2.1E+02 0.0045 29.8 28.6 96 336-434 456-557 (568)
366 PF09670 Cas_Cas02710: CRISPR- 61.5 1.4E+02 0.003 30.3 12.2 52 315-367 142-197 (379)
367 KOG4279 Serine/threonine prote 60.1 1.4E+02 0.003 32.5 11.8 183 204-441 203-400 (1226)
368 KOG0545 Aryl-hydrocarbon recep 59.5 37 0.0008 31.4 6.7 55 415-469 238-292 (329)
369 TIGR01503 MthylAspMut_E methyl 59.4 69 0.0015 32.7 9.2 106 253-365 69-195 (480)
370 KOG2063 Vacuolar assembly/sort 59.1 2.9E+02 0.0062 31.4 14.6 216 41-285 507-744 (877)
371 PF07163 Pex26: Pex26 protein; 59.1 1.1E+02 0.0024 29.0 9.9 75 209-284 90-164 (309)
372 PF11846 DUF3366: Domain of un 58.8 42 0.0009 30.2 7.3 28 373-400 142-169 (193)
373 KOG2422 Uncharacterized conser 58.3 1.9E+02 0.0041 30.6 12.1 117 351-467 250-404 (665)
374 KOG1586 Protein required for f 58.1 1.6E+02 0.0034 27.3 16.4 57 383-439 162-227 (288)
375 KOG0376 Serine-threonine phosp 57.2 10 0.00022 38.5 3.1 95 345-442 10-107 (476)
376 PF10366 Vps39_1: Vacuolar sor 57.1 84 0.0018 25.1 7.9 27 306-332 41-67 (108)
377 cd08326 CARD_CASP9 Caspase act 56.6 31 0.00066 26.1 5.0 34 184-217 43-76 (84)
378 TIGR03504 FimV_Cterm FimV C-te 56.5 28 0.0006 22.5 4.0 22 311-332 6-27 (44)
379 cd08819 CARD_MDA5_2 Caspase ac 56.4 85 0.0019 23.9 7.1 64 125-190 22-85 (88)
380 PRK13800 putative oxidoreducta 56.3 3.7E+02 0.0081 31.1 26.9 257 159-435 623-880 (897)
381 PF04190 DUF410: Protein of un 56.1 1.9E+02 0.004 27.5 16.5 158 50-231 2-170 (260)
382 COG2976 Uncharacterized protei 55.9 1.5E+02 0.0033 26.5 14.2 85 148-232 97-189 (207)
383 KOG4507 Uncharacterized conser 55.7 26 0.00057 36.6 5.7 98 352-452 620-721 (886)
384 PF09986 DUF2225: Uncharacteri 54.7 48 0.0011 30.4 7.0 56 416-471 127-195 (214)
385 PF11768 DUF3312: Protein of u 54.4 1.5E+02 0.0033 31.1 11.0 56 277-332 412-472 (545)
386 PF04910 Tcf25: Transcriptiona 54.4 2.4E+02 0.0052 28.3 15.2 125 137-264 37-165 (360)
387 smart00386 HAT HAT (Half-A-TPR 54.4 16 0.00034 21.0 2.7 29 421-449 1-29 (33)
388 PF14561 TPR_20: Tetratricopep 54.2 20 0.00042 27.6 3.7 41 429-469 10-50 (90)
389 PF10366 Vps39_1: Vacuolar sor 53.9 98 0.0021 24.8 7.7 27 71-97 41-67 (108)
390 KOG2297 Predicted translation 53.9 2.1E+02 0.0046 27.6 10.9 216 3-230 132-399 (412)
391 COG2909 MalT ATP-dependent tra 53.8 3.7E+02 0.0079 30.2 20.8 185 285-473 427-650 (894)
392 PF14863 Alkyl_sulf_dimr: Alky 53.7 47 0.001 28.0 6.2 64 391-457 57-120 (141)
393 KOG4642 Chaperone-dependent E3 53.5 30 0.00065 31.9 5.2 82 349-433 20-104 (284)
394 PF09477 Type_III_YscG: Bacter 52.6 1.2E+02 0.0025 24.2 8.4 53 280-334 47-99 (116)
395 PF11846 DUF3366: Domain of un 52.3 50 0.0011 29.7 6.7 37 402-438 139-175 (193)
396 PF11838 ERAP1_C: ERAP1-like C 52.3 2.4E+02 0.0051 27.6 18.1 149 288-436 55-230 (324)
397 PF10579 Rapsyn_N: Rapsyn N-te 52.0 45 0.00097 24.8 4.9 46 316-361 18-65 (80)
398 COG3947 Response regulator con 52.0 43 0.00094 31.8 6.1 52 113-165 287-338 (361)
399 COG2976 Uncharacterized protei 51.7 1.8E+02 0.0039 26.1 15.2 88 247-334 98-189 (207)
400 TIGR03504 FimV_Cterm FimV C-te 51.5 31 0.00068 22.3 3.7 23 208-230 5-27 (44)
401 PF07575 Nucleopor_Nup85: Nup8 51.4 3.5E+02 0.0075 29.3 18.2 75 324-401 390-464 (566)
402 PF11663 Toxin_YhaV: Toxin wit 50.2 18 0.00038 30.0 2.9 33 315-349 106-138 (140)
403 KOG0292 Vesicle coat complex C 49.3 29 0.00064 38.1 5.1 95 317-435 606-700 (1202)
404 KOG2396 HAT (Half-A-TPR) repea 48.6 3.4E+02 0.0073 28.3 31.4 234 221-464 301-553 (568)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 46.5 1.1E+02 0.0024 25.2 7.3 42 425-466 81-124 (126)
406 KOG1550 Extracellular protein 45.6 4.2E+02 0.0091 28.5 18.1 63 85-154 228-302 (552)
407 PF14669 Asp_Glu_race_2: Putat 45.4 2.3E+02 0.0049 25.4 14.4 173 101-298 4-206 (233)
408 PF11663 Toxin_YhaV: Toxin wit 44.9 29 0.00063 28.7 3.4 32 81-115 107-138 (140)
409 PF04190 DUF410: Protein of un 44.5 2.8E+02 0.0062 26.3 20.7 83 271-368 88-170 (260)
410 PRK10941 hypothetical protein; 44.4 1.4E+02 0.0031 28.5 8.6 67 378-444 184-252 (269)
411 cd08332 CARD_CASP2 Caspase act 43.5 61 0.0013 24.9 4.9 30 185-214 48-77 (90)
412 PRK12798 chemotaxis protein; R 43.2 3.8E+02 0.0082 27.3 21.7 179 286-467 125-321 (421)
413 COG4976 Predicted methyltransf 43.2 36 0.00079 31.1 4.0 56 385-440 5-62 (287)
414 PF11848 DUF3368: Domain of un 42.8 97 0.0021 20.4 5.3 33 315-347 13-45 (48)
415 cd08326 CARD_CASP9 Caspase act 42.4 1E+02 0.0022 23.4 5.8 63 22-88 18-80 (84)
416 PHA02875 ankyrin repeat protei 42.2 3.9E+02 0.0085 27.3 18.0 201 14-234 10-227 (413)
417 KOG1498 26S proteasome regulat 42.2 3.8E+02 0.0081 27.0 14.4 197 286-487 25-258 (439)
418 PF04034 DUF367: Domain of unk 42.1 1.9E+02 0.0041 23.8 7.6 64 370-433 61-125 (127)
419 PRK10564 maltose regulon perip 41.4 53 0.0011 31.6 5.1 42 305-346 258-299 (303)
420 PF11768 DUF3312: Protein of u 40.9 1.1E+02 0.0023 32.3 7.4 25 72-96 411-435 (545)
421 KOG4077 Cytochrome c oxidase, 40.7 1.4E+02 0.003 24.6 6.5 59 87-147 67-125 (149)
422 PHA02875 ankyrin repeat protei 40.5 4.2E+02 0.009 27.1 16.0 13 51-63 12-24 (413)
423 PRK09169 hypothetical protein; 40.4 9E+02 0.019 30.9 41.5 463 5-467 124-692 (2316)
424 PF12968 DUF3856: Domain of Un 40.2 2.1E+02 0.0045 23.4 9.1 61 407-467 55-126 (144)
425 KOG0687 26S proteasome regulat 39.6 3.8E+02 0.0082 26.3 10.9 94 340-435 105-209 (393)
426 PF07720 TPR_3: Tetratricopept 39.5 74 0.0016 19.5 3.9 19 411-429 5-23 (36)
427 TIGR02270 conserved hypothetic 39.4 4.4E+02 0.0096 27.1 24.9 27 275-301 254-280 (410)
428 PF14689 SPOB_a: Sensor_kinase 39.2 83 0.0018 22.1 4.7 25 343-367 27-51 (62)
429 KOG1550 Extracellular protein 39.2 5.2E+02 0.011 27.8 23.1 171 187-366 228-424 (552)
430 PF14689 SPOB_a: Sensor_kinase 38.7 50 0.0011 23.2 3.5 26 205-230 26-51 (62)
431 KOG0403 Neoplastic transformat 38.5 4.6E+02 0.0099 27.0 19.7 59 379-437 513-573 (645)
432 KOG0551 Hsp90 co-chaperone CNS 38.5 1.6E+02 0.0036 28.8 7.7 85 382-466 88-178 (390)
433 PRK10564 maltose regulon perip 37.9 65 0.0014 31.0 5.1 31 204-234 259-289 (303)
434 smart00804 TAP_C C-terminal do 37.5 29 0.00062 24.6 2.1 25 82-106 38-62 (63)
435 PF04762 IKI3: IKI3 family; I 37.4 7.2E+02 0.016 28.9 15.0 31 274-304 813-845 (928)
436 PF06957 COPI_C: Coatomer (COP 36.5 1.4E+02 0.003 30.5 7.5 43 398-440 289-333 (422)
437 cd00280 TRFH Telomeric Repeat 36.2 2.1E+02 0.0046 25.4 7.4 33 382-414 118-150 (200)
438 PF03943 TAP_C: TAP C-terminal 36.0 21 0.00045 24.0 1.1 25 82-106 26-50 (51)
439 PF10475 DUF2450: Protein of u 35.7 3.6E+02 0.0079 26.1 10.2 27 204-230 129-155 (291)
440 COG5108 RPO41 Mitochondrial DN 35.4 1.8E+02 0.0038 31.4 8.0 72 309-384 33-112 (1117)
441 cd08323 CARD_APAF1 Caspase act 35.2 1.2E+02 0.0025 23.2 5.2 32 185-216 42-73 (86)
442 COG5108 RPO41 Mitochondrial DN 35.2 1.5E+02 0.0033 31.8 7.6 86 43-132 33-130 (1117)
443 PF12862 Apc5: Anaphase-promot 34.9 92 0.002 24.0 4.8 52 417-468 8-68 (94)
444 KOG2062 26S proteasome regulat 34.7 6.7E+02 0.014 27.7 22.0 119 313-435 510-634 (929)
445 PF13934 ELYS: Nuclear pore co 33.8 3.9E+02 0.0084 24.7 15.3 20 345-364 114-133 (226)
446 KOG0687 26S proteasome regulat 32.2 5E+02 0.011 25.5 12.4 92 274-367 105-209 (393)
447 KOG3824 Huntingtin interacting 32.1 71 0.0015 30.6 4.3 62 385-446 126-189 (472)
448 PF15161 Neuropep_like: Neurop 31.8 26 0.00057 23.5 1.1 17 566-583 12-28 (65)
449 KOG0991 Replication factor C, 31.7 4.3E+02 0.0093 24.6 11.6 56 292-349 227-282 (333)
450 KOG0686 COP9 signalosome, subu 31.2 5.8E+02 0.013 25.9 14.0 59 274-332 151-215 (466)
451 KOG0991 Replication factor C, 31.1 4.4E+02 0.0096 24.6 10.6 154 280-462 137-290 (333)
452 PRK14700 recombination factor 30.9 5.1E+02 0.011 25.2 10.5 66 203-269 124-197 (300)
453 COG2909 MalT ATP-dependent tra 30.8 8.3E+02 0.018 27.7 27.4 214 250-466 427-684 (894)
454 cd08332 CARD_CASP2 Caspase act 30.6 1.8E+02 0.0038 22.3 5.6 60 22-85 22-81 (90)
455 PF11525 CopK: Copper resistan 30.2 23 0.0005 25.1 0.6 22 586-607 8-29 (73)
456 PF13762 MNE1: Mitochondrial s 30.0 3.5E+02 0.0075 23.0 11.6 49 303-351 78-127 (145)
457 TIGR02270 conserved hypothetic 29.6 6.4E+02 0.014 25.9 25.3 121 272-403 160-280 (410)
458 PF15015 NYD-SP12_N: Spermatog 29.6 1.5E+02 0.0033 29.9 6.2 19 380-398 233-251 (569)
459 smart00777 Mad3_BUB1_I Mad3/BU 29.1 3E+02 0.0065 22.7 7.0 40 426-465 82-123 (125)
460 PF13934 ELYS: Nuclear pore co 28.8 4.7E+02 0.01 24.2 17.2 76 286-365 91-166 (226)
461 COG2912 Uncharacterized conser 28.7 1.7E+02 0.0037 27.8 6.2 58 412-469 186-243 (269)
462 KOG0292 Vesicle coat complex C 28.4 9.2E+02 0.02 27.4 12.0 130 282-435 652-781 (1202)
463 COG4976 Predicted methyltransf 28.0 1.1E+02 0.0025 28.1 4.7 56 417-472 5-60 (287)
464 PRK11639 zinc uptake transcrip 27.9 2.5E+02 0.0055 24.6 6.9 62 330-393 17-78 (169)
465 PF09670 Cas_Cas02710: CRISPR- 27.9 6.5E+02 0.014 25.5 11.2 55 114-169 140-198 (379)
466 COG0735 Fur Fe2+/Zn2+ uptake r 27.9 3.3E+02 0.0072 23.1 7.4 65 326-392 8-72 (145)
467 PF14561 TPR_20: Tetratricopep 27.6 2.8E+02 0.0061 21.2 7.8 62 406-467 21-85 (90)
468 PF11848 DUF3368: Domain of un 27.6 1.8E+02 0.004 19.1 5.1 33 212-245 12-44 (48)
469 PRK11639 zinc uptake transcrip 27.1 2.7E+02 0.0058 24.4 6.9 45 74-119 30-74 (169)
470 PF11817 Foie-gras_1: Foie gra 26.9 2.5E+02 0.0054 26.4 7.2 12 352-363 191-202 (247)
471 PF08967 DUF1884: Domain of un 26.8 78 0.0017 23.5 2.8 27 500-526 7-33 (85)
472 COG0735 Fur Fe2+/Zn2+ uptake r 26.7 3.4E+02 0.0075 23.0 7.3 47 204-251 22-68 (145)
473 KOG4279 Serine/threonine prote 26.6 3.3E+02 0.0071 30.0 8.3 27 306-332 203-229 (1226)
474 PF09454 Vps23_core: Vps23 cor 25.7 1.9E+02 0.0042 20.6 4.7 49 301-350 5-53 (65)
475 cd08329 CARD_BIRC2_BIRC3 Caspa 25.3 1.8E+02 0.0038 22.6 4.8 24 188-211 54-77 (94)
476 PRK02287 hypothetical protein; 25.1 4.5E+02 0.0097 23.1 7.6 60 375-434 107-167 (171)
477 PF10255 Paf67: RNA polymerase 24.9 4.6E+02 0.0099 26.8 8.9 55 175-229 126-191 (404)
478 KOG3824 Huntingtin interacting 24.8 1.1E+02 0.0024 29.4 4.2 54 350-406 127-182 (472)
479 PF12862 Apc5: Anaphase-promot 23.8 3.4E+02 0.0073 20.8 8.1 21 347-367 49-69 (94)
480 PF11817 Foie-gras_1: Foie gra 23.5 4.5E+02 0.0097 24.7 8.3 42 188-229 162-205 (247)
481 KOG4567 GTPase-activating prot 23.4 7E+02 0.015 24.3 10.3 72 324-401 263-344 (370)
482 smart00544 MA3 Domain in DAP-5 23.3 3.8E+02 0.0083 21.2 9.0 23 146-168 8-30 (113)
483 KOG2582 COP9 signalosome, subu 23.2 7.7E+02 0.017 24.7 9.5 56 212-268 287-346 (422)
484 cd07153 Fur_like Ferric uptake 23.2 1.9E+02 0.0042 23.1 5.1 43 312-354 8-50 (116)
485 PF08225 Antimicrobial19: Pseu 23.2 53 0.0012 17.1 1.0 12 571-582 10-21 (23)
486 cd08330 CARD_ASC_NALP1 Caspase 23.1 2.3E+02 0.0049 21.3 4.9 28 185-212 43-70 (82)
487 KOG4507 Uncharacterized conser 22.7 3.1E+02 0.0067 29.2 7.1 132 336-470 568-705 (886)
488 TIGR02328 conserved hypothetic 22.5 64 0.0014 25.7 1.9 21 506-526 53-73 (120)
489 PF10255 Paf67: RNA polymerase 22.2 5.1E+02 0.011 26.5 8.6 57 275-331 124-191 (404)
490 KOG4814 Uncharacterized conser 21.9 8.9E+02 0.019 26.3 10.2 60 410-469 397-456 (872)
491 PF09454 Vps23_core: Vps23 cor 21.8 1.3E+02 0.0027 21.5 3.1 33 67-99 6-38 (65)
492 KOG2908 26S proteasome regulat 21.7 7.9E+02 0.017 24.3 9.7 92 344-435 80-185 (380)
493 PF07575 Nucleopor_Nup85: Nup8 21.7 1E+03 0.022 25.7 13.7 35 118-157 310-344 (566)
494 KOG1114 Tripeptidyl peptidase 21.7 1.3E+03 0.027 26.7 16.1 57 338-394 1230-1286(1304)
495 KOG2471 TPR repeat-containing 21.5 9.6E+02 0.021 25.2 15.1 286 96-386 9-380 (696)
496 KOG0889 Histone acetyltransfer 21.5 2.1E+03 0.046 29.3 24.3 26 376-401 2813-2838(3550)
497 KOG1308 Hsp70-interacting prot 21.5 25 0.00054 34.2 -0.6 102 418-532 125-226 (377)
498 cd00280 TRFH Telomeric Repeat 21.4 2.4E+02 0.0053 25.0 5.3 28 413-441 117-144 (200)
499 COG5191 Uncharacterized conser 21.2 1.8E+02 0.0038 28.2 4.7 77 370-446 102-181 (435)
500 PF02607 B12-binding_2: B12 bi 20.8 1.8E+02 0.004 21.2 4.2 38 315-352 12-49 (79)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-119 Score=1006.30 Aligned_cols=601 Identities=37% Similarity=0.686 Sum_probs=580.5
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcC
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 82 (610)
..+|..+|++|+..+++..++++|..+.+.|+.||++++|+||++|+++|++++|+++|++|++||+++||+||.+|++.
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266 (857)
T ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
|++++|+++|.+|.+.| +.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++
T Consensus 267 g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 267 GECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHH-------------------------------------------------------------
Q 037713 163 FDSIKLKNSVSWTAMLSAY------------------------------------------------------------- 181 (610)
Q Consensus 163 ~~~m~~~~~~~~~~li~~~------------------------------------------------------------- 181 (610)
|++|..+|+++||++|.+|
T Consensus 346 f~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred HhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 9999988888888888877
Q ss_pred ---------HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 182 ---------ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 182 ---------~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+++|++++|.++|++|.++|+++||++|.+|+++|+.++|+++|++|.. +++ ||..||+.++.+|++.|
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~-pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK-PNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC-CCHhHHHHHHHHHhhhc
Confidence 4556666777777777778889999999999999999999999999986 577 99999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
+++.++++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 037713 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412 (610)
Q Consensus 333 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 412 (610)
.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999997789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEe
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~ 492 (610)
|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++++||+|||++++.+|.|.+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhccCCCCCcEEEEccccccCc
Q 037713 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572 (610)
Q Consensus 493 ~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~ 572 (610)
||.+||+.++|+.++++|..+|++.||.||+..++ +.++++|+..++.||||||+|||||+|++|+||||+||||+|+|
T Consensus 743 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~d 821 (857)
T PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821 (857)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCcc
Confidence 99999999999999999999999999999999888 44788999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhhcCeeEEEeCCCccccccCcccccCC
Q 037713 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608 (610)
Q Consensus 573 ~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 608 (610)
||+++|+||++.+|+|||||.+|||||++|+|||||
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-119 Score=979.35 Aligned_cols=574 Identities=34% Similarity=0.649 Sum_probs=496.7
Q ss_pred hhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCC
Q 037713 4 SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83 (610)
Q Consensus 4 ~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 83 (610)
.+|..+|.+|++.++++.+.++|..+.+.|+.||+.++|.|+++|+++|++++|+++|++|++||+++||++|.+|++.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 037713 84 LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 163 (610)
++++|+++|++|.+.| +.||..||+.++.+|++.|..+.+.++|..+.+.|+.+|..++|+|+++|+
T Consensus 204 ~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~------------ 270 (697)
T PLN03081 204 NYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS------------ 270 (697)
T ss_pred CHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH------------
Confidence 5555555555555555 555555555555555555555555555555555555555555555555555
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHH
Q 037713 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243 (610)
Q Consensus 164 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 243 (610)
++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+. ||..||++
T Consensus 271 -------------------k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~-pd~~t~~~ 330 (697)
T PLN03081 271 -------------------KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS-IDQFTFSI 330 (697)
T ss_pred -------------------HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 5555566666666777778888888888899999999999999999999999 99999999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 037713 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323 (610)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 323 (610)
++.+|++.|.++.|.++|+.+.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (610)
+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|++
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~ 490 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEE
Q 037713 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 483 (610)
.|+..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhccCCCCCcEEE
Q 037713 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563 (610)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~ 563 (610)
++.+|.|.+||..||+.+++++++.++..+|++.||.||+.++++++++++|+..++.||||||+|||||+++||.||||
T Consensus 571 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i 650 (697)
T PLN03081 571 KKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQI 650 (697)
T ss_pred CCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCcchHHHHHHhhhcCeeEEEeCCCccccccCcccccCCCC
Q 037713 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610 (610)
Q Consensus 564 ~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~~ 610 (610)
+||||+|+|||+|+|+||++++|+|||||.+|||||+||+|||||||
T Consensus 651 ~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 651 TQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-71 Score=619.42 Aligned_cols=581 Identities=24% Similarity=0.377 Sum_probs=500.3
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcC
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 82 (610)
..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|+++|+++|+++.|+++|++|++||+++||++|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
|++++|+++|++|...| +.||.+||++++++|++.+++..+.+++..+++.|+.||..++|+|+++|+++|++++|.++
T Consensus 166 g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 GYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred CCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHH-------------------------------------------------------------
Q 037713 163 FDSIKLKNSVSWTAMLSAY------------------------------------------------------------- 181 (610)
Q Consensus 163 ~~~m~~~~~~~~~~li~~~------------------------------------------------------------- 181 (610)
|++|+.+|+++||+||.+|
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 9999988877777777766
Q ss_pred ---------HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 182 ---------ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 182 ---------~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+. ||..||+.++.+|++.|
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS-PDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CCceeHHHHHHHHhccc
Confidence 45677777888888888889999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|..
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 037713 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412 (610)
Q Consensus 333 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 412 (610)
+++||..||+.++.+|++.|.++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+++ .||..+|++
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~ 559 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNI 559 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHH
Confidence 69999999999999999999999999999999985 99999999999999999999999999999999 799999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCC-CCCCcchHhHHHHhhhhcchhHHHHHHHHHh-hCCCccCCcccEEEECCEEEEE
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQHVSKVRKLMS-VMEVKKEPGYSYIEFGKGSHIF 490 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~ 490 (610)
++.+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++++.|. +.|+.|+...-.. .
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------l 631 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------V 631 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------H
Confidence 9999999999999999999998644 2356899999999999999999999999998 6788765421100 0
Q ss_pred EeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhhhhhhHHHH-HHHhhccCCCCCcEEEEccccc
Q 037713 491 YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA-VAYGLLKSVPGTVLRVVKNLRV 569 (610)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~~l~~ 569 (610)
+......+..+++. +++++| +..||...+...+..+.....+-. .|+.+ ..+.+.+..++..+.+..-+..
T Consensus 632 v~~l~r~G~~~eA~----~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 632 VDLLGRAGKLTEAY----NFINKM---PITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHhCCCHHHHH----HHHHHC---CCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 11122233444444 444445 578887654333333221111110 11111 2245555555555544455667
Q ss_pred cCcchHHHHHHhhhcCeeEEE-------eCCCccccccCcccc
Q 037713 570 CGDCHIVMKMISRITKREIVV-------RDATRYHHFKDGKCS 605 (610)
Q Consensus 570 ~~~~~~~~~~~s~~~~~~~~~-------~d~~~~h~~~~g~cs 605 (610)
.|+..++.+....|..+.+.- --.+..|-|.-|--|
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 899999999998887773221 113567788665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-64 Score=553.16 Aligned_cols=505 Identities=16% Similarity=0.167 Sum_probs=458.8
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCC-CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHc
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 81 (610)
+..|..++..|.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45788889999999999999999999999996 56777888999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
.|++++|.++|++|.+.| +.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 162 VFDSIK----LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 162 ~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
+|++|. .||..+|+++|.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999996 5799999999999999999999999999995 468999999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHH
Q 037713 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR----KDVVSW 307 (610)
Q Consensus 232 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 307 (610)
|+. |+..+|+.++.+|++.|++++|..++++|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||..+|
T Consensus 609 gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 609 NIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 998 999999999999999999999999999999999999999999999999999999999999999974 799999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 037713 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387 (610)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 387 (610)
+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+. |+.||..+|++++.+|++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999885 999999999999999999
Q ss_pred cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh-----------------------cCchhHHHHHHHHHhcCC-CCC
Q 037713 388 SGHLDEAENLIKAM---PFEPDEPTWAALLSACKH-----------------------HRNTEMGTRVANHLLSLK-PED 440 (610)
Q Consensus 388 ~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~~~~-p~~ 440 (610)
.|++++|.+++++| ++.||..+|++|+..|.+ .+..++|..+|++|.+.+ .+|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999 899999999999976542 123467999999999655 335
Q ss_pred CcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcc
Q 037713 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 520 (610)
..+|..++..+...+.++.+.++++.|...+..+........+ .|...+ ...+-.++++|.+.|+.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li--------~g~~~~------~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV--------DGFGEY------DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH--------HhhccC------hHHHHHHHHHHHHcCCC
Confidence 6889988888888899999988888886555443221111111 111111 12345788999999999
Q ss_pred cCCc
Q 037713 521 PDTS 524 (610)
Q Consensus 521 p~~~ 524 (610)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 9986
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-63 Score=544.92 Aligned_cols=464 Identities=16% Similarity=0.208 Sum_probs=431.9
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC----CCCcchHHHHHHHHH
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP----QRDHVSWASILTAYN 80 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~ 80 (610)
.+..++.+|.+.+.++.|..++..|.. ||..+||.|+.+|++.|+++.|.++|+.|. .||..+||+||.+|+
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~ 483 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 355678889999999999999988763 899999999999999999999999999997 579999999999999
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 160 (610)
+.|+.++|.++|++|.+.| +.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+||.|+.+|++.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC------CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 161 AVFDSIK------LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 161 ~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
++|++|. .||.++|+++|.+|++.|++++|.++|++|.+. +..+||++|.+|++.|++++|+++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999995 479999999999999999999999999999754 669999999999999999999999999999
Q ss_pred cCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhH
Q 037713 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR----RKDVVS 306 (610)
Q Consensus 231 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~ 306 (610)
.|+. ||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+
T Consensus 643 ~Gv~-PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 643 KGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred cCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999995 589999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|+.++.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999885 99999999999998743
Q ss_pred ----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-cCCCC
Q 037713 387 ----RSG-------------------HLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPE 439 (610)
Q Consensus 387 ----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~ 439 (610)
+++ ..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+. .-.++
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 222 246799999999 899999999999988888888999988888765 33455
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCc
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (610)
+..+|..|++.+.+. .++|..+++.|.+.|+.|+..
T Consensus 881 ~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 678999999988432 368999999999999997654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.5e-58 Score=498.72 Aligned_cols=487 Identities=24% Similarity=0.377 Sum_probs=409.1
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH
Q 037713 66 QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145 (610)
Q Consensus 66 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 145 (610)
.++..+|+.+|.+|.+.|++++|+++|+.|...++..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34778999999999999999999999999998665789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
|+++|+++|++++|.++| ++|+.||+++||++|.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf-------------------------------~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLF-------------------------------DEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHH-------------------------------hcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 999998888776555555 5555567777778888888888888888888
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037713 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305 (610)
Q Consensus 226 ~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 305 (610)
++|.+.|+. ||..||..++.+|++.|..+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|++
T Consensus 213 ~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 213 REMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.+++..|.+. |+.||..+|++|+++|
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 9999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC-CCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
+++|++++|.++|++|. +||..+|++|+.+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|+.++|.+++
T Consensus 371 ~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 371 SKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999996 5899999999999999999999999999998644 235689999999999999999999999
Q ss_pred HHHhh-CCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhh---h
Q 037713 465 KLMSV-MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL---F 540 (610)
Q Consensus 465 ~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~ 540 (610)
+.|.+ .|+.|+...-. .++.+....+..+++++ + +++.+..|+..++...+..+.+.+.+ .
T Consensus 450 ~~m~~~~g~~p~~~~y~--------~li~~l~r~G~~~eA~~----~---~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 450 QSMSENHRIKPRAMHYA--------CMIELLGREGLLDEAYA----M---IRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHHHHhcCCCCCccchH--------hHHHHHHhcCCHHHHHH----H---HHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99976 57765542110 11222334455555543 3 34567888887644333332222211 1
Q ss_pred hhhHHHHHHHhhccCCCCCcEEEEccccccCcchHHHHHHhhhcCeeEEE-------eCCCccccccCccc
Q 037713 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV-------RDATRYHHFKDGKC 604 (610)
Q Consensus 541 ~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~-------~d~~~~h~~~~g~c 604 (610)
...++ .+++.+...+..+.+++-+..+|+..+|.++...|..+.+.. --.+..|.|-.|-.
T Consensus 515 ~~~~~---l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 515 LAAEK---LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHH---HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 12222 245554444556667777889999999999999999886532 12345677765543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=5.4e-28 Score=275.74 Aligned_cols=454 Identities=13% Similarity=0.044 Sum_probs=281.5
Q ss_pred HHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcC
Q 037713 6 YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQA 82 (610)
Q Consensus 6 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 82 (610)
+..+...+...++.+.|...+..+.+.... .......++..|.+.|++++|.++++.+.. ++..+|+.+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC
Confidence 334444555667777777777766655422 233455566667777777777777766542 2455667777777777
Q ss_pred CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+++.+ +.+..++..+...|.+.|+.++|...
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766532 2234445555666666677777777777766654 44566666667777777777777777
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037713 163 FDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 163 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 236 (610)
|+++.. .+...+..++..|.+.|++++|..+++++.. .+...|..+...|...|++++|+..|+++.+.. |.
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 633 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PD 633 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 766642 2445566666667777777777777666542 245566666667777777777777777666544 24
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVG 313 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 313 (610)
+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 55556666666666677777777766666543 33455666666666666666666666666653 244556666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 666666666666666666543 33355555666666666666666666666552 34455666666666666666666
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 394 AENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 394 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|.+.|+++ .. +++...++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.+.++.+.+.+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666665 22 2345556666666666666 556666666666666666666666666666666666666666665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.9e-27 Score=271.19 Aligned_cols=454 Identities=13% Similarity=0.016 Sum_probs=370.8
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHc
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQ 81 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~ 81 (610)
.+..+...+...|+++.|.+++..+.+... .+...+..+...+...|++++|.+.|+.+... +...+..++..+.+
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 445556667788899999999988877642 35566777888888899999999998876532 34556777888889
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
.|++++|+++++.+... .+++..++..+...+...|+.++|.+.+.++++.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999988774 35567788888888889999999999999888765 5566777888889999999999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037713 162 VFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235 (610)
Q Consensus 162 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 235 (610)
.|+++.. .+..++..+...+.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++.+.+.. |
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~ 598 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--P 598 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--C
Confidence 9988863 3677888888899999999999999988743 355677888888999999999999999988765 2
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIV 312 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 312 (610)
.+..++..+..++...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 677888888999999999999999999888764 44667788888999999999999999988764 35778888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
.+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+.+. .|+..++..+..++.+.|+++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999988774 446677888888888999999999999988763 455577888888999999999
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 393 EAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 393 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+|.+.++++ ..+.+...+..+...|...|+.++|...|+++++..|+++..+..++.++...|+ .+|...++...+.
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999888887 3334577788888888889999999999999999999888889999999999998 7888888887654
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.3e-31 Score=216.02 Aligned_cols=106 Identities=60% Similarity=1.054 Sum_probs=96.9
Q ss_pred cccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhh--------hhhhhhhhHHHHH
Q 037713 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK--------ERQLFWHSERLAV 548 (610)
Q Consensus 477 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 548 (610)
||||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899866 9999999999998 456677889999999999998877665 5688999999999
Q ss_pred HHhhccCCCCCcEEEEccc-cccCcchHHHHHHhhhcCeeEEEeCCCcccccc
Q 037713 549 AYGLLKSVPGTVLRVVKNL-RVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600 (610)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 600 (610)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=8.2e-20 Score=209.94 Aligned_cols=411 Identities=12% Similarity=0.001 Sum_probs=329.4
Q ss_pred HHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChh---hHH-------
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMPQ--R-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHF---VFA------- 109 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~---~~~------- 109 (610)
.+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~---p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD---PHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCccchhHHHHHHHhhh
Confidence 345667788999999999998753 3 67789999999999999999999999998843 4321 111
Q ss_pred -----HHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHH
Q 037713 110 -----SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAY 181 (610)
Q Consensus 110 -----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 181 (610)
.....+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|++... | +...+..+...|
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12345678899999999999999875 56677888899999999999999999999873 2 456677777777
Q ss_pred HhcCCHHHHHHHHhhCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh
Q 037713 182 ARSGRKKDAMEIFEQAPVRN------------LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249 (610)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~ 249 (610)
. .++.++|...++.++... ...+..+...+...|++++|++.|++..+... .+...+..+...+.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLAQDLR 506 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 4 567899999998876432 22355667788899999999999999998762 46777888899999
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHh
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK----DV---------VSWTSIIVGTAQ 316 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~ 316 (610)
+.|++++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999998754 335555556666778899999999999998642 11 112345667889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
.|+.++|+++++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999882 2445667778889999999999999999999873 34567899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc------chHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 397 LIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS------SYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 397 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.++.. ...|+ ..++..+..++...|++++|.++++++++..|+++. .+..++.++...|++++|...++...
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99987 44554 556677788889999999999999999988765543 55567899999999999999988874
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=8.3e-20 Score=209.89 Aligned_cols=454 Identities=11% Similarity=0.053 Sum_probs=304.1
Q ss_pred HHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC--CCc-chH----------
Q 037713 6 YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDH-VSW---------- 72 (610)
Q Consensus 6 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~---------- 72 (610)
+..-.+.+...++.+.|++.+..++... +.++.++..++..+.+.|+.++|.+.+++..+ |+. ..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 3344455667778888888888777654 23567777788888888888888888887753 322 111
Q ss_pred ------HHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhh-HHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH
Q 037713 73 ------ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV-FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145 (610)
Q Consensus 73 ------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 145 (610)
..+...+.+.|++++|++.|+.+.+.. +|+... ...........++.++|...++.+++.. +.+...+..
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 222345777888888888888887643 333221 1111122234578888888888888765 556677778
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCh------hh-----------------HH---------------------------
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNS------VS-----------------WT--------------------------- 175 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~------~~-----------------~~--------------------------- 175 (610)
+...+...|+.++|...|+++..... .. +.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 88888888888888888877632100 00 00
Q ss_pred -------HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHH----
Q 037713 176 -------AMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL---- 241 (610)
Q Consensus 176 -------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~---- 241 (610)
.....+...|++++|+..|++... .+...+..+...|.+.|++++|+..|++..+.....++...+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 112335667888888888887653 256778888888888888888888888887765321221111
Q ss_pred --------HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHH-
Q 037713 242 --------SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTS- 309 (610)
Q Consensus 242 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~- 309 (610)
......+.+.|++++|...++++.+.. +.+...+..+...|...|++++|++.|++..+ | +...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 122345667788888888888888764 34556677788888888888888888887763 2 2222222
Q ss_pred -----------------------------------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 310 -----------------------------------------IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 310 -----------------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
+...+...|++++|++.|++..+.... +...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 233455678889999999988875322 45566778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH--------------------------------------------HHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL--------------------------------------------LDL 384 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------i~~ 384 (610)
+.+.|++++|...++.+.+.. +.+...+..+ .+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998887632 2222222222 233
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
+...|+.++|.++++.-+ ++...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.+
T Consensus 583 l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555555555322 234455667777888888888888888888888888888888888888888888888888
Q ss_pred HHHhh
Q 037713 465 KLMSV 469 (610)
Q Consensus 465 ~~m~~ 469 (610)
+...+
T Consensus 661 ~~ll~ 665 (1157)
T PRK11447 661 AKLPA 665 (1157)
T ss_pred HHHhc
Confidence 87654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=7e-21 Score=185.99 Aligned_cols=380 Identities=14% Similarity=0.167 Sum_probs=328.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh-HHHHH
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSL 146 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l 146 (610)
..+|..+...+-..|++++|+.+++.|.+ .+| ....|..+..++...|+.+.|.+.|.+.++. .|+.+ ..+-+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 45788999999999999999999999998 556 5677888999999999999999999999875 45544 34455
Q ss_pred HHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHH
Q 037713 147 VDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL---FLWTALVSGLVQSRNEID 220 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 220 (610)
.+..-..|++++|...+.+..+ | =.+.|+.|...+-.+|+.-.|+.-|++...-|+ ..|-.|...|...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 6666678999999999887763 3 357899999999999999999999999876544 688899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037713 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300 (610)
Q Consensus 221 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 300 (610)
|+..|.+..... |.....+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|.+.+++..
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999999988765 3567788888888999999999999999998864 3346789999999999999999999999987
Q ss_pred C--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-
Q 037713 301 R--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL- 375 (610)
Q Consensus 301 ~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~- 375 (610)
. | -..+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.. .+.|+.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHH
Confidence 4 3 4678899999999999999999999998874 555 4678899999999999999999999886 478875
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..|+.+...|-..|+.+.|.+.+.+. .+.|. ...++.|...|...|++.+|++.++.+++++|+.+.+|..++..+.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 88999999999999999999999888 77776 66788999999999999999999999999999999999999888877
Q ss_pred hcchhHHH
Q 037713 454 AAMWQHVS 461 (610)
Q Consensus 454 ~g~~~~a~ 461 (610)
-.+|.+-.
T Consensus 503 vcdw~D~d 510 (966)
T KOG4626|consen 503 VCDWTDYD 510 (966)
T ss_pred HhcccchH
Confidence 77777633
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.7e-18 Score=187.10 Aligned_cols=390 Identities=12% Similarity=0.032 Sum_probs=289.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 037713 72 WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 151 (610)
+......+.+.|++++|+..|++..+ ..|+...|..+..++.+.|+++.|...+...++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 44566677888999999999998887 56788888888888888899999999999888865 556678888888999
Q ss_pred hCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----------------------------
Q 037713 152 KCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---------------------------- 200 (610)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------------- 200 (610)
..|++++|...|...... +......++..+........+...++.-+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998777554321 1111111111111111112222222221110
Q ss_pred -Ch---hhHHHHHHH---HHhCCChHHHHHHHHHHHHcC-CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 037713 201 -NL---FLWTALVSG---LVQSRNEIDAFYSFIEMRREG-VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272 (610)
Q Consensus 201 -~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (610)
+. ..+..+... ....+++++|++.|++..+.+ ..|.+...+..+...+...|+++.|...++.+++.. +.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 011111111 122368999999999998865 232455677788888889999999999999998864 334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 66788899999999999999999998764 3678899999999999999999999999988632 2567777888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhc
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE-P-------TWAALLSACKHH 420 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~ 420 (610)
.+.|++++|...|+...+. .+.+...|+.+..+|...|++++|.+.|++. .+.|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999873 4455788999999999999999999999986 444431 1 122222234457
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|++++|.++++++++++|++...+..++.+|.+.|++++|.+.++...+
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999988899999999999999999999988754
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=2.5e-17 Score=181.29 Aligned_cols=444 Identities=13% Similarity=0.048 Sum_probs=293.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCc--chHHHHHHHHHcCCCchHHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH--VSWASILTAYNQANLPQKTISIF 92 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~ 92 (610)
..|+++.|...+..+++.... ++.++..|...|.+.|+.++|+..+++..+.++ .-|..++..+ +++++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 348899999999998887644 477888899999999999999999888764322 2222222222 6777777777
Q ss_pred HHhHHCCCC-------------------------------------CCChhhHHHH-HHHHhccCCcHHHHHHHHHHHhc
Q 037713 93 STMLALDKL-------------------------------------QPDHFVFASL-VKACGSLGATRLGKQVHACFVLS 134 (610)
Q Consensus 93 ~~m~~~~~~-------------------------------------~pd~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 134 (610)
+++.+..+- .|+..+.... .+.+...++++.+...+..+.+.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 777663311 1112222222 45555667777777777777777
Q ss_pred CCCCChhHHHHHHHHHHh-CCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhhHHH-
Q 037713 135 PFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-----NLFLWTA- 207 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~- 207 (610)
+ +.+..-...|..+|.. .++ +++..++......|...+..+...|.+.|+.++|.+++.+++.- +..+|--
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 6 4445555666667776 355 77777766544557888889999999999999999999876521 0000000
Q ss_pred --------------------------H---HHH-----------------------------------------------
Q 037713 208 --------------------------L---VSG----------------------------------------------- 211 (610)
Q Consensus 208 --------------------------l---i~~----------------------------------------------- 211 (610)
+ +..
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 0 000
Q ss_pred ----------------HHhCCChHHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHhcc-----------------------
Q 037713 212 ----------------LVQSRNEIDAFYSFIEMRRE-GVDIVDPLVLSSIVGACANF----------------------- 251 (610)
Q Consensus 212 ----------------~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~----------------------- 251 (610)
.++.|+.++|.++|+..... +-..++.....-++..+...
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 33456666666666655441 10001111221222222222
Q ss_pred ----------------------------------------ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 037713 252 ----------------------------------------AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 252 ----------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 291 (610)
+..++|...+....... |+......+...+...|++++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence 23334444444444332 333222233444457888888
Q ss_pred HHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 292 AKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 292 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. +++...+..+.......|++++|...+++..+
T Consensus 528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-- 604 (987)
T PRK09782 528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN-- 604 (987)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 8888877653 344556667777788888888888888887753 22233333344455566999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
..|+...|..+..++.+.|++++|...+++. ...|+ ...++.+..++...|+.++|+..++++++.+|+++..+..+
T Consensus 605 -l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 605 -IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred -hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4567888899999999999999999999888 55665 55666777789999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|...++...+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999998888643
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-19 Score=173.91 Aligned_cols=417 Identities=11% Similarity=0.062 Sum_probs=338.1
Q ss_pred HHHHHHhhcCCChHHHHHHHccCCCCC---cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhcc
Q 037713 42 NTLIDAYGKCDLVQYAHHLLEEMPQRD---HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL 118 (610)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~ 118 (610)
..|..-.-+.|+++.|++--...-+.| ....-.+-..+.+..+.+....--....+. .+.-..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHh
Confidence 344555556788888877654443321 222222334566666676655444333332 234667899999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCh--hh-HHHHHHHHHhcCCHHHHHHHHh
Q 037713 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS--VS-WTAMLSAYARSGRKKDAMEIFE 195 (610)
Q Consensus 119 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~ 195 (610)
|+++.|...+..+++.. +..+..|..+..++...|+.+.|...|.+..+-|+ .. .+.+-...-..|++++|...+-
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999876 55688899999999999999999999988875443 32 2334455566899999999888
Q ss_pred hCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 037713 196 QAPVRN---LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272 (610)
Q Consensus 196 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (610)
+..+.+ .+.|+.|...+-.+|+...|+.-|++...... .-...|..+...+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP--~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP--NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC--cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 765433 47899999999999999999999999988662 345678888888999999999999888877654 335
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYA 348 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 348 (610)
..++..|...|-..|.++.|+..+++..+ |+ ...|+.|..++-..|+..+|...|.+.... .|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 67778888889999999999999999875 43 578999999999999999999999998875 444 6778899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 425 (610)
+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++. .++|+ ...++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999998865 4555 477899999999999999999999988 88897 5678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|.+.+.+++..+|.-..++..|+.+|-.+|+..+|..-++...+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999999889999999999999999999999888764
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=5.4e-19 Score=181.14 Aligned_cols=280 Identities=16% Similarity=0.189 Sum_probs=129.1
Q ss_pred HHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCC
Q 037713 78 AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD---DVVKSSLVDMYAKCG 154 (610)
Q Consensus 78 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 154 (610)
.+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445566666666666666532 12334555555666666666666666666655431111 133455555555555
Q ss_pred ChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhCCChHHHHH
Q 037713 155 LPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL--------FLWTALVSGLVQSRNEIDAFY 223 (610)
Q Consensus 155 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~ 223 (610)
++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+.+...+. ..|..+...+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555555542 2333444444444444444444444444322110 112233334444444444444
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 037713 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-- 301 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 301 (610)
.|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.+
T Consensus 202 ~~~~al~~~-------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 202 LLKKALAAD-------------------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHhHC-------------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 444444332 11223333444444444444444444444432
Q ss_pred CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH
Q 037713 302 KD--VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379 (610)
Q Consensus 302 ~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 379 (610)
|+ ..+++.++.+|...|+.++|...++++.+. .|+...+..+...+.+.|++++|..+++.+.+. .|+...+.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~ 319 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFH 319 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHH
Confidence 11 123444444455555555555555554443 233333344444455555555555555444332 34444444
Q ss_pred HHHHHHHh---cCCHHHHHHHHHhC
Q 037713 380 CLLDLLSR---SGHLDEAENLIKAM 401 (610)
Q Consensus 380 ~li~~~~~---~g~~~~A~~~~~~m 401 (610)
.++..+.. .|+.+++..++++|
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHH
Confidence 44444332 23444444444444
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.5e-19 Score=181.09 Aligned_cols=300 Identities=13% Similarity=0.067 Sum_probs=178.5
Q ss_pred HHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCC
Q 037713 147 VDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN-------LFLWTALVSGLVQSR 216 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 216 (610)
...+...|++++|...|+++... +..+|..+...+...|++++|..+++.+.... ...+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33455667777777777776532 33455556666666666666666665544321 123455555566666
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037713 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296 (610)
Q Consensus 217 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 296 (610)
++++|+.+|+++.+.. |++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 6666666666655432 13344444444444444444444444444443321110000
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 037713 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376 (610)
Q Consensus 297 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 376 (610)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +-.....
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 250 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSE 250 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHH
Confidence 01134455566666777777777777776542 223445666667777777777777777777653 1111235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh--
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS-- 453 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 453 (610)
+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|..+++++++..|+++ .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 5677777777777888877777776 4456666666777777788888888888888877777664 44444444432
Q ss_pred -hcchhHHHHHHHHHhhCCCccCCcc
Q 037713 454 -AAMWQHVSKVRKLMSVMEVKKEPGY 478 (610)
Q Consensus 454 -~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (610)
.|+.+++..+++.|.+++++++|.+
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCE
Confidence 4577788888888887777777753
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=1.6e-16 Score=174.90 Aligned_cols=437 Identities=9% Similarity=0.020 Sum_probs=317.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCchHHHHHHH--------hhcCCChHHHHHHHccCCCCC--cchHHH-HHHHHHcCCCc
Q 037713 17 QIALTVKTLHAQIIKLGLHQYGPLPNTLIDA--------YGKCDLVQYAHHLLEEMPQRD--HVSWAS-ILTAYNQANLP 85 (610)
Q Consensus 17 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~ 85 (610)
++...+..+++.+++.... +..++..+... |.+.+....|++ .+...|+ ...... +...|.+.|++
T Consensus 122 ~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 5666666777777666422 34455555554 666666666665 2222332 333333 37889999999
Q ss_pred hHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc-cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 037713 86 QKTISIFSTMLALDKLQPDHFVFASLVKACGS-LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164 (610)
Q Consensus 86 ~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 164 (610)
++|++++.++.+.+ +.+..-...+-.++.. .++ +.+..++.. .+..|..+...+.+.|.+.|+.++|.++++
T Consensus 199 ~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 199 SQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999965 2234445566667766 466 777666442 344688899999999999999999999999
Q ss_pred hcCC-----CChhhHHHHHHHH----------------------------------------------------------
Q 037713 165 SIKL-----KNSVSWTAMLSAY---------------------------------------------------------- 181 (610)
Q Consensus 165 ~m~~-----~~~~~~~~li~~~---------------------------------------------------------- 181 (610)
+++. ++..+|--++.-+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 9872 2222222211111
Q ss_pred -----------------------------------HhcCCHHHHHHHHhhCCC-C-------------------------
Q 037713 182 -----------------------------------ARSGRKKDAMEIFEQAPV-R------------------------- 200 (610)
Q Consensus 182 -----------------------------------~~~g~~~~A~~~~~~~~~-~------------------------- 200 (610)
.+.|+.++|.++|.+... +
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 456777777777654332 0
Q ss_pred --------------------------------------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037713 201 --------------------------------------------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 201 --------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 236 (610)
+...|..+..++.. +++++|+..|.+..... |
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---P 507 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---P 507 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---C
Confidence 11223333334443 56667888777766554 5
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT---SIIVG 313 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~ 313 (610)
+......+..++...|+++.|...++.+... +|+...+..+...+.+.|+.++|...|++..+.++..++ .+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5555445555567899999999999987654 444455667788899999999999999988764333333 33334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
....|++++|+..|++..+. .|+...+..+..++.+.|++++|...++...+. -+.+...+..+...+...|++++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 44569999999999999875 567888999999999999999999999999873 34456888899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|.+.+++. ...| +...+..+..++...|++++|+..++++++++|++.......+.+..+..+++.|.+.++..-..+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999988 5556 467888999999999999999999999999999999999999999999999999999887766544
Q ss_pred Cc
Q 037713 472 VK 473 (610)
Q Consensus 472 ~~ 473 (610)
..
T Consensus 742 ~~ 743 (987)
T PRK09782 742 FD 743 (987)
T ss_pred cc
Confidence 43
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1e-16 Score=176.33 Aligned_cols=398 Identities=11% Similarity=0.019 Sum_probs=270.1
Q ss_pred CchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH
Q 037713 38 GPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114 (610)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~ 114 (610)
+....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 33444556666777888888888877653 233347777778888888888888888877732 2234455566667
Q ss_pred HhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHH
Q 037713 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 191 (610)
+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.|..++|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 778888888888888887764 55555 77777888888888888888887763 2 4556666777777788888888
Q ss_pred HHHhhCCCCChh--------hHHHHHHHHH-----hCCCh---HHHHHHHHHHHHcCCCCCCHh-HHH----HHHHHHhc
Q 037713 192 EIFEQAPVRNLF--------LWTALVSGLV-----QSRNE---IDAFYSFIEMRREGVDIVDPL-VLS----SIVGACAN 250 (610)
Q Consensus 192 ~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~p~~~-t~~----~ll~~~~~ 250 (610)
+.+++... ++. ....++.... ..+++ ++|++.++.+.+.-...|+.. .+. ..+.++..
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 88877665 211 1222222222 12234 678888888876421113221 111 11334456
Q ss_pred cccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhcCChHH
Q 037713 251 FAVLELGKQIHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD-------VVSWTSIIVGTAQHGQAEE 322 (610)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~ 322 (610)
.++.++|...++.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.+ ...+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 68888888888888877532 221 22235678888889999988888875422 2345556667888899999
Q ss_pred HHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 323 TLALYDEMVSAGV-----------KPNE---VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 323 A~~l~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
|..+++++..... .|+. ..+..+...+...|+.++|++.++++.. ..+.+...+..+..++...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 9998888876521 1232 2345566777788888888888888876 3455677888888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 389 GHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 389 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8888888888887 55665 4555566666788888888888888888888887643
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.8e-16 Score=171.32 Aligned_cols=387 Identities=10% Similarity=-0.003 Sum_probs=273.4
Q ss_pred HHHHHhhcCCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccC
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLG 119 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~ 119 (610)
.+.+.|.+.|+++.|.+.|++.. .|+...|..+..+|.+.|++++|++.++...+ ..| +...+..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcC
Confidence 44566677777888887777654 35666677777777777888888887777776 334 4456666777777777
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC-----------------------------CCC
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-----------------------------LKN 170 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------~~~ 170 (610)
++++|..-+..+...+-..+... ..++.-+.+......+...++.-+ +.+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 77777776665544321111111 111111111001111222211111 000
Q ss_pred h---hhHHHHHHHH---HhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH
Q 037713 171 S---VSWTAMLSAY---ARSGRKKDAMEIFEQAPVR------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238 (610)
Q Consensus 171 ~---~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 238 (610)
. ..+..+...+ ...+++++|.+.|++.... +...|+.+...+...|++++|+..|++..+.. |.+.
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcH
Confidence 0 0111111111 2246889999999876532 34678888899999999999999999998865 2456
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHH
Q 037713 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTA 315 (610)
Q Consensus 239 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 315 (610)
..|..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|++..+ | +...|..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 788888899999999999999999998874 45678899999999999999999999999864 3 5677888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--------HHHHHHHHHHHh
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--------QHYTCLLDLLSR 387 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~ 387 (610)
+.|++++|+..|++..+.. +-+...++.+..++...|++++|...|+...+. .|+. ..++.....+..
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999988752 235778888999999999999999999998763 2321 112222334455
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 388 SGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 388 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.|++++|.+++++. ...|+ ...+..+...+...|++++|...|+++.++.+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 79999999999986 55565 4568889999999999999999999999887653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.1e-16 Score=176.16 Aligned_cols=390 Identities=13% Similarity=0.051 Sum_probs=296.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 037713 73 ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152 (610)
Q Consensus 73 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 152 (610)
.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++.+++.. +.+...+..+..++.+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344556678899999999999987622 3455568888899999999999999999998874 5567778889999999
Q ss_pred CCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 037713 153 CGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---NLFLWTALVSGLVQSRNEIDAFYSFI 226 (610)
Q Consensus 153 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 226 (610)
.|++++|...+++... | +.. |..+...+...|+.++|...++++... +...+..+...+...|..++|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999863 3 455 888999999999999999999987643 55667778888999999999999987
Q ss_pred HHHHcCCCCCCHh------HHHHHHHHHh-----ccccH---HHHHHHHHHHHHh-CCCCchh-H-HHH---HHHHHHhc
Q 037713 227 EMRREGVDIVDPL------VLSSIVGACA-----NFAVL---ELGKQIHGLVIAL-GYESCLF-I-SNA---IVDMYAKC 286 (610)
Q Consensus 227 ~m~~~~~~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~y~~~ 286 (610)
.... . |+.. ....++.... ..+.+ +.|...++.+.+. ...|+.. . ... .+.++...
T Consensus 175 ~~~~---~-p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 175 DANL---T-PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred hCCC---C-HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 6654 1 3320 1111222221 12233 6677778877764 2223221 1 111 12344577
Q ss_pred CCHHHHHHHHHhcCCCC---h-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHH
Q 037713 287 SDIIAAKDIFGRMRRKD---V-VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP---NEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 287 g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++....... .......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999998632 1 122225778999999999999999987653211 1345666777889999999999
Q ss_pred HHHHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 360 KLFKSMIEDYG----------ITPS---LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 360 ~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
++++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999976311 1122 235567888999999999999999998 3344 5677888888999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+|++.++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998754
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.5e-16 Score=171.30 Aligned_cols=348 Identities=10% Similarity=-0.009 Sum_probs=207.8
Q ss_pred cCCChHHHHHHHccCCCC------CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHH
Q 037713 50 KCDLVQYAHHLLEEMPQR------DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123 (610)
Q Consensus 50 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~ 123 (610)
+..+++.---.|..-++. +..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHH
Confidence 445555554455544421 23334455667778888888888888877743 2233344445555666788888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 037713 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198 (610)
Q Consensus 124 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 198 (610)
|...++.+++.. |.+...+..+...+.+.|++++|...|++... | +...|..+...+...|+.++|...++++.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 888888887765 55566677777777777777777777766652 2 34455555555556666666555555432
Q ss_pred CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 037713 199 VR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277 (610)
Q Consensus 199 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (610)
.| +...+..+ ..+.+.|++++|+..++.+.+... .++.....
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~------------------------------------~~~~~~~~ 216 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA------------------------------------LERQESAG 216 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC------------------------------------CcchhHHH
Confidence 11 22222222 224555555555555555544332 12222223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEE----TLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
.+...+.+.|++++|...|++... .+...+..+...+...|++++ |+..|++..+... .+...+..+...+.
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~ 295 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 334455555666666655555542 244555666666666666664 6777777766422 24556667777777
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCchhHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWA-ALLSACKHHRNTEMGTR 428 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~ 428 (610)
..|++++|...++...+. -+.+...+..+..+|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|..
T Consensus 296 ~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777777653 2333456666777777778888877777776 3455543333 34455777788888888
Q ss_pred HHHHHhcCCCCC
Q 037713 429 VANHLLSLKPED 440 (610)
Q Consensus 429 ~~~~~~~~~p~~ 440 (610)
.++++++..|++
T Consensus 374 ~l~~al~~~P~~ 385 (656)
T PRK15174 374 VFEHYIQARASH 385 (656)
T ss_pred HHHHHHHhChhh
Confidence 888888777765
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=3.7e-15 Score=161.04 Aligned_cols=416 Identities=11% Similarity=0.023 Sum_probs=195.7
Q ss_pred hhcCCChHHHHHHHccCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHH
Q 037713 48 YGKCDLVQYAHHLLEEMPQRDHV---SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124 (610)
Q Consensus 48 ~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a 124 (610)
..+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.... ..........+...+...|+++.|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666555432211 1225555555556666666666555411 011111122223344455666666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHh--cCCHHHHHHHHhhCCCC--
Q 037713 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR--SGRKKDAMEIFEQAPVR-- 200 (610)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-- 200 (610)
.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 66666665554 33445555555566666666666666666554332222222223322 33333455555555422
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH------HHHHHHHH-----hcccc---HHHHHHHHHHHH
Q 037713 201 -NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV------LSSIVGAC-----ANFAV---LELGKQIHGLVI 265 (610)
Q Consensus 201 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t------~~~ll~~~-----~~~~~---~~~a~~~~~~~~ 265 (610)
+...+..+..++.+.|-...|+++..+-... +. +...- ....+..- ..... .+.+..-++.+.
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~-~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS-AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC-HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3344455555555666655555444332110 00 00000 00000000 00111 222222233322
Q ss_pred Hh-CC-CCchhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 037713 266 AL-GY-ESCLFI-SNA---IVDMYAKCSDIIAAKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG- 334 (610)
Q Consensus 266 ~~-~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 334 (610)
.. +- ++.... ..+ .+-++.+.|+..++++.|+.+..+ ...+--++.++|...+++++|+.+|+.+....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 21 11 111111 112 223444556666666666666532 22344455566666666666666666654432
Q ss_pred ----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 037713 335 ----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG----------ITPSL---QHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 335 ----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~li~~~~~~g~~~~A~~~ 397 (610)
..++......|..++...+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111222234556666666666666666666654210 01111 2333445555566666666666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 398 IKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 398 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++++ ...| |...+..+...+...|.+..|++.++.+..++|++......++..+...|+|.+|.++.+...
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6665 2222 455555555556666666666666666666666666666666666666666666665554443
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=5.5e-16 Score=167.02 Aligned_cols=329 Identities=12% Similarity=-0.019 Sum_probs=229.8
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
....++..+.+.|+++.|..++...+... +.+......++......|++++|...|+++...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---------------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---------------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----------------
Confidence 34445555666677777777766666654 3333344444455555666665555555543210
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 187 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
..+...|..+...+.+.|++++|+..|+++.+.. |.+...+..+..++...|+.+.|...+..+..
T Consensus 107 ------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 107 ------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred ------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1133445555555556666666666666655543 23455555566666666666666666665554
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
.... +...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|++..+... .+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHH
Confidence 4322 22223223 2367789999999999887643 334455567788999999999999999998642 356777
Q ss_pred HHHHHHHhccCCHHH----HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 037713 343 VGLIYACSHVGLVGK----GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSA 416 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 416 (610)
..+..++...|++++ |...|+.+.+. .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888999999999986 89999998773 3445788999999999999999999999988 45565 5567778888
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
+...|++++|...++++.+.+|+++..+..++.++...|++++|...++...+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887667777889999999999999999876543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.4e-14 Score=156.67 Aligned_cols=423 Identities=12% Similarity=0.036 Sum_probs=320.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchH-HHH--HHHHHcCCCchHHH
Q 037713 13 CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW-ASI--LTAYNQANLPQKTI 89 (610)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~l--i~~~~~~g~~~~A~ 89 (610)
..+.|+...|...+..+++......+.++ .++..+...|+.++|+..+++...|+...+ ..+ ...+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45789999999999999887533223455 888999999999999999999887744443 333 34677889999999
Q ss_pred HHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC-
Q 037713 90 SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL- 168 (610)
Q Consensus 90 ~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 168 (610)
++|+++.+.. +-|...+..+...+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 123 ely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999854 224556667778888999999999999999876 45555565566666567777679999999973
Q ss_pred -C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHH----HHHHHHH---------hCCC---hHHHHHHHHHHH
Q 037713 169 -K-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-NLFLWT----ALVSGLV---------QSRN---EIDAFYSFIEMR 229 (610)
Q Consensus 169 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~li~~~~---------~~g~---~~~A~~~~~~m~ 229 (610)
| +...+..+...+.+.|-...|.++..+-+.- +...+. ..+.-.+ ...+ .+.|+.-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 5677888999999999999999999886632 111110 0111111 1122 345666666655
Q ss_pred Hc-CCCCCCHhHH----HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 037713 230 RE-GVDIVDPLVL----SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-- 302 (610)
Q Consensus 230 ~~-~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 302 (610)
.. +..|+....| .=.+.++...++..++...++.+...+.+....+-.++.++|...++.++|..+|.++...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2222322222 2345677888999999999999999987766778899999999999999999999998542
Q ss_pred -------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHhccCCHHHHHHH
Q 037713 303 -------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-------------KPNEV-TFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 303 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~-t~~~ll~a~~~~g~~~~a~~~ 361 (610)
+......|.-+|...+++++|..+++++.+.-. .||-. .+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233357789999999999999999999987321 12222 234456778899999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
++++.. .-+-|......+.+.+...|.+.+|++.++.. .+.|+ ..+......++...+++++|..+.+.+.+..|+
T Consensus 439 le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 439 LEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 999976 46778899999999999999999999999877 55665 455667777788999999999999999999999
Q ss_pred CCc
Q 037713 440 DPS 442 (610)
Q Consensus 440 ~~~ 442 (610)
++.
T Consensus 517 ~~~ 519 (822)
T PRK14574 517 DIP 519 (822)
T ss_pred chh
Confidence 863
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.3e-13 Score=128.51 Aligned_cols=396 Identities=13% Similarity=0.124 Sum_probs=251.9
Q ss_pred HHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhh--cCCCh-------------------------HHHHH
Q 037713 7 LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG--KCDLV-------------------------QYAHH 59 (610)
Q Consensus 7 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~-------------------------~~A~~ 59 (610)
+.+++. ...+.+.++--++++|...|.+.++.+--.|+...+ ...++ +-|.
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd- 197 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD- 197 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-
Confidence 334443 345778888889999999988777666555443322 11111 1122
Q ss_pred HHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC
Q 037713 60 LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139 (610)
Q Consensus 60 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 139 (610)
++-+...++..+|.+||.++++-...+.|.+++++-.+.. .+.+..+||.+|.+-+ +..++.+..+|+...+.||
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 3333333466788899999998888899999998887765 6788889998887754 3344788888888888999
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhC
Q 037713 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP----VRNLFLWTALVSGLVQS 215 (610)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 215 (610)
..|+|+++.+..+.|+++.|++.+ .+++.+|+ +|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 999999999999999888776643 33333332 56677888888888877
Q ss_pred CChHH-HHHHHHHHHHc----C---CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC----CCCc---hhHHHHHH
Q 037713 216 RNEID-AFYSFIEMRRE----G---VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG----YESC---LFISNAIV 280 (610)
Q Consensus 216 g~~~~-A~~~~~~m~~~----~---~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li 280 (610)
+++.+ |..++.+.+.. . +.|.|...|...++.|.+..+.+.|.+++....... +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 77644 44455554432 1 223567788999999999999999999998775431 2232 24466677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-H
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-V 355 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~ 355 (610)
.+.+.....+.-...|+.|.. |+..+-..++.+..-.|.++-.-+++.+|+..|..-+...-.-++.-+++..- .
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCC
Confidence 788888888888888888874 56777777888888888888888888888887644444333333333333220 0
Q ss_pred --------HH-----HHHHHHHh---HHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHH
Q 037713 356 --------GK-----GRKLFKSM---IED-YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPDEPTWA 411 (610)
Q Consensus 356 --------~~-----a~~~~~~~---~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~ 411 (610)
.. |..+++.. .++ ..........++..-.+.|.|+.++|.++|.-. +..|......
T Consensus 486 ~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 00 00111000 000 012223345556666666666666666665443 2333333333
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
-++.+....++...|..+++-+...
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 4445555555566666665555433
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=7.5e-14 Score=144.53 Aligned_cols=443 Identities=11% Similarity=0.077 Sum_probs=289.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCC------cchHHHHHHHHHcCCCchHHHHHH
Q 037713 19 ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD------HVSWASILTAYNQANLPQKTISIF 92 (610)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 92 (610)
...|.+++...-+.. ..+|.+.|.|.+.|.-.|++..+..+...+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 334444444443332 2356677777777777777777777766655322 334666777777777777777777
Q ss_pred HHhHHCCCCCCChhhHHH--HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCC----ChHHHHHHHHhc
Q 037713 93 STMLALDKLQPDHFVFAS--LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG----LPNNARAVFDSI 166 (610)
Q Consensus 93 ~~m~~~~~~~pd~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 166 (610)
.+..+ ..||.+++.. |...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+.
T Consensus 331 ~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 331 MESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 76665 3455544443 4566677777777777777777653 455566666666666664 455666666655
Q ss_pred CCC---ChhhHHHHHHHHHhcCCH------HHHHHHHhh-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc---CC
Q 037713 167 KLK---NSVSWTAMLSAYARSGRK------KDAMEIFEQ-APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE---GV 233 (610)
Q Consensus 167 ~~~---~~~~~~~li~~~~~~g~~------~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 233 (610)
..+ |+..|-.+...|....-+ ..|..++.. +....+...|.+...+...|.+++|...|...... ..
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 533 555666655555443332 223322222 22335567777777888888888888888877654 11
Q ss_pred CCCCH------hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh
Q 037713 234 DIVDP------LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDV 304 (610)
Q Consensus 234 ~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 304 (610)
. +|. .+--.+....-..++.+.|.+.|..+.+.. +.-+..|--|+-+.-..+...+|...++.... .|+
T Consensus 487 n-~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 487 N-KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred C-ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 1 233 122234444455667788888888877753 11122222222222233567778888877763 567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSH------------VGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~ 371 (610)
..|+-+...+.....+..|.+-|...... ...+|..+..+|.+.|.. .+..++|+++|.+..+ .-
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--ND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cC
Confidence 78888887888888888888877665542 233677777777776553 2456788888888876 34
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC--CCCCcchHhH
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK--PEDPSSYILL 447 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 447 (610)
+.|...-+-+.-.++..|++.+|..+|.+. ....+..+|-.+...|...|++-.|+++|+..++.. .+++.....|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 557777788888899999999999999988 223355678999999999999999999999988543 3466778899
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.++.+.|+|.+|.+........
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999887766543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.3e-14 Score=137.59 Aligned_cols=439 Identities=12% Similarity=0.066 Sum_probs=304.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhCCCCCCchH-HHHHHHhhcCCChHHHHHHHccCC----CCC----cchHHHHHHHH
Q 037713 9 RLRVCARHQIALTVKTLHAQIIKLGLHQYGPLP-NTLIDAYGKCDLVQYAHHLLEEMP----QRD----HVSWASILTAY 79 (610)
Q Consensus 9 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~----~~~----~~~~~~li~~~ 79 (610)
+-+.+.......+|...++.+++....|+.-.. -.+-+.+.+...+..|++.++... .-+ .-..|.+--.|
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455556677888888888888877775433 234567788889999999876443 222 22345555578
Q ss_pred HcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCh------------hHHHHHH
Q 037713 80 NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD------------VVKSSLV 147 (610)
Q Consensus 80 ~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------------~~~~~li 147 (610)
.+.|.++.|+..|+...+ ..|+..+-..|+-++...|+.+..++.|..|+.....+|. ...|.-+
T Consensus 287 iq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 899999999999999888 4688877666776677789999999999999876433332 2222211
Q ss_pred -----HHHHhCCC--hHHHHHHHHhcC----CCChh---hH----------H--------HHHHHHHhcCCHHHHHHHHh
Q 037713 148 -----DMYAKCGL--PNNARAVFDSIK----LKNSV---SW----------T--------AMLSAYARSGRKKDAMEIFE 195 (610)
Q Consensus 148 -----~~~~~~g~--~~~A~~~~~~m~----~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~ 195 (610)
.-+-+..+ .+++.-.--++. .+|-. -| . .-..-|.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111111 122221111222 22210 01 0 01123578899999988887
Q ss_pred hCCCCChhhH----HHH-HHHHHhC-CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC
Q 037713 196 QAPVRNLFLW----TAL-VSGLVQS-RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269 (610)
Q Consensus 196 ~~~~~~~~~~----~~l-i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 269 (610)
-...+|..+- |.| +--|.+- .++.+|.+.-+..+...- -++.....--......|++++|.+.+.++....-
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 7665544322 222 2223333 346666666665544321 2333333333334567899999999999987643
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
......|| +.-.+-+.|++++|+..|-++. ..++...-.+...|-...+..+|++++.+.... ++-|...+..|.
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 33333343 3445778999999999998775 467778888888999999999999999877654 455677888899
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSAC-KHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~ 424 (610)
..|-+.|+-.+|.+.+-.--. -++.+.++..-|..-|....-+++|...|++. -+.|+..-|..++..| ++.|+++
T Consensus 600 dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999998765433 35668899999999999999999999999998 6789999999998885 6789999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+|..+++......|.+......|++++...|.
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999887774
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.7e-12 Score=133.22 Aligned_cols=360 Identities=11% Similarity=0.031 Sum_probs=189.7
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHhcCCC--C--hhhHHHHHH
Q 037713 106 FVFASLVKACGSLGATRLGKQVHACFVLSPFCDD--DVVKSSLVDMYAKCGLPNNARAVFDSIKLK--N--SVSWTAMLS 179 (610)
Q Consensus 106 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--~~~~~~li~ 179 (610)
...+.|-+-+.-.|+...+..+...+.+...... ...|--+..+|-..|++++|...|....+. | +..+--+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 3344444444444555555555444444321111 112333444555555555555555444321 1 222333444
Q ss_pred HHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 180 AYARSGRKKDAMEIFEQAPVR---NLFLWTALVSGLVQSR----NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
.|.+.|+++.|...|+.+... +..+...|...|+..+ ..+.|..++.+..+.- |.|...|..+...+-...
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcC
Confidence 455555555555555544321 2233334444444443 2233333333333322 134444444444333222
Q ss_pred cHHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ch------hHHHHHHHHHH
Q 037713 253 VLELGKQIHGLVI----ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-------DV------VSWTSIIVGTA 315 (610)
Q Consensus 253 ~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~ 315 (610)
-+ .+..++..+. ..+-++.+.+.|.+...+...|+++.|...|++.... |. .+--.+...+-
T Consensus 429 ~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 PW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred hH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 22 1233333222 2343455566666666666667777766666655421 11 11112333344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
..++.+.|.+.|...... .|+- ..|..++...-..+...+|...+..... ....++..++.+.+.+.+...+..|
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhccc
Confidence 455666666666666654 3332 2233333222234566677777777665 3445555666666677777777777
Q ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHh------------cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchh
Q 037713 395 ENLIKAM----PFEPDEPTWAALLSACKH------------HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458 (610)
Q Consensus 395 ~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 458 (610)
.+-|+.. ...+|+.+.-+|.+.|.. .+..++|++.|.+++..+|.|..+-+-++-+++..|+|.
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 6644333 334677776666665532 356788899999999999998888888888999999999
Q ss_pred HHHHHHHHHhhCCC
Q 037713 459 HVSKVRKLMSVMEV 472 (610)
Q Consensus 459 ~a~~~~~~m~~~~~ 472 (610)
+|..+|...++...
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987655
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=7.3e-11 Score=117.45 Aligned_cols=454 Identities=11% Similarity=0.071 Sum_probs=246.3
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCCchHH
Q 037713 12 VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYNQANLPQKT 88 (610)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A 88 (610)
+.......+.|+-++.+.++.- +.+. -|.-+|++..-++.|.+++.+.. ..+...|.+-...=-++|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3344455566666666666552 1122 23334555566677777765544 33566666655555566666666
Q ss_pred HHHHHH----hHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhCCChHHHHHH
Q 037713 89 ISIFST----MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD--DVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 89 ~~~~~~----m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
..+..+ +...| +..+...|..=..+|-..|..-.+..+....+..|+... ..+|+.-.+.+.+.+.++-|+.+
T Consensus 460 ~kii~rgl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 460 EKIIDRGLSELQANG-VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 655543 33344 666666666656666666666666666666665554332 33555555666666666666666
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037713 163 FDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 163 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 236 (610)
|....+ .+...|...+..=-..|..+.-..+|.+... +..+.|-.....+-..|+...|..++.+..+... .
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p--n 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP--N 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--C
Confidence 655442 2344454444444444444444444444321 1233344444444444555555555544444331 2
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhH----------------------------------HHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI----------------------------------SNAIVDM 282 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------------~~~li~~ 282 (610)
+...+...+..-.....++.|+.++...... .++..+ |-.+...
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 3344444444444444455555544444332 233444 4444444
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 283 YAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
|-+.++++.|...|..=.+ | .+..|-.+...=-+.|..-.|..+|++.+-.+.+ |...|...|+.-.+.|+.++|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHH
Confidence 4444444444444443332 2 2233444444444444455555555544443322 4444445555555555555555
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.++.+..+ .++.+...|..-|.+..+.++-..+...+++- +-|+.....+...+....+++.|..-|+++++.+|+
T Consensus 774 ~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 774 LLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 55444444 23334444444444444444433333333333 346666667777788889999999999999999999
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEE
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 482 (610)
+..++..+-..+.+.|.-++-.++++..... .|.-|..|..
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 9999999999999999999988998887643 2334555543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=5.2e-15 Score=143.73 Aligned_cols=257 Identities=15% Similarity=0.109 Sum_probs=113.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 287 (610)
+...+.+.|++++|++++.+......+|.|...+..+...+-..++.+.|...++.+.+.+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355667778888888888654443322134444555555666788888888888888776533 55667777777 6889
Q ss_pred CHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037713 288 DIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 288 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
++++|.+++...-+ ++...+..++..+.+.|+++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998877643 567778888999999999999999999987643 345677788888999999999999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 365 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
..+. .+.|......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...+++..+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9874 3335788889999999999999988888776 22345667889999999999999999999999999999999
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
....+++++...|+.++|.+++...-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=9.7e-12 Score=128.37 Aligned_cols=328 Identities=13% Similarity=0.146 Sum_probs=196.9
Q ss_pred cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037713 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI---KLKNSVSWTAMLSAYARSGRKKDAMEIF 194 (610)
Q Consensus 118 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (610)
.|++++|..++.++++.. +.....|-.|...|-..|+.+++...+-.. ...|..-|-.+.....+.|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 366666666666666654 455556666666666666666665544322 2335555666666666666666666666
Q ss_pred hhCCCCChhhHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 037713 195 EQAPVRNLFLWT---ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271 (610)
Q Consensus 195 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (610)
.+..+.++.-|- --+..|-+.|+...|++.|.++.+...+ .|..-+..++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i-------------------------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLI-------------------------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHH--------------------------
Confidence 655443332222 2234555566666666666666554421 1211111111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------------
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG------------ 334 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ 334 (610)
-..+..|...++-+.|.+.++.... -+...++.++..|.....++.|......+....
T Consensus 284 -----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 284 -----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred -----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1122333334444444444444332 123344455555555555555555555544411
Q ss_pred ---------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 335 ---------------VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI--TPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 335 ---------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
+.++... .-+.-++.+....+....+.....+. .+ .-+...|.-+.++|...|++.+|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222222 11222334444444444444444443 53 33568899999999999999999999
Q ss_pred HHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCcc
Q 037713 398 IKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474 (610)
Q Consensus 398 ~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (610)
|..+ +..-+...|..+...|...|.++.|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..+..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9998 2223577999999999999999999999999999999999999999999999999999999998876333223
Q ss_pred CCcccE
Q 037713 475 EPGYSY 480 (610)
Q Consensus 475 ~~~~s~ 480 (610)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 345554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1.4e-10 Score=119.90 Aligned_cols=436 Identities=11% Similarity=0.051 Sum_probs=245.0
Q ss_pred CChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccC---CCCCcchHHHHHHHHHcCCCchHHHHHHH
Q 037713 17 QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM---PQRDHVSWASILTAYNQANLPQKTISIFS 93 (610)
Q Consensus 17 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 93 (610)
|+++.|..++..+++... .+...|-+|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 899999999999988763 35667888999999999999888766433 34466778888888888899999999998
Q ss_pred HhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH----HHHHHHhCCChHHHHHHHHhcCC-
Q 037713 94 TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS----LVDMYAKCGLPNNARAVFDSIKL- 168 (610)
Q Consensus 94 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~- 168 (610)
+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 888853 34444444445667788888888888888887653333322222 34556667777888887776653
Q ss_pred -C---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---------------------------------------------
Q 037713 169 -K---NSVSWTAMLSAYARSGRKKDAMEIFEQAPV--------------------------------------------- 199 (610)
Q Consensus 169 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------------------------- 199 (610)
. +...++.++..|.+...++.|......+..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1 345667777777666666666655433221
Q ss_pred ----------------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHH
Q 037713 200 ----------------------RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257 (610)
Q Consensus 200 ----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 257 (610)
.++..|.-+..+|.+.|++.+|+.+|..+.....- -+...|-.+..++-..|..++|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHH
Confidence 01122333444455555555555555555444322 3344455555555555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------------hHHHHHHHHHHhcCChHHHHH
Q 037713 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV------------VSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~g~~~~A~~ 325 (610)
.+.++.++... +.+..+--+|...|-+.|+.++|.+++..+..||. ..--.....+.+.|+.++=+.
T Consensus 469 ~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55555555442 22233333444445555555555555555443331 111112233444455444444
Q ss_pred HHHHHHHcCCC-----CCH-----------------HHHHHHHHHHhccCCHHHHHHHHHH-----hHHhcCCCCC--HH
Q 037713 326 LYDEMVSAGVK-----PNE-----------------VTFVGLIYACSHVGLVGKGRKLFKS-----MIEDYGITPS--LQ 376 (610)
Q Consensus 326 l~~~m~~~g~~-----p~~-----------------~t~~~ll~a~~~~g~~~~a~~~~~~-----~~~~~~~~~~--~~ 376 (610)
+-..|...+.+ |+. .+...++.+-.+.++.....+.... .....++..+ -.
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 44444332110 100 0001111111111111000000000 0000111111 13
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCCH---HHHHHHHHHHHhcCchhHHHHHHHHHhcC-----CCCCCcc
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM----P-FEPDE---PTWAALLSACKHHRNTEMGTRVANHLLSL-----KPEDPSS 443 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 443 (610)
.+.-++..+.+.|++++|+.+...+ - ..++. ..-...+.++...+++..|...++.++.. +|.-+..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4566788899999999999998877 1 12222 12334566678899999999999999865 5555556
Q ss_pred hHhHHHHhhhhcch
Q 037713 444 YILLSNVYASAAMW 457 (610)
Q Consensus 444 ~~~l~~~~~~~g~~ 457 (610)
|++..+...+.|+-
T Consensus 708 ~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555555543
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.4e-11 Score=116.02 Aligned_cols=386 Identities=13% Similarity=0.041 Sum_probs=257.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 037713 72 WASILTAYNQANLPQKTISIFSTMLALDKLQPD-HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD-DVVKSSLVDM 149 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 149 (610)
+-...+-|.++|++++|++.|.+.++ ..|| +..|...-.+|...|+++...+.-...++.. |+ +-.+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 34445567889999999999999998 6788 6777777777889999999988888887754 44 4566667778
Q ss_pred HHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------------------------
Q 037713 150 YAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL------------------------ 202 (610)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------ 202 (610)
+-..|++++|+.=..-.- .-+-.+-..++.-..+.--..++.+-+..-..|.+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 888888888764211000 00000111111111111112222333321111110
Q ss_pred --hhHHHHHHHHHh--CC---ChHHHHHHHHHHHHcCCCCC-----CH------hHHHHHHHHHhccccHHHHHHHHHHH
Q 037713 203 --FLWTALVSGLVQ--SR---NEIDAFYSFIEMRREGVDIV-----DP------LVLSSIVGACANFAVLELGKQIHGLV 264 (610)
Q Consensus 203 --~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~~~~p-----~~------~t~~~ll~~~~~~~~~~~a~~~~~~~ 264 (610)
.+...+..++-. .+ .+.+|.+.+.+-.......+ |. .+.......+.-.|+.-.+.+-++.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 111122221111 11 23344333333211110001 11 11111112233457788888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 265 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
++....+ ...|--+..+|....+.++..+.|+...+ .|..+|..-.+.+.-.+++++|..=|++.+..... +...
T Consensus 353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 8875433 33366777889999999999999998864 46778888888888889999999999999875322 5677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD---------EPTWA 411 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~ 411 (610)
|..+..+.-+.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .++|. +.+--
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 77777778889999999999999988 46677889999999999999999999999887 44443 22222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.++-.- =.+++..|..+++++++++|....+|..|+.+-.+.|+.++|.++|+.-
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233222 2389999999999999999999899999999999999999999999875
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=6.2e-11 Score=112.30 Aligned_cols=347 Identities=11% Similarity=0.063 Sum_probs=243.8
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCC----CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ----RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ 110 (610)
+-+..++..||...+|....+.|+.++++-.. -+..++|.+|.+-.- ....++..+|.... +.||..|||+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk-m~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK-MTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh-cCCchHhHHH
Confidence 44677899999999999999999999998763 377788888865432 22368899999888 9999999999
Q ss_pred HHHHHhccCCcHH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH-HHHHHHhcC--------C----CChhh
Q 037713 111 LVKACGSLGATRL----GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN-ARAVFDSIK--------L----KNSVS 173 (610)
Q Consensus 111 ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~--------~----~~~~~ 173 (610)
++++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..++.++. + .|..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999999888754 444444432 1 25566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVR-----------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~ 242 (610)
+.+.++.|....+.+-|.++-.-.... ...-|..+....++....+.-+.+|..|.-.-.- |+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~-p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF-PHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec-CCchhHH
Confidence 778888888999999998876654422 1234667778888999999999999999877665 9999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChH
Q 037713 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH-GQAE 321 (610)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 321 (610)
.++.+....+.++....++..++..|.........-++..+++.. +.|+...-..+-.+.++. -++.
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988875443333333333333221 122222111111111110 0111
Q ss_pred HH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHH
Q 037713 322 ET-LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT---CLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 322 ~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~ 397 (610)
++ ...-.+|.+.. ......+.++-.+.+.|..++|.+++..+.+++.--|.....+ -+++.-.+......|...
T Consensus 506 e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 11 22223444443 3444566666678889999999999988866544444444444 455555667777777777
Q ss_pred HHhC
Q 037713 398 IKAM 401 (610)
Q Consensus 398 ~~~m 401 (610)
++-|
T Consensus 584 lQ~a 587 (625)
T KOG4422|consen 584 LQLA 587 (625)
T ss_pred HHHH
Confidence 7766
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8.4e-11 Score=112.68 Aligned_cols=331 Identities=9% Similarity=0.017 Sum_probs=248.9
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHHHHHHHH
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF-LWTALVSGLV 213 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~ 213 (610)
+...|.+.+-...-.+-+.|..+.|...|......-+..|.+.+....-..+.+.+..+....+..+.. .=--+..++-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 445666666556666778888899999888887665666666666555556666666655555543221 1122345666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~ 291 (610)
...+.+++++-.+.....|+. .+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.-..+.++.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 667888999888888888874 4444445555556678899999999999998731 1256677766533322222222
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037713 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 292 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 371 (610)
--...-.+.+--+.|...+.+-|+-.++.++|...|++..+.+.+ ....|+.+..-|....+...|.+-++.+++ -.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 122222333445667777888889999999999999999886433 456788888999999999999999999987 34
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
+.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|.+++..+..+..++..|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 557799999999999999999999999998 6677 68899999999999999999999999999888777789999999
Q ss_pred HhhhhcchhHHHHHHHHHhh
Q 037713 450 VYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~ 469 (610)
+|.+.++.++|...++...+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999887654
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=7.3e-11 Score=120.13 Aligned_cols=247 Identities=14% Similarity=0.032 Sum_probs=137.1
Q ss_pred HhcCCHHHHHHHHhhCCCCC--hhhHH--HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHH
Q 037713 182 ARSGRKKDAMEIFEQAPVRN--LFLWT--ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257 (610)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~--~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 257 (610)
.+.|+.+.|...|.++.+.+ ..... .....+...|++++|...++++.+... -++.....+...+.+.|+++.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555543321 11111 123445555666666666655555442 3445555555555555666666
Q ss_pred HHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 037713 258 KQIHGLVIALGYESCL-------FISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 258 ~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
..++..+.+.+..++. .++..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6555555555433221 1222233333334445555666666553 35666666677777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.. ...|+
T Consensus 287 ~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 287 LDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 666653 334321 1233334456677777777666653 3344555666667777777777777777666 55666
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
..++..+...+.+.|+.++|.+++++.+.+
T Consensus 361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 361 AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666677777777777777666543
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.4e-10 Score=118.68 Aligned_cols=253 Identities=13% Similarity=0.022 Sum_probs=153.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccH
Q 037713 179 SAYARSGRKKDAMEIFEQAPV--R--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254 (610)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 254 (610)
..+.+.|+.+.|.+.+.+..+ | +....-.....+.+.|++++|.+.++.+.+..+ -++..+..+...+...|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P--~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP--RHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhH
Confidence 334444555555555544321 1 112222335556666666666666666666652 3555666666666667777
Q ss_pred HHHHHHHHHHHHhCCCCchhH-------HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHH
Q 037713 255 ELGKQIHGLVIALGYESCLFI-------SNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~-------~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 324 (610)
+.+.+.+..+.+.+..+.... +..++..-......+...+.+...++ .+...+..+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 777776666666654332221 11112111222234455555666553 37788888888888899999999
Q ss_pred HHHHHHHHcCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-
Q 037713 325 ALYDEMVSAGVKPNEVT---FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA- 400 (610)
Q Consensus 325 ~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 400 (610)
+++++..+. .||... ...........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+.
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 998888875 344332 11122223345677778888877766432222225666778888888888888888883
Q ss_pred -C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 401 -M-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 401 -m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
. ...|+...+..+...+.+.|+.++|.+++++.++
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 5678887777888888888888888888887653
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.4e-10 Score=110.46 Aligned_cols=418 Identities=11% Similarity=0.074 Sum_probs=263.6
Q ss_pred HHHHHhhcCCChHHHHHHHccCCC----CCcch-HHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC--Chhh----HHHH
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMPQ----RDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQP--DHFV----FASL 111 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--d~~~----~~~l 111 (610)
.|.+-|.......+|+..++-+.+ ||.-. --.+-..+.+...+.+|+..|+-.+.. .| +..+ .+.+
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhhHHHHHhhc
Confidence 344455555566666666665543 22211 112334556666777888877766653 23 2222 2223
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC----------------CChhhHH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL----------------KNSVSWT 175 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~~~~~~~ 175 (610)
.-.+.+.|.++.|..-|+...+. .|+..+.-.|+-++..-|+-++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 33356778888888888887765 46666655566677777888888888877751 1222222
Q ss_pred HH-----HHHHHhcCC--HHHHH----HHHhhCCCCChh---hH----------HHH--------HHHHHhCCChHHHHH
Q 037713 176 AM-----LSAYARSGR--KKDAM----EIFEQAPVRNLF---LW----------TAL--------VSGLVQSRNEIDAFY 223 (610)
Q Consensus 176 ~l-----i~~~~~~g~--~~~A~----~~~~~~~~~~~~---~~----------~~l--------i~~~~~~g~~~~A~~ 223 (610)
.. +.-.-+... -++++ ++..-+..++-. -| ..| ..-|.++|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 22 222222211 11221 111111222210 01 111 123788999999999
Q ss_pred HHHHHHHcCCCCCCHhH--HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037713 224 SFIEMRREGVDIVDPLV--LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 301 (610)
++.-..+..-+ .-... -..++.......++..|.++-..++... .-+....+.-.+.-...|++++|.+.+.+...
T Consensus 441 ilkv~~~kdnk-~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKKDNK-TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhccch-hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 99888765433 21111 1222333333446677777666555432 11222222222233457999999999999998
Q ss_pred CChhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 037713 302 KDVVSWTSI---IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378 (610)
Q Consensus 302 ~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (610)
.|...-.+| .-.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++..... -++.|+.+.
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHH
Confidence 776544443 33466789999999999887653 334677788888999999999999999987755 467788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 379 TCLLDLLSRSGHLDEAENLIKA-MPFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+-|.+.|-+.|+-..|.+..-. ...-| +..+..=|...|....-.++++.+|+++--+.|+......+++..+.+.|+
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 9999999999999999886543 33333 455554466668888889999999999998999766556677778889999
Q ss_pred hhHHHHHHHHHhhC
Q 037713 457 WQHVSKVRKLMSVM 470 (610)
Q Consensus 457 ~~~a~~~~~~m~~~ 470 (610)
+..|..+++.+..+
T Consensus 676 yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=5.1e-11 Score=121.25 Aligned_cols=274 Identities=9% Similarity=0.052 Sum_probs=211.0
Q ss_pred cCCHHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH--HHHHHHhccccHHHHH
Q 037713 184 SGRKKDAMEIFEQAPVR--NL-FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS--SIVGACANFAVLELGK 258 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~ 258 (610)
.|+++.|++.....+.. ++ ..|-....+..+.|+++.|.+.|.++.+.. |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58899999888876543 22 333333455588999999999999998765 5554333 3366788899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h--------hHHHHHHHHHHhcCChHHHHHHH
Q 037713 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD---V--------VSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
..++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998886 5578889999999999999999999999988531 1 23444454444555666677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
+.+.+. .+.+......+..++...|+.++|...+++..+ .+|+.... ++.+....++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 766443 345777888899999999999999999988876 34555322 233334569999999999888 45565
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 407 -EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 407 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
...+..+...|...+++++|.+.|+++++..|++ ..+..|+.++.+.|+.++|.++++.-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4557778888999999999999999999999975 678899999999999999999988653
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.7e-09 Score=102.71 Aligned_cols=440 Identities=12% Similarity=0.073 Sum_probs=317.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC--CCc-chHHHHHHHHHcCCCchHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDH-VSWASILTAYNQANLPQKTISI 91 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~ 91 (610)
..+++..|+.++++.+... ..+..+|-..+.+=.++..+..|+.+|++... |-+ ..|-.-+..=-.-|+...|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4567888999999998766 45777888888999999999999999987542 211 2255444444556899999999
Q ss_pred HHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC--
Q 037713 92 FSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-- 169 (610)
Q Consensus 92 ~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 169 (610)
|+.... ..||...|.+.++.=.+-...+.|+.+++..+-. .|++..|--....=.++|....|..+|+...+.
T Consensus 164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 998887 7899999999999988999999999999988754 589999988888999999999999999877632
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHhh----CCCCC-hhhHHHHHHHHHhCCC---hHHHHH-----HHHHHHHcC
Q 037713 170 ----NSVSWTAMLSAYARSGRKKDAMEIFEQ----APVRN-LFLWTALVSGLVQSRN---EIDAFY-----SFIEMRREG 232 (610)
Q Consensus 170 ----~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~m~~~~ 232 (610)
+...+.+...-=.++..++.|.-+|.- ++... ...|.....---+-|+ .++++- -|+.+++.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 233445555544567778888877753 33332 2334444433334454 344432 234455554
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch--hHHHHHHH--------HHHhcCCHHHHHHHHHhcCC-
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--FISNAIVD--------MYAKCSDIIAAKDIFGRMRR- 301 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~--------~y~~~g~~~~A~~~~~~~~~- 301 (610)
|-|-.+|--.+..-...|+.+...++++.++..- +|-. ..|...|- .-....+.+.+.++|+...+
T Consensus 319 --p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 319 --PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3688888888888888999999999999998754 3321 12222211 11246788899999987764
Q ss_pred -C-ChhHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 037713 302 -K-DVVSWTS----IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375 (610)
Q Consensus 302 -~-~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (610)
| ...||.- ...--.++.+...|.+++...+ |..|-..+|...|..-.+.+.++....+++...+ --+-+.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c 471 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENC 471 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhh
Confidence 2 3334443 3344456788999999998776 6689999999999999999999999999999987 234456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
.+|.-....=...|+.+.|..+|+-.-..| ....|.+.|.--...|.++.|..+++++++..+.. ..+...+.--
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHh
Confidence 888888888888999999999998873233 35667777777778999999999999999887754 3565555433
Q ss_pred h-----hhc-----------chhHHHHHHHHHh
Q 037713 452 A-----SAA-----------MWQHVSKVRKLMS 468 (610)
Q Consensus 452 ~-----~~g-----------~~~~a~~~~~~m~ 468 (610)
. +.| ....|.++|+...
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 3 233 4556777776653
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.5e-10 Score=107.23 Aligned_cols=322 Identities=12% Similarity=0.042 Sum_probs=164.2
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHH--HHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA--SLV 112 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~--~ll 112 (610)
.-|++.+-..--.+-+.|..+.|+..|......-+..|.+-+....-..+. +........ ...|...+. .+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~----e~~~~l~~~--l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI----EILSILVVG--LPSDMHWMKKFFLK 234 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH----HHHHHHHhc--CcccchHHHHHHHH
Confidence 345444444444455667778888887766554344444433322111122 222222221 121222221 234
Q ss_pred HHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCC
Q 037713 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK------NSVSWTAMLSAYARSGR 186 (610)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~ 186 (610)
.++-...+.+++.+-.+.+...|++.+...-+....++-...++|.|+.+|+++... |..+|+..+-.--.+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 556666677888888888888888888777777777777888888888888888744 44555554433222111
Q ss_pred HH-HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 187 KK-DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 187 ~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+. -|..+++ +.+--+.|.-.+.+-|.-.++.++|...|++.++.+. .-...|+.+..-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 11 1222222 1111233444444555555666666666666655542 233344444444555555555555555555
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
+.+ +.|-..|-.|.++|.-.+-..-|+-.|++..+ .|...|.+|...|.+.++.++|++.|+.....|-. +...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHH
Confidence 443 33444455555555555555555555544431 24455555555555555555555555555443322 33444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
..|...+-+.++..+|.+.|+.-++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555444433
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.2e-11 Score=124.00 Aligned_cols=190 Identities=13% Similarity=0.074 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACS 350 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 350 (610)
+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .| +-..|-.+...|.
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhhee
Confidence 3334444444444444444444444321 2334444444444444455555555444321 11 1223333444555
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
+.++++.|.-.|+.+.+ +.| +.+...++...+-+.|+.|+|+++++++ ...| |+..-..-...+...+++++|+
T Consensus 501 Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred ccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 55555555555555543 223 3344444555555566666666666555 2222 2222222333344555666666
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+.++++.++-|++...|..++.+|-+.|+.+.|..-+..+.+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 666666666666666666666666666666666665555543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.6e-11 Score=123.03 Aligned_cols=243 Identities=13% Similarity=0.130 Sum_probs=181.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HH
Q 037713 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIA-AK 293 (610)
Q Consensus 217 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~-A~ 293 (610)
+..+|+..|......- . ........+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.. |.
T Consensus 334 ~~~~A~~~~~klp~h~-~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-Y-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhc-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4677888888744433 2 455777778888888888888888888887753 12356677766654433211111 22
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
.+.+ +.+..+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+....
T Consensus 412 ~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 412 DLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 2222 22346789999999999999999999999988874 45 678888888888888889999999887643
Q ss_pred CCHHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 373 PSLQHYTC---LLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 373 ~~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
.|+.+|++ |.-.|.|.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|++++++++-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 45556655 455688999999999999888 77774 55566667778888999999999999999999998888888
Q ss_pred HHHhhhhcchhHHHHHHHHHhh
Q 037713 448 SNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+.++...+++++|.+.++++++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH
Confidence 9999999999999999988875
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=9.3e-13 Score=127.97 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...+..++..+.+.++++++.++++......-.++++..|......+.+.|+.+.|...++.+++.. |.|..+.+.++.
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~ 188 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAW 188 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3344445555555555555555555544322111444455555555555555555555555555543 223445555555
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 358 (610)
.+...|+.+++.+++.... ..|...|..+..+|...|+.++|+.+|++..... +.|..+...+..++...|+.++|
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 5555555555444444433 2344555566666666666666666666655531 22455555555666666666666
Q ss_pred HHHHHHh
Q 037713 359 RKLFKSM 365 (610)
Q Consensus 359 ~~~~~~~ 365 (610)
.++...+
T Consensus 268 ~~~~~~~ 274 (280)
T PF13429_consen 268 LRLRRQA 274 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 6655544
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.5e-10 Score=110.51 Aligned_cols=444 Identities=13% Similarity=0.037 Sum_probs=300.7
Q ss_pred chhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHc--cCCCCCcchHHHHHHHH
Q 037713 2 QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--EMPQRDHVSWASILTAY 79 (610)
Q Consensus 2 ~~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~--~m~~~~~~~~~~li~~~ 79 (610)
+++.|..+++-+....+...|.-+-+.+...+ .|+...--+.++|.-.|..+.|..+.. .+.+.|..+.......+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 46677777777777777777777777776555 444455567788888888888888775 45577888888888999
Q ss_pred HcCCCchHHHHHHH----HhHHCC--------CCCCChhh----HHHHH-------HHHhccCCcHHHHHHHHHHHhcCC
Q 037713 80 NQANLPQKTISIFS----TMLALD--------KLQPDHFV----FASLV-------KACGSLGATRLGKQVHACFVLSPF 136 (610)
Q Consensus 80 ~~~g~~~~A~~~~~----~m~~~~--------~~~pd~~~----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~ 136 (610)
.+..++++|+.++. .+..-. .+.+|..- -+.-. +.+....+.++|+..+.+.+..
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-- 170 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-- 170 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--
Confidence 99999999998887 221100 01111111 00011 1223334556666666665543
Q ss_pred CCChhHHHHHHHHHHhC-CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------------CC----
Q 037713 137 CDDDVVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ-------------AP---- 198 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------~~---- 198 (610)
|+..+.++...-... -..++-+.+|+... ..... ..+.+.-..+|+- ++
T Consensus 171 --D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~---~a~~~--------~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 171 --DAKCFEAFEKLVSAHMLTAQEEFELLESLD---LAMLT--------KEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred --chhhHHHHHHHHHHHhcchhHHHHHHhccc---HHhhh--------hhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 333333222211110 01112222333221 11100 0011111111210 00
Q ss_pred ---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhH
Q 037713 199 ---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275 (610)
Q Consensus 199 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (610)
+.++...-.-..-+...+++.+.++++....+.. |+....+..=|.++...|+...-..+=..+++. .|....+
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~s 314 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALS 314 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcc
Confidence 1233444445556778899999999999998865 366666666677888888877766666666655 3667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
|-++.-.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHh
Confidence 9999999999999999999999876533 578999999999999999999999887653 111222233455568889
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCch
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--P------FEP-DEPTWAALLSACKHHRNT 423 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~------~~p-~~~~~~~ll~~~~~~g~~ 423 (610)
++.+.|.++|.+... -.+.|+...+-+.-+....+.+.+|..+|+.. + -++ -..+++.|..+|++.+.+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999998864 23446677788877778889999999998876 1 112 356788899999999999
Q ss_pred hHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++|+..+++.+.+.|.++.+|..++-+|...|+++.|...+.+..
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=1.3e-08 Score=101.80 Aligned_cols=419 Identities=11% Similarity=0.078 Sum_probs=333.4
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l 111 (610)
+.++.+|...+ .....++|+.++.+..+- +...|. +|++-.-++.|..+++..++. ++-+...|.+.
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHH
Confidence 44555555544 456677799988876542 333344 566677889999999999885 66688888877
Q ss_pred HHHHhccCCcHHHHHHHHH----HHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC------CChhhHHHHHHHH
Q 037713 112 VKACGSLGATRLGKQVHAC----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL------KNSVSWTAMLSAY 181 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~ 181 (610)
...=-..|+.+....+..+ +...|+..+..-|-.=...+-+.|..-.+..+...... .-..+|+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 7776788899888887765 44578888888888888888888998888888776652 2356899999999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH
Q 037713 182 ARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258 (610)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 258 (610)
.+.+.++-|+.+|....+ .+...|...+..--..|..++...+|++....-. -....|.....-.-..|++..|+
T Consensus 527 ~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHhcCCcHHHH
Confidence 999999999999987653 3567888888777888999999999999998753 35556666666777789999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037713 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336 (610)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 336 (610)
.++..+.+.. +.+..+|-+-+..-....+++.|+.+|.+... ++...|.--+..-.-.++.++|++++++-.+. -
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--f 681 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--F 681 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--C
Confidence 9999999886 34788899999999999999999999998874 67778877777777789999999999988875 5
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037713 337 PN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAAL 413 (610)
Q Consensus 337 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 413 (610)
|+ ...|..+...+-+.++++.|...|..-.+ .++..+..|-.|.+.=-+.|.+-+|..++++. .-.-+...|...
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 56 45677788899999999999999987765 45666789999999999999999999999998 333478899999
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCC------------------------------CcchHhHHHHhhhhcchhHHHHH
Q 037713 414 LSACKHHRNTEMGTRVANHLLSLKPED------------------------------PSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
+..-.+.|+.+.|..+..++++-.|++ +.....++.++....+++.|.+.
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887655544 33444566677777778888888
Q ss_pred HHHHhhC
Q 037713 464 RKLMSVM 470 (610)
Q Consensus 464 ~~~m~~~ 470 (610)
|.+..+.
T Consensus 840 f~Ravk~ 846 (913)
T KOG0495|consen 840 FERAVKK 846 (913)
T ss_pred HHHHHcc
Confidence 8776543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=2.6e-10 Score=116.80 Aligned_cols=278 Identities=11% Similarity=-0.019 Sum_probs=180.1
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhcCC--CCh--hhHHHHHHHHHhcCCHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNARAVFDSIKL--KNS--VSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~ 191 (610)
..|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.|.+..+ |+. ...-+....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3456666666665554432 22 22223334455556666666666655431 222 12223355556667777777
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH-HHHHHH---hccccHHHHHHHHHHH
Q 037713 192 EIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS-SIVGAC---ANFAVLELGKQIHGLV 264 (610)
Q Consensus 192 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~-~ll~~~---~~~~~~~~a~~~~~~~ 264 (610)
..++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++. ++..+. .-..+. ...+..+.+...+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77766543 25567778888888899999999999998888754 333221 111211 2222223333344444
Q ss_pred HHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037713 265 IALGY---ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVS---WTSIIVGTAQHGQAEETLALYDEMVSAGVK 336 (610)
Q Consensus 265 ~~~~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 336 (610)
.+... +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+++.+++..+. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 44322 24788889999999999999999999999875 43331 122222334457788899999887765 4
Q ss_pred CCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 337 PNE---VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 337 p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
|+. ....++...|.+.|++++|.++|+.... +...|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544 4456788899999999999999995433 356799999999999999999999999999874
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.5e-08 Score=97.69 Aligned_cols=388 Identities=13% Similarity=0.112 Sum_probs=209.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
++++..|.++|+..+..+ ..+...|..-+..=.+...+..|+.+++.++..= |.-...|--.+.+=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 344445555555554421 1222223333333344445555555555554431 1112223333333344455555555
Q ss_pred HHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC
Q 037713 162 VFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQA--PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE-GVDIV 236 (610)
Q Consensus 162 ~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p 236 (610)
+|++-. +|+...|++.|+.=.+...++.|..++++. ..|++.+|--...--.+.|...-|..+|....+. |-...
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 555433 445555555555555555555555555542 2445555555555555555555555555554432 10001
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---C
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC--LFISNAIVDMYAKCSDIIAAKDI--------FGRMRRK---D 303 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~--------~~~~~~~---~ 303 (610)
+...+.+...--.....++.|.-++..++..- +.+ ...|..+...--+.|+......+ ++.+... |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22333333333344556666666666666542 222 34444444444445553333222 2222222 4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHH---HhccCCHHHHHHHHHHhHHhcCCCC
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-------VTFVGLIYA---CSHVGLVGKGRKLFKSMIEDYGITP 373 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~~~~~~ 373 (610)
-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.+ -....+++.+.++++...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 556666666666677888888888877654 44421 122222122 2245677777777777765 3444
Q ss_pred CHHHHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 374 SLQHYTCLLDLLS----RSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 374 ~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
...|+.-+--+|+ ++.++..|.+++... |.-|-..+|...|..-.+.++++....++++.++.+|.+..++...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 4455555544443 667777787777666 77777777777777777777788888888888888887777777777
Q ss_pred HHhhhhcchhHHHHHHHHHhhCCCccCC
Q 037713 449 NVYASAAMWQHVSKVRKLMSVMEVKKEP 476 (610)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (610)
..-...|+++.|..+++...+.+....|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 7777778888888877777665543333
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=3.5e-09 Score=109.32 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=89.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-----FEPDEPTWAALLSACK 418 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~ 418 (610)
.++..|++.-+..++...-+.... +-+ ...|..||+.+......++|..+.++.. +.-|...+..+.+...
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 334444444444444444333322 122 2678999999999999999999998882 2345666788888889
Q ss_pred hcCchhHHHHHHHHHhcC---CCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCcc
Q 037713 419 HHRNTEMGTRVANHLLSL---KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (610)
+.+....+..+++++.+. .|.......-+.+..+..|..+...+.++.+...|+.-
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999999999999888752 23334455667777888899999999999998888865
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2.3e-10 Score=107.85 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=164.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
....+..+...|.+.|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 356677888899999999999999988753 3567888889999999999999999999887643 356677788889
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 426 (610)
+...|++++|.+.++...+..........+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998774222334567788888999999999999999887 4344 456788888889999999999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...+++..+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888899999999999999998887754
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4.4e-09 Score=96.68 Aligned_cols=264 Identities=16% Similarity=0.154 Sum_probs=152.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh------HHHHHHHHHHhCCC
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV------VKSSLVDMYAKCGL 155 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~~g~ 155 (610)
++++++|.++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|+.+|+.+.++ ||.. ..-.|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 467888888888887732 223344556667778888888888888888764 3321 22233333444444
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN---LFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 156 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+|.|+.+|..+.+.+ ......|+..|-+..+|++|+++-+++.+.+
T Consensus 123 -------------------------------~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 123 -------------------------------LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred -------------------------------hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 444444444443322 2344456777888888888888887777766
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHH
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTS 309 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~ 309 (610)
.+ +..+ -| ...|.-|...+....+++.|..++.+..+. .+..--.
T Consensus 172 ~q-~~~~----eI---------------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 172 GQ-TYRV----EI---------------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred Cc-cchh----HH---------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 43 2111 00 112334444455556677777777766542 3344444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 389 (610)
+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+. .+....-..|.+.-....
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQE 296 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhh
Confidence 55667777888888888887777644333455666777777777777777777776653 233333333333333333
Q ss_pred CHHHHHH-HHHhCCCCCCHHHHHHHHHH
Q 037713 390 HLDEAEN-LIKAMPFEPDEPTWAALLSA 416 (610)
Q Consensus 390 ~~~~A~~-~~~~m~~~p~~~~~~~ll~~ 416 (610)
-.+.|.. +.++..-+|+...+..|+..
T Consensus 297 G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 297 GIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred ChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3333333 33444556666666555554
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=6e-09 Score=98.78 Aligned_cols=274 Identities=14% Similarity=0.052 Sum_probs=185.7
Q ss_pred CCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 153 CGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 153 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
.|++..|++...+-.+. ....|..-+.+--+.|+.+.|-..+.+..++ +...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34555555554443321 2233333334444555555555555554332 2334444555566666666666666
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL-------FISNAIVDMYAKCSDIIAAKDIFGR 298 (610)
Q Consensus 226 ~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~ 298 (610)
.++.+.+. -++........+|.+.|++.....+...+.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 177 ~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666552 35555666666666666666666666666666654443 3566666665555566666667777
Q ss_pred cCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 037713 299 MRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375 (610)
Q Consensus 299 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (610)
.+. .++..-.+++.-+.+.|+.++|.++.++-.+.+..|+. ..+-.+.+.++.+.-.+..+...+.++..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 763 46777778888889999999999999998888777763 333467788888888888888877655555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
..+.+|...|.+.+.+.+|...|+.. +..|+..+|+-+..++.+.|+.++|.++.++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 67888999999999999999999877 788999999999999999999999999988876
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.9e-12 Score=86.01 Aligned_cols=50 Identities=36% Similarity=0.612 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037713 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351 (610)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 351 (610)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=1.7e-09 Score=111.53 Aligned_cols=342 Identities=13% Similarity=0.103 Sum_probs=186.2
Q ss_pred HHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC
Q 037713 90 SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169 (610)
Q Consensus 90 ~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 169 (610)
.++-.|...| +.|+.+||.+++.-|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 4556677777 8888888888888888888888888 8888887778888888888888888888877655 67
Q ss_pred ChhhHHHHHHHHHhcCCHHH---HHHHHhhCCC---C-------------------ChhhHHHHHHHHHhCCChHHHHHH
Q 037713 170 NSVSWTAMLSAYARSGRKKD---AMEIFEQAPV---R-------------------NLFLWTALVSGLVQSRNEIDAFYS 224 (610)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~---~-------------------~~~~~~~li~~~~~~g~~~~A~~~ 224 (610)
...+|+.|..+|...|++.. .++.+..+.. + ....-...+.-.+-.|.++.++++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888654 2221111110 0 001112233334444555555555
Q ss_pred HHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 037713 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-- 302 (610)
Q Consensus 225 ~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 302 (610)
+..+....-. .+.. .++.-+.... .-.+++........-.++..++.++++.-.-.|+.+.|..++.+|.++
T Consensus 162 l~~~Pvsa~~--~p~~--vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAWN--APFQ--VFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCccccc--chHH--HHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 5444322110 1111 1233332222 222233333222222467777777777777777777777777777653
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 303 --DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 303 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
+..-|..++-+ .+....+..+++-|.+.|+.|+..|+..-+-.+...|....+....+.- +|+ +...+..
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~---hg~--tAavrsa 307 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA---HGF--TAAVRSA 307 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh---hhh--hHHHHHH
Confidence 22223333333 5666666777777777777777777776666666644422222211110 010 1222333
Q ss_pred HHHHHHhcCCHHHHH-----HHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh----cCCCCCCcchHhHH
Q 037713 381 LLDLLSRSGHLDEAE-----NLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL----SLKPEDPSSYILLS 448 (610)
Q Consensus 381 li~~~~~~g~~~~A~-----~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~p~~~~~~~~l~ 448 (610)
+..+.....+++.-. ..+++- ++.-...+|. +..-...+|.-++.+++...+. ++.|++...|..+.
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 332211111221111 111111 2222223343 2233444788888888877765 34566666777666
Q ss_pred HHhhhhc
Q 037713 449 NVYASAA 455 (610)
Q Consensus 449 ~~~~~~g 455 (610)
.-|.+.-
T Consensus 387 rqyFrr~ 393 (1088)
T KOG4318|consen 387 RQYFRRI 393 (1088)
T ss_pred HHHHHHH
Confidence 6665443
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.1e-11 Score=84.61 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=45.4
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc
Q 037713 67 RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117 (610)
Q Consensus 67 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~ 117 (610)
||+++||++|.+|++.|++++|+++|++|.+.| ++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 788999999999999999999999999999998 99999999999998864
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.3e-09 Score=112.89 Aligned_cols=261 Identities=10% Similarity=-0.041 Sum_probs=187.6
Q ss_pred ChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh---------ccccHHHHHHHHHHHHH
Q 037713 201 NLFLWTALVSGLVQ-----SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA---------NFAVLELGKQIHGLVIA 266 (610)
Q Consensus 201 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 266 (610)
+...|...+.+-.. .+..++|++.|++..+... .+...+..+..++. ..+++++|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 1346799999999988762 34555555554443 23457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.... +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 75 45677888899999999999999999999764 3 4678888999999999999999999999886433 222333
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhc
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWA-ALLSACKHH 420 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~ 420 (610)
.++..+...|++++|...++++.+. .+| +...+..+...|...|++++|.+.++++ +..|+..... .+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444566789999999999998763 234 4556778888999999999999999988 5556654444 444456766
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
| +.|...++++++..-..+..+..+...|+-.|+-+.+... +.+.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6 4788888887754322223333477778888888777776 666544
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5.1e-08 Score=94.59 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=173.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 290 (610)
-+.-.|+...|.+-|+........ +...|.-+...|....+.++..+.|..+.+.. +.++.+|..-..++.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 355678999999999999987754 22237777888999999999999999998876 446667777788888889999
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 291 AAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 291 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+|..=|++...- ++..|-.+..+.-+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999988753 5566777777777889999999999999886 444577888889999999999999999999876
Q ss_pred hcCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 368 DYGITPS---------LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 368 ~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
+.|+ +.+.-.++..-. .+++..|.+++++. .+.|. ...+.+|...-.+.|+.++|+++|++...+
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333 222223333223 48999999999988 66664 567888888899999999999999988755
Q ss_pred C
Q 037713 437 K 437 (610)
Q Consensus 437 ~ 437 (610)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 3
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=9.5e-09 Score=104.39 Aligned_cols=231 Identities=14% Similarity=0.187 Sum_probs=170.4
Q ss_pred HhHHHHHHHHHhccccHHHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 037713 238 PLVLSSIVGACANFAVLELGKQIHGLVIAL-----G-YESCL-FISNAIVDMYAKCSDIIAAKDIFGRMRR-------K- 302 (610)
Q Consensus 238 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 302 (610)
..|...+...|...|+++.|...++..++. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566777888888888888888777665 2 12222 2334577788888998888888887753 1
Q ss_pred ---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 037713 303 ---DVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGV-KPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYG-- 370 (610)
Q Consensus 303 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 370 (610)
-..+++.|..+|...|++++|..++++..+ .|. .|.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677788889999999888888877543 122 2222 2356677789999999999999988776543
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhc-
Q 037713 371 ITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLS- 435 (610)
Q Consensus 371 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 435 (610)
..++ ..+|+.|...|...|++++|++++++. +..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 378999999999999999999999887 11222 45677888889999999999999987653
Q ss_pred ---CCCC---CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 436 ---LKPE---DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 436 ---~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+|+ ...+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 34578899999999999999999988764
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=2.8e-08 Score=94.28 Aligned_cols=273 Identities=11% Similarity=0.017 Sum_probs=156.4
Q ss_pred CCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHH
Q 037713 51 CDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127 (610)
Q Consensus 51 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~ 127 (610)
.|++..|+++..+-.+ ..+..|..-..+--+.|+.+.|-..+.+.-+.. -.++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3777777777765432 233344444455556677777777777776632 134444455555566677777777777
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN-----------SVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
...+.+.+ +.+..+.......|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...+++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777766 5566777777777777777777777777776432 23555555555555555554555555
Q ss_pred CCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 037713 197 APVR---NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273 (610)
Q Consensus 197 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (610)
.+.. ++..-.+++.-+.+.|+.++|.++..+..+.+-. |. ...+-.+.+.++.+.-.+..+...+.- +.++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5522 4555556666666777777777776666666533 32 222223344444444444444433321 2223
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
..+.+|...|.+.+.+.+|...|+... +++..+|+-+..+|.+.|+..+|.+.+++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 455555555555555555555555443 2455555555555555555555555555543
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.6e-07 Score=89.63 Aligned_cols=439 Identities=11% Similarity=0.094 Sum_probs=267.3
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHH----HHHHH
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASI----LTAYN 80 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----i~~~~ 80 (610)
+..+=|+-....+++++|.+....++..+ +.+......=+-+..+.+++++|+++.+.-..- .+++.. ...+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 34444566677788999999999998877 335555555555678889999999877654421 122222 33445
Q ss_pred cCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhCCChHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~ 158 (610)
+.+..++|+..+.- ..+ |..+...-...|.+.+++++|..+++.+.+++.+. |...-..++.+ +..-.
T Consensus 91 rlnk~Dealk~~~~------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQ 160 (652)
T ss_pred HcccHHHHHHHHhc------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhh
Confidence 78999999998882 333 33355555566889999999999999999887432 11122222211 11112
Q ss_pred HHHHHHhcCCCChhhHHHH---HHHHHhcCCHHHHHHHHhhC--------CCCC-----hh-----hHHHHHHHHHhCCC
Q 037713 159 ARAVFDSIKLKNSVSWTAM---LSAYARSGRKKDAMEIFEQA--------PVRN-----LF-----LWTALVSGLVQSRN 217 (610)
Q Consensus 159 A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~--------~~~~-----~~-----~~~~li~~~~~~g~ 217 (610)
+. +.+..+.....+|..+ ...+...|++.+|+++++.. ...| .. .---|...+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 4555554444444443 34567889999999999876 1111 11 12234456777899
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHH---HHhccccHHH--HHHHHH-----------HHHHhCCCCchhHHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVG---ACANFAVLEL--GKQIHG-----------LVIALGYESCLFISNAIVD 281 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~-----------~~~~~~~~~~~~~~~~li~ 281 (610)
.++|..+|....+... +|........+ +...-.++-. ....++ ......-......-+.++.
T Consensus 240 t~ea~~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 55533332221 2221111111 000110 0000000111222345555
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKD-VVSWTSIIVGTA--QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 358 (610)
+|. +..+.+.++-...+... ...+.+++.... +...+..|.+++...-+....-........+......|+++.|
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 554 55667777777776532 344555554432 2335778888887776653222344555666777889999999
Q ss_pred HHHHH--------HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC
Q 037713 359 RKLFK--------SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--------PFEPD-EPTWAALLSACKHHR 421 (610)
Q Consensus 359 ~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 421 (610)
.+++. .+.+ .+.. +.+...++.+|.+.++-+.|..++.+. .-.+. ..+|.-+..--.++|
T Consensus 396 ~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 4433 2333 455667888899988877777777665 11221 222333333345679
Q ss_pred chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
+.++|...++++.+.+|++......++-+|++.. .+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 9999999999999999999999999999998763 455655433
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=6.6e-07 Score=89.83 Aligned_cols=450 Identities=14% Similarity=0.169 Sum_probs=248.1
Q ss_pred ccCChHHHHHHHHHHHHh-CCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 93 (610)
..+++-.-+..+...+.. .+..+..+|...+......|-++-+.+++++-.+-++.+-+--|..++..+++++|-+.+.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344455555555544432 3333445566666666666666666666666555555555566666666666666666665
Q ss_pred HhHHCCC-----CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCC--CCC--hhHHHHHHHHHHhCCChHHHHHHHH
Q 037713 94 TMLALDK-----LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CDD--DVVKSSLVDMYAKCGLPNNARAVFD 164 (610)
Q Consensus 94 ~m~~~~~-----~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 164 (610)
..+.... -+.+...|.-+-...++..+.-....+= .+++.|+ -+| ...|++|.+-|.+.|.++.|..+|+
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5433210 1223333444444433333222222111 1222222 223 3578899999999999999999988
Q ss_pred hcCCC--ChhhHHHHHHHHHhc----------------C------CHHHHHHHHhhCCCC---------------ChhhH
Q 037713 165 SIKLK--NSVSWTAMLSAYARS----------------G------RKKDAMEIFEQAPVR---------------NLFLW 205 (610)
Q Consensus 165 ~m~~~--~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~---------------~~~~~ 205 (610)
+.... .+.-++.+.+.|++. | +++-...-|+.+..+ ++..|
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 76543 233333444444221 1 122222333332211 22333
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-CC-C--CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc---hhHHHH
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREG-VD-I--VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNA 278 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~-~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 278 (610)
..-+. ...|++.+-...|.+..+.= ++ . .-...|..+.+.|-..|+++.|+.+++...+..++.- ..+|..
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 33322 33566777777777776531 00 0 1234577777888888888888888888877655433 466777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR---------------------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-- 335 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-- 335 (610)
-.++-.+..+++.|+++...... ++...|...++.--..|-++....+|+++.+..+
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 77777788888888887766531 1233455555544445555555555555544332
Q ss_pred --------------------------------CCCH-HHHHHHHHHHh---ccCCHHHHHHHHHHhHHhcCCCCCH--HH
Q 037713 336 --------------------------------KPNE-VTFVGLIYACS---HVGLVGKGRKLFKSMIEDYGITPSL--QH 377 (610)
Q Consensus 336 --------------------------------~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~~~--~~ 377 (610)
.|+. ..|+..+.-+. ....++.|..+|++..+ |.+|.. ..
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKti 588 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 2332 12333222222 23467888888888877 666543 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc--chHhHHHHh
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM--PFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS--SYILLSNVY 451 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~ 451 (610)
|-.....=-+.|....|+.++++. ++++. ...|+..|.--...=-+..-..+|+++++.-|++-. ...-.+++-
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlE 668 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLE 668 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 333333334567778888888887 34443 345666665544433455667788888877775422 233456667
Q ss_pred hhhcchhHHHHHHHHHhh
Q 037713 452 ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~ 469 (610)
.+.|..+.|..++..-.+
T Consensus 669 tklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 669 TKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hhhhhHHHHHHHHHhhhh
Confidence 788999999998876544
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.9e-08 Score=91.42 Aligned_cols=246 Identities=12% Similarity=0.111 Sum_probs=185.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCH
Q 037713 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDI 289 (610)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~ 289 (610)
.-++++++|.++|-+|.+... -...+-.++.+.+.+.|..+.|..+|..+.++.--+. ....-.|..-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 345788999999999988552 3555667788889999999999999998887632111 23455677888999999
Q ss_pred HHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHH
Q 037713 290 IAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE----VTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 290 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
|.|+.+|..+.+.+ ..+...|+..|-...+|++|++.-+++...|-.+.. ..|.-|...+....+++.|..++
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998743 456677899999999999999999999887766553 34566667777788999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+..+. -+..+..--.+.+.+...|+++.|.+.++.. .-.|+ ..+...|..+|...|+.++++..+.++.+..+.
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 888763 2233444456778889999999999999888 44455 456778889999999999999999999988775
Q ss_pred CCcchHhHHHHhhhhcchhHHHHH
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
. ..-..+...-....-.+.|...
T Consensus 282 ~-~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 282 A-DAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred c-cHHHHHHHHHHHhhChHHHHHH
Confidence 3 4555555555444444455444
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.6e-08 Score=95.28 Aligned_cols=198 Identities=11% Similarity=0.039 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...+..+...+...|++++|.+.+++..+.. |.+...+..+...+...|+++.|...++...+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4567777778888888888888888777654 2345555556666666666666666666665543 223334444445
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
.|...|++++|.+.|++ .......| ....+..+..++...|++++|..
T Consensus 108 ~~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555544 44321111 12233334444455555555555
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
.+.+..+. .+.+...+..+...+...|++++|.+.+++. ... ++...+..+...+...|+.+.|..+.+.+.+
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55554432 1222344445555555555555555555544 111 2233333444445555555555555544443
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-07 Score=93.96 Aligned_cols=271 Identities=11% Similarity=0.013 Sum_probs=150.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVS 210 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 210 (610)
..+..+.-.-.+-+...+++.+..++++.+.+. ....+..-|.++.+.|+..+-..+=.++.+ ....+|-++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344444444555555555555555555555433 223333444445555443333332222221 13455555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcC
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG---YESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~y~~~g 287 (610)
-|.-.|+..+|.+.|.+...... .=...|......++..+.-++|...+..+.+.- ..|.. | +.--|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhc
Confidence 55555666666666655443321 233445555555555555666655555554431 11221 1 233455666
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CC-CCHHHHHHHHHHHhccCCHHHH
Q 037713 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSA----G-VK-PNEVTFVGLIYACSHVGLVGKG 358 (610)
Q Consensus 288 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~t~~~ll~a~~~~g~~~~a 358 (610)
+++-|.++|.+... .|+...+-+.-..-..+.+.+|..+|+..... + -+ --..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 77777777766542 35666666666556667777777777765521 0 01 1344567777777777777777
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037713 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLS 415 (610)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 415 (610)
+..++.... -.+.+..+|.++.-.|...|+++.|.+.|.+. .++|+..+-..+++
T Consensus 475 I~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 777777765 34556677777777777777777777777766 66777666655555
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.14 E-value=2.9e-06 Score=85.57 Aligned_cols=440 Identities=11% Similarity=0.041 Sum_probs=270.9
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHH
Q 037713 12 VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKT 88 (610)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 88 (610)
-|-..+....+......+++ +.+.++.+....-=.+...|+.++|......-.+ .+.++|..+.-.+-...++++|
T Consensus 16 k~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 34556677777887777777 4444444444333334567899999988876654 4678899998888888999999
Q ss_pred HHHHHHhHHCCCCCCChh-hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 037713 89 ISIFSTMLALDKLQPDHF-VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167 (610)
Q Consensus 89 ~~~~~~m~~~~~~~pd~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 167 (610)
+..|..... +.||.. .+.-+--.-++.++++.....-.++.+.. +.....|..+..++.-.|+...|..+++...
T Consensus 95 iKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 95 IKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 456554 34333333356778887777777777654 4556678888888999999999999988765
Q ss_pred C-----CChhhHHHH------HHHHHhcCCHHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037713 168 L-----KNSVSWTAM------LSAYARSGRKKDAMEIFEQAPVR--NL-FLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233 (610)
Q Consensus 168 ~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 233 (610)
+ ++...+... .....+.|..++|.+-+...... |- ..-.+-...+.+.++.++|..++..+....
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 2 344443332 23457788899998888765433 22 233345667889999999999999999876
Q ss_pred CCCCHhHHHHHHHHHh-cc-ccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCCC-ChhH
Q 037713 234 DIVDPLVLSSIVGACA-NF-AVLELGKQIHGLVIALGY---ESCLFISNAIVDMYAKCSDIIA-AKDIFGRMRRK-DVVS 306 (610)
Q Consensus 234 ~~p~~~t~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~~-~~~~ 306 (610)
||..-|...+..+. +. +..+....++....+.-. .|-....+ ++ ...++.+ ...++..+.++ -+.+
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl----~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VL----NGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-Hh----CcchhHHHHHHHHHHHhhcCCCch
Confidence 77777666655554 22 333333355554443311 11100000 00 1111222 22222222222 1233
Q ss_pred HHHHHHHHHhcCChHHHHHHH----HHHHHcC----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037713 307 WTSIIVGTAQHGQAEETLALY----DEMVSAG----------VKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~----~~m~~~g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 370 (610)
+..+.+-|-.-...+-..++. ..+...| -+|.. .|+..+...+-+.|+++.|..+++..+.
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--- 399 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--- 399 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---
Confidence 344443333222221111111 1111111 13443 3445667788899999999999998865
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc-----
Q 037713 371 ITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-P-FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS----- 442 (610)
Q Consensus 371 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----- 442 (610)
..|+ ++.|..=.+.+...|.+++|..++++. . ..||...-.--.....+..+.++|.++..+...-+-+-..
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~m 479 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEM 479 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHh
Confidence 3555 467777778889999999999999888 2 2345444334445566788999999988877654421100
Q ss_pred --ch--HhHHHHhhhhcchhHHHHHHHHH
Q 037713 443 --SY--ILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 443 --~~--~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.| ..=+.+|.++|+|.+|.+-+..+
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 11 12356788888888887755444
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=2.6e-08 Score=101.24 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=171.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCCHhHHH-HHHHHHhccccHHHHHHHHHHHHHh-----CC--C
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRRE-----GVDIVDPLVLS-SIVGACANFAVLELGKQIHGLVIAL-----GY--E 270 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 270 (610)
+..-+...|...|+++.|..+++...+. |...|...+.. .+...|...+.+++|..+|+.+... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344777888888888888888877654 32224444433 3667788888888888888888664 21 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCC
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR----------KDV-VSWTSIIVGTAQHGQAEETLALYDEMVS---AGVK 336 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~ 336 (610)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..++++..+ .-+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245667777889999999888877776542 222 3466777888899999999999987654 1133
Q ss_pred CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 037713 337 PN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY----G-ITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM----- 401 (610)
Q Consensus 337 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 401 (610)
++ ..+++.|...|.+.|++++|.++|++++... + ..+. ...++-|...|.+.++.++|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3578999999999999999999999987753 1 1222 467788899999999999999998876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 402 ---PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 402 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
+..|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23444 5678999999999999999999999887
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.9e-07 Score=86.08 Aligned_cols=387 Identities=11% Similarity=0.006 Sum_probs=235.6
Q ss_pred HHHHHHhhcCCChHHHHHHHccCCCCC-cchHHHHHHHHHcCC-CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC
Q 037713 42 NTLIDAYGKCDLVQYAHHLLEEMPQRD-HVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119 (610)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 119 (610)
...+..|...++-+.|.....+.+..- ..--|.|+.-+-+.| +-.++.--+......- | ... ..|.+..+.+
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p--~aL-~~i~~ll~l~ 174 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC---P--MAL-QVIEALLELG 174 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc---c--hHH-HHHHHHHHHh
Confidence 456677777788888888888877543 333344443333332 2222222222222211 1 011 1111111110
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhC--CChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHH
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC--GLPNNARAVFDSIK-----LKNSVSWTAMLSAYARSGRKKDAME 192 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~ 192 (610)
+..+...-..|-+..++|...+...-+.+|+.+ ++-..|...+-... ..|+.....+...+...|+.++|+.
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 111112222233333444444444445554443 34334444332222 2367777788888888888888888
Q ss_pred HHhhCCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC
Q 037713 193 IFEQAPVRNLFLWTAL---VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269 (610)
Q Consensus 193 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 269 (610)
.|++...-|+.+...| .-.+.+.|++++...+...+....- -....|..-+...-..++++.|..+-+..++..
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 8887665544433332 2345667777777777776655321 122223333333345566777777766666543
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--R-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
+.++..+-.-...+...|+.++|.-.|.... . -+..+|..|+..|...|++.+|.-+-+...+. +..+..+...+.
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g 409 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG 409 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc
Confidence 2233333333456667888999988888765 3 37889999999999999999998887776553 334555655442
Q ss_pred -HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCc
Q 037713 347 -YACS-HVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRN 422 (610)
Q Consensus 347 -~a~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~ 422 (610)
..|. ....-++|..++++.. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|...+...+.
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence 3333 2233577888888764 35665 466777888899999999999999887 778999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCCc
Q 037713 423 TEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~ 442 (610)
+++|...|..++.++|++..
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhcCccchH
Confidence 99999999999999998743
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=1.8e-08 Score=107.34 Aligned_cols=257 Identities=14% Similarity=0.027 Sum_probs=182.9
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHH---------hCCChHHHHHHHHHHHHcC
Q 037713 170 NSVSWTAMLSAYAR-----SGRKKDAMEIFEQAPVR---NLFLWTALVSGLV---------QSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 170 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~ 232 (610)
+...|...+.+-.. .+.+++|...|++..+. +...|..+..+|. ..+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 45556566665322 23467999999987654 3456666655544 2345889999999999876
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHH
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-VVSWTS 309 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 309 (610)
|.+...+..+...+...|++++|...++++.+.+ +.+...+..+...|...|++++|...|++..+ |+ ...+..
T Consensus 335 --P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 335 --HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 3577888888888899999999999999999986 45667888899999999999999999999875 43 223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
++..+...|++++|+..+++..... .| +...+..+..++...|+.++|...+..+... .+.+....+.+...|.+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 4555777899999999999987653 34 3445667778888999999999999887552 222344556666677777
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 389 GHLDEAENLIKAM----PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 389 g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
| ++|...++.+ ...|...-+.. ..+.-+|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4777766665 33344334433 335566776766666 7766554
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=3.9e-07 Score=93.46 Aligned_cols=439 Identities=14% Similarity=0.083 Sum_probs=251.4
Q ss_pred ccCChHHHHHHHHHHH----HhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchH
Q 037713 15 RHQIALTVKTLHAQII----KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQK 87 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 87 (610)
....++++....-.+. ...+.-|+.+|..|.=+..++|+++.+.+.|++... .....|+.+-..|...|.-..
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~ 375 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSK 375 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchH
Confidence 3444555544333322 223456888999999999999999999999988653 245569999999999999999
Q ss_pred HHHHHHHhHHCCCCCC-ChhhHHHHHHHHh-ccCCcHHHHHHHHHHHhc--CC--CCChhHHHHHHHHHHhCC-------
Q 037713 88 TISIFSTMLALDKLQP-DHFVFASLVKACG-SLGATRLGKQVHACFVLS--PF--CDDDVVKSSLVDMYAKCG------- 154 (610)
Q Consensus 88 A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g------- 154 (610)
|+.+++.-.... ..| |...+-..-+.|. +.+..+++...-.+++.. +. ......+-.+.-+|...-
T Consensus 376 Av~ll~~~~~~~-~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 376 AVNLLRESLKKS-EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHhhcccc-cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 999998776533 224 4444544445564 556777777776666652 11 112233444444443221
Q ss_pred ----ChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChHHHHH
Q 037713 155 ----LPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAP----VRNLFLWTALVSGLVQSRNEIDAFY 223 (610)
Q Consensus 155 ----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 223 (610)
...++.+.+++..+. |....--+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 122334444444322 22222222233445555555555544422 2245566666666666666666666
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 037713 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--- 300 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--- 300 (610)
+.+.....-. .|......-+..-...++.+++......+... |...- .....|+-....+.+..+.
T Consensus 535 vvd~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 535 VVDAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCc
Confidence 6555443210 12222222222222233443333333222211 00000 0001111222233333322
Q ss_pred -C-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 301 -R-KDV-VSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PN------EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 301 -~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
+ .|. .++.-+ .+... -+...+..-.. |...-+. |+ ...|......+.+.+..++|...+.+..+
T Consensus 604 ~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-- 678 (799)
T KOG4162|consen 604 SQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-- 678 (799)
T ss_pred ccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Confidence 0 122 222222 12211 11111110000 2221122 22 12344566778889999999988888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHH--HHHHHhcCCCCCCcchH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTR--VANHLLSLKPEDPSSYI 445 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~ 445 (610)
-.+.....|......+...|.+++|.+.|... .+.|+ +....++...+...|+...|.. ++..+++++|.++.+|.
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 23445577777778889999999999988877 67776 5677888888999999888888 99999999999999999
Q ss_pred hHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 446 LLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 446 ~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.|+.++.+.|+.++|.+.|....+.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5.9e-09 Score=95.80 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=167.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
+.|..+|.+.|.+.+|.+.|+.-.... |-+.||..+-++|.+..+.+.|..++.+-++. ++.|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 567788999999999999888877764 77778888888888888888888888877664 34455555666667777
Q ss_pred cCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 286 CSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.++.++|.++++...+. ++.+..++..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-.+.+|-+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77888888888777642 5556666667777778888888888888887766 6677777777777777777666666
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
+..... .-+.++| ..+|..|.......|++..|.+.|+-.+..+|++..
T Consensus 382 ~RAlst-------------------at~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-------------------ATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-------------------ccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 555431 1111111 334555555566678888888888888888888888
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+++.|+-+-.+.|+.++|..++....+.
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888888888888888888888777653
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.7e-08 Score=95.95 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 037713 252 AVLELGKQIHGLVIALG-YES--CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 252 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555432 122 235577777788888888888888887763 356788888888888999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 037713 326 LYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--P 402 (610)
Q Consensus 326 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 402 (610)
.|++..+. .| +..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888875 34 3567777888888889999999888888763 343322222223344567888888888654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-------cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLL-------SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
..|+...| .......|+...+ ..++.+. ++.|..+.+|..++.+|...|++++|...++...+.+
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332222 1222334554443 2333333 3345556788889999999999999999888876544
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.4e-06 Score=79.78 Aligned_cols=408 Identities=11% Similarity=0.032 Sum_probs=239.2
Q ss_pred HhhcCCChHHHHHHHccCCCC---Cc-chHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcH
Q 037713 47 AYGKCDLVQYAHHLLEEMPQR---DH-VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122 (610)
Q Consensus 47 ~~~~~g~~~~A~~~f~~m~~~---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~ 122 (610)
-+....++..|+.+++--..- .. .+--.+...+.+-|++++|+..+..+.+.. .|+...+..|.-...-.|...
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHH
Confidence 344456777777777643311 11 112234456678899999999998877754 555555555554445567788
Q ss_pred HHHHHHHHHHhcCCCCChhHH-HHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 037713 123 LGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201 (610)
Q Consensus 123 ~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 201 (610)
+|+++-... |+.... ..|.+.-.+.++-++-..+-..+.... .---+|.+..-..-.+.+|+.++.++...+
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887776543 333333 345566667777766666555554321 222233333333445788888888876443
Q ss_pred --hhhHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc--c--ccH--HHHHH----------HHH
Q 037713 202 --LFLWTAL-VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN--F--AVL--ELGKQ----------IHG 262 (610)
Q Consensus 202 --~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~--~--~~~--~~a~~----------~~~ 262 (610)
-...|.- .-+|.+..-++-+.+++.--.+.- ||+. +..=+.+|.. . |.. ++-.. ..+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 3444443 346677777777777777766543 4432 2222223321 1 111 01011 112
Q ss_pred HHHHhCC------C------Cc-----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC------
Q 037713 263 LVIALGY------E------SC-----LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ------ 319 (610)
Q Consensus 263 ~~~~~~~------~------~~-----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------ 319 (610)
.+.++++ + |. +..--.|+-.|.+.+++++|..+.+.+...++.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 2222211 0 10 11223455668899999999999998876555545443444444443
Q ss_pred -hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 320 -AEETLALYDEMVSAGVKPNEV-TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 320 -~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
..-|.+.|+-.-+++..-|.. --.++.+++.-..++++.+-+++.+.. |-...|...| .+..+++..|.+.+|+++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 344555555544444333321 123445555556778999999988866 4444454444 478899999999999999
Q ss_pred HHhC-CCC-CCHHHHHHHHHH-HHhcCchhHHHHHHHHHhcCC-CCCC-cchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 398 IKAM-PFE-PDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLK-PEDP-SSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 398 ~~~m-~~~-p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|-++ +.+ .|..+|.+++.- |.+.+.++.|..++- +.+ |.+. .....+++-|.+++.+--|.+.|+.+.....
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9887 222 467777776655 678889998877654 333 3222 2334667889999999999999998875433
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=3.5e-07 Score=89.20 Aligned_cols=217 Identities=10% Similarity=-0.017 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHcCC-CCCC-HhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGV-DIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
+..+.++.-+.++..... .|++ ...|......+...|+.+.|...+..+.+.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666664321 1111 3445566666777777888877777777764 345778888888899999999999
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037713 294 DIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 294 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 370 (610)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 98888864 3 4678888888888999999999999998875 44433222222234456789999999977654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 371 ITPSLQHYTCLLDLLSRSGHLDEA--ENLIKAM-PF----EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..|+...+ .++.. ..|+..++ .+.+.+. .. .| ....|..+...+...|++++|...|+++++.+|.+
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33433222 23333 34544333 3222221 11 12 24578889999999999999999999999999754
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=2.6e-05 Score=78.79 Aligned_cols=398 Identities=13% Similarity=0.129 Sum_probs=212.4
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 037713 55 QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134 (610)
Q Consensus 55 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 134 (610)
+.++..+.+|| ..|-.-+..+..+|+.......|...+..=++.-....|...++.....+-++.+..++..-++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44444455554 45777777778888888888888877664324445567888888877888888888888888764
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC----------ChhhHHHHHHHHHhcCCHH---HHHHHHhhCCCC-
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK----------NSVSWTAMLSAYARSGRKK---DAMEIFEQAPVR- 200 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~- 200 (610)
. | ..-+-.+..+++.+++++|.+.+...... +-..|..+-+..++.-+.- ....+++.+..+
T Consensus 168 ~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 A--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred C--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 3 2 33666778888888888888888777633 3345666555555443322 223445555433
Q ss_pred -C--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHH--------------------
Q 037713 201 -N--LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------------------- 257 (610)
Q Consensus 201 -~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a-------------------- 257 (610)
| ...|++|..-|.+.|.+++|.++|++..+.- ....-|..+.++|+.-.....+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 2 3578888888999999999988888876653 3344455555555442221111
Q ss_pred --HHHHHHHHHhC-----------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHH
Q 037713 258 --KQIHGLVIALG-----------YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---K------DVVSWTSIIVGTA 315 (610)
Q Consensus 258 --~~~~~~~~~~~-----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~ 315 (610)
..-++.+...+ -+.++..|..-+..| .|+..+-..+|.+..+ | -...|..+..-|-
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 11122221111 011122222222111 2333333444433321 1 2234666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC----------C-------CH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPN---EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT----------P-------SL 375 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----------~-------~~ 375 (610)
.+|+.+.|..+|++..+...+-- ..+|..-...=.+..+++.|.++.+....- .-. | +.
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhH
Confidence 66666666666666654322211 122333333333445566666665554321 000 0 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC---CC-CCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHH
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM---PF-EPDEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLS 448 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m---~~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 448 (610)
..|.-.++..-..|-++....+++++ .+ .|... .|..+ +-.+.-++++.+++++-+.+.|- -...++...
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 34555555555666666666666665 11 12211 12111 33455566666666666665532 111222222
Q ss_pred HHh---hhhcchhHHHHHHHHHhh
Q 037713 449 NVY---ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 449 ~~~---~~~g~~~~a~~~~~~m~~ 469 (610)
.-+ ...-+.+.|..+|+...+
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh
Confidence 211 122356666666666655
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.94 E-value=4e-06 Score=86.59 Aligned_cols=254 Identities=13% Similarity=0.099 Sum_probs=150.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
+.-+...|-..|++++|++++++..+.. |..+..|..-...+-+.|++.+|....+.+.+.. ..|..+-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 3455666778888888888888888765 2446778888888888888888888888888775 346777777888888
Q ss_pred hcCCHHHHHHHHHhcCCCCh----------hHH--HHHHHHHHhcCChHHHHHHHHHHHHc--CC---CCC---------
Q 037713 285 KCSDIIAAKDIFGRMRRKDV----------VSW--TSIIVGTAQHGQAEETLALYDEMVSA--GV---KPN--------- 338 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p~--------- 338 (610)
++|++++|.+++....+++. ..| .....+|.+.|++..|++.|....+. .+ .-|
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 89999999888887766541 123 33466788888888888776655431 01 122
Q ss_pred -HHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCC-----------CHHHHHHHHHHH---HhcCCHHHHHH
Q 037713 339 -EVTFVGLIYACSHVGL-------VGKGRKLFKSMIEDYGITP-----------SLQHYTCLLDLL---SRSGHLDEAEN 396 (610)
Q Consensus 339 -~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~---~~~g~~~~A~~ 396 (610)
..+|..+++..-+... ...|.+++-.+........ +..--..+-.-. .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2333334333222211 1233444444332100000 000000000000 01111111111
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 397 LIK-----------AM----P--FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 397 ~~~-----------~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.-. .. + ..||+.- ..|+ ....=.++|.++++-+.+..|++..+|..--.+|.+.|++-.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 100 00 1 1122211 1122 223357889999999999999999999999999999999988
Q ss_pred HHHHHH
Q 037713 460 VSKVRK 465 (610)
Q Consensus 460 a~~~~~ 465 (610)
|.+.+.
T Consensus 510 aLqaL~ 515 (517)
T PF12569_consen 510 ALQALK 515 (517)
T ss_pred HHHHHH
Confidence 887654
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=4.5e-08 Score=90.11 Aligned_cols=192 Identities=11% Similarity=0.092 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcc
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV-GLIYACSHV 352 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~ 352 (610)
-+.+..+|.+.|-+.+|.+.|+.-.+ |-+.||-.|-.+|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 35688899999999999999998763 67889999999999999999999999998875 67777765 466778888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRV 429 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (610)
++.++|.++++...+. -+.+++...++...|.-.++.+-|+.+++++ ++ -++..|+.+.-.|.-.++++.++.-
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999873 4557788889999999999999999999876 54 3778899999999999999999999
Q ss_pred HHHHhcCC--CC-CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 430 ANHLLSLK--PE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 430 ~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|++++..- |. -...|..|+.+....|++..|.+.|+.....+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99998543 32 346788999999999999999999988765443
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.4e-05 Score=84.31 Aligned_cols=427 Identities=12% Similarity=0.110 Sum_probs=246.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHH-HHH---HHccC------CCCC-----------
Q 037713 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY-AHH---LLEEM------PQRD----------- 68 (610)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~---~f~~m------~~~~----------- 68 (610)
..-+-+.+++......++..+..|.. |+.++|+|...|....+-.+ -++ .++.. .++|
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 44455677888888888888888864 88899999988877654322 111 00000 0111
Q ss_pred --------cc----hHHHHHHHHHcCCCchHH-----------HHHHHHhHHCCCC--CCChhhHHHHHHHHhccCCcHH
Q 037713 69 --------HV----SWASILTAYNQANLPQKT-----------ISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRL 123 (610)
Q Consensus 69 --------~~----~~~~li~~~~~~g~~~~A-----------~~~~~~m~~~~~~--~pd~~~~~~ll~~~~~~~~~~~ 123 (610)
+- .|-...+-+.+..+++-= ..+.++....+ + ..|+...+..++++...+-+.+
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~ta-l~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTA-LPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhc-CCccCChHHHHHHHHHHHhcCCcHH
Confidence 00 122222233333332211 13334444332 2 2356666777788888888888
Q ss_pred HHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 037713 124 GKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP--- 198 (610)
Q Consensus 124 a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 198 (610)
-.++++.++-.. +..+....|.|+-.-.|. +..+..+..+++..-|..- +.......+-+++|..+|++..
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~---ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPD---IAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchh---HHHHHhhhhHHHHHHHHHHHhcccH
Confidence 888888776422 223334455555444443 2334444444443221110 1111122233333433333211
Q ss_pred ----------------------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHH
Q 037713 199 ----------------------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256 (610)
Q Consensus 199 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 256 (610)
-.....|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.++.
T Consensus 1079 ~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1079 SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHH
Confidence 013357889999999999999998877543 788889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------CChhHHHHHHHH
Q 037713 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----------------------KDVVSWTSIIVG 313 (610)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~ 313 (610)
-..++..+.+..-+|.+ -+.||-+|++.+++.+-++++..-.. .++.-|..|...
T Consensus 1152 Lv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1152 LVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLAST 1229 (1666)
T ss_pred HHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHH
Confidence 99988888887666654 46788899999988887666532110 134456666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+...|++..|...-++. -+..||.-+-.+|...+.+..|. |.. .++.....-..-|+.-|-..|.+++
T Consensus 1230 LV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHH
Confidence 66666666666554443 25567777777777666554432 221 1233344556678888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
-..+++.. |++. .-..|.-|.-.|++-+ +++-.+.++-.... ...--+++++.++..|.|..-++....+
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88888766 5443 2334444444455443 45554444433321 1122466777777778777766665543
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.7e-05 Score=74.58 Aligned_cols=286 Identities=11% Similarity=-0.013 Sum_probs=197.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH-HHHHHH
Q 037713 175 TAMLSAYAR--SGRKKDAMEIFEQAP-----VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-LSSIVG 246 (610)
Q Consensus 175 ~~li~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~ 246 (610)
...+.++++ .++-..|...|-... ..|+.....+...+...|+.++|+..|++.+..+ |+..+ ...-.-
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~ 274 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHH
Confidence 344555543 344445554443322 3478888899999999999999999999987654 33322 222222
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHH
Q 037713 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEET 323 (610)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 323 (610)
...+.|+.+....+...+.... ..+..-|-.-.......++++.|+.+-++..+- ++..+-.-...+.+.|+.++|
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 3356677777666666554432 112222222233444567888888888877653 455555555678889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHhC
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL-DLLS-RSGHLDEAENLIKAM 401 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m 401 (610)
.-.|+..+... +-+...|..|+.+|...|.+.+|.-.-+...+. ++.+..+.+.+. ..+. ..---++|..++++.
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999987752 236789999999999999999998887776663 344455554442 2222 223357788888887
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 402 -PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 402 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.++|+ ....+.+..-|...|..+.+..++++.+...|++ ...+.|++.+...+.+.+|...+....
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77887 4456667777999999999999999999988865 788999999999999999988877664
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=1.4e-07 Score=83.11 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
+...+.-+|.+.|+...|..-+++.++.... +..++..+...|.+.|..+.|.+.|+...+. -+-+-.+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 3455677888888888888888888876322 4667888888888888888888888888762 233456777788888
Q ss_pred HhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 386 SRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
+..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.+...+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88899999999998872233 25678788777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 037713 462 KVRKLMSVMEV 472 (610)
Q Consensus 462 ~~~~~m~~~~~ 472 (610)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99988876554
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=8.5e-07 Score=90.04 Aligned_cols=191 Identities=14% Similarity=0.190 Sum_probs=90.1
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 037713 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
......+.+|..+++.+...... ..-|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|++++|.++-
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 33444555555555544443211 1234445555555666666665555432 2334455555666666655554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 407 (610)
.+.. |.......|..-..-.-..|++.+|.+++-.+ | .|+. -|.+|-+.|..++..++.++-.-..-.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 3322 22223333444444444555555555554332 1 2332 345555666666655555554111112
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
.|...+..-+-..|+.+.|+..|-++ .-+..-.++|-.++.|++|.++-+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 33334444455555655555554332 223444555555666666555433
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=5.8e-06 Score=75.57 Aligned_cols=305 Identities=11% Similarity=0.078 Sum_probs=148.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH-HHHHh
Q 037713 41 PNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL-VKACG 116 (610)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l-l~~~~ 116 (610)
+++.+..+.+-.++++|.+++..-.++ +....+.|..+|....++..|-+.++++-. ..|...-|..- ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHH
Confidence 344444455556666666666544332 334455555666666666666666666655 34544443321 12333
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHH--H--HHHhCCChHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLV--D--MYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~--~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~ 191 (610)
+.+.+..|..+...|... + ...+..+ . .....+++..++.+++..+ +.+..+.+.......+.|+.+.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 445555566655554321 1 1111111 1 1123455555555555555 234444444444444555555555
Q ss_pred HHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH-HHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 192 EIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-LSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 192 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
+-|+...+- ....||..+ +..+.|++..|++...+..+.|++ ..+.. ......+- ....+.--..++...+
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r-~HPElgIGm~tegi-DvrsvgNt~~lh~Sal- 240 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR-QHPELGIGMTTEGI-DVRSVGNTLVLHQSAL- 240 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh-cCCccCccceeccC-chhcccchHHHHHHHH-
Confidence 555543321 223343332 223445555555555555555543 11100 00000000 0000000000000000
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
+..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+... -...|
T Consensus 241 ------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 241 ------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred ------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHH
Confidence 112222233456789999999999999853 677765543322 24555555555555555533 34678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
|..++-.||+..-++.|-.++.+-
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhC
Confidence 999999999999888888887543
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.5e-05 Score=79.77 Aligned_cols=408 Identities=11% Similarity=-0.004 Sum_probs=242.6
Q ss_pred HHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh--cc
Q 037713 44 LIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG--SL 118 (610)
Q Consensus 44 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~--~~ 118 (610)
=++.+.+.|++++|.+...++.. .|...+..=+-++.+.+++++|+.+.+.-.. ..-+.+-+ +=++|+ +.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhh--HHHHHHHHHc
Confidence 35677888999999998887763 3566677777889999999999965543221 11111111 345554 78
Q ss_pred CCcHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHH-hcCCHHHHHHHHhh
Q 037713 119 GATRLGKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-RSGRKKDAMEIFEQ 196 (610)
Q Consensus 119 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~ 196 (610)
+..++|...+. |..++ ..+...-...+.+.|++++|..+|+.+...+...+...+.+-+ ..+-.-.+. +.+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~ 166 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQS 166 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHh
Confidence 89999998887 33443 3366666678889999999999999997665544444333211 111111221 3444
Q ss_pred CCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHcCCC-----CCC-H-------hHHHHHHHHHhccccHHHHHHH
Q 037713 197 APVRNLFLWTAL---VSGLVQSRNEIDAFYSFIEMRREGVD-----IVD-P-------LVLSSIVGACANFAVLELGKQI 260 (610)
Q Consensus 197 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~-----~p~-~-------~t~~~ll~~~~~~~~~~~a~~~ 260 (610)
.+.....+|..+ ...++..|++.+|+++++...+.+.+ ..+ . ..-..+.-++...|+-++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444434444443 45678899999999999998332210 011 0 1122344456778999999999
Q ss_pred HHHHHHhCCCCc---hhHHHHHHHHHHhcCCHH-HHHHHHHhcCCCChhHH---------------HHHHHHHHhcCChH
Q 037713 261 HGLVIALGYESC---LFISNAIVDMYAKCSDII-AAKDIFGRMRRKDVVSW---------------TSIIVGTAQHGQAE 321 (610)
Q Consensus 261 ~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~~~---------------~~li~~~~~~g~~~ 321 (610)
+..+++...... ....|.|+.+=....-++ .++..|+.........| +.++..| .+..+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 999998864332 223344443221111111 23333433332222111 2222222 23334
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSH--VGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 322 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
.+.++-.... +..|. ..+.+++..+.+ ...+..+..++....+ +.+-+ ..+--.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444433322 22333 344455544432 2246778888777765 33333 456677788889999999999998
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcC----CCC---CCcchHhHHHHhhhhcchhHHHH
Q 037713 399 K--------AM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL----KPE---DPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 399 ~--------~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
. .. .+.-.+.+...+..-+.+.++.+.|..++..++.- .+. -...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 44 23334555666777788888888888888877631 121 12233445555567799999999
Q ss_pred HHHHHhh
Q 037713 463 VRKLMSV 469 (610)
Q Consensus 463 ~~~~m~~ 469 (610)
.++.+.+
T Consensus 480 ~leel~k 486 (652)
T KOG2376|consen 480 LLEELVK 486 (652)
T ss_pred HHHHHHH
Confidence 9999875
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=3.5e-07 Score=90.99 Aligned_cols=218 Identities=14% Similarity=0.063 Sum_probs=169.7
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 037713 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
.+.|++..|.-.|+..++.. +.+...|.-|...-+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777764 44677888888888888888888888887764 356777778888888999899999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 326 LYDEMVSAGVK--------PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 326 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
.++.-+....+ ++..+-.. ..+.....+....++|-.+....+..+|..++..|.-.|--.|.+++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887654211 01000000 122223334556667777766567678899999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 398 IKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 398 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|+.. .++|+ ..+||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 77785 678999999999999999999999999999999999999999999999999999998776554
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=4.4e-05 Score=78.86 Aligned_cols=331 Identities=13% Similarity=0.098 Sum_probs=177.6
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--h--hhHHH
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN--L--FLWTA 207 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~ 207 (610)
.+..|..+|..|.-+...+|+++.+-+.|++...- ....|+.+...|.-+|.-..|..+.+.-..+. + .+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34556777777777777777777777777766532 45667777777777777777777776543221 2 22112
Q ss_pred HH-HH-HHhCCChHHHHHHHHHHHHc--CCC-CCCHhHHHHHHHHHhccc-----------cHHHHHHHHHHHHHhCCCC
Q 037713 208 LV-SG-LVQSRNEIDAFYSFIEMRRE--GVD-IVDPLVLSSIVGACANFA-----------VLELGKQIHGLVIALGYES 271 (610)
Q Consensus 208 li-~~-~~~~g~~~~A~~~~~~m~~~--~~~-~p~~~t~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 271 (610)
|+ .. +-+.+..++++++-.+.... +.. ...+..+..+.-+|.... ...++.+.++..++.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22 12 22346667777776666551 110 022333333333333211 123444555555554321
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--------- 338 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------- 338 (610)
|+.+.--+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+...+. -|+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 22222223444666777777776665554 346777777777777778888888877766543 111
Q ss_pred ------------HHHHHHHHHHHh------c---cC--------------CHHHHHHHHHH----hH---HhcC------
Q 037713 339 ------------EVTFVGLIYACS------H---VG--------------LVGKGRKLFKS----MI---EDYG------ 370 (610)
Q Consensus 339 ------------~~t~~~ll~a~~------~---~g--------------~~~~a~~~~~~----~~---~~~~------ 370 (610)
..|...++...- . .| +..++.+.... +. +..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 011111111111 0 00 00000000000 00 0001
Q ss_pred ---CCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 371 ---ITP--S------LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 371 ---~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
+.| + ...|....+.+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|..++.++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 011 1 123445556666777777776655555 4444 24445555555667778888888888888888
Q ss_pred CCCCcchHhHHHHhhhhcchhHHHH--HHHHHh
Q 037713 438 PEDPSSYILLSNVYASAAMWQHVSK--VRKLMS 468 (610)
Q Consensus 438 p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~ 468 (610)
|+++.....++.++.+.|+-.-|.+ +...+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 8888888888888888886665555 444443
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=4.8e-07 Score=86.96 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH--- 351 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--- 351 (610)
+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHh
Confidence 3333445667788888888888765 56677777888899999999999999999864 334 444445554443
Q ss_pred -cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch-hHHH
Q 037713 352 -VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNT-EMGT 427 (610)
Q Consensus 352 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~ 427 (610)
.+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++. ...| ++.+...++......|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 3468899999999876 45678888888999999999999999988876 3344 456666777777777877 6788
Q ss_pred HHHHHHhcCCCCCC
Q 037713 428 RVANHLLSLKPEDP 441 (610)
Q Consensus 428 ~~~~~~~~~~p~~~ 441 (610)
+.+.++....|+.+
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888754
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.7e-06 Score=83.14 Aligned_cols=214 Identities=11% Similarity=0.074 Sum_probs=128.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------hHHHHH
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV----------VSWTSI 310 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~l 310 (610)
...+.++..+..+++.+.+-+....... .++.-++....+|...|.+.+....-+...+..- .....+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455566666777777888777777765 5666667777778888777766655554433211 122234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhc
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRS 388 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~ 388 (610)
..+|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|.. ..-. =...+.+.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~-kGne~Fk~ 371 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEERE-KGNEAFKK 371 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHH-HHHHHHhc
Confidence 4566667788888888888766545544322 1122233333322221 122222 1111 13445667
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 389 GHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 389 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
|++.+|...+.++ ...| |...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.+..
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766 3334 4556666666677777777777777777777777666676666666666777777777666
Q ss_pred Hhh
Q 037713 467 MSV 469 (610)
Q Consensus 467 m~~ 469 (610)
-.+
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 544
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=7.7e-06 Score=84.56 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=88.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
++..+...|...|++++|.++++..++. .|+ +..|..-...|-+.|++++|.+.++.. ...+ |..+-+.-...+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 4455666777888888888888888762 444 678888888888888888888888777 3333 555555566667
Q ss_pred HhcCchhHHHHHHHHHhcCC--CCC-------CcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 418 KHHRNTEMGTRVANHLLSLK--PED-------PSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+.|++++|.+.+......+ |.. ......-+.+|.+.|++..|.+-+..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888888887776443 211 1122356778888898888887666554
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.2e-05 Score=84.86 Aligned_cols=439 Identities=13% Similarity=0.031 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHhCCCCC-CchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhH
Q 037713 21 TVKTLHAQIIKLGLHQY-GPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTML 96 (610)
Q Consensus 21 ~~~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 96 (610)
.+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .+..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34445555555555443 35688899999888899999999988654 467789999999999999999998843332
Q ss_pred HCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHH
Q 037713 97 ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176 (610)
Q Consensus 97 ~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 176 (610)
+......-...|....-.+...++...+..-|+...+.. |.|...|..|..+|.++|++..|.++|++...-++.++..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211011112223333344567788889999999888876 7788999999999999999999999998887554443332
Q ss_pred ---HHHHHHhcCCHHHHHHHHhhCCCC---------C-hhhHHHHHHHHHhCCChH-------HHHHHHHHHHHcCCCCC
Q 037713 177 ---MLSAYARSGRKKDAMEIFEQAPVR---------N-LFLWTALVSGLVQSRNEI-------DAFYSFIEMRREGVDIV 236 (610)
Q Consensus 177 ---li~~~~~~g~~~~A~~~~~~~~~~---------~-~~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~~~~~p 236 (610)
....-+..|.+.+|...+..+... + ..++-.+...+.-.|-.. ++++.|.-....... .
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~-~ 711 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ-S 711 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh-h
Confidence 222345667788887777654311 1 122222222222233322 333333322222211 2
Q ss_pred CHhHHHHHHHHHh-----------------------ccccH---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 037713 237 DPLVLSSIVGACA-----------------------NFAVL---E---LGKQIHGLVIALGYESCLFISNAIVDMYAK-- 285 (610)
Q Consensus 237 ~~~t~~~ll~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 285 (610)
+...|..+-.+|. ..+.. + .|-+.+.. ...+..+...|..|+.-|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHH
Confidence 3333333333222 11111 1 00000000 01111223444444444433
Q ss_pred --cC----CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 037713 286 --CS----DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 286 --~g----~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 356 (610)
+| +...|...+....+ .+..+||+|.-. ...|.+.-|...|-+-+... +-+..+|..+.-.|....+++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 22 23356666665543 577888887665 66677777777777666553 336778888888888999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCchhHHHH-
Q 037713 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPDEPTWAALLSACKHHRNTEMGTR- 428 (610)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~- 428 (610)
.|...|..... -.+.+...|--........|+.-++..+|..- +--|+..-|..........|+.+.-+.
T Consensus 868 ~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 868 HAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 99999988754 23334566665555566778888888888762 233555555544444555665555444
Q ss_pred ---------HHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 429 ---------VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 429 ---------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.+++.++..|++..+|...+......+.+.+|.+...+.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555678998899999999999999888887776554
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=2.7e-05 Score=78.78 Aligned_cols=380 Identities=12% Similarity=0.028 Sum_probs=213.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
.+++...+.+.+.++..- +-...|.....-.+...|+.++|.......++.. ..+.+.|..+.-.+-...++++|.+
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 456666666666665532 2222333333333445677777777666666544 3455667777666666777777777
Q ss_pred HHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037713 162 VFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235 (610)
Q Consensus 162 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 235 (610)
.|.... ..|...|.-+--.-++.|+++.....-.+.. ...-..|..+..++.-.|++..|..++++..+....+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 777654 2245555555555555666655554444333 2244678888888888888888888888887765444
Q ss_pred CCHhHHHHHHH------HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHH
Q 037713 236 VDPLVLSSIVG------ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSW 307 (610)
Q Consensus 236 p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~ 307 (610)
|+...+.-... .....|.++.+.+.+...... +......-..-.+.+.+.+++++|..++..+.. ||..-|
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 66666554332 233455555555554433221 112223334455667788888888888888765 343433
Q ss_pred HHH-HHHHHhcCChHHHH-HHHHH----------------------------------HHHcCCCCCHHHHHHHHHHHhc
Q 037713 308 TSI-IVGTAQHGQAEETL-ALYDE----------------------------------MVSAGVKPNEVTFVGLIYACSH 351 (610)
Q Consensus 308 ~~l-i~~~~~~g~~~~A~-~l~~~----------------------------------m~~~g~~p~~~t~~~ll~a~~~ 351 (610)
+-. ..++.+-.+.-+++ .+|.. +.+.|++| +|..+.+-+-.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 333 22332222222222 33333 33334332 22222222222
Q ss_pred cCCHHHHHHHHHHhHHhc-----CC------------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HH
Q 037713 352 VGLVGKGRKLFKSMIEDY-----GI------------TPSLQ--HYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEP-TW 410 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~-----~~------------~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~ 410 (610)
-...+ ++++.+..+ |- +|... ++-.++..|-+.|+++.|...++.. +-.|+.+ .|
T Consensus 333 p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 333 PEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred hhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 11111 222221110 11 34443 3455677788888888888888877 5455533 33
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
..=.+.+...|+++.|...++++.+++-.|...-.--++-..++.+.++|.++....-..|.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 33445577888888888888888888866644333455566778888888888777765554
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=1.2e-07 Score=90.98 Aligned_cols=244 Identities=10% Similarity=-0.009 Sum_probs=154.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 290 (610)
-+.-.|++..++.-.+ ....... .+......+.+++...|..+.+. .++.+.. .|.......+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~-~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPE-NKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCH-HHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCch-hHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 3444566666665444 2111111 22334445555666666554322 2222222 444444444444333334556
Q ss_pred HHHHHHHhcC-CC---ChhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 291 AAKDIFGRMR-RK---DVVSWT-SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 291 ~A~~~~~~~~-~~---~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
.+..-+++.. ++ +..++. .....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666565443 22 112222 2234456679999999988653 35667777889999999999999999999
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 366 IEDYGITPSLQ---HYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 366 ~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+ +..|.. ...+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+++++++++.+|.+
T Consensus 158 ~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 QQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred Hh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 64 344432 2333344444445799999999999 455788889999999999999999999999999999999
Q ss_pred CcchHhHHHHhhhhcch-hHHHHHHHHHhh
Q 037713 441 PSSYILLSNVYASAAMW-QHVSKVRKLMSV 469 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 469 (610)
+.+...++-+....|+. +.+.+.+..++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999998999988 667788887764
No 92
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.3e-05 Score=75.06 Aligned_cols=380 Identities=11% Similarity=0.085 Sum_probs=229.6
Q ss_pred HHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH-HhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCC
Q 037713 76 LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA-CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154 (610)
Q Consensus 76 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 154 (610)
+.-+..+.++..|+.+++--...+ .-........|.- +...|+.++|...+..+.... .++..++-.|.-.+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 455667789999999988765433 1122244444544 468999999999999988765 666666766777777789
Q ss_pred ChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 037713 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 155 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 234 (610)
.+.+|..+-...++ +...-..|...-.+.++-++-..+-+.+... ..---+|.+.....-.+++|+++|......+
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 99999998766542 2233334445556667766655555444322 1222234444444557899999999998876
Q ss_pred CCCHhHHHHHHH-HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHHhcC---------
Q 037713 235 IVDPLVLSSIVG-ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK--CSDIIAA--KDIFGRMR--------- 300 (610)
Q Consensus 235 ~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A--~~~~~~~~--------- 300 (610)
|+-...+.-+. +|.+..-++.+.+++..-.+. ++.+....|....-..+ .|+..++ ..+-+...
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 66666554444 456777778888877766554 23333444433332222 2222111 11111111
Q ss_pred ----------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hccC
Q 037713 301 ----------------------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC-----SHVG 353 (610)
Q Consensus 301 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-----~~~g 353 (610)
+--+.+--.++--|.+.++..+|..+.+++.- ..|-......+..+- ....
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 11122233345557788999999988776532 234443333333221 1222
Q ss_pred CHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 354 LVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAMP--FEPDEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
.+.-|.+.|+..-+. +..-|. .--.++...+.-..++++.+-.++.+. +..|...-..+..+.+..|++.+|+++|
T Consensus 338 HlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 355677777655432 333332 334456666666677888888777761 2233333445788899999999999999
Q ss_pred HHHhcCCCCCCcch-HhHHHHhhhhcchhHHHHHHHHH
Q 037713 431 NHLLSLKPEDPSSY-ILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 431 ~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
-++...+-.|...| ..|++.|.+.++...|..++-.+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88876664444444 47888999999998887765544
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=3.9e-06 Score=74.24 Aligned_cols=185 Identities=10% Similarity=0.003 Sum_probs=97.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
...|.-+|.+.|++..|..-+++.++... .+..++..+...|.+.|..+.|.+-|+.+++.. +.+-.+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44566678888888888888888877662 455566666666666666666666666666553 223445555555555
Q ss_pred hcCCHHHHHHHHHhcCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRR-K----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++-.+.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 55555555555555432 2 1234444444444555555555555554443211 2233334444444444444444
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
.+++..... ..++..+.-..|..-.+.|+-+.|-
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHH
Confidence 444444332 2244444444444444444444433
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=9.5e-06 Score=82.69 Aligned_cols=215 Identities=16% Similarity=0.153 Sum_probs=141.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHH
Q 037713 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 259 (610)
.+.+.|+++.|..-|-+.. ..--.|.+-.....|.+|+.+++.++... .-.-.|..+..-|+..|+++.|++
T Consensus 715 hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHH
Confidence 3455666777766664421 11123455677888999999999888765 345568888999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037713 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337 (610)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 337 (610)
+|.+. ..++--|++|.+.|++++|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-... .|
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p 853 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP 853 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc
Confidence 98653 24566789999999999999998888766 45567776777788888888888775442 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 417 (610)
+. .|..|-+.|..+..+++.++--. ..-..+.-.+..-|...|++.+|++-|-+.+ -|.+-++.|
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmy 918 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMY 918 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHh
Confidence 43 45566677777776666544311 1112344455566666777777776665543 234444445
Q ss_pred HhcCchhHHHHHH
Q 037713 418 KHHRNTEMGTRVA 430 (610)
Q Consensus 418 ~~~g~~~~a~~~~ 430 (610)
...+-++.|-++.
T Consensus 919 k~s~lw~dayria 931 (1636)
T KOG3616|consen 919 KASELWEDAYRIA 931 (1636)
T ss_pred hhhhhHHHHHHHH
Confidence 5555555544443
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00016 Score=76.66 Aligned_cols=211 Identities=13% Similarity=0.131 Sum_probs=129.2
Q ss_pred CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037713 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233 (610)
Q Consensus 154 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 233 (610)
+.+|+|.+.-++..+ ...|+.+..+-.+.|.+.+|++-|-+ ..|+..|..++....+.|.|++-.+.+...++..-
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 344444444444433 34677777777777777777776654 34556777777777788888777777766665543
Q ss_pred CCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh--------------------------HHHHHHHHHHhcC
Q 037713 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF--------------------------ISNAIVDMYAKCS 287 (610)
Q Consensus 234 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------------~~~~li~~y~~~g 287 (610)
. |. .=+.++-+|++.+++.+.+.+.. -|+.. -|..|...+...|
T Consensus 1165 E-~~--id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1165 E-PY--IDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred C-cc--chHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3 33 23455666666666555444331 23333 3344444444555
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+++.|...-.+ ..++.+|-..-.+|...+.+.-| +|-...+.....-..-|+.-|-..|-+++.+.+++...
T Consensus 1235 eyQ~AVD~aRK--Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L- 1306 (1666)
T KOG0985|consen 1235 EYQGAVDAARK--ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL- 1306 (1666)
T ss_pred HHHHHHHHhhh--ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh-
Confidence 55544433222 13677888888888776665433 23333344456667789999999999999999988763
Q ss_pred hcCCC-CCHHHHHHHHHHHHhc
Q 037713 368 DYGIT-PSLQHYTCLLDLLSRS 388 (610)
Q Consensus 368 ~~~~~-~~~~~~~~li~~~~~~ 388 (610)
|++ .....|+-|.-.|++-
T Consensus 1307 --GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1307 --GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred --chhHHHHHHHHHHHHHHHhc
Confidence 443 3456777777777764
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=2e-05 Score=73.58 Aligned_cols=289 Identities=12% Similarity=0.087 Sum_probs=130.3
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhCCChH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML---SAYARSGRKKDAMEIFEQAPVRNLFLWTALV---SGLVQSRNEI 219 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~ 219 (610)
|...+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-|+++.+..+.-+.+-+ ..+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 333444444555555555544444444444332 2344444444444444443322222222211 2344555555
Q ss_pred HHHHHHHHHHHcCCCC-----------C--CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 220 DAFYSFIEMRREGVDI-----------V--DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 220 ~A~~~~~~m~~~~~~~-----------p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
+|..=|+..++..... + ........+..+...|+...+......+++.. +.|...+..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhc
Confidence 5555555555443100 0 00111222333444555555555555555543 34555555566666666
Q ss_pred CCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHh
Q 037713 287 SDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT----FVGL---------IYACS 350 (610)
Q Consensus 287 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~l---------l~a~~ 350 (610)
|++..|+.=+.... ..++...--+-..+-..|+.+.++...++-.+ +.||... |..| .....
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654444332 33455555555555566666666665555544 2444321 1000 00111
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCch
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPS-----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNT 423 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 423 (610)
..+.+.++.+..+...+. .|. ...+..+-.+|...|++.+|++.-.+. .+.|| ..++.--..+|.....+
T Consensus 281 e~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred hhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 223333333333333331 222 122333444445555555555555444 44443 44454455555555555
Q ss_pred hHHHHHHHHHhcCCCCC
Q 037713 424 EMGTRVANHLLSLKPED 440 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~ 440 (610)
+.|+.-|+++.+.++++
T Consensus 358 D~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 55665555555555554
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=2.1e-05 Score=79.53 Aligned_cols=256 Identities=10% Similarity=-0.036 Sum_probs=141.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh----ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA----NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
.+...|++++|.+.+++..+... .|...+.. ...+. ..+..+.+.+.... .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 45566777777777777666541 23333331 11121 22333334433333 1111122233444556677778
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHH
Q 037713 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNE--VTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 287 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 360 (610)
|++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888877753 3456677777788888888888888887766422 1232 234466677778888888888
Q ss_pred HHHHhHHhcCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 361 LFKSMIEDYGITPSLQHY-T--CLLDLLSRSGHLDEAENL---IKAM-PFEP---DEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
+++.........+..... + .++.-+...|..+.+.+. ...- +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888775321111222111 1 223333334432222222 1111 1101 1122224555577888888898888
Q ss_pred HHHhcCC-C--------CCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 431 NHLLSLK-P--------EDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 431 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+.... . .........+.++...|++++|.+.+......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8776322 1 12344456677788999999999988776543
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=0.0001 Score=74.48 Aligned_cols=199 Identities=11% Similarity=-0.090 Sum_probs=94.8
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH-HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037713 71 SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL-VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149 (610)
Q Consensus 71 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 149 (610)
.|..+...+...|+++.+...+....+.....++......+ ...+...|+++.|...++.+++.. |.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 45555556666677777666666655432112222222111 122345677788887777777653 344433332 112
Q ss_pred HHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 037713 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---NLFLWTALVSGLVQSRNEIDAFYSFI 226 (610)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 226 (610)
+...|+. .+..+.+.+.++..... .......+...+...|++++|.+.++
T Consensus 86 ~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 86 AFGLGDF---------------------------SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHhccc---------------------------ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2222221 12222223333221111 11222333445556666666666666
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037713 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCL--FISNAIVDMYAKCSDIIAAKDIFGRMR 300 (610)
Q Consensus 227 ~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 300 (610)
+..+... .+...+..+..++...|++++|...+....+... .++. ..+..+...+...|++++|..+|++..
T Consensus 139 ~al~~~p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 139 RALELNP--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6665441 3444445555555555555555555555544321 1111 223345556666666666666666653
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=5.3e-05 Score=86.87 Aligned_cols=321 Identities=11% Similarity=-0.005 Sum_probs=199.0
Q ss_pred HHHhCCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCC------h--hhHHHHHHHH
Q 037713 149 MYAKCGLPNNARAVFDSIKL----KNSVSWTAMLSAYARSGRKKDAMEIFEQAP----VRN------L--FLWTALVSGL 212 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~------~--~~~~~li~~~ 212 (610)
.....|+++.+..+++.++. .+..........+...|++++|...+.... ..+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556777777777777642 123333334445567788888877776432 111 1 1112233445
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCCH----hHHHHHHHHHhccccHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHH
Q 037713 213 VQSRNEIDAFYSFIEMRREGVDIVDP----LVLSSIVGACANFAVLELGKQIHGLVIALGYE-----SCLFISNAIVDMY 283 (610)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~y 283 (610)
...|++++|...+++....-.. .+. .....+...+...|+++.|...+..+....-. ........+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6789999999999887763211 222 23344555567788999998888877654211 1123455667778
Q ss_pred HhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 037713 284 AKCSDIIAAKDIFGRMRR-------K----DVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPN--EVTFVGLIYA 348 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a 348 (610)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ..++..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999888776542 1 1223445555667789999999998887542 11122 3344455667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHY-----TCLLDLLSRSGHLDEAENLIKAMPF-E-PDE----PTWAALLSAC 417 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~~~ 417 (610)
....|+.++|.+.++..............+ ...+..+...|+.+.|.+.+..... . ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999999888875421111111111 1122445568899999998877621 1 111 1134556668
Q ss_pred HhcCchhHHHHHHHHHhcCC------CCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 418 KHHRNTEMGTRVANHLLSLK------PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...|+.++|...++++.... +....++..++.+|.+.|+.++|...+....+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999887542 112345667888899999999999888887653
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.3e-08 Score=58.97 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=26.0
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 167 (610)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888877774
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=4.3e-06 Score=78.98 Aligned_cols=181 Identities=8% Similarity=-0.024 Sum_probs=110.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-V---VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE--VTFV 343 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 343 (610)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556666667777777777777776653 21 1 35566666777777777777777777654221111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 037713 344 GLIYACSHV--------GLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414 (610)
Q Consensus 344 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 414 (610)
.+..++... |+.++|.+.|+.+.+. .|+ ...+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 444444443 5566677777666653 222 222221111100 00000 00112445
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCC---CcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPED---PSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56888999999999999999887765 368889999999999999999998887643
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00033 Score=80.42 Aligned_cols=323 Identities=9% Similarity=0.009 Sum_probs=193.3
Q ss_pred hccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC----CC---h-----hhHHHHHHHHHh
Q 037713 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL----KN---S-----VSWTAMLSAYAR 183 (610)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~-----~~~~~li~~~~~ 183 (610)
...|+.+.+...+..+.......+..........+...|++++|...++.... .+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666555555442111122222334444555667777777777765421 11 1 111122334557
Q ss_pred cCCHHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCC--HhHHHHHHHHHhcc
Q 037713 184 SGRKKDAMEIFEQAPV----RNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGV--DIVD--PLVLSSIVGACANF 251 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~--~~t~~~ll~~~~~~ 251 (610)
.|++++|...+++... .+. ..++.+...+...|++++|...+.+...... .++. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 7888888877766432 121 2445566667788899888888887764211 1022 23455566677888
Q ss_pred ccHHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHh
Q 037713 252 AVLELGKQIHGLVIAL----GYE--S-CLFISNAIVDMYAKCSDIIAAKDIFGRMRR------K--DVVSWTSIIVGTAQ 316 (610)
Q Consensus 252 ~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~ 316 (610)
|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999888887776553 221 1 234455666777778999999888877642 1 13344456667778
Q ss_pred cCChHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh
Q 037713 317 HGQAEETLALYDEMVSA----GVKPNEVTF--VGLIYACSHVGLVGKGRKLFKSMIEDYGITPS---LQHYTCLLDLLSR 387 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~----g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 387 (610)
.|+.++|.+.+++.... +..+..... ...+..+...|+.+.|.+++...... ..... ...+..+..++..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHH
Confidence 99999999988887542 111111111 11224445578999999887765431 11111 1124567778889
Q ss_pred cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 388 SGHLDEAENLIKAM-------PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 388 ~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.|+.++|...+++. +..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999998888776 22222 234555666688999999999999999877643
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00032 Score=69.86 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=156.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--c----hhHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES--C----LFISNA 278 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 278 (610)
.-.+.++..+..+++.|++-+....... -+..-++....++...|........-...++.|.+. + ......
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666777777888888887777654 355556666677777777777666666655554321 0 111222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCH
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLV 355 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 355 (610)
+..+|.+.++++.|...|.+...+ +.. ...+....++++.......-. .|.. .-.-.-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 445778888999999999886532 211 122234455555555544432 3332 1122236678889999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
..|...|.++++. .+-|...|..-.-+|.+.|.+..|+.-.+.. ...|+ ...|.-=..++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 4667899999999999999999998876655 44554 344544555667778999999999999
Q ss_pred hcCCCCCCcchHhHHHHhh
Q 037713 434 LSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 434 ~~~~p~~~~~~~~l~~~~~ 452 (610)
++.+|++...-..+.+.+.
T Consensus 453 le~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcCchhHHHHHHHHHHHH
Confidence 9999988665555555444
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.8e-07 Score=57.22 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=0.00037 Score=72.50 Aligned_cols=259 Identities=9% Similarity=0.009 Sum_probs=162.0
Q ss_pred CCchHHHHH--HHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCC--------CCCChh
Q 037713 37 YGPLPNTLI--DAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK--------LQPDHF 106 (610)
Q Consensus 37 ~~~~~~~li--~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~pd~~ 106 (610)
|+.+-..++ +.|.--|+.+.|.+-.+.+. +-..|..|.+.+++..+.+-|.-.+-.|....+ ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 555556665 45677899999988777664 345699999999998888877766665543111 1222 1
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-ChhhHHHHHHHHHhcC
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSG 185 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g 185 (610)
+=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.=..- =..||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 21222223356788999999998877643 3456777889999988876532211 1235656666666778
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+.+.|++.|++...+--.....|. .++.....+.+.+ .|+..|.--..-.-..|+.+.|..+|..+.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 888888888875433111111110 0111111111111 344555555555666788888888877665
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
. |-+++...|-.|+.++|-++-++ ..|..+...+...|-..|++.+|...|.+.+
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4 44566666777888888777665 3456666677788888888888888887654
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=0.00025 Score=66.48 Aligned_cols=306 Identities=9% Similarity=0.024 Sum_probs=176.7
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHH---HHHhccCCcHHHHHHHHHHHhcCCCCChhH-HHHHHHHH
Q 037713 75 ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV---KACGSLGATRLGKQVHACFVLSPFCDDDVV-KSSLVDMY 150 (610)
Q Consensus 75 li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~ 150 (610)
+-..+...|++..|+.-|...++ ..|+ .|.++. ..|...|....|..-+...++. .||-.. --.-...+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve---~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE---GDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc---CCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 44455556666666666666654 2232 333332 2344555555555555555543 344221 11122345
Q ss_pred HhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
.+.|.++.|..-|+.+.+.++. -+....++.+.-..++-+. ....+..+..+|+...|++....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 5666666666666655432210 0001111111111111111 11234455667777777777777776
Q ss_pred cCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh---
Q 037713 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVV--- 305 (610)
Q Consensus 231 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~--- 305 (610)
.. |-|...+..-..+|...|.+..|..-+..+.+..-.. ....--+-..+...|+.+.++....+..+ ||-.
T Consensus 184 i~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 54 3577777777777777777777776666666654333 33333455666677777777777777654 3211
Q ss_pred -HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 306 -SWTSI---------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTF---VGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 306 -~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
.|-.+ +......+++.++++-.+...+.......++| ..+-.++...|.+.+|++...+... +.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d 337 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---ID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cC
Confidence 12111 22345578888888888887775433223333 3455677788999999999988865 55
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 373 PS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 373 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
|+ +.++.--..+|.-...+++|..-|+.. ...|+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 65 788888889999999999999999887 44443
No 107
>PLN02789 farnesyltranstransferase
Probab=98.49 E-value=5.2e-05 Score=73.95 Aligned_cols=163 Identities=14% Similarity=0.140 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037713 289 IIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQA--EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363 (610)
Q Consensus 289 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 363 (610)
+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++.+...+ |..+|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555544432 2334455443334444432 4556666666554333 45555555555556666666666666
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CchhHHHHHH
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRS---GH----LDEAENLIKAM-PFEP-DEPTWAALLSACKHH----RNTEMGTRVA 430 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 430 (610)
++++. -+-|...|+.....+.+. |. .+++.+...++ ...| |...|+.+...+... ++..+|..++
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66553 223344444444444333 22 23455555343 4444 466777777777663 3456688888
Q ss_pred HHHhcCCCCCCcchHhHHHHhhhh
Q 037713 431 NHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 431 ~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
.++...+|.++.+...|+++|...
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhh
Confidence 888888888888888899999763
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=1.4e-05 Score=72.57 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCc--hhHH
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA-CKHHRN--TEMG 426 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 426 (610)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777777665 34566788888888888888888888888877 5555 45566666665 356666 4888
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.++++++++.+|+++.++..++..+...|++++|...++.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888654
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=9.4e-05 Score=67.86 Aligned_cols=301 Identities=14% Similarity=0.084 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHH-HHHHHHhC
Q 037713 142 VKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR--NLFLWTA-LVSGLVQS 215 (610)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~ 215 (610)
-+++.+..+.+..++++|.+++..-.++ +....+.+..+|-...++..|-..++++... ...-|.. -...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3556666667888888888887766544 4456677777888888888888888876533 2222222 13455667
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH--HhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA--CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
+.+.+|+++...|... |+-..-..-+.+ -.+.+++..++.+.++.... .+..+.+...-...+.|+++.|.
T Consensus 92 ~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 7788888887777542 111111111111 12334444444444433211 12223333333344555555555
Q ss_pred HHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 294 DIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 294 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
+-|+...+ .....||..+..| +.|+++.|+++..+++++|++-.+ -++ .|...++..+ +..
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP-Elg--------IGm~tegiDv-rsv---- 229 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP-ELG--------IGMTTEGIDV-RSV---- 229 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC-ccC--------ccceeccCch-hcc----
Confidence 55555543 2344454433332 345555555555555555544111 000 0100000000 000
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 370 GITPS-------LQHYTCLLDLLSRSGHLDEAENLIKAMP----FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 370 ~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
| .|- +..+|.-...+.+.|+++.|.+-+..|| -+.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 230 g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 230 G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0 001 1223333334568899999999999994 23467776654332 234556677777777788888
Q ss_pred CCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 439 EDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 439 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
--+.++..+.-+|++..-++-|..++.+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 7778999999999999999988887654
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=8.2e-06 Score=69.98 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 037713 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF 403 (610)
Q Consensus 325 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 403 (610)
.+|++..+. .|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3443 44566777788888888888888765 23446677888888888888888888888877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 404 EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 404 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
.| +...+..+..++...|+.++|...++++++..|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 56677777778888888888888888888888888877766665543
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=2.6e-05 Score=85.33 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=162.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
|.+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777888888888999999988887642 2457888888888888888889999998774 212456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD---EPTWAALLSAC 417 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~ 417 (610)
|..|...|.+.+..++|.++++.|.++++ -....|...++.+.+..+-++|..++++. ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999999766 56678999999999999999999999877 33343 33344455556
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.+.|+.+.+..+|+..+...|.....|...+++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999988889999999999999999999999999877664
No 112
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.43 E-value=0.0001 Score=78.26 Aligned_cols=372 Identities=13% Similarity=0.040 Sum_probs=204.0
Q ss_pred CchHHHHHHHHhHHCCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 84 LPQKTISIFSTMLALDKLQPD-HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
+...|+..|-+..+. .|+ ...|..|...|....+...|.+.|..+.+.+ +.|...+.+..+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 366677777666553 333 3457777777777778888888888888776 66777888899999999999999888
Q ss_pred HHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 037713 163 FDSIKLKN-----SVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 163 ~~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 234 (610)
.-...+.+ ...|-..--.|.+.++..+|..-|+.... +|...|..+..+|...|++..|+++|.+.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 54443332 12333344456778888888888876553 366788889999999999999999998877654
Q ss_pred CCCH-hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHHHHHHHHHhcCC-----
Q 037713 235 IVDP-LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK-------CSDIIAAKDIFGRMRR----- 301 (610)
Q Consensus 235 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~~A~~~~~~~~~----- 301 (610)
|+. ..---....-+..|.+.++...++.+.... .......+.|...+.+ .|-..+|..+|+.-.+
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333 222222233456778888887777765531 0111122223322222 2333333333332211
Q ss_pred ------CChhHHHHHHHHHHh---cC--ChH-HHHH-HHHHHHHcCCCCC--------------------HHHHHHHHHH
Q 037713 302 ------KDVVSWTSIIVGTAQ---HG--QAE-ETLA-LYDEMVSAGVKPN--------------------EVTFVGLIYA 348 (610)
Q Consensus 302 ------~~~~~~~~li~~~~~---~g--~~~-~A~~-l~~~m~~~g~~p~--------------------~~t~~~ll~a 348 (610)
.+...|-.+-+++.- .. -+. -.+. ++.+....+.-|+ ..+|..|...
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 133334333332211 00 000 0001 1111222222221 1222222222
Q ss_pred Hhc----cC----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 037713 349 CSH----VG----LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACK 418 (610)
Q Consensus 349 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 418 (610)
|.+ .| +...|...+...++- ...+...|+.|.-+ ...|.+.-|..-|-+- ..+....+|..+.-.|.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 221 11 122344444444331 12233344443332 4445555554444333 12234566666666677
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
...+++.|...|.+...++|.+...+...+.+-...|+.-++..++..
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777776666666667766666666554
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=9.2e-05 Score=81.18 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=171.1
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037713 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK--------NSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199 (610)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 199 (610)
|+.++... |.+...|-..|......++++.|++++++.... -...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444433 556778888888888999999999998887532 245788888888888888888888888765
Q ss_pred C-C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC-CchhHH
Q 037713 200 R-N-LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-SCLFIS 276 (610)
Q Consensus 200 ~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 276 (610)
- | ...|..|...|.+.+++++|.++|+.|.+.= . -....|...+....+..+-+.|+.++.++.+.-.. ..+.+.
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-G-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-c-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 4 3 3568888889999999999999999998752 1 46677888888888888888888888888776322 245666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE--VTFVGLIYACSH 351 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 351 (610)
.-.+.+-.++|+.+.++.+|+.... +-...|+..|..=.++|+.+.+..+|++....++.|-. ..|...|..=-+
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 7777888899999999999998864 35678999999999999999999999999988877653 344444444444
Q ss_pred cCCHH
Q 037713 352 VGLVG 356 (610)
Q Consensus 352 ~g~~~ 356 (610)
.|+-+
T Consensus 1684 ~Gde~ 1688 (1710)
T KOG1070|consen 1684 HGDEK 1688 (1710)
T ss_pred cCchh
Confidence 44433
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.0053 Score=65.14 Aligned_cols=409 Identities=11% Similarity=0.090 Sum_probs=201.9
Q ss_pred cCCChHHHHHHHccCCC--CCcchHHHHHHHH--HcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHH
Q 037713 50 KCDLVQYAHHLLEEMPQ--RDHVSWASILTAY--NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125 (610)
Q Consensus 50 ~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~ 125 (610)
..+++..|.+..+++.+ ||.. |...+.++ .+.|+.++|..+++.....+ . -|..|...+-..|...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-G-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-C-CchHHHHHHHHHHHHHhhhhHHH
Confidence 34667777776666553 3332 44555544 46777777777776665433 1 26677777777777777777777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH----HHHHHHhcCCCChhhHHHHHHHHHhcC----------CHHHHH
Q 037713 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN----ARAVFDSIKLKNSVSWTAMLSAYARSG----------RKKDAM 191 (610)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~li~~~~~~g----------~~~~A~ 191 (610)
.++++..+. .|+......+..+|.+.+++.+ |.+++...+++--.-|+. ++.+.+.- -+.-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 777777664 3446666666677777666543 445555444444444443 22221110 123344
Q ss_pred HHHhhCCCCC-h-hh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 192 EIFEQAPVRN-L-FL---WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 192 ~~~~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
+.++.+.+.+ . .+ .-.-...+-..|++++|++++..=......+.+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555544333 1 11 11112234456667777777633322222224444445556666666777777777776666
Q ss_pred hCCCCchhHHHHHHHHHHhc----------------CCHHHHHHHHHhcCCC-ChhHHHHHHHHHH---hcCChHHHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKC----------------SDIIAAKDIFGRMRRK-DVVSWTSIIVGTA---QHGQAEETLAL 326 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~----------------g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~A~~l 326 (610)
.|... |...++.+.++ +.++...+...+.... .-..|-+-+.++. .-|+.++++..
T Consensus 255 k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 65332 33322222211 1111111111111110 1112222222222 33555555444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH-------HHHHHHHHHHhcCCH-----HHH
Q 037713 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ-------HYTCLLDLLSRSGHL-----DEA 394 (610)
Q Consensus 327 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~-----~~A 394 (610)
|-+- -|-+|- +..=+..|...=..++-..++..... ..++.. -+.+.+....-.|.+ +.-
T Consensus 331 y~~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 331 YFKK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 3321 222221 11111111111122222222222211 111111 122333322223321 111
Q ss_pred HHHHHhC------C------CCCC---------HHHHHHHHHHHHhcCchh---HHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 395 ENLIKAM------P------FEPD---------EPTWAALLSACKHHRNTE---MGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 395 ~~~~~~m------~------~~p~---------~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
..++.+. + .-|. ..+.+.|+..|.+.++.. +|+-+++..+..+|.|+..-..|+.+
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiri 482 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 1222111 1 1222 223456777788877654 56667777778889888888899999
Q ss_pred hhhhcchhHHHHHHHHHhhCCCccCC
Q 037713 451 YASAAMWQHVSKVRKLMSVMEVKKEP 476 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (610)
|.-.|-+..|.+.++.+.-+.+..++
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHhcCChhHHHHHHhcchHHhhhcc
Confidence 99999999999999988776666543
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.0012 Score=68.92 Aligned_cols=166 Identities=9% Similarity=-0.009 Sum_probs=102.9
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCC-----------Cc-chHHHHHHHHH
Q 037713 13 CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-----------DH-VSWASILTAYN 80 (610)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------~~-~~~~~li~~~~ 80 (610)
+...|+.+.|-+-...+. +..+|..|.+|+.+..+++-|.-.+..|... |. ..=....-.-.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 345677777776655443 3467999999999999888888877777521 11 11111122234
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 160 (610)
+-|..++|..+|++-.+.+ .+=+.|-..|.+++|.++-+.=-+..+ ..+|..-..-+-..++.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5688889999998877632 344556677888888887654322222 123433444445567777777
Q ss_pred HHHHhcCC-----------------------CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 161 AVFDSIKL-----------------------KNSVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 161 ~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
+.|++-.. +|...|.-...-+-..|+++.|+.+|...
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 77765431 24444555555556678888888887753
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=4.1e-05 Score=72.22 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=126.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-S-CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-V---VSW 307 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~ 307 (610)
.....+......+...|+++.|...++.+.+.... | ....+..+..+|.+.|++++|...|+++.+ |+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 56677888888899999999999999999886422 1 124677889999999999999999999864 32 2 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 037713 308 TSIIVGTAQH--------GQAEETLALYDEMVSAGVKPNEV-TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378 (610)
Q Consensus 308 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (610)
..+..++.+. |+.++|.+.|+++... .|+.. ....+.... . ..... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~------~~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----Y------LRNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----H------HHHHH-H--------HHH
Confidence 5566666654 7889999999999876 34432 221111110 0 00000 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 379 TCLLDLLSRSGHLDEAENLIKAM----PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
..+...|.+.|++++|...+++. +-.| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788889999999888877 2223 246788888889999999999998887766554
No 117
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.00041 Score=67.73 Aligned_cols=206 Identities=11% Similarity=-0.008 Sum_probs=132.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
+-..+...++.++|+.++.++.+... -+...|..--.++...+ .++++...++.+.+.. +.+..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33445566777777777777776552 23444444444445555 4677777777777664 33445566555555555
Q ss_pred CCH--HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CC----
Q 037713 287 SDI--IAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV---GL---- 354 (610)
Q Consensus 287 g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~---- 354 (610)
|+. +++..+++.+.+ +|..+|+...-.+...|+++++++.++++++..+. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 652 567777776653 57788888888888889999999999999887655 555666555555444 22
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 037713 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS----GHLDEAENLIKAM-PFEP-DEPTWAALLSACKH 419 (610)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 419 (610)
.++..++...++.. .+-|...|+.+..+|... +...+|.+++.+. ...| +......|+..|+.
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 24567777666652 345667888888888763 3456677777775 3344 45666667777664
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=7e-05 Score=67.98 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655443332221 01223566778888888877753 347888999999999999999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDL-LSRSGH--LDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
..|+...+- .+.+...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988763 34467888888886 467777 59999999988 5556 46677777788999999999999999999
Q ss_pred cCCCCCCcch
Q 037713 435 SLKPEDPSSY 444 (610)
Q Consensus 435 ~~~p~~~~~~ 444 (610)
++.|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998775444
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.32 E-value=0.0026 Score=63.55 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc---cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA---VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 294 (610)
.+++..+++.....-.. -+..+|..+..---..- ..+....++..+...-...-..+|..+++.-.+..-+..|+.
T Consensus 309 t~e~~~~yEr~I~~l~~-~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLK-ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 46677777776654433 45555555544322222 255555666666555333334567778888888888899999
Q ss_pred HHHhcCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 295 IFGRMRR----K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 295 ~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
+|.+..+ + ++...++++.-|| .++..-|.++|+--... -+|. .--...+.-+++.++-..+..+|+.....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9988874 2 6777888888777 46777888888875543 2233 33345667777888888899999998886
Q ss_pred cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCchh
Q 037713 369 YGITPSL--QHYTCLLDLLSRSGHLDEAENLIKAM----P--FEPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 369 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~~~ 424 (610)
++.|+. ..|..+++-=..-|++..+.++-+++ + ..|....-..++.-|.-.+.+.
T Consensus 465 -~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 465 -VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred -cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 666654 78999999888899999988887776 2 2332233344555555555443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00032 Score=69.27 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=127.5
Q ss_pred CHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037713 288 DIIAAKDIFGRMRR------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 288 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
++.+++..-++++. ++.......+.+.........+-.++- +... ..-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 35556666666663 345555555555443333333333322 2222 111223344433 45567999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++++|+.+++.....+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 999987 45667777788889999999999999999998 66777 667778888899999999999999999999999
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|+..|..|+.+|...|+..++...+.+..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999888888776653
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=1.2e-05 Score=67.90 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
....-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+||.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345556666778899999999999988 5556 46678888888999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHH
Q 037713 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515 (610)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 515 (610)
..|+.+.|.+.|+...... ..+|+..++.++.+..+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999875421 134566666666666665554
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.30 E-value=1.5e-05 Score=68.34 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=90.6
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3444 4566788899999999999999988 5555 67788889999999999999999999999999
Q ss_pred CCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 438 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999886543
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0061 Score=61.04 Aligned_cols=424 Identities=10% Similarity=0.065 Sum_probs=250.6
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l 111 (610)
+.|...|+.||.-+... .++++++.++++..+ ....|..-|..-.+..+++....+|.+.+..- -+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHHH
Confidence 45788899999876655 999999999998743 45679999999999999999999999887632 345555555
Q ss_pred HHHHhc-cCCcHHH----HHHHHHH-HhcCCCCC-hhHHHHHHHH---------HHhCCChHHHHHHHHhcCCC------
Q 037713 112 VKACGS-LGATRLG----KQVHACF-VLSPFCDD-DVVKSSLVDM---------YAKCGLPNNARAVFDSIKLK------ 169 (610)
Q Consensus 112 l~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~------ 169 (610)
|.--.+ .++.... .+.|+.. .+.|+++- ...|+..++. |....+++..++++.++..-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543322 2223222 2333333 34454443 3346655554 34445677778888877632
Q ss_pred ----ChhhHHHHHHHH-------HhcCCHHHHHHHHhhCC------CCC---------------hhhHHHHHHHHHhCCC
Q 037713 170 ----NSVSWTAMLSAY-------ARSGRKKDAMEIFEQAP------VRN---------------LFLWTALVSGLVQSRN 217 (610)
Q Consensus 170 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~------~~~---------------~~~~~~li~~~~~~g~ 217 (610)
|-..|..=|+.. -+...+-.|.+++++.. .++ +..|-.+|..--.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 222222222211 12233444555554422 011 1124444433222111
Q ss_pred h--------HHHHHHHHHH-HHcCCCCCCHhHHH-HHH----HHHhcccc-------HHHHHHHHHHHHHhCCCCchhHH
Q 037713 218 E--------IDAFYSFIEM-RREGVDIVDPLVLS-SIV----GACANFAV-------LELGKQIHGLVIALGYESCLFIS 276 (610)
Q Consensus 218 ~--------~~A~~~~~~m-~~~~~~~p~~~t~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 276 (610)
- ....-.+++. .-.+.. |+..... .-+ +.+...|+ -+++..+++..+..-...+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~-peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYH-PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122222221 122222 3322111 111 11222332 34555666665554434444555
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 037713 277 NAIVDMYAKCS---DIIAAKDIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYA 348 (610)
Q Consensus 277 ~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 348 (610)
.++.+.--..- ..+.....+++... .-..+|...+..-.+..-...|..+|.+..+.+..+ +....++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 54443211111 23344444444432 335678888888888888999999999999998888 66777777776
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCch
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPD--EPTWAALLSACKHHRNT 423 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~ 423 (610)
++ .++.+.|.++|+.-.+++|- ++.--...++-+...++-..|..+|++. .+.|+ ...|..+|.--..-|+.
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 65 58889999999998886543 4455567888889999999999999998 23444 57899999999999999
Q ss_pred hHHHHHHHHHhcCCCCC----CcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 424 EMGTRVANHLLSLKPED----PSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
..+.++-++....-|.+ ...-..+.+-|.-.+.+..-..-++.
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 99999999887665522 12334556666666655443333333
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=4.5e-05 Score=78.37 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=143.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcC
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHG 318 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 318 (610)
-..+...+.+.|-...|..+++.. ..|..+|.+|...|+..+|..+..+-.+ ||...|..+.+..-...
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 334445555566666666666543 2345566667777766666666554443 45566666666665555
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
-+++|.++++..-.. .-..+.....+.++++++.+.|+.-.+- .+....+|-.+.-+..+.++++.|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 666666666553221 0001111122356777777777665542 2234567777777778888999998888
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 399 KAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 399 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
..- ...|| ...||.+-.+|.+.|+..+|...+.++++-+-.++..+....-+..+.|.|++|.+.+..+.+....
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 776 66676 5679999999999999999999999999888777777777777788899999999998888654443
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=5.8e-05 Score=77.62 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=159.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
+++|-...-..+.+.+..+|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+. +||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555666778899999999999999999974 67888899999999999999999988873 789999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 425 (610)
..-...-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876542 1122222334579999999999865 4444 46789888888899999999
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|.+.|.....++|++..+|+.++.+|.+.|+..+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999877664
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=9.3e-05 Score=79.64 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=94.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 381 (610)
++..+-.|.....+.|++++|..+++...+. .|| ......+..++.+.+.+++|....+.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4666677777777788888888888877764 555 34555667777778888888887777765 233345666777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 382 LDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
..++.+.|++++|.++|++. .-.|+ ..++.++..++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 77777888888888888777 22333 667777777777888888888888887766543
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.00018 Score=78.28 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=146.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH-HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (610)
+...|..|+..|...+++++|.++.+...+.. |+... |..+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 56789999999999999999999999777765 44333 22222345555555444433 23
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
++......++.-...+...|.. .+-.++-.+..+|.+.|+.++|...|+++.+.. +-|....|.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333333334333333333332 233466778888888888888888888888876 33677788888888888 8888
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHH
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----------------------PFEPDEPTWAALLS 415 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------~~~p~~~~~~~ll~ 415 (610)
|.+++.+++.. |...+++.++.+++.++ +..--..++..+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 88888777653 33333444444444443 22223444555567
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.|...++++.+..+++.+++.+|.|..+..-++..|. +++.+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 7888899999999999999999999888888888886 44444
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=4.3e-05 Score=69.24 Aligned_cols=126 Identities=14% Similarity=0.079 Sum_probs=80.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 420 (610)
..+-.++...|+-+....+...... ..+.|......++....+.|++.+|...|++. +-.||...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4444555556666666655555432 23334445555666677777777777777666 3345666677666667777
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
|+.+.|...|.+++++.|.++..+..|+..|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777766665443
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00012 Score=66.40 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=70.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 391 (610)
..+...|+.+....+..+..... .-|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccCh
Confidence 33444444444444444332211 11222233344444555555555555555543 3444455555555555555555
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 392 DEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
++|..-|.+. .+.|+ +...+.|...+.-.|+.+.|..++.......+.+...-..|+.+....|++++|..+
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555544444 23332 333444444455555555555555555544444444455555555555555555543
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3e-06 Score=52.64 Aligned_cols=34 Identities=35% Similarity=0.794 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 338 (610)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999987
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00011 Score=73.75 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=154.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 290 (610)
-+.++|+..+|.-.|+..++..+ -+...|..|....+..++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 35667777777777777777662 356666666666667777777777777776654 345666777777777778777
Q ss_pred HHHHHHHhcCCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 291 AAKDIFGRMRRKD-VVSWTSII---------VGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 291 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
+|.+.|+.-.... ...|...- ..+..........++|-++. +.+.++|......|.-.|--.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777776543100 00000000 11111222334555665554 4554466666666766778889999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 360 KLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
..|+.+.. ++| |...||.|...++...+.++|..-|++. .++|+ +..+..|.-+|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999875 455 5688999999999999999999999988 78887 567778888899999999999999988866
Q ss_pred CCC
Q 037713 437 KPE 439 (610)
Q Consensus 437 ~p~ 439 (610)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 543
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0028 Score=57.76 Aligned_cols=175 Identities=17% Similarity=0.096 Sum_probs=107.0
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037713 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339 (610)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 339 (610)
+.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 34444444333343333334456777888888888877733 2222222334455667778888888888763 255
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037713 340 VTFVGLIYACSH----VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAAL 413 (610)
Q Consensus 340 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 413 (610)
.|.+.|..++.+ .+.+.+|.-+|++|.+ ..+|+..+.+-+..+....|++++|..++++. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 666666666553 3457777888888765 36677777777777777778888888877776 323345555555
Q ss_pred HHHHHhcC-chhHHHHHHHHHhcCCCCCC
Q 037713 414 LSACKHHR-NTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 414 l~~~~~~g-~~~~a~~~~~~~~~~~p~~~ 441 (610)
+-.-...| +.+.-.+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 55544444 44555566667766667653
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00012 Score=72.88 Aligned_cols=130 Identities=9% Similarity=0.079 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 353 (610)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++.+..... +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566666777889999999999888777777778888888888889999988888652 225555555666788889
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 037713 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406 (610)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 406 (610)
+++.|..+.+++.+. .+-+..+|..|..+|.+.|++++|+..++.+|..|.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999998888762 333457899999999999999999999988875543
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=4.5e-06 Score=51.82 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=31.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCCh
Q 037713 70 VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDH 105 (610)
Q Consensus 70 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~ 105 (610)
.+||++|.+|++.|++++|.++|++|.+.| ++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERG-IEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCC
Confidence 479999999999999999999999999988 88873
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=4.6e-05 Score=64.79 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
.....+...+.+.|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666777777777777665 3333 455566666667777777777777777777777777777777777777
Q ss_pred hcchhHHHHHHHHHhh
Q 037713 454 AAMWQHVSKVRKLMSV 469 (610)
Q Consensus 454 ~g~~~~a~~~~~~m~~ 469 (610)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766654
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00011 Score=73.19 Aligned_cols=117 Identities=9% Similarity=0.082 Sum_probs=68.4
Q ss_pred HHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 037713 76 LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155 (610)
Q Consensus 76 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 155 (610)
+..+...++++.|+++|+++.+. .|+. ...+.+.+...++-.+|.+++.+.++.. +.|....+...+.+.+.++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 34444456666666666666553 2442 2234455555555556666666665443 4455555555666666666
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 156 PNNARAVFDSIK--LK-NSVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 156 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
.+.|+.+.++.. .| +..+|..|..+|.+.|+++.|+..++.+|
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666665 23 44566666667777777777776666665
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0048 Score=67.53 Aligned_cols=60 Identities=7% Similarity=-0.020 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
++-.+..+|-+.|+.++|..+++++.+.. |-|+...+.+...++.. ++++|.+++..+++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 34455566666666666666666666655 24555555555555555 55555555554443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.0023 Score=63.43 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV-GLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCL 381 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 381 (610)
...+......+...|+.++|+..++.++.. .||...|. .....+...++.++|.+.++.+.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 344444555566789999999999998876 55555444 556788899999999999999976 3455 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 382 LDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.++|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|...|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 89999999999999999887 34447888999999999999987776543 456778899999
Q ss_pred HHHHHHHHhhCCC
Q 037713 460 VSKVRKLMSVMEV 472 (610)
Q Consensus 460 a~~~~~~m~~~~~ 472 (610)
|.......+++.-
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 9998888776543
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1e-05 Score=49.84 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 337 (610)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.0012 Score=71.26 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=119.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFV 343 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 343 (610)
.++.+...+-.|.....+.|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 4566788888999999999999999999999874 4 5677888999999999999999999999986 444 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLS 415 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 415 (610)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+..++.+.|+.++|...|++. ...|....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 777889999999999999999987 33445788999999999999999999999988 34455556655543
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.99 E-value=0.00019 Score=60.99 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=86.1
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 037713 326 LYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF 403 (610)
Q Consensus 326 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 403 (610)
+|++.... .|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455443 343 344556777788889999999999888763 3456788888888999999999999988877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 404 EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 404 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4667777778888999999999999999999997754
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1e-05 Score=49.84 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 103 (610)
+.+||.+|.+|++.|+++.|.++|++|.+.| ++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g-v~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG-VKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 3578888888888888888888888888877 776
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0082 Score=54.82 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 286 CSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+++.+|.-+|++|.+ |+..+.|.+..++...|++++|..++++......+ +..|...++-+-...|..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 3456666666666654 34445555555566666666666666666655333 445555555444444443
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.005 Score=55.74 Aligned_cols=170 Identities=12% Similarity=0.185 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRK--D---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
+..++-+...+|+.+.|..+++++..+ + +.-..+| -+-..|++++|+++++...+.. +-|.+++..=+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 333444455567777777777766532 1 1111111 2344788999999999998875 346677776666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH-h--cCchhH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACK-H--HRNTEM 425 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~-~--~g~~~~ 425 (610)
..|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+. . ..+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67877788888888877 47889999999999999999999999999998 4445 3444555555532 2 347889
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
+.++|.+.+++.|.+.. .+..+|..
T Consensus 210 arkyy~~alkl~~~~~r---al~GI~lc 234 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLR---ALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHhChHhHH---HHHHHHHH
Confidence 99999999999985433 44444433
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.036 Score=54.11 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+..|.-+...|+...|.++-.+..-||-..|...+.+|+..++|++-.++... +-.++-|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455567789999999999999889999999999999999999887765432 22347788899999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 417 (610)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |......+...|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9999887663 12456788899999999987755543 444444444433
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00063 Score=58.50 Aligned_cols=51 Identities=6% Similarity=0.064 Sum_probs=23.2
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
...+...|++++|+..++.. ...+-.+..+..++++|.+.|++++|...++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344455555555554332 1112223344455555555555555555544
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00034 Score=57.76 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLS 415 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 415 (610)
+..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|...++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555556666666666666655321111 1234445666666666666666666655 22222 334555556
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
++...|+.+.|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666677777777777777777776543
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.2e-05 Score=46.33 Aligned_cols=31 Identities=42% Similarity=0.737 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 335 (610)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.0003 Score=54.88 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877776 33343 3556666677777788888888888888888877777788888888888
Q ss_pred chhHHHHHHHHHhh
Q 037713 456 MWQHVSKVRKLMSV 469 (610)
Q Consensus 456 ~~~~a~~~~~~m~~ 469 (610)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776543
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.002 Score=55.35 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKP--NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLL 382 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li 382 (610)
|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+... ...|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 3666777777777776652211 1223334456666777777777777777664 222221 2344456
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 383 DLLSRSGHLDEAENLIKAMPFE-PDEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
..+...|++++|+..++..+.. .....+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677777777777777665222 23344455555677777777777777664
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0021 Score=58.07 Aligned_cols=181 Identities=13% Similarity=0.164 Sum_probs=133.8
Q ss_pred cCCHHHHHHHHHhcCC--------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCH
Q 037713 286 CSDIIAAKDIFGRMRR--------KDV-VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL-IYACSHVGLV 355 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 355 (610)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++...- |...-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4578888888888752 232 234445566677899999999999988763 444332222 1223456889
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
++|.++++.+.++ -+.|..+|-.=+-+.-..|+--+|++-+... .+..|...|.-|...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999884 3566777777777777788877887776665 45568999999999999999999999999999
Q ss_pred hcCCCCCCcchHhHHHHhhhhc---chhHHHHHHHHHhhC
Q 037713 434 LSLKPEDPSSYILLSNVYASAA---MWQHVSKVRKLMSVM 470 (610)
Q Consensus 434 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 470 (610)
+=..|-++..+..+++++.-.| +.+-+.+.+....+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999888889999877665 445566666665543
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.72 E-value=4.5e-05 Score=45.66 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 233 (610)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877663
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.025 Score=55.24 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+.+..|.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-.++... + -.+..|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------k-KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------K-KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------C-CCCCChHHHHHHHHHCC
Confidence 4555566667778888888888888778888888888888888888876655321 1 33477778888888888
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 297 (610)
...+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 877777766551 12567788999999988866533
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=4.2e-05 Score=58.73 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
.|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 333344445555555555555555 44444443444445555555555555555544
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.00052 Score=56.63 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CcchHhH
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED---PSSYILL 447 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 447 (610)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999988 33343 3456668888999999999999999999988875 4568899
Q ss_pred HHHhhhhcchhHHHHHHHHHhhCC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999987653
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.58 E-value=0.16 Score=54.44 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=147.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHh--hcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAY--GKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTI 89 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 89 (610)
..+....|.+-...+++.. |+. .|...+.++ .|.|+.++|..+++.... .|..|...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4456677777777776653 332 345555555 578999999999987653 37788889999999999999999
Q ss_pred HHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC----------hHHH
Q 037713 90 SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL----------PNNA 159 (610)
Q Consensus 90 ~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 159 (610)
.+|+.... .-|+......+..++.+.+++..-.++--++-+. ++...+.+=++++.+...-. +.-|
T Consensus 98 ~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999987 5688888888899999988887766665555553 45666666667776655321 2345
Q ss_pred HHHHHhcCCCC-h-hh---HHHHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 160 RAVFDSIKLKN-S-VS---WTAMLSAYARSGRKKDAMEIFEQ-----APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 160 ~~~~~~m~~~~-~-~~---~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
.+.++.+.+.+ . .+ .-.-...+...|.+++|..++.. ...-+...-|--+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66666665443 1 11 11122334567889999988832 233344555566777888899999999999998
Q ss_pred HcC
Q 037713 230 REG 232 (610)
Q Consensus 230 ~~~ 232 (610)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 888
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0036 Score=65.51 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 037713 301 RKDVVSWTSIIVGTAQH-----GQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHV--------GLVGKGRKLFKSMI 366 (610)
Q Consensus 301 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 366 (610)
..|...|...+.+.... +....|..+|++..+. .|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34677777777765432 2256788888888775 4553 3333332222111 11222233322222
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 367 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21012223455555555555556666666666665 4556665666666666666666666666666666666654
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00017 Score=52.96 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc-chhHHHHHHHHHhh
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA-MWQHVSKVRKLMSV 469 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 469 (610)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999999999999999999999 79999998887654
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0012 Score=51.35 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3334444444444444444331 1122233444444444455555555555443 2222 2234444555555555555
Q ss_pred HHHHHHHHHhcCCC
Q 037713 425 MGTRVANHLLSLKP 438 (610)
Q Consensus 425 ~a~~~~~~~~~~~p 438 (610)
.|...+.+.++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555555444
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0033 Score=60.64 Aligned_cols=133 Identities=15% Similarity=0.221 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA-CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999988543 2233344433333 33356777799999999985 4566778889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEPDE----PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+..|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 323333 589999999999999999999999999888774
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.001 Score=61.74 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=69.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 426 (610)
..+.+++.+|+..|..+++ -.+-|...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566788888888888776 23345566666677888888888888776665 55665 56788888888888888888
Q ss_pred HHHHHHHhcCCCCCCc
Q 037713 427 TRVANHLLSLKPEDPS 442 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~ 442 (610)
++.|+++++++|++..
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 8888888888888763
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.43 E-value=0.0022 Score=64.21 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 425 (610)
.+...|++++|.+.|.++++. -+.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344556666666666666552 2334455666666666666776666666666 3444 34556666666677777777
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
|+..|+++++++|+++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777766555554444
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.0039 Score=55.37 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
....+..+...+...|++++|...|++..+....|+ ...+..+..++.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 455677778888888999999999988876543332 356777788888888888888888888763 2334566666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+...|...|+...+..-++.. ...+++|.++++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766554332221 112678889999999988875 5555555554443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00036 Score=50.44 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+...+...|++++|+..|+++++.+|+++..+..++.++...|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577788888888888888888888888888888888888888888888887754
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0014 Score=58.31 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
..|..+...|.+.|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666666666666655 22222 34566666677777888888888888887777777777777777
Q ss_pred hhhhcc
Q 037713 451 YASAAM 456 (610)
Q Consensus 451 ~~~~g~ 456 (610)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 776665
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0066 Score=58.80 Aligned_cols=153 Identities=9% Similarity=0.027 Sum_probs=109.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCCHHH------------
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY--ACSHVGLVGKGRKLFKSMIEDYGITPSLQH------------ 377 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 377 (610)
..+...|++++|...--...+.... +. +..+++ ++-..++.+.|...|++... ..|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~--~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NA--EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hh--HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3456678888888877666554211 22 222222 33356778888888877643 3444321
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 378 -YTCLLDLLSRSGHLDEAENLIKAM-PFE-----PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 378 -~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
+..=.....+.|++.+|.+.+.+. .+. |+...|........+.|+.++|+.-.+++++++|.-..+|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111223456889999999999887 444 4566777777778899999999999999999999888899999999
Q ss_pred hhhhcchhHHHHHHHHHhhC
Q 037713 451 YASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~ 470 (610)
+...++|++|.+-++...+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988876543
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.21 Score=52.00 Aligned_cols=246 Identities=9% Similarity=0.006 Sum_probs=117.7
Q ss_pred hHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCC--------hhhHHHHHHHHhccCCcHHHH
Q 037713 54 VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD--------HFVFASLVKACGSLGATRLGK 125 (610)
Q Consensus 54 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd--------~~~~~~ll~~~~~~~~~~~a~ 125 (610)
+++|.+..+.-|+ +..|..+...-.+.-.++-|...|-+.....+++.- ...-.+=+.++ -|.+++|+
T Consensus 679 ledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhh
Confidence 4555555554443 345666665555555555565555544332112110 00001111122 26677777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037713 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-----NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200 (610)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 200 (610)
+++-.+-+.. ..+.++.+.|++-...++++.-... -...|+.+...++....|++|.+.+..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 7766554433 2456677777777766666553322 1346667777777666777776666543211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
...+.++.+...+++-..+-+.+ |.|....-.+...+.+.|.-++|.+.|-. .+.+ .+-+
T Consensus 826 -----e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv 885 (1189)
T KOG2041|consen 826 -----ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAV 885 (1189)
T ss_pred -----HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHH
Confidence 12233333333333332222222 13444455555666666666655554422 1111 1233
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTS--------------IIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..+...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 44455555666655555544333322111 12334445555555555555543
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.0014 Score=58.11 Aligned_cols=93 Identities=10% Similarity=-0.098 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
....|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777888889999999988877 33333 347888888899999999999999999999998888888888
Q ss_pred HHhh-------hhcchhHHHHHHHH
Q 037713 449 NVYA-------SAAMWQHVSKVRKL 466 (610)
Q Consensus 449 ~~~~-------~~g~~~~a~~~~~~ 466 (610)
.+|. ..|++++|...++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8888 77787766655544
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.0011 Score=66.30 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=78.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 382 LDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44566889999999999988 5555 466777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 037713 460 VSKVRKLMSVM 470 (610)
Q Consensus 460 a~~~~~~m~~~ 470 (610)
|...++...+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00091 Score=51.25 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=41.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVK-PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 394 (610)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654321 2333344456666666666666666655 11 112 223333445566666666666
Q ss_pred HHHHHh
Q 037713 395 ENLIKA 400 (610)
Q Consensus 395 ~~~~~~ 400 (610)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.0034 Score=53.52 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=75.5
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 382 LDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.--+-..|++++|..+|+-+ -..| |..-|..|...|...+++++|+..|..+..++++||.++...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455789999999999887 2222 455677888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 037713 460 VSKVRKLMSV 469 (610)
Q Consensus 460 a~~~~~~m~~ 469 (610)
|.+.+....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.00096 Score=48.16 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888888 5556 456677777788888999999999999988888764
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.00082 Score=62.39 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
+.+.+++++|+..|.+. .+.| |++.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|+.+|...|++++|.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 56789999999999988 6676 466667777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 037713 463 VRKLMSV 469 (610)
Q Consensus 463 ~~~~m~~ 469 (610)
.|++..+
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 9877643
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.0094 Score=46.94 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCCHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNEVTFVGLIYACSHVG--------LVGKGRKLFKSMIEDYGITPSLQH 377 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 377 (610)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666677999999999999999999 899999999998877653 244567788888875 88888888
Q ss_pred HHHHHHHHHh
Q 037713 378 YTCLLDLLSR 387 (610)
Q Consensus 378 ~~~li~~~~~ 387 (610)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.16 E-value=0.058 Score=52.20 Aligned_cols=166 Identities=7% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCC--CC--CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVD--IV--DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~--~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 283 (610)
....|-..|++++|.+.|.+......+ .+ -...|......+.+ .+++.|...+.. .++.|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~---------------A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEK---------------AIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHH---------------HHHHH
Confidence 455666667777777766665332110 01 01122222222222 244444444433 34456
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhccCCHH
Q 037713 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH-GQAEETLALYDEMVS----AGVKPN--EVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~~g~~~ 356 (610)
.+.|++..|-+++.. +...|-.. |++++|++.|++..+ .| .+. ..++..+...+.+.|+++
T Consensus 105 ~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 105 REAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 666666666554443 44555555 677777777766543 22 111 234555666677777777
Q ss_pred HHHHHHHHhHHhcC----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 357 KGRKLFKSMIEDYG----ITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 357 ~a~~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+|.++|++.....- ...+. ..|-..+-++...|+...|.+.+++.
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777665311 11122 22333344555667777777777765
No 176
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.053 Score=49.50 Aligned_cols=138 Identities=11% Similarity=0.132 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh-----CCCCchhHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-----GYESCLFISN 277 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 277 (610)
..-+.++..+...|.+.-.+.++.+.++...+ .++...+.+.+.--+.|+.+.+...++.+.+. ++..+..+..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34566777778888898899999999887755 78888888888889999999999999977765 3334444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.....|.-.+++..|...|.+++.. |++.-|.-.-...-.|+..+|++..+.|.+. .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 5555677788999999999888753 5566666555556678999999999999886 44444433
No 177
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.47 Score=50.06 Aligned_cols=353 Identities=10% Similarity=0.083 Sum_probs=206.2
Q ss_pred HHcCCCchHHHHHHHHh--------HHCCCCCCChhhHHH-----HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH
Q 037713 79 YNQANLPQKTISIFSTM--------LALDKLQPDHFVFAS-----LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145 (610)
Q Consensus 79 ~~~~g~~~~A~~~~~~m--------~~~~~~~pd~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 145 (610)
+.+.-++++-+.+-+.. ..-| ++.+..-|.. +++-+...+.+..|.++-..+...-... ..++..
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~g-IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIG-IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccC-ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 34445555554444332 2334 5555555544 4555666778888888877764322222 567777
Q ss_pred HHHHHHhCCC---hHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------ChhhHHHHHHHH
Q 037713 146 LVDMYAKCGL---PNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR--------NLFLWTALVSGL 212 (610)
Q Consensus 146 li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~ 212 (610)
...-+.+..+ -+.+..+-+++.. ...++|.......-.+|+.+-|..+.+.=+.. +..-+...+.-.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 7777777643 2333444444544 46778888888888999999999998764322 222344555566
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 037713 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292 (610)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 292 (610)
.+.|+.+-...++..|.+.- +...+... ..+.-.|..+|.+..+..-. ..|-+.|-...+...+
T Consensus 557 ies~d~~Li~~Vllhlk~~~----~~s~l~~~------l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~ 620 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL----NRSSLFMT------LRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQAL 620 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH----HHHHHHHH------HHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhh
Confidence 67777777777666665432 11111111 11223344555554442211 1222333333333222
Q ss_pred HHHHHhc------CCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCH
Q 037713 293 KDIFGRM------RRKDVVSWTSIIVGTAQHGQ----------AEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 293 ~~~~~~~------~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
-.+--+- ..+-.........++++... ..+-+.+.+.+.. .|..-...|.+--+.-+...|+.
T Consensus 621 a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~ 700 (829)
T KOG2280|consen 621 ASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN 700 (829)
T ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch
Confidence 2111111 01111222223333443322 1122223333322 23334455666677778888999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
.+|.++-.+. . -||...|-.=+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|..++-+.-.
T Consensus 701 k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 701 KRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 9999886654 3 4788899889999999999999988888873 255677889999999999999998765422
Q ss_pred CCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 436 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
+.-...+|.+.|++.+|.+.--
T Consensus 773 --------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 --------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --------hHHHHHHHHHhccHHHHHHHHH
Confidence 2267889999999999987643
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0011 Score=49.13 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..+.+.++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888999999999999999988888888999999999999999888887654
No 179
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.37 Score=50.77 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++..+++++-+++-+.++ .+.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 33344455667888888888888888888888888888888888877776655543 245566678888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (610)
++|.+++.... |. . -.+.+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 88888876541 11 1 467788888888888765433
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0042 Score=58.14 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCchhHHHHHHHHHhcCCCCCCcchH
Q 037713 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKH---HRNTEMGTRVANHLLSLKPEDPSSYI 445 (610)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~ 445 (610)
-+-|...|..|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999887 4444 45566666666332 23567899999999999999999999
Q ss_pred hHHHHhhhhcchhHHHHHHHHHhhCCCccCC
Q 037713 446 LLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476 (610)
Q Consensus 446 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (610)
.|+..+...|++.+|...++.|.+.....+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999876555444
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.00048 Score=50.27 Aligned_cols=52 Identities=12% Similarity=0.299 Sum_probs=39.7
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|++++|++.++++++.+|+++.....++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888887776653
No 182
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.12 E-value=0.071 Score=52.59 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRRK-------DVVSWTSIIVGTAQ---HGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.|+-.|....+++...++++.+... ....--...-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888753 11222233445556 7888999999988776667778888877766
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH---HhC----C---CC
Q 037713 348 ACSH---------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE----AENLI---KAM----P---FE 404 (610)
Q Consensus 348 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~---~~m----~---~~ 404 (610)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|...+ ..++- ... + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5542 23467777777765 4456665443333334444443222 22221 111 1 22
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+-..+.+++.++.-.|+.++|.+.++++..+.|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4566677899999999999999999999999988754
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.12 E-value=0.012 Score=49.97 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
....-.+..-+.+.|++++|..+|+.+....+ -+...|-.+..+|...|++++|...+..+.... +.|+..+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33334445556666777777777776666552 455556666666666777777777777776665 345666666677
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 037713 282 MYAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~ 299 (610)
+|.+.|+.+.|++.|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777777777777766654
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0069 Score=53.93 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 037713 293 KDIFGRM--RRKDVVSWTSIIVGTAQ-----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG------------ 353 (610)
Q Consensus 293 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g------------ 353 (610)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677888888888775 4677777888899999999999999999999877532
Q ss_pred ----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 354 ----LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 354 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
+-+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 23567788888866 5888888888888888776654
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.0081 Score=57.93 Aligned_cols=124 Identities=12% Similarity=0.045 Sum_probs=66.0
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-CCChHHHHHHHHhcC---CCChhhHHHHHHHHH
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIK---LKNSVSWTAMLSAYA 182 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 182 (610)
+|..+++.+-+.+..+.|+.+|.++.+.+ ..+..+|-....+-.+ .++.+.|.++|+... ..+...|..-++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666665433 2222333333333222 344444666666554 235555556566666
Q ss_pred hcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 183 RSGRKKDAMEIFEQAPVR------NLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
+.++.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666654432 2246777777777777777777777777664
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.043 Score=53.14 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=64.5
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCHH
Q 037713 342 FVGLIYACSHV-GLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAMP---FE-----PDEP 408 (610)
Q Consensus 342 ~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~ 408 (610)
+..+...|... |++++|.+.|+...+-+..... ...+..+...+.+.|++++|.++|++.. .. .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455567777 8999999999888765432222 2556778888999999999999998871 11 1121
Q ss_pred -HHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 409 -TWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 409 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+...+-.+...||+..|...+++..+.+|.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1222333456678999999999999988875
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.06 E-value=0.39 Score=47.70 Aligned_cols=440 Identities=12% Similarity=0.086 Sum_probs=218.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC-----CchHHHHHHHhhcCCChHHHHHHHccCCCC-CcchHHHHHHHH--HcCCCch
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQY-----GPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAY--NQANLPQ 86 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~ 86 (610)
+.++..++..++..+.+..-... ....+.++++|.. .+++..........+. ....|-.+..++ -+.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 56788889999988876542211 2234677777764 3444444443333321 133466665554 4678888
Q ss_pred HHHHHHHHhHHC--CCCCC------------ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCC----CCChhHHHHHHH
Q 037713 87 KTISIFSTMLAL--DKLQP------------DHFVFASLVKACGSLGATRLGKQVHACFVLSPF----CDDDVVKSSLVD 148 (610)
Q Consensus 87 ~A~~~~~~m~~~--~~~~p------------d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~ 148 (610)
.|++.|...... + ..| |-+.=+.....+...|.+.+|+.+++++...=+ .-+..+||.++-
T Consensus 97 kal~~ls~w~~~~~~-~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 97 KALQALSVWKEQIKG-TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHhhhcc-cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 888888776654 2 222 111122334556678888888888877765433 367778887777
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC--CChHHHHHHHH
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS--RNEIDAFYSFI 226 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 226 (610)
++++.=-++ +-+.+...=..-|.-||-.|.+.=+.-++...=.-.++ ......++.-..-. .+..--++++.
T Consensus 176 mlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pe--eeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 176 MLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPE--EELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcH--HHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 766532111 11111111223445555555433211111100000000 00001111111000 11111122222
Q ss_pred HHHHcCCCCCCH-hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 037713 227 EMRREGVDIVDP-LVLSSIVGACANFAVLELGKQIHGLVIALGYES----CLFISNAIVDMYAKCSDIIAAKDIFGRMR- 300 (610)
Q Consensus 227 ~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 300 (610)
.-.+.-+. |+. .....+.....+ +.+++..+-+.+....+.+ =+.++..++....+.++...|.+.+.-+.
T Consensus 250 ~We~~yv~-p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENFYVH-PNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhhccC-CchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22333343 332 223333333333 3344444433333322111 12345556666667777777776665544
Q ss_pred -CCChhH-------HHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCH-HHH-HHHHHHHhccCC-HHHHHHHHHHh
Q 037713 301 -RKDVVS-------WTSIIVGTA----QHGQAEETLALYDEMVSAGVKPNE-VTF-VGLIYACSHVGL-VGKGRKLFKSM 365 (610)
Q Consensus 301 -~~~~~~-------~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~-~t~-~~ll~a~~~~g~-~~~a~~~~~~~ 365 (610)
+|+... -.++-+..+ ..-+...=+.+|+......+.-.. +.| ..-..-+-+.|. -++|.++++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 232210 111111122 112233445555555544332111 111 111122334444 67788887777
Q ss_pred HHhcCCCCCHHHHHHHHH----HHHhc---CC---HHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCchhHHHHH
Q 037713 366 IEDYGITPSLQHYTCLLD----LLSRS---GH---LDEAENLIKAMPFEP----DEPTWAALLSA--CKHHRNTEMGTRV 429 (610)
Q Consensus 366 ~~~~~~~~~~~~~~~li~----~~~~~---g~---~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~ 429 (610)
.+- -+-|...-|.+.. .|..+ .. +-+-+.++++.++.| +...-|.|..| +..+|++.++.-.
T Consensus 407 l~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 552 1223333332221 22211 11 112234455556655 45566777777 6789999999999
Q ss_pred HHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 430 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
-..+.+..| ++.+|..++-.+....++++|..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 78999999999999999999999988763
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.04 E-value=0.0071 Score=47.61 Aligned_cols=80 Identities=6% Similarity=-0.000 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHCCCC-CCChhhHHHHHHHHhccC--------CcHHHHHHHHHHHhcCCCCChhH
Q 037713 72 WASILTAYNQANLPQKTISIFSTMLALDKL-QPDHFVFASLVKACGSLG--------ATRLGKQVHACFVLSPFCDDDVV 142 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~pd~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 142 (610)
-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3445666667799999999999999999 8 899999999999877543 23356788999999999999999
Q ss_pred HHHHHHHHHh
Q 037713 143 KSSLVDMYAK 152 (610)
Q Consensus 143 ~~~li~~~~~ 152 (610)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.04 E-value=0.014 Score=51.52 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 381 (610)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 45566677777778888888888888776532322 346777777888888888888888777652 22233455555
Q ss_pred HHHHH
Q 037713 382 LDLLS 386 (610)
Q Consensus 382 i~~~~ 386 (610)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.051 Score=46.93 Aligned_cols=132 Identities=9% Similarity=0.089 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 037713 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP---DEPTW 410 (610)
Q Consensus 335 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 410 (610)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++.+|...+++. ...| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888999999999999999988762 34556778888888888999999999988887 1112 22334
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
..+...+...|.++.|+..|+.++.--|. +..-......+.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45667799999999999999999988874 5666677888999998888776554443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.02 Score=49.38 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=91.6
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC-
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE- 439 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 439 (610)
+..+.....|++..-..|..++.+.|+..||...|++. .+.-|......+..+....+++..|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33344466788888889999999999999999999988 45567888888999999999999999999999998875
Q ss_pred -CCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 440 -DPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 440 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.|.....+++.|...|++++|+..++...+
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 567788999999999999999999988764
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.99 E-value=0.0097 Score=59.82 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR----KDVVSWTS 309 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~ 309 (610)
.++..+..++..+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 45555555666666655666665555554443 1111223334566666666666666655554332 45666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666655555555555555555544443
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.97 E-value=0.0019 Score=47.21 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-chhHHHHHHHHHhcCCC
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHR-NTEMGTRVANHLLSLKP 438 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 438 (610)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777778888888888887776 4445 3566777777788888 68888888888888776
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.97 E-value=0.011 Score=59.46 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=96.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-K-----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
+.+.+......+++......+++.+..++.+... | -..|..++|..|...|..++++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445555666677777777788889888887764 2 234567999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
|+.|+..+.+.|++..|.++...|+.. ....+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999988875 5666666666655555555
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.96 E-value=0.0061 Score=58.90 Aligned_cols=256 Identities=13% Similarity=0.044 Sum_probs=147.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHh----HHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPL----VLSSIVGACANFAVLELGKQIHGLVIAL----GYE-SCLFISNAIVD 281 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~ 281 (610)
-+++.|+....+.+|+..++.|- .|-. .|+.+-.+|.-.+++++|.++|..=+.. |-. -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 35666777777777777777663 2333 3444555666667777777766432211 100 01111122333
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHH--
Q 037713 282 MYAKCSDIIAAKDIFGRMRR-------K--DVVSWTSIIVGTAQHGQ--------------------AEETLALYDEM-- 330 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m-- 330 (610)
.+--.|.+++|.-.-.+-.. + ...++..+...|...|+ .+.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33344555555433222110 0 12233334444433321 23344444332
Q ss_pred --HHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 037713 331 --VSAGVK-PNEVTFVGLIYACSHVGLVGKGRKLFKSM---IEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-- 401 (610)
Q Consensus 331 --~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-- 401 (610)
...|-. .....|..|.+.|.-.|+++.|+..++.- .+.+|-... ...+..|..++.-.|+++.|.+.++..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111111 11245666777777788999998776532 233443332 356788888888899999999988765
Q ss_pred -----CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc----CC--CCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 402 -----PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLS----LK--PEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 402 -----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
+. .....+..+|..+|.-..+++.|+.++.+=+. ++ .....++..|+++|...|..+.|..+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 22456677888899888999999998876542 22 2235688899999999999999988776654
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.96 E-value=0.31 Score=45.80 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 346 IYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 346 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
..-|.+.|.+..|..-++.+++++.-.|. .+....++.+|.+.|..++|.+..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34455555555555555555554432222 234444555555555555555443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0043 Score=45.13 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAAL 413 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 413 (610)
..|++++|.++|+.+.+. .+-+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345555666666655542 2234455555566666666666666666655 334554444333
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.90 E-value=0.031 Score=58.65 Aligned_cols=135 Identities=12% Similarity=0.098 Sum_probs=97.6
Q ss_pred cCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHH
Q 037713 333 AGVKPNEVTFVGLIYACSHV-----GLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRS--------GHLDEAENLI 398 (610)
Q Consensus 333 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~ 398 (610)
.+.+.|...|...+++.... +..+.|..+|++..+ ..|+ ...|..+..+|... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34566788888888875543 237789999999987 3565 35555544444322 2234555555
Q ss_pred HhC---C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 399 KAM---P-FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 399 ~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
++. + ...+...|..+.-.....|++++|...++++++++| +..+|..++.+|...|+.++|...++......
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 543 1 233556777776667778999999999999999999 47899999999999999999999998876443
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.89 E-value=0.00043 Score=42.19 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=30.2
Q ss_pred HHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 430 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.0063 Score=54.16 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=79.0
Q ss_pred HHHHHHccC--CCCCcchHHHHHHHHHcC-----CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC---------
Q 037713 56 YAHHLLEEM--PQRDHVSWASILTAYNQA-----NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG--------- 119 (610)
Q Consensus 56 ~A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~--------- 119 (610)
.-...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-| +.-|..+|+.||+.+=+..
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 344566665 467888888888888754 55666667788899988 9999999999998875421
Q ss_pred -------CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 037713 120 -------ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156 (610)
Q Consensus 120 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 156 (610)
+-+-|..++++|...|+-||..++..|++.+++.+..
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 4467899999999999999999999999999877653
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.51 Score=45.95 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=158.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHH----HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVL----SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 289 (610)
-.|++++|.+-|+.|.. |+.|- ..+.-...+.|+.+.++++-+...... +.-.-.+.++++..+..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35777777777777763 22222 223333356777788877777665543 22245677888889999999
Q ss_pred HHHHHHHHhcCC-----CChh--HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHH
Q 037713 290 IAAKDIFGRMRR-----KDVV--SWTSIIVGTAQ---HGQAEETLALYDEMVSAGVKPNEVT-FVGLIYACSHVGLVGKG 358 (610)
Q Consensus 290 ~~A~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 358 (610)
+.|+++.+.-.. +|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+- -..-..++.+.|++.++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 999999887653 4432 22333333222 2345556555544443 5666443 23345788999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHhCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE----NLIKAMPFEPD-EPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
-.+++.+-+ ..|.+.++...+ +.+.|+..... +-++. ++|| ......+..+-...|++..|..-.+.+
T Consensus 283 ~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999854 567776655444 34556533221 12233 3454 566667778888899999999999999
Q ss_pred hcCCCCCCcchHhHHHHhhhh-cchhHHHHHHHHHhhCCCccCCccc
Q 037713 434 LSLKPEDPSSYILLSNVYASA-AMWQHVSKVRKLMSVMEVKKEPGYS 479 (610)
Q Consensus 434 ~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~s 479 (610)
....|.. ..|.+|.++-... |+-.++...+.+-.. -..+|.|+
T Consensus 356 ~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~--APrdPaW~ 399 (531)
T COG3898 356 AREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK--APRDPAWT 399 (531)
T ss_pred hhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc--CCCCCccc
Confidence 9999964 7899999987554 888888777665543 23455543
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.82 E-value=0.24 Score=46.58 Aligned_cols=172 Identities=11% Similarity=0.013 Sum_probs=93.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC---hhh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc--
Q 037713 179 SAYARSGRKKDAMEIFEQAPVRN---LFL---WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN-- 250 (610)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~-- 250 (610)
..+.+.|++++|.+.|+++.... ... .-.+..+|.+.+++++|...|++..+..+..|+. -+...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 33344556666666665554321 111 1234566777788888888888877765442332 22222222111
Q ss_pred c---------------ccH---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 037713 251 F---------------AVL---ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312 (610)
Q Consensus 251 ~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 312 (610)
. .+. ..|...+ ..+++-|-...-..+|..-+..+...=...--.+..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~---------------~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDF---------------SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHH---------------HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1122222 233333444444445544444433221111123455
Q ss_pred HHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 313 GTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
-|.+.|.+..|..-|+.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 688889999999999998873 233345667778889999999999988776553
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.81 E-value=0.037 Score=45.27 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=62.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLS 386 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 386 (610)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888876654 34566777888888888888888888876432111 2223333445667
Q ss_pred hcCCHHHHHHHHHh
Q 037713 387 RSGHLDEAENLIKA 400 (610)
Q Consensus 387 ~~g~~~~A~~~~~~ 400 (610)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888876644
No 204
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.79 E-value=0.64 Score=46.11 Aligned_cols=389 Identities=10% Similarity=0.030 Sum_probs=215.1
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCC---cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD---HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l 111 (610)
+.|...|-.||.-|...|..++.++++++|..|- ..+|..-|++=....++.....+|.+.+... . +...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-L--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-c--cHhHHHHH
Confidence 4577889999999999999999999999999874 4468888888888889999999999988743 3 44455555
Q ss_pred HHHHhccCCcHH------HHHHHHHHHh-cCCCCC-hhHHHHHHHHHH---hCCC------hHHHHHHHHhcCCC-----
Q 037713 112 VKACGSLGATRL------GKQVHACFVL-SPFCDD-DVVKSSLVDMYA---KCGL------PNNARAVFDSIKLK----- 169 (610)
Q Consensus 112 l~~~~~~~~~~~------a~~~~~~~~~-~g~~~~-~~~~~~li~~~~---~~g~------~~~A~~~~~~m~~~----- 169 (610)
+.-..+..+.-. -.+.++..+. .++.|- ...|+..++..- ..|. +|..++.+.++..-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 554444332221 1233333333 344443 334555544322 1233 34445555555421
Q ss_pred -----ChhhHHHHHHHHHh-------cCCHHHHHHHHhhCC-------------------------------------CC
Q 037713 170 -----NSVSWTAMLSAYAR-------SGRKKDAMEIFEQAP-------------------------------------VR 200 (610)
Q Consensus 170 -----~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~-------------------------------------~~ 200 (610)
|-..|..=++.... .--+-.|.+.+++.. .+
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 11111111110000 000111111111110 00
Q ss_pred -----Ch------hhHHHHH--------------HHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cH
Q 037713 201 -----NL------FLWTALV--------------SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VL 254 (610)
Q Consensus 201 -----~~------~~~~~li--------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~ 254 (610)
+. ..++-.+ .-+...++-+.|+...+.-.... |. ....++-|-... +-
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s---ps---L~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS---PS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC---Cc---hheeHHHHHhhcccH
Confidence 00 1112111 11344566777776655432221 33 333333333222 22
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAK---CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
+.....++...+. ..---+.++.=+. -|+.+...+++-.-..+=..+|...+..-.+..-.+.|..+|-+..
T Consensus 350 e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 350 EAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred HHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2222222222110 0000000000000 2334333333322223456778888888888888888899999988
Q ss_pred HcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--
Q 037713 332 SAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPD-- 406 (610)
Q Consensus 332 ~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~-- 406 (610)
+.| +.++...+++.+.-++ .|+...|..+|+.-... ++.+..--+-.+.-+.+.++-+.|..+|+.. .+..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 888 6677888888887554 57788888888877663 2233333345566677888888899888865 23333
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
...|..++..-..-|+...+..+-+++.++-|..
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5678888888888899988888888888888864
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.70 E-value=0.056 Score=44.20 Aligned_cols=107 Identities=8% Similarity=-0.073 Sum_probs=58.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYE--SCLFISNAIVDMYA 284 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~ 284 (610)
+..++-..|+.++|+.+|++....|...++ ...+..+.+.+...|++++|..+++........ .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667778888888888888887754121 234445556666677777777777666554211 01222222333445
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 314 (610)
..|+.++|.+.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555444433333343333333
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.64 Score=45.64 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=53.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHh
Q 037713 312 VGTAQHGQAEETLALYDEMVSA---GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSR 387 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 387 (610)
.-..++|++..|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.--+...+ +.|. +..|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHH
Confidence 3445678888888888777653 3455666677777777778888888777666543 2222 1222222334455
Q ss_pred cCCHHHHHHHHHhC
Q 037713 388 SGHLDEAENLIKAM 401 (610)
Q Consensus 388 ~g~~~~A~~~~~~m 401 (610)
.+++++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777777665
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.57 E-value=0.032 Score=46.13 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 334 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567777788888888888888888888888777777777777777776643
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.57 E-value=0.012 Score=55.66 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=38.0
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCch
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNT 423 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~ 423 (610)
.+.|++++|...|+.+.+.+.-.+- ...+..+...|...|++++|...|+.+ ...|+ ...+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555555543211110 123344444445555555555544444 11111 22222333334444455
Q ss_pred hHHHHHHHHHhcCCCC
Q 037713 424 EMGTRVANHLLSLKPE 439 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~ 439 (610)
+.|..+++++++..|+
T Consensus 234 ~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 234 AKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHCcC
Confidence 5555555555444444
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.48 E-value=0.0036 Score=40.91 Aligned_cols=42 Identities=26% Similarity=0.540 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
.+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999888777654
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.47 E-value=0.052 Score=51.51 Aligned_cols=93 Identities=12% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE----VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCL 381 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 381 (610)
|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.+.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555553 2221 23444555555555666666555555553322211 2333334
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 037713 382 LDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m 401 (610)
...|...|+.++|..++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.45 E-value=0.02 Score=55.50 Aligned_cols=276 Identities=10% Similarity=0.012 Sum_probs=145.5
Q ss_pred HHHcCCCchHHHHHHHHhHHCCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHH--hc--CCC-CChhHHHHHHH
Q 037713 78 AYNQANLPQKTISIFSTMLALDKLQPDHF----VFASLVKACGSLGATRLGKQVHACFV--LS--PFC-DDDVVKSSLVD 148 (610)
Q Consensus 78 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~ 148 (610)
-+++.|+....+.+|+..++.| .-|.. .|..|.++|.-.+++++|.+.|..=+ .. |-. -.......|-+
T Consensus 26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3688899999999999888876 33433 35556677777778888888765321 10 100 01112222334
Q ss_pred HHHhCCChHHHHHHHHhcC-------CC--ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCCh
Q 037713 149 MYAKCGLPNNARAVFDSIK-------LK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNE 218 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 218 (610)
.+--.|.+++|...-.+-. .+ ....+..+...|...|+--. .+.| +.-.++.=+. ..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-------~~~pee~g~f~~ev~-----~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-------LEAPEEKGAFNAEVT-----SAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-------CCChhhcccccHHHH-----HHH
Confidence 4444566666654322111 00 11122222333322221000 0000 0000000000 011
Q ss_pred HHHHHHHHHH----HHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCH
Q 037713 219 IDAFYSFIEM----RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL----GYE-SCLFISNAIVDMYAKCSDI 289 (610)
Q Consensus 219 ~~A~~~~~~m----~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~ 289 (610)
+.|.++|.+= .+.|-.......|..+-..|.-.|+++.+...|+.-... |-. .....+..|.+++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 2333333321 111211122344555556666678888888887765432 321 2234667788888888888
Q ss_pred HHHHHHHHhcC-------CC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhccCCH
Q 037713 290 IAAKDIFGRMR-------RK--DVVSWTSIIVGTAQHGQAEETLALYDEMVS----AG-VKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 290 ~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~ 355 (610)
+.|.+.|+... .+ ...+..+|...|.-..++++|+.++.+-.. .+ ..-....+-+|..++...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888877543 22 234566677777777788888887765322 11 122456677888888888888
Q ss_pred HHHHHHHHHhHH
Q 037713 356 GKGRKLFKSMIE 367 (610)
Q Consensus 356 ~~a~~~~~~~~~ 367 (610)
++|..+.+...+
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888877655443
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.34 Score=44.51 Aligned_cols=133 Identities=9% Similarity=0.004 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----H
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT-----C 380 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 380 (610)
.-+.++..+.-+|.+.-.+.++.+.++...+.+......|.+.-.+.|+.+.|..+|+...+.. -..|....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhh
Confidence 3455566666666777777777777776555566666667777777777777777777655431 122222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 381 LLDLLSRSGHLDEAENLIKAMPF-EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
....|.-+.++.+|...+.+.+. .| |+...|.-.-...-.|+...|.+..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 22334445556666666655521 11 2222232222233345566666666666666654
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.013 Score=58.45 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE----PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567777777788888888888887775 566663 34777777788888888888888887776321 221111
Q ss_pred H--HhhhhcchhHHHHHHHHHhhCCCc
Q 037713 449 N--VYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 449 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
. .+......++..++++..++-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112223344566666666665553
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.25 E-value=1.4 Score=43.78 Aligned_cols=405 Identities=10% Similarity=0.052 Sum_probs=221.6
Q ss_pred HHHHccCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 037713 58 HHLLEEMPQ-R-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135 (610)
Q Consensus 58 ~~~f~~m~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 135 (610)
+++=+++.+ | |..+|-.||.-|...+..++..+++++|..- .+-=...|..-+++=....++...+.+|.+.++..
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 366666663 3 8889999999999999999999999999652 22234556666666666688999999999998876
Q ss_pred CCCChhHHHHHHHHHHhCCC---------hHHHHHHHHhc--CC-CChhhHHHHHHHH---------HhcCCHHHHHHHH
Q 037713 136 FCDDDVVKSSLVDMYAKCGL---------PNNARAVFDSI--KL-KNSVSWTAMLSAY---------ARSGRKKDAMEIF 194 (610)
Q Consensus 136 ~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m--~~-~~~~~~~~li~~~---------~~~g~~~~A~~~~ 194 (610)
+. ...|...++---+... +-+|-++.-.. .+ .....|+..+.-+ -++.+++..++.+
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 54 4555555543333221 12222221111 12 2445566554432 2344555666666
Q ss_pred hhCCCC---Ch-hhHH------HHHHH-----HHh--CCChHHHHHHHHHHHH--cCCC---CCCHhHHHHHHH------
Q 037713 195 EQAPVR---NL-FLWT------ALVSG-----LVQ--SRNEIDAFYSFIEMRR--EGVD---IVDPLVLSSIVG------ 246 (610)
Q Consensus 195 ~~~~~~---~~-~~~~------~li~~-----~~~--~g~~~~A~~~~~~m~~--~~~~---~p~~~t~~~ll~------ 246 (610)
.++... |. ..|+ .=+.. ++. .--+..|...+++... .|.. |.+..|++-+..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 665532 11 1121 11111 111 1124456666666543 2332 123333333221
Q ss_pred -----HHhcc------cc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--------
Q 037713 247 -----ACANF------AV-LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDV-------- 304 (610)
Q Consensus 247 -----~~~~~------~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-------- 304 (610)
--... +- .....-+|+++... +.-...+|----..+...++-+.|++....-.+ |..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~y 343 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYY 343 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHH
Confidence 10000 00 11122233333332 122233443333444556677777776655432 210
Q ss_pred -------h---HHHHHHHHHHh---cCChHHHHHH------HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 305 -------V---SWTSIIVGTAQ---HGQAEETLAL------YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 305 -------~---~~~~li~~~~~---~g~~~~A~~l------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
. +|..++..+.+ .|+.+.+... ..+..-....--...|...+++-.+..-++.|+.+|-+.
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 12222222221 1111111111 111110001112356778888888888999999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCchhHHHHHHHHHhcCCCC--C
Q 037713 366 IEDYG-ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPT-WAALLSACKHHRNTEMGTRVANHLLSLKPE--D 440 (610)
Q Consensus 366 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~ 440 (610)
.+. + +.+++.++++++.-++ .|+..-|..+|+-- .--||... -+..+.-+..-++-+.|..+|+..++.-.. -
T Consensus 424 rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 424 RKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred hcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 886 6 7788999999998775 68888899999764 33455444 345666677788889999999866532211 1
Q ss_pred CcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 441 PSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|..++.--..-|+...+..+-+.|.+
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 35677777776777777766666555543
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.23 E-value=0.013 Score=43.19 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=47.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 383 DLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
..|.+.+++++|.++++.+ ...|+ ...|......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888887 45554 55566677778888999999999999998888765443
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.14 E-value=0.49 Score=48.98 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=123.3
Q ss_pred HHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037713 206 TALVSGLVQSRN--EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283 (610)
Q Consensus 206 ~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 283 (610)
+..-.+|.+..+ +-+-+.-+++|++.|-. |+.... ...|+-.|.+.+|.++|.+ .|.+ |.-+++|
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~-P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGET-PNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCC-chHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 333344544333 44556667788888876 776543 4556677888888777753 2322 3345556
Q ss_pred HhcCCHHHHHHHHHhcCC---------C-----ChhHHHHHHHHHHhcCChHHHHHHHHH------HHHcCCC---CCHH
Q 037713 284 AKCSDIIAAKDIFGRMRR---------K-----DVVSWTSIIVGTAQHGQAEETLALYDE------MVSAGVK---PNEV 340 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~---------~-----~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~---p~~~ 340 (610)
.....++.|.++...-.. + |+.-=.+....+...|+.++|..+.-+ +.+-+-+ .+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 555556666555543321 0 111011223334455666666554321 1221212 2445
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH----------
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-FEPDEPT---------- 409 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~---------- 409 (610)
+...+..-+-+...+..|-++|.+|-. ..+++++....+++.+|..+-++.| ..||...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 565566666677788889999988843 2468889999999999999999883 4454322
Q ss_pred -HHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 410 -WAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 410 -~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|.---.+|.+.|+-.+|.++++++.
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 2233456888899999999988875
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.04 E-value=0.085 Score=43.60 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPDEPTWAALLSACK 418 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 418 (610)
...|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44566667777777777777777777666555 45545666766666543
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.3 Score=46.09 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhC-CCCCCHHH-HH
Q 037713 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS---GHLDEAENLIKAM-PFEPDEPT-WA 411 (610)
Q Consensus 337 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p~~~~-~~ 411 (610)
-|...|..|..+|...|+.+.|...|....+- -.++...+..+..++... ....++.++|+++ ...|+... ..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 36778888888888888888888888888663 334556666666655432 2355778888888 55665444 44
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
-|..++...|++.+|...++.|++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 445558889999999999999998887663
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.96 E-value=0.26 Score=45.00 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLL 385 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~ 385 (610)
+..++.-|-......+|...+..+.+. .-.. -..+..-|.+.|.+..|..-++.+++.+.-.+.. .....|+.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 334455555555556666555555432 0111 1235667888888888888888888865433332 5567777888
Q ss_pred HhcCCHHHHH
Q 037713 386 SRSGHLDEAE 395 (610)
Q Consensus 386 ~~~g~~~~A~ 395 (610)
.+.|..+.|.
T Consensus 189 ~~l~~~~~a~ 198 (203)
T PF13525_consen 189 YKLGLKQAAD 198 (203)
T ss_dssp HHTT-HHHHH
T ss_pred HHhCChHHHH
Confidence 8888877543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=1.3 Score=40.43 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACK 418 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 418 (610)
.++.-|-.+.-..+|...+..+.+.. ...--.+.+.|.+.|.+..|..-++.+ ..-|+ ......++.++.
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 34444444555666666655554421 223334677788888888888777766 11233 334566777788
Q ss_pred hcCchhHHHH
Q 037713 419 HHRNTEMGTR 428 (610)
Q Consensus 419 ~~g~~~~a~~ 428 (610)
+.|..+.+..
T Consensus 190 ~l~~~~~a~~ 199 (203)
T PF13525_consen 190 KLGLKQAADT 199 (203)
T ss_dssp HTT-HHHHHH
T ss_pred HhCChHHHHH
Confidence 8887775443
No 221
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.86 E-value=1.4 Score=49.18 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHH
Q 037713 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 263 (610)
.+++++|+.-+.++. ...|.-.+..--+.|.+++|+.++. |+...+..+..+|+..
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~---------~~~e~~k~i~~~ya~h------------ 948 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYK---------PDSEKQKVIYEAYADH------------ 948 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheec---------cCHHHHHHHHHHHHHH------------
Confidence 355666665555543 2234444455555666677766653 7777777666665431
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--
Q 037713 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT-- 341 (610)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-- 341 (610)
+.+. ..++--.-+|.++|+.++|.+.| ...|+|.+|+.+..+|... -|...
T Consensus 949 L~~~------~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~---~de~~~~ 1001 (1265)
T KOG1920|consen 949 LREE------LMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEG---KDELVIL 1001 (1265)
T ss_pred HHHh------ccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCC---HHHHHHH
Confidence 1111 11223345677888888885544 4478888888888777432 12221
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
--.|..-+...++.-+|-++..+...+ | .--+..|++...+++|..+....
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 235666777778887777776665331 2 23455667777788887776655
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=3 Score=43.95 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=72.8
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHH----------------HHhHHCCCCCCChhhHHHHHHHH
Q 037713 52 DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF----------------STMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 52 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----------------~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
|++++|.+++-.|.++|.. |..+.+-|++-...+++ +.|-+ .-.+...|......|
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~---~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE---TFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 7788888888888877653 22233333333333332 22211 111223344444444
Q ss_pred hccCCcHHHHHH------HHHHH--hcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 116 GSLGATRLGKQV------HACFV--LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 116 ~~~~~~~~a~~~------~~~~~--~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
...|+.+.-.+. |+.+. ...++.|....-.+.+++...|.-++|.+.|-+...|. +.+..|...++|
T Consensus 820 ~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 820 SYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQW 894 (1189)
T ss_pred HhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHH
Confidence 444444322221 11111 12346666677777778888888887777776655443 233455566677
Q ss_pred HHHHHHHhhCCCCCh
Q 037713 188 KDAMEIFEQAPVRNL 202 (610)
Q Consensus 188 ~~A~~~~~~~~~~~~ 202 (610)
.+|.++-.+..-|.+
T Consensus 895 ~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhccchhH
Confidence 777777666554433
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.83 E-value=0.28 Score=39.94 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=84.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
-.|..++..++..+...+ .+..-+|.++--...+-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 356677777777776654 24455555555444444555555555555332211 2355555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 396 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.-+-.++ .+......-+.+...+|.-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++...-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555543 245556677888899999999999999988666567889999999999999999999999999888875
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.80 E-value=0.015 Score=43.70 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHH
Q 037713 410 WAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
+..+...+...|++++|++.+++.
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444443
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.73 E-value=0.1 Score=48.21 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---------
Q 037713 291 AAKDIFGRMR--RKDVVSWTSIIVGTAQH-----GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL--------- 354 (610)
Q Consensus 291 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 354 (610)
..++.|.... ++|-.+|-+++..+..+ +..+=....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 67888999999888764 5567777788999999999999999999998776542
Q ss_pred -------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 037713 355 -------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391 (610)
Q Consensus 355 -------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 391 (610)
-+-++.++++|.. +|+.||.++-..|++++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 2347889999966 69999999999999999998864
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.15 Score=49.88 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..+++.|...|.+.+.+..|++...+.++++|+|..+...-+.+|...|.++.|...|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345677777888999999999999999999999999999999999999999999999998864
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.45 E-value=1.9 Score=42.78 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=39.6
Q ss_pred HhhcCCChHHHHHHHccCCCC---Ccc----hHHHHHHHHHc---CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHH
Q 037713 47 AYGKCDLVQYAHHLLEEMPQR---DHV----SWASILTAYNQ---ANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 47 ~~~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
.|-...+++...++.+.++.. +.. .--...-++.+ .|+.++|++++..+.... ..++..+|..+.+.+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHHHHH
Confidence 466677777777777777643 111 11122234445 677777777777754444 456666666665554
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.44 E-value=2.9 Score=40.97 Aligned_cols=277 Identities=14% Similarity=0.074 Sum_probs=147.0
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH--HHhCCChHHHHHHHHhcCCCChh---hHHHHHHHHHhcCCHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM--YAKCGLPNNARAVFDSIKLKNSV---SWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~ 191 (610)
..|+-..|+++-.+..+. +..|....--|+.+ -.-.|+.+.|.+-|+.|...-.. -...|.-.--+.|..+.|.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 446666776665554322 23333333333332 23468888888888888643211 1222222234567777777
Q ss_pred HHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH--HHHHHHHHhc---cccHHHHHHHHHH
Q 037713 192 EIFEQAPVR---NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV--LSSIVGACAN---FAVLELGKQIHGL 263 (610)
Q Consensus 192 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~~~~~---~~~~~~a~~~~~~ 263 (610)
..-++.-.. -.-.|.+.+...+..|+|+.|+++++.-+...+..++..- -..++.+-+. ..+...++..-.+
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 666654322 2356778888999999999999999887765433244432 2233332221 1234445554444
Q ss_pred HHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCC-HH
Q 037713 264 VIALGYESCLFI-SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPN-EV 340 (610)
Q Consensus 264 ~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~-~~ 340 (610)
..+. .|+..- .-.-..+|.+.|++.++-.+++.+-+..+..--..+..+++.|+ .++.-+++... ..++|| ..
T Consensus 255 a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 255 ANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred Hhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 4443 333221 11223566777777777777777754322222222223344444 33333333322 123444 44
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS-GHLDEAENLIKAM 401 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m 401 (610)
+...+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++...+-+.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 55556666666777766665554443 3466666676666654433 6666666666555
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.33 E-value=0.048 Score=46.85 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666778889999999999999999999999999999999999999999999998875
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.24 E-value=0.11 Score=52.10 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL----QHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+...++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999999999876 45663 35888999999999999999999887
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.17 E-value=0.023 Score=42.57 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcC----CCC---CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSL----KPE---DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.++...
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777788888888888888877743 222 24578899999999999999999988754
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.15 E-value=1.6 Score=45.37 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCC--chHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037713 72 WASILTAYNQANL--PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149 (610)
Q Consensus 72 ~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 149 (610)
++..=.+|.+-.+ +-+-+.-+++|+++| ..|+..... ..|+-.|.+.+|-++|.+ .|. -|..+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iLlA---~~~Ay~gKF~EAAklFk~---~G~------enRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLLLA---DVFAYQGKFHEAAKLFKR---SGH------ENRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHHHH---HHHHhhhhHHHHHHHHHH---cCc------hhhHHHH
Confidence 3344445544333 233444466777777 668765433 345566778888777753 342 1345566
Q ss_pred HHhCCChHHHHHHHHhcCCC--------------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 037713 150 YAKCGLPNNARAVFDSIKLK--------------NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215 (610)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 215 (610)
|.....+|.|.+++..-... |+.--.+....+...|+.++|..+. ..+
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~ 729 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDH 729 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcc
Confidence 66666666666665432210 0000011111222223333322221 122
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (610)
|-.+-+.++-+++-. .+..+...+..-+-+...+..|.++|..+-.. .+++++....+++++|..+
T Consensus 730 gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred cHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence 222222222222211 34455555555566666777777777766433 3577788888888888888
Q ss_pred HHhcCC
Q 037713 296 FGRMRR 301 (610)
Q Consensus 296 ~~~~~~ 301 (610)
-++.++
T Consensus 796 Ae~hPe 801 (1081)
T KOG1538|consen 796 AEKHPE 801 (1081)
T ss_pred hhhCcc
Confidence 888875
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.12 E-value=2.6 Score=38.56 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMR-----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY- 347 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 347 (610)
.........+...+++..+...+.... ......+..+...+...++...+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344444455555555555555554432 12334444444555555555566666665554332221 11111112
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCc
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGI--TPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD--EPTWAALLSACKHHRN 422 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~ 422 (610)
++...|+++.+...+...... .- ......+......+...++.++|...+.+. ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666655331 11 112233333333355566666666666555 22232 4555555555666666
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+.+...+.......|.....+..+...+...|.++++...+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666533444455555555555666665555443
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.38 Score=47.25 Aligned_cols=137 Identities=12% Similarity=-0.012 Sum_probs=95.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
...|.+.|++..|...|++.... |. +...-+.++..... . .-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 45677777888887777776542 00 01111112222111 1 123467778888999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHH-HHHHHHH
Q 037713 391 LDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV-SKVRKLM 467 (610)
Q Consensus 391 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 467 (610)
+.+|++.-++. .. .+|.....-=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+...+++. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 33 346666767778899999999999999999999999988888888887777666654 6777777
Q ss_pred hh
Q 037713 468 SV 469 (610)
Q Consensus 468 ~~ 469 (610)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 235
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.02 E-value=5.2 Score=41.59 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=123.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLI 346 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll 346 (610)
+..+|...++.-.+.|+.+...-+|++..-|- ...|--.+.-....|+.+-|..++..-.+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45678888888889999999999999887652 234555555455558888888777766553333 3333333333
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAE---NLIKAM-PFEPDEPTWAALLSA----- 416 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~----- 416 (610)
+-..|+++.|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.--
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 44578999999999999885 3 543 44444566777899999888 555544 222233233222222
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 455788999999999999999999888988888876665
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.87 E-value=0.17 Score=46.81 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=81.8
Q ss_pred hHHHHHHHccCC--CCCcchHHHHHHHHHcC-----CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC-------
Q 037713 54 VQYAHHLLEEMP--QRDHVSWASILTAYNQA-----NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG------- 119 (610)
Q Consensus 54 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~------- 119 (610)
+-..++.|+..+ ++|-.+|-+++..|... +..+=....++.|.+.| +.-|..+|..||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHH
Confidence 344667788777 77899999999888654 45566667788999999 9999999999999875532
Q ss_pred ---------CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 037713 120 ---------ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156 (610)
Q Consensus 120 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 156 (610)
+-+-+..++++|...|+.||-.+-..|++++.+.+-.
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999999887764
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.69 E-value=0.15 Score=43.64 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCCHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE----DYGITPSLQH 377 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 377 (610)
....++..+...|++++|+.+.+.+.... +-|...|..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555556666666666666666542 22555666666666666666666666655432 2455555544
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.69 E-value=3.4 Score=37.77 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=130.5
Q ss_pred HhHHHHHHHHHhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHH-
Q 037713 238 PLVLSSIVGACANFAVLELGKQIHGLVIAL-GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-VVSWTSIIV- 312 (610)
Q Consensus 238 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~- 312 (610)
..........+...+.+..+...+...... ........+..+...+...+++..+...+..... ++ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555555555555555555442 2233444555556666666677777777776654 22 122333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcC
Q 037713 313 GTAQHGQAEETLALYDEMVSAGV--KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSG 389 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 389 (610)
.+...|+.+.|...|.+...... ......+......+...++.+.+...+....+. ... ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 67888899999999888855221 123344444455567788999999999888763 333 4677888888888999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 390 HLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 390 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988887 44454 445555555555777899999999999988886
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.59 E-value=2.5 Score=35.78 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 037713 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189 (610)
Q Consensus 110 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 189 (610)
.++..+...+........++.+++.+ +.+...+|.++..|++.. .++....++. ..+.......+..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 44444444455555556666555554 345556666666666542 2223333331 1222333334444444444444
Q ss_pred HHHHHhh
Q 037713 190 AMEIFEQ 196 (610)
Q Consensus 190 A~~~~~~ 196 (610)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444444
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.54 E-value=0.42 Score=44.48 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=37.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCchh
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD-EPTWAALLSACKHHRNTE 424 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~ 424 (610)
+.|++..|.+.|...++.|.-.+ ....+--|...+...|++++|..+|..+ |-.|- +....-|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555555554321110 1123333444444555555554444444 11111 223333334444444444
Q ss_pred HHHHHHHHHhcCCCC
Q 037713 425 MGTRVANHLLSLKPE 439 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~ 439 (610)
+|...++++.+.-|.
T Consensus 233 ~A~atl~qv~k~YP~ 247 (262)
T COG1729 233 EACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHCCC
Confidence 444444444444444
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=94.24 E-value=0.67 Score=39.80 Aligned_cols=91 Identities=8% Similarity=-0.077 Sum_probs=62.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 287 (610)
...-+.+.|++++|..+|+-+.-.+. -|+.-+..+..+|-..+.+++|...+......+. .|+...--...+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 34445677888888888888777653 4555666777777778888888888877766553 34444444567777777
Q ss_pred CHHHHHHHHHhcCC
Q 037713 288 DIIAAKDIFGRMRR 301 (610)
Q Consensus 288 ~~~~A~~~~~~~~~ 301 (610)
+.+.|+..|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777776654
No 242
>PRK09687 putative lyase; Provisional
Probab=94.22 E-value=5.5 Score=38.32 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHH--HHHHHHHHHHhCCCCch
Q 037713 200 RNLFLWTALVSGLVQSRNE----IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL--GKQIHGLVIALGYESCL 273 (610)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~ 273 (610)
+|...-...+.++.+.|.. .+++..+..+.... |+...-...+.+....+.... ...........-..++.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D---~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED---KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKST 142 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC---CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCH
Confidence 3443334444555555542 35566666554333 566666566655554432110 01112222222223344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
.+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ ...++...+..+.. .+|...-...+.++.+.
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 455555555666665433333333333444444444444444432 13345555555443 23445555555566665
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLS 415 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 415 (610)
|+. .+...+-...+. ++ .....+.+++..|.. +|...+.++ .-.||..+-...+.
T Consensus 220 ~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 220 KDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred CCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHH
Confidence 553 333333333331 11 123445555555553 344444444 22344444433333
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.20 E-value=2.2 Score=36.13 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=45.5
Q ss_pred HHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCch
Q 037713 7 LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86 (610)
Q Consensus 7 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 86 (610)
..++..+...+........++.+.+.+. .++...|.++..|++.+. ......++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555555666666666666666652 456667777777765432 233333331 223333444555555555555
Q ss_pred HHHHHHHHh
Q 037713 87 KTISIFSTM 95 (610)
Q Consensus 87 ~A~~~~~~m 95 (610)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555544
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.16 E-value=0.38 Score=39.07 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC----cchHhHHHHhhhhcch
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP----SSYILLSNVYASAAMW 457 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 457 (610)
++...|+++.|++.|.+. .+-| ....||.-..++.-+|+.++|+.-+++++++..+.. .+|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 3333 566788888888888888888888888887653221 2566777788888888
Q ss_pred hHHHHHHHHHhhCCC
Q 037713 458 QHVSKVRKLMSVMEV 472 (610)
Q Consensus 458 ~~a~~~~~~m~~~~~ 472 (610)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888877765554
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.92 E-value=1.8 Score=36.28 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 373 (610)
....+.|++++|.+.|+.+...-.- -....-..|+.++.+.+++++|...++..++-+.-.|
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3344556666666666666553111 1233444555666666666666666666655433333
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.90 E-value=1.4 Score=36.91 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=37.2
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 386 SRSGHLDEAENLIKAM----PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4567777777777766 2222 2334445667777777777777777777777776554
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.74 E-value=0.094 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.61 E-value=0.67 Score=44.66 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=23.7
Q ss_pred HHhCCChHHHHHHHHHHHHcC--CCCCCHhHHHHHHHHHhccccHHHHHH
Q 037713 212 LVQSRNEIDAFYSFIEMRREG--VDIVDPLVLSSIVGACANFAVLELGKQ 259 (610)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~ 259 (610)
+.++.+.++|+..+.+-...- .. .--.++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~-~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLM-GRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH-HHHHHhccchhhhhhhHHHHHHHH
Confidence 445566677766666554321 10 122344555555555555555443
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=5.9 Score=36.34 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
|.--..+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445555555555555554443
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=13 Score=40.32 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=102.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHH----HHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh
Q 037713 41 PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL----TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116 (610)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~ 116 (610)
...-+++..+...++.|..+-..-.- |...-..+. +-+.+.|++++|..-|-+-... +.|.. +++-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhc
Confidence 45567788888888888888766432 222223333 3456789999999888776543 44432 344444
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS--WTAMLSAYARSGRKKDAMEIF 194 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 194 (610)
.......-...++.+.+.|+. +...-+.|+++|.+.++.+.-.++.+... ..... ....+..+-+.+-.++|.-+-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 445555666778888888854 44555779999999999988888877666 21111 223344444444444444433
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 037713 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228 (610)
Q Consensus 195 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 228 (610)
.+... +. ..+--.+-..+++++|++.+..|
T Consensus 487 ~k~~~-he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 32221 11 12222334456666666666554
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.50 E-value=3.1 Score=43.43 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCchh
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTC-LLDLLSRSGHLDEAENLIKAMP-FE-----PDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 424 (610)
....+.+.++++.+.++ -|+...|.. -...+...|++++|.+.|++.- .+ -....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34567777777777664 244444432 2345666788888888887651 11 12333444555577788888
Q ss_pred HHHHHHHHHhcCCCCCCcchH-hHHHHhhhhcch-------hHHHHHHHHHhh
Q 037713 425 MGTRVANHLLSLKPEDPSSYI-LLSNVYASAAMW-------QHVSKVRKLMSV 469 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 469 (610)
+|...+.++.+.+.-+...|. ..+-+|...|+. ++|.++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888876654444444 444455677777 777777776654
No 252
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=13 Score=39.97 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=80.8
Q ss_pred HHHhhcCCChHHHHHHHccCCCC-----CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC
Q 037713 45 IDAYGKCDLVQYAHHLLEEMPQR-----DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119 (610)
Q Consensus 45 i~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 119 (610)
++.+.+.+.+++|+..-+..+.. -...+-..|..+.-.|++++|-...-.|... +..-|.-.+..++..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcccc
Confidence 45666677777777776655421 2234777777777778888877777776542 3444444444444444
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 199 (610)
+... +...+-...-..+..+|..++..+.. ..-..+++...+.+...|+.+--.- ....-+++-.+
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp~~Lys~l~iis-------a~~~q~~q~Se 503 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWPGHLYSVLTIIS-------ATEPQIKQNSE 503 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCChhhhhhhHHHh-------hcchHHHhhcc
Confidence 4332 22222221112345566666666655 2223333333333333333221110 00011111111
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+...-..|...|...+++..|+.++-..+
T Consensus 504 -~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 504 -STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11112236677777777777777776554
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.39 E-value=0.16 Score=30.52 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888764
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=1.7 Score=41.58 Aligned_cols=154 Identities=8% Similarity=0.040 Sum_probs=82.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHH--HHHHHHhccCCHHH
Q 037713 285 KCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV--TFV--GLIYACSHVGLVGK 357 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~--~ll~a~~~~g~~~~ 357 (610)
..|+..+|-..++++.+ .|..+|+--=.+|..+|+.+.-...+++.... -.||.. +|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34666666666666653 36667776667777777777777777766543 223332 222 22334446677777
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHhcCchhHHHHHHH
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF--EPD----EPTWAALLSACKHHRNTEMGTRVAN 431 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (610)
|++.-++..+- .+.|.-.-.++...+.-.|++.++.++..+-.. +.. ...|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 77766655431 122333444555566667777777777665511 100 1112122222344567777777776
Q ss_pred HHh--cCCCCCC
Q 037713 432 HLL--SLKPEDP 441 (610)
Q Consensus 432 ~~~--~~~p~~~ 441 (610)
.-+ +++.+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 433 4444443
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.28 E-value=12 Score=39.12 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=99.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh------HHHHHHHHHH----hCCChHHHHHHHHhcCC--CChhhHH
Q 037713 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDV------VKSSLVDMYA----KCGLPNNARAVFDSIKL--KNSVSWT 175 (610)
Q Consensus 108 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~----~~g~~~~A~~~~~~m~~--~~~~~~~ 175 (610)
+..+++..+=.||-+.|.+.+....+.+--..+. .|+..+..+. .....+.|.++++.+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3344555555688888888888876643111111 2233333222 24567888899988875 6776665
Q ss_pred HHH-HHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 037713 176 AML-SAYARSGRKKDAMEIFEQAPVR-------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247 (610)
Q Consensus 176 ~li-~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 247 (610)
..- ..+...|++++|.+.|++.... ....+--+.-.+.-.++|++|.+.|..+.+..- -...+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 543 4456789999999999865431 223444556667788899999999999988652 455666655555
Q ss_pred Hh-ccccH-------HHHHHHHHHHHH
Q 037713 248 CA-NFAVL-------ELGKQIHGLVIA 266 (610)
Q Consensus 248 ~~-~~~~~-------~~a~~~~~~~~~ 266 (610)
|. ..++. ++|..++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 43 45555 666666666543
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=4.3 Score=38.40 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=79.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCchh
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA---LLSACKHHRNTE 424 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 424 (610)
.....|+..+|..+|...... .+-+...-..|...|...|+.+.|..++..+|..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888877663 233356666788888889999999999988864433333333 122233333333
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+... ++.-...+|+|...-..|+..|...|+.++|.+.+-.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 23334668988888889999999999999998876665443
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=6.8 Score=37.14 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred HHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-hh------hHHHHHHHHHhcCC
Q 037713 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN-SV------SWTAMLSAYARSGR 186 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~------~~~~li~~~~~~g~ 186 (610)
.....++...+...+....... +.+....-.|..+|...|+.+.|..++..++... .. .+-.++.-....++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788999999999888765 4456677778899999999999999999988441 11 12233333344444
Q ss_pred HHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 187 KKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 187 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
..+..+-+.. .| |...--.+...+...|+.++|++.+-.+.+.....-|...-..++..+.-.|
T Consensus 222 ~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444443 23 4555556777888899999998888777765432234444445554444444
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=93.00 E-value=4.9 Score=40.75 Aligned_cols=157 Identities=11% Similarity=0.114 Sum_probs=95.7
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 037713 305 VSW--TSIIVGTAQH-----GQAEETLALYDEMVS-AGVKPNE-VTFVGLIYACSH---------VGLVGKGRKLFKSMI 366 (610)
Q Consensus 305 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 366 (610)
..| ..++.+.... ...+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554441 134577888888772 2345553 333333222221 234556666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 367 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
+ --+.|......+..++.-.|+++.|..+|++. .+.|| ..+|....-.+.-.|+.++|.+.+++.++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 23446667777777777788899999999888 56676 44555555557778999999999999999998754332
Q ss_pred H--hHHHHhhhhcchhHHHHHH
Q 037713 445 I--LLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 445 ~--~l~~~~~~~g~~~~a~~~~ 464 (610)
. ..+++|...+ .++|.+++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHH
Confidence 2 2333555544 45555543
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.99 E-value=3 Score=43.00 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037713 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318 (610)
Q Consensus 239 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 318 (610)
.....++.-+.+.|..+.|.++-.. . ..-.+...++|+++.|.++-++.. +...|..|.......|
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Confidence 3345555555555665555554321 1 122345567888888877766654 5668888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
+.+-|.+.|.+... |..|+--|.-.|+.+.-.++.+....+ | -++....++.-.|+.++..+++
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888876532 344555566677776666665555442 2 2344444455567777777777
Q ss_pred HhCCC
Q 037713 399 KAMPF 403 (610)
Q Consensus 399 ~~m~~ 403 (610)
.+.+.
T Consensus 426 ~~~~~ 430 (443)
T PF04053_consen 426 IETGR 430 (443)
T ss_dssp HHTT-
T ss_pred HHcCC
Confidence 66643
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.93 E-value=6.5 Score=40.54 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=20.9
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
...++|+++.|.++.++.. +...|..|.....+.|+++-|++.|.+
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444555555544443333 333444444444444555444444444
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=1.1 Score=42.82 Aligned_cols=159 Identities=12% Similarity=0.048 Sum_probs=115.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHhcCCH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL----LDLLSRSGHL 391 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~ 391 (610)
-+|+..+|-..++++.+. .+-|...+...=.+|...|+.+.-...++++.. ...||...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999886 455788888888999999999999999988875 345666555444 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC----CCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 392 DEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE----DPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
++|++.-++. .+.| |.-.-.++.......|+..++.++..+-...-.. -.-.|-..+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 4555566667778889999999887765422111 11234455566777799999999998
Q ss_pred HHhhCCCccCCc
Q 037713 466 LMSVMEVKKEPG 477 (610)
Q Consensus 466 ~m~~~~~~~~~~ 477 (610)
.-.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 866555655554
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.72 E-value=13 Score=38.02 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
+..+..+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445566666666666665432111 1223344555555555555555555543
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.55 E-value=5.1 Score=32.92 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 371 (610)
......+..+...|+-++-.+++.++.+ .-.|++.....+..||.+.|+..++.+++.++.++ |+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445556677778888887788777764 23567777777888888888888888888877764 54
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.44 E-value=2.1 Score=40.06 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLL 382 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li 382 (610)
.|+.-+..+ +.|++.+|..-|...++.... -....+-.|..++...|++++|..+|..+.+.++-.|.. +.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 366555443 456677777777777764321 012234457777777777777777777777766555543 6666677
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 037713 383 DLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m 401 (610)
....+.|+.++|..+|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 7777777777777777766
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.05 E-value=14 Score=36.86 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=77.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--HH
Q 037713 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP---NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS--LQ 376 (610)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 376 (610)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 355678888888888888888888888877643211 2233333445556678888888887777662 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 377 HYTCLLDLLSRSGHLDEAENL-IKAMPFEPDEPTWAALLSACKHH------RNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
....+...+.. ..+..... ........-...+..+..-+... +..+.+...|+++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012222222333333 78889999999999999987777776666
Q ss_pred Hhh
Q 037713 450 VYA 452 (610)
Q Consensus 450 ~~~ 452 (610)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 654
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=38 Score=41.68 Aligned_cols=309 Identities=10% Similarity=0.005 Sum_probs=176.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhc----CCCC--hhhHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 037713 145 SLVDMYAKCGLPNNARAVFDSI----KLKN--SVSWTAMLSAYARSGRKKDAMEIFEQ-APVRNLFLWTALVSGLVQSRN 217 (610)
Q Consensus 145 ~li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 217 (610)
.|..+-.+++.+.+|...++.- ...+ ..-+-.+...|+.-+++|....+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555777899999999999883 2222 22334444588888888877766663 33332 2345566777899
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF-ISNAIVDMYAKCSDIIAAKDIF 296 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~ 296 (610)
+..|...|+.+.+.+ |+...+++.++......+.++......+-..... .+... .++.=+.+-.+.++++......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999877 2457788888887777777777666444333322 22222 2333344556777877776665
Q ss_pred HhcCCCChhHHHHH-H-HHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH--------
Q 037713 297 GRMRRKDVVSWTSI-I-VGTAQHG--QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS-------- 364 (610)
Q Consensus 297 ~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~-------- 364 (610)
. ..+..+|.+. + ..+.+.. +.-.-.++.+.+++.-+. =+.+|+..|.+..+.++.-.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 5566667665 2 2222222 221222344444332111 12233333322222221111
Q ss_pred --hHHhcCCCCCHH------HHHHH---HHHHHhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCchhHHH
Q 037713 365 --MIEDYGITPSLQ------HYTCL---LDLLSRSGHLDEAEN-LIKAMPFEP-----DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 365 --~~~~~~~~~~~~------~~~~l---i~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
.....+..++.. -|-.- .+-+.+....--|.+ .+......| -..+|......++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111113333321 12111 122222111111111 011111122 2567888888899999999999
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
...-++.+..+ +..+...+......|+-..|..+++...+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99888887775 47899999999999999999999988775444
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.90 E-value=11 Score=35.15 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=89.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAG--VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR- 387 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 387 (610)
+..-.+.|++++|.+.|+.+.... -+-...+...++.++-+.+++++|...+++....++-.||.. |...+.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 333445566666666666665432 111244455555666666666666666666666555555541 2222222221
Q ss_pred ------cCCHHHHHHHHHhC-------C---CCCCHHH----------H--HHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 388 ------SGHLDEAENLIKAM-------P---FEPDEPT----------W--AALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 388 ------~g~~~~A~~~~~~m-------~---~~p~~~~----------~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
..+...+.+-|..+ | ..||... . ..+..-|.+.|.+..|..-++.+++.-|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 11222222222222 1 1223211 1 12334478899999999999999987665
Q ss_pred CCc---chHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 440 DPS---SYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 440 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+. ++..+..+|...|..++|.+.-+.+..
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 443 556778889999999999998887754
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=91.84 E-value=2.5 Score=42.77 Aligned_cols=125 Identities=9% Similarity=0.005 Sum_probs=89.1
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-
Q 037713 343 VGLIYACSHV-----GLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSR---------SGHLDEAENLIKAM-PFEP- 405 (610)
Q Consensus 343 ~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p- 405 (610)
..++.+..+. ...+.|..+|.+......+.|+- ..|..+...+.. .....+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455554442 23567888898887444566653 455555444322 23345566666655 3444
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+..+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666666777888999999999999999999999999999999999999999988874
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.73 E-value=4 Score=41.57 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=76.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
-+..+...-+++-++..+ +.||-.+.-.++ +--.+..+.++.+++++..+. | ...+..-- .....|..
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~~--- 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGHF--- 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccch---
Confidence 344555555555555554 345543322222 333445577777777776553 1 00100000 00011111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 395 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
.+.+..-...|-..+=..|...+.+.|+.++|.+.++++++..|. +......|+..+...+.+.++..++.+..+-..
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111111222333344566667778888888888887766654 334566777778888888888887777755444
Q ss_pred ccCC
Q 037713 473 KKEP 476 (610)
Q Consensus 473 ~~~~ 476 (610)
.+..
T Consensus 327 pkSA 330 (539)
T PF04184_consen 327 PKSA 330 (539)
T ss_pred CchH
Confidence 4433
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.65 E-value=4.6 Score=33.07 Aligned_cols=87 Identities=16% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCCH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRSGHL 391 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 391 (610)
++..|+.+.|++.|.+.... .+-+...||.-..++.-.|+.++|..-+++..+-.|-.... ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34445555555555554443 11234445555555555555555555444444422211111 1122222334455555
Q ss_pred HHHHHHHHhC
Q 037713 392 DEAENLIKAM 401 (610)
Q Consensus 392 ~~A~~~~~~m 401 (610)
+.|..-|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 5555555443
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.64 E-value=11 Score=34.96 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=90.1
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccC-
Q 037713 284 AKCSDIIAAKDIFGRMRRK------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNE--VTFVGLIYACSHVG- 353 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g- 353 (610)
.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.||. ..|...+.-+....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3567777777777777642 12334445556667788888888877766532 23332 23333333222221
Q ss_pred ---C---HHHHHHHHHHhHHhcCCC---CCHHH------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----H
Q 037713 354 ---L---VGKGRKLFKSMIEDYGIT---PSLQH------------YTCLLDLLSRSGHLDEAENLIKAM-PFEPD----E 407 (610)
Q Consensus 354 ---~---~~~a~~~~~~~~~~~~~~---~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~ 407 (610)
+ ..+|..-|+.++.++.-. ||... =..+.+-|.+.|.+..|..-+++| .--|+ .
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 2 234555555555543221 22211 123456688999999988888887 11222 3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..+-.+..+|...|-.++|...-+-+..-.|++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 445567788999999999988765554444554
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.62 E-value=14 Score=35.88 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHhcCC-------CChhHHHHHHHHHHhcCC--
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAK--CS----DIIAAKDIFGRMRR-------KDVVSWTSIIVGTAQHGQ-- 319 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~-- 319 (610)
+....+++.+.+.|+..+..++-+-...... .. ....|..+|+.|++ ++-.++.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344455555555555554444332222211 11 24556777777764 244555555544 2222
Q ss_pred --hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 320 --AEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGL---VGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 320 --~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
.+.+..+|+.+.+.|+..+. .-+.+-+-++..... +.++.++++.+.+. |+++...+|..+.-+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 35667788888887776543 233333333333222 34677888888775 888888777665443
No 273
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.25 E-value=26 Score=38.29 Aligned_cols=116 Identities=10% Similarity=0.129 Sum_probs=65.3
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 317 HGQAEETLALYDEMVSAG-VKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
..+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 445678888888764432 33322 22333433333333255666666654331 2244444555555558888888
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCchhHHHHHHHHHhc
Q 037713 394 AENLIKAMPFE-PDEPTWAA-LLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 394 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+...|..|+.. .+..-|.- +..+....|+.++|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888311 11122222 44555667888888888888743
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.23 E-value=9.4 Score=33.22 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=16.7
Q ss_pred HHHHhHHCCCCCCChhhHHHHHHHHhccCCcH
Q 037713 91 IFSTMLALDKLQPDHFVFASLVKACGSLGATR 122 (610)
Q Consensus 91 ~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~ 122 (610)
..+.+.+.+ ++|+...+..+++.+.+.|.+.
T Consensus 16 YirSl~~~~-i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHN-IPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 334444444 5566666666666666555543
No 275
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.97 E-value=13 Score=34.54 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC-CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh-----CCCCchh
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRRE---GVD-IVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-----GYESCLF 274 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 274 (610)
+.-.+|..+.+.|++++.++.|.+|.-- .+. .-+..+.++++...+...+.+....+++.-.+. +-..=-.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3345666777777777777777766421 111 134556677777777666666666666544332 0011112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRK---------------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPN 338 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 338 (610)
+-+.|...|...|++..-.+++.++.+. -...|..=|+.|....+-..-..+|++...-. ..|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3355677777788888777777776521 13467777888888887777777888765422 2344
Q ss_pred HHHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHh--C-C--C
Q 037713 339 EVTFVGLIYACS-----HVGLVGKGRKLFKSMIEDYGITPSL-----QHYTCLLDLLSRSGHLDEAENLIKA--M-P--F 403 (610)
Q Consensus 339 ~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~--m-~--~ 403 (610)
+.. ..+|+-|. +.|.+++|..-|-++.+.|.-..++ --|..|..++.+.|-- -|+. . | -
T Consensus 227 PlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKN 300 (440)
T ss_pred hHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCC
Confidence 433 34555554 4577777765444444434322222 3356666777666521 1111 1 2 3
Q ss_pred CCCHHHHHHHHHHHHhc
Q 037713 404 EPDEPTWAALLSACKHH 420 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~ 420 (610)
.|.......|+.+|...
T Consensus 301 dPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN 317 (440)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 35566777888888754
No 276
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.83 E-value=12 Score=33.76 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+..||-+.--+...|+++.|.+.|+...+....-+ .++..-.-++--.|++..|.+-|...-..-.-.|-...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 44566666666666777777777776665433222 22211122333456666666555444322112222223322222
Q ss_pred HHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-------CcchHhHHHHhhhhc
Q 037713 384 LLSRSGHLDEAENL-IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-------PSSYILLSNVYASAA 455 (610)
Q Consensus 384 ~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 455 (610)
+.-++.+|..- .++.. ..|..-|...+-.+--..-.+ +.+++++.+...++ ..+|.-|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 23344444432 33331 223344444333322111111 11222332221111 357888999999999
Q ss_pred chhHHHHHHHHHhhCCC
Q 037713 456 MWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 456 ~~~~a~~~~~~m~~~~~ 472 (610)
..++|..+++.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999988765433
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.74 E-value=15 Score=34.74 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445668999999999999999999999999999999999999999777777777764
No 278
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.67 E-value=1.1 Score=39.51 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 385 LSRSGHLDEAENLIKAM-PFEPD------EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
+.+.|++++|..-|... ..-|. .+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45677777777777665 22222 344555556678888999999999999999998777777778899999999
Q ss_pred hHHHHHHHHHhhCC
Q 037713 458 QHVSKVRKLMSVME 471 (610)
Q Consensus 458 ~~a~~~~~~m~~~~ 471 (610)
++|.+-++.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999888886543
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=11 Score=40.90 Aligned_cols=139 Identities=18% Similarity=0.081 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
.+.+.+.|++++|...|-+...--.. ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 34444566666666555544321111 12344445555555666666666666655 3333345666666666666655
Q ss_pred HHHHHhHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 037713 360 KLFKSMIEDYGIT-PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431 (610)
Q Consensus 360 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (610)
++.+..-+ |.- .| ....+..+.+.+-+++|..+-.+.+. +......+ +...+++++|.++++
T Consensus 452 efI~~~~~--g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 452 EFISKCDK--GEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred HHHhcCCC--cceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 55443321 111 12 23345555566666666655555432 22222222 334566777766664
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.56 E-value=11 Score=32.82 Aligned_cols=132 Identities=9% Similarity=0.075 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChh
Q 037713 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG--RKKDAMEIFEQAPVRNLF 203 (610)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~ 203 (610)
+....+.+.+++|+...+..+++.+.+.|++.....++.-=.-+|.......+-.+.... -..-|..++.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 445556778999999999999999999999998888887666556555544443332211 1334455555543 2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
.+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++....+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778899999999999988775332 122224455666666665555555554444
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.54 E-value=2.1 Score=40.59 Aligned_cols=76 Identities=11% Similarity=0.165 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGVKPNEVTFVG 344 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 344 (610)
..++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34677888999999999999999988874 3678999999999999999999999998765 677777766655
Q ss_pred HHHH
Q 037713 345 LIYA 348 (610)
Q Consensus 345 ll~a 348 (610)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.73 E-value=20 Score=34.54 Aligned_cols=62 Identities=13% Similarity=-0.048 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 037713 204 LWTALVSGLVQSRNEI---DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 267 (610)
+...++.+|...+..+ +|..+++.+..... -.+.++..-+..+.+.++.+...+++..|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~--~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG--NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 34445555544431 12333334444444455555555555555443
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.69 E-value=0.67 Score=39.47 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 037713 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 190 (610)
+++.+.+.+.+......++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455555666666666777776655455667777777777777766666666663322 2233444555555555555
Q ss_pred HHHHhhC
Q 037713 191 MEIFEQA 197 (610)
Q Consensus 191 ~~~~~~~ 197 (610)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555543
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.43 E-value=36 Score=37.07 Aligned_cols=211 Identities=12% Similarity=0.061 Sum_probs=94.3
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCC-------cHHHHHHHHHHHhcCCCCCh
Q 037713 68 DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-------TRLGKQVHACFVLSPFCDDD 140 (610)
Q Consensus 68 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~ 140 (610)
+...| ++|-.+.|.|++++|.++..+.... .......|...++.+....+ -+....-+.+..+.....|+
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 34456 5677889999999999999666553 56666788888888876432 23455556666655433354
Q ss_pred h---HHHHHHHHHHhCCChHHHH-HHHHhc-----------CCCC--------hhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 141 V---VKSSLVDMYAKCGLPNNAR-AVFDSI-----------KLKN--------SVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 141 ~---~~~~li~~~~~~g~~~~A~-~~~~~m-----------~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
+ +|..+ ++|.-...-. .++..+ .+.+ ..++..+=+...+- ..+.|..
T Consensus 188 yK~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~- 257 (613)
T PF04097_consen 188 YKRAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNA- 257 (613)
T ss_dssp HHHHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-
T ss_pred HHHHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhccc-
Confidence 3 34433 3333211111 111110 0000 11221111111111 1112222
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC-CCCchhHH
Q 037713 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFIS 276 (610)
Q Consensus 198 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 276 (610)
..+.. .....+.-.|+++.|++.+-+ ..+.. .|.+.+.+.+.-+.-..-.+... ..+.... -.|...-+
T Consensus 258 -~~~p~---~Yf~~LlLtgqFE~AI~~L~~--~~~~~-~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~ 327 (613)
T PF04097_consen 258 -GSNPL---LYFQVLLLTGQFEAAIEFLYR--NEFNR-VDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNF 327 (613)
T ss_dssp ----------HHHHHHHTT-HHHHHHHHHT----T-H-HHHHHHHHHHHHTT---------------------------H
T ss_pred -chhHH---HHHHHHHHHhhHHHHHHHHHh--hccCc-ccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCH
Confidence 11222 234456678999999998877 22233 67777777776654433222211 2222111 01111445
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhcCC
Q 037713 277 NAIVDMYAK---CSDIIAAKDIFGRMRR 301 (610)
Q Consensus 277 ~~li~~y~~---~g~~~~A~~~~~~~~~ 301 (610)
..||..|.+ ..+..+|.+.|--+..
T Consensus 328 arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 328 ARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 677777776 4577888887776653
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.10 E-value=5.6 Score=34.40 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHH-----HHHHhCCChHHHHHHHHHHHHc
Q 037713 183 RSGRKKDAMEIFEQAPVRNLFLWTALV-----SGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
+.+..++|+..|..+...+--+|-.|. ....+.|+...|...|.+.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 334444444444444433333333222 2344455555555555555443
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.93 E-value=12 Score=33.14 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKD------VVSWTSIIVGTAQHGQAEETLALYDEM 330 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (610)
.+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555555554321 123334444444444554444444443
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.91 E-value=1.4 Score=28.43 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+|..+...|.+.|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56677778888888888888888888765
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.86 E-value=0.55 Score=28.16 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+|..+...+...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777788888888888888777763
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.48 E-value=30 Score=35.01 Aligned_cols=395 Identities=12% Similarity=0.072 Sum_probs=194.0
Q ss_pred CChHHHHHHHHHHHHh-CCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC-------C-----------CcchHHHHHH
Q 037713 17 QIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-------R-----------DHVSWASILT 77 (610)
Q Consensus 17 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~-----------~~~~~~~li~ 77 (610)
++++........+.+. |-.+-...+-.|+ .-+.+.+..|.+.|..-.. | |..-=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 4455555555555443 3222222333332 2466888888887754321 1 2222355567
Q ss_pred HHHcCCCchHHHHHHHHhHHCC---CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhc---CCCCChhHHHHHHHHHH
Q 037713 78 AYNQANLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS---PFCDDDVVKSSLVDMYA 151 (610)
Q Consensus 78 ~~~~~g~~~~A~~~~~~m~~~~---~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~ 151 (610)
.+...|++.++..++++|...= ...-+..+|+.++-.+++ ..|-++++. .+-|| |--++-.|.
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~ 205 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYL 205 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHH
Confidence 7889999999999999987642 022578888876555443 344444332 22222 334455554
Q ss_pred hCCChHHHHHHHHhcCCCChhhHHHHHHHHH-----hcCCHHHHHHHHhhC-CCCC-hhhHHHHHHHHHhCCChHHHHHH
Q 037713 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-----RSGRKKDAMEIFEQA-PVRN-LFLWTALVSGLVQSRNEIDAFYS 224 (610)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~ 224 (610)
+.=..-++.. +++. .|.......++.... +.--+-++.+.++.- ..|+ ...-..|+..+.+ +.+++..+
T Consensus 206 kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 206 KKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 3211111100 0000 000001111111110 001111222222221 1111 1112223333333 44444444
Q ss_pred HHHHHHcCCCC---CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH-------HHHHHHHhc----CCHH
Q 037713 225 FIEMRREGVDI---VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN-------AIVDMYAKC----SDII 290 (610)
Q Consensus 225 ~~~m~~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~----g~~~ 290 (610)
-+.+....+.+ .=..+|..++..+.+.++...|.+.+..+.-. .|+..+.. +|.+..+.- -+..
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 44333222110 12356777888888888888888877766554 23322221 222222211 1223
Q ss_pred HHHHHHHhcCCCChh-----HHHH-HHHHHHhcCC-hHHHHHHHHHHHHcCCCC-CHHH----HHHHHHHHhc---cCCH
Q 037713 291 AAKDIFGRMRRKDVV-----SWTS-IIVGTAQHGQ-AEETLALYDEMVSAGVKP-NEVT----FVGLIYACSH---VGLV 355 (610)
Q Consensus 291 ~A~~~~~~~~~~~~~-----~~~~-li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~t----~~~ll~a~~~---~g~~ 355 (610)
+=+.+|+.+...|+. .|-. -..-+.+.|. -++|+++++...+- .| |... +..+=.+|.+ ...+
T Consensus 360 ~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 360 DYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334455555443321 1211 1233555666 78899999988763 33 3222 2222233332 2234
Q ss_pred HHHHHHHHHhHHhcCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPS----LQHYTCLLDL--LSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTR 428 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (610)
.+-..+-+- ++..|++|- ...-|.|.++ +...|++.++.-.-.-. .+.|++.+|..+.-.....+++++|..
T Consensus 438 ~rLlkLe~f-i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 438 PRLLKLEDF-ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHH-HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444333 344588773 4566777665 45778888876543333 678999999888888888999999999
Q ss_pred HHHHH
Q 037713 429 VANHL 433 (610)
Q Consensus 429 ~~~~~ 433 (610)
++..+
T Consensus 517 ~l~~L 521 (549)
T PF07079_consen 517 YLQKL 521 (549)
T ss_pred HHHhC
Confidence 88754
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.27 E-value=1.1 Score=27.43 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667777777777777777777744
No 291
>PRK09687 putative lyase; Provisional
Probab=88.19 E-value=25 Score=33.80 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037713 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 220 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 299 (610)
++...+..+... +|..+-...+.+..+.++.. +...+-...+.+ + +....+.+..+.|+. +|...+..+
T Consensus 192 ~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQD----KNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhcC----CChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 444444444422 45555555555555555532 222222222221 1 223455556666664 455555555
Q ss_pred CC--CChhHHHHHHHH
Q 037713 300 RR--KDVVSWTSIIVG 313 (610)
Q Consensus 300 ~~--~~~~~~~~li~~ 313 (610)
.+ +|...-...+.+
T Consensus 261 ~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 261 LYKFDDNEIITKAIDK 276 (280)
T ss_pred HhhCCChhHHHHHHHH
Confidence 42 344443333433
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.13 E-value=6.8 Score=34.72 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH------H
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL------Q 376 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~------~ 376 (610)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++........|. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888999999999999999999887665554 346778888888999998888887775532111122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
.|..|. +...+++.+|.+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 23578999998888776
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.06 E-value=0.64 Score=28.51 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 294
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=22 Score=32.78 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC---C--C-CCCHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM---P--F-EPDEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m---~--~-~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
|-..|-.|.-..++..|...++.- | . .-+..+...||.+|- .|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 333444444455666666666552 1 0 113444555555542 34455544443
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.77 E-value=57 Score=37.34 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=15.4
Q ss_pred HHHHHHHhhcCC--ChHHHHHHHccCC
Q 037713 41 PNTLIDAYGKCD--LVQYAHHLLEEMP 65 (610)
Q Consensus 41 ~~~li~~~~~~g--~~~~A~~~f~~m~ 65 (610)
.-.+|..|.+.+ .++.|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 446677777766 5666666555444
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=3.7 Score=38.99 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=26.8
Q ss_pred CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHh
Q 037713 84 LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (610)
++++++.++..=.+.| +-||.++++.+++.+.+.++...|.++...|+.
T Consensus 115 ~pq~~i~~l~npIqYG-iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYG-IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhc-cccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555555 555555555555555555555555555544443
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.49 E-value=32 Score=34.22 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC----CCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP----EDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
....+|..+...+.+.|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467788999999999999999999999987652 2456667778889999999999998887766
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.34 E-value=15 Score=35.58 Aligned_cols=126 Identities=12% Similarity=0.161 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc--c----ccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCC
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN--F----AVLELGKQIHGLVIALGY---ESCLFISNAIVDMYAKCSD 288 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~ 288 (610)
+++.+.+++.|.+.|++ -+..+|.+....... . .....+..+|+.|.+.-. .++-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk-~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFK-RSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccC-ccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34566788888888888 666777664444333 1 235678889999988642 2334445555433 3333
Q ss_pred ----HHHHHHHHHhcCC-----CChhHHHHHHHHHHh-cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 289 ----IIAAKDIFGRMRR-----KDVVSWTSIIVGTAQ-HGQ--AEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 289 ----~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
.+.++.+|+.+.+ .|..-+.+-+-++.. ... ...+.++++.+.+.|+++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2445566665543 233333333333332 222 457899999999999998887776554
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=25 Score=32.25 Aligned_cols=24 Identities=0% Similarity=0.016 Sum_probs=17.6
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
-...+++.+|+.+|+++.....++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 456688999999999887554443
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.64 E-value=53 Score=35.83 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=77.3
Q ss_pred ccCChHHHHHHHHHHHH----hCCCCCCc-hHHHHHHHhhcCCChHHHHHHHccCCC----CCcchHHHHHH-----HHH
Q 037713 15 RHQIALTVKTLHAQIIK----LGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQ----RDHVSWASILT-----AYN 80 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~----~g~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~-----~~~ 80 (610)
...+++.|+..++.... .++..-.+ ....++..|.+.+... |.+..++..+ .....|....+ .+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 44566667766665532 22222112 2234456666555544 7766665432 11222333322 222
Q ss_pred cCCCchHHHHHHHHhHHCCC--CCCChhhHHHHHHHHh--ccCCcHHHHHHHHHHHhcCC---------CCChhHHHHHH
Q 037713 81 QANLPQKTISIFSTMLALDK--LQPDHFVFASLVKACG--SLGATRLGKQVHACFVLSPF---------CDDDVVKSSLV 147 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~--~~pd~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li 147 (610)
..+++..|++.++.+..... ..|-...+..++.+.. +.+..+.+.+..+.+..... .|-..++..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 33688888888877755321 2344555555665543 44555666666665533211 23445666666
Q ss_pred HHH--HhCCChHHHHHHHHhc
Q 037713 148 DMY--AKCGLPNNARAVFDSI 166 (610)
Q Consensus 148 ~~~--~~~g~~~~A~~~~~~m 166 (610)
+.+ ...|+++.+...++.+
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 643 4567766666665544
No 301
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.55 E-value=34 Score=33.53 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=60.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCCCHHHHHHH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAG-----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI---EDYGITPSLQHYTCL 381 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~l 381 (610)
|..++.-.+.++++++.|+...+.- .......+..|-+-|.+..++++|.-+..+.. ..+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555566666665544311 11112345555566666666666554443322 222333222223222
Q ss_pred -----HHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 382 -----LDLLSRSGHLDEAENLIKAM-------PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 382 -----i~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
.-+|...|.+.+|.+.-++. +.+| -......+...|...|+.|.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23344555555554444433 3222 13334456666777777777777776654
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.34 E-value=6.8 Score=33.63 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 424 (610)
..-...++.+++..++..+.- +.|.. ..-..-...+.+.|++.+|..+|+++ .-.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 344467788888888887754 44543 22223334466788888888888888 33344455556666666555544
Q ss_pred HHHHHHHHHhcCCC
Q 037713 425 MGTRVANHLLSLKP 438 (610)
Q Consensus 425 ~a~~~~~~~~~~~p 438 (610)
.=....+++++.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 45555566666665
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.79 E-value=5.8 Score=30.55 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+.-++.+-+..+....+.|+.....+.++||-+.+++..|.++|+..+.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 34466777777777788999999999999999999999999999988764 3334556776654
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=8.5 Score=36.71 Aligned_cols=97 Identities=12% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-K--------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 338 (610)
|.+....+...++..-....+++++...+-++.. | ..++|-.++. .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4555555666666666667788888888777763 2 2334433332 3467789999888889999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
..|++.++..+.+.+++.+|.++.-.|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888777664
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.23 E-value=23 Score=30.44 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=29.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGL-IYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~ 367 (610)
.+.++.+++..++..|.-. +|.......+ ..-+...|++.+|.++|+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3466777777777777653 4443322211 1234566777777777777654
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.05 E-value=6.8 Score=30.54 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 322 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
+..+-+..+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 5566666677777899999999999999999999999999999887644 333377777653
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.71 E-value=1.5 Score=41.94 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=77.6
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCch
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNT 423 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 423 (610)
+-|.+.|.+++|+..|...+. +.| |.++|..-..+|.+..++..|+.-.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 458899999999999988765 445 7888888889999999998887655443 111 1123344444555567888
Q ss_pred hHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
++|.+-++.++++.|.+. .|-..|++.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999853 4455555555555554443
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.57 E-value=3.4 Score=39.23 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555555543
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.35 E-value=1.5 Score=26.45 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=18.8
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 037713 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160 (610)
Q Consensus 129 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 160 (610)
++.++.. |.+...|+.|..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 555666777777777777766664
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.05 E-value=6.5 Score=33.16 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=31.8
Q ss_pred cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
.++.+.++.++..+.-+.|+.+..-..-+.++...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666666666666655566666666666666666666655433
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.70 E-value=21 Score=36.25 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 386 SRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
...|.++.+.+.+... -+.....+...++......|+.++|....+.|+.-+-.+++.....+..-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3344444444444433 11223334444444444445555555555444443333333333333333333444444444
Q ss_pred HHHHh
Q 037713 464 RKLMS 468 (610)
Q Consensus 464 ~~~m~ 468 (610)
++..-
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 44443
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.30 E-value=1.6 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=21.2
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHH
Q 037713 70 VSWASILTAYNQANLPQKTISIFSTMLA 97 (610)
Q Consensus 70 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 97 (610)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777888888888888888888777
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.64 E-value=15 Score=32.13 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCcc
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (610)
+++|...|+++...+|++ ..|..-..+. ..|-+++.++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 677888888888899987 5666555554 35777777777666543
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=87 Score=34.20 Aligned_cols=167 Identities=12% Similarity=0.117 Sum_probs=92.2
Q ss_pred HhccCCcHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 037713 115 CGSLGATRLGKQVHACFVLSPFCD---DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 191 (610)
+.+.+.+++|..+-+... |..+ -..++...++-+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334455555555544332 2233 23466777788888888888888888888888888877777777777666544
Q ss_pred HHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 037713 192 EIFEQAPV-RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270 (610)
Q Consensus 192 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (610)
.+.-.-+. .+...|..++..+.. .+ ..-|.+.++.= |++...-..++++- . .+..+. .
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~W--p~~Lys~l~iisa~--~----------~q~~q~--S 502 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKEW--PGHLYSVLTIISAT--E----------PQIKQN--S 502 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHhC--ChhhhhhhHHHhhc--c----------hHHHhh--c
Confidence 44333222 244567666666655 11 12222222221 12222222222211 1 111111 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 304 (610)
.+..+-..|+..|...+++++|.+.+-...++++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1222334488889999999999998888776543
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.30 E-value=2.6 Score=24.74 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=15.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+..++.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666655554
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.14 E-value=46 Score=30.21 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=79.0
Q ss_pred CChHHHHHHHccCC--CCC-cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH--HhccCCcHHHHH
Q 037713 52 DLVQYAHHLLEEMP--QRD-HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA--CGSLGATRLGKQ 126 (610)
Q Consensus 52 g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~--~~~~~~~~~a~~ 126 (610)
|-.+.|+-=|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+.+ |. .-|..+=++ +--.|++..|.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~-y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PT-YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---Cc-chHHHhccceeeeecCchHhhHH
Confidence 44444444444322 333 3457777777778888888888888887743 32 112222221 223467777776
Q ss_pred HHHHHHhcCCCCCh--hHHHHHHHHHHhCCChHHHHH-HHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHhhCCCCC-
Q 037713 127 VHACFVLSPFCDDD--VVKSSLVDMYAKCGLPNNARA-VFDSIKLKNSVSWTAMLSAYAR-SGRKKDAMEIFEQAPVRN- 201 (610)
Q Consensus 127 ~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~- 201 (610)
-+...-+.+ +.|+ ..|--+.. ..-++.+|.. +.++....|..-|..-|-.|.- .=..+.+.+-...-...+
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 665555443 2222 22222211 1223444443 3344444455555554433321 111122111111111111
Q ss_pred ------hhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 202 ------LFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 202 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
..+|--+..-|...|+.++|..+|+-....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 134444555555556666666665555443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.01 E-value=97 Score=33.83 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=98.3
Q ss_pred chhhHHHhhhhhhccCChHHHHHHHHHHHH-hCCCCCCc-----hHHHHHHHhhcCCChHHHHHHHccCC----CCCcc-
Q 037713 2 QISHYLHRLRVCARHQIALTVKTLHAQIIK-LGLHQYGP-----LPNTLIDAYGKCDLVQYAHHLLEEMP----QRDHV- 70 (610)
Q Consensus 2 ~~~~y~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~- 70 (610)
++.+|..+|.. |.+.+..+.+ ..++|... -+..++ +....+++.|+..+++.. +++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL--~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASIL--LEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 35667777654 4455555553 33333211 133333 345667888988887653 22211
Q ss_pred ----hHHHHHHHHHcCCCchHHHHHHHHhHHCCCC---CCChhhHHHH-HHHHhccCCcHHHHHHHHHHHhcC---CCCC
Q 037713 71 ----SWASILTAYNQANLPQKTISIFSTMLALDKL---QPDHFVFASL-VKACGSLGATRLGKQVHACFVLSP---FCDD 139 (610)
Q Consensus 71 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~pd~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~ 139 (610)
+-..++..+.+.+... |....++..+.-.- .+=...|..+ +..+...++...|.+.++.+.... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234556666666555 88888887653201 1122223333 222333379999999988776543 2455
Q ss_pred hhHHHHHHHHHH--hCCChHHHHHHHHhcC----C---------CChhhHHHHHHHH--HhcCCHHHHHHHHh
Q 037713 140 DVVKSSLVDMYA--KCGLPNNARAVFDSIK----L---------KNSVSWTAMLSAY--ARSGRKKDAMEIFE 195 (610)
Q Consensus 140 ~~~~~~li~~~~--~~g~~~~A~~~~~~m~----~---------~~~~~~~~li~~~--~~~g~~~~A~~~~~ 195 (610)
..++-.++.+.. +.+..+++.+.++++. . |-..+|..+++.+ ...|+++.+...++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555443 4566667777666552 1 1345666666544 56677666665544
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.96 E-value=15 Score=32.85 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL---GYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
-++|++.|-++...+.- -++.....+...|. ..+.+++++++-.+.+. +-.+|+.++.+|++.|-+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPEL-ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35677777777666654 44444444444443 56667777776666654 22456777777777777777777663
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.48 E-value=13 Score=31.42 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=27.8
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
..++.+++..+++.|.- +.|+. ..-..-.-.+.+.|++++|..+|++.
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 46677777777776643 34432 12222233355677777777777777
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.17 E-value=33 Score=36.03 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=101.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
-.|+++.|..++..++++ .-+.++.-+...|-.++|+++ .||..-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 357888888877777643 234455556677777777754 3333221 1223467999999888655
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 365 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N---- 725 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN---- 725 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc----
Confidence 4 246679999999999999999999998763 36677777888888776555555555554444
Q ss_pred HhHHHHhhhhcchhHHHHHHHHH
Q 037713 445 ILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 445 ~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.--.+|...|+++++.+++..-
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHHhc
Confidence 2334567889999988876543
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.11 E-value=11 Score=29.01 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=39.7
Q ss_pred hHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHH-hcCCCCChhHHHHHH
Q 037713 86 QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV-LSPFCDDDVVKSSLV 147 (610)
Q Consensus 86 ~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 147 (610)
-++.+-++.+...+ +.|++....+.+++|.+.+++..|.++++-+. +.| .+...|..++
T Consensus 24 we~rr~mN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYD-LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 35556666666666 77888888888888888888888888887665 333 2333555444
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.09 E-value=28 Score=27.15 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=27.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+...|++++|..+.+.+..||+..|-+|-.. +.|..+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4455666666666666666666666555432 3444555555555555554
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.22 E-value=18 Score=30.55 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred hHHHHHHHhhcCCChHHHHHHHccCCC---------CCcchHHHHHHHHHcCCC-chHHHHHHHHhHHCCCCCCChhhHH
Q 037713 40 LPNTLIDAYGKCDLVQYAHHLLEEMPQ---------RDHVSWASILTAYNQANL-PQKTISIFSTMLALDKLQPDHFVFA 109 (610)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~pd~~~~~ 109 (610)
..|.+++-.+..+++....++++.+.. .+..+|++++.+.++... ---+..+|..|.+.+ .+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~-~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND-IEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC-CCCCHHHHH
Confidence 457788877778888888888777642 356678888888866655 345677888888766 788888888
Q ss_pred HHHHHHhcc
Q 037713 110 SLVKACGSL 118 (610)
Q Consensus 110 ~ll~~~~~~ 118 (610)
.++++|.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888887654
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.22 E-value=51 Score=30.89 Aligned_cols=183 Identities=12% Similarity=0.125 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHhcCC----C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHhccC
Q 037713 286 CSDIIAAKDIFGRMRR----K---DVVSWTSIIVGTAQHGQAEETLALYDEMVSA---GV--KPNEVTFVGLIYACSHVG 353 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~g 353 (610)
..+.++|+.-|.+..+ + .-.+.-.||..+.+.|++++.++.|++|... .+ .-+..+.++++..-+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467788888877653 2 2345566788888999999999988888642 11 124566777877777777
Q ss_pred CHHHHHHHHHHhHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-------HHHHHHHHH
Q 037713 354 LVGKGRKLFKSMIEDY----GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-------FEPD-------EPTWAALLS 415 (610)
Q Consensus 354 ~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-------~~~~~~ll~ 415 (610)
+.+.-..+++.-.+.. +-.....+-+-|...|...|.+.+-.++++++. -+.| ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 7666655555433321 112223444667777888888888777777761 0111 345666667
Q ss_pred HHHhcCchhHHHHHHHHHhcCCC--CCCcchH----hHHHHhhhhcchhHHHH-HHHHHh
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKP--EDPSSYI----LLSNVYASAAMWQHVSK-VRKLMS 468 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~----~l~~~~~~~g~~~~a~~-~~~~m~ 468 (610)
.|..+++-..-..++++.+.... +.|...- +=+.+..+.|.|++|.. +|+..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 78888888888889998875442 2232221 22345667788888754 344443
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.80 E-value=0.91 Score=38.63 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCch
Q 037713 7 LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86 (610)
Q Consensus 7 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 86 (610)
..+++.+.+.+.+.....+++.+.+.+...++...|.|+..|++.++.+...+.++.... .-...++..+-+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 345666666777777777888887766566777888888888888877777777774332 33445666666667666
Q ss_pred HHHHHHHHhH
Q 037713 87 KTISIFSTML 96 (610)
Q Consensus 87 ~A~~~~~~m~ 96 (610)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 7666666553
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.47 E-value=6 Score=24.68 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666665544
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.16 E-value=5.2 Score=22.51 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
|..+...+...++++.|...+++.++..|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555566666666666666666665553
No 328
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.01 E-value=22 Score=27.70 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHC
Q 037713 19 ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98 (610)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 98 (610)
-++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+..||...|-+|-. .+.|-.+.+..-+..|-.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555444321 22222223345566788888888888888888888877654 3556556666666666666
Q ss_pred CCCCCChhhHH
Q 037713 99 DKLQPDHFVFA 109 (610)
Q Consensus 99 ~~~~pd~~~~~ 109 (610)
| .|...+|.
T Consensus 98 g--~p~lq~Fa 106 (115)
T TIGR02508 98 G--DPRLQTFV 106 (115)
T ss_pred C--CHHHHHHH
Confidence 5 55554444
No 329
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.84 E-value=4 Score=24.16 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHH
Q 037713 71 SWASILTAYNQANLPQKTISIFSTMLA 97 (610)
Q Consensus 71 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 97 (610)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466677778888888888888888776
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.61 E-value=5.5 Score=24.84 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777777777888777777777654
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.45 E-value=1.2e+02 Score=33.04 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=35.7
Q ss_pred HHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCCc-------hHHHHHHHHhHHC
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYNQANLP-------QKTISIFSTMLAL 98 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~ 98 (610)
++|--+.|||++++|.++..+.. .+....+-..+..|+.+.+- +....-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 46667889999999999993332 33455677778888775322 3444556666553
No 332
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.19 E-value=71 Score=32.09 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=49.1
Q ss_pred CHHHHHHHH---HHHHhcCchhHHHHHHHHHhcCCCC-CCcchHhHHHHhh-hhcchhHHHHHHHHHhh
Q 037713 406 DEPTWAALL---SACKHHRNTEMGTRVANHLLSLKPE-DPSSYILLSNVYA-SAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 406 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 469 (610)
|...|.++. ..+.+.|-+.-|.++.+-++.++|. ||-.-...++.|+ +++.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 455555554 4478899999999999999999998 8888888888875 66777767777666543
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.91 E-value=13 Score=28.99 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHh
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (610)
+..+-++.+...+ +.|++....+.|++|.+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555 677777777777777777777777777776543
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.77 E-value=27 Score=31.34 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCCHHHH
Q 037713 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-------LKNSVSWTAMLSAYARSGRKKDA 190 (610)
Q Consensus 123 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A 190 (610)
.|+..|-.+...+.-.++...-+|...|. ..+.+++..++.+.. ..|+..+.+|++.|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443344444444444443 233444444443322 12444455555555555555444
No 335
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.50 E-value=17 Score=24.70 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=35.5
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCc
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 519 (610)
...++-++.+.|++++|.+..+.+.+. .|...++..+-..+.++|++.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778889999999999999888642 44566666666666777777763
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.31 E-value=3.8 Score=22.86 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=17.4
Q ss_pred cchHhHHHHhhhhcchhHHHHHHH
Q 037713 442 SSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677788888888888877654
No 337
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.12 E-value=41 Score=28.01 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHhc-CCCCC-CcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 422 NTEMGTRVANHLLS-LKPED-PSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 422 ~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++.+++.+++.+.+ -.|.. ......|+-.+++.+.++.+.++.+...
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 45556666666664 23322 2233345555666666666666665554
No 338
>PRK10941 hypothetical protein; Provisional
Probab=74.74 E-value=11 Score=36.00 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+.|-.+|.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566677899999999999999999999999888888889999999999999887777543
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.65 E-value=11 Score=33.99 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 380 CLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.-+..+.+.+++.+|+...+.- +-+| |..+-..++.-++..|++++|..-++-+-++.|++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3455666777888887766544 4455 34455567777888888888888888777777765
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.83 E-value=4.9 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556788999999999999999999998853
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.73 E-value=37 Score=32.13 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=59.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-
Q 037713 311 IVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR- 387 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 387 (610)
|++++..+++.+++...-+-.+. .++|...-. -|-.|++.+.+..+.++-...... .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 78888899999888776655442 244444333 344578889988888887777664 222234458888777654
Q ss_pred ----cCCHHHHHHHHHhC
Q 037713 388 ----SGHLDEAENLIKAM 401 (610)
Q Consensus 388 ----~g~~~~A~~~~~~m 401 (610)
.|.+++|+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999988543
No 342
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.21 E-value=1.3e+02 Score=31.82 Aligned_cols=368 Identities=10% Similarity=0.016 Sum_probs=187.1
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCc-hHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHH-cCCCchHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYN-QANLPQKTI 89 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~-~~g~~~~A~ 89 (610)
+..+++.++.++..++.. .|..+ -|......=.+.|..+.+.++|++-.. .++..|...+.-+. ..|+++...
T Consensus 57 ~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 57 SIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred chhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 333444455555544432 22222 233333333456777777777776542 24445655554433 346666666
Q ss_pred HHHHHhHHCCCCC-CChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-----CCChHHHHHHH
Q 037713 90 SIFSTMLALDKLQ-PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK-----CGLPNNARAVF 163 (610)
Q Consensus 90 ~~~~~m~~~~~~~-pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 163 (610)
+.|+.....-|.. -....|...|..-...+++.....+++++++.....=...+.......-. .-..+++.++-
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 7777666532121 12334555555556666777777777777764321111111111111111 11122222211
Q ss_pred HhcC-----------------------CC-C--hhhHH-------HHHHHHHhcCCHHHHHHHHhhCCC-------C---
Q 037713 164 DSIK-----------------------LK-N--SVSWT-------AMLSAYARSGRKKDAMEIFEQAPV-------R--- 200 (610)
Q Consensus 164 ~~m~-----------------------~~-~--~~~~~-------~li~~~~~~g~~~~A~~~~~~~~~-------~--- 200 (610)
.... .+ + ...-+ ..-..|-..-...+....|+.-.. |
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 1110 00 0 00000 111112222333334444443221 1
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc--hhHHH
Q 037713 201 -NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC--LFISN 277 (610)
Q Consensus 201 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 277 (610)
+..+|+.-+.--...|+.+.+.-+|+...-.--. =+. .|---+.-....|+.+.+..++....+.-.+.. ..+..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~e-fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDE-FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHH-HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 4568888888899999999999999887532110 111 222222222333888888888777766654433 33333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhcCChHHHH---HHHHHHHHcCCCCCHHHHHHHHH----
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR--KDVV-SWTSIIVGTAQHGQAEETL---ALYDEMVSAGVKPNEVTFVGLIY---- 347 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~---~l~~~m~~~g~~p~~~t~~~ll~---- 347 (610)
+.+. -..|+++.|..+++.+.. |+.+ .-..-+....+.|..+.+. +++.........+. ++..+.-
T Consensus 373 a~f~--e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~--i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFE--ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG--ILEKLYVKFAR 448 (577)
T ss_pred HHHH--HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc--hhHHHHHHHHH
Confidence 3332 235799999999998864 3322 2222334455677777777 33333332212222 1111111
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 348 -ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 348 -a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
-+.-.++.+.|..++..+.+ ..+++...|..+++...-.+...
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCCcch
Confidence 12335788999999999987 57888899999998877665433
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.12 E-value=27 Score=36.63 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 037713 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 228 (610)
+.|+++.|.++-.+ ..+..-|..|..+..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 44555555554433 223445666666666666666665555444
No 344
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.45 E-value=46 Score=26.35 Aligned_cols=76 Identities=9% Similarity=0.027 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
..++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-.. +.|.-+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 44566666666665542 2333333334445566666666333333344555555554432 4555555555555443
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.98 E-value=2.7e+02 Score=35.00 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=83.8
Q ss_pred HHHHhhcCCChHHHHHHHccC----CCCC--cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc
Q 037713 44 LIDAYGKCDLVQYAHHLLEEM----PQRD--HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117 (610)
Q Consensus 44 li~~~~~~g~~~~A~~~f~~m----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~ 117 (610)
|..+--+|+.+..|.-.|++- .+.+ ..-|-.+...|..-++++....+...-. ..|+ .+. -|--...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCcc--HHH-HHHHHHh
Confidence 334555677777777777762 2111 1223334447777777777666555311 1222 222 2333445
Q ss_pred cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHH-HHHHHhcCCHHHHHHH
Q 037713 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAM-LSAYARSGRKKDAMEI 193 (610)
Q Consensus 118 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~l-i~~~~~~g~~~~A~~~ 193 (610)
.|+++.|...++.+.+.+ ++....++.++......|.++.+....+..... .+..|+++ +.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 677888888888887765 444556666666666667777766666655532 22333322 2333556666666555
Q ss_pred HhhCCCCChhhHHHH
Q 037713 194 FEQAPVRNLFLWTAL 208 (610)
Q Consensus 194 ~~~~~~~~~~~~~~l 208 (610)
.. .++..+|.+.
T Consensus 1541 l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE 1552 (2382)
T ss_pred hh---cccccchhHH
Confidence 54 4455555544
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.65 E-value=32 Score=34.96 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=74.4
Q ss_pred hcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 316 QHGQAEETL-ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 316 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
..|+...|- +++.-++...-.|+.+-..+.| ..+.|+++.+.+.+....+ -+.....+-.+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 356665554 3444455544456655544444 4667888888888776654 2444556777888888888888888
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 395 ENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 395 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
..+-..| +.+ -++.....-.......|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8877777 211 12333333333345567778888888888877754
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.23 E-value=1.4e+02 Score=31.00 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (610)
...-+++..+.++-++.-...+-.+|...| .+...|..++.+|... .-+.--.+++.+++..+. |++....|++.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 344455666666666666666666666655 4555666666666555 444455556655555432 33344445555
Q ss_pred HHhcCCHHHHHHHHHhc
Q 037713 283 YAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~ 299 (610)
|-+ ++.+.+..+|..+
T Consensus 142 yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 142 YEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHH-hchhhHHHHHHHH
Confidence 544 5555555555554
No 348
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.45 E-value=6.3 Score=22.99 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=23.6
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
++..++.+|.+.|++++|.+.++.+.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788999999999999999998865
No 349
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=69.04 E-value=1.1e+02 Score=29.36 Aligned_cols=16 Identities=13% Similarity=0.028 Sum_probs=9.1
Q ss_pred hhhhcchhHHHHHHHH
Q 037713 451 YASAAMWQHVSKVRKL 466 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~ 466 (610)
+.++++|++|.+.++.
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4455666666665553
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.34 E-value=22 Score=34.39 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=61.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS- 388 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 388 (610)
..-|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|..-....+.- -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 56788999999999999987764 56 8999999999999999998887776665441 12345555555
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH
Q 037713 389 ------GHLDEAENLIKAM-PFEPDE 407 (610)
Q Consensus 389 ------g~~~~A~~~~~~m-~~~p~~ 407 (610)
|...+|.+-.+.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4555555544444 567774
No 351
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.24 E-value=68 Score=28.77 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=54.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPS-----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE-PTWAALLSACKHHR 421 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g 421 (610)
+...|++++|..-|..+... +++. ...|..-..++.+.+.++.|.+--.+. .+.|.. .....-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456666666666666552 2222 133444445666777777776655444 444421 11222234577788
Q ss_pred chhHHHHHHHHHhcCCCCCC
Q 037713 422 NTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~ 441 (610)
.++.|+.-|+++++.+|...
T Consensus 183 k~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hHHHHHHHHHHHHHhCcchH
Confidence 89999999999999998754
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.05 E-value=18 Score=26.83 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=22.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 397 (610)
+....++|+..|....++..-.|+. .+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555432222221 3445555555555555555443
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.05 E-value=1.6e+02 Score=30.55 Aligned_cols=49 Identities=10% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
.|.....+++..+++.-.....+.+..++...| .+...+-.++..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 444444444555444444444444444444433 2223333444444443
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.80 E-value=4.9 Score=38.82 Aligned_cols=89 Identities=13% Similarity=0.258 Sum_probs=63.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 387 RSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
..|.+++|.+.|... ...|. ...|..-.+.+.+.+....|++-+..+++++|+....|-.-..+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777666 44443 4444445555777778888888888888888887777777777777888888888888
Q ss_pred HHHhhCCCccC
Q 037713 465 KLMSVMEVKKE 475 (610)
Q Consensus 465 ~~m~~~~~~~~ 475 (610)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 87777666543
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.62 E-value=31 Score=31.34 Aligned_cols=76 Identities=16% Similarity=0.056 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCCHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIED-YGITPSLQHYTCLLD 383 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~ 383 (610)
|.+.-++.+.+.+...+|+...++-.+. +| |.-+-..++..++-.|++++|..-++-...- ....+....|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445567777788888888888777665 33 4445556777788888888887766655331 012223345555554
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.37 E-value=22 Score=31.26 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+++|+.-|++++.++|+...++..++++|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5677777888889999999999999999988765
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.76 E-value=2.6e+02 Score=32.32 Aligned_cols=125 Identities=8% Similarity=-0.023 Sum_probs=66.7
Q ss_pred CCHhHHHHHHHHHhccccHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhHHHHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLEL-GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK-DIFGRMRRKDVVSWTSIIVG 313 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~ 313 (610)
++...-.....++...+..+. +...+..+.+ .++..+-.+.+.++.+.|..+.+. .+...+..+|...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 555555555555555554322 1222222222 345666666777777777654442 23344445555555556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+...+. +++...+..+.+ .|+...-...+.++.+......+...+..+.+
T Consensus 831 L~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666654 345555555553 35555555666666665334455656655544
No 358
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.72 E-value=1.7e+02 Score=30.14 Aligned_cols=113 Identities=16% Similarity=0.072 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhc---CC-CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 122 RLGKQVHACFVLS---PF-CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 122 ~~a~~~~~~~~~~---g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
++...++...... |+ ..+......++... .|+...+..+++..... ... ..+...+++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~~ 218 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHhh
Confidence 4455555554332 33 44445555554432 67888777777655311 111 12222222322
Q ss_pred C---CCCChhhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc
Q 037713 197 A---PVRNLFLWTALVSGLVQ---SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250 (610)
Q Consensus 197 ~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 250 (610)
. ..++...+..+++++.+ .++++.|+.++..|.+.|.. |....-..+..++-.
T Consensus 219 ~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d-~~~i~rrl~~~a~ed 277 (413)
T PRK13342 219 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGED-PLFIARRLVIIASED 277 (413)
T ss_pred hhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHh
Confidence 1 12233345555666655 47899999999999999866 655554444444433
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.82 E-value=32 Score=26.08 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHH
Q 037713 22 VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89 (610)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 89 (610)
+..++..++..|+. +....+.+-..-...|+.+.|+++++.++ +....|...++++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 55677777777754 22233333333336688889999998888 77888888888888877655543
No 360
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.62 E-value=18 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
+|..+...|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555566666666666666665544
No 361
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.54 E-value=1e+02 Score=29.95 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=25.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVT---FVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
.+.|+..+|.+.|+++.+. .|-... -..|+.+|.....+.....++.+
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777776553 221111 22456666655555544444433
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.14 E-value=1.4e+02 Score=28.53 Aligned_cols=160 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHc-----cCCCCCcchHHHHHH
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE-----EMPQRDHVSWASILT 77 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~-----~m~~~~~~~~~~li~ 77 (610)
+..|..+=++-+..=--++-...++.+...-......-|..|+ .+..-+.+|+++|+ +-.-.|...-..+++
T Consensus 96 ~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~ 172 (292)
T PF13929_consen 96 INDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLK 172 (292)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHH
Q ss_pred HHHc--CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhc-CCCCChhHHHHHHHHHHhCC
Q 037713 78 AYNQ--ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCG 154 (610)
Q Consensus 78 ~~~~--~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g 154 (610)
.... +.....-.++.+-+...-+-.++..+...++..++..+++..-.+++...... +...|...|..+++.-.+.|
T Consensus 173 sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg 252 (292)
T PF13929_consen 173 SMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESG 252 (292)
T ss_pred HHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcC
Q ss_pred ChHHHHHHHHh
Q 037713 155 LPNNARAVFDS 165 (610)
Q Consensus 155 ~~~~A~~~~~~ 165 (610)
+..-..++.++
T Consensus 253 D~~~~~kiI~~ 263 (292)
T PF13929_consen 253 DQEVMRKIIDD 263 (292)
T ss_pred CHHHHHHHhhC
No 363
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.93 E-value=1.1e+02 Score=26.82 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=63.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 037713 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 291 (610)
+++.++.++|+.-|.++.+.|.. . ...+. . -.........|+...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g-~-YpvLA-~--------------------------------mr~at~~a~kgdta~ 112 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG-S-YPVLA-R--------------------------------MRAATLLAQKGDTAA 112 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC-c-chHHH-H--------------------------------HHHHHHHhhcccHHH
Confidence 45677888888888888877654 1 10110 0 011222344566666
Q ss_pred HHHHHHhcCCCC--hhHH---HHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037713 292 AKDIFGRMRRKD--VVSW---TSI--IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 292 A~~~~~~~~~~~--~~~~---~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
|...|+++...+ +... ..| .-.+..+|-+++.....+.+...|-+.....-..|.-+-.+.|++..|.+.|..
T Consensus 113 AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 113 AVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 666666654311 1010 111 112345666666666666554443333333344555556667777777777777
Q ss_pred hHHh
Q 037713 365 MIED 368 (610)
Q Consensus 365 ~~~~ 368 (610)
+..+
T Consensus 193 ia~D 196 (221)
T COG4649 193 IAND 196 (221)
T ss_pred HHcc
Confidence 6654
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.46 E-value=56 Score=26.78 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 322 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+..+-+.......+.|+......-++||-+.+++..|.++|+-.+.+ ..+....|..+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45555666677788999999999999999999999999999988764 4444456666654 334455665
Q ss_pred CC
Q 037713 402 PF 403 (610)
Q Consensus 402 ~~ 403 (610)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.45 E-value=2.1e+02 Score=29.77 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHhC--CCCCCHHH
Q 037713 336 KPNEVTFV-GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL---SRSGHLDEAENLIKAM--PFEPDEPT 409 (610)
Q Consensus 336 ~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~~ 409 (610)
.|+..|+. .++.-+-+.|-..+|...+..+.. --+|+...|..+|..= ..+| +..+.++++.| .+-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 34444432 234444455555666666665544 2344555555555432 2233 55555555555 12245555
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|...+.--..+|..+.+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 5555554445555555555544443
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.45 E-value=1.4e+02 Score=30.31 Aligned_cols=52 Identities=6% Similarity=0.048 Sum_probs=34.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEV--TFVGLIYACS--HVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 367 (610)
.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3678888888888888876 555544 3344444444 35567788888887765
No 367
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.07 E-value=1.4e+02 Score=32.54 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH----------hHHHHHHHHHhccccHHHHHHHHHHHHHhC--CCC
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP----------LVLSSIVGACANFAVLELGKQIHGLVIALG--YES 271 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 271 (610)
+-..++..|-...+++..+++.+.+++. ||. +.|...++--.+.|+-++|....-.+++.. +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4455666777777788888888777664 332 234444544455677777776665555542 233
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT---FVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a 348 (610)
| +||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 D---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 D---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred c---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 3 45556643 22221 11233445556678888887765 4666543 3334433
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (610)
-.+ .++.-.++ .. +--.|-..++|.|.+++-.+.++-. ..+.+-.-..++.+|.+
T Consensus 333 aG~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 221 11111111 11 1122445567888888877766432 23445556778889999
Q ss_pred HHHHHhcCCCCCC
Q 037713 429 VANHLLSLKPEDP 441 (610)
Q Consensus 429 ~~~~~~~~~p~~~ 441 (610)
..++|.+++|+..
T Consensus 388 Aae~mfKLk~P~W 400 (1226)
T KOG4279|consen 388 AAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHhccCCcee
Confidence 9999999988754
No 368
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=37 Score=31.42 Aligned_cols=55 Identities=7% Similarity=-0.046 Sum_probs=44.2
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..+...|++-++++....++...|.+..+|..-+.+.+..=+.++|..-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3345678899999999999999999999999888888777777777777666643
No 369
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.39 E-value=69 Score=32.74 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------ChhHHHHHHHHH-----
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-------------DVVSWTSIIVGT----- 314 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~----- 314 (610)
.+++-.++++.+.+.| .+| +...-|+.|.+.+++++|..-+++-.+. .+.....++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4556666666666654 112 4445677788888888888777765431 122223333322
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPN---EVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
.++|.. .+..+++-+...|+.-. .++|+. -|++.=-++++...|+.+
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wqyv 195 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYC 195 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHH
Confidence 234443 56666666666665422 234432 244444556665555533
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.12 E-value=2.9e+02 Score=31.38 Aligned_cols=216 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHccCCCCC-------cchHHHHHHHHHcCCCc--hHHHHHHHHhHHCCCCCCChhhHHH-
Q 037713 41 PNTLIDAYGKCDLVQYAHHLLEEMPQRD-------HVSWASILTAYNQANLP--QKTISIFSTMLALDKLQPDHFVFAS- 110 (610)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~pd~~~~~~- 110 (610)
|..|+-.|...|..++|++++......+ ...+-.++.-+.+.+.. +-.++.-.+..... ..-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~-p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN-PEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC-chhheeeeecc
Q ss_pred -----------HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC-hHHHHHHHHhcCCCChhhHHHHH
Q 037713 111 -----------LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL-PNNARAVFDSIKLKNSVSWTAML 178 (610)
Q Consensus 111 -----------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~li 178 (610)
.+-.+......+.+...+++++...-.++....+.++..|++.=+ ......--++..+-+ +...+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~---~rekl 662 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT---VREKL 662 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh---HHHHH
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH
Q 037713 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258 (610)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 258 (610)
..+....+.=....++...+.....-..+++-+ +.|+.++|+.++-... ++++.|.
T Consensus 663 ~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L----------------------~d~~~A~ 718 (877)
T KOG2063|consen 663 LDFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHEL----------------------DDIDAAE 718 (877)
T ss_pred HHHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHh----------------------cchhHHH
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 259 QIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
.+....-+ ..+++...|-.++..|..
T Consensus 719 ~Yc~~~y~-~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 719 SYCLPQYE-SDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred HHHHHhcc-CCCcccHHHHHHHHHHhc
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.09 E-value=1.1e+02 Score=29.04 Aligned_cols=75 Identities=7% Similarity=0.039 Sum_probs=33.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
|.+++..++|.+++...-+--+..-+ ..+...-.-|-.|++.+....+.++-.......-..+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEk-lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEK-LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 56777777777777665444332222 1122222223334455555544444444443322222233444444443
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.75 E-value=42 Score=30.18 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (610)
|+..+|..++..+...|+.++|.+..++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333343334444444444444333333
No 373
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.34 E-value=1.9e+02 Score=30.64 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----------C--------
Q 037713 351 HVGLVGKGRKLFKSMIEDYGI----------TPSLQHYTCLLDLLSRSGHLDEAENLIKAM----------P-------- 402 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~-------- 402 (610)
+...++++...|...+..+.. +-.+.+.-.+.+++-..|+.+-|..++++. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 344556666666655543211 112333444455666777776666665443 1
Q ss_pred ----CCC-CHHHHHHH---HHHHHhcCchhHHHHHHHHHhcCCCC-CCcchHhHHHHhh-hhcchhHHHHHHHHH
Q 037713 403 ----FEP-DEPTWAAL---LSACKHHRNTEMGTRVANHLLSLKPE-DPSSYILLSNVYA-SAAMWQHVSKVRKLM 467 (610)
Q Consensus 403 ----~~p-~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 467 (610)
..| |...|.+| +....+.|-+.-|.++.+.+++++|. ||.....+++.|+ ++..|.=-.++++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 112 23333333 33356788899999999999999988 8888888888885 556666666666655
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.05 E-value=1.6e+02 Score=27.33 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--HHhc-CchhHHHHHHHHHhcCCCC
Q 037713 383 DLLSRSGHLDEAENLIKAM---PFEPDEPTWA---ALLSA--CKHH-RNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~---~ll~~--~~~~-g~~~~a~~~~~~~~~~~p~ 439 (610)
+.-+..+++.+|.++|++. .+..+..-|. -++.+ |.-. .+.-.+...+++-.+++|.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3345678899999999887 2222222232 12332 3333 5666778888888889986
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.17 E-value=10 Score=38.51 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=65.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEAENLIKAM-PFEPDE-PTWAALLSACKHHR 421 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g 421 (610)
-+......+.++.|..++.++++ +.||-..| ..=..++.+.+++..|+.=+.+. ...|.. ..|.-=..+|.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677888999999988876 46655444 33336778888888887655544 555542 23333345577778
Q ss_pred chhHHHHHHHHHhcCCCCCCc
Q 037713 422 NTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.+.+|...|+....+.|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 888899999988899998763
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.11 E-value=84 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 377
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=56.59 E-value=31 Score=26.12 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 037713 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 217 (610)
..+.++|.++++.++.++..+|.++..++-..|.
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3344555555555555555555555555544443
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.48 E-value=28 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=10.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 037713 311 IVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444445555555555555443
No 379
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.40 E-value=85 Score=23.87 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 037713 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190 (610)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 190 (610)
.+++..+.+.|+- +......+-.+-...|+.+.|+++++.++ +....|...+.++-+.|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4555556655532 22222222222224566677777777766 6666666666666666655444
No 380
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.26 E-value=3.7e+02 Score=31.06 Aligned_cols=257 Identities=9% Similarity=0.023 Sum_probs=151.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH
Q 037713 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238 (610)
Q Consensus 159 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 238 (610)
...+...+..+|...-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+... +|+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~d~ 698 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----PDP 698 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----CCH
Confidence 3455566667788777778888888777554455555555555544445555554443222222333344332 566
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037713 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318 (610)
Q Consensus 239 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 318 (610)
.+-...+.++...+..+ ...+. ... -.+|..+-...+.++.+.+..+. +......++...-...+.++...+
T Consensus 699 ~VR~~A~~aL~~~~~~~-~~~l~-~~L---~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 699 VVRAAALDVLRALRAGD-AALFA-AAL---GDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHHHHhhccCC-HHHHH-HHh---cCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhc
Confidence 66667777766543211 11122 222 24566666677777777665432 334455677777777777887777
Q ss_pred ChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 319 QAEE-TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 319 ~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
..+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++++.+.- ++...
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~ 842 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPA 842 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHH
Confidence 6543 4455555554 35677777888888888876655444444444 25566666677788887764 44454
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 398 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+..+--.|+...-...+.++...+....+...+..+++
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 44442356777777777777775444567777766665
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.07 E-value=1.9e+02 Score=27.54 Aligned_cols=158 Identities=14% Similarity=-0.008 Sum_probs=78.1
Q ss_pred cCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhH----HCCCCCCChhhHHHHHHHHhccCCc----
Q 037713 50 KCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTML----ALDKLQPDHFVFASLVKACGSLGAT---- 121 (610)
Q Consensus 50 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~pd~~~~~~ll~~~~~~~~~---- 121 (610)
+.+++++|.+++-.- ...+.+.|+...|-++-..|. +.+ .++|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~-~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSE-DPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-TTH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCCcchH
Confidence 345666666655431 223445555555544433332 233 555555555555554433221
Q ss_pred -HHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 122 -RLGKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 122 -~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
+-......+- +.| -.-|+.....+...|.+.|++.+|+.-|-.-..++...+..++.-+...|...++--.
T Consensus 70 ~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf----- 143 (260)
T PF04190_consen 70 KKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF----- 143 (260)
T ss_dssp HHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH-----
T ss_pred HHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH-----
Confidence 1122223333 222 2236778888999999999999999888655544444443344444444443333111
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 199 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
..-.+-.|...++...|...+....+.
T Consensus 144 ------i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 144 ------IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122344566778888888877776654
No 382
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.92 E-value=1.5e+02 Score=26.54 Aligned_cols=85 Identities=6% Similarity=-0.021 Sum_probs=46.6
Q ss_pred HHHHhCCChHHHHHHHHhcC-CCChh-----hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCChH
Q 037713 148 DMYAKCGLPNNARAVFDSIK-LKNSV-----SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL--WTALVSGLVQSRNEI 219 (610)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~m~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 219 (610)
..+..+|++++|..-++... .+... .--.|.......|.+++|.+.++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 44556666666666665443 22111 11224445566677777777776655553322 222234566777777
Q ss_pred HHHHHHHHHHHcC
Q 037713 220 DAFYSFIEMRREG 232 (610)
Q Consensus 220 ~A~~~~~~m~~~~ 232 (610)
+|..-|.+.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777766654
No 383
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.67 E-value=26 Score=36.56 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHH
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
.|+...|...+..... ..|-. +....|...+.+.|...+|-.++.+. .+ ...+.++..+.+++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4677777776665532 33321 23344566667777777888777654 22 334567778888888889999999
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
+.|+++++++|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999988877666654433
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.68 E-value=48 Score=30.38 Aligned_cols=56 Identities=4% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHhcCch-------hHHHHHHHHHhcCC--CC----CCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 416 ACKHHRNT-------EMGTRVANHLLSLK--PE----DPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 416 ~~~~~g~~-------~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
.|...|+. ..|.+.|+++.+.. |. ......+++.++.+.|++++|.+.+..+...+
T Consensus 127 lyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 127 LYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 35555553 34455555555332 22 23456688899999999999999999886543
No 385
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.41 E-value=1.5e+02 Score=31.11 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRRK--DV---VSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..|+.-|.+++++++|..++..|.=. .. .+.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677888999999999999888632 12 2334444444444444555555555544
No 386
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.39 E-value=2.4e+02 Score=28.34 Aligned_cols=125 Identities=12% Similarity=0.025 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHHHH
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL---VSGLV 213 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~ 213 (610)
|-.+.+.-.+-..+...|+.+.|.+++++..--=..++......+........+ -++--...|-.-|-++ |..+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~--rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC--RLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc--ccCCccccchHHHHHHHHHHHHHH
Confidence 556666677777778888887777776544200000000000000000000000 0000001133344443 56788
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh-ccccHHHHHHHHHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA-NFAVLELGKQIHGLV 264 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~ 264 (610)
+.|.+..|+++.+-+...+.. -|+......|+.++ +.+.++--..+.+..
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 899999999999999887754 47877777777765 445555555555443
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.37 E-value=16 Score=20.98 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=20.3
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877776666655443
No 388
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.15 E-value=20 Score=27.61 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 429 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+++.++.+|+|...-..++..+...|++++|.+.+-.+.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566677666666777777777777777666655543
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.88 E-value=98 Score=24.75 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=22.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHH
Q 037713 71 SWASILTAYNQANLPQKTISIFSTMLA 97 (610)
Q Consensus 71 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 97 (610)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888999999998888766
No 390
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.86 E-value=2.1e+02 Score=27.58 Aligned_cols=216 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCC-ChHHHHHHHccCCCCCcchHHHHHHHHHc
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD-LVQYAHHLLEEMPQRDHVSWASILTAYNQ 81 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 81 (610)
+..+...|.++....+...|.-- ..++..|..|.......+-.-+.+.| ...-|.++|..-...+. -|.+++.+-+
T Consensus 132 ~~k~Llflk~F~e~Er~KLA~~T-al~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~--i~~lis~Lrk 208 (412)
T KOG2297|consen 132 MRKFLLFLKLFEENERKKLAMLT-ALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD--INDLISSLRK 208 (412)
T ss_pred HHHHHHHHHccCHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc--HHHHHHHHHh
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC--------------------------------CcHHHHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG--------------------------------ATRLGKQVHA 129 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~--------------------------------~~~~a~~~~~ 129 (610)
.+--+.-+++ .+|+..+-...-..+...| .+++......
T Consensus 209 g~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VK 279 (412)
T KOG2297|consen 209 GKMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVK 279 (412)
T ss_pred cChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH---------------HHH
Q 037713 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM---------------EIF 194 (610)
Q Consensus 130 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~---------------~~~ 194 (610)
+-.+..--|+..+...+-+.....+.+.+-.++..+-.-+...+|.-|+.+++..|+.+-.+ +.|
T Consensus 280 ee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaF 359 (412)
T KOG2297|consen 280 EEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAF 359 (412)
T ss_pred HHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred hhCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 195 EQAP----VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 195 ~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
.++. +.++.+-.+++..|-.......-.-.+++|..
T Consensus 360 qkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 360 QKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.79 E-value=3.7e+02 Score=30.25 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=98.4
Q ss_pred hcCCHHHHHHHHHhcC----CCC-------hhHHHHHHHHH-HhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHH
Q 037713 285 KCSDIIAAKDIFGRMR----RKD-------VVSWTSIIVGT-AQHGQAEETLALYDEMVSA----GVKPNEVTFVGLIYA 348 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~----~~~-------~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a 348 (610)
-..++++|..+..+.. .++ ...|+++-... ...|++++|.++.+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4567777777776653 221 23466554333 3467888888888776553 122344555666667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHH---HHH--HHHHhcCCHHHHHH--HHHhC-----CCCC----CHHHHHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYT---CLL--DLLSRSGHLDEAEN--LIKAM-----PFEP----DEPTWAA 412 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li--~~~~~~g~~~~A~~--~~~~m-----~~~p----~~~~~~~ 412 (610)
..-.|++++|..+.....+. .-.-+..++. .+. ..+...|+...|.. .|... +-+| -..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788888888877665442 2222333332 222 23455664333322 22222 1112 2233444
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcC----CCCCCc---chHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSL----KPEDPS---SYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
++.++.+ .+.+..-....++. .|..-. .+..|+.++...|+.++|......+......
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 4444433 44444444443332 222111 2236788888889999998888887654443
No 392
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.66 E-value=47 Score=28.04 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 391 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+-...+++|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777777775 2333344455577899999999999999999999988888888888776643
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.49 E-value=30 Score=31.86 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=33.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCchhH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSA-CKHHRNTEM 425 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~g~~~~ 425 (610)
|.....++.|...+.+.+. +.|+. .-|+.=+-.+.+..+++.+..--.+. .+.||.+--..+++. ......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 3334444555554443332 34443 22333344444444444444332222 344443333323222 333444555
Q ss_pred HHHHHHHH
Q 037713 426 GTRVANHL 433 (610)
Q Consensus 426 a~~~~~~~ 433 (610)
|+..+.++
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 55555554
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.61 E-value=1.2e+02 Score=24.20 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=28.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 334 (610)
+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..+|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334556677777744444445567777765543 35666666666666665443
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.34 E-value=50 Score=29.67 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 402 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
...|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5679999999999999999999999999999999988
No 396
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.25 E-value=2.4e+02 Score=27.61 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=82.9
Q ss_pred CHHHHHHHHHhc-C-CCChhHHHHHHHHHHhcC-----ChHHHH--------HHHHHH-HHcCCCCC------HHHHHH-
Q 037713 288 DIIAAKDIFGRM-R-RKDVVSWTSIIVGTAQHG-----QAEETL--------ALYDEM-VSAGVKPN------EVTFVG- 344 (610)
Q Consensus 288 ~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~g-----~~~~A~--------~l~~~m-~~~g~~p~------~~t~~~- 344 (610)
++..+.++...+ . +++...|..++..+.... ..+... .++..+ .+.|..+. ...+..
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 456667777766 3 456677776665543321 111111 122222 22354443 222222
Q ss_pred HHHHHh-ccCCHHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037713 345 LIYACS-HVGLVGKGRKLFKSMIEDYGI---TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420 (610)
Q Consensus 345 ll~a~~-~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 420 (610)
++...+ ..+-.++|.+.|........- ..++.....+.....+.|..++-..+++...-.++...-..++.+.+..
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 233333 222367788888888773111 3456666777777888888777666666665556788888999999999
Q ss_pred CchhHHHHHHHHHhcC
Q 037713 421 RNTEMGTRVANHLLSL 436 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~ 436 (610)
.+.+...++++.++.-
T Consensus 215 ~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSN 230 (324)
T ss_dssp S-HHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHcCC
Confidence 9999999999998874
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.05 E-value=45 Score=24.80 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=30.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
...+.++|+..|+...+.-..|. -.++..++.+++..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888877766533332 24566777888888887777665
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.03 E-value=43 Score=31.84 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHh
Q 037713 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS 165 (610)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (610)
+.|...|.+.+|.++++..++.. +.+...+-.|+..++..|+--.|.+-++.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44556666666666666666554 45555566666666666665544444433
No 399
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.67 E-value=1.8e+02 Score=26.10 Aligned_cols=88 Identities=10% Similarity=0.022 Sum_probs=45.6
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCChHH
Q 037713 247 ACANFAVLELGKQIHGLVIALGYESC--LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS--WTSIIVGTAQHGQAEE 322 (610)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 322 (610)
.....++++.|...++.........+ ..+--.|.......|.+++|...++....++-.+ ...-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34455555555555554443211111 1112234445556667777777766666553222 3333455666677777
Q ss_pred HHHHHHHHHHcC
Q 037713 323 TLALYDEMVSAG 334 (610)
Q Consensus 323 A~~l~~~m~~~g 334 (610)
|..-|++..+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 777776666654
No 400
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.52 E-value=31 Score=22.32 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=12.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 401
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.41 E-value=3.5e+02 Score=29.27 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
....+.+...-.-.+...-.-++..|.+.|..+.+.++.+.+..+. -...-|..-+..+.++|+......+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333444433233345555666777777777777777776665431 12345556666667777776665555444
No 402
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.19 E-value=18 Score=29.95 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=26.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456777899999999999999986 56676654
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.33 E-value=29 Score=38.08 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
+.++++.+.+.+.-.--| . ++|..+.+.|..+-|+.+.+.=..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG----q----aiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG----Q----AIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc----H----HHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456666665544332211 1 34555566777776666644332221 23346788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 397 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
.-++.. |..+|..|......+|+.+.|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 777764 667788888888888888888888876543
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.57 E-value=3.4e+02 Score=28.33 Aligned_cols=234 Identities=8% Similarity=0.015 Sum_probs=106.4
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc------cHHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHH-
Q 037713 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFA------VLELGKQIHGLVIALG-Y-ESCLFISNAIVDMYAKCSDIIA- 291 (610)
Q Consensus 221 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~y~~~g~~~~- 291 (610)
...+|++..+.= |....+...|..|...- .+.....+++...+.+ . +.....|..+.-++.+.....+
T Consensus 301 ~~~v~ee~v~~l---~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 301 CCAVYEEAVKTL---PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 345555554432 55666666666664332 2334444555554432 2 2234556666666666554333
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcC-ChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHH--HHHHHHhH
Q 037713 292 AKDIFGRMRRKDVVSWTSIIVGTAQHG-QAE-ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-VGKG--RKLFKSMI 366 (610)
Q Consensus 292 A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a--~~~~~~~~ 366 (610)
|..+-.+....+...|-.-++...+.. +.. .-.++|......-..+-...|++.. .|+ ++.. ..++....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 333433444556666655555444221 111 1112222232221222233333332 111 1111 11112222
Q ss_pred HhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH--HhcCchhHHHHHHHHHhcCCCCCC
Q 037713 367 EDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAMP-F-EPDEPTWAALLSAC--KHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 367 ~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
+ -..|+. ..-+.+++-+.+.|-..+|...+.... . .|+...|..++.-- ...-+..-+..+++.+..-...++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 122333 333556777777888888888887772 2 23555566555441 112235556666666653222444
Q ss_pred cchHhHHHHhhhhcchhHHHHHH
Q 037713 442 SSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
..|......-...|..+.+-.++
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHH
Confidence 55544433333455555444443
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.51 E-value=1.1e+02 Score=25.18 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHHHh--cCCCCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 425 MGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 425 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
.+..+|+.|. +++...+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777887776 45556667888888888888999998888764
No 406
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.63 E-value=4.2e+02 Score=28.55 Aligned_cols=63 Identities=8% Similarity=-0.067 Sum_probs=35.6
Q ss_pred chHHHHHHHHhHHCCCCCCChhhHHHHH----HH-HhccCCcHHHHHHHHHHHh-------cCCCCChhHHHHHHHHHHh
Q 037713 85 PQKTISIFSTMLALDKLQPDHFVFASLV----KA-CGSLGATRLGKQVHACFVL-------SPFCDDDVVKSSLVDMYAK 152 (610)
Q Consensus 85 ~~~A~~~~~~m~~~~~~~pd~~~~~~ll----~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~ 152 (610)
...|.+.++.....| +...-..+. .+ .....+++.|...+..+.+ .| +......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 356777777777766 222222221 22 3455678888888887766 44 33345556666665
Q ss_pred CC
Q 037713 153 CG 154 (610)
Q Consensus 153 ~g 154 (610)
..
T Consensus 301 g~ 302 (552)
T KOG1550|consen 301 GL 302 (552)
T ss_pred CC
Confidence 43
No 407
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.38 E-value=2.3e+02 Score=25.40 Aligned_cols=173 Identities=10% Similarity=0.046 Sum_probs=84.2
Q ss_pred CCCChhhHHHHHHHHhcc----CCcHHHHHHHHHHHhcCCCCChh----HHHHHHHHHHhCCChHHHHHHHHhcCCCChh
Q 037713 101 LQPDHFVFASLVKACGSL----GATRLGKQVHACFVLSPFCDDDV----VKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172 (610)
Q Consensus 101 ~~pd~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 172 (610)
..+|...++.+++.+.+. +..+.+..+-.+....++.++-. ..-.=+..|-+.||+.+--.+|-...
T Consensus 4 m~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~----- 78 (233)
T PF14669_consen 4 MVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK----- 78 (233)
T ss_pred ccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH-----
Confidence 667777788877776543 34444455555555555444322 11222234444555544333332221
Q ss_pred hHHHHHHHHHhcCCHHH--------HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHH
Q 037713 173 SWTAMLSAYARSGRKKD--------AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244 (610)
Q Consensus 173 ~~~~li~~~~~~g~~~~--------A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l 244 (610)
.-+.++++ |+.+.++.+++-.+.|-....+-++.-..+++-+.| =...-.++
T Consensus 79 ---------~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~-----------LGRiGiS~ 138 (233)
T PF14669_consen 79 ---------MGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL-----------LGRIGISL 138 (233)
T ss_pred ---------hhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh-----------hhHHHHHH
Confidence 11222222 222333333334445555555544444443332221 11222345
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCC--------------CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 245 VGACANFAVLELGKQIHGLVIALGYE--------------SCLFISNAIVDMYAKCSDIIAAKDIFGR 298 (610)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (610)
+-.|.+..++.+++.++..+.+..+. +--.+.|.-...+.++|.+|.|..++++
T Consensus 139 m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 139 MYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 56677777788888877777665332 2223455555666666666666666653
No 408
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.85 E-value=29 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=24.0
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
..|.-..|..+|..|++.| -+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G-~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERG-NPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCC-CCCc--cHHHHHHHh
Confidence 3466678899999999998 7777 466776654
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.50 E-value=2.8e+02 Score=26.29 Aligned_cols=83 Identities=10% Similarity=0.109 Sum_probs=44.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36677888889999999999998887665444333332233322223332222 111112222 345
Q ss_pred ccCCHHHHHHHHHHhHHh
Q 037713 351 HVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~ 368 (610)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888777766654
No 410
>PRK10941 hypothetical protein; Provisional
Probab=44.43 E-value=1.4e+02 Score=28.49 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
.+.+-.+|.+.++++.|++..+.+ .+.|+ +.-+.--.-.|.+.|.+..|..-++..++..|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344566788889999999888887 45554 44466566668888999999999998888888877543
No 411
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.50 E-value=61 Score=24.90 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=15.0
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 037713 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214 (610)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 214 (610)
.+.+.+.++++.++.++..+|..+..++-.
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 344455555555555555555555555433
No 412
>PRK12798 chemotaxis protein; Reviewed
Probab=43.19 E-value=3.8e+02 Score=27.33 Aligned_cols=179 Identities=13% Similarity=0.183 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHhcCC----CChhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHH
Q 037713 286 CSDIIAAKDIFGRMRR----KDVVSWTSIIVGTA-QHGQAEETLALYDEMVSAGVKPN----EVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 356 (610)
.|+.++|.+.|..+.. +....+-+|+.+-. ...+..+|+++|+...-. .|. ....-.-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888999999988864 34556777776644 456789999999987653 343 223334455667889999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHH-HHHHHHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 037713 357 KGRKLFKSMIEDYGITPSLQHYTC-LLDLLSR---SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432 (610)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (610)
++..+-.....+|...|-...|.. ++..+.+ ....+.-..++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777776666665433322 3333333 334555566667764222366888888889999999999999999
Q ss_pred HhcCCCCCCcchHhHHHHhhhh-----cchhHHHHHHHHH
Q 037713 433 LLSLKPEDPSSYILLSNVYASA-----AMWQHVSKVRKLM 467 (610)
Q Consensus 433 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m 467 (610)
+..+... ...-...+..|... .+.+++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9887643 23444555555433 3355555554444
No 413
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.18 E-value=36 Score=31.14 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=36.2
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..+.|+.+.|.+++.+. ...| ....|--+...--+.|+.+.|-+.+++.++++|+|
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566666666666666 3333 35566666666667777777777777777776655
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.78 E-value=97 Score=20.41 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=20.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666777766666666666555543
No 415
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.38 E-value=1e+02 Score=23.35 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHH
Q 037713 22 VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKT 88 (610)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 88 (610)
...++..+.+.|+- +....-..-+...+.+.|.++++.++.+...+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34577777777653 2333333445567788899999999988888888888888877765544
No 416
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.25 E-value=3.9e+02 Score=27.25 Aligned_cols=201 Identities=10% Similarity=-0.022 Sum_probs=101.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCCch--HHHHHHHhhcCCChHHHHHHHccCCCCCc---chHHHHHHHHHcCCCchHH
Q 037713 14 ARHQIALTVKTLHAQIIKLGLHQYGPL--PNTLIDAYGKCDLVQYAHHLLEEMPQRDH---VSWASILTAYNQANLPQKT 88 (610)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A 88 (610)
...|+++.+ ..+++.|..|+... ..+.+...++.|+.+-+.-+++.-..++. ...+. +...+..|+.+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE-LHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH-HHHHHHCCCHHHH
Confidence 345666544 44556787665432 44566677788998877777765443322 22333 4445567777665
Q ss_pred HHHHHHhHHCCCCCC----ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhH--HHHHHHHHHhCCChHHHHHH
Q 037713 89 ISIFSTMLALDKLQP----DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV--KSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 89 ~~~~~~m~~~~~~~p----d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~ 162 (610)
..+++ .| ... +..-. +.+...+..|+. ++.+.+++.|..++... ..+.+...+..|+.+-+..+
T Consensus 85 ~~Ll~----~~-~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 85 EELLD----LG-KFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHH----cC-CcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44443 33 111 11112 223333444554 45556666776665332 23445566677887777766
Q ss_pred HHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 037713 163 FDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF---LWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 163 ~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 234 (610)
++.-... |..-++. +...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..
T Consensus 155 l~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad 227 (413)
T PHA02875 155 IDHKACLDIEDCCGCTP-LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGAD 227 (413)
T ss_pred HhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcC
Confidence 6654322 2222222 23334556776666666654443321 1123344344455543 33444455544
No 417
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=42.22 E-value=3.8e+02 Score=27.02 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=111.5
Q ss_pred cCCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c
Q 037713 286 CSDIIAAKDIFGRMRR-----K----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH----V 352 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~ 352 (610)
.++.+.|.+-+-...+ . +......++..|...++|+.--+...-+...... .......++.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5667777665554432 1 3345666777777788887666655554432111 22233333332221 1
Q ss_pred CCHHHHHHHHHHhHHh--cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HH
Q 037713 353 GLVGKGRKLFKSMIED--YGITP---SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL------------LS 415 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~--~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~ 415 (610)
.+.+.-..+.+.+..- ..+-. ....-..|...+-.+|++++|..++.+.+++ ||.++ ++
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHH
Confidence 1222222222222110 00100 1122344667788899999999999988643 33322 45
Q ss_pred HHHhcCchhHHHHHHHHHhcCC---CC----CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEE
Q 037713 416 ACKHHRNTEMGTRVANHLLSLK---PE----DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 487 (610)
.|...+++-.|.-+-+++.... |+ -...|..++.+....+.+=++.+.++.+-.-|..+...-.|+.+-..+
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 5778888888888877775322 21 123677888888888999999999988877766655334455443333
No 418
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=42.12 E-value=1.9e+02 Score=23.85 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCchhHHHHHHHHH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA-ALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
|-+--..+-.++..++.=.|..++|.++++..+.-++-...| .++..|+...+.++..++-++.
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333344555667777777788888888887775555544433 4667777776666665554443
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.44 E-value=53 Score=31.55 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
.-|+..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346788999999999999999999999998876666665444
No 420
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.93 E-value=1.1e+02 Score=32.27 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhH
Q 037713 72 WASILTAYNQANLPQKTISIFSTML 96 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~ 96 (610)
...++.-|.+.++.++|+.++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 4456777888888888888887774
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.70 E-value=1.4e+02 Score=24.60 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 147 (610)
+..+-++.....+ +.|+.......+++|.+.+++..|..+++-+... ..+...+|-.++
T Consensus 67 EvrkglN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3445556666666 7888888888888888888888888888866533 223233454443
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.46 E-value=4.2e+02 Score=27.05 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=5.9
Q ss_pred CCChHHHHHHHcc
Q 037713 51 CDLVQYAHHLLEE 63 (610)
Q Consensus 51 ~g~~~~A~~~f~~ 63 (610)
.|+.+-+..+++.
T Consensus 12 ~g~~~iv~~Ll~~ 24 (413)
T PHA02875 12 FGELDIARRLLDI 24 (413)
T ss_pred hCCHHHHHHHHHC
Confidence 4444444444443
No 423
>PRK09169 hypothetical protein; Validated
Probab=40.37 E-value=9e+02 Score=30.88 Aligned_cols=463 Identities=13% Similarity=0.031 Sum_probs=251.2
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCC-----CCCCchHHHHHHHhhcCCChHHHHHHHccC----CC-------CC
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGL-----HQYGPLPNTLIDAYGKCDLVQYAHHLLEEM----PQ-------RD 68 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~~-------~~ 68 (610)
.+..+.+.+++.-+-..+.+....+....+ ..+......++++++|-.+-..+...-+.+ .. -|
T Consensus 124 ~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~ 203 (2316)
T PRK09169 124 QLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMD 203 (2316)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcc
Confidence 455566666666555555554444443211 234556778888888876655544332222 11 14
Q ss_pred cchHHHHHHHHHcCCCchHHHHHH----HHhHHCCCC--CCChhhHHHHHHHHhccCCcHHHHHHHHHHHh---c--C--
Q 037713 69 HVSWASILTAYNQANLPQKTISIF----STMLALDKL--QPDHFVFASLVKACGSLGATRLGKQVHACFVL---S--P-- 135 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~--~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--g-- 135 (610)
......+++++++--+.......- ..+...+.. .-+......+++++++-.+-+.+.+.-..+-. . +
T Consensus 204 ~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr 283 (2316)
T PRK09169 204 AQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLR 283 (2316)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhh
Confidence 455666777887765554433332 222221101 23566788899999988776655444333221 1 1
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCCHHHHHH----HHhhCC--
Q 037713 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-----------LKNSVSWTAMLSAYARSGRKKDAME----IFEQAP-- 198 (610)
Q Consensus 136 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~-- 198 (610)
...|..-....+++++|..+-+.+...-..+- .-|..-....+++++|..+-+.+.. +-+++.
T Consensus 284 ~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~ 363 (2316)
T PRK09169 284 LALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARD 363 (2316)
T ss_pred hhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhC
Confidence 12344555667788888776554333322221 1255566677888888777664332 222221
Q ss_pred -----CCChhhHHHHHHHHHhCCChHH----HHHHHHHHHHc-CC-CCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH-
Q 037713 199 -----VRNLFLWTALVSGLVQSRNEID----AFYSFIEMRRE-GV-DIVDPLVLSSIVGACANFAVLELGKQIHGLVIA- 266 (610)
Q Consensus 199 -----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 266 (610)
.-|..-....+.++.+-+.-+. |..+...+... +. ..-|+.-.+.++.+|++.+.-+.+......+..
T Consensus 364 ~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~r 443 (2316)
T PRK09169 364 AGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAAR 443 (2316)
T ss_pred hhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 1144556667778887765432 33343333332 11 115778888999999988765544333222211
Q ss_pred --h----CCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcCC-------CChhHHHHHHHHHHhcCChHHHHH----
Q 037713 267 --L----GYESCLFISNAIVDMYAKCSDIIA----AKDIFGRMRR-------KDVVSWTSIIVGTAQHGQAEETLA---- 325 (610)
Q Consensus 267 --~----~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~---- 325 (610)
. .-..+..-....+.+++|.++.+. |..+...+.. -+..-....+.++++-++.+.+..
T Consensus 444 l~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~a 523 (2316)
T PRK09169 444 LAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEA 523 (2316)
T ss_pred HhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 1 112345566677888888776542 3334444322 245567778888888887655433
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHH----HHHHHhHHhc--CCCCCHHHHHHHHHHHHhcCCHHH---
Q 037713 326 LYDEMVSA---GVKPNEVTFVGLIYACSHVGLVGKGR----KLFKSMIEDY--GITPSLQHYTCLLDLLSRSGHLDE--- 393 (610)
Q Consensus 326 l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~--- 393 (610)
+...+... --.-|..-+.+.+.++++-.+.+... .+...+..+- --..+.......+.+++|-+.-..
T Consensus 524 LA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~ 603 (2316)
T PRK09169 524 LADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRA 603 (2316)
T ss_pred HHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHH
Confidence 33222221 12335666788999999987744332 2333322210 122355677888889988776432
Q ss_pred -HHHHHHhC----C--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc---CCC-----CCCcchHhHHHHhhhhcchh
Q 037713 394 -AENLIKAM----P--FEPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKP-----EDPSSYILLSNVYASAAMWQ 458 (610)
Q Consensus 394 -A~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~ 458 (610)
|..+.... + -.-|..-+..++.++++-.+.+........+-+ .++ -++.....+.+++++-.+.+
T Consensus 604 Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~ 683 (2316)
T PRK09169 604 AAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEA 683 (2316)
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcH
Confidence 33344333 1 123667788899999998877765544443321 111 13344556667777766655
Q ss_pred HHHHHHHHH
Q 037713 459 HVSKVRKLM 467 (610)
Q Consensus 459 ~a~~~~~~m 467 (610)
.+.+....+
T Consensus 684 ~c~~Aa~aL 692 (2316)
T PRK09169 684 ACRAAALAL 692 (2316)
T ss_pred HHHHHHHHH
Confidence 444443333
No 424
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.23 E-value=2.1e+02 Score=23.45 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHh-------cCCCCCCcchH----hHHHHhhhhcchhHHHHHHHHH
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLL-------SLKPEDPSSYI----LLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 467 (610)
...+..|-.++...|++++++.-.++.+ +++.+.-..|. .-+.++...|+.++|.+.|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444555556666666666555544443 45554333333 3344566778888888877654
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=3.8e+02 Score=26.30 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCCHHHHHHHHHH-HH----hcCCHHHHHHHHHhCCCC---CCHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIED---YGITPSLQHYTCLLDL-LS----RSGHLDEAENLIKAMPFE---PDEP 408 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~-~~----~~g~~~~A~~~~~~m~~~---p~~~ 408 (610)
..+.....-|++.|+.+.|.+.+....++ .|.+.|+..+..=+.. |. -...+++|..++++-+.- .-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44555666777777777777776654432 2445555443332222 11 223455666666665311 1122
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+|..+- |....++.+|-.+|-..+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 332221 3445566666666655543
No 426
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.51 E-value=74 Score=19.48 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCchhHHHHH
Q 037713 411 AALLSACKHHRNTEMGTRV 429 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~ 429 (610)
..+...+-..|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445556666666666
No 427
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=39.42 E-value=4.4e+02 Score=27.05 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR 301 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~ 301 (610)
+-...+.+..+.|+...+.-+...|..
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 444556666667776666666665554
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.18 E-value=83 Score=22.10 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
..+|.++...|++++|.++.+.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555666666555555544
No 429
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.17 E-value=5.2e+02 Score=27.82 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=78.3
Q ss_pred HHHHHHHHhhCCCC-ChhhHHHHHHH-----HHhCCChHHHHHHHHHHHH-------cCCCCCCHhHHHHHHHHHhccc-
Q 037713 187 KKDAMEIFEQAPVR-NLFLWTALVSG-----LVQSRNEIDAFYSFIEMRR-------EGVDIVDPLVLSSIVGACANFA- 252 (610)
Q Consensus 187 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~p~~~t~~~ll~~~~~~~- 252 (610)
...|.+.++..... ++..-..+... +....+.+.|+.+|+.+.+ .+. +.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHHHHHHhcCCC
Confidence 44566666654433 33322222222 3345667777777777655 331 122333444444322
Q ss_pred ----cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----hcCCh
Q 037713 253 ----VLELGKQIHGLVIALGYESCLFISNAIVDMYAKC---SDIIAAKDIFGRMRRK-DVVSWTSIIVGTA----QHGQA 320 (610)
Q Consensus 253 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~ 320 (610)
+.+.|..++....+.|.+. ... .|..+|... .+...|.+.|....+. .+.+.-.+...|. ...+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~-a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPD-AQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCch-HHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 4556677777666666332 221 122222221 3456666666666543 2222222222221 22355
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 321 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
..|..++++.-+.| .|-..--...+..+.. +.++.+.-.+..+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 66677777666665 3332222233333333 45554444444443
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.70 E-value=50 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
.-.+|.+|.+.|++++|.++..++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567888888888888888877754
No 431
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=38.54 E-value=4.6e+02 Score=26.96 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 379 TCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
..|+.-|...|++.+|...++++ |+-...+.+.+++.+.-+.|+-+.-+.+++..+.-.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45777788899999999999988 444457788888888888888777777777666543
No 432
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=1.6e+02 Score=28.76 Aligned_cols=85 Identities=12% Similarity=0.041 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 382 LDLLSRSGHLDEAENLIKAM-P---FEP--DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
.+-|.+..++..|...|.+- . -.| +.+.|+.-..+-...|++..++.=..+++..+|.+..+|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34577888888888888765 1 123 35667776666677889999999999999999999888888888888888
Q ss_pred chhHHHHHHHH
Q 037713 456 MWQHVSKVRKL 466 (610)
Q Consensus 456 ~~~~a~~~~~~ 466 (610)
++++|....+.
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 86666554443
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.89 E-value=65 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 234 (610)
-||..|...++.|++++|+.++++.++.|+.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4678889999999999999999999998876
No 434
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=37.46 E-value=29 Score=24.57 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=19.6
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChh
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHF 106 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~ 106 (610)
+=+++.|+..|.++...|.++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3478899999999988776777754
No 435
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.41 E-value=7.2e+02 Score=28.88 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHhcCCCCh
Q 037713 274 FISNAIVDMYAKCS--DIIAAKDIFGRMRRKDV 304 (610)
Q Consensus 274 ~~~~~li~~y~~~g--~~~~A~~~~~~~~~~~~ 304 (610)
.....++.+|++.+ ++++|+....++.+.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~ 845 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREEDP 845 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhcCh
Confidence 34456777777777 77777777777765533
No 436
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.45 E-value=1.4e+02 Score=30.53 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=29.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 398 IKAMPFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 398 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
|...++.|. ..+..+-+..+.+++++..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333355554 3445666777889999999999999999999854
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.17 E-value=2.1e+02 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=19.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 037713 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 414 (610)
+-.|.+.|.+++|.+++++.--.|+......-+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 445667777777777777762245544443333
No 438
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=36.05 E-value=21 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=17.6
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChh
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHF 106 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~ 106 (610)
.-+++.|+..|..+...|.++|+.+
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHhc
Confidence 3478899999999988887777764
No 439
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.74 E-value=3.6e+02 Score=26.08 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
.-...+..+...|++..|++++.+..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334556667778888888887777654
No 440
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.42 E-value=1.8e+02 Score=31.38 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCCHH------HHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 309 SIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVG------KGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
++..+|..+|++..+.++++..... |-+.=...||..|+...+.|.++ .+.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777777777777777777777653 22222345666667777777643 233333332 34556666666
Q ss_pred HHHH
Q 037713 381 LLDL 384 (610)
Q Consensus 381 li~~ 384 (610)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6654
No 441
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=35.24 E-value=1.2e+02 Score=23.17 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=15.6
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 037713 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216 (610)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 216 (610)
.+.++|..+++.++.++..+|.++.+++-..|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34445555555555555555555544444433
No 442
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.18 E-value=1.5e+02 Score=31.76 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred HHHHHhhcCCChHHHHHHHccCCCC------CcchHHHHHHHHHcCCCch------HHHHHHHHhHHCCCCCCChhhHHH
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMPQR------DHVSWASILTAYNQANLPQ------KTISIFSTMLALDKLQPDHFVFAS 110 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~pd~~~~~~ 110 (610)
+|+.+|...|++..+.++++..... =...+|..|+.+.+.|.++ .|-+++++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHHH
Confidence 6777777778877777777765421 2345777777777777653 3334444433 3447777777
Q ss_pred HHHHHhccCCcHHHHHHHHHHH
Q 037713 111 LVKACGSLGATRLGKQVHACFV 132 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~ 132 (610)
++.+....-+-..++.++..++
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHH
Confidence 7766544333334444444333
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.89 E-value=92 Score=24.01 Aligned_cols=52 Identities=2% Similarity=0.003 Sum_probs=32.9
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCC---------CcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPED---------PSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
..+.|++..|.+.+.+.+...... ..+...++.+....|++++|...+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455677777777666665332111 1233456777788899998888877764
No 444
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=6.7e+02 Score=27.74 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=61.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
++..-|+-++|-.+.++|.... .|-. .-..++..+|+-.|+.....+++.-.+. ....|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3445566667777777776542 2111 1123455577777777766666666554 344455555555555555566
Q ss_pred HHHHHHHHHhC--CCCCCHHH--HHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 391 LDEAENLIKAM--PFEPDEPT--WAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 391 ~~~A~~~~~~m--~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
.+....+.+-+ ...|-... -.+|.-+|+-.|+ .+|+.+++-|..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 66555555444 22222211 1123333444443 556666665554
No 445
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.77 E-value=3.9e+02 Score=24.74 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=8.9
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 037713 345 LIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~ 364 (610)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33444444444444444443
No 446
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=5e+02 Score=25.52 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCH----H
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRK--------DVVSWTSIIV-GTAQHGQAEETLALYDEMVSAGVKPNE----V 340 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 340 (610)
...-.....|++-|+.+.|.+.+...-++ |++.+..-+. -|..+.-..+-++-.+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34455667788888888888888766543 4443333222 233344455666666777777765543 3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+|..+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444442 4455677777777766554
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.06 E-value=71 Score=30.61 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHh
Q 037713 385 LSRSGHLDEAENLIKAM-PFEPDEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 446 (610)
..+.|+.++|..+|+.. ...|+.. ...-+..-.-.++++-+|.++|-+++.+.|.+..+...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34788888898888876 5555432 22233333445677888888888888888887665443
No 448
>PF15161 Neuropep_like: Neuropeptide-like
Probab=31.81 E-value=26 Score=23.52 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=11.8
Q ss_pred cccccCcchHHHHHHhhh
Q 037713 566 NLRVCGDCHIVMKMISRI 583 (610)
Q Consensus 566 ~l~~~~~~~~~~~~~s~~ 583 (610)
.-|-|.|||.+. |+.+.
T Consensus 12 esRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCchhhHHHH-HHHHH
Confidence 456799999876 55443
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.73 E-value=4.3e+02 Score=24.64 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 292 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
+..+|+-..+|.+.....|+..+. .+++++|.+++.++-+.|..|... .+++.+++
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 344555555677777777776654 567889999999988888887653 23444444
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.19 E-value=5.8e+02 Score=25.95 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR------KDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..+.-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|......-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788899999999999999988553 1234455556555566777776666665554
No 451
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.10 E-value=4.4e+02 Score=24.57 Aligned_cols=154 Identities=14% Similarity=0.208 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
+..|.+.-++.-|-..++++.+|= .+-.+ +--|.+..+..---++.+-....++.-+......++ +...|++.+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEPI-QSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEPI-QSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhhH-HhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Confidence 445555555655555555555541 11111 122333333332333333344455555555554444 44678888888
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
..++.-...+|... +..+|+-.. .|.+.....++..|.. +++++|.+.+.++.+++-+
T Consensus 213 NnLQst~~g~g~Vn--------------------~enVfKv~d-~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 213 NNLQSTVNGFGLVN--------------------QENVFKVCD-EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYS 270 (333)
T ss_pred HHHHHHhccccccc--------------------hhhhhhccC-CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCC
Confidence 77776655433221 223333332 5677777777766653 5678888888887766532
Q ss_pred CCcchHhHHHHhhhhcchhHHHH
Q 037713 440 DPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
. -..+.+.+.-..+++-++.
T Consensus 271 p---~Dii~~~FRv~K~~~~~E~ 290 (333)
T KOG0991|consen 271 P---EDIITTLFRVVKNMDVAES 290 (333)
T ss_pred H---HHHHHHHHHHHHhccHHHH
Confidence 1 1233444444444443333
No 452
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.93 E-value=5.1e+02 Score=25.19 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc-----HHHHHHHHHHHHHhCC
Q 037713 203 FLWTALVSGLVQ---SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-----LELGKQIHGLVIALGY 269 (610)
Q Consensus 203 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 269 (610)
..+--+|+++.+ -.+++.|+-++-+|.+.|.. |....-..++-++-.-|. +..|...++.....|.
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GED-p~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVD-PLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334455677655 47899999999999999976 666666666666655552 3334444444444443
No 453
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.83 E-value=8.3e+02 Score=27.66 Aligned_cols=214 Identities=13% Similarity=0.014 Sum_probs=104.8
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchh-------HHHHHHH-HHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHH
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLF-------ISNAIVD-MYAKCSDIIAAKDIFGRMRR--------KDVVSWTSIIVG 313 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~ 313 (610)
....+++|..+..++...-..|+.. .+++|-. .....|+++.|.++-+.... ..++.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4455666666666555442222211 2222211 12235777777766554432 356777788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HH--HHHHhccCC--HHHHHHHHHHhHHhcCC-C----CCHHHHHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFV---GL--IYACSHVGL--VGKGRKLFKSMIEDYGI-T----PSLQHYTCL 381 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~l--l~a~~~~g~--~~~a~~~~~~~~~~~~~-~----~~~~~~~~l 381 (610)
..-.|++++|..+.++..+.--+-|...|. .+ ...+...|. ..+....|......+.. . +-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888999999998877665432222332222 22 123445563 23333333333222111 1 122444555
Q ss_pred HHHHHhcCCHHHHHHHHHhC-----CCCCCHH--H--HHHHHHHHHhcCchhHHHHHHHHHhcCC--CCCCcchHh---H
Q 037713 382 LDLLSRSGHLDEAENLIKAM-----PFEPDEP--T--WAALLSACKHHRNTEMGTRVANHLLSLK--PEDPSSYIL---L 447 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-----~~~p~~~--~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~---l 447 (610)
..++.+ ++.+..-...- ...|... - +..|.......|+.++|.....++..+- +.-...|.. .
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555 33333222211 1122221 1 2255666788999999999888876433 211122221 2
Q ss_pred HH--HhhhhcchhHHHHHHHH
Q 037713 448 SN--VYASAAMWQHVSKVRKL 466 (610)
Q Consensus 448 ~~--~~~~~g~~~~a~~~~~~ 466 (610)
+. .-...|+.+++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 22355777777665444
No 454
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.62 E-value=1.8e+02 Score=22.35 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCc
Q 037713 22 VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85 (610)
Q Consensus 22 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 85 (610)
...++..+...|+-. ..-.-...+..-+.+.+.++++.++.+...+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gvlt----~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILT----DSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 345667777776532 222333334556778888888888888888888888888665543
No 455
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=30.24 E-value=23 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.538 Sum_probs=17.2
Q ss_pred eeEEEeCCCccccccCcccccC
Q 037713 586 REIVVRDATRYHHFKDGKCSCN 607 (610)
Q Consensus 586 ~~~~~~d~~~~h~~~~g~csc~ 607 (610)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677899999999999986643
No 456
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=30.00 E-value=3.5e+02 Score=23.03 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037713 303 DVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 351 (610)
+..+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33455555555544333 22344555555555555555555555555544
No 457
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.63 E-value=6.4e+02 Score=25.93 Aligned_cols=121 Identities=9% Similarity=0.059 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 351 (610)
+..+-..-+.++++.|..+..-.+-.-....|...-..-+.+....|. .+|...+...... |+..+...+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHh
Confidence 344444444444444443222222222334566666666666677776 5666665553332 222222223323322
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (610)
.|. +++...+....++ +. +-...+.++++.|+...+.-+++.|..
T Consensus 236 ~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 236 AGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred CCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 233 3566666555542 22 455677778888888888778877753
No 458
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=29.61 E-value=1.5e+02 Score=29.89 Aligned_cols=19 Identities=26% Similarity=0.031 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 037713 380 CLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~ 398 (610)
-|+-+|.+.++.+-|+.-.
T Consensus 233 klv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHhhhhcCCCchHHHHH
Confidence 3445555566655555443
No 459
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.08 E-value=3e+02 Score=22.70 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHHHhc--CCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 426 GTRVANHLLS--LKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 426 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
...+|..|.. ++...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566766653 444556677788888888888888888875
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.77 E-value=4.7e+02 Score=24.18 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
.+++++|.+.+..-.-. ...-.-++.++...|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|..+-+..
T Consensus 91 ~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred hHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 45566665555332111 0111235666666677776766666543221111 112222222 3345666666554443
No 461
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.72 E-value=1.7e+02 Score=27.78 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+-.++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3344588889999999999999999999988788888899999999888887777543
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.40 E-value=9.2e+02 Score=27.39 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=88.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
....||+++.|++.-..+. |...|..|+..-...|+.+-|...|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4557899999988766654 566899999999999999999999987764 22333345567888887776
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
...+.. ..|... ..+..+| .|+.++=.++++..+..|-. |. .-..+|.-++|.++.++.-.
T Consensus 721 ~~iae~----r~D~~~-~~qnalY--l~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEI----RNDATG-QFQNALY--LGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHh----hhhhHH-HHHHHHH--hccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 555533 223211 1111222 68899999999888654422 21 13467888999999888764
No 463
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.04 E-value=1.1e+02 Score=28.10 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=49.9
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
..+.++.+.+.+++.+++++-|.....|..++..-.++|+.+.|.+.++...+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999988866444
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.93 E-value=2.5e+02 Score=24.56 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=40.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 330 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+...|++++..-. .++..+...+..-.|.++++.+.+. +...+..|-..-++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556777665444 3445555556666788888888775 556666665666677888887643
No 465
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.87 E-value=6.5e+02 Score=25.50 Aligned_cols=55 Identities=5% Similarity=-0.085 Sum_probs=37.7
Q ss_pred HHhccCCcHHHHHHHHHHHhcCCCCChh--HHHHHHHHHHh--CCChHHHHHHHHhcCCC
Q 037713 114 ACGSLGATRLGKQVHACFVLSPFCDDDV--VKSSLVDMYAK--CGLPNNARAVFDSIKLK 169 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 169 (610)
.+.+.+++..|.+++..+... ++++.. .+..+..+|.. .-++++|.+.|+.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778899999999988886 555544 44555555544 45677888888776644
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.86 E-value=3.3e+02 Score=23.09 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 326 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
+...+.+.|++++..-. .++..+.+.+..-.|.++++.+.+. +...+..|-..-++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCEE
Confidence 33445566666554332 3555666666667777777777664 44444555455556677777643
No 467
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.59 E-value=2.8e+02 Score=21.20 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHHHHhhhhcchh-HHHHHHHHH
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVYASAAMWQ-HVSKVRKLM 467 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 467 (610)
|...-..+...+...|+++.|++.+-.+++.++. +...-..|+.++...|.-+ .+.+.+.++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455666777788888888888888888877654 3455567777777766643 344444433
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.56 E-value=1.8e+02 Score=19.07 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=18.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 037713 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245 (610)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 245 (610)
..+.|-..++..++++|.+.|+. .++..+..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~-is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFR-ISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcc-cCHHHHHHHH
Confidence 34455555666666666666665 4544444443
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.11 E-value=2.7e+02 Score=24.40 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC
Q 037713 74 SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119 (610)
Q Consensus 74 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 119 (610)
.++..+...++.-.|.++++.+.+.+ ..++..|.-..|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCC
Confidence 33344433444444555555555444 3344444333334443333
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.89 E-value=2.5e+02 Score=26.40 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.4
Q ss_pred cCCHHHHHHHHH
Q 037713 352 VGLVGKGRKLFK 363 (610)
Q Consensus 352 ~g~~~~a~~~~~ 363 (610)
.|++++|.++|+
T Consensus 191 ~g~~~~A~~~l~ 202 (247)
T PF11817_consen 191 LGDYDKALKLLE 202 (247)
T ss_pred CCCHHHHHHHHH
Confidence 333333333333
No 471
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.77 E-value=78 Score=23.53 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHCCcccCCccc
Q 037713 500 KDEIFELLTELDAEMKRRGYVPDTSSV 526 (610)
Q Consensus 500 ~~~~~~~~~~l~~~m~~~g~~p~~~~~ 526 (610)
..++.+.+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345677888888899999999997643
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.70 E-value=3.4e+02 Score=22.99 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 251 (610)
.-..++..+.+.+.+-.|.++|+++.+.+.. .+..|.-..|..+...
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~-islaTVYr~L~~l~e~ 68 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPG-ISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC-CCHhHHHHHHHHHHHC
Confidence 3345566666666667777777777776654 4444444444444333
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.62 E-value=3.3e+02 Score=29.95 Aligned_cols=27 Identities=4% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
+-..++-.|....+++..+++.+.++.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 444555566666666666666666655
No 474
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.67 E-value=1.9e+02 Score=20.58 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 301 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
.++...++.++..++...-.++++..+.+....|. .+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455566666666666666677777777666654 24555555444443
No 475
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=25.27 E-value=1.8e+02 Score=22.61 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=10.0
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHH
Q 037713 188 KDAMEIFEQAPVRNLFLWTALVSG 211 (610)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~li~~ 211 (610)
++|.++++.++.++..++..++.+
T Consensus 54 ~qAr~Lld~l~~KG~~A~~~F~~~ 77 (94)
T cd08329 54 LQARELIDTVLVKGNAAAEVFRNC 77 (94)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444444444444443333333333
No 476
>PRK02287 hypothetical protein; Provisional
Probab=25.12 E-value=4.5e+02 Score=23.07 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCchhHHHHHHHHHh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW-AALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
..+..++..++.=.|..++|.++++.....++-... ..++..|++..+.++..++-++.+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 345556666666677777777777766443333222 245666666666665555544433
No 477
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.94 E-value=4.6e+02 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-----------CCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAP-----------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
..|++.++-.|++..|+++++.+. .-.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666665555433 2234556666677777788888887777654
No 478
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=24.81 E-value=1.1e+02 Score=29.43 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=34.5
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
-+.|+.++|..+|+.... +.|+ +....-+........++-+|-+.+-+. .+.|.
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 478999999999998876 3443 444444444444455666677766555 55553
No 479
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.78 E-value=3.4e+02 Score=20.79 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=10.7
Q ss_pred HHHhccCCHHHHHHHHHHhHH
Q 037713 347 YACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~ 367 (610)
......|..++|.+.+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334445555555555555543
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.52 E-value=4.5e+02 Score=24.67 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCCChh--hHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 188 KDAMEIFEQAPVRNLF--LWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 188 ~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+.|...|......-.. .--.|..-|...|++++|+++|+.+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3555555554433222 22245566777888888888887763
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.40 E-value=7e+02 Score=24.34 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----------cCCHHH
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----------SGHLDE 393 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~ 393 (610)
.++++.|.+.++.|.-..|.-+.-.+++.=.+...+.+++.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 567788888888888888877777777777888888888887653 2224444443332 466666
Q ss_pred HHHHHHhC
Q 037713 394 AENLIKAM 401 (610)
Q Consensus 394 A~~~~~~m 401 (610)
-.++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666664
No 482
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.29 E-value=3.8e+02 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=11.5
Q ss_pred HHHHHHhCCChHHHHHHHHhcCC
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKL 168 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~ 168 (610)
++.-|...|++++|.+.+.++..
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhCC
Confidence 34444455555555555555443
No 483
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.18 E-value=7.7e+02 Score=24.70 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=32.9
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHH----HHHHhccccHHHHHHHHHHHHHhC
Q 037713 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI----VGACANFAVLELGKQIHGLVIALG 268 (610)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~~ 268 (610)
+.+.++..-|......|.+..++ .=..||.++ +.-..+.+..+++.+..-++++.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~-rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQ-RLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 45566777777777777666655 444455444 122235566666666666666654
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.17 E-value=1.9e+02 Score=23.07 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=21.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 354 (610)
..+...+..-.|.++++.+.+.+..++..|.-..|..+...|.
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333344444555555555555555555554444554444443
No 485
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.16 E-value=53 Score=17.08 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=8.3
Q ss_pred CcchHHHHHHhh
Q 037713 571 GDCHIVMKMISR 582 (610)
Q Consensus 571 ~~~~~~~~~~s~ 582 (610)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888773
No 486
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=23.12 E-value=2.3e+02 Score=21.30 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=12.5
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 037713 185 GRKKDAMEIFEQAPVRNLFLWTALVSGL 212 (610)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~ 212 (610)
-..++|.++++.++.++..++..+..++
T Consensus 43 T~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 43 TNQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3344555555544444444444443333
No 487
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.72 E-value=3.1e+02 Score=29.21 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCCC--HHH
Q 037713 336 KPNEVTFVGLIYACSHVG--LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHLDEAENLIKAM-PFEPD--EPT 409 (610)
Q Consensus 336 ~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p~--~~~ 409 (610)
.|+..|..+++.-....- ..+-|-.++..|.+ .+.|--.+.| +...|.| .|+...|...+... ..+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 466666666654443322 23345555555533 3333222211 2333443 68888888877766 33442 233
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...|.....+.|-...|-.++.+.+.+.-..|-++..++++|....+.+.|.+.++...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4455666677778888999999999888778889999999999999999999988776543
No 488
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=22.49 E-value=64 Score=25.66 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCcccCCccc
Q 037713 506 LLTELDAEMKRRGYVPDTSSV 526 (610)
Q Consensus 506 ~~~~l~~~m~~~g~~p~~~~~ 526 (610)
-=.-+.++|..+||.|+..+.
T Consensus 53 yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 53 YHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHcCCCCChhhc
Confidence 334578899999999999774
No 489
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.19 E-value=5.1e+02 Score=26.49 Aligned_cols=57 Identities=4% Similarity=0.073 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR-----------KDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
....|+..++-.|++..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888888877652 134456667777888888888888887753
No 490
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.93 E-value=8.9e+02 Score=26.34 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|--.|....+.+.|.++++++.+.+|.++..-..+..+...-|+-++|..+......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 444444456666777777777777777777666666666666677777777766665544
No 491
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.81 E-value=1.3e+02 Score=21.52 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=17.6
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCC
Q 037713 67 RDHVSWASILTAYNQANLPQKTISIFSTMLALD 99 (610)
Q Consensus 67 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 99 (610)
|....++.++..+++..-.++++..+.++...|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445555555555555555555555555555
No 492
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=7.9e+02 Score=24.34 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM--------PFEPDEPTWA 411 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~ 411 (610)
.++...-+.++.++|.++++++.++...... ...-..+...+...|++.++.+++++. ++.|+..+-.
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHHH--HHhcCchhHHHHHHHHHhc
Q 037713 412 ALLSA--CKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 412 ~ll~~--~~~~g~~~~a~~~~~~~~~ 435 (610)
-.+++ |...|++...-+..-+-+.
T Consensus 160 Y~lssqYyk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYRHALLYLG 185 (380)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhc
No 493
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.72 E-value=1e+03 Score=25.66 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=20.5
Q ss_pred cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChH
Q 037713 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157 (610)
Q Consensus 118 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 157 (610)
.|++..+.+....+ ..|..+-..+.+.+.++|-++
T Consensus 310 ~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccc
Confidence 47777777766544 234456667777777777776
No 494
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=1.3e+03 Score=26.66 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
|..++..-..-....|.+..|.+++.++.+..+-.++...|-.+++.+...|.-..|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 344444444444455677777777777777666677777777777766666654333
No 495
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.46 E-value=9.6e+02 Score=25.17 Aligned_cols=286 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC------hHHHHHHHHhcCCC
Q 037713 96 LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL------PNNARAVFDSIKLK 169 (610)
Q Consensus 96 ~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~ 169 (610)
+..+ ...........-..-...+.++...+.+..+...|.....+.+|.-+..|.+.|. .++-..+=.....+
T Consensus 9 ktq~-~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~ 87 (696)
T KOG2471|consen 9 KTQA-GEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAP 87 (696)
T ss_pred cccc-ccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccc
Q ss_pred -----------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 170 -----------NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR--------NLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 170 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
+.+.+....-+|........|+++-.....+ -..........++...+.++|+.++.-+.+
T Consensus 88 ~~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~ 167 (696)
T KOG2471|consen 88 GDVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE 167 (696)
T ss_pred cchhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCC-------------------------------CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 037713 231 EGVD-------------------------------IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279 (610)
Q Consensus 231 ~~~~-------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (610)
.--. .|....-..-..++.+..++..++.-.+.+....- .+....-.-
T Consensus 168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LK 246 (696)
T KOG2471|consen 168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLK 246 (696)
T ss_pred HHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCCH-
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRK------------DVVSWTSIIVGTAQHGQAEETLALYDEMVS-------AGVKPNE- 339 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~- 339 (610)
-..+.-.|++.+|.+++...--. .-..||.|...+.+.|.+.-+..+|.+..+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Q ss_pred ----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 340 ----------VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 340 ----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
.+||.=+ .+.+.|++-.|.+.|..... -+..++..|-.|..+|.
T Consensus 327 ~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
No 496
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.45 E-value=2.1e+03 Score=29.28 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+.|+-=.....+.|+.++|.+.|..+
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~A 2838 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAA 2838 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHH
Confidence 33444444556777777777777655
No 497
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.45 E-value=25 Score=34.22 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=69.4
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCC
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 497 (610)
...|.++.|++.+-..++++|.....|.--..++.+.+++..|.+=.....+.+.....++.|-. . .|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg-----------~-A~ 192 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRG-----------Y-AE 192 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhh-----------H-HH
Confidence 45678999999999999999999999999999999999999998877766554443333332210 0 00
Q ss_pred CChHHHHHHHHHHHHHHHHCCcccCCccccccCCh
Q 037713 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532 (610)
Q Consensus 498 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~ 532 (610)
.....+......+..-.+.+|.++...++..+..
T Consensus 193 -rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 193 -RLLGNWEEAAHDLALACKLDYDEANSATLKEVFP 226 (377)
T ss_pred -HHhhchHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 0111223333445556677888888877766654
No 498
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.40 E-value=2.4e+02 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=23.4
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+..|.+.|.+++|.+++++..+ +|++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34559999999999999999998 77654
No 499
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.16 E-value=1.8e+02 Score=28.21 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH-HHHHHhcCchhHHHHHHHHHhcCCCCCCcchHh
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAAL-LSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 446 (610)
.+..|+..|...+.--.+.|.+.+...++.+. ...| |+..|-.- -.-+..+++++.+..+|.+.+.++|++|..+..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34456666666655555666666666676666 3334 34445321 112567889999999999999999998877653
No 500
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.84 E-value=1.8e+02 Score=21.20 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=26.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...|+.+.+.+++++....|..|.......+..+....
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34688888888888888888887776666565554443
Done!