Query 037713
Match_columns 610
No_of_seqs 797 out of 4287
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-39 5.3E-44 351.9 36.6 426 36-470 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-37 5.5E-42 336.0 36.2 444 3-453 84-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.1E-27 3.1E-31 237.5 41.2 369 77-455 7-387 (388)
4 4g26_A Pentatricopeptide repea 100.0 4.8E-28 1.7E-32 251.9 24.8 184 203-388 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-25 1.1E-29 226.0 40.9 351 112-469 6-367 (388)
6 4g26_A Pentatricopeptide repea 100.0 9.1E-28 3.1E-32 249.8 22.1 201 219-420 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.9E-23 1.7E-27 217.8 33.8 264 202-470 186-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4E-27 211.3 31.6 308 137-449 23-371 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.8E-27 215.1 30.7 435 4-447 7-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 3.3E-21 1.1E-25 200.2 37.0 344 68-440 25-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.1E-21 1.1E-25 205.3 36.3 420 39-470 26-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.3E-20 7.9E-25 198.5 29.5 428 4-443 26-498 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.6E-18 1.6E-22 170.4 34.8 314 107-454 5-353 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5.9E-18 2E-22 169.5 33.0 295 171-470 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.8E-23 172.4 20.9 237 49-316 14-253 (449)
16 3hym_B Cell division cycle pro 99.8 3.3E-17 1.1E-21 162.2 29.9 289 137-457 19-321 (330)
17 2xm6_A Protein corresponding t 99.8 6.8E-16 2.3E-20 162.0 40.5 367 67-454 37-453 (490)
18 1fch_A Peroxisomal targeting s 99.8 8.5E-18 2.9E-22 169.4 24.4 278 184-466 38-355 (368)
19 2ooe_A Cleavage stimulation fa 99.8 2.8E-16 9.6E-21 166.7 37.2 406 37-469 12-491 (530)
20 3hym_B Cell division cycle pro 99.8 7.9E-17 2.7E-21 159.4 28.6 264 200-469 20-298 (330)
21 2ooe_A Cleavage stimulation fa 99.8 1.6E-15 5.5E-20 160.9 37.9 377 68-471 12-455 (530)
22 4eqf_A PEX5-related protein; a 99.8 1.9E-17 6.6E-22 166.8 22.0 261 201-466 64-352 (365)
23 1xi4_A Clathrin heavy chain; a 99.8 8.4E-15 2.9E-19 161.4 42.9 284 146-465 1055-1340(1630)
24 3mkr_A Coatomer subunit epsilo 99.8 8.1E-16 2.8E-20 149.2 31.5 266 183-463 11-287 (291)
25 1xi4_A Clathrin heavy chain; a 99.8 6.1E-15 2.1E-19 162.5 40.5 379 37-463 984-1377(1630)
26 2xm6_A Protein corresponding t 99.8 7.6E-15 2.6E-19 154.0 40.3 363 87-472 25-434 (490)
27 1b89_A Protein (clathrin heavy 99.8 2.9E-17 1E-21 162.9 20.2 345 15-402 15-370 (449)
28 1fch_A Peroxisomal targeting s 99.8 2.3E-16 8E-21 158.8 25.9 253 82-366 38-312 (368)
29 4g1t_A Interferon-induced prot 99.7 4.2E-15 1.4E-19 155.2 32.6 371 69-481 51-470 (472)
30 3cv0_A Peroxisome targeting si 99.7 4.1E-16 1.4E-20 154.0 22.0 259 203-467 22-312 (327)
31 4eqf_A PEX5-related protein; a 99.7 3E-16 1E-20 158.0 19.7 156 245-401 184-353 (365)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.8E-22 177.2 10.0 132 269-401 123-262 (1134)
33 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.9E-20 147.4 21.3 245 209-469 6-263 (291)
34 3cv0_A Peroxisome targeting si 99.7 1.2E-14 4.1E-19 143.4 25.9 259 108-400 24-311 (327)
35 4g1t_A Interferon-induced prot 99.7 1E-14 3.4E-19 152.3 26.6 382 36-448 49-471 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.7 6.7E-17 2.3E-21 172.7 8.8 147 304-455 127-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 7.9E-14 2.7E-18 132.3 21.3 216 241-469 8-235 (258)
38 2pl2_A Hypothetical conserved 99.6 4.2E-14 1.4E-18 130.8 18.7 195 270-467 2-211 (217)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.7E-18 132.9 21.2 242 214-464 17-269 (275)
40 3uq3_A Heat shock protein STI1 99.6 6.5E-14 2.2E-18 132.9 19.1 233 204-449 7-255 (258)
41 3u4t_A TPR repeat-containing p 99.6 1.7E-13 6E-18 131.3 20.3 241 209-454 10-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-12 4.6E-17 135.0 26.0 377 11-468 11-419 (452)
43 2h6f_A Protein farnesyltransfe 99.5 8.7E-13 3E-17 132.3 22.1 246 202-453 97-365 (382)
44 2pl2_A Hypothetical conserved 99.5 1.7E-12 5.8E-17 119.9 21.1 193 202-401 5-211 (217)
45 2vq2_A PILW, putative fimbrial 99.5 3.4E-12 1.2E-16 118.2 23.1 168 275-444 44-219 (225)
46 2ho1_A Type 4 fimbrial biogene 99.5 3E-12 1E-16 121.1 22.9 206 202-443 37-245 (252)
47 2q7f_A YRRB protein; TPR, prot 99.5 7E-13 2.4E-17 124.6 18.0 210 203-452 24-238 (243)
48 2vq2_A PILW, putative fimbrial 99.5 2.7E-12 9.3E-17 118.8 21.5 198 271-470 6-211 (225)
49 1ouv_A Conserved hypothetical 99.5 1.1E-11 3.9E-16 118.8 26.2 225 201-440 5-255 (273)
50 2ho1_A Type 4 fimbrial biogene 99.5 2.5E-12 8.5E-17 121.7 21.1 197 273-471 37-239 (252)
51 1ouv_A Conserved hypothetical 99.5 1.3E-11 4.5E-16 118.4 26.2 225 236-472 4-253 (273)
52 3e4b_A ALGK; tetratricopeptide 99.5 3E-12 1E-16 132.3 23.1 341 114-473 12-390 (452)
53 3sf4_A G-protein-signaling mod 99.5 9.7E-12 3.3E-16 126.5 26.3 302 104-458 8-364 (406)
54 2q7f_A YRRB protein; TPR, prot 99.5 9.1E-13 3.1E-17 123.8 17.0 196 272-470 22-222 (243)
55 4e6h_A MRNA 3'-END-processing 99.5 1.3E-10 4.4E-15 124.4 35.5 420 24-451 53-584 (679)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.5E-13 1.5E-17 128.5 14.8 243 82-362 18-269 (275)
57 3sf4_A G-protein-signaling mod 99.5 2E-12 6.7E-17 131.6 20.1 266 202-469 9-335 (406)
58 3u4t_A TPR repeat-containing p 99.5 1.7E-11 5.6E-16 117.4 25.0 234 175-411 7-259 (272)
59 4a1s_A PINS, partner of inscut 99.5 8.4E-13 2.9E-17 134.9 16.9 262 206-469 52-371 (411)
60 3ro2_A PINS homolog, G-protein 99.5 2.5E-12 8.4E-17 126.9 19.1 263 205-469 8-331 (338)
61 2h6f_A Protein farnesyltransfe 99.4 3.3E-12 1.1E-16 128.1 19.7 226 237-467 96-344 (382)
62 3ro2_A PINS homolog, G-protein 99.4 1.8E-11 6.2E-16 120.6 22.0 274 112-438 12-334 (338)
63 3vtx_A MAMA; tetratricopeptide 99.4 1.5E-11 5.2E-16 110.1 19.4 163 304-469 5-169 (184)
64 4abn_A Tetratricopeptide repea 99.4 2.6E-12 8.7E-17 133.7 15.9 193 271-467 100-318 (474)
65 4a1s_A PINS, partner of inscut 99.4 2.6E-11 8.8E-16 123.8 22.8 275 111-438 54-374 (411)
66 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.3E-15 113.7 25.9 219 219-442 33-276 (308)
67 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.3E-16 109.6 16.5 167 272-441 4-175 (184)
68 3nf1_A KLC 1, kinesin light ch 99.3 3.4E-12 1.2E-16 124.7 11.2 235 202-468 27-305 (311)
69 3ulq_A Response regulator aspa 99.3 7E-11 2.4E-15 119.5 20.1 161 306-467 186-365 (383)
70 4e6h_A MRNA 3'-END-processing 99.3 3.6E-09 1.2E-13 113.2 33.6 402 67-472 64-572 (679)
71 2ond_A Cleavage stimulation fa 99.3 4.1E-10 1.4E-14 110.0 23.2 178 219-401 81-267 (308)
72 3q15_A PSP28, response regulat 99.3 1.1E-09 3.7E-14 110.4 27.0 226 208-434 107-363 (378)
73 3nf1_A KLC 1, kinesin light ch 99.3 1E-11 3.5E-16 121.2 11.2 239 170-439 26-310 (311)
74 4gyw_A UDP-N-acetylglucosamine 99.3 5.9E-11 2E-15 128.5 17.4 160 305-467 10-171 (723)
75 3ulq_A Response regulator aspa 99.3 7.7E-10 2.6E-14 111.7 23.9 164 274-437 185-369 (383)
76 1hz4_A MALT regulatory protein 99.3 3.3E-09 1.1E-13 106.6 27.9 261 208-469 20-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 1.8E-10 6E-15 102.7 16.3 164 274-440 9-177 (186)
78 3as5_A MAMA; tetratricopeptide 99.2 4.5E-10 1.5E-14 100.1 18.9 164 304-470 8-173 (186)
79 4i17_A Hypothetical protein; T 99.2 3.7E-10 1.3E-14 104.9 18.7 205 236-451 5-224 (228)
80 4i17_A Hypothetical protein; T 99.2 9.4E-10 3.2E-14 102.2 18.5 189 272-470 6-209 (228)
81 4abn_A Tetratricopeptide repea 99.2 5.2E-10 1.8E-14 116.2 18.5 207 121-330 84-318 (474)
82 1hz4_A MALT regulatory protein 99.2 3.4E-08 1.2E-12 99.1 30.5 267 75-366 20-320 (373)
83 3q15_A PSP28, response regulat 99.1 1.7E-08 5.9E-13 101.6 25.7 218 180-401 110-362 (378)
84 3edt_B KLC 2, kinesin light ch 99.1 6.2E-10 2.1E-14 106.6 12.4 165 305-469 86-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.1 1.5E-09 5.1E-14 117.6 16.0 164 271-437 7-175 (723)
86 1qqe_A Vesicular transport pro 99.1 3.3E-09 1.1E-13 102.7 16.2 200 253-467 32-266 (292)
87 3edt_B KLC 2, kinesin light ch 99.0 3.9E-09 1.3E-13 101.0 15.4 225 151-401 12-278 (283)
88 3qky_A Outer membrane assembly 99.0 3.1E-08 1.1E-12 93.9 21.1 205 272-516 14-247 (261)
89 1qqe_A Vesicular transport pro 99.0 1E-08 3.6E-13 99.1 16.7 167 274-440 78-273 (292)
90 3qky_A Outer membrane assembly 99.0 1.2E-08 4.3E-13 96.7 17.0 203 235-459 12-250 (261)
91 3mv2_B Coatomer subunit epsilo 99.0 8.9E-08 3E-12 91.1 21.5 56 277-332 104-164 (310)
92 3mv2_B Coatomer subunit epsilo 99.0 1.2E-07 4E-12 90.3 22.2 78 221-300 85-163 (310)
93 2fo7_A Synthetic consensus TPR 99.0 2.4E-08 8.1E-13 83.3 15.6 130 306-438 3-134 (136)
94 2uy1_A Cleavage stimulation fa 98.9 5.8E-07 2E-11 93.2 29.2 368 19-434 11-411 (493)
95 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.8E-08 1.6E-12 90.4 18.1 183 274-473 5-216 (225)
96 2fo7_A Synthetic consensus TPR 98.9 1.8E-08 6.1E-13 84.1 13.7 128 341-470 3-132 (136)
97 4ga2_A E3 SUMO-protein ligase 98.9 1.1E-09 3.7E-14 94.3 5.5 140 313-456 6-149 (150)
98 2pzi_A Probable serine/threoni 98.9 9.1E-09 3.1E-13 111.9 13.5 169 284-456 402-583 (681)
99 3qou_A Protein YBBN; thioredox 98.8 6.3E-08 2.1E-12 93.3 15.3 175 289-467 102-281 (287)
100 2pzi_A Probable serine/threoni 98.8 1.5E-07 5.2E-12 102.2 19.6 190 249-443 402-609 (681)
101 3rjv_A Putative SEL1 repeat pr 98.8 2.8E-07 9.5E-12 84.3 18.2 172 292-472 5-199 (212)
102 3urz_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 86.7 15.1 127 310-440 60-190 (208)
103 2ifu_A Gamma-SNAP; membrane fu 98.8 3E-07 1E-11 89.4 19.1 220 214-462 3-253 (307)
104 2vsy_A XCC0866; transferase, g 98.8 1.4E-07 4.7E-12 100.6 16.9 160 286-448 2-169 (568)
105 3dra_A Protein farnesyltransfe 98.7 6.4E-06 2.2E-10 79.1 26.1 227 216-448 47-300 (306)
106 2vsy_A XCC0866; transferase, g 98.7 9.7E-08 3.3E-12 101.7 14.5 152 317-471 2-158 (568)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.8E-11 80.0 18.9 145 276-440 9-154 (213)
108 2r5s_A Uncharacterized protein 98.7 1.1E-07 3.9E-12 84.0 11.7 155 276-467 9-170 (176)
109 2r5s_A Uncharacterized protein 98.7 2.6E-07 8.9E-12 81.6 14.0 157 240-399 8-168 (176)
110 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.9E-07 1.3E-11 84.1 15.1 186 237-443 3-220 (225)
111 3urz_A Uncharacterized protein 98.7 1E-06 3.5E-11 80.2 17.4 183 207-415 9-198 (208)
112 3qou_A Protein YBBN; thioredox 98.7 1.7E-06 5.7E-11 83.2 19.6 163 236-400 115-280 (287)
113 4ga2_A E3 SUMO-protein ligase 98.7 1.6E-08 5.3E-13 87.0 4.6 121 345-468 3-127 (150)
114 3dra_A Protein farnesyltransfe 98.6 5.8E-06 2E-10 79.4 22.9 213 253-469 48-286 (306)
115 4gco_A Protein STI-1; structur 98.6 3.7E-07 1.3E-11 75.5 12.0 109 340-450 14-124 (126)
116 3rjv_A Putative SEL1 repeat pr 98.6 1.9E-06 6.6E-11 78.6 17.7 172 87-269 4-199 (212)
117 3u3w_A Transcriptional activat 98.6 3.5E-06 1.2E-10 81.2 20.4 159 310-468 81-264 (293)
118 3gyz_A Chaperone protein IPGC; 98.6 2.2E-07 7.4E-12 79.5 10.3 100 371-470 31-133 (151)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.2E-06 4.2E-11 79.8 15.9 126 342-472 9-152 (213)
120 2vgx_A Chaperone SYCD; alterna 98.6 1.3E-07 4.4E-12 80.9 8.6 96 374-469 20-117 (148)
121 1na0_A Designed protein CTPR3; 98.6 6.3E-07 2.2E-11 73.3 12.6 115 339-455 9-125 (125)
122 1a17_A Serine/threonine protei 98.6 8.6E-07 2.9E-11 77.0 13.9 127 340-468 14-144 (166)
123 2c2l_A CHIP, carboxy terminus 98.6 2.3E-07 7.9E-12 88.9 10.9 189 273-470 4-199 (281)
124 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-06 4E-11 84.6 15.5 163 305-467 76-263 (293)
125 2uy1_A Cleavage stimulation fa 98.5 5.5E-06 1.9E-10 85.9 21.3 372 50-469 6-412 (493)
126 2vyi_A SGTA protein; chaperone 98.5 6.5E-07 2.2E-11 73.9 11.4 117 339-457 12-130 (131)
127 2lni_A Stress-induced-phosphop 98.5 7.2E-07 2.5E-11 74.1 11.5 116 339-456 16-133 (133)
128 2ifu_A Gamma-SNAP; membrane fu 98.5 4.5E-07 1.5E-11 88.2 11.5 197 250-468 3-222 (307)
129 3u3w_A Transcriptional activat 98.5 1.6E-05 5.3E-10 76.6 21.9 159 278-436 80-266 (293)
130 4gco_A Protein STI-1; structur 98.5 5.3E-07 1.8E-11 74.6 9.8 100 371-470 8-110 (126)
131 2qfc_A PLCR protein; TPR, HTH, 98.5 4.4E-06 1.5E-10 80.5 17.6 161 275-435 77-265 (293)
132 2xcb_A PCRH, regulatory protei 98.5 1.4E-06 4.7E-11 73.8 12.0 95 375-469 18-114 (142)
133 1p5q_A FKBP52, FK506-binding p 98.4 1.9E-06 6.6E-11 84.8 13.7 143 303-467 146-291 (336)
134 3q7a_A Farnesyltransferase alp 98.4 0.00013 4.5E-09 70.8 25.8 225 210-440 62-336 (349)
135 2e2e_A Formate-dependent nitri 98.4 7.8E-07 2.7E-11 78.5 8.3 116 352-469 23-143 (177)
136 3gw4_A Uncharacterized protein 98.4 3E-06 1E-10 76.3 12.4 152 285-436 4-176 (203)
137 1elw_A TPR1-domain of HOP; HOP 98.4 5.3E-06 1.8E-10 66.9 12.5 109 340-450 5-115 (118)
138 3gw4_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 75.6 12.8 82 183-264 4-92 (203)
139 2e2e_A Formate-dependent nitri 98.4 3.1E-06 1.1E-10 74.6 11.8 127 315-444 21-152 (177)
140 3upv_A Heat shock protein STI1 98.3 2.4E-06 8.1E-11 70.5 9.7 94 376-469 5-100 (126)
141 2vgx_A Chaperone SYCD; alterna 98.3 1.2E-06 4E-11 74.8 8.0 103 339-443 21-125 (148)
142 2c2l_A CHIP, carboxy terminus 98.3 7.5E-06 2.6E-10 78.3 14.3 191 237-437 3-200 (281)
143 1a17_A Serine/threonine protei 98.3 1.3E-05 4.4E-10 69.3 14.5 127 305-434 14-144 (166)
144 2kck_A TPR repeat; tetratricop 98.3 2.6E-06 8.8E-11 68.1 9.1 94 376-469 7-105 (112)
145 2fbn_A 70 kDa peptidylprolyl i 98.3 5.2E-06 1.8E-10 74.7 12.1 166 281-467 12-183 (198)
146 1wao_1 Serine/threonine protei 98.3 3.5E-06 1.2E-10 87.1 12.4 118 347-466 14-135 (477)
147 4f3v_A ESX-1 secretion system 98.3 4.1E-05 1.4E-09 71.8 18.3 126 143-268 105-238 (282)
148 3gyz_A Chaperone protein IPGC; 98.3 3.1E-06 1.1E-10 72.2 9.9 95 304-401 36-130 (151)
149 3dss_A Geranylgeranyl transfer 98.3 0.00015 5.2E-09 70.0 22.8 229 213-448 40-316 (331)
150 1hxi_A PEX5, peroxisome target 98.3 3.2E-06 1.1E-10 69.3 9.1 93 377-469 19-113 (121)
151 2xcb_A PCRH, regulatory protei 98.3 5.3E-06 1.8E-10 70.1 10.8 106 340-447 19-126 (142)
152 3q49_B STIP1 homology and U bo 98.3 6E-06 2.1E-10 69.0 10.6 96 374-469 8-105 (137)
153 4f3v_A ESX-1 secretion system 98.2 6.9E-06 2.4E-10 77.0 11.8 181 285-470 18-237 (282)
154 1wao_1 Serine/threonine protei 98.2 1.3E-05 4.6E-10 82.8 15.2 113 316-431 18-134 (477)
155 2lni_A Stress-induced-phosphop 98.2 5.5E-06 1.9E-10 68.6 10.2 99 372-470 13-113 (133)
156 1na0_A Designed protein CTPR3; 98.2 3.6E-05 1.2E-09 62.5 14.6 93 306-401 11-103 (125)
157 3sz7_A HSC70 cochaperone (SGT) 98.2 4.8E-06 1.7E-10 72.3 9.6 104 339-444 11-116 (164)
158 3sz7_A HSC70 cochaperone (SGT) 98.2 9.7E-06 3.3E-10 70.3 11.6 96 303-401 10-105 (164)
159 3upv_A Heat shock protein STI1 98.2 8.4E-06 2.9E-10 67.1 10.5 107 341-449 6-120 (126)
160 3q7a_A Farnesyltransferase alp 98.2 0.00011 3.8E-09 71.3 19.7 212 254-469 70-330 (349)
161 2dba_A Smooth muscle cell asso 98.2 1.8E-05 6.1E-10 66.9 12.7 110 339-451 28-143 (148)
162 2dba_A Smooth muscle cell asso 98.2 1E-05 3.5E-10 68.4 11.1 98 373-470 26-128 (148)
163 1elw_A TPR1-domain of HOP; HOP 98.2 8.9E-06 3E-10 65.5 10.3 97 374-470 3-101 (118)
164 2kck_A TPR repeat; tetratricop 98.2 1.1E-05 3.9E-10 64.2 10.2 100 340-441 7-111 (112)
165 2vyi_A SGTA protein; chaperone 98.2 3.9E-05 1.3E-09 62.9 13.7 115 305-422 13-129 (131)
166 3q49_B STIP1 homology and U bo 98.2 1.5E-05 5.2E-10 66.4 11.2 100 338-439 8-109 (137)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.7E-05 9.4E-10 80.0 15.0 94 375-468 317-413 (457)
168 1elr_A TPR2A-domain of HOP; HO 98.1 8.4E-06 2.9E-10 67.1 8.9 107 342-451 7-122 (131)
169 4gcn_A Protein STI-1; structur 98.1 7.3E-06 2.5E-10 67.7 8.0 94 376-469 9-111 (127)
170 1p5q_A FKBP52, FK506-binding p 98.1 4.4E-05 1.5E-09 75.0 14.4 120 272-394 146-283 (336)
171 2fbn_A 70 kDa peptidylprolyl i 98.0 1.1E-05 3.8E-10 72.4 8.4 148 244-395 10-176 (198)
172 4gcn_A Protein STI-1; structur 98.0 7.3E-05 2.5E-09 61.6 12.8 59 307-366 11-69 (127)
173 1hxi_A PEX5, peroxisome target 98.0 2.2E-05 7.4E-10 64.2 9.4 97 343-441 21-119 (121)
174 4b4t_Q 26S proteasome regulato 98.0 3.8E-05 1.3E-09 78.3 13.2 161 307-467 58-242 (434)
175 2hr2_A Hypothetical protein; a 98.0 1.4E-05 4.7E-10 67.7 7.8 61 409-469 59-130 (159)
176 1ihg_A Cyclophilin 40; ppiase 98.0 3.5E-05 1.2E-09 76.7 12.1 137 305-462 224-362 (370)
177 2xev_A YBGF; tetratricopeptide 98.0 4.6E-05 1.6E-09 62.7 11.0 97 345-443 8-112 (129)
178 2xev_A YBGF; tetratricopeptide 98.0 1.5E-05 5.2E-10 65.6 7.9 92 379-470 6-105 (129)
179 3dss_A Geranylgeranyl transfer 98.0 0.0011 3.6E-08 64.0 21.8 211 255-469 47-303 (331)
180 4b4t_Q 26S proteasome regulato 98.0 0.00011 3.7E-09 74.9 15.8 161 241-401 58-242 (434)
181 1elr_A TPR2A-domain of HOP; HO 98.0 5.2E-05 1.8E-09 62.2 10.6 105 306-411 6-116 (131)
182 3ro3_A PINS homolog, G-protein 97.9 4.6E-05 1.6E-09 65.1 10.2 60 409-468 91-156 (164)
183 3ro3_A PINS homolog, G-protein 97.9 4.7E-05 1.6E-09 65.1 10.2 96 341-436 51-158 (164)
184 3k9i_A BH0479 protein; putativ 97.9 5.7E-06 2E-10 67.2 3.8 59 409-467 29-87 (117)
185 3rkv_A Putative peptidylprolyl 97.9 3.9E-05 1.3E-09 66.2 8.9 76 375-450 63-141 (162)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 4E-05 1.4E-09 75.4 9.8 146 304-469 179-327 (338)
187 1dce_A Protein (RAB geranylger 97.9 0.00054 1.8E-08 72.1 19.0 169 288-459 44-244 (567)
188 3rkv_A Putative peptidylprolyl 97.9 3.1E-05 1.1E-09 66.9 7.8 64 407-470 63-126 (162)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 5.4E-05 1.9E-09 74.4 10.3 152 273-441 179-333 (338)
190 2hr2_A Hypothetical protein; a 97.8 7.9E-05 2.7E-09 63.1 9.6 73 377-449 59-144 (159)
191 2l6j_A TPR repeat-containing p 97.8 5.1E-05 1.7E-09 60.4 7.4 90 374-463 3-100 (111)
192 3k9i_A BH0479 protein; putativ 97.8 1.7E-05 5.7E-10 64.4 4.4 90 352-442 3-96 (117)
193 3n71_A Histone lysine methyltr 97.8 0.00011 3.8E-09 75.5 11.5 126 348-473 318-467 (490)
194 1na3_A Designed protein CTPR2; 97.7 0.00011 3.7E-09 55.9 7.8 81 375-455 9-91 (91)
195 3ma5_A Tetratricopeptide repea 97.6 0.00018 6.2E-09 56.2 7.4 64 406-469 6-69 (100)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0008 2.7E-08 69.1 14.2 129 304-434 268-413 (457)
197 1ihg_A Cyclophilin 40; ppiase 97.5 0.0007 2.4E-08 67.2 12.5 117 276-395 226-361 (370)
198 2kat_A Uncharacterized protein 97.5 0.00018 6.1E-09 57.8 6.4 76 394-469 4-81 (115)
199 1zu2_A Mitochondrial import re 97.3 0.00017 5.9E-09 60.8 4.8 84 387-470 14-120 (158)
200 3n71_A Histone lysine methyltr 97.3 0.00094 3.2E-08 68.6 11.0 93 275-367 353-463 (490)
201 1dce_A Protein (RAB geranylger 97.3 0.0062 2.1E-07 64.0 16.6 151 317-470 42-221 (567)
202 2l6j_A TPR repeat-containing p 97.3 0.00028 9.7E-09 55.9 5.1 63 304-367 4-66 (111)
203 3bee_A Putative YFRE protein; 97.2 0.0013 4.4E-08 50.4 7.9 70 404-473 3-75 (93)
204 1zu2_A Mitochondrial import re 97.2 0.00021 7.2E-09 60.3 3.6 50 392-441 63-125 (158)
205 2kat_A Uncharacterized protein 97.2 0.0016 5.3E-08 52.1 8.6 80 358-439 4-85 (115)
206 1klx_A Cysteine rich protein B 97.1 0.007 2.4E-07 50.3 12.0 111 318-437 9-127 (138)
207 1klx_A Cysteine rich protein B 97.1 0.011 3.6E-07 49.1 13.2 86 279-367 31-125 (138)
208 3qwp_A SET and MYND domain-con 97.0 0.0028 9.6E-08 64.0 10.6 116 382-515 294-427 (429)
209 3ma5_A Tetratricopeptide repea 97.0 0.0036 1.2E-07 48.6 8.6 64 303-367 6-69 (100)
210 1na3_A Designed protein CTPR2; 96.9 0.0092 3.1E-07 44.8 10.6 79 305-386 10-88 (91)
211 3ly7_A Transcriptional activat 96.9 0.015 5.2E-07 56.3 13.9 137 302-440 192-343 (372)
212 3qww_A SET and MYND domain-con 96.7 0.0074 2.5E-07 60.8 10.7 92 351-442 310-422 (433)
213 3lvg_A Clathrin heavy chain 1; 96.7 6.1E-05 2.1E-09 74.2 -4.6 237 69-325 54-325 (624)
214 3qwp_A SET and MYND domain-con 96.6 0.014 4.6E-07 59.0 11.8 99 346-444 294-413 (429)
215 2kc7_A BFR218_protein; tetratr 96.6 0.0069 2.4E-07 46.6 7.6 64 381-444 6-72 (99)
216 3qww_A SET and MYND domain-con 96.5 0.0025 8.7E-08 64.2 6.0 83 387-469 310-410 (433)
217 1wy6_A Hypothetical protein ST 96.5 0.076 2.6E-06 42.5 12.4 139 316-473 19-157 (172)
218 3mkq_A Coatomer beta'-subunit; 96.4 0.18 6.3E-06 55.5 20.9 129 144-298 633-761 (814)
219 1pc2_A Mitochondria fission pr 96.3 0.017 5.7E-07 48.1 8.8 64 405-468 30-98 (152)
220 2kc7_A BFR218_protein; tetratr 96.3 0.006 2E-07 46.9 5.6 58 413-470 6-64 (99)
221 3ly7_A Transcriptional activat 95.9 0.23 8E-06 48.0 15.8 72 302-378 275-346 (372)
222 3mkq_A Coatomer beta'-subunit; 95.9 0.24 8.2E-06 54.5 18.5 103 281-401 660-762 (814)
223 3bee_A Putative YFRE protein; 95.8 0.056 1.9E-06 41.0 8.8 78 372-450 3-85 (93)
224 3u64_A Protein TP_0956; tetrat 95.8 0.025 8.6E-07 52.5 7.9 87 391-477 179-276 (301)
225 3lvg_A Clathrin heavy chain 1; 95.7 0.0017 5.6E-08 64.3 -0.3 398 37-463 53-534 (624)
226 1qsa_A Protein (soluble lytic 95.5 3 0.0001 43.8 26.0 114 318-435 228-347 (618)
227 2v5f_A Prolyl 4-hydroxylase su 95.4 0.065 2.2E-06 41.6 8.3 71 377-447 7-86 (104)
228 3mkq_B Coatomer subunit alpha; 95.4 0.35 1.2E-05 41.3 13.1 129 281-433 13-141 (177)
229 1pc2_A Mitochondria fission pr 95.4 0.042 1.4E-06 45.7 7.2 71 373-443 30-107 (152)
230 1nzn_A CGI-135 protein, fissio 94.3 0.22 7.6E-06 39.8 8.5 28 413-440 80-107 (126)
231 3u64_A Protein TP_0956; tetrat 93.8 0.19 6.3E-06 46.7 8.2 81 356-439 180-272 (301)
232 2v5f_A Prolyl 4-hydroxylase su 93.5 0.26 8.8E-06 38.1 7.6 65 342-406 8-78 (104)
233 1y8m_A FIS1; mitochondria, unk 92.8 1.9 6.4E-05 35.1 11.5 64 405-468 37-104 (144)
234 1nzn_A CGI-135 protein, fissio 92.5 0.63 2.1E-05 37.1 8.4 86 318-406 15-106 (126)
235 1wy6_A Hypothetical protein ST 92.4 3.6 0.00012 33.1 14.0 135 285-438 19-156 (172)
236 4gns_B Protein CSD3, chitin bi 92.3 0.73 2.5E-05 49.4 11.2 52 417-468 347-398 (754)
237 3mkq_B Coatomer subunit alpha; 92.2 4.9 0.00017 34.2 16.3 47 149-197 14-60 (177)
238 3lpz_A GET4 (YOR164C homolog); 90.4 12 0.00042 35.4 19.7 167 40-229 37-214 (336)
239 4ady_A RPN2, 26S proteasome re 89.7 23 0.00077 38.9 19.6 285 73-367 343-657 (963)
240 2wpv_A GET4, UPF0363 protein Y 89.7 13 0.00046 34.9 18.8 167 40-229 35-215 (312)
241 4h7y_A Dual specificity protei 89.4 2.2 7.5E-05 35.0 8.7 53 389-441 74-128 (161)
242 3lpz_A GET4 (YOR164C homolog); 89.3 15 0.00051 34.8 22.4 167 174-367 38-215 (336)
243 3txn_A 26S proteasome regulato 88.9 12 0.00042 36.5 15.6 157 277-434 23-208 (394)
244 3ltm_A Alpha-REP4; protein eng 88.6 12 0.00041 32.7 19.4 49 138-186 93-141 (211)
245 2wpv_A GET4, UPF0363 protein Y 88.1 17 0.00059 34.1 21.5 168 174-368 36-217 (312)
246 4h7y_A Dual specificity protei 87.1 2.3 7.8E-05 34.9 7.5 55 419-473 72-126 (161)
247 3o48_A Mitochondria fission 1 87.1 2.4 8.2E-05 34.0 7.5 43 425-467 61-104 (134)
248 3ffl_A Anaphase-promoting comp 86.6 4 0.00014 34.2 8.9 27 376-402 123-149 (167)
249 1v54_E Cytochrome C oxidase po 86.3 2.9 9.8E-05 31.5 7.0 64 319-384 25-88 (109)
250 3ltj_A Alpharep-4; protein eng 86.0 16 0.00055 31.5 19.8 117 61-186 20-136 (201)
251 4gns_B Protein CSD3, chitin bi 84.9 3.1 0.00011 44.5 9.6 52 147-198 344-398 (754)
252 4b4t_P 26S proteasome regulato 83.3 37 0.0012 33.9 16.3 186 215-401 29-244 (445)
253 4fhn_B Nucleoporin NUP120; pro 82.9 42 0.0014 38.3 18.5 164 175-357 816-989 (1139)
254 2p58_C Putative type III secre 82.1 14 0.00048 27.7 10.1 71 120-194 22-92 (116)
255 1v54_E Cytochrome C oxidase po 81.7 8.7 0.0003 29.0 7.9 62 85-148 26-87 (109)
256 2ff4_A Probable regulatory pro 81.6 7.9 0.00027 38.0 10.4 56 310-366 177-232 (388)
257 3ffl_A Anaphase-promoting comp 81.4 7.6 0.00026 32.5 8.5 20 413-432 128-147 (167)
258 2ff4_A Probable regulatory pro 81.3 2.5 8.7E-05 41.6 6.8 66 411-476 175-245 (388)
259 2uwj_G Type III export protein 80.5 13 0.00046 27.8 8.4 50 181-232 49-98 (115)
260 3ltm_A Alpha-REP4; protein eng 80.1 29 0.00099 30.1 18.9 46 138-183 31-76 (211)
261 2y69_E Cytochrome C oxidase su 79.9 6.3 0.00022 31.5 7.0 63 320-384 69-131 (152)
262 3o48_A Mitochondria fission 1 79.4 18 0.00063 28.9 9.7 32 410-441 81-112 (134)
263 2uwj_G Type III export protein 79.4 18 0.0006 27.2 9.2 85 254-343 22-106 (115)
264 2p58_C Putative type III secre 78.6 19 0.00064 27.1 9.8 85 254-343 23-107 (116)
265 4ady_A RPN2, 26S proteasome re 78.3 85 0.0029 34.5 29.4 286 142-434 341-656 (963)
266 3ltj_A Alpharep-4; protein eng 77.7 33 0.0011 29.4 17.1 142 35-185 25-166 (201)
267 4fhn_B Nucleoporin NUP120; pro 75.3 52 0.0018 37.5 16.1 118 272-392 841-988 (1139)
268 1y8m_A FIS1; mitochondria, unk 73.0 36 0.0012 27.6 10.8 33 410-442 80-112 (144)
269 2y69_E Cytochrome C oxidase su 71.5 21 0.00071 28.6 7.9 60 87-148 71-130 (152)
270 3txn_A 26S proteasome regulato 71.3 79 0.0027 30.8 20.9 288 144-473 23-346 (394)
271 1zbp_A Hypothetical protein VP 70.2 59 0.002 29.6 11.9 53 314-367 7-59 (273)
272 1zbp_A Hypothetical protein VP 66.6 9.2 0.00032 34.9 5.8 55 385-439 7-63 (273)
273 3mv2_A Coatomer subunit alpha; 63.7 79 0.0027 29.6 11.6 60 398-471 196-257 (325)
274 4b4t_R RPN7, 26S proteasome re 63.5 41 0.0014 33.4 10.6 96 275-370 133-239 (429)
275 3esl_A Checkpoint serine/threo 62.8 76 0.0026 27.4 12.7 102 392-519 61-168 (202)
276 1wdy_A 2-5A-dependent ribonucl 60.6 50 0.0017 29.8 10.3 114 42-166 6-128 (285)
277 2qx5_A Nucleoporin NIC96; mRNA 57.7 1.9E+02 0.0065 30.4 17.2 85 207-303 299-386 (661)
278 4b4t_R RPN7, 26S proteasome re 56.7 1.1E+02 0.0038 30.1 12.5 96 306-401 133-234 (429)
279 1k1a_A B-cell lymphoma 3-encod 54.9 1.1E+02 0.0037 26.7 11.2 85 9-94 12-101 (241)
280 3kea_A K1L; tropism, ANK repea 54.3 87 0.003 28.6 10.7 143 43-195 33-182 (285)
281 4a1g_A Mitotic checkpoint seri 52.6 79 0.0027 25.9 8.6 79 392-473 52-133 (152)
282 2l0z_A Glycoprotein G2; zinc-b 52.1 4.4 0.00015 24.3 0.7 14 596-609 15-29 (42)
283 3b7b_A Euchromatic histone-lys 52.1 61 0.0021 28.4 9.0 51 10-64 15-67 (237)
284 1wdy_A 2-5A-dependent ribonucl 51.4 1.3E+02 0.0044 26.9 11.4 116 9-139 8-132 (285)
285 2nsz_A Programmed cell death p 51.0 51 0.0017 26.2 7.2 64 276-339 10-78 (129)
286 3kea_A K1L; tropism, ANK repea 49.0 1E+02 0.0036 28.1 10.3 174 10-197 35-218 (285)
287 1ug3_A EIF4GI, eukaryotic prot 48.4 83 0.0028 29.9 9.6 26 144-169 15-40 (339)
288 1qsa_A Protein (soluble lytic 47.7 2.6E+02 0.009 29.1 35.8 226 216-460 228-469 (618)
289 1oyz_A Hypothetical protein YI 46.8 1.6E+02 0.0056 26.5 23.0 17 236-252 103-119 (280)
290 2wvi_A Mitotic checkpoint seri 46.0 1E+02 0.0035 25.6 8.4 48 426-473 79-128 (164)
291 2zu6_B Programmed cell death p 44.9 1.4E+02 0.0047 27.9 10.1 61 174-234 169-234 (307)
292 4a1g_A Mitotic checkpoint seri 43.7 1.3E+02 0.0046 24.6 8.9 54 124-177 84-138 (152)
293 2ion_A PDCD4, programmed cell 41.5 1.4E+02 0.0049 24.3 9.4 59 176-234 14-77 (152)
294 2ion_A PDCD4, programmed cell 41.4 50 0.0017 27.2 5.8 63 276-338 12-79 (152)
295 3eu9_A Huntingtin-interacting 40.9 1.7E+02 0.006 25.1 10.3 52 11-66 14-67 (240)
296 2d2s_A Exocyst complex compone 39.9 86 0.0029 28.0 7.6 29 372-400 88-116 (235)
297 2r9g_A AAA ATPase, central reg 38.1 1.9E+02 0.0066 24.8 9.7 63 206-270 15-85 (204)
298 2nsz_A Programmed cell death p 38.0 1.5E+02 0.005 23.4 10.7 60 175-234 11-75 (129)
299 4b4t_P 26S proteasome regulato 37.9 3.1E+02 0.011 27.1 24.4 143 185-331 30-204 (445)
300 3eu9_A Huntingtin-interacting 37.9 1.3E+02 0.0046 25.9 9.0 110 45-164 13-130 (240)
301 3ygs_P Procaspase 9; apoptosis 37.6 37 0.0013 25.4 4.1 33 186-218 52-84 (97)
302 1oai_A Nuclear RNA export fact 37.4 19 0.00067 24.0 2.2 25 82-106 33-57 (59)
303 2d2s_A Exocyst complex compone 36.7 1.2E+02 0.004 27.1 8.0 86 75-164 24-115 (235)
304 1n11_A Ankyrin; clathrin, BAND 35.8 3.1E+02 0.011 26.5 12.2 330 9-375 17-372 (437)
305 4b4t_S RPN3, 26S proteasome re 35.8 1.1E+02 0.0039 30.8 8.4 63 339-401 231-296 (523)
306 4b4t_S RPN3, 26S proteasome re 35.1 3.7E+02 0.013 27.2 13.0 178 273-473 231-432 (523)
307 3eiq_C Programmed cell death p 35.1 3E+02 0.01 26.2 14.6 62 173-234 219-285 (358)
308 1k1a_A B-cell lymphoma 3-encod 35.0 1.4E+02 0.0049 25.8 8.6 20 80-99 17-36 (241)
309 3mkr_B Coatomer subunit alpha; 33.3 1.6E+02 0.0055 27.5 8.4 61 398-472 187-249 (320)
310 4gq2_M Nucleoporin NUP120; bet 33.3 3.6E+02 0.012 29.9 12.9 85 345-435 816-925 (950)
311 2zu6_B Programmed cell death p 32.4 3.1E+02 0.011 25.5 15.0 28 143-170 6-33 (307)
312 2k0q_A Putative uncharacterize 32.2 17 0.00058 24.9 1.2 22 586-607 8-29 (74)
313 1n11_A Ankyrin; clathrin, BAND 31.7 2E+02 0.007 27.9 9.9 19 147-165 84-102 (437)
314 3bge_A Predicted ATPase; struc 31.4 2E+02 0.0068 24.7 7.9 45 207-252 9-56 (201)
315 3bqo_A Telomeric repeat-bindin 30.4 2.2E+02 0.0077 24.4 8.0 51 391-441 94-151 (211)
316 1qc6_A EVH1 domain from ENA/VA 29.3 16 0.00056 29.2 0.9 41 558-606 44-88 (130)
317 2p1h_A APAF-1, apoptotic prote 29.1 74 0.0025 23.4 4.6 35 153-187 49-83 (94)
318 3ygs_P Procaspase 9; apoptosis 28.7 75 0.0026 23.6 4.5 38 287-324 51-88 (97)
319 1oyz_A Hypothetical protein YI 28.4 3.2E+02 0.011 24.4 21.7 174 37-216 36-220 (280)
320 3hra_A Ankyrin repeat family p 28.1 2.4E+02 0.0082 23.4 8.6 18 48-65 12-29 (201)
321 3b7b_A Euchromatic histone-lys 27.0 1.7E+02 0.006 25.2 7.7 14 183-196 86-99 (237)
322 4aez_C MAD3, mitotic spindle c 26.9 1.4E+02 0.0049 26.2 6.5 81 391-474 100-183 (223)
323 2pk8_A Uncharacterized protein 26.5 44 0.0015 24.4 2.6 29 498-526 13-41 (103)
324 3jxi_A Vanilloid receptor-rela 26.4 2.4E+02 0.0082 24.8 8.6 51 80-131 13-72 (260)
325 2lo3_A SAGA-associated factor 25.5 17 0.00058 22.0 0.3 10 566-575 16-25 (44)
326 3bu8_A Telomeric repeat-bindin 25.5 2.4E+02 0.008 24.6 7.3 47 355-401 88-140 (235)
327 2qx5_A Nucleoporin NIC96; mRNA 25.0 4.2E+02 0.014 27.8 10.8 32 375-406 533-569 (661)
328 3jxi_A Vanilloid receptor-rela 24.8 50 0.0017 29.5 3.6 84 114-198 11-117 (260)
329 3ctd_A Putative ATPase, AAA fa 24.6 3.4E+02 0.012 23.5 9.1 67 203-270 33-107 (213)
330 3ljn_A Hypothetical protein; a 24.5 3.2E+02 0.011 25.6 9.6 14 183-196 182-195 (364)
331 2fe3_A Peroxide operon regulat 24.0 1.9E+02 0.0065 23.2 6.6 64 328-393 11-74 (145)
332 3eiq_C Programmed cell death p 23.5 4.8E+02 0.017 24.8 21.0 65 275-339 219-288 (358)
333 1ug3_A EIF4GI, eukaryotic prot 23.4 3.7E+02 0.013 25.3 9.5 61 174-234 14-78 (339)
334 2xig_A Ferric uptake regulatio 23.2 2.6E+02 0.0089 22.6 7.3 64 328-393 16-79 (150)
335 2pnn_A Transient receptor pote 23.0 2.8E+02 0.0097 24.6 8.5 14 182-195 156-169 (273)
336 3i5p_A Nucleoporin NUP170; hel 22.9 6E+02 0.021 25.7 11.4 68 404-471 175-247 (525)
337 2etb_A Transient receptor pote 22.2 54 0.0018 29.3 3.2 21 79-99 9-29 (256)
338 3esl_A Checkpoint serine/threo 22.1 3.8E+02 0.013 23.1 12.8 58 215-272 92-149 (202)
339 2fe3_A Peroxide operon regulat 22.0 2.3E+02 0.0078 22.7 6.7 39 118-156 34-72 (145)
340 3twr_A Tankyrase-2; ankyrin re 21.9 2.6E+02 0.009 22.3 7.4 19 45-63 12-30 (165)
341 1bd8_A P19INK4D CDK4/6 inhibit 21.7 1.3E+02 0.0045 23.9 5.3 15 49-63 43-57 (156)
342 3hra_A Ankyrin repeat family p 20.0 3.3E+02 0.011 22.5 7.9 76 13-92 12-92 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-39 Score=351.87 Aligned_cols=426 Identities=9% Similarity=-0.031 Sum_probs=344.7
Q ss_pred CCCchHHHHHHHhhcCCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHH
Q 037713 36 QYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113 (610)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~ 113 (610)
+++..++.++..|.+.|++++|..+|++|. .|+..+|+.++.+|.+.|++++|+.+|+++.. .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHH
Confidence 345556666666666666666666666654 34555666666666666666666666666544 3456666666666
Q ss_pred HHhccCCcHHHHHHHHHHHhc---------------CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---Chh---
Q 037713 114 ACGSLGATRLGKQVHACFVLS---------------PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSV--- 172 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~--- 172 (610)
++.+.|++++|..+|+++... |.+++..+++.++.+|.+.|++++|.++|++|... +..
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 666666666666666632211 23445666666666666666666666666666422 122
Q ss_pred -----------------------------------hHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhC
Q 037713 173 -----------------------------------SWTAMLSAYARSGRKKDAMEIFEQAPV--RNLFLWTALVSGLVQS 215 (610)
Q Consensus 173 -----------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 215 (610)
+|+.++..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 234446677789999999999999987 7899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (610)
|++++|+++|++|.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 319 g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP--YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998763 578889999999999999999999999999764 56788999999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 296 FGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 296 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..+|..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 998853 468899999999999999999999999999864 347899999999999999999999999999874 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 57899999999999999999999999988 45787 7899999999999999999999999999999999999
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
|..++.+|.+.|++++|.+.++.+.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-37 Score=336.03 Aligned_cols=444 Identities=9% Similarity=-0.033 Sum_probs=393.4
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccC--CCCCcchHHHHHHHHH
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM--PQRDHVSWASILTAYN 80 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~ 80 (610)
+..|..++..+.+.|+++.|..++..++.. .|+..+++.++.+|.+.|++++|.++|+.+ ..++..+|+.++.+|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 456888999999999999999999999865 467788999999999999999999999998 4678999999999999
Q ss_pred cCCCchHHHHHHHHhHHCC--------------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH-
Q 037713 81 QANLPQKTISIFSTMLALD--------------KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS- 145 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~--------------~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~- 145 (610)
+.|++++|+++|+++.... +.+++..+|+.++.++.+.|++++|..+|+++++.+ +.+...+..
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHH
Confidence 9999999999999543211 123468899999999999999999999999999875 333333333
Q ss_pred -------------------------------------HHHHHHhCCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCC
Q 037713 146 -------------------------------------LVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 146 -------------------------------------li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 186 (610)
++.+|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 35667788999999999999987 799999999999999999
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHH
Q 037713 187 KKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263 (610)
Q Consensus 187 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 263 (610)
+++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. |.+..++..+...|.+.|++++|.++++.
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999875 3477899999999999999999999999999765 36899999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037713 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340 (610)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 340 (610)
+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 99864 45688999999999999999999999998863 478999999999999999999999999999864 34789
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITPS--LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAAL 413 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 413 (610)
+|+.++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++ ...| +..+|..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999997742 56777 789999999999999999999999998 3344 78999999
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..+|...|++++|.+.++++++++|+++.++..|+++|..
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988853
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.1e-27 Score=237.52 Aligned_cols=369 Identities=11% Similarity=0.047 Sum_probs=287.1
Q ss_pred HHHHcCCCchHHHHHHHHhHHCCCCCCCh-hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 037713 77 TAYNQANLPQKTISIFSTMLALDKLQPDH-FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155 (610)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 155 (610)
..+.+.|++++|++.|.++.+. .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455667777777777666663 3433 334444455566677777777776666654 5566667777777777777
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 156 PNNARAVFDSIK--LK-NSVSWTAMLSAYARSGRKKDAMEIFEQAP--VR-NLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 156 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+++|...|+++. .| +..+|..+...+.+.|++++|.+.|+++. .| +...+..+...+...|++++|++.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777776664 22 44567777777777777777777776654 22 44567777778888888888888888888
Q ss_pred HcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhH
Q 037713 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVS 306 (610)
Q Consensus 230 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~ 306 (610)
+.. |.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++..+ .+..+
T Consensus 163 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 765 2467788888888888888888888888888765 34567788888999999999999999887753 36788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
|..+...|...|++++|++.|+++.+... .+..++..+..++.+.|++++|.+.|+.+.+. .+.+..++..+...|.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 99999999999999999999999998632 25778999999999999999999999999884 4667889999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 387 RSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+.|++++|.+.++++ ...| +..++..+...+...|++++|...++++++++|+++.+|..++.++...|
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999988 5555 47789999999999999999999999999999999999999998887665
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.8e-28 Score=251.88 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc---------cHHHHHHHHHHHHHhCCCCch
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA---------VLELGKQIHGLVIALGYESCL 273 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~ 273 (610)
..++.+|.+|++.|+.++|+++|++|.+.|++ ||..||+++|.+|++.+ .++.|.+++++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 46888999999999999999999999999999 99999999999998654 478999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
.+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999997 4799999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999885 9999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.2e-25 Score=226.02 Aligned_cols=351 Identities=14% Similarity=0.074 Sum_probs=310.1
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSGRKK 188 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 188 (610)
...+.+.|++++|.+.+..+.+.. |.+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999998875 5667788888899999999999999998776 336789999999999999999
Q ss_pred HHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 189 DAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 189 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+|...|+++. ..+..+|..+..++.+.|++++|++.|+++.+.. |.+...+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999875 3356789999999999999999999999999876 2456677788888999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++...... .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 874 44678899999999999999999999999863 3577899999999999999999999999987632 257889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-P-FEPDEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~ 420 (610)
..+..++...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.|+++ . .+++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999873 3445788999999999999999999999998 2 345788999999999999
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++.+.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999875
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.1e-28 Score=249.83 Aligned_cols=201 Identities=11% Similarity=0.147 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---------H
Q 037713 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD---------I 289 (610)
Q Consensus 219 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 289 (610)
..+..+.+++.+.+....+...+..+|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777776334456889999999999999999999999999999999999999999997764 7
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 290 IAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 290 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999996 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 037713 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHH 420 (610)
Q Consensus 366 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 420 (610)
.+. |+.||..+|++||++|++.|++++|.++|++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 985 99999999999999999999999999999999 8899999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.9e-23 Score=217.85 Aligned_cols=264 Identities=9% Similarity=-0.075 Sum_probs=225.0
Q ss_pred hhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCC-------CCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 202 LFLWTALVSGLVQ---SRNEIDAFYSFIEMRR-----EGVD-------IVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 202 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~-------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
...+......+.. .|++++|+..|+++.+ .... |.+..++..+...+...|+++.|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555554 8999999999999988 3111 13456778888899999999999999999998
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.... ..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+.... +..++.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHH
Confidence 8644 88899999999999999999999998764 36788999999999999999999999999986433 567888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD----EPTWAALLS 415 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~ 415 (610)
.+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ +..|+ ...|..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999874 3445688999999999999999999999887 22233 348888999
Q ss_pred HHHh---cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 416 ACKH---HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 416 ~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+.. .|++++|...++++++.+|+++.++..++.+|.+.|++++|.+.++...+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999999999999999999999999988654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.2e-22 Score=211.31 Aligned_cols=308 Identities=10% Similarity=0.016 Sum_probs=232.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHH
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVS 210 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 210 (610)
+.+...+..+...|.+.|++++|..+|+++. ..+..+|..+...|.+.|++++|...|+++. ..+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3445555566666666666666666666554 2245566666666666666666666666543 224566777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCH---hHHHHH------------HHHHhccccHHHHHHHHHHHHHhCCCCchhH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDP---LVLSSI------------VGACANFAVLELGKQIHGLVIALGYESCLFI 275 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (610)
.|.+.|++++|++.|+++.+... .+. ..+..+ ...+...|+++.|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 77777777777777777776541 233 444433 334777888888888888888764 456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH------
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGL------ 345 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l------ 345 (610)
+..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++... .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 88899999999999999999998863 47889999999999999999999999999875 344 3344333
Q ss_pred ------HHHHhccCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037713 346 ------IYACSHVGLVGKGRKLFKSMIEDYGITPS--LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLS 415 (610)
Q Consensus 346 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 415 (610)
..+|.+.|++++|..+|+.+.+...-.|. ..+|..+..++.+.|++++|.+.++++ ...| +...|..+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999999874221111 458899999999999999999999987 4445 6889999999
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
+|...|++++|...++++++++|+++..+..++.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 9999999999999999999999999999988883
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-22 Score=215.08 Aligned_cols=435 Identities=9% Similarity=-0.056 Sum_probs=310.4
Q ss_pred hhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC--CC-CcchHHHHHHHHH
Q 037713 4 SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QR-DHVSWASILTAYN 80 (610)
Q Consensus 4 ~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~ 80 (610)
..+...-..+...|+++.|...+..+++.. |++..+..+..+|.+.|++++|.+.|+++. .| +..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 344455566677788888888888888775 577788888888888888888888887765 23 5567888888888
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHH---HHHHHhCCChH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL---VDMYAKCGLPN 157 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~ 157 (610)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+.+.+..|+....+.- ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 8888888888888887754 334444444444443332222232222222111111111100000 00000111111
Q ss_pred HHHHHHHhcC---------CC-ChhhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHHH
Q 037713 158 NARAVFDSIK---------LK-NSVSWTAMLSAYAR---SGRKKDAMEIFEQAPV----------------R-NLFLWTA 207 (610)
Q Consensus 158 ~A~~~~~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~ 207 (610)
.+...+.... .+ +...+......+.. .|++++|...|+++.. + +..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1111111111 11 23444444444444 7889999888877544 1 3467888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 287 (610)
+...+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999998876 448888889999999999999999999988764 446778899999999999
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037713 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 288 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
++++|...|++..+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998753 467889999999999999999999999998763 23567888899999999999999999999
Q ss_pred hHHhcCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 365 MIEDYGITPS----LQHYTCLLDLLSR---SGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 365 ~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..++..+...+...|++++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8775333333 4489999999999 99999999999987 3334 577888899999999999999999999999
Q ss_pred CCCCCCcchHhH
Q 037713 436 LKPEDPSSYILL 447 (610)
Q Consensus 436 ~~p~~~~~~~~l 447 (610)
++|+++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999887666554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.3e-21 Score=200.24 Aligned_cols=344 Identities=9% Similarity=0.010 Sum_probs=226.5
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037713 68 DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147 (610)
Q Consensus 68 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 147 (610)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 55668888888888888888888888887743 3467777788888888888888888888888776 55677888888
Q ss_pred HHHHhCCChHHHHHHHHhcCCCC---h---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 037713 148 DMYAKCGLPNNARAVFDSIKLKN---S---VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221 (610)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 221 (610)
.+|.+.|++++|.+.|+++...+ . ..|..++..+...+ +..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHH
Confidence 88888888888888888876432 2 55555544421111 11222334445555555
Q ss_pred HHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037713 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301 (610)
Q Consensus 222 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 301 (610)
+..|+++.+.. |.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 163 IAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555443 1345555555555555555555555555555442 23455555666666666666666666665542
Q ss_pred --C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCCHHHHHHH
Q 037713 302 --K-DVVSWTSI------------IVGTAQHGQAEETLALYDEMVSAGVKPN-----EVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 302 --~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
| +...+..+ ...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 23333333 67778888888888888888774 344 34677777888888888888888
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----c
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSA------------CKHHR-----N 422 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~g-----~ 422 (610)
++.+.+. .+.+...|..+..+|.+.|++++|...++++ ...|+ ...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 8887763 2345678888888888888888888888877 55565 4444444422 33333 5
Q ss_pred hhHHHHHHHH-HhcCCCCC
Q 037713 423 TEMGTRVANH-LLSLKPED 440 (610)
Q Consensus 423 ~~~a~~~~~~-~~~~~p~~ 440 (610)
.+++.+.+++ .++..|++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 6777888886 66777764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.1e-21 Score=205.30 Aligned_cols=420 Identities=10% Similarity=-0.018 Sum_probs=297.1
Q ss_pred chHHHHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHH
Q 037713 39 PLPNTLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
..+..+...|.+.|++++|.+.|+++. ..+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHH
Confidence 345556666666777777777776654 2355666666777777777777777777766643 22455566666666
Q ss_pred hccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCCHHH
Q 037713 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK------NSVSWTAMLSAYARSGRKKD 189 (610)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~ 189 (610)
...|++++|...++ .+.. .|+. .+..+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 67777777777664 3222 1211 122233444444556666666666432 12223444555566666677
Q ss_pred HHHHHhhCCCCChh---hHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCC-----HhHHHHHHHHHhcccc
Q 037713 190 AMEIFEQAPVRNLF---LWTALVSGLVQS--------RNEIDAFYSFIEMRREGVDIVD-----PLVLSSIVGACANFAV 253 (610)
Q Consensus 190 A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~-----~~t~~~ll~~~~~~~~ 253 (610)
+...+......+.. .+..+...+... |++++|+.+|+++.+.....++ ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 66666665544332 333333333322 4789999999999876632111 2346666677888899
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037713 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEM 330 (610)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (610)
++.|...+..+.+.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|++.
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4478888999999999999999999998863 46788999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-
Q 037713 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEP- 405 (610)
Q Consensus 331 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p- 405 (610)
.+.... +..++..+..++...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..+
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 886432 5678888999999999999999999999884 3456778999999999999999999999887 1111
Q ss_pred ---CHHHHHHHHHHHHhc----------CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 406 ---DEPTWAALLSACKHH----------RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 406 ---~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
....+..+...+... |++++|...++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222344455667777 99999999999999999999999999999999999999999999988754
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.3e-20 Score=198.54 Aligned_cols=428 Identities=9% Similarity=-0.025 Sum_probs=326.7
Q ss_pred hhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHH
Q 037713 4 SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYN 80 (610)
Q Consensus 4 ~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 80 (610)
..|..+-..+.+.|+++.|...+..+++.. +.++..+..+...|.+.|++++|.+.|+++. ..+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 345555667788899999999999999886 3467889999999999999999999999875 336778999999999
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 158 (610)
+.|++++|+..|+.+ . ..|+... ..+..+...+....|...+..+++.. ..+........+..|....+.+.
T Consensus 105 ~~g~~~~A~~~~~~~-~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HcCCHHHHHHHHHHH-h---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999744 3 2333222 11223334445677888888886641 11112223445566777888888
Q ss_pred HHHHHHhcCCCChh---hHHHHHHHHHh--------cCCHHHHHHHHhhCCCCC----------hhhHHHHHHHHHhCCC
Q 037713 159 ARAVFDSIKLKNSV---SWTAMLSAYAR--------SGRKKDAMEIFEQAPVRN----------LFLWTALVSGLVQSRN 217 (610)
Q Consensus 159 A~~~~~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~ 217 (610)
+...+......+.. .+..+...+.. .|++++|..+|+++...+ ..+|..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 88877777655443 34444433322 258899999998876432 2256777788999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 297 (610)
+++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+
T Consensus 259 ~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999876 668889999999999999999999999999876 4567889999999999999999999999
Q ss_pred hcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-
Q 037713 298 RMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP- 373 (610)
Q Consensus 298 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~- 373 (610)
+..+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8863 467889999999999999999999999998864 33567888899999999999999999999876421111
Q ss_pred ---CHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 374 ---SLQHYTCLLDLLSRS----------GHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 374 ---~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
....+..+...|.+. |++++|...|++. ...| +...|..+...+...|++++|...+++++++.|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223355566778888 9999999999988 3334 578889999999999999999999999999999
Q ss_pred CCCcc
Q 037713 439 EDPSS 443 (610)
Q Consensus 439 ~~~~~ 443 (610)
.++..
T Consensus 494 ~~~~~ 498 (537)
T 3fp2_A 494 TMDEK 498 (537)
T ss_dssp -CHHH
T ss_pred CcHHH
Confidence 87554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.6e-18 Score=170.38 Aligned_cols=314 Identities=10% Similarity=-0.027 Sum_probs=199.3
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
.+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++....
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 66 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------- 66 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Confidence 34444444555555555555555555443 334444455555555555555555544443210
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----CHhHHHHH------------HHHHhc
Q 037713 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV----DPLVLSSI------------VGACAN 250 (610)
Q Consensus 187 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~t~~~l------------l~~~~~ 250 (610)
...+...|..+...+...|++++|+..|+++.+.. | +...+..+ ...+..
T Consensus 67 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 67 -----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234455555556666666666666666665543 3 22222222 355566
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 037713 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
.|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777776666654 34556677777777778888888877777653 35677778888888888888888888
Q ss_pred HHHHHcCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 037713 328 DEMVSAGVKPNEVTFV------------GLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 393 (610)
++..+.... +...+. .+...+.+.|++++|...++.+.+...-.+.. ..+..+...|.+.|++++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 887765321 222222 23566788889999999988887742211111 335567788888999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99888887 3344 6778888888889999999999999999999998887777776665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=5.9e-18 Score=169.55 Aligned_cols=295 Identities=9% Similarity=0.035 Sum_probs=240.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 037713 171 SVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247 (610)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 247 (610)
+..|..+...+.+.|++++|...|+++. ..+..+|..+...+...|++++|+..|+++.+.. |.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHH
Confidence 3445556666666667777777666543 3356788888999999999999999999998875 2577889999999
Q ss_pred HhccccHHHHHHHHHHHHHhCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHH
Q 037713 248 CANFAVLELGKQIHGLVIALGYE--SCLFISNAI------------VDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSI 310 (610)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 310 (610)
+...|+++.|...++.+.+.... .+...+..+ ...|...|++++|...|+++.+ .+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999876420 244455544 5889999999999999998863 477889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----------
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT----------- 379 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 379 (610)
...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998863 3468889999999999999999999999998742 23333333
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 380 -CLLDLLSRSGHLDEAENLIKAM-PFEPD-E----PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 380 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366799999999999999987 33444 2 234456778999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHhhC
Q 037713 453 SAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~ 470 (610)
..|++++|.+.++...+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998753
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.4e-18 Score=172.36 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=90.8
Q ss_pred hcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHH
Q 037713 49 GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128 (610)
Q Consensus 49 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 128 (610)
-+.|++++|.+.++++++|+ +|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37789999999999997765 899999999999999999999964 257779999999999999999999988
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH
Q 037713 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208 (610)
Q Consensus 129 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 208 (610)
....+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|.++ ..|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 877774 45688899999999999999999988864 67789999999999999999999999987 589999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 288 (610)
+.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCC
Confidence 99999999999999999988 4678888888888888888888543332 12222223346666666666
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHh
Q 037713 289 IIAAKDIFGRMRRK---DVVSWTSIIVGTAQ 316 (610)
Q Consensus 289 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 316 (610)
+++|..+++....- ....|+-|...|++
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 66666666655432 34455555544444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-17 Score=162.16 Aligned_cols=289 Identities=12% Similarity=-0.004 Sum_probs=180.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 216 (610)
+.+..++..+...+...|++++|.++|+++...+ ..+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----------------------------PFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCChhhHHHHHHHHHHhh
Confidence 4455556666666666666666666666554111 112233333444444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037713 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 217 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (610)
++++|+.+++++.+... .+...+..+...+...| +++.|...++.+.+.. +.+...+..+...|...|++++|...
T Consensus 71 ~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 71 KANELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp CHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 45555555544444331 23444444444455555 4555555555544432 22344556666666666666666666
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 037713 296 FGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG-- 370 (610)
Q Consensus 296 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 370 (610)
|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 666542 234566667777777777777777777776653 23566777777777777888888777777766321
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 371 -----ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 371 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 1334577888888888888888888888876 2233 46677888888888899999999999998888988888
Q ss_pred hHhHHHHh-hhhcch
Q 037713 444 YILLSNVY-ASAAMW 457 (610)
Q Consensus 444 ~~~l~~~~-~~~g~~ 457 (610)
+..++.++ ...|+.
T Consensus 307 ~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 307 VTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhCch
Confidence 88888877 444543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6.8e-16 Score=162.02 Aligned_cols=367 Identities=10% Similarity=-0.027 Sum_probs=285.8
Q ss_pred CCcchHHHHHHHHHc----CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc----cCCcHHHHHHHHHHHhcCCCC
Q 037713 67 RDHVSWASILTAYNQ----ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS----LGATRLGKQVHACFVLSPFCD 138 (610)
Q Consensus 67 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 138 (610)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 356666666666766 778888888888877755 55566666666666 778888888888887765
Q ss_pred ChhHHHHHHHHHHh----CCChHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHH
Q 037713 139 DDVVKSSLVDMYAK----CGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR----SGRKKDAMEIFEQAPV-RNLFLWTAL 208 (610)
Q Consensus 139 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 208 (610)
+...+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|.+.|++..+ .+..++..+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55666667777777 77888888888776643 56677777777776 7788888888877543 366788888
Q ss_pred HHHHHh----CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 209 VSGLVQ----SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 209 i~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
...|.. .+++++|++.|++..+.+ ++..+..+...+.. .++.++|...++...+.+ +...+..|.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 888887 889999999999888764 45566666666665 788999999999888765 456677788
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 281 DMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQH-----GQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 281 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
.+|.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88888 8999999999998875 4677888888888887 89999999999998875 4566777777777
Q ss_pred ccC---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 037713 351 HVG---LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAMPFEPDEPTWAALLSACKH---- 419 (610)
Q Consensus 351 ~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~---- 419 (610)
..| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 766 789999999999873 467888899999988 89999999999988223367788888888887
Q ss_pred cCchhHHHHHHHHHhcCCCC---CCcchHhHHHHhhhh
Q 037713 420 HRNTEMGTRVANHLLSLKPE---DPSSYILLSNVYASA 454 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 454 (610)
.++.++|...|+++.+.+|+ ++.+...|+.++...
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 89999999999999998854 667777777776643
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=8.5e-18 Score=169.42 Aligned_cols=278 Identities=11% Similarity=-0.032 Sum_probs=207.1
Q ss_pred cCCHHHHHH-HHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHH
Q 037713 184 SGRKKDAME-IFEQAPVR-------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255 (610)
Q Consensus 184 ~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 255 (610)
.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. |.+...+..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence 355666666 55543311 23456677777777777777777777777654 246667777777777777777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHH---------------HHHHHHhc
Q 037713 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTS---------------IIVGTAQH 317 (610)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 317 (610)
.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777777777664 34566777777777777888887777777653 2 2222211 13333488
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 318 GQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...|..+...|.+.|++++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998864321 5788999999999999999999999999874 34467899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-----------CcchHhHHHHhhhhcchhHHHHH
Q 037713 397 LIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-----------PSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 397 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
.|+++ ...| +...+..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3344 57889999999999999999999999999888876 68899999999999999999988
Q ss_pred HHH
Q 037713 464 RKL 466 (610)
Q Consensus 464 ~~~ 466 (610)
++.
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 663
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.8e-16 Score=166.72 Aligned_cols=406 Identities=11% Similarity=0.009 Sum_probs=224.8
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHH
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~ 113 (610)
+...|..++. +.+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|+++.. ..|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCChHHHHHHHH
Confidence 5667888887 4778899999999988764 3 555688888888889999999999999887 4577666666664
Q ss_pred HH-hccCCcHHHHH----HHHHHHhc-CCCC-ChhHHHHHHHHHHh---------CCChHHHHHHHHhcCC-CCh---hh
Q 037713 114 AC-GSLGATRLGKQ----VHACFVLS-PFCD-DDVVKSSLVDMYAK---------CGLPNNARAVFDSIKL-KNS---VS 173 (610)
Q Consensus 114 ~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~ 173 (610)
.. ...|+.+.|++ +|+..++. |..| +...|...+....+ .|+++.|..+|++... |+. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566666655 66666543 5443 45677777776654 5778888888887664 211 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HcCC--CCCC--------
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR------REGV--DIVD-------- 237 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~--~~p~-------- 237 (610)
|..........|. ..+..++. ...+++.+|..++.+.. +..+ .||+
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3222211000000 00111110 01223344444443321 1100 0122
Q ss_pred HhHHHHHHHHHhc----cccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 037713 238 PLVLSSIVGACAN----FAVL----ELGKQIHGLVIALGYESCLFISNAIVDMYAK-------CSDII-------AAKDI 295 (610)
Q Consensus 238 ~~t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~ 295 (610)
...|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 1223322222211 1111 24455555555542 3345556656555554 46654 66666
Q ss_pred HHhcCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 296 FGRMRR---K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 296 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+...+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 666543 2 4556666666666666666666666666653 333 235666666666666666666666666542
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc----
Q 037713 370 GITPSLQHYTCLLDL-LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS---- 442 (610)
Q Consensus 370 ~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 442 (610)
.+.+...|...... +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+|+++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 11122333222222 23466666666666655 2223 3556666666666666777777777766666554443
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+...+......|+.+.+.++.+.+.+
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555566666666666666544
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=7.9e-17 Score=159.43 Aligned_cols=264 Identities=10% Similarity=0.026 Sum_probs=230.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 037713 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279 (610)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (610)
.+...+..+...+...|++++|+++|+++.+... .+...+..++.++...|+++.|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3566778888899999999999999999998763 566677778888899999999999999999875 4567888999
Q ss_pred HHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 280 VDMYAKCS-DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 280 i~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
...|...| ++++|...|++..+ .+...|..+...+...|++++|+..|++..+.... +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998864 35788999999999999999999999999886433 456677799999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCchh
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF----------EPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~~ 424 (610)
++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999773 4556789999999999999999999999877 11 334678899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+|...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999988754
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.6e-15 Score=160.86 Aligned_cols=377 Identities=7% Similarity=0.041 Sum_probs=256.9
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037713 68 DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147 (610)
Q Consensus 68 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 147 (610)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+|+++++.. |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6778988888 47789999999999999874 23356678888888888999999999999998764 5777777776
Q ss_pred H-HHHhCCChHHHHH----HHHhcC------CCChhhHHHHHHHHHh---------cCCHHHHHHHHhhCCCCChhhHHH
Q 037713 148 D-MYAKCGLPNNARA----VFDSIK------LKNSVSWTAMLSAYAR---------SGRKKDAMEIFEQAPVRNLFLWTA 207 (610)
Q Consensus 148 ~-~~~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 207 (610)
. .....|+.++|.+ +|+... ..+...|...+....+ .|+++.|..+|++...........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 5 3345677777665 555432 1245566666655443 456666666666543310000001
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH------HhC---CCCc------
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI------ALG---YESC------ 272 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~------ 272 (610)
+...|.. +++.. +..+...++. ...+.+..|..++.... +.. ++|+
T Consensus 167 ~~~~~~~---~e~~~--------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 167 LWRDYNK---YEEGI--------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHH---HHHHH--------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHH---HHHhh--------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 1111110 00000 0000111110 13456677777666532 111 2443
Q ss_pred --hhHHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CChhHHHHHHHHHHh-------cCChH-------HHHH
Q 037713 273 --LFISNAIVDMYAKC----SDI----IAAKDIFGRMRR---KDVVSWTSIIVGTAQ-------HGQAE-------ETLA 325 (610)
Q Consensus 273 --~~~~~~li~~y~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~ 325 (610)
...|...+...... ++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 35666666544332 232 477778887764 467889998888876 79987 8999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 037713 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-L-QHYTCLLDLLSRSGHLDEAENLIKAM-P 402 (610)
Q Consensus 326 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~ 402 (610)
+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++. .
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999988631233578888999999999999999999999987 3454 3 58999999999999999999999988 4
Q ss_pred CCCC-HHHHHHHHHH-HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 403 FEPD-EPTWAALLSA-CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 403 ~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
..|+ ...|...... +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+++.....+
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 4443 2333322222 3468999999999999999999999999999999999999999999999987764
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.9e-17 Score=166.77 Aligned_cols=261 Identities=10% Similarity=-0.060 Sum_probs=206.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
+...|..+...+.+.|++++|++.|+++.+.. |.+...+..+..++...|+++.|...++.+.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44567778888888888888888888887765 2567778888888888888888888888887764 44577788888
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKD-------------VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLI 346 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll 346 (610)
..|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 88888888888888888876421 223345578889999999999999999886432 2688899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
..+...|++++|...|+.+.+. .+.+..+|..+..+|.+.|++++|.+.|+++ ...| +..+|..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999874 3456789999999999999999999999988 4445 4788999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 425 MGTRVANHLLSLKPE------------DPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
+|...+++++++.|+ +...+..|..++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988765 356788999999999999998877554
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=8.4e-15 Score=161.40 Aligned_cols=284 Identities=13% Similarity=0.098 Sum_probs=223.8
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5566677788888888888864 22222233332 6778888888888663 4678889999999999999999999
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037713 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305 (610)
Q Consensus 226 ~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 305 (610)
.+. .|...|..++.+|.+.|+++++.+++..+.+.. ++..+.+.++.+|++.+++++...+. ..++..
T Consensus 1129 iKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A 1129 IKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred Hhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence 653 678888889999999999999999999888765 44444556999999999988654443 456777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
.|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence 8888999999999999999999984 47889999999999999999998776 3468888888999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh--cchhHHHHH
Q 037713 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA--AMWQHVSKV 463 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~ 463 (610)
...|++..|....... .-++..+..++..|.+.|.+++|+.+++..++++|.+...|..|+.+|++. ++..++.+.
T Consensus 1261 ve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998877653 345556678889999999999999999999999998888888888887654 445555554
Q ss_pred HH
Q 037713 464 RK 465 (610)
Q Consensus 464 ~~ 465 (610)
|.
T Consensus 1339 f~ 1340 (1630)
T 1xi4_A 1339 FW 1340 (1630)
T ss_pred HH
Confidence 44
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=8.1e-16 Score=149.16 Aligned_cols=266 Identities=8% Similarity=0.001 Sum_probs=194.0
Q ss_pred hcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH
Q 037713 183 RSGRKKDAMEIFEQAPVRNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 258 (610)
..|++..|+..+++....++ .....+..+|...|++++|+..++. . .+|+..++..+...+...++.+.|.
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34555555555554443321 1233445566666666666654433 1 2255556666666666666666666
Q ss_pred HHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037713 259 QIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337 (610)
Q Consensus 259 ~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 337 (610)
+.++.+...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 66666666553 33566677778889999999999999998 5678899999999999999999999999999863 5
Q ss_pred CHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037713 338 NEVTF---VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAA 412 (610)
Q Consensus 338 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 412 (610)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.|++. ...| +..++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 54211 12334445669999999999999985 5668899999999999999999999999997 4445 5778999
Q ss_pred HHHHHHhcCchhH-HHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 413 LLSACKHHRNTEM-GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 413 ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
++..+...|+.++ +.++++++++++|+++. +.+...+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 9999999999875 67899999999999873 45667777777776543
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6.1e-15 Score=162.49 Aligned_cols=379 Identities=12% Similarity=0.076 Sum_probs=290.2
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCC-CC-----CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHH
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMP-QR-----DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ 110 (610)
++.--...+..|...|.+.+|.++++++. +| +...-|.++.+..+. +..+..+..++... ....-
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHH
Confidence 33344566778888888888888888765 22 224456666666666 44555555554432 11333
Q ss_pred HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 037713 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 190 (610)
+...|...|.+++|..+|++.. ......+.+ +-..|++++|.++.++. .+..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHH
Confidence 6667788899999999998852 111222223 23788999999999977 4578899999999999999999
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 037713 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270 (610)
Q Consensus 191 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (610)
...|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.++.+|++.++++....+. + .
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 9999774 678889999999999999999999999888765 33333335888999999888655443 2 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45667778999999999999999999985 58999999999999999999999977 36789999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCchhHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKH--HRNTEMG 426 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a 426 (610)
..|++..|...... +..+...+..++..|.+.|.+++|..+++.. +..|. ...|.-|...+++ .++..++
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999887553 3345778889999999999999999999877 65554 3455555555554 4567777
Q ss_pred HHHHHHHhcCCC-----CCCcchHhHHHHhhhhcchhHHHHH
Q 037713 427 TRVANHLLSLKP-----EDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 427 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
.+.|..-..+.| .+...|..++.+|.+.|.|+.|...
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 777777666655 5667888999999999999999853
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=7.6e-15 Score=154.01 Aligned_cols=363 Identities=10% Similarity=-0.018 Sum_probs=303.4
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhc----cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----CCChHH
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGS----LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK----CGLPNN 158 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~ 158 (610)
.+++.+....+.| |...+..+...+.. .++++.|...+....+.| +...+..|...|.. .++.++
T Consensus 25 ~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3456666665554 66777777777776 789999999999999875 56788889999999 999999
Q ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHH
Q 037713 159 ARAVFDSIKLK-NSVSWTAMLSAYAR----SGRKKDAMEIFEQAPVR-NLFLWTALVSGLVQ----SRNEIDAFYSFIEM 228 (610)
Q Consensus 159 A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m 228 (610)
|.+.|++..+. +...+..|...|.. .+++++|...|++.... +..++..+...|.. .+++++|++.|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999988744 77888889899988 89999999999986544 66788888888887 88999999999999
Q ss_pred HHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC
Q 037713 229 RREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK----CSDIIAAKDIFGRMR 300 (610)
Q Consensus 229 ~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~ 300 (610)
.+.+ +...+..+...+.. .++.++|...+....+.+ +...+..|..+|.. .+++++|...|++..
T Consensus 178 ~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 178 AEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8864 56677777777777 899999999999999876 56678888899987 889999999999886
Q ss_pred C-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcC
Q 037713 301 R-KDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV-----GLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 301 ~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~ 370 (610)
+ .+..++..+...|.. .++.++|+.+|++..+.| +...+..+...+... +++++|..+|+...+.
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-- 325 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-- 325 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--
Confidence 5 467788888888888 899999999999998764 456677777778777 8999999999999873
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcc
Q 037713 371 ITPSLQHYTCLLDLLSRSG---HLDEAENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.+...+..|..+|.+.| ++++|.+.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++.+
T Consensus 326 --~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 --GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp --TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred --CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 34567888888888867 889999999988223578888889888888 899999999999998865 4678
Q ss_pred hHhHHHHhhh----hcchhHHHHHHHHHhhCCC
Q 037713 444 YILLSNVYAS----AAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 444 ~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 472 (610)
+..|+.+|.. .+++++|.+.++...+.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999998 8999999999999887663
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.9e-17 Score=162.95 Aligned_cols=345 Identities=12% Similarity=0.082 Sum_probs=174.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 94 (610)
..+++++|.+..+.+ +++.+|+.|..++.+.|++++|.+.|.+. +|...|..++.++.+.|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456688888888877 34569999999999999999999999764 5777999999999999999999997776
Q ss_pred hHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhH
Q 037713 95 MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174 (610)
Q Consensus 95 m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 174 (610)
.++. .|++.+.+.++.++.+.|+++++.+++. .|+..+|+.+.+.|...|++++|...|..+ ..|
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 6662 4567889999999999999999888874 477789999999999999999999999988 489
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccH
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 254 (610)
..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +. .++.-...++..|.+.|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HH-hCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999999998 4899999999999999999999665554 22 3444456788999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhcCChHHHH
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKC--SDIIAAKDIFGRMRR--------KDVVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~ 324 (610)
+++..+++...... +....+++-|.-+|++- +++.+..+.|..-.. .+...|..+.-.|.+.++++.|.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999988665 55678888888888875 578888888875442 25678999999999999999998
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037713 325 ALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402 (610)
Q Consensus 325 ~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (610)
.. |.+. ....+...|.-++. +..+.+--.+...-.... .|. ..+-|+.++...=+...+..+|++.+
T Consensus 303 ~t---m~~h~~~a~~~~~f~~~~~---kv~n~elyYkai~fyl~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 303 IT---MMNHPTDAWKEGQFKDIIT---KVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HH---HHHSTTTTCCHHHHHHHHH---HCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HH---HHhCChhhhhhHHHHHHHh---chhHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 74 5443 23344555555443 334433322222222221 233 35566666666666667777776664
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.3e-16 Score=158.82 Aligned_cols=253 Identities=13% Similarity=0.025 Sum_probs=120.9
Q ss_pred CCCchHHHH-HHHHhHHCCCCCC--ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH
Q 037713 82 ANLPQKTIS-IFSTMLALDKLQP--DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 82 ~g~~~~A~~-~~~~m~~~~~~~p--d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 158 (610)
.|++++|++ .|++......-.| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6665544221111 23445556666666666666666666666654 4455566666666666666666
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH
Q 037713 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238 (610)
Q Consensus 159 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 238 (610)
|...|+++... ...+..+|..+...|...|++++|++.|+++...... +.
T Consensus 117 A~~~~~~al~~----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~ 166 (368)
T 1fch_A 117 AISALRRCLEL----------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--YA 166 (368)
T ss_dssp HHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TG
T ss_pred HHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cH
Confidence 66665543210 1224455566666666666666666666666665422 11
Q ss_pred hHHHH---------------HHHHHhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 037713 239 LVLSS---------------IVGACANFAVLELGKQIHGLVIALGYES-CLFISNAIVDMYAKCSDIIAAKDIFGRMRR- 301 (610)
Q Consensus 239 ~t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 301 (610)
..+.. .+..+...|+++.|...+..+.+..... +..++..+...|.+.|++++|...|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11111 1222224555555555555555443211 344444455555555555555555544431
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 302 --KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 302 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+.+.
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 233444444445555555555555555444431 1233444444444444455555444444443
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.2e-15 Score=155.18 Aligned_cols=371 Identities=9% Similarity=-0.041 Sum_probs=194.9
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHC-----C-CCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcC------
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLAL-----D-KLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSP------ 135 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 135 (610)
...||.|...+...|++++|++.|++..+. + ...| ...+|..+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777777777777777765431 0 0122 23456666666667777777776666655421
Q ss_pred CC-CChhHHHHHHHHHHhC--CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH-
Q 037713 136 FC-DDDVVKSSLVDMYAKC--GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG- 211 (610)
Q Consensus 136 ~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~- 211 (610)
.. ....+++.+..++.+. +++++|...|++..+. ...++..+..+...
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIAS 182 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHH
Confidence 01 1123333333333332 3455555555544310 01122233332222
Q ss_pred --HHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 212 --LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 212 --~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
+...++.++|++.|++..+... .+...+..+...+.. .++.+.|...++.+.+.. +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCS--SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcCC--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 2234445555555555554431 333344333333322 234445555555555443 2334455555555555
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 286 CSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQ-------------------HGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.|++++|...|++..+ | +..+|..+...|.. .+..++|...|++..+... .+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhh
Confidence 6666666555555432 2 33444444433321 2345678888888776532 2455677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLD-LLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKH 419 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 419 (610)
.+...+...|++++|...|++..+. ...|.. ..+..+.. .+...|+.++|...|++. .+.|+...+...
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------ 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 7888999999999999999988763 222221 12333332 245779999999999887 666765443322
Q ss_pred cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEE
Q 037713 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 481 (610)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 412 ---~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34556778888899999999999999999999999999999999877655444444543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=4.1e-16 Score=154.02 Aligned_cols=259 Identities=9% Similarity=-0.082 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (610)
..|..+...+...|++++|+.+|+++.+... .+...+..+..++...|+++.|...++.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455555666666666666666666665542 355566666666666666666666666666653 3345566666777
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037713 283 YAKCSDIIAAKDIFGRMRR--K-DVVSWTSI--------------IV-GTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 344 (610)
|...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+... .+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 7777777777777766543 1 22222222 22 36778899999999999988643 36788899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN 422 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 422 (610)
+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999874 3456788999999999999999999999987 3334 57888999999999999
Q ss_pred hhHHHHHHHHHhcCCCC------------CCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 423 TEMGTRVANHLLSLKPE------------DPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+++|...++++++..|. ++..+..++.+|...|++++|..+++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999888 6788999999999999999999887643
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=3e-16 Score=158.04 Aligned_cols=156 Identities=13% Similarity=0.040 Sum_probs=93.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh
Q 037713 245 VGACANFAVLELGKQIHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQA 320 (610)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 320 (610)
...+...|++++|...++.+.+.... .+..++..+...|.+.|++++|...|++..+ .+..+|+.+...|...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34444445555555555544444311 1345555566666666666666666665542 3456677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----------CCCHHHHHHHHHHHHhcCC
Q 037713 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI----------TPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 321 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~ 390 (610)
++|+..|++..+.. +.+..++..+..+|...|++++|...|+.+.+...- ..+...|..+..++...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 77777777776642 224666777777777777777777777776653211 0125678888888888888
Q ss_pred HHHHHHHHHhC
Q 037713 391 LDEAENLIKAM 401 (610)
Q Consensus 391 ~~~A~~~~~~m 401 (610)
.+.|..+.++-
T Consensus 343 ~~~a~~~~~~~ 353 (365)
T 4eqf_A 343 PELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 88888877653
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=177.23 Aligned_cols=132 Identities=12% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 342 FVGLIYACSHVGL-VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 342 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
|++||.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999998 57899999999996 99999999999999888876666665554444
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.4e-15 Score=147.40 Aligned_cols=245 Identities=10% Similarity=-0.029 Sum_probs=202.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCH--hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
|.-....|++++|+..++...... |+. .....+..++...|+++.|...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~---p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS---PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS---HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC---chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 445677899999999888764433 443 3556778899999999999876543 2466788889999999999
Q ss_pred CCHHHHHHHHHhcC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037713 287 SDIIAAKDIFGRMR----RK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 287 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
|+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999874 24 567788888999999999999999987 46788899999999999999999999
Q ss_pred HHHhHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 362 FKSMIEDYGITPSLQ---HYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
++.+.+. .|+.. ....++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 35432 1233445555679999999999998 33457888999999999999999999999999999
Q ss_pred CCCCCcchHhHHHHhhhhcchhH-HHHHHHHHhh
Q 037713 437 KPEDPSSYILLSNVYASAAMWQH-VSKVRKLMSV 469 (610)
Q Consensus 437 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 469 (610)
+|+++.++..++.++...|++++ +.++++.+.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999986 5678877764
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.2e-14 Score=143.39 Aligned_cols=259 Identities=11% Similarity=-0.001 Sum_probs=129.9
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 108 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
+..+...+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------- 83 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARM------------------- 83 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Confidence 4444444555555555555555555443 33444444455555555555544444443321
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHH--------------HH-HHhccc
Q 037713 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI--------------VG-ACANFA 252 (610)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l--------------l~-~~~~~~ 252 (610)
....+..+|..+...|...|++++|++.|+++.+... .+...+..+ .. .+...|
T Consensus 84 ---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 84 ---------LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHH
T ss_pred ---------cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence 0122445666666667777777777777777666542 122222222 11 245556
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDE 329 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (610)
+++.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665543 22445555555555556666666555555432 2344555555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-----------SLQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 330 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
+.+.. +.+..++..+..++...|++++|.+.++.+.+... .. +...|..+..+|.+.|++++|..++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55432 12344555555555555555555555555544210 00 2344455555555555555555554
Q ss_pred Hh
Q 037713 399 KA 400 (610)
Q Consensus 399 ~~ 400 (610)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=1e-14 Score=152.32 Aligned_cols=382 Identities=9% Similarity=-0.056 Sum_probs=234.0
Q ss_pred CCCchHHHHHHHhhcCCChHHHHHHHccCC-----------CC-CcchHHHHHHHHHcCCCchHHHHHHHHhHHC-----
Q 037713 36 QYGPLPNTLIDAYGKCDLVQYAHHLLEEMP-----------QR-DHVSWASILTAYNQANLPQKTISIFSTMLAL----- 98 (610)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 98 (610)
....+||.|...|...|+.++|++.|++.. .| ..++|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345679999999999999999999987642 22 4568999999999999999999999887642
Q ss_pred CCCCC-ChhhHHHHHHHHhc--cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH---HHhCCChHHHHHHHHhcC---CC
Q 037713 99 DKLQP-DHFVFASLVKACGS--LGATRLGKQVHACFVLSPFCDDDVVKSSLVDM---YAKCGLPNNARAVFDSIK---LK 169 (610)
Q Consensus 99 ~~~~p-d~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~---~~ 169 (610)
+...+ ...++.....++.. .+++++|...|+++++.. |.+...+..+..+ +...++.++|.+.|++.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 10122 23455555444443 457899999999999875 4456666666555 445677888888887654 33
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH
Q 037713 170 NSVSWTAMLSAYAR----SGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242 (610)
Q Consensus 170 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~ 242 (610)
+..++..+...+.. .|+.++|.+.+++.. ..+...+..+...|...|++++|++.|++..+..+ .+...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP--NNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--ChHHHHH
Confidence 55666666555544 456778888887653 34567788888899999999999999998887652 4555555
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC
Q 037713 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQ 319 (610)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 319 (610)
.+..++...+....+.. ...........+..+.|...|++.. ..+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 55544432211111000 0001111111233567777777654 2456788889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 320 AEETLALYDEMVSAGVKPNEV--TFVGLIY-ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
+++|+..|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+........ ..+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHH
Confidence 999999999998865443321 2222222 34578999999999998876 455543322222 23333
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 397 LIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 397 ~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
++++. ... .+..+|..|...+...|++++|++.|+++++++|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44433 222 35678999999999999999999999999999998887766554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=172.69 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVS---AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
..+||+||.+|++.|+.++|.++|++|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+. |+.||..+|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999886 99999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-cCCCC-----CCcchHhHHHH
Q 037713 381 LLDLLSRSGHL-DEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPE-----DPSSYILLSNV 450 (610)
Q Consensus 381 li~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~-----~~~~~~~l~~~ 450 (610)
||+++++.|+. ++|.++|++| ++.||..+|++++.++.+.+ .++..+++. +..|+ ...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 7899999999 99999999999997665443 333333332 22221 13345578888
Q ss_pred hhhhc
Q 037713 451 YASAA 455 (610)
Q Consensus 451 ~~~~g 455 (610)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88765
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.9e-14 Score=132.34 Aligned_cols=216 Identities=9% Similarity=-0.030 Sum_probs=153.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhHHHHH
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K----D----VVSWTSI 310 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 310 (610)
+..+...+...|+++.|...+..+.+.. .+..++..+...|...|++++|...|++..+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444444 3445555666666666666666666665542 1 1 4677778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
...|...|++++|+..|++..+. .|+.. .+...|++++|...++.+.+ ..+.+...+..+...|.+.|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 34432 34556778888888888766 233345778888888888899
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 391 LDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 391 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
+++|...+++. ... .+..+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++...
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998888887 323 3577788888888899999999999999998889888888899999999999999998888775
Q ss_pred h
Q 037713 469 V 469 (610)
Q Consensus 469 ~ 469 (610)
+
T Consensus 235 ~ 235 (258)
T 3uq3_A 235 T 235 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4.2e-14 Score=130.83 Aligned_cols=195 Identities=12% Similarity=0.007 Sum_probs=155.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 45667778888888899999999999988754 3678888899999999999999999999888632 2567888888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037713 347 YACSHV-----------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALL 414 (610)
Q Consensus 347 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 414 (610)
.++... |++++|...+++..+. -+.+...+..+..+|...|++++|...|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999874 3345788999999999999999999999987 2226888999999
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
..+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887764
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.1e-13 Score=132.87 Aligned_cols=242 Identities=7% Similarity=-0.055 Sum_probs=183.7
Q ss_pred hCCChHHHHHHHHHHHHcCCC--CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVD--IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 291 (610)
..|++++|+..|+++.+.... |.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877765321 1245667777777788888888888888877764 3467788888888888999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 292 AKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 292 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
|...|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9988888763 36788999999999999999999999999885 455444455555667779999999999888774
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 369 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.+++...+. ++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 344444444 777788888899999999887 33332 577888899999999999999999999999997644
Q ss_pred chHhHHHHhhhhcchhHHHHHH
Q 037713 443 SYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999987765
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.5e-14 Score=132.90 Aligned_cols=233 Identities=11% Similarity=-0.039 Sum_probs=164.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC--Cc----hhHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE--SC----LFISN 277 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 277 (610)
.|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+.... ++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 45556666666666666666666666655 34556666666666666666666666666554211 11 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+...|.+.|++++|...|++..+ ++. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 777778888888888888777653 332 34556677888888888887752 22456677788888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
++|...++.+.+. .+.+...|..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888774 3446778888888888999999998888877 3334 4777888888899999999999999999
Q ss_pred hcCC------CCCCcchHhHHH
Q 037713 434 LSLK------PEDPSSYILLSN 449 (610)
Q Consensus 434 ~~~~------p~~~~~~~~l~~ 449 (610)
+++. |++...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 8887 766555544443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.7e-13 Score=131.32 Aligned_cols=241 Identities=10% Similarity=-0.021 Sum_probs=125.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhc
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC--LFISNAIVDMYAKC 286 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~ 286 (610)
...+...|++++|+..|++..+... .+...+..+..++...|+++.|...+..+.+.+..++ ...+..+...|.+.
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444331 2223344444444444444444444444444221111 12244555555555
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037713 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363 (610)
Q Consensus 287 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 363 (610)
|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.|+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555432 234555555566666666666666665555431 1234444444423333346666666666
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCchhHHHHHH
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRSGH---LDEAENLIKAM----PFEPD------EPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
.+.+. .+.+...+..+...+...|+ +++|...+++. ...|+ ...|..+...|...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66553 22234555556666665565 55555555444 11133 246677778888999999999999
Q ss_pred HHHhcCCCCCCcchHhHHHHhhhh
Q 037713 431 NHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 431 ~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
+++++++|+++.+...+..+....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999887776666555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1.3e-12 Score=134.96 Aligned_cols=377 Identities=11% Similarity=0.030 Sum_probs=191.5
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCCh---HHHHHHHccCCCCCcchHHHHHHHHHcCC----
Q 037713 11 RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLV---QYAHHLLEEMPQRDHVSWASILTAYNQAN---- 83 (610)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g---- 83 (610)
....+.|+++.|.+++....+.| ++..+..|-.+|...|+. ++|.+.|++..+.+...+..|...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 34455677777777777777665 334445555566666666 77777777666556666666666444444
Q ss_pred -CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCc---HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHH
Q 037713 84 -LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT---RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159 (610)
Q Consensus 84 -~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 159 (610)
++++|+..|++..+.| .| ..+..+...+...+.. ..+.+.+....+.| +......|...|...+.++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g--~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~- 159 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANG--EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ- 159 (452)
T ss_dssp HHHHHHHHHHHHHHHTT--CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG-
T ss_pred cCHHHHHHHHHHHHHCC--CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc-
Confidence 5567777777776655 12 2444444444433322 22333333333333 23344444455554444332
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCC
Q 037713 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR---NEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 160 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p 236 (610)
..+.+..++......++..+..|...|...| ++++|++.|++..+.|. +
T Consensus 160 --------------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~--~ 211 (452)
T 3e4b_A 160 --------------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT--V 211 (452)
T ss_dssp --------------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--S
T ss_pred --------------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC--H
Confidence 2344555566655556667777777777777 77788888888777763 4
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH-H-
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG-T- 314 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~- 314 (610)
+...+..+...+.... ...+++++|...|++....+...+..+... |
T Consensus 212 ~a~~~~~Lg~~y~~g~-------------------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 212 TAQRVDSVARVLGDAT-------------------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYD 260 (452)
T ss_dssp CHHHHHHHHHHHTCGG-------------------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-------------------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4444344444443320 001345555555554442234444444444 2
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-
Q 037713 315 -AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG-----LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR- 387 (610)
Q Consensus 315 -~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 387 (610)
...++.++|+.+|++..+.| +...+..|...|. .| ++++|..+|+... ..+...+..|..+|..
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRG 331 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCC
Confidence 34566677777777766654 4445555555554 33 6777777776653 3345666666666655
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcchHhHHHHh--hhhcchh
Q 037713 388 ---SGHLDEAENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSSYILLSNVY--ASAAMWQ 458 (610)
Q Consensus 388 ---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~ 458 (610)
..++++|...|++.-..-+......|...|.. .++.++|...++++.+.++.+ +...+..+. ...+...
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHH
Confidence 33777777777766212233344445544443 457788888888887766543 333333332 2334555
Q ss_pred HHHHHHHHHh
Q 037713 459 HVSKVRKLMS 468 (610)
Q Consensus 459 ~a~~~~~~m~ 468 (610)
+|.++.+..+
T Consensus 410 ~a~~~~~~~~ 419 (452)
T 3e4b_A 410 EGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=8.7e-13 Score=132.26 Aligned_cols=246 Identities=10% Similarity=0.032 Sum_probs=196.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc-HHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-LELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
...|+.+...+.+.|++++|++.|++..+.. |-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3567777788888888888888888888766 2567778888888888886 888888888888875 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-VGLVG 356 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 356 (610)
.+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 899999999999999988863 47788999999999999999999999999987443 67888888888888 66657
Q ss_pred HH-----HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 037713 357 KG-----RKLFKSMIEDYGITPSLQHYTCLLDLLSRSG--HLDEAENLIKAMPFEP-DEPTWAALLSACKHHR------- 421 (610)
Q Consensus 357 ~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g------- 421 (610)
+| +..|+..++. -+-+...|..+..+|.+.| ++++|.+.++++...| +...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 4788888763 2345678888888898888 6899999888874445 4667778888887764
Q ss_pred --chhHHHHHHHHH-hcCCCCCCcchHhHHHHhhh
Q 037713 422 --NTEMGTRVANHL-LSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 422 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 453 (610)
..++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999888888777766643
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=1.7e-12 Score=119.94 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...|..+...+.+.|++++|+..|++..+.. |.+...+..+..++.+.|++++|...++.+++.. +.+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555555555666666666666555543 2345555555555555555555555555555543 233445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 282 MYAKC-----------SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 282 ~y~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 666666666665542 245566666666666666666666666666655 45666666666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
++...|++++|...|+...+. -+.+...+..+..++.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666553 2334556666666666666666666666543
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=3.4e-12 Score=118.16 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVKPN-EVTFVGLIYAC 349 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 349 (610)
++..+...|...|++++|...|+++. ..+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 33344444444444444444444433 12445555566666666 666666666666665222233 44555666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCchhHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE--PDEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a 426 (610)
...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666666553 2234556666666666667777776666665 222 2444555555556666777777
Q ss_pred HHHHHHHhcCCCCCCcch
Q 037713 427 TRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~ 444 (610)
..+++.+.+..|+++...
T Consensus 202 ~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 777777666666665443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=3e-12 Score=121.08 Aligned_cols=206 Identities=11% Similarity=-0.003 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|...++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 45566666667777777777777776665541 334444444444444444444444444433332
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
..+...|..+...|...|++++|+++|+++...+..| +...+..+..++...|++++|..
T Consensus 102 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 102 -------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 1234445555555555566666666666555422233 23445555566666666666666
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
.++.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|+.++|.+.++++.+..|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66666553 2234556666666666667777776666665 2222 455556666666677777777777777777777
Q ss_pred CCCcc
Q 037713 439 EDPSS 443 (610)
Q Consensus 439 ~~~~~ 443 (610)
+++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 65443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=7e-13 Score=124.60 Aligned_cols=210 Identities=10% Similarity=0.034 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (610)
..|..+...+...|++++|+..|+++.+... .+.. ++..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~-----------------------------------~~~~la~~ 66 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAI-----------------------------------PYINFANL 66 (243)
T ss_dssp ------------------CCTTHHHHHTTCT--TCHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHH-----------------------------------HHHHHHHH
Confidence 4455555566666666666666666655331 2333 33344444
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 283 YAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
|.+.|++++|...|+++. ..+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 444444444444444433 1245556666666666777777777777766643 224566666777777777777777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
.+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++.+
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777653 2345666777777777777777777777766 222 346677777777888888888888888888888
Q ss_pred CCCCcchHhHHHHhh
Q 037713 438 PEDPSSYILLSNVYA 452 (610)
Q Consensus 438 p~~~~~~~~l~~~~~ 452 (610)
|+++..+..+..+..
T Consensus 224 p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 224 PDHMLALHAKKLLGH 238 (243)
T ss_dssp TTCHHHHHHHTC---
T ss_pred cchHHHHHHHHHHHh
Confidence 877766665555443
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=2.7e-12 Score=118.80 Aligned_cols=198 Identities=10% Similarity=0.002 Sum_probs=171.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456778888889999999999999988753 467889999999999999999999999998863 336788899999
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch
Q 037713 348 ACSHV-GLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNT 423 (610)
Q Consensus 348 a~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 423 (610)
.+... |++++|...++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987 234443 678899999999999999999999987 3334 478888999999999999
Q ss_pred hHHHHHHHHHhcCCC-CCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 424 EMGTRVANHLLSLKP-EDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88889999999999999999999999988653
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1.1e-11 Score=118.79 Aligned_cols=225 Identities=8% Similarity=-0.071 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFIS 276 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (610)
+..++..+...|...|++++|++.|++..+. .+...+..+...+.. .+++++|...++.+.+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4556666777777777888888888777762 344566666666766 777777777777777765 55666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 277 NAIVDMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 277 ~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777777 7777777777776653 356677777777777 777777777777777754 4555666666
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 037713 348 ACSH----VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAM-PFEPDEPTWAALLSACK 418 (610)
Q Consensus 348 a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 418 (610)
.+.. .+++++|...|+...+. .+...+..+..+|.+ .+++++|.+.|++. ... +...+..+...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6666 77777777777777653 245666667777777 77777777777766 222 2555666666666
Q ss_pred h----cCchhHHHHHHHHHhcCCCCC
Q 037713 419 H----HRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 419 ~----~g~~~~a~~~~~~~~~~~p~~ 440 (610)
. .+++++|...++++.+.+|++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 6 777777777777777776643
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=2.5e-12 Score=121.69 Aligned_cols=197 Identities=6% Similarity=-0.079 Sum_probs=171.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 45677788888899999999999988753 4678899999999999999999999999988643 3678888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 426 (610)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 23445 5678889999999999999999999987 3334 578888999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999987643
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.3e-11 Score=118.36 Aligned_cols=225 Identities=11% Similarity=-0.032 Sum_probs=196.4
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSI 310 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 310 (610)
-++..+..+...+...|++++|...++.+.+. .+...+..+...|.. .|++++|...|++..+ .+..++..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777888888899999999999999999983 456788889999999 9999999999998864 478889999
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 037713 311 IVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH----VGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382 (610)
Q Consensus 311 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 382 (610)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHH
Confidence 999999 999999999999999875 77888889999998 99999999999999874 3 567788889
Q ss_pred HHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh-
Q 037713 383 DLLSR----SGHLDEAENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS- 453 (610)
Q Consensus 383 ~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 453 (610)
..|.+ .+++++|.+.|++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|+.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 99988 99999999999987212356778888888999 9999999999999999877 5788999999999
Q ss_pred ---hcchhHHHHHHHHHhhCCC
Q 037713 454 ---AAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 454 ---~g~~~~a~~~~~~m~~~~~ 472 (610)
.+++++|.+.++...+.+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999876654
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=3e-12 Score=132.28 Aligned_cols=341 Identities=11% Similarity=0.005 Sum_probs=210.3
Q ss_pred HHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh---HHHHHHHHhcCCCChhhHHHHHHHHHhcC-----
Q 037713 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP---NNARAVFDSIKLKNSVSWTAMLSAYARSG----- 185 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g----- 185 (610)
.+.+.|++++|.+.+..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344555566666665555544 222233344444455555 56666665555445555555555444433
Q ss_pred CHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHH
Q 037713 186 RKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNEI---DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 261 (610)
+.++|...|++...+ +...+..|...|...+..+ ++++.+......|. +.....+...+...+.++.+....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY----PEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC----TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCcccCHHHH
Confidence 566677666665433 4456677777776665533 34455555544442 334445555555555433333332
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 037713 262 GLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQH----GQAEETLALYDEMV 331 (610)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~ 331 (610)
....+.....++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 22222222334448888999999999 89999999988764 3444446677777554 68999999999987
Q ss_pred HcCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhCCC
Q 037713 332 SAGVKPNEVTFVGLIYA-C--SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG-----HLDEAENLIKAMPF 403 (610)
Q Consensus 332 ~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~ 403 (610)
.| +...+..|... + ...+++++|.++|++..+. | +...+..|..+|. .| ++++|.+.|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 44555555555 3 5689999999999999874 4 6778888888887 55 9999999999997
Q ss_pred CCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh----hcchhHHHHHHHHHhhCCCc
Q 037713 404 EPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS----AAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 473 (610)
.-+...+..|...|.. ..++++|...|++..+.+ ++.+...|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5577777777777766 449999999999998754 46788899999975 45889999999988776653
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=9.7e-12 Score=126.48 Aligned_cols=302 Identities=11% Similarity=0.005 Sum_probs=176.7
Q ss_pred ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHH
Q 037713 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD----DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179 (610)
Q Consensus 104 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 179 (610)
....+......+...|++++|...++.+++.+ +.+ ..++..+...|...|++++|...|++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------- 72 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-------------- 72 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--------------
Confidence 34444555556666777777777777776653 223 24566677777777777777776643
Q ss_pred HHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhcccc
Q 037713 180 AYARSGRKKDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAV 253 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~ 253 (610)
|..+......+ ...+|..+...|...|++++|+..+++..+.....++ ..++..+...+...|+
T Consensus 73 ----------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 73 ----------DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp ----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 23333332211 2345666677777777777777777776543211011 3345555555666666
Q ss_pred --------------------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHH
Q 037713 254 --------------------LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSII 311 (610)
Q Consensus 254 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li 311 (610)
++.|...+....+. +.....+ ...++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la 194 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLG 194 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHH
Confidence 55555544443321 1111100 123455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHH
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLL 382 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li 382 (610)
..|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 666666666666666666543210 111 235666666777777777777777766542111111 45667777
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC------CCCcchHhHH
Q 037713 383 DLLSRSGHLDEAENLIKAM----PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKP------EDPSSYILLS 448 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~ 448 (610)
..|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 7888888888888877765 11122 45677777888899999999999998876532 2345667778
Q ss_pred HHhhhhcchh
Q 037713 449 NVYASAAMWQ 458 (610)
Q Consensus 449 ~~~~~~g~~~ 458 (610)
.+|...|+..
T Consensus 355 ~~~~~~g~~~ 364 (406)
T 3sf4_A 355 DLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhhHhH
Confidence 8887777653
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=9.1e-13 Score=123.79 Aligned_cols=196 Identities=9% Similarity=0.084 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
....+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455677788889999999999999998864 367889999999999999999999999998863 3367888899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a 426 (610)
+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456788999999999999999999999987 333 3677888899999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...++++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998764
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=1.3e-10 Score=124.37 Aligned_cols=420 Identities=8% Similarity=0.040 Sum_probs=290.3
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCC---chHHHHHHHHhHH
Q 037713 24 TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R-DHVSWASILTAYNQANL---PQKTISIFSTMLA 97 (610)
Q Consensus 24 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 97 (610)
..++..+... +.|...|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.++ .+.+..+|++.+.
T Consensus 53 ~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 53 GKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 3445555544 34788899999999999999999999998863 3 55668888888888888 9999999999987
Q ss_pred CCCCCCChhhHHHHHHHHhccCCc--------HHHHHHHHHHHh-cCC-CCC-hhHHHHHHHHHHh---------CCChH
Q 037713 98 LDKLQPDHFVFASLVKACGSLGAT--------RLGKQVHACFVL-SPF-CDD-DVVKSSLVDMYAK---------CGLPN 157 (610)
Q Consensus 98 ~~~~~pd~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~ 157 (610)
.....|+...|..-+....+.++. +...++|+.++. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 431138888877777665554443 334577877665 365 454 5678877776543 34577
Q ss_pred HHHHHHHhcCCC---C-hhhHH---HHHHHH----------HhcCCHHHHHHHHhh-------C----CC----------
Q 037713 158 NARAVFDSIKLK---N-SVSWT---AMLSAY----------ARSGRKKDAMEIFEQ-------A----PV---------- 199 (610)
Q Consensus 158 ~A~~~~~~m~~~---~-~~~~~---~li~~~----------~~~g~~~~A~~~~~~-------~----~~---------- 199 (610)
.+.++|++...- + ..+|. .+...+ -....++.|...+.+ + +.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 888999887742 1 12232 221111 011223344444432 1 11
Q ss_pred C--C------hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH-HHHHH
Q 037713 200 R--N------LFLWTALVSGLVQSR-------NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-QIHGL 263 (610)
Q Consensus 200 ~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~ 263 (610)
| + ...|...+.---..+ ..+.+..+|++.+.... -++..|...+.-+...|+.+.|. .+++.
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0 0 134555555444333 12345678888887642 57788888888888888888896 99999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hhHHHHHHHHHHhcC
Q 037713 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-------------KD------------VVSWTSIIVGTAQHG 318 (610)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g 318 (610)
++.. .+.+..++-.++...-+.|+++.|.++|+++.. |+ ...|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 9875 356777888899999999999999999998763 21 236888888888899
Q ss_pred ChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 319 QAEETLALYDEMVSA-GVKPNEVTFVGLIYACSH-VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
..+.|..+|.+..+. +. +....|......-.+ .++.+.|..+|+...+. .+.+...+...++.....|+.+.|..
T Consensus 449 ~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp CHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999876 21 123333332222223 35599999999999986 34456677888998889999999999
Q ss_pred HHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 397 LIKAM-PFEP----DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 397 ~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+|++. ...| ....|...+.--...|+.+.+..+.+++.+..|+++ ....+++=|
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99987 3333 356788888888999999999999999999999874 333344433
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=4.5e-13 Score=128.55 Aligned_cols=243 Identities=13% Similarity=0.028 Sum_probs=150.6
Q ss_pred CCCchHHHHHHHHhHHCCCCCC--ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQP--DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~p--d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 159 (610)
.|++++|+..|+++.+.....| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666665421111 33445555556666666666666666666554 34455555566666666666555
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHh
Q 037713 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239 (610)
Q Consensus 160 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 239 (610)
.+.|++... ....+...|..+...|.+.|++++|++.|+++.+.. |+..
T Consensus 97 ~~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~ 145 (275)
T 1xnf_A 97 YEAFDSVLE----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP 145 (275)
T ss_dssp HHHHHHHHH----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHh----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh
Confidence 555543321 012245666777777777777777777777777655 3333
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHH
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD-------VVSWTSIIV 312 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~ 312 (610)
.....+..+...|+++.|...+..+.... +++...+ .++..+...++.++|...+....+.+ ..+|..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 34444445566678888888887776654 2333333 36677777888888888888877532 467888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.|...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998875 3432 222344666778888887765
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2e-12 Score=131.64 Aligned_cols=266 Identities=13% Similarity=0.031 Sum_probs=197.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHh----CCCC-c
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIAL----GYES-C 272 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 272 (610)
...+......+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+..+.+. +..+ .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566677777788888888877777642 23 245666677777778888888777776543 2111 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQ--------------------AEET 323 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 323 (610)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888999998888887653 22 4478888888999999 9999
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 037713 324 LALYDEMVSA----GVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 324 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 394 (610)
+..+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876542 11121 356788889999999999999999988764222222 24788899999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchHhHHHHhhhhcchhHH
Q 037713 395 ENLIKAM----PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 395 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 460 (610)
...+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999876 11122 5577788888999999999999999998764432 45788999999999999999
Q ss_pred HHHHHHHhh
Q 037713 461 SKVRKLMSV 469 (610)
Q Consensus 461 ~~~~~~m~~ 469 (610)
.+.++...+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.7e-11 Score=117.40 Aligned_cols=234 Identities=8% Similarity=-0.001 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHh
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD--PLVLSSIVGACA 249 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~~~~ 249 (610)
......+.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+.+.. |+ ...+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHH
Confidence 344445555566666666665543 234557777777788888888888888887773311 11 234677777788
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLAL 326 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 326 (610)
..|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887764 34567888999999999999999999999875 3567787777344445699999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 037713 327 YDEMVSAGVKPNEVTFVGLIYACSHVGL---VGKGRKLFKSMIEDYGITPS------LQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 327 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
|++..+.. +.+...+..+..++...|+ .++|...++++.+...-.|+ ...|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99998863 2246777778888888888 88899999888775433344 26788899999999999999999
Q ss_pred HHhC-CCCCC-HHHHH
Q 037713 398 IKAM-PFEPD-EPTWA 411 (610)
Q Consensus 398 ~~~m-~~~p~-~~~~~ 411 (610)
+++. .+.|+ ...+.
T Consensus 244 ~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 244 WKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCccHHHHHH
Confidence 9988 44554 33343
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=8.4e-13 Score=134.90 Aligned_cols=262 Identities=11% Similarity=-0.011 Sum_probs=176.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH----hHHHHHHHHHhccccHHHHHHHHHHHHHh----C-CCCchhHH
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP----LVLSSIVGACANFAVLELGKQIHGLVIAL----G-YESCLFIS 276 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 276 (610)
..+...+...|++++|+..|+++.+... .+. ..+..+...+...|+++.|...++.+.+. + .+....++
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445556666777777777776666542 222 34556666666677777777766666543 1 12234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRRK---------DVVSWTSIIVGTAQHGQ-----------------AEETLALYDEM 330 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m 330 (610)
..+...|...|++++|...|++..+- ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777777778877777777765421 23467777777888888 78888877775
Q ss_pred HHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 331 VSA----GVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 331 ~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
.+. +-.| ...++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 442 1111 2346777778888888888888888877653211112 236778888888889988888888776
Q ss_pred -CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 402 -PF---EPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 402 -~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.. ..+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 111 4567777888888999999999999888654322 347778899999999999999988877
Q ss_pred hh
Q 037713 468 SV 469 (610)
Q Consensus 468 ~~ 469 (610)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=2.5e-12 Score=126.93 Aligned_cols=263 Identities=14% Similarity=0.041 Sum_probs=182.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-CchhH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIAL----GYE-SCLFI 275 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 275 (610)
+......+...|++++|+..|+++.+... .+ ...+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 33445556667777777777777766542 22 245556666677777777777776665443 211 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQ--------------------AEETLAL 326 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 326 (610)
+..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777788888888888887777642 22 3467777888888888 8888888
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 037713 327 YDEMVSA----GVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 327 ~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776432 1111 1346777788888899999999988887653211112 24778888889999999999988
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchHhHHHHhhhhcchhHHHHH
Q 037713 398 IKAM----PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 398 ~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
+++. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876 11122 4567777888999999999999999988664432 34777899999999999999999
Q ss_pred HHHHhh
Q 037713 464 RKLMSV 469 (610)
Q Consensus 464 ~~~m~~ 469 (610)
++...+
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=3.3e-12 Score=128.07 Aligned_cols=226 Identities=11% Similarity=0.089 Sum_probs=194.7
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD-IIAAKDIFGRMRR---KDVVSWTSIIV 312 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~ 312 (610)
+...+..+..++...|+++.|...++.+++.. +.+..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45667778888889999999999999999886 4568899999999999997 9999999999874 47889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCCH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHL 391 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 391 (610)
.+...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++++. -+-+...|+.+..+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987433 7889999999999999999999999999884 34467899999999999 6765
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc-------
Q 037713 392 DEA-----ENLIKAM-PFEP-DEPTWAALLSACKHHR--NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA------- 455 (610)
Q Consensus 392 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 455 (610)
++| ++.|++. .+.| +...|..+...+...| ++++|++.++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4677766 4455 4778888888888888 689999999998 899999999999999999875
Q ss_pred --chhHHHHHHHHH
Q 037713 456 --MWQHVSKVRKLM 467 (610)
Q Consensus 456 --~~~~a~~~~~~m 467 (610)
..++|.++++.+
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 358899999887
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=1.8e-11 Score=120.63 Aligned_cols=274 Identities=11% Similarity=0.000 Sum_probs=141.9
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDD----DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
...+...|++++|...++.+++.. +.+ ..++..+...|...|++++|.+.+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 344455566666666666666543 222 2455566666777777777766654332
Q ss_pred HHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhcccc--------
Q 037713 188 KDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAV-------- 253 (610)
Q Consensus 188 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~-------- 253 (610)
++......+ ...++..+...|...|++++|+..+++..+.....++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 222221111 1345566666777777777777777766543211022 2245555555666666
Q ss_pred ------------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCC
Q 037713 254 ------------LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQ 319 (610)
Q Consensus 254 ------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~ 319 (610)
++.|...+....+. +.....+ ...++..+...+...|+
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 55555555444322 0110000 12234444445555555
Q ss_pred hHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCC
Q 037713 320 AEETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGH 390 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~ 390 (610)
+++|...+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..++..+...|...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 5555555554432100 011 224555555666666666666666555432111111 3456666666777777
Q ss_pred HHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 391 LDEAENLIKAM-PF---EPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 391 ~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
+++|...+++. .. .++ ..++..+...+...|++++|...+++++++.+
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 77777666655 10 111 34566677777788888888888888777654
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.5e-11 Score=110.13 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+..|..+...|...|++++|++.|++..+.... +..++..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 445555555555556666666666555554221 3455555555566666666666666555542 2233445555555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
.+...+++++|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 566666666666665554 2222 34555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhh
Q 037713 462 KVRKLMSV 469 (610)
Q Consensus 462 ~~~~~m~~ 469 (610)
+.++...+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.6e-12 Score=133.72 Aligned_cols=193 Identities=8% Similarity=-0.023 Sum_probs=165.0
Q ss_pred CchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 271 SCLFISNAIVDMYAKCSDI-IAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4566777777777788888 888888877653 35778899999999999999999999998875 57778888899
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC---
Q 037713 347 YACSHV---------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS--------GHLDEAENLIKAM-PFEP--- 405 (610)
Q Consensus 347 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p--- 405 (610)
.++... |++++|.+.|++..+. .+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999999874 344578899999999988 9999999999988 4455
Q ss_pred -CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 406 -DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 406 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+..+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68889999999999999999999999999999999999999999999999999998755443
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=2.6e-11 Score=123.81 Aligned_cols=275 Identities=12% Similarity=-0.016 Sum_probs=155.5
Q ss_pred HHHHHhccCCcHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 111 LVKACGSLGATRLGKQVHACFVLSPFCDDD----VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
+...+...|++++|...++.+++.+ +.+. .++..+...|...|++++|...|++
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 111 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH--------------------- 111 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------
Confidence 3344555666666666666666553 2222 3455566666666666666666543
Q ss_pred HHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCCHhHHHHHHHHHhcccc-------
Q 037713 187 KKDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREG----VDIVDPLVLSSIVGACANFAV------- 253 (610)
Q Consensus 187 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p~~~t~~~ll~~~~~~~~------- 253 (610)
|.++....... ....|..+...|...|++++|+..|++..+.. -.+....++..+...+...|+
T Consensus 112 ---al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 112 ---DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 22232222211 23456667777777777777777777765431 111223455555666666666
Q ss_pred ----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChH
Q 037713 254 ----------LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAE 321 (610)
Q Consensus 254 ----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 321 (610)
++.|...+....+. +.....+ ...+|..+...|...|+++
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 55555554443321 1111110 1234555555566666666
Q ss_pred HHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHH
Q 037713 322 ETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP----SLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 322 ~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 392 (610)
+|+..|++..+... .++ ..++..+...+...|++++|...+++..+...-.. ...++..+...|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 66666655543210 011 22556666677777777777777766654311111 1456777777788888888
Q ss_pred HHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 393 EAENLIKAM-PF---EPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 393 ~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
+|.+.+++. .+ .++ ..++..+...+...|++++|...+++++++.+
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 888777765 11 111 34667777888889999999999999887765
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.3e-10 Score=113.70 Aligned_cols=219 Identities=10% Similarity=0.070 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh-------ccccH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACA-------NFAVL-------ELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 219 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
++|+.+|++..... |.++..|......+. ..|++ ++|..+++.+++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67778888887764 256666766666654 34664 888888888887423446678888999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRR--K-DVV-SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS-HVGLVGKGR 359 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~ 359 (610)
+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998764 3 343 899999999999999999999999987642 34445544433322 369999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-P---FEP--DEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988752 346788899999999999999999999887 2 355 3668888888888999999999999999
Q ss_pred hcCCCCCCc
Q 037713 434 LSLKPEDPS 442 (610)
Q Consensus 434 ~~~~p~~~~ 442 (610)
++..|+++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999997653
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=1.9e-11 Score=109.56 Aligned_cols=167 Identities=12% Similarity=0.038 Sum_probs=142.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 567888888999999999999999988763 46788999999999999999999999998876433 56777778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 426 (610)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998774 3456788899999999999999999999887 4444 577899999999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q 037713 427 TRVANHLLSLKPEDP 441 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~ 441 (610)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=3.4e-12 Score=124.69 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh------C
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRRE-------GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL------G 268 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 268 (610)
..+|..+...+...|++++|+.+|+++.+. ... .....+..+...+...|+++.|...+..+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 457788888888888898888888888763 111 34455566666666677777777666666543 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 037713 269 Y-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA------GVKP-NEV 340 (610)
Q Consensus 269 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ 340 (610)
- +....++..+...|...|++++|...|+ +..+. +-.| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHH
Confidence 1 1123344445555555555555555544 43332 1111 123
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CC
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDY-----GITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-P---------FE 404 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~ 404 (610)
.+..+...+...|++++|.++++.+.+.. +..| ....+..+...|.+.|++++|.+.++++ . ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34444555555555555555555544320 0011 1234555555555555555555555444 0 11
Q ss_pred CC-------HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 405 PD-------EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 405 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|. ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 11122222334445556666666766666667677777788888888888888887777654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=7e-11 Score=119.46 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC-CCCHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GI-TPSLQ 376 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~ 376 (610)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344444444445555555554444432100 011 1234444445555555555555554443310 11 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHhcCCCCCCcchHh
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PF-----EPD-EPTWAALLSACKHHRN---TEMGTRVANHLLSLKPEDPSSYIL 446 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 446 (610)
++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|+.++++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4444555555555555555555443 00 111 1112333333444444 44444444443 112222334445
Q ss_pred HHHHhhhhcchhHHHHHHHHH
Q 037713 447 LSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 447 l~~~~~~~g~~~~a~~~~~~m 467 (610)
++.+|...|++++|.+.++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555554
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=3.6e-09 Score=113.19 Aligned_cols=402 Identities=9% Similarity=-0.044 Sum_probs=276.7
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCC---cHHHHHHHHHHHhcC-CCCChhH
Q 037713 67 RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA---TRLGKQVHACFVLSP-FCDDDVV 142 (610)
Q Consensus 67 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 142 (610)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 48889999999999999999999999999985 34456667777777778888 999999999999864 2488888
Q ss_pred HHHHHHHHHhCCCh--------HHHHHHHHhcC------CC-ChhhHHHHHHHHH---------hcCCHHHHHHHHhhCC
Q 037713 143 KSSLVDMYAKCGLP--------NNARAVFDSIK------LK-NSVSWTAMLSAYA---------RSGRKKDAMEIFEQAP 198 (610)
Q Consensus 143 ~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~ 198 (610)
|...+....+.++. +...++|+... .+ +...|...+.-.. ..++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888776665554 33447777532 22 4567888776543 3456788999998876
Q ss_pred CC---Ch-hhH---HHHHHHH----------HhCCChHHHHHHHHHHHHc--CCC---C-----------C--C---H--
Q 037713 199 VR---NL-FLW---TALVSGL----------VQSRNEIDAFYSFIEMRRE--GVD---I-----------V--D---P-- 238 (610)
Q Consensus 199 ~~---~~-~~~---~~li~~~----------~~~g~~~~A~~~~~~m~~~--~~~---~-----------p--~---~-- 238 (610)
.- +. ..| ..+...+ -....++.|...+.++... ++. | | + .
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 32 11 233 2222221 0012234455555554321 111 0 1 1 0
Q ss_pred -hHHHHHHHHHhccc-------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CChhH
Q 037713 239 -LVLSSIVGACANFA-------VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK-DIFGRMRR---KDVVS 306 (610)
Q Consensus 239 -~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~ 306 (610)
..|...+.---..+ ..+....+|++++... +.+..+|-..+..+.+.|+.++|. ++|++... ++...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 12222222222211 2344567788887763 557788888888888999999996 99988763 35667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGV---------KPN------------EVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999999886410 142 235777778778889999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC---
Q 037713 366 IEDYGITPSLQHYTCLLDLLSRSG-HLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--- 439 (610)
Q Consensus 366 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--- 439 (610)
.+.. -.+....|...+.+-.+.| +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+|+++++..|+
T Consensus 461 ~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8741 1123345544444444554 589999999887 32335667778888888899999999999999988873
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
....+...+..-.+.|..+.+.++.+++.+.-.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334666777777888999999999999987544
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=4.1e-10 Score=110.04 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc-hh-HHHHHHHHHHhcCCHHHHHHH
Q 037713 219 IDAFYSFIEMRRE-GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LF-ISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 219 ~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~y~~~g~~~~A~~~ 295 (610)
++|..+|++..+. . |.+...|..++..+...|+++.|..+++.+++. .|+ .. +|..++..+.+.|++++|..+
T Consensus 81 ~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 6677777776662 3 134556666666667777777777777777663 232 32 677777777788888888888
Q ss_pred HHhcCCC---ChhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037713 296 FGRMRRK---DVVSWTSIIVGTA-QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 296 ~~~~~~~---~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 371 (610)
|++..+. +...|........ ..|+.++|..+|++..+... -+...|..++..+.+.|++++|..+|+...+...+
T Consensus 157 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8877542 3344443333222 26889999999988877532 25677888888888899999999999998874224
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 372 TP--SLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 372 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+| ....|..++..+.+.|+.++|..+++++
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 3578888888888899999999988887
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.1e-09 Score=110.42 Aligned_cols=226 Identities=8% Similarity=0.032 Sum_probs=119.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHhCC-----C-CchhHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIALGY-----E-SCLFISN 277 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 277 (610)
....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+..+.+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556777777777777777653211122 33455556666666666666666666554311 1 1133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGVKPNEVTFV 343 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 343 (610)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 566666666666666666655432 11 23455566666666666666666666554 21 11244555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGI---TPSLQHYTCLLDLLSRSGH---LDEAENLIKAMPFEPD-EPTWAALLSA 416 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 416 (610)
.+..++.+.|++++|..++++..+...- +.....+..+...|...|+ +++|...+++.+..|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5666666666666666666665543211 1112334444455555555 5555555555433222 2233344444
Q ss_pred HHhcCchhHHHHHHHHHh
Q 037713 417 CKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~ 434 (610)
|...|++++|...+++++
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=121.20 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=147.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc------C
Q 037713 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPV--------R---NLFLWTALVSGLVQSRNEIDAFYSFIEMRRE------G 232 (610)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 232 (610)
+..+|..+...|...|++++|...|+++.. . ...++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999988654 2 3467888999999999999999999998865 3
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL------GYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 305 (610)
-.+.....+..+...+...|+++.|...+..+.+. +.. ....++..+...|.+.|++++|...|++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a------ 179 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA------ 179 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Confidence 22245677888899999999999999999988765 211 12344555555555555555555555443
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCC
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSA------GVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY------GIT 372 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 372 (610)
.+. +..|+ ..++..+...+...|++++|..+++++.+.. ...
T Consensus 180 -------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 180 -------------------------LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -------------------------HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -------------------------HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 321 11111 2234444445555555555555554444310 001
Q ss_pred C-------CHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 373 P-------SLQHYTCLLDLLSRSGHLDEAENLIKAMP-FEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 373 ~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+ ....+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11222333334445556666666666652 233 3566788888899999999999999998877664
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=5.9e-11 Score=128.52 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
.+|+.|...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|++.|++..+. -+-+...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34444444444445555555555444443111 2344444555555555555555555544442 11223445555555
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..|+++++++|+++.++..|+.+|...|+|++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 55555555555555444 2233 244455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 037713 463 VRKLM 467 (610)
Q Consensus 463 ~~~~m 467 (610)
.+++.
T Consensus 167 ~~~ka 171 (723)
T 4gyw_A 167 RMKKL 171 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=7.7e-10 Score=111.74 Aligned_cols=164 Identities=9% Similarity=0.087 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSA----GV-KPNE 339 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~ 339 (610)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3556666777777777777777766542 11 246777888888899999999988887762 23 2335
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITPSLQHYTCLLDLLSRSGH---LDEAENLIKAMPFEPD-EPTWAA 412 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ 412 (610)
.++..+..++...|++++|...+++..+.. +-+.....+..+...|...|+ +++|..++++.+..|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 678888899999999999999998876532 112223346778888899999 8999999999865554 345667
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
+...|...|++++|...+++++++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7888999999999999999988643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=3.3e-09 Score=106.61 Aligned_cols=261 Identities=11% Similarity=-0.041 Sum_probs=174.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHh----HHHHHHHHHhccccHHHHHHHHHHHHHhCCC-Cc----hhHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL----VLSSIVGACANFAVLELGKQIHGLVIALGYE-SC----LFISNA 278 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 278 (610)
....+...|++++|...+++....... .+.. .+..+...+...|+++.|...+....+.... .+ ..+...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334556677777777777776664422 2222 3444555666777777777777776653111 11 233566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHH
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR----------K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--P--NEVTFV 343 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 343 (610)
+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 77778888888888888876642 1 1235666777888899999999999887764221 1 235677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT-----CLLDLLSRSGHLDEAENLIKAM-PFEPD-----EPTWAA 412 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ 412 (610)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 788888899999999999988865322211111222 2334577899999999999887 22222 234567
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCC-----C-CcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPE-----D-PSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+...+...|++++|...++++++..+. + ...+..++.+|...|++++|...++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888999999999999988754322 1 13667788899999999999998887654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=1.8e-10 Score=102.74 Aligned_cols=164 Identities=13% Similarity=0.015 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455666667777777777777776653 245566666666666666666666666666542 224555555566666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTR 428 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 428 (610)
..|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665552 2234445555555555555555555555544 111 234444445555555555555555
Q ss_pred HHHHHhcCCCCC
Q 037713 429 VANHLLSLKPED 440 (610)
Q Consensus 429 ~~~~~~~~~p~~ 440 (610)
.++++++..|++
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 555555544443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=4.5e-10 Score=100.05 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 3567778888999999999999999987653 336788889999999999999999999999874 3456788999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
.|...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987 22 3467788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 037713 462 KVRKLMSVM 470 (610)
Q Consensus 462 ~~~~~m~~~ 470 (610)
+.++...+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999887654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=3.7e-10 Score=104.89 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=153.4
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIV 312 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 312 (610)
.|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 577888888888999999999999999999887546777777788999999999999999988763 3 4677888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNE-------VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS---LQHYTCLL 382 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 382 (610)
.|...|++++|+..|++..+.... +. ..|..+...+...|++++|.+.|+.+.+ ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 999999999999999998875322 34 4577777888888999999999988865 3454 56777788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 383 DLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
..|...|+. .++++ .+ ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777666543 22222 11 12333443333 34456789999999999999999877666665543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=9.4e-10 Score=102.15 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=104.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|+..|++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445555666666666666666666665542 45555555666666666666666666666654211 3445556666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSL-------QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD---EPTWAALLSA 416 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~ 416 (610)
++...|++++|...++...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 6666666666666666665531 2222 34555555666666666666666655 44454 2334444444
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.. .+...++++..+.+.++..|.. ......+.+++|...++...+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 432 3334445555555444333322 2233445568888888877653
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=5.2e-10 Score=116.23 Aligned_cols=207 Identities=10% Similarity=-0.071 Sum_probs=147.7
Q ss_pred cHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh-HHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP-NNARAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 121 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 33455555555555555665 66665555543 12345566666666666666666666665
Q ss_pred CC--CCChhhHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc--------ccHHHH
Q 037713 197 AP--VRNLFLWTALVSGLVQS---------RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF--------AVLELG 257 (610)
Q Consensus 197 ~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~--------~~~~~a 257 (610)
.. .|+...|..+...|... |++++|++.|++..+.. |.+...+..+..++... |++++|
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 43 34456777777778887 88899999999888876 25788888888888888 899999
Q ss_pred HHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037713 258 KQIHGLVIALGYE--SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEM 330 (610)
Q Consensus 258 ~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (610)
...++.+.+.... .+...+..+..+|.+.|++++|.+.|++..+ .+...|..+...+...|++++|++.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999887421 4788899999999999999999999998763 35678889999999999999999877654
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=3.4e-08 Score=99.11 Aligned_cols=267 Identities=10% Similarity=-0.033 Sum_probs=150.8
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHCCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHHhcCC-CCC----hhHHHH
Q 037713 75 ILTAYNQANLPQKTISIFSTMLALDKLQPDHF----VFASLVKACGSLGATRLGKQVHACFVLSPF-CDD----DVVKSS 145 (610)
Q Consensus 75 li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ 145 (610)
....+...|++++|...+++..... ...+.. .+..+...+...|+++.|...+.+.++..- ..+ ..+++.
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3345567888888888888877643 111221 344455566777888888888887765321 111 123455
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDA 221 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 221 (610)
+...|...|++++|...++ ++.++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQE------------------------KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 6667777788877777764 333444433322 123455666777788888888
Q ss_pred HHHHHHHHHcCCC--CC-CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHH
Q 037713 222 FYSFIEMRREGVD--IV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL-FISN-----AIVDMYAKCSDIIAA 292 (610)
Q Consensus 222 ~~~~~~m~~~~~~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~y~~~g~~~~A 292 (610)
...+++....... ++ ...++..+...+...|+++.|...++......-.++. ..+. ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 8888877654321 01 1234555666667777777777777776654211111 1111 233446677777777
Q ss_pred HHHHHhcCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 037713 293 KDIFGRMRRKD-------VVSWTSIIVGTAQHGQAEETLALYDEMVSA----GVKPNE-VTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 293 ~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 360 (610)
...+++...++ ...+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|..
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 77777765432 113445556666667777766666665432 111111 133334444555555555555
Q ss_pred HHHHhH
Q 037713 361 LFKSMI 366 (610)
Q Consensus 361 ~~~~~~ 366 (610)
.++...
T Consensus 315 ~l~~al 320 (373)
T 1hz4_A 315 VLLDAL 320 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.7e-08 Score=101.55 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=149.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----CHhHHHHHH
Q 037713 180 AYARSGRKKDAMEIFEQAPV-----R----NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-----DPLVLSSIV 245 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~t~~~ll 245 (610)
.+...|++++|...|++... + ...++..+...|...|++++|+..+.+..+.....+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34555666666666554321 1 124666777777788888888877777665311101 234566777
Q ss_pred HHHhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C---ChhHHHHHHH
Q 037713 246 GACANFAVLELGKQIHGLVIAL----GYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----K---DVVSWTSIIV 312 (610)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~---~~~~~~~li~ 312 (610)
.++...|+++.|...+..+.+. +.+ ....++..+...|...|++++|...|++..+ . ...++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888777664 111 1235677788889999999999888887754 2 2456778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGV---KPN-EVTFVGLIYACSHVGL---VGKGRKLFKSMIEDYGITPS-LQHYTCLLDL 384 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 384 (610)
.|.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|..+++.. +..|+ ...+..+...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHH
Confidence 99999999999999999876421 122 3455666667777888 77777777663 33333 3567788999
Q ss_pred HHhcCCHHHHHHHHHhC
Q 037713 385 LSRSGHLDEAENLIKAM 401 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m 401 (610)
|.+.|++++|.+.|++.
T Consensus 346 y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999988764
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=6.2e-10 Score=106.64 Aligned_cols=165 Identities=15% Similarity=0.184 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSA------GVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-----GIT 372 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~ 372 (610)
.+|..+...|...|++++|+..|++.... .-.| ...++..+...+...|++++|..+++++.+.. +..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555554432 1111 23455556666666666666666666665420 011
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhcCc------hhHHHHHHHHHh
Q 037713 373 P-SLQHYTCLLDLLSRSGHLDEAENLIKAM-P---------FEPD-EPTWAALLSACKHHRN------TEMGTRVANHLL 434 (610)
Q Consensus 373 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~ 434 (610)
| ....+..+...|.+.|++++|.+.+++. . ..|. ...|..+.......+. +..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 2355666666666677777766666554 1 1222 2222222222222222 222222222222
Q ss_pred cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 435 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|..+.++..++.+|...|++++|.+.++...+
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344455677788888888888888887776543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=1.5e-09 Score=117.58 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=132.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+.... +...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456778888888888888888888887753 35778888888899999999999999988875322 4778888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 425 (610)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999888773 2335688889999999999999999999887 55564 6778888888999999999
Q ss_pred HHHHHHHHhcCC
Q 037713 426 GTRVANHLLSLK 437 (610)
Q Consensus 426 a~~~~~~~~~~~ 437 (610)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999998887654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=3.3e-09 Score=102.66 Aligned_cols=200 Identities=11% Similarity=-0.003 Sum_probs=136.0
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEET 323 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 323 (610)
+++.|...+..+ ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 3456677777777777766542 11 45778888888888888888
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 037713 324 LALYDEMVSAGV---KPN--EVTFVGLIYACSHV-GLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 324 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 393 (610)
+..|++..+... .+. ..++..+..+|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887765211 111 35778888889886 9999999999988764211111 3568888999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc-----hHhHHHHhh--hhcch
Q 037713 394 AENLIKAM-PFEPD---E-----PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS-----YILLSNVYA--SAAMW 457 (610)
Q Consensus 394 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 457 (610)
|...|++. ...|+ . ..|..+..++...|++++|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 22332 1 156777778889999999999999999999875543 334555554 45667
Q ss_pred hHHHHHHHHH
Q 037713 458 QHVSKVRKLM 467 (610)
Q Consensus 458 ~~a~~~~~~m 467 (610)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 7777766544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=3.9e-09 Score=100.99 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=136.5
Q ss_pred HhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHH
Q 037713 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFI 226 (610)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 226 (610)
...|++++|...|+ +|.+++.+...+ ...+|..+...|...|++++|+..|+
T Consensus 12 ~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (283)
T 3edt_B 12 SGLVPRGSAVPLCK------------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67 (283)
T ss_dssp -CCSCSSSHHHHHH------------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45677777777764 455555544322 23566677777777777777777777
Q ss_pred HHHHc------CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 227 EMRRE------GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL------G-YESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 227 ~m~~~------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
+..+. +-.|....++..+...+...|+++.|...+..+.+. . .+....++..+...|...|++++|.
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 76654 222134556677777777778888887777777665 1 1234566777888888888888888
Q ss_pred HHHHhcCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHhccCC
Q 037713 294 DIFGRMRRK-----------DVVSWTSIIVGTAQHGQAEETLALYDEMVSA-------GVKPNE-VTFVGLIYACSHVGL 354 (610)
Q Consensus 294 ~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~-~t~~~ll~a~~~~g~ 354 (610)
..|++..+. ...++..+...|...|++++|...|++..+. ...|.. ..+..+.......+.
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 887766431 2456777888888888888888888887653 112221 222222222222222
Q ss_pred ------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 355 ------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 355 ------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+.++...+..... ..+.....+..+...|.+.|++++|..++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp CCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333332211 11223467888899999999999999988764
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=3.1e-08 Score=93.92 Aligned_cols=205 Identities=9% Similarity=0.017 Sum_probs=124.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-D---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPN-EVTFV 343 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 343 (610)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555556666666666666666666653 2 2 44556666666666666666666666665421 111 33444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037713 344 GLIYACSH--------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415 (610)
Q Consensus 344 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 415 (610)
.+..++.. .|++++|...|+.+.+.+.- +......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 66666666666666654211 111111111111000000 111356677
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCC---cchHhHHHHhhhh----------cchhHHHHHHHHHhhCCCccCCcccEEE
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDP---SSYILLSNVYASA----------AMWQHVSKVRKLMSVMEVKKEPGYSYIE 482 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 482 (610)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++.+.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 79999999999999999999999854 4788899999877 899999999998865322
Q ss_pred ECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHH
Q 037713 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516 (610)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 516 (610)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 344455666666666665543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=1e-08 Score=99.09 Aligned_cols=167 Identities=7% Similarity=-0.044 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVK-PN---- 338 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~---- 338 (610)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555666666666666666666655542 11 34677788888886 9999999998887653111 01
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL-----QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEP---- 408 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---- 408 (610)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3567888889999999999999999887742111221 25677888888999999999999887 5555422
Q ss_pred --HHHHHHHHHH--hcCchhHHHHHHHHHhcCCCCC
Q 037713 409 --TWAALLSACK--HHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 409 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+..++.++. ..+++++|...|+++..++|..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 3444555554 4567888888888888887754
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.2e-08 Score=96.71 Aligned_cols=203 Identities=10% Similarity=0.070 Sum_probs=147.0
Q ss_pred CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----Chh
Q 037713 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAKDIFGRMRR--K----DVV 305 (610)
Q Consensus 235 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~ 305 (610)
+.+...+......+.+.|+++.|...++.+++... .+ ...+..+..+|.+.|++++|...|++..+ | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 36778888888899999999999999999988752 23 66788899999999999999999999864 3 145
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 037713 306 SWTSIIVGTAQ--------HGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376 (610)
Q Consensus 306 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 376 (610)
++..+..++.. .|++++|+..|++..+.. |+. ... .+...+...... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~--------------~a~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVD--------------DATQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHH--------------HHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHH--------------HHHHHHHHHHHH-----HHH
Confidence 67778888888 999999999999998863 432 111 111111111111 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CchhHHHHHHHHHhcCCCCCC
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHH----------RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+..+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3566778888999999999988887 22333 34566677777755 889999999999999999875
Q ss_pred c---chHhHHHHhhhhcchhH
Q 037713 442 S---SYILLSNVYASAAMWQH 459 (610)
Q Consensus 442 ~---~~~~l~~~~~~~g~~~~ 459 (610)
. +...+..++...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 3 34455555555555443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=8.9e-08 Score=91.09 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRR-----KDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444555555555555555554421 1233444445555555555555555555544
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=1.2e-07 Score=90.27 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037713 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 221 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 299 (610)
|+..|++....+ . ++..++..+..++...|++++|.+++...+..+- ..+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-Q-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555544433 1 4444444555555556666666666555544332 124445555556666666666666666555
Q ss_pred C
Q 037713 300 R 300 (610)
Q Consensus 300 ~ 300 (610)
.
T Consensus 163 ~ 163 (310)
T 3mv2_B 163 T 163 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.4e-08 Score=83.29 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
+|..+...+...|++++|..+|+++.+... .+..++..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 345555556666666666666666655421 24445555555555666666666666655542 122344445555555
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 386 SRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
.+.|++++|.+.++++ ... .+...+..+...+...|++++|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555444 111 2344444455555555555555555555554444
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=5.8e-07 Score=93.23 Aligned_cols=368 Identities=10% Similarity=0.004 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCC-chHHHHHHHHh
Q 037713 19 ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANL-PQKTISIFSTM 95 (610)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 95 (610)
+..++.+++..+..- |. |+++.|+.+|++.. .|++..|..-+....+.+. .+....+|+..
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666777777776542 22 88999999998765 3788888888877766653 35567788877
Q ss_pred HHCCCCCC-ChhhHHHHHHHHh----ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 037713 96 LALDKLQP-DHFVFASLVKACG----SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170 (610)
Q Consensus 96 ~~~~~~~p-d~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 170 (610)
...-+..| +...|...+..+. ..++.+.+..+|+.+++.+...-...|......-. ......+.++..+..
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~--- 150 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTL--- 150 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHH---
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHh---
Confidence 76411333 4455555555433 23567788889998887432211222332222111 111222222222110
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCCHh
Q 037713 171 SVSWTAMLSAYARSGRKKDAMEIFEQAP----VRNLFLWTALVSGLVQSRN-------EIDAFYSFIEMRREGVDIVDPL 239 (610)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~p~~~ 239 (610)
+.+..|..+++.+. ..+...|...+.--..++. .+.+..+|+++..... .++.
T Consensus 151 --------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p--~~~~ 214 (493)
T 2uy1_A 151 --------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY--YAEE 214 (493)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHH
T ss_pred --------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC--CCHH
Confidence 11222222222111 1234456555554332211 3456778888887652 5577
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------CCChhH
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA-KDIFGRMR------------RKDVVS 306 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~------------~~~~~~ 306 (610)
.|...+.-+.+.|+.+.|+.+++.++.. +.+...+.. |+...+.++. ..+.+... ......
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 7777777778888999999999999888 444444432 2222111111 11111110 011245
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
|...+....+.+..+.|..+|++. .. ..++...|......-.. .++.+.|..+|+...+.++ .++..+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 666666666677788888888887 32 12234444322211111 2358888888888877543 2344566677777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
.+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77888888888888872 246667777766667777777777776665
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=4.8e-08 Score=90.37 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR--KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNE-VTFVGL 345 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~~l 345 (610)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.... |.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444556667777777777777777653 32 245666677777777777777777777664322 111 133333
Q ss_pred HHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 037713 346 IYACSH------------------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407 (610)
Q Consensus 346 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 407 (610)
..++.. .|+.++|...|+.+.+.+. -+...+.....+. ...... .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHHH----HHHHHH-----------H
Confidence 333332 3444555555555444211 1111111110000 000000 0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC---cchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP---SSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.....+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112345568889999999999999999999875 56889999999999999999999988776543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=1.8e-08 Score=84.07 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=112.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACK 418 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 418 (610)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788899999999999999999874 3446788889999999999999999999988 22 335778888889999
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..|++++|...++++++..|.++..+..++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999998899999999999999999999999987653
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=1.1e-09 Score=94.29 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=100.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 391 (610)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344456667777776665432 222 334556667777777777777777777663 233567778888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH-HHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 392 DEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTR-VANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
++|...|++. .+.| +...|..+...+...|+.++|.+ .++++++++|+++.+|.....++.+.|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4455 46778888888888998876655 4689999999999999888888887774
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=9.1e-09 Score=111.85 Aligned_cols=169 Identities=11% Similarity=0.001 Sum_probs=123.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 284 AKCSDIIAAKDIFGRMR-----------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 56777888888777765 23566777777888888888888888888776532 2566777777788888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
|++++|...|++..+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887763 23345777778888888888888 7777776 3344 4667777777888888888888888
Q ss_pred HHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 431 NHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 431 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+++++++|++..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888877788888888766554
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=6.3e-08 Score=93.27 Aligned_cols=175 Identities=7% Similarity=-0.026 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
.+...+.+......+...+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 344445555555455666777888888899999999999998876322 5677888888999999999999999888653
Q ss_pred cCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC--Ccc
Q 037713 369 YGITPSLQHYTCL-LDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED--PSS 443 (610)
Q Consensus 369 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 443 (610)
.|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4554333222 23366777888888888776 3344 57788888899999999999999999999999987 778
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHH
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+..|+.+|...|+.++|...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999988877654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.5e-07 Score=102.21 Aligned_cols=190 Identities=11% Similarity=0.030 Sum_probs=146.0
Q ss_pred hccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 037713 249 ANFAVLELGKQIHGLVI--------ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQH 317 (610)
Q Consensus 249 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 317 (610)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 32 244567888889999999999999999998874 4778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
|++++|++.|++..+.... +...+..+..++...|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999886322 56778889999999999999 9999998874 344568899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCc-----hhHHHHHHHHHhcCCCCCCcc
Q 037713 398 IKAM-PFEPD-EPTWAALLSACKHHRN-----TEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 398 ~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 443 (610)
|++. ...|+ ...|..+..++...++ .+...+..+.+.++.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 67776 4567677777666554 233444444444555554443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.8e-07 Score=84.26 Aligned_cols=172 Identities=9% Similarity=-0.020 Sum_probs=125.3
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 037713 292 AKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG----LVGKGRKLFKSMI 366 (610)
Q Consensus 292 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 366 (610)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 366677777777777788888888888877764 45666666666766 5 7888888888876
Q ss_pred HhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCchhHHHHHHHHHh
Q 037713 367 EDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAM-PFEPD---EPTWAALLSACKH----HRNTEMGTRVANHLL 434 (610)
Q Consensus 367 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 434 (610)
+. .+...+..|..+|.. .+++++|.+.|++. ...|+ ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 356677777777776 77888888888877 44443 6777778777777 778999999999988
Q ss_pred cCCCCCCcchHhHHHHhhhh-c-----chhHHHHHHHHHhhCCC
Q 037713 435 SLKPEDPSSYILLSNVYASA-A-----MWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 435 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 472 (610)
+. |.++.++..|+.+|... | ++++|.+.++...+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 55667888888888764 3 78899998888776654
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.1e-07 Score=86.66 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=96.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 389 (610)
+...|.+.|++++|+..|++..+.... +...+..+..++...|++++|...|++..+. -+.+...|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 888889999999999999998886322 6778888999999999999999999999874 3445678888888886665
Q ss_pred C--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 390 H--LDEAENLIKAMPFEPDE--PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 390 ~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
. .+.+...++... .|+. ..+..+..++...|++++|+..|++++++.|++
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 4 445566666652 3443 344455556777899999999999999999963
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=3e-07 Score=89.44 Aligned_cols=220 Identities=9% Similarity=0.009 Sum_probs=154.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
..|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35778889998888776431 11 011146677776666543 45677888988888
Q ss_pred HHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCCHHHHH
Q 037713 294 DIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VKPN--EVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 294 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 359 (610)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88877653 12 4578888899999999999999999876531 1122 3577888888988 9999999
Q ss_pred HHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHH
Q 037713 360 KLFKSMIEDYGITP----SLQHYTCLLDLLSRSGHLDEAENLIKAM-PF---EPD----EPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 360 ~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~ 427 (610)
..|++..+.+.-.. ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998876421111 1467888999999999999999999887 11 122 235666666778889999999
Q ss_pred HHHHHHhcCCCCCCcc-----hHhHHHHhhhhcchhHHHH
Q 037713 428 RVANHLLSLKPEDPSS-----YILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 462 (610)
..+++.+ ++|....+ ...++..| ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 98875433 22344444 4566555544
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.4e-07 Score=100.57 Aligned_cols=160 Identities=12% Similarity=0.036 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 286 CSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+... -+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677888888887764 3567888888899999999999999999887632 25778888889999999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CchhHHHHHHHHHhcCC
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHH---RNTEMGTRVANHLLSLK 437 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 437 (610)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998874 3445788889999999999999999999887 3344 467788888889999 99999999999999999
Q ss_pred CCCCcchHhHH
Q 037713 438 PEDPSSYILLS 448 (610)
Q Consensus 438 p~~~~~~~~l~ 448 (610)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888777666
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=6.4e-06 Score=79.05 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=155.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA--VLELGKQIHGLVIALGYESCLFISNAIVDMY----AKC--- 286 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~--- 286 (610)
...++|++++..++..+. -+...++.--.+....+ .++++...++.+.... +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334678888888877662 35555666666666666 7777777777777764 33444555444444 444
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------H
Q 037713 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAE--ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL------V 355 (610)
Q Consensus 287 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 355 (610)
+++++++.+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888763 57778888777777888877 888888888887554 66777766666666665 7
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCchhHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE-AENLIKAM-PF----EPDEPTWAALLSACKHHRNTEMGTRV 429 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (610)
+++++.+..++.. -+-|...|+.+-..+.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7888888887763 34567778777777877777444 44566655 21 23567777787888888888888888
Q ss_pred HHHHhc-CCCCCCcchHhHH
Q 037713 430 ANHLLS-LKPEDPSSYILLS 448 (610)
Q Consensus 430 ~~~~~~-~~p~~~~~~~~l~ 448 (610)
++.+.+ .+|.....+...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 888875 6887655554433
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=9.7e-08 Score=101.74 Aligned_cols=152 Identities=14% Similarity=0.016 Sum_probs=117.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
.|++++|++.|++..+... -+...+..+...+...|++++|.+.+++..+. .+.+...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788999999999887532 25788899999999999999999999999763 34457899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh---cchhHHHHHHHHHhhCC
Q 037713 397 LIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA---AMWQHVSKVRKLMSVME 471 (610)
Q Consensus 397 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~ 471 (610)
.+++. ...| +...|..+...+...|++++|.+.++++++.+|+++..+..++.+|... |++++|.+.++...+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99987 4444 5778899999999999999999999999999999999999999999999 99999999888775543
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=1.1e-06 Score=80.04 Aligned_cols=145 Identities=11% Similarity=-0.037 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456667777788888888777777777777777777777777777777777776653 22456666677777777777
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD-EPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
++|...|+...+...-.+... +...| +...|+ ...+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665211111000 00000 012222 3456666666777777777777777777
Q ss_pred cCCCCC
Q 037713 435 SLKPED 440 (610)
Q Consensus 435 ~~~p~~ 440 (610)
+..|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 777754
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=1.1e-07 Score=83.96 Aligned_cols=155 Identities=6% Similarity=-0.057 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~---- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHH----
Confidence 33445556666666666666666553 24555666666666666666666666655443 2222211111000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
. +...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 01111112234444443 2234 3566677777777777778888888
Q ss_pred HHHhcCCCCC--CcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 431 NHLLSLKPED--PSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 431 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+++++.+|+. +..+..++.+|...|+.++|...++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 7777777753 446777777888888887777776654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=2.6e-07 Score=81.61 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHH-HHh
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVG-TAQ 316 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~ 316 (610)
.+......+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566777889999999999999887754 44678899999999999999999999999875 333333222111 112
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
.+...+|+..|++..+. .| +...+..+..++...|++++|...|+.+.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233456666666554 22 3555556666666666666666666665542111112345555555666666666555
Q ss_pred HHHH
Q 037713 396 NLIK 399 (610)
Q Consensus 396 ~~~~ 399 (610)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=3.9e-07 Score=84.12 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=133.1
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYES--CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-V---VSWT 308 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 308 (610)
++..+......+...|+++.|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667778889999999999999999874322 235778889999999999999999999863 32 2 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 309 SIIVGTAQ------------------HGQAEETLALYDEMVSAGVKPNEV-TFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 309 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
.+..++.. .|+.++|+..|++..+. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999876 44432 22111 111111110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|++...
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112245677889999999999999987 33444 2467788889999999999999999999988876543
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.66 E-value=1e-06 Score=80.18 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=111.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH-hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP-LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
.....+...|++++|+..|++..+.. |+. ..+... . ... .........+.+...|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~-~-~~~-----------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWT-N-VDK-----------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHH-H-SCT-----------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHh-h-hcc-----------------hhhhhHHHHHHHHHHHHH
Confidence 34456677888888888888887765 332 222210 0 000 000112233457777788
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHH
Q 037713 286 CSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL--VGKGRK 360 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~ 360 (610)
.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+... -+..++..+..++...|. .+.+..
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888888888877653 3567788888888888888888888888877532 246677777776655543 333444
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLS 415 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 415 (610)
.+.... ...|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444432 22222233444555666778888888888876 67777665554443
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=1.7e-06 Score=83.17 Aligned_cols=163 Identities=8% Similarity=-0.018 Sum_probs=102.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHH-HHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTS-IIV 312 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~ 312 (610)
.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+...... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 444445555555666666666666666666553 33556677777778888888888888887764 44332222 222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
.+...++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556667777777777777653 225666777777777777777777777777764211122566777777777777777
Q ss_pred HHHHHHHh
Q 037713 393 EAENLIKA 400 (610)
Q Consensus 393 ~A~~~~~~ 400 (610)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 76666553
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=1.6e-08 Score=86.96 Aligned_cols=121 Identities=11% Similarity=0.008 Sum_probs=99.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHR 421 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 421 (610)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|.+.|++. .+.| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455667889999998887743 3343 345667899999999999999999988 5555 5788999999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH-HHHHh
Q 037713 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV-RKLMS 468 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 468 (610)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 45554
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=5.8e-06 Score=79.38 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=170.9
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----Hhc---CCh
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS--DIIAAKDIFGRMRR---KDVVSWTSIIVGT----AQH---GQA 320 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 320 (610)
..++|....+.++..+ +.+..+|+.--..+...| ++++++++++.+.. ++..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888875 446678888888888888 99999999999874 4667787766665 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 037713 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG--KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH------LD 392 (610)
Q Consensus 321 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 392 (610)
++++++++++.+...+ |...|..-.-.+.+.|.++ ++.++++.+.+. -+-|...|+.-..++.+.|. ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 9999999999987544 7888887777778888888 999999999985 34566778777777777776 89
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch-hHHHHHHHHHhcCC---CCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 393 EAENLIKAM-PFEP-DEPTWAALLSACKHHRNT-EMGTRVANHLLSLK---PEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 393 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
++++.++++ ...| |...|+.+...+.+.|+. +....+++++.+++ |.++.+...++++|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999998877 3344 688899888888888874 44666888887766 77888899999999999999999999999
Q ss_pred Hhh
Q 037713 467 MSV 469 (610)
Q Consensus 467 m~~ 469 (610)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=3.7e-07 Score=75.53 Aligned_cols=109 Identities=8% Similarity=-0.010 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 44556667777777777777777777663 3345677777777777888888888777776 3334 466777788888
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
...|++++|++.|+++++++|+++.++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888887776666554
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=1.9e-06 Score=78.55 Aligned_cols=172 Identities=9% Similarity=-0.067 Sum_probs=107.0
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCC----ChHHHHHH
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG----LPNNARAV 162 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 162 (610)
+|++.|++..+.| +...+..+-..+...+++++|...++...+.| +...+..|..+|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 55566666666666677777777777776654 44555666666666 5 66777777
Q ss_pred HHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHH
Q 037713 163 FDSIKLK-NSVSWTAMLSAYAR----SGRKKDAMEIFEQAPVRN-----LFLWTALVSGLVQ----SRNEIDAFYSFIEM 228 (610)
Q Consensus 163 ~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m 228 (610)
|++..++ +..++..|...|.. .+++++|...|++....+ +.++..|...|.. .+++++|+.+|++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 6665433 55566666666655 667777777777655442 4666677777776 66777777777777
Q ss_pred HHcCCCCCCHhHHHHHHHHHhcc-c-----cHHHHHHHHHHHHHhCC
Q 037713 229 RREGVDIVDPLVLSSIVGACANF-A-----VLELGKQIHGLVIALGY 269 (610)
Q Consensus 229 ~~~~~~~p~~~t~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 269 (610)
.+.+ .++..+..+...+... | +.++|...++...+.|.
T Consensus 156 ~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6652 2333444454454432 2 67777777777766653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=3.5e-06 Score=81.23 Aligned_cols=159 Identities=8% Similarity=-0.054 Sum_probs=113.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAG-VKPNEV----TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTC 380 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 380 (610)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+...-.++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122321 2334666677778888888888888763222223 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CC--C-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchH
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-----PF--E-PD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYI 445 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-----~~--~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 445 (610)
+...|...|++++|...|+++ .. . |. ..++..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888889988888888776 11 1 11 3467788888999999999999999988654322 45788
Q ss_pred hHHHHhhhhcc-hhHHHHHHHHHh
Q 037713 446 LLSNVYASAAM-WQHVSKVRKLMS 468 (610)
Q Consensus 446 ~l~~~~~~~g~-~~~a~~~~~~m~ 468 (610)
.++.+|.+.|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 688988877654
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=2.2e-07 Score=79.54 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=84.5
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 371 ITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 371 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 466777888888899999999998887 4445 577888888889999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|.+.++...+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999888654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=1.2e-06 Score=79.76 Aligned_cols=126 Identities=9% Similarity=0.018 Sum_probs=93.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKH 419 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 419 (610)
+..+...+...|++++|...|++. +.|+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334455566666777776666654 2445666777777777777777777777665 2223 46677777888888
Q ss_pred cCchhHHHHHHHHHhcCCCCCC----------------cchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 420 HRNTEMGTRVANHLLSLKPEDP----------------SSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
.|++++|+..++++++..|.+. ..+..++.+|...|++++|.+.++...+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888888887766 7899999999999999999999999876543
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=1.3e-07 Score=80.88 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456677778888888888888888877 3334 5777888888888889999999999999988998888888999999
Q ss_pred hhhcchhHHHHHHHHHhh
Q 037713 452 ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~ 469 (610)
...|++++|.+.++...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999888887754
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=6.3e-07 Score=73.30 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|...++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666666677777777777666653 2334566667777777777777777777766 22 2356677778888
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+...|++++|...++++++.+|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888777777777765543
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=8.6e-07 Score=76.95 Aligned_cols=127 Identities=8% Similarity=-0.046 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666677777777777766653 2334666777777777777777777777766 2233 466777788888
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHH--HhhhhcchhHHHHHHHHHh
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSN--VYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 468 (610)
...|++++|...++++++.+|.++..+..+.. .+...|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999999999999888888777744444 4778899999988887654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=2.3e-07 Score=88.94 Aligned_cols=189 Identities=8% Similarity=-0.062 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455556666666666666666665542 256666777777777777777777777766542 12456666677777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGIT---PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 426 (610)
...|++++|...|+...+...-. .....+..+ ...+...+.. .......++......+ ..+. .|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 77777777777777665431100 011111111 1112211211 1222223333333333 3332 6888999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhh-cchhHHHHHHHHHhhC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASA-AMWQHVSKVRKLMSVM 470 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 470 (610)
.+.++++++++|++......+...+.+. +++++|.+++....+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998776666777777766 7788999998887653
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.2e-06 Score=84.59 Aligned_cols=163 Identities=8% Similarity=-0.075 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--H
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-----VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI--TPS--L 375 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~--~ 375 (610)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777788888888888777664322111 22334555667778888888888877652111 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC------C
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD-----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE------D 440 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 440 (610)
.+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888888888888888888888765 11222 257788888899999999999999988765422 1
Q ss_pred CcchHhHHHHhhhhcchhHH-HHHHHHH
Q 037713 441 PSSYILLSNVYASAAMWQHV-SKVRKLM 467 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m 467 (610)
..+|..++.+|.+.|++++| ...++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 45678899999999999999 6656654
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=5.5e-06 Score=85.90 Aligned_cols=372 Identities=8% Similarity=-0.066 Sum_probs=209.8
Q ss_pred cCC-ChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCC-cHHHHHH
Q 037713 50 KCD-LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQV 127 (610)
Q Consensus 50 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~-~~~a~~~ 127 (610)
+.| +++.|+.+|+... ..+-. |+++.+..+|++.+. ..|+...|..-++...+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 345 3667777776543 22211 889999999998887 45788888887777666553 4556777
Q ss_pred HHHHHhc-CCC-CChhHHHHHHHHHHh----CCChHHHHHHHHhcCCCChhhHHHHHHHHHh---cCCHHHHHHHHhhCC
Q 037713 128 HACFVLS-PFC-DDDVVKSSLVDMYAK----CGLPNNARAVFDSIKLKNSVSWTAMLSAYAR---SGRKKDAMEIFEQAP 198 (610)
Q Consensus 128 ~~~~~~~-g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~ 198 (610)
|+.++.. |.. .+..+|...+..+.. .|+++.+.++|++...-....+..+-..|.. ......+.++..+
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~-- 148 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD-- 148 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH--
Confidence 8877764 433 356677777766542 3567778888877753211112222222211 1112222222221
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc-------ccHHHHHHHHHHHHHhCCCC
Q 037713 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF-------AVLELGKQIHGLVIALGYES 271 (610)
Q Consensus 199 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~ 271 (610)
.. +.+..|..++..+...-.. .+...|...+.--... +..+.+..+++.++... +.
T Consensus 149 -------------~~--~~y~~ar~~y~~~~~~~~~-~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 149 -------------TL--PIFQSSFQRYQQIQPLIRG-WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp -------------HH--HHHHHHHHHHHHHHHHHHT-CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred -------------Hh--HHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 11 2334444444444321100 1223343333332211 11345677888888754 55
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR-KD-VVSWTSIIVGTAQHGQAEETLALYDEMVSAG---------VKP--- 337 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p--- 337 (610)
+..+|-..+..+.+.|+.+.|..+|++... |+ ...|. .|+...+.++. ++.+.+.- ..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 677888888888899999999999987643 32 22232 23332222222 33332210 011
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG-HLDEAENLIKAM--PFEPDEPTWAALL 414 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll 414 (610)
....|...+....+.+..+.|..+|+.+ +.. ..+...|...+..-.+.| +.+.|..+|+.. ...-++..|...+
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 1244666666666678899999999988 421 234455544443333334 699999999877 2212345566677
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.-....|+.+.|..+|+++. .....+...++.-...|+.+.+.++++...+
T Consensus 362 d~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77778899999999999873 2345566666666777999989887777653
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=6.5e-07 Score=73.92 Aligned_cols=117 Identities=10% Similarity=-0.023 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666666777777777777776653 2335566777777777777777777777766 2233 46677777788
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888899999999988888888888888888888877765
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=7.2e-07 Score=74.07 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555555566666666665555441 2224455566666666666666666666555 2222 45667777777
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888877777778777766553
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=4.5e-07 Score=88.20 Aligned_cols=197 Identities=10% Similarity=-0.045 Sum_probs=149.4
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (610)
..|++++|.++++++.+..-. . .+...+++++|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357888999999888765321 1 111158899998887763 5678889999999999998
Q ss_pred HHHcC----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 330 MVSAG----VKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT--P--SLQHYTCLLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 330 m~~~g----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (610)
..+.. -.+ -..+|..+...|...|++++|...|++..+-+.-. + ...++..+...|.+ |++++|.+.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 76531 111 14578889999999999999999999887642111 1 13678888999988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC------cchHhHHHHhhhhcchhHHHHHHHH
Q 037713 401 M-PFEP---D----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP------SSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 401 m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
. .+.| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1111 1 45788888899999999999999999998765443 2566777888888999999999998
Q ss_pred Hh
Q 037713 467 MS 468 (610)
Q Consensus 467 m~ 468 (610)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.6e-05 Score=76.58 Aligned_cols=159 Identities=8% Similarity=-0.059 Sum_probs=121.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRRK---DV------VSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PN----EVTFV 343 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~ 343 (610)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999987642 11 13334666777788999999999999884322 23 33688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDY----GITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPD-EPTW 410 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 410 (610)
.+..+|...|++++|..+|+++.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999987522 11222 247888999999999999999998876 22222 6778
Q ss_pred HHHHHHHHhcCc-hhHHHHHHHHHhcC
Q 037713 411 AALLSACKHHRN-TEMGTRVANHLLSL 436 (610)
Q Consensus 411 ~~ll~~~~~~g~-~~~a~~~~~~~~~~ 436 (610)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888889999995 69999999988753
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.50 E-value=5.3e-07 Score=74.59 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=89.0
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 371 ITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 371 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
+.|+. ..+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44543 66778889999999999999999987 4445 578899999999999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|.+.++...+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=4.4e-06 Score=80.51 Aligned_cols=161 Identities=7% Similarity=-0.050 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DV------VSWTSIIVGTAQHGQAEETLALYDEMVSAGV---KPN--EV 340 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 340 (610)
.+...+..|...|++++|.+.+.+..+ + +. ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999988876542 1 11 2344456667788999999999999875321 122 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-------DE 407 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~~ 407 (610)
+++.+...|...|++++|..+|+++.+.....|+ ..+|..+...|.+.|++++|.+.+++. .+.+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988732111222 258888999999999999999998876 1111 16
Q ss_pred HHHHHHHHHHHhcCchhHH-HHHHHHHhc
Q 037713 408 PTWAALLSACKHHRNTEMG-TRVANHLLS 435 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 435 (610)
.+|..+...+...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888889999999999 777887764
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=1.4e-06 Score=73.79 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 355566677788888888888888876 3334 56777778888888888888888888888888888888888888888
Q ss_pred hhcchhHHHHHHHHHhh
Q 037713 453 SAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 453 ~~g~~~~a~~~~~~m~~ 469 (610)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88999888888887754
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=1.9e-06 Score=84.78 Aligned_cols=143 Identities=13% Similarity=0.016 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 382 (610)
+...|..+...|.+.|++++|+..|++..+....... + ..+.+.++- . .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 3455666666666666666666666666553211100 0 001111100 0 0146778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHH
Q 037713 383 DLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 460 (610)
.+|.+.|++++|...+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888887 3344 5778888999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHH
Q 037713 461 -SKVRKLM 467 (610)
Q Consensus 461 -~~~~~~m 467 (610)
.+.++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3455555
No 134
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=0.00013 Score=70.77 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=144.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C
Q 037713 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKC-S 287 (610)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g 287 (610)
......+..++|++++.++...+. -+...++.--......+ .++++..+.+.+.+.. +.+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 334445556788888888888763 45556666666666666 4788888888877654 44566777666666665 6
Q ss_pred -CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-
Q 037713 288 -DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAE--------ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL- 354 (610)
Q Consensus 288 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 354 (610)
++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 77888888888875 36677777666666656565 888888888887544 77777777777777765
Q ss_pred ------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC----
Q 037713 355 ------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL--------------------DEAENLIKAM-PF---- 403 (610)
Q Consensus 355 ------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~---- 403 (610)
++++++++.+++.. .+-|...|+-+-..+.+.|+. .+..++..++ +.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 67788888777763 345667777777777666653 2333333333 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-cCCCCC
Q 037713 404 ---EPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPED 440 (610)
Q Consensus 404 ---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~ 440 (610)
.+....+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 1345555566666666666666666666654 455543
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=7.8e-07 Score=78.50 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCch--hHH
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA-CKHHRNT--EMG 426 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 426 (610)
.|++++|...++...+. .+.+...|..+...|...|++++|...|++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444432 1223444555555555555555555555444 1112 33444444444 4455555 555
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...++++++.+|+++..+..++.+|...|++++|...++...+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=3e-06 Score=76.32 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=83.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHhccCCHH
Q 037713 285 KCSDIIAAKD---IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS----AGVKP-NEVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 285 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 356 (610)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44443333455666677777777777777777776654 11111 2345556666677777777
Q ss_pred HHHHHHHHhHHhc---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCch
Q 037713 357 KGRKLFKSMIEDY---GITP--SLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD----EPTWAALLSACKHHRNT 423 (610)
Q Consensus 357 ~a~~~~~~~~~~~---~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 423 (610)
+|...+++..+.. +-.| ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 7777776655431 1111 1234556666666677777766666554 11111 22244555556666666
Q ss_pred hHHHHHHHHHhcC
Q 037713 424 EMGTRVANHLLSL 436 (610)
Q Consensus 424 ~~a~~~~~~~~~~ 436 (610)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=5.3e-06 Score=66.88 Aligned_cols=109 Identities=13% Similarity=0.044 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555556666666666666666666553 2334566666666777777777777776665 2233 456677777777
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
...|++++|...++++++.+|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 788888888888888888888776655555443
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=3.8e-06 Score=75.58 Aligned_cols=82 Identities=10% Similarity=-0.107 Sum_probs=38.6
Q ss_pred hcCCHHHHHH---HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCCHhHHHHHHHHHhccccHH
Q 037713 183 RSGRKKDAME---IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE----GVDIVDPLVLSSIVGACANFAVLE 255 (610)
Q Consensus 183 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~t~~~ll~~~~~~~~~~ 255 (610)
..|++++|.+ .+..-+......++.+...+...|++++|+..|++.... +..+.....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 444333334455666666666666666666666665541 111012233334444444444444
Q ss_pred HHHHHHHHH
Q 037713 256 LGKQIHGLV 264 (610)
Q Consensus 256 ~a~~~~~~~ 264 (610)
.|...+...
T Consensus 84 ~A~~~~~~a 92 (203)
T 3gw4_A 84 AARRCFLEE 92 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=3.1e-06 Score=74.55 Aligned_cols=127 Identities=10% Similarity=0.097 Sum_probs=97.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCCH--
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL-LSRSGHL-- 391 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 391 (610)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+...+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888888888877753 236678888888888999999999999888774 23456777888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 392 DEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
++|...+++. ...| +...|..+...+...|++++|...++++++.+|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998887 3344 467788888889999999999999999999999875433
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.4e-06 Score=70.47 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..|..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566666777777777777777766 3333 466777777778888888888888888888888888888888888888
Q ss_pred hcchhHHHHHHHHHhh
Q 037713 454 AAMWQHVSKVRKLMSV 469 (610)
Q Consensus 454 ~g~~~~a~~~~~~m~~ 469 (610)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 8888888888777654
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=1.2e-06 Score=74.84 Aligned_cols=103 Identities=9% Similarity=-0.054 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345566667777888888888888877763 3346677777888888888888888888876 3334 45677778888
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
+...|++++|+..+++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 889999999999999999988877654
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=7.5e-06 Score=78.30 Aligned_cols=191 Identities=12% Similarity=-0.012 Sum_probs=114.6
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVG 313 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 313 (610)
+...+..+...+...|+++.|...+..+++.. +.+...+..+..+|.+.|++++|...|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444444444555555555555555555442 23566677777888888888888888887764 356788888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
|...|++++|+..|++..+.. |+. ..+...+....+ ..++... ..... .....+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEE-RRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHH-TCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHH-HHHhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999998877642 211 011111111111 1112222 22222 24555665555554433 68999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHH-HHhc-CchhHHHHHHHHHhcCC
Q 037713 393 EAENLIKAM-PFEPDEPTWAALLSA-CKHH-RNTEMGTRVANHLLSLK 437 (610)
Q Consensus 393 ~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~-g~~~~a~~~~~~~~~~~ 437 (610)
+|.+.+++. ...|+......-+.. +... +.+++|.++|.++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999988877 667765444333333 4444 67889999999887643
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=1.3e-05 Score=69.31 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 455666666777777777777777776642 225666777777777777777777777777663 23456677777777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCchhHHHHHHHHHh
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWA--ALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|.+.|++++|.+.+++. ...| +...+. .+...+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77788888888777776 2233 333443 33333666778888887777654
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=2.6e-06 Score=68.09 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHHHHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVY 451 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 451 (610)
..+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|. ++..+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445555555666666666666554 222 23455566666666666666666666666666666 666666666666
Q ss_pred hhh-cchhHHHHHHHHHhh
Q 037713 452 ASA-AMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~-g~~~~a~~~~~~m~~ 469 (610)
... |++++|.+.++...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666644
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=5.2e-06 Score=74.69 Aligned_cols=166 Identities=9% Similarity=-0.057 Sum_probs=100.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
......|++++|.+.|+.-.. .....|..+...+...|++++|+..|++..+.. |+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------ 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------ 77 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH------------
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh------------
Confidence 334445566666555554332 134556667777777777777877777776642 211000000
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
....-.. ......|..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|...++++++
T Consensus 78 ---~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 78 ---ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ---HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0000000 001356777788888888888888888776 3333 577788888889999999999999999999
Q ss_pred CCCCCCcchHhHHHHhhhhcchhHHH-HHHHHH
Q 037713 436 LKPEDPSSYILLSNVYASAAMWQHVS-KVRKLM 467 (610)
Q Consensus 436 ~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m 467 (610)
++|+++..+..+..++...|+.+++. ..++.|
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887776 444444
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=3.5e-06 Score=87.14 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
..+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456778888888888888774 2335778888888889999999999888887 4445 4778888888999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHH--hhhhcchhHHHHHHHH
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNV--YASAAMWQHVSKVRKL 466 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 466 (610)
+|++.++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999899888888 8889999999998774
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=4.1e-05 Score=71.81 Aligned_cols=126 Identities=9% Similarity=-0.082 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHhC
Q 037713 143 KSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN-----LFLWTALVSGLVQS 215 (610)
Q Consensus 143 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~ 215 (610)
.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... ...+..+..++.+.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34456667777777777777777763 222244555556777777777777776554321 23556666777777
Q ss_pred CChHHHHHHHHHHHHcCCCCC-CHhHHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 037713 216 RNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALG 268 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 268 (610)
|++++|++.|++.......|. ..........++.+.|+.++|..+++.+....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 777777777777664332111 22344455555666666666666666666553
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.30 E-value=3.1e-06 Score=72.21 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...|..+...+.+.|++++|+..|++...... -+...|..+..++...|++++|...|++..+. -+.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 34455555555566666666666666555421 13445555555555555555555555555542 1223344455555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 037713 384 LLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m 401 (610)
+|.+.|++++|...|++.
T Consensus 113 ~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555555444
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00015 Score=69.96 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=141.8
Q ss_pred HhCCChH-HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 213 VQSRNEI-DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV----------LELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 213 ~~~g~~~-~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
.+.|.+. +|++++..+...++ -+...|+.--......+. ++.+..+++.+.... +.+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455544 78888888887662 344444433333332222 566667777776654 446667776666
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 037713 282 MYAKCS--DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSHV--- 352 (610)
Q Consensus 282 ~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 352 (610)
.+.+.| .+++++.+++.+.+ +|..+|+--.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 666766 47888888887763 467778777777777777 47888888888876544 566666554444433
Q ss_pred -----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 037713 353 -----------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS-----------GHLDEAENLIKAM-PFEPDEPT 409 (610)
Q Consensus 353 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~ 409 (610)
+.++++++.+...+.. .+-|...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3467777777777763 344566666555555554 4567777777776 455653 3
Q ss_pred HHHHHHH-----HHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 410 WAALLSA-----CKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 410 ~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
|..+-.+ ....+..++....+.++.+++|....-|.-|.
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4322222 12346666777778888888876544444443
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=3.2e-06 Score=69.26 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788889999999888887 4445 5777888888889999999999999999999999988999999999999
Q ss_pred cchhHHHHHHHHHhh
Q 037713 455 AMWQHVSKVRKLMSV 469 (610)
Q Consensus 455 g~~~~a~~~~~~m~~ 469 (610)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888764
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=5.3e-06 Score=70.06 Aligned_cols=106 Identities=9% Similarity=-0.025 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34445556677777777777777777663 2345667777777777888888888877776 3333 455677777788
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
...|++++|...+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888888888888888888888776554443
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=6e-06 Score=68.97 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+...|..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666666677777777777776665 2223 3566666777777777777777777777777777777777777777
Q ss_pred hhhcchhHHHHHHHHHhh
Q 037713 452 ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~ 469 (610)
...|++++|...++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777776654
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.24 E-value=6.9e-06 Score=77.04 Aligned_cols=181 Identities=8% Similarity=-0.033 Sum_probs=121.0
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------
Q 037713 285 KCSDIIAAKDIFGRMRR--K-DVVSWTSI-------IVGTAQHGQAEETLALYDEMVSAGVKPN---------------- 338 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 338 (610)
..++...|.+.|.+... | ....|+.+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777763 2 45677776 4555555555555555554333 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 037713 339 ------EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE----P 408 (610)
Q Consensus 339 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 408 (610)
......+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 11233455667778888888888887754 2344335566666788888888888888876333332 3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCC--CC-CCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLK--PE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56677777888888888888888887433 43 3346677888888888888888888888653
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=1.3e-05 Score=82.80 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=47.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.+++..+. -+.+...|..+..+|.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444555555555444431 112444444555555555555555555554441 1223344455555555555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHH--HHhcCchhHHHHHHH
Q 037713 396 NLIKAM-PFEPD-EPTWAALLSA--CKHHRNTEMGTRVAN 431 (610)
Q Consensus 396 ~~~~~m-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 431 (610)
+.|++. ...|+ ...+..+..+ +...|++++|++.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555444 11121 1222222222 444555555555555
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.24 E-value=5.5e-06 Score=68.56 Aligned_cols=99 Identities=8% Similarity=0.028 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678889999999999999999999987 5555 67888889999999999999999999999999999999999999
Q ss_pred HhhhhcchhHHHHHHHHHhhC
Q 037713 450 VYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+|...|++++|.+.++...+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.22 E-value=3.6e-05 Score=62.45 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
.|..+...+...|++++|.++|+++.... +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444444444444444444431 123344444444444555555555555444442 122334444455555
Q ss_pred HhcCCHHHHHHHHHhC
Q 037713 386 SRSGHLDEAENLIKAM 401 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m 401 (610)
.+.|++++|...++++
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 5555555555555444
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=4.8e-06 Score=72.28 Aligned_cols=104 Identities=12% Similarity=0.010 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445556666666666666666666666553 2234556666666666666666666666655 2233 35556666666
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
+...|++++|...++++++++|+++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 6666666666666666666666655543
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=9.7e-06 Score=70.34 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 382 (610)
+...|..+...+.+.|++++|+..|++..+... -+...|..+..++...|++++|...|+...+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456788888899999999999999999888632 26778888889999999999999999998874 244578888999
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 037713 383 DLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m 401 (610)
.+|.+.|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999998887
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=8.4e-06 Score=67.06 Aligned_cols=107 Identities=9% Similarity=-0.076 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACK 418 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 418 (610)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4445555566666666666666666553 2334566666666666677777776666665 3333 3556666777777
Q ss_pred hcCchhHHHHHHHHHhcCC------CCCCcchHhHHH
Q 037713 419 HHRNTEMGTRVANHLLSLK------PEDPSSYILLSN 449 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 449 (610)
..|++++|...++++++++ |.++.....+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7777777777777777777 655544444433
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00011 Score=71.26 Aligned_cols=212 Identities=12% Similarity=0.097 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhc-C-ChHHHHHHH
Q 037713 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQH-G-QAEETLALY 327 (610)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~ 327 (610)
.++|..+.+.++..+ +.+..+|+.--..+...| .+++++++++.+.. ++..+|+.-...+.+. + +++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456778888888775 446677888777777888 59999999999874 4678898888777776 7 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC-------HH
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVG--------KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH-------LD 392 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~ 392 (610)
+++.+...+ |...|+.-.-.+.+.|..+ ++++.++++++. -+-|...|+....++.+.+. ++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 999986544 6777776555555555555 899999999884 34577888888888888886 78
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch--------------------hHHHHHHHHHhcCC------CCCCcch
Q 037713 393 EAENLIKAM-PFEP-DEPTWAALLSACKHHRNT--------------------EMGTRVANHLLSLK------PEDPSSY 444 (610)
Q Consensus 393 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~ 444 (610)
++++.++++ ...| |...|+-+-..+.+.|+. .....+...+.... +.++.+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888777 3344 677888777777766654 22333333333222 3455667
Q ss_pred HhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 445 ILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 445 ~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..|+++|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7899999999999999999999863
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.8e-05 Score=66.87 Aligned_cols=110 Identities=11% Similarity=-0.017 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAA 412 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 412 (610)
...+..+...+...|++++|...|+...+ ..|+ ...|..+...|...|++++|...+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444445555555555555555555443 2233 345555666666666666666666554 2223 4556666
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+..++...|++++|...++++++.+|+++..+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 667777777777777777777777777665555554443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1e-05 Score=68.37 Aligned_cols=98 Identities=7% Similarity=-0.032 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++.+|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888999999999999999999988 66777 67788888889999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|.+.++...+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988653
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=8.9e-06 Score=65.49 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
....+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567788889999999999999999987 3334 6778888889999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHhhC
Q 037713 452 ASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~ 470 (610)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988653
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=1.1e-05 Score=64.15 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP---DEPTWAALLS 415 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 415 (610)
..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445555666666777777776666653 2334566667777777777777777777666 3333 4667777777
Q ss_pred HHHhc-CchhHHHHHHHHHhcCCCCCC
Q 037713 416 ACKHH-RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 416 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888888777653
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=3.9e-05 Score=62.87 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 344444555555555555555555554432 123444555555555555555555555555442 22234455555555
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN 422 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 422 (610)
|.+.|++++|...|++. ...| +...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555554 2222 33444444444444443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=1.5e-05 Score=66.44 Aligned_cols=100 Identities=8% Similarity=-0.122 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLS 415 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 415 (610)
+...+..+...+...|++++|...|+...+. .+.+...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566666667777777777777777776653 2334566777777777777777777777766 3333 4667777777
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCC
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888877776
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.7e-05 Score=80.04 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++++++|++..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888999999999999998887 3334 57788899999999999999999999999999999999999999999
Q ss_pred hhcchhHHHH-HHHHHh
Q 037713 453 SAAMWQHVSK-VRKLMS 468 (610)
Q Consensus 453 ~~g~~~~a~~-~~~~m~ 468 (610)
+.|+++++.+ .++.|-
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998774 444443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=8.4e-06 Score=67.09 Aligned_cols=107 Identities=10% Similarity=0.013 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF----EPD----EPTWAA 412 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 412 (610)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444444555555555555554442 1223444555555555555555555555544 11 112 445666
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+...+...|++++|...++++++..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66667777777777777777777666 344444444443
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.11 E-value=7.3e-06 Score=67.71 Aligned_cols=94 Identities=5% Similarity=-0.014 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc-------chHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS-------SYIL 446 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 446 (610)
..+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45666777888888888888888876 4444 4677888888889999999999999999888876654 5666
Q ss_pred HHHHhhhhcchhHHHHHHHHHhh
Q 037713 447 LSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 447 l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
++.+|...|++++|.+.++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999998887643
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=4.4e-05 Score=74.97 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD----------------VVSWTSIIVGTAQHGQAEETLALYDEMVSA 333 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 333 (610)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466888899999999999999999998763 22 245555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 334 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
.. .+...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 13444444445555555555555555544432 112233344444444444444433
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.04 E-value=1.1e-05 Score=72.45 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=82.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------
Q 037713 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDV---------------- 304 (610)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 304 (610)
........|.++.+.+.+....+.. ......+..+...|.+.|++++|...|++..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455666666666665332211 11345677788899999999999999998763 222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 556666666666677777777766666542 224555666666666666666666666666552 12234555555555
Q ss_pred HHhcCCHHHHH
Q 037713 385 LSRSGHLDEAE 395 (610)
Q Consensus 385 ~~~~g~~~~A~ 395 (610)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=7.3e-05 Score=61.56 Aligned_cols=59 Identities=7% Similarity=0.005 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
+..+...+.+.|++++|++.|++.++... -+...|..+..+|...|++++|++.++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444311 123444444444444444444444444443
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=2.2e-05 Score=64.17 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=63.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 420 (610)
..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..|++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666777777777777777663 2335666777777777777777777777766 3344 456677777778888
Q ss_pred CchhHHHHHHHHHhcCCCCCC
Q 037713 421 RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~ 441 (610)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877653
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.8e-05 Score=78.33 Aligned_cols=161 Identities=7% Similarity=-0.131 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-CHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNE----VTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITP-SLQH 377 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 377 (610)
+..+...|...|++++|.+++.++...- ..++. ...+.+-..+...|+.+++..++....... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666777777776666654311 11111 112223333445566777777666554321 2222 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC---CC----Cc
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM-----P--FEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKP---ED----PS 442 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 442 (610)
+..|...|...|++++|..++++. + .+|. ..++..++..|...|++++|..++++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777777777777776654 1 1122 34566666667777777777777777664321 11 12
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHH
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.+..++..+...|++++|.+.+...
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666677777777777665544
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.4e-05 Score=67.69 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcC-------CCCCCcch----HhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSL-------KPEDPSSY----ILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|...++...+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777777 88877777 8888888888888888888777654
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=3.5e-05 Score=76.73 Aligned_cols=137 Identities=10% Similarity=-0.000 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+.+.|++++|+..|++..+. .|+.. .....+++.. .-+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~---------~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK---------LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG---------GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH---------HHHHHHHHHHHHHHH
Confidence 44666667777777777777777766542 00000 0001111100 011235788889999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888 5556 477888899999999999999999999999999999999999999999988887765
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=4.6e-05 Score=62.65 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=58.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSL---QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSA 416 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 416 (610)
+...+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444555666666666666665531 1122 35555666666677777776666665 22232 4456666666
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
+...|++++|...++++++..|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 777777778887777777777765433
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=1.5e-05 Score=65.64 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CcchHhHHHH
Q 037713 379 TCLLDLLSRSGHLDEAENLIKAM-PFEPDE----PTWAALLSACKHHRNTEMGTRVANHLLSLKPED---PSSYILLSNV 450 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 450 (610)
..+...+.+.|++++|...|++. ...|+. ..+..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567788999999999999987 333432 477778888999999999999999999999998 6779999999
Q ss_pred hhhhcchhHHHHHHHHHhhC
Q 037713 451 YASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~ 470 (610)
|...|++++|...++...+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.0011 Score=64.04 Aligned_cols=211 Identities=11% Similarity=0.078 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC--
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD----------IIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ-- 319 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-- 319 (610)
++|......++..+ +.+..+|+.--..+...|. +++++.+++.+.. ++..+|+.-...+...|+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46677777776654 3344555544333333332 6788888888763 578899988888888884
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc----------
Q 037713 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS---------- 388 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------- 388 (610)
+++++.+++++.+...+ |...|+.-...+...|. ++++++.+..+++. -+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999997654 77888877777777888 69999999999985 355677787777776665
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHHHHHHhcCCCCCCcchHhHHHH-
Q 037713 389 ----GHLDEAENLIKAM-PFEP-DEPTWAALLSACKHH-----------RNTEMGTRVANHLLSLKPEDPSSYILLSNV- 450 (610)
Q Consensus 389 ----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 450 (610)
+.++++++.+++. ...| |...|+-+-..+... +.++++++.+++++++.|++.-.+..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4588888888877 3344 677777655555444 457899999999999999875444333322
Q ss_pred --hhhhcchhHHHHHHHHHhh
Q 037713 451 --YASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 451 --~~~~g~~~~a~~~~~~m~~ 469 (610)
....|..+++...+..+.+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 2235666777777777754
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00011 Score=74.94 Aligned_cols=161 Identities=7% Similarity=-0.068 Sum_probs=95.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhC-CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhH
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALG-YESC----LFISNAIVDMYAKCSDIIAAKDIFGRMRR-----K----DVVS 306 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~ 306 (610)
+..+...|...|+++++.+.+..+.+.- ..++ ..+.+.+...+...|+.+.|..++..... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555444321 0011 11223333444455666666666655431 1 1346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--HH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSA--GV--KPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITPS--LQ 376 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~ 376 (610)
+..+...|...|++++|..++++.... +. +|. ..++..+...|...|++++|..+++...... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888876542 11 121 3467777888888888888888887765431 11111 25
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677777788888888887776554
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=5.2e-05 Score=62.16 Aligned_cols=105 Identities=11% Similarity=0.031 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCC----HHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI-TPS----LQHYTC 380 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~~ 380 (610)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+...- .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555555555555555555432 223444555555555555555555555555442110 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEPDEPTWA 411 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 411 (610)
+...|.+.|++++|.+.|++. ...|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 116 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHH
Confidence 555566666666666665554 3334443333
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=4.6e-05 Score=65.15 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCC------CCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKP------EDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+..+...+...|++++|...++++++..+ .....+..++.+|...|++++|.+.++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344455555566666666666665553321 112356667777777777777777766654
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=4.7e-05 Score=65.06 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEP-DEP 408 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 408 (610)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555555444332110111 234455555555666666665555544 1001 133
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
.+..+...+...|++++|...+++.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666677777777777777776643
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.92 E-value=5.7e-06 Score=67.16 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555555544444
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=3.9e-05 Score=66.24 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC-cchHhHHHH
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP-SSYILLSNV 450 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 450 (610)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467888888888999999999888877 3344 477888888889999999999999999999999876 334344333
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=4e-05 Score=75.37 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999887764 344432 223334444332211 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh-hhhcchhHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY-ASAAMWQHV 460 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 460 (610)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888877 3344 5778888888899999999999999999999998888888887774 344566677
Q ss_pred HHHHHHHhh
Q 037713 461 SKVRKLMSV 469 (610)
Q Consensus 461 ~~~~~~m~~ 469 (610)
.+.++.|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777776643
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=0.00054 Score=72.15 Aligned_cols=169 Identities=8% Similarity=0.029 Sum_probs=134.3
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-
Q 037713 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ----------AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG- 353 (610)
Q Consensus 288 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 353 (610)
..++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34677888877763 356778877777777776 89999999999887554 6778887777788888
Q ss_pred -CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 037713 354 -LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG-HLDEAENLIKAM-PFEP-DEPTWAALLSACKHH--------- 420 (610)
Q Consensus 354 -~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------- 420 (610)
+++++.+.++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999884 3446778888888888888 899999999888 5455 577788777776553
Q ss_pred -----CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 421 -----RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 421 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
+.++++.+.+.+++..+|++..+|..+..++.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.87 E-value=3.1e-05 Score=66.93 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888999999999999999999999999999999999999999999999999887653
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=5.4e-05 Score=74.40 Aligned_cols=152 Identities=7% Similarity=-0.028 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998764221111 1223344444443321 13677888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCchhHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE-PTWAALLSA-CKHHRNTEMGTRV 429 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~g~~~~a~~~ 429 (610)
|++++|...++...+. .+.+...|..+..+|...|++++|...|++. .+.|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 3446788999999999999999999999998 566654 344444444 3445677888899
Q ss_pred HHHHhcCCCCCC
Q 037713 430 ANHLLSLKPEDP 441 (610)
Q Consensus 430 ~~~~~~~~p~~~ 441 (610)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=7.9e-05 Score=63.05 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-P-------FEPD-EPTW----AALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|+++++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666554 3 3776 4577 889999999999999999999999999998876
Q ss_pred hHhHHH
Q 037713 444 YILLSN 449 (610)
Q Consensus 444 ~~~l~~ 449 (610)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655533
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=5.1e-05 Score=60.39 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchH
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYI 445 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 445 (610)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888888888888888877 3334 57778888888999999999999999999999987 56677
Q ss_pred hHHHHhhhhcchhHHHHH
Q 037713 446 LLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 446 ~l~~~~~~~g~~~~a~~~ 463 (610)
.++.++...|++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 777777777776666543
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.78 E-value=1.7e-05 Score=64.36 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 037713 352 VGLVGKGRKLFKSMIEDYG--ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
.|++++|+..|++..+. + -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666665541 1 1223455666666666777777777766665 2233 3556666666677777777777
Q ss_pred HHHHHHhcCCCCCCc
Q 037713 428 RVANHLLSLKPEDPS 442 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~ 442 (610)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 777777777776653
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00011 Score=75.45 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=94.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYG--I---TPS-LQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPTWA 411 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 411 (610)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888777665421 1 122 367888888888889988888887765 23344 45688
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhc-----CCCCCCc---chHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLS-----LKPEDPS---SYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.|...|...|++++|+.+++++++ ++|++|. ....|..++...|++++|+.++..+++.-.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888889999999999999998874 4666654 4457888889999999999999999875433
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00011 Score=55.93 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777777888888888888888776 3333 56778888888999999999999999999999988888888888876
Q ss_pred hhc
Q 037713 453 SAA 455 (610)
Q Consensus 453 ~~g 455 (610)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00018 Score=56.21 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888899999999999999999999999999999999999999999999999887754
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.57 E-value=0.0008 Score=69.05 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--------------EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++.+.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 44566667777777777777777777766422111 467888888888899999999999888774
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHH-HHHHHh
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTR-VANHLL 434 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~-~~~~~~ 434 (610)
.+.+...|..+..+|.+.|++++|...|++. .+.|+ ...+..+...+...++.+++.+ .+++++
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888999999999999988887 55664 4567777777778887777764 344444
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.0007 Score=67.22 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR-------------------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 336 (610)
+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 44455566666666666666655432 1345566666666666666666666666665421
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 337 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
-+...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24555666666666666666666666666552 1224455555555555555555544
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00018 Score=57.82 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455544 3334 4667777777788888888888888888888888888888888888888888888888777654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=0.00017 Score=60.84 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=62.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc----------hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh
Q 037713 387 RSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN----------TEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444555666555555 2333 34555555555555544 56999999999999999999999999999987
Q ss_pred c-----------chhHHHHHHHHHhhC
Q 037713 455 A-----------MWQHVSKVRKLMSVM 470 (610)
Q Consensus 455 g-----------~~~~a~~~~~~m~~~ 470 (610)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988754
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.33 E-value=0.00094 Score=68.60 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CC
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR-------K----DVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGV-KP 337 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p 337 (610)
+++.|...|...|++++|..++++..+ + ...+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555554444331 1 134566666666666777777666666543 121 12
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 338 N-EVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 338 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+ ..+...+-.++...+.+++|..++..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22334444555566666667666666654
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.26 E-value=0.0062 Score=64.04 Aligned_cols=151 Identities=12% Similarity=0.031 Sum_probs=119.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL----------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
....++|++.++++.+.... +...|+.--.++.+.|+ ++++.+.++.+.+. -+-+..+|..-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34457889999999986332 45556655555555666 89999999999884 4456778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh-------
Q 037713 387 RSG--HLDEAENLIKAM-PFEP-DEPTWAALLSACKHHR-NTEMGTRVANHLLSLKPEDPSSYILLSNVYASA------- 454 (610)
Q Consensus 387 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 454 (610)
+.| +++++.++++++ ...| |...|+.-.......| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999999 3333 7888988888888888 899999999999999999999999988888774
Q ss_pred -------cchhHHHHHHHHHhhC
Q 037713 455 -------AMWQHVSKVRKLMSVM 470 (610)
Q Consensus 455 -------g~~~~a~~~~~~m~~~ 470 (610)
++++++.+.++.....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 6678888887776543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00028 Score=55.87 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555566666666666666655542 12445555555555566666666666555543
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0013 Score=50.38 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCc---hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 404 EPDEPTWAALLSACKHHRN---TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...++.+.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467777777777654444 799999999999999999999999999999999999999999999875443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.19 E-value=0.00021 Score=60.29 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CchhHHHHHHHHHhcCCCCCC
Q 037713 392 DEAENLIKAM-PFEPD-EPTWAALLSACKHH-----------RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 441 (610)
++|+..|++. .+.|+ ...|..+..+|... |++++|++.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3555555555 33443 44555566665554 589999999999999999874
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.16 E-value=0.0016 Score=52.11 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+...|+...+ ..+.+...+..+...|.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555544 12334566666666667777777777766665 2233 355666677777777777777777777776
Q ss_pred CCCC
Q 037713 436 LKPE 439 (610)
Q Consensus 436 ~~p~ 439 (610)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.007 Score=50.27 Aligned_cols=111 Identities=12% Similarity=-0.033 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDE 393 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 393 (610)
++.++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. .+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777766 33433 555566666777777777777663 345666666666666 667777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCC
Q 037713 394 AENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 394 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 437 (610)
|.+.|++.-..-+...+..|...|.. .++.++|...++++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77776665212345555556666665 566666666666666554
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.011 Score=49.12 Aligned_cols=86 Identities=7% Similarity=-0.067 Sum_probs=40.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-- 351 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 351 (610)
|..+|...+.+++|.+.|++..+ .+..++..|...|.. .++.++|+++|++..+.| +...+..|...|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 33334343444444444444332 234444444444444 455555555555555443 33444444444444
Q ss_pred --cCCHHHHHHHHHHhHH
Q 037713 352 --VGLVGKGRKLFKSMIE 367 (610)
Q Consensus 352 --~g~~~~a~~~~~~~~~ 367 (610)
.+++++|..+|+...+
T Consensus 108 g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 4555555555555544
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.01 E-value=0.0028 Score=63.99 Aligned_cols=116 Identities=14% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhc-----CCCCCC---cc
Q 037713 382 LDLLSRSGHLDEAENLIKAM------PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLS-----LKPEDP---SS 443 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 443 (610)
+.-+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888887777655 12222 45677788888888888888888888773 334443 46
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHH
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 515 (610)
+..|+.+|..+|++++|..++++..+--.. . -...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-T-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-h-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 778888999999999999888876542110 0 01368888888877777776665
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.95 E-value=0.0036 Score=48.57 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+...|..+...|...|++++|+..|++..+.... +...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555555543211 234445555555555555555555555443
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.92 E-value=0.0092 Score=44.76 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 344555555555666666666666555432 123445555555666666666666666655542 12234444444444
Q ss_pred HH
Q 037713 385 LS 386 (610)
Q Consensus 385 ~~ 386 (610)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.88 E-value=0.015 Score=56.27 Aligned_cols=137 Identities=12% Similarity=0.026 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC-C---HHHHHHHHHHhHH
Q 037713 302 KDVVSWTSIIVGTAQ--HG---QAEETLALYDEMVSAGVKPN-EVTFVGLIYACSH----VG-L---VGKGRKLFKSMIE 367 (610)
Q Consensus 302 ~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~----~g-~---~~~a~~~~~~~~~ 367 (610)
.+..+|...+.+... .+ ...+|..+|++..+. .|+ ...|..+..++.. .+ . .....+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 366667766655432 23 246888888888875 454 3344433333320 00 0 0111111111111
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 368 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
....+.+..+|..+.-.+...|++++|...++++ ...|+...|..+...+...|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0122445566666655555567777777776666 334665555555555666777777777777777776654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.70 E-value=0.0074 Score=60.83 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYG--IT---PS-LQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPTWAALL 414 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 414 (610)
+.|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34667777777766554311 11 22 366777778888888888887777665 23344 45677888
Q ss_pred HHHHhcCchhHHHHHHHHHhc-----CCCCCCc
Q 037713 415 SACKHHRNTEMGTRVANHLLS-----LKPEDPS 442 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 442 (610)
..|..+|++++|+.+++++++ ++|++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888888764 4676653
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.66 E-value=6.1e-05 Score=74.19 Aligned_cols=237 Identities=10% Similarity=0.077 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 148 (610)
...|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 344888888888888888887655321 25566778888888888888877777655554 344555677888
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CChhh
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV------------------------RNLFL 204 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 204 (610)
+|++.+++.+-++++ ..+|+.-.....+-|...|.++.|.-+|..+.. .++.+
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888888876544332 235665666677777777777777777765541 25667
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
|-.+-.+|+..+.+.-|.-.--.+.-. +.....++..|-..|.+++-..+++..... -.....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh------adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH------ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 888877877777776654443333321 111223444555666666666665554421 1345667777777777
Q ss_pred hcCCHHHHHHHHHhcC----CC-------ChhHHHHHHHHHHhcCChHHHHH
Q 037713 285 KCSDIIAAKDIFGRMR----RK-------DVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
|-. .++-.+.++... -| ....|.-++-.|.+..+++.|..
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 652 222222222211 11 34557777777777777766543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.014 Score=58.97 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=67.9
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 037713 346 IYACSHVGLVGKGRKLFKSMIEDYG--ITP----SLQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPT 409 (610)
Q Consensus 346 l~a~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 409 (610)
+..+.+.|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445566777777777777654311 112 1356777888888888888888877765 23344 456
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhc-----CCCCCCcch
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLS-----LKPEDPSSY 444 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 444 (610)
++.|...|...|++++|+.+++++++ ++|++|.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 78888889999999999999988874 567766443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.58 E-value=0.0069 Score=46.55 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEP-DEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
....+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566778888888888776 3344 455 677777778888888888888888888888876655
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.53 E-value=0.0025 Score=64.23 Aligned_cols=83 Identities=10% Similarity=0.000 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhc-----CCCCCC---cchHhHH
Q 037713 387 RSGHLDEAENLIKAM---------PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLS-----LKPEDP---SSYILLS 448 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 448 (610)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+|..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889998888765 22333 46788999999999999999999999884 345544 4688999
Q ss_pred HHhhhhcchhHHHHHHHHHhh
Q 037713 449 NVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.45 E-value=0.076 Score=42.49 Aligned_cols=139 Identities=8% Similarity=-0.005 Sum_probs=101.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
-.|..++..++..+.... .+..-||.++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHHH
Confidence 356777777777776654 245556666655555556666666666553322 2 13567777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 396 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.-+-.++ .+...+..-+.....+|.-++-.+++..++.-+|.+|.....++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7776664 245566778888999999999999999987777778899999999999999999999999999999885
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.43 E-value=0.18 Score=55.47 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 037713 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223 (610)
Q Consensus 144 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (610)
..++..+.+.|..++|.++.+.- ..-.....+.|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 56666677777777776655321 111233456777777777776653 45677788888888888888887
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (610)
.|.++.. . ..+...+...++.+....+-+.+...| -++.-..+|.++|++++|.+++.+
T Consensus 703 ~y~~~~d-------~---~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD-------L---ESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC-------H---HHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC-------h---hhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 7776632 1 122333333455554444444433333 122333445556666666555443
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.35 E-value=0.017 Score=48.12 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhcCC-C-CCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 405 PDEPTWAALLSACKHHR---NTEMGTRVANHLLSLK-P-EDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++..+...+..++.+.+ +.++|+.+++.+++.+ | .+...+..|+-+|.+.|++++|.+.++.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444555555544 4445666666555554 4 234455555556666666666666655554
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.29 E-value=0.006 Score=46.93 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=53.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCc-chHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPS-SYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445678899999999999999999999999 9999999999999999999999998754
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.93 E-value=0.23 Score=48.03 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 037713 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378 (610)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (610)
.+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 355566666555555677777777777666653 5666665666666666777777766666654 34554444
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.92 E-value=0.24 Score=54.54 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=60.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
+....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3445678888887776665 3557788888888888888888888877642 1223333444555555444
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+-+..... | -++.-..+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44333321 1 1223334455566666666666555
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.77 E-value=0.056 Score=41.03 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHh
Q 037713 372 TPSLQHYTCLLDLLSRSGH---LDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 446 (610)
+.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 4566777777777754444 68888888887 44554 5566666677888999999999999999988873 33444
Q ss_pred HHHH
Q 037713 447 LSNV 450 (610)
Q Consensus 447 l~~~ 450 (610)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.77 E-value=0.025 Score=52.47 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=61.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCchhHHHHHHHHHhcCCCCC-CcchHhHHHHhhhh-cchhH
Q 037713 391 LDEAENLIKAM-PFEPD---EPTWAALLSACKH-----HRNTEMGTRVANHLLSLKPED-PSSYILLSNVYASA-AMWQH 459 (610)
Q Consensus 391 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 459 (610)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|+. ..+++..++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555554 45555 4556666666766 488888888888888888864 88888888888774 88888
Q ss_pred HHHHHHHHhhCCCccCCc
Q 037713 460 VSKVRKLMSVMEVKKEPG 477 (610)
Q Consensus 460 a~~~~~~m~~~~~~~~~~ 477 (610)
+.+.++..........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888888887665554454
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.68 E-value=0.0017 Score=64.28 Aligned_cols=398 Identities=10% Similarity=0.045 Sum_probs=241.5
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~ 116 (610)
.+.+|..|..++.+.|++.+|.+-|=+ ..|+..|..+|.+..+.|.+++-+..+.-.++. .-+...=+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 567899999999999999988876644 456677889999999999999988887766553 234455567888999
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC------------------------CCChh
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK------------------------LKNSV 172 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------~~~~~ 172 (610)
+.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998876544432 4676667778888889999999988887764 13778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc
Q 037713 173 SWTAMLSAYARSGRKKDAMEIFEQ-APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251 (610)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 251 (610)
||-.+-.+|...+.+.-|.-.--. +..+| -...++.-|-..|.+++-+.+++.-. |......-.|+-+.-.|++-
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc
Confidence 999999999999988776544222 11111 11235566888899999998888776 34446677777777777764
Q ss_pred ccHHHHHHHHHHHH-HhCCCC------chhHHHHHHHHHHhcCCHHHHHHH-------------HHhcCC--CChhHHHH
Q 037713 252 AVLELGKQIHGLVI-ALGYES------CLFISNAIVDMYAKCSDIIAAKDI-------------FGRMRR--KDVVSWTS 309 (610)
Q Consensus 252 ~~~~~a~~~~~~~~-~~~~~~------~~~~~~~li~~y~~~g~~~~A~~~-------------~~~~~~--~~~~~~~~ 309 (610)
. .++..+.++... +.+++. ....|.-++-.|.+-.+++.|... |.++.. .|...|-.
T Consensus 277 ~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYK 355 (624)
T 3lvg_A 277 K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 355 (624)
T ss_dssp C-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHH
T ss_pred C-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHH
Confidence 3 222222221111 112221 345688888999999999877432 111111 24444433
Q ss_pred ---------------HHHHHHhcCChHHHHHHHHHHHHcC-CCC--------CHHHHH-HHHHHHhccCCHHHHHH----
Q 037713 310 ---------------IIVGTAQHGQAEETLALYDEMVSAG-VKP--------NEVTFV-GLIYACSHVGLVGKGRK---- 360 (610)
Q Consensus 310 ---------------li~~~~~~g~~~~A~~l~~~m~~~g-~~p--------~~~t~~-~ll~a~~~~g~~~~a~~---- 360 (610)
|+.++...=+...+.++|++.-... ++| |....| ++-..|....+++.-+.
T Consensus 356 Ai~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ 435 (624)
T 3lvg_A 356 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 435 (624)
T ss_dssp HHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSS
T ss_pred HHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4444443444555555555421100 111 222222 23334444444433221
Q ss_pred --------HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 037713 361 --------LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432 (610)
Q Consensus 361 --------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (610)
+-+++.+ .+-.+.-..-...|.+.++++++.++.++=++-.| .+...+..|+.+.++++++-
T Consensus 436 ydNFD~i~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~y 505 (624)
T 3lvg_A 436 YDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQW 505 (624)
T ss_dssp CCCSCTTHHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHH
T ss_pred hccccHHHHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11223333445567788888888777655433222 33445677888888888877
Q ss_pred HhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 433 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
.++.+- ...|....-.|...=+.+-+.++
T Consensus 506 Fv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 506 FLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 776543 35566666666555566555543
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.49 E-value=3 Score=43.77 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFV----GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
.+.+.|..+|....... ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999999887543 22333222 2333344455355666666665432 2343334445555567899999
Q ss_pred HHHHHHhCCCCC-CHHHH-HHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 394 AENLIKAMPFEP-DEPTW-AALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 394 A~~~~~~m~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
|...|+.|+..+ +..-| .=+..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999995433 21222 2244467788999999999999875
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.42 E-value=0.065 Score=41.64 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-----P----FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555566666665555543 0 123466778888889999999999999999999999886554333
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.35 Score=41.29 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=84.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455788888888887776 4677899999999999999999988887642 2234444555677766655
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 54443332 2 2344445566688999999888887643332221 23466677777777655
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.39 E-value=0.042 Score=45.70 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 373 PSLQHYTCLLDLLSRSG---HLDEAENLIKAM-PFE-P--DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
++..+.-.+.-++.+.+ +.+++..++++. ... | +...+..|.-+|.+.|++++|.+.++.+++.+|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555555555 344555555554 112 3 24445667777899999999999999999999987543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.33 E-value=0.22 Score=39.76 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
|.-++.+.|+++.|.+.++.+++.+|++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3333445555555555555555555544
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.84 E-value=0.19 Score=46.72 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCch
Q 037713 356 GKGRKLFKSMIEDYGITPS---LQHYTCLLDLLSR-----SGHLDEAENLIKAM-PFEPD--EPTWAALLSACKH-HRNT 423 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~~ 423 (610)
.+|...+++..+ +.|+ -..|..|...|.+ -|+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 444445555544 3454 3567777777777 37888888888777 55553 4555556666655 4788
Q ss_pred hHHHHHHHHHhcCCCC
Q 037713 424 EMGTRVANHLLSLKPE 439 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~ 439 (610)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887765
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.50 E-value=0.26 Score=38.12 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYG-----ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
...+...+.+.|+++.|...|+...+... -.+...++..|..+|.+.|++++|...+++. .+.|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 33445555555555555555555544321 1123455666666666666666666666655 34444
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.79 E-value=1.9 Score=35.09 Aligned_cols=64 Identities=3% Similarity=-0.005 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhcCCCC-CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 405 PDEPTWAALLSACKHHR---NTEMGTRVANHLLSLKPE-DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|+..+--.+..++.+.. +..+++.+++.+....|. .......|+-++.+.|++++|.+..+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444333444444433 334556666666555553 22344455666666666666666666554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.54 E-value=0.63 Score=37.14 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK---GRKLFKSMIEDYGITP--SLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 392 (610)
.....+.+-|.+....|. |+..|-..+..++.++..... |+.+++...+. -.| .....-.|.-++.|.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555655555444 677776677778888777665 88888777653 223 2344555667788888888
Q ss_pred HHHHHHHhC-CCCCC
Q 037713 393 EAENLIKAM-PFEPD 406 (610)
Q Consensus 393 ~A~~~~~~m-~~~p~ 406 (610)
+|.+.++.+ .++|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888877 55564
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.41 E-value=3.6 Score=33.07 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=92.4
Q ss_pred hcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 363 (610)
-.|.+++..++..+...+ +..-+|=.|.-....-+-+-..+.++..-. --|. ...|++.....-+-
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHHH
Confidence 358888888888877653 444555555555555555555555554422 1121 23455555555554
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA-M-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
.+ ..+.+....-++.+...|+-++-.+++.. . ..+|++.....+..||.+.|+..+|.+++.++-+.+-
T Consensus 86 ~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 86 IN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43 23456777778888999999999999988 4 5567888999999999999999999999998876653
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.73 Score=49.37 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=48.3
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|.-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6678999999999999999999999999999999999999999999988874
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.18 E-value=4.9 Score=34.16 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=28.1
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
...++|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344666666666665554 34556666666666666666666666553
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.38 E-value=12 Score=35.42 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=96.8
Q ss_pred hHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHH----HHhHHCCCCCCChhhHHHHHHHH
Q 037713 40 LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF----STMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.+ +++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 355667778889999999987643 123455667776666554 3344455 788888888887777
Q ss_pred hccCCcH-----HHHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 037713 116 GSLGATR-----LGKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188 (610)
Q Consensus 116 ~~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 188 (610)
.....-+ -..+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|-.-..++...+..++--+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6554321 1122223333333 23467777888888888888888888774222222356655555444443321
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 189 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
++- .. ..-.+-.|...++...|..+|....
T Consensus 185 e~d----------lf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 TAP----------LY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GHH----------HH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHH----------HH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111 11 1122334556667777766655544
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.74 E-value=23 Score=38.92 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=136.7
Q ss_pred HHHHHHHHcCCCchHH-HHHH-HHhHHCCCCCCChhhHHHHH-HHHhccCCcHHHHHHHHHHHhcC--CCCChhHHHHHH
Q 037713 73 ASILTAYNQANLPQKT-ISIF-STMLALDKLQPDHFVFASLV-KACGSLGATRLGKQVHACFVLSP--FCDDDVVKSSLV 147 (610)
Q Consensus 73 ~~li~~~~~~g~~~~A-~~~~-~~m~~~~~~~pd~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li 147 (610)
.++.+++...|-..+. +... .++.+. + +..-+.++. -+....|+.+++..++...+..+ -.+.......+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA---Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC---C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc---c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 3556778888765443 2222 233331 2 222333322 23456677777777776655421 122233444455
Q ss_pred HHHHhCCChHHHHHHHHhcC-CCC--------h-h-hHHHHHHHHHhcCC-HHHHHHHHhhC-CCCChh-h-HH--HHHH
Q 037713 148 DMYAKCGLPNNARAVFDSIK-LKN--------S-V-SWTAMLSAYARSGR-KKDAMEIFEQA-PVRNLF-L-WT--ALVS 210 (610)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~m~-~~~--------~-~-~~~~li~~~~~~g~-~~~A~~~~~~~-~~~~~~-~-~~--~li~ 210 (610)
-+.+.+|..+++..++.... ..+ . + .-.++.-|++-.|. -+++...+..+ ...+.. . .. +|..
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGl 498 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGL 498 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 55666676666766655433 222 1 1 11222223332332 12333333332 223321 1 11 2223
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHH--HHhccccHHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhc
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--ACANFAVLELGKQIHGLVIALGYESCLFIS--NAIVDMYAKC 286 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~y~~~ 286 (610)
.++..|+.+-...++..+.+.. .+ .+...+.- ++...|+.+.+..+.+.+... ..|..... .++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HG-NITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC---cH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 3456666666666666665532 22 22222333 333567777777776666543 22333222 2344567777
Q ss_pred CCHHHHHHHHHhcCC-C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHH
Q 037713 287 SDIIAAKDIFGRMRR-K--DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV-GKGRKLF 362 (610)
Q Consensus 287 g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~ 362 (610)
|+.....+++..+.. + ++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 887777767776652 2 22222223334444666666667766555543 34443333333344444443 5667777
Q ss_pred HHhHH
Q 037713 363 KSMIE 367 (610)
Q Consensus 363 ~~~~~ 367 (610)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77754
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.73 E-value=13 Score=34.88 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=98.5
Q ss_pred hHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHH----HHhHHCCCCCCChhhHHHHHHHH
Q 037713 40 LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF----STMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.+ +++|..+...++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 4667778888889999998876541 23455667776666653 3334445 788888777777776
Q ss_pred hccC--Cc---HHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhc---C
Q 037713 116 GSLG--AT---RLGKQVHACFVLSPF--CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS---G 185 (610)
Q Consensus 116 ~~~~--~~---~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g 185 (610)
.... .. .-......+-.+.|- ..|+.....+...|.+.|++.+|+.-|-.-...|...+..++--+.+. |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5532 11 222233333333331 236778888888888888888888877533323455565555555444 4
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
...++--..- -.+-.|.-.|+...|..+|....
T Consensus 183 ~~~e~dlf~~-----------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFS-----------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHH-----------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 4443321111 12334555667777776666554
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.36 E-value=2.2 Score=35.04 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 389 GHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 389 g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
++.++|.++|+.+ .+ +-=...|-....--.++|+++.|.+++.+++++.|.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5666666666655 10 00155665555556678888888888888888887643
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.31 E-value=15 Score=34.85 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCCHhHHHHHHHHHh
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF----IEMRREGVDIVDPLVLSSIVGACA 249 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~p~~~t~~~ll~~~~ 249 (610)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.+++ +|......++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~-~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR-VDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence 44566667777888888776653 234455667765555444 445566777 88888777777776
Q ss_pred ccccH-----HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 037713 250 NFAVL-----ELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322 (610)
Q Consensus 250 ~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 322 (610)
....- .-.......-.+.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 55431 12223333334444 234677888899999999999999998853222223566555544444333211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 323 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+|...-..++ -|...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222233 34556788888887776655
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.91 E-value=12 Score=36.54 Aligned_cols=157 Identities=12% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHH-----
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRR--------KDVVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVKPNEVTF----- 342 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~----- 342 (610)
..|...|.+.|+.++..+++..... +....-..++..+... +..+.-.++..+..+-. +-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566666666666666555542 1223344455555442 22233333333332210 0011222
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHH
Q 037713 343 -VGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM-----PFEPDEPTWAA 412 (610)
Q Consensus 343 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 412 (610)
..++..|...|++.+|.+++..+.+...-..| .++|..-+.+|...|++.++...+... .+.|++.+-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 13555666666666666666666553221111 244555566666666666666665544 12233322211
Q ss_pred H--HHH--HH-hcCchhHHHHHHHHHh
Q 037713 413 L--LSA--CK-HHRNTEMGTRVANHLL 434 (610)
Q Consensus 413 l--l~~--~~-~~g~~~~a~~~~~~~~ 434 (610)
+ .+| +. ..+++..|...|-+.+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 111 34 5666666666665554
No 244
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.56 E-value=12 Score=32.69 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
+|..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4444555555555555544333333333334444333344444444443
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.14 E-value=17 Score=34.12 Aligned_cols=168 Identities=10% Similarity=0.082 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCCHhHHHHHHHHHh
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS----FIEMRREGVDIVDPLVLSSIVGACA 249 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~p~~~t~~~ll~~~~ 249 (610)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++ ++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~-~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVK-VDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence 45666777777888888777653 23445666776665554 4444556776 78877777777765
Q ss_pred ccc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CC
Q 037713 250 NFA-----VLELGKQIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH---GQ 319 (610)
Q Consensus 250 ~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 319 (610)
... ...-.........+.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 532 12223333444444432 247788889999999999999999888733323455555555544443 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
..++-- ..-..++ -|...|++..|..+|+...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1111222 344568888888888877654
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.13 E-value=2.3 Score=34.95 Aligned_cols=55 Identities=4% Similarity=-0.172 Sum_probs=42.1
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
..+++++|.++|+.++.+...-+..+...+.--.+.|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3479999999999998764333445556666677899999999999988765543
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.07 E-value=2.4 Score=33.96 Aligned_cols=43 Identities=5% Similarity=0.092 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCC-CCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 425 MGTRVANHLLSLKPE-DPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+|+.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444432 1233344444555555555555554444
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.62 E-value=4 Score=34.19 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAMP 402 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (610)
+.---+..+|.+.|++++|+.+++.+|
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333335555556666666666666553
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.26 E-value=2.9 Score=31.54 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
+.-+..+-+..+....+.|+.....+.++||-+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344667777777778889999999999999999999999999999988753 3445567777653
No 250
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.02 E-value=16 Score=31.51 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=50.2
Q ss_pred HccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCh
Q 037713 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140 (610)
Q Consensus 61 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 140 (610)
++.+..+|...-...+.++.+.+.. .+...+.++.. .+|...-...+.++...++.+....+. .++. .++.
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~ 90 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDG 90 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCH
Confidence 3334444444444444444444442 22333333332 234444444445555544433222222 2222 3455
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 141 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
.+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5555555555555554444444444444444444444444444443
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.95 E-value=3.1 Score=44.52 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=40.1
Q ss_pred HHHHHhCCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 147 VDMYAKCGLPNNARAVFDSIK--LK-NSVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
.+.+...|+++-|+++-++.. .| +-.+|..|..+|.+.|+++.|+-.++.+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445667788888888877765 34 56788888888888888888888888876
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.34 E-value=37 Score=33.92 Aligned_cols=186 Identities=11% Similarity=0.109 Sum_probs=119.7
Q ss_pred CCChHHHHHHHHHHHHcC-----CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh-CCCCchh--HHHHHHHHHHhc
Q 037713 215 SRNEIDAFYSFIEMRREG-----VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-GYESCLF--ISNAIVDMYAKC 286 (610)
Q Consensus 215 ~g~~~~A~~~~~~m~~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~y~~~ 286 (610)
.|++++|++.+..+.+.. .. ........++..|...++++...+....+.+. |..+... ..+.+++.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~-s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLA-SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 378999999887776532 22 45667888999999999999887777666543 3222211 122233333333
Q ss_pred CC--HHHHHHHHHhcCCC----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 037713 287 SD--IIAAKDIFGRMRRK----------DVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPN---EVTFVGLIYAC 349 (610)
Q Consensus 287 g~--~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~ 349 (610)
.. .+.-..+.+....- .......|...|-..|++.+|..++.++... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 23333444444321 1123456778888999999999999998653 22222 23566677889
Q ss_pred hccCCHHHHHHHHHHhHHh-cCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 350 SHVGLVGKGRKLFKSMIED-YGI--TPS--LQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
...+++.+|..++.++... ... .|+ ...|.+++..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999887432 122 222 256788888888999999988776554
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.95 E-value=42 Score=38.31 Aligned_cols=164 Identities=9% Similarity=0.012 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccH
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 254 (610)
..++..+.+.+..+.+.++..-.+. +..+--.+..+|...|++++|.+.|++.-. |+. .+.... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~-~~~~l~----------~~~ 882 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLY-SHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCT-TCCCSC----------SSH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhc-ccchhh----------hhh
Confidence 3456666777777777766555443 333333455667778888888888866421 111 110000 000
Q ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC----hhHHHHHHHHHHhcCChHHHH
Q 037713 255 ELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRM----RRKD----VVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 255 ~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~ 324 (610)
.. ...+.... ...-..-|.-++..+.+.|.++.+.++-... ...+ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00001100 0111223444555555555555554443222 1222 125788888888889999888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 325 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
..+-.+.....+ ...+..|+...+..|..++
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888877765443 4456666666666665543
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.07 E-value=14 Score=27.74 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (610)
.-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-+|... +.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 34555555555555442 222222223344555666555555555555555555554432 344444444444
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.68 E-value=8.7 Score=28.98 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=40.2
Q ss_pred chHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037713 85 PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148 (610)
Q Consensus 85 ~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 148 (610)
.-+..+-++.+...+ +.|++....+.+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 335556666666666 77788888888888888888888888777665432 223445555543
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.59 E-value=7.9 Score=38.04 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|.+.|+...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555666666666655555431 2255556666666666666666666655543
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.36 E-value=7.6 Score=32.48 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=10.6
Q ss_pred HHHHHHhcCchhHHHHHHHH
Q 037713 413 LLSACKHHRNTEMGTRVANH 432 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~ 432 (610)
+..+|.+.++.++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44445555555555555543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.35 E-value=2.5 Score=41.61 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh-----CCCccCC
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV-----MEVKKEP 476 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 476 (610)
..++.++...|+++++...++.++..+|-+...|..|+.+|.+.|+..+|.+.|+..++ .|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34555666777788888777777778887777788888888888888888777776543 4665544
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.52 E-value=13 Score=27.79 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=26.5
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+...|++++|..+.+....||+.+|-+|-. .+.|..+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555555555555555555433 34455555555555555544
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.07 E-value=29 Score=30.08 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 037713 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183 (610)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 183 (610)
+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4445555555555555543333333333333333333333333333
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.86 E-value=6.3 Score=31.49 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
.-+..+-+..+....+.|+.......+++|-+.+++..|.++|+..+.+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3456666777777888999999999999999999999999999998875 44446677777653
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.41 E-value=18 Score=28.88 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
+.-|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33455556666666666666666666666664
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.36 E-value=18 Score=27.18 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037713 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333 (610)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 333 (610)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++...+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444444444444432 22222222344567899999999999999999999988755 4678888888888777766
Q ss_pred CCCCCHHHHH
Q 037713 334 GVKPNEVTFV 343 (610)
Q Consensus 334 g~~p~~~t~~ 343 (610)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44555554
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.58 E-value=19 Score=27.07 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037713 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333 (610)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 333 (610)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444444444444432 22222222344567899999999999999999999988765 4567788888777777666
Q ss_pred CCCCCHHHHH
Q 037713 334 GVKPNEVTFV 343 (610)
Q Consensus 334 g~~p~~~t~~ 343 (610)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 4 44555544
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.33 E-value=85 Score=34.50 Aligned_cols=286 Identities=10% Similarity=0.005 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhCCChHHH-HHHHH-hcC-CCChhhHH-HHHHHHHhcCCHHHHHHHHhhCCCC----Ch--hhHHHHHHH
Q 037713 142 VKSSLVDMYAKCGLPNNA-RAVFD-SIK-LKNSVSWT-AMLSAYARSGRKKDAMEIFEQAPVR----NL--FLWTALVSG 211 (610)
Q Consensus 142 ~~~~li~~~~~~g~~~~A-~~~~~-~m~-~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~ 211 (610)
+..++.+++..+|--.+. .+... .+. ..+-.-+. +.--|....|+.+++..+++..... +. ..-..+.-+
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 344677888888854433 11111 111 11211112 2233456778888999999886642 22 233344556
Q ss_pred HHhCCChHHHHHHHHHHHHcCC--CCC---CHhH--HHHH--HHHHhccccHHHHHHHHHHHHHhCCCCch--hHHHHHH
Q 037713 212 LVQSRNEIDAFYSFIEMRREGV--DIV---DPLV--LSSI--VGACANFAVLELGKQIHGLVIALGYESCL--FISNAIV 280 (610)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~~~--~~p---~~~t--~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 280 (610)
.+..|..+++++++.......- . - +... -.++ .-++...++ +.+...+..+....- +.. ...-+|.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~-~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTS-GDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCC-SCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccc-cccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 7777777788888877665321 0 0 1111 1111 112222333 334444444443221 111 2223444
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhccCC
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR-KD--VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV---GLIYACSHVGL 354 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~ 354 (610)
..|.-.|+-+....++..+.+ .+ +.-.-++.-++...|+.+.+..+.+.+... ..| ..-|. .+.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCC
Confidence 556677887777777766542 22 222333444555789999998888888764 122 22333 34457788899
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCch-hHHHHHHH
Q 037713 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW--AALLSACKHHRNT-EMGTRVAN 431 (610)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~g~~-~~a~~~~~ 431 (610)
.....++++.+.++ ...++.-...+.-++...|+.+.+.++++.+.-..|..+- ..+.-+....|+. ..+...+.
T Consensus 576 ~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 88777798888763 3334444444444444567766667776655212233332 2233333333332 45666666
Q ss_pred HHh
Q 037713 432 HLL 434 (610)
Q Consensus 432 ~~~ 434 (610)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.68 E-value=33 Score=29.40 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=85.1
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~ 114 (610)
.++..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+.. ++...+..+.. .||...-...+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~a 99 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAVA 99 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 455556566666666666655555556666666666666666777776665 44555555543 4577777777788
Q ss_pred HhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 037713 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185 (610)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 185 (610)
+.+.++.+....+ ..+.+ .++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|
T Consensus 100 L~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 100 LGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 8877776444333 33443 5677777778888888777554444444444455444444444444444
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.28 E-value=52 Score=37.49 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------------------------ChhHHHHHHHHHHhcCChHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--------------------------DVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
+....-.+..+|..+|++++|...|.+.... -..-|.-++..+-++|.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333344556677777777777777665320 01124455566666666666666
Q ss_pred HHHHHHHcCCCCCH--H--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 326 LYDEMVSAGVKPNE--V--TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 326 l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
+-+...+....-+. . .|..+.+++...|++++|...+-.+... . --......||..++..|..+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChh
Confidence 65555443211111 1 3555666666666666666666555331 1 12344455555555444433
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.02 E-value=36 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
..-|.-++.+.|+++.|.++.+.+++.+|+|..
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 445666789999999999999999999998853
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.52 E-value=21 Score=28.59 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 148 (610)
+..+-++.+...+ +.|++......+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~D-lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 4555566666666 77888888888888888888888888887665432 333445665543
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.35 E-value=79 Score=30.81 Aligned_cols=288 Identities=10% Similarity=0.029 Sum_probs=135.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC--------ChhhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhhH------
Q 037713 144 SSLVDMYAKCGLPNNARAVFDSIKLK--------NSVSWTAMLSAYARS-GRKKDAMEIFEQAPV---RNLFLW------ 205 (610)
Q Consensus 144 ~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~------ 205 (610)
..|...|.+.|+.++..+++.....- ....-..+++.+... +..+.-.++..+..+ .+-.+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666777776666666655421 223344444444332 222222222222110 011122
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH-----hHHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhHHHH
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP-----LVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNA 278 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 278 (610)
.-++..|...|++.+|++++.++.+.--+ .|. ..+..-+..|...+++.+++..+..+... .+.+++.+...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25677888899999999888888764222 221 22344455566667777777766665443 22222222211
Q ss_pred ----HHHHHH-hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037713 279 ----IVDMYA-KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353 (610)
Q Consensus 279 ----li~~y~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 353 (610)
-.-++. ..+++..|...|-+. ..+|...|.. ++. +...|..|.... . +
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea-----------f~~f~~~~~~-~~~-------------~~lkYlvL~aLl-~-~ 234 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA-----------FEGFDSVDSV-KAL-------------TSLKYMLLCKIM-L-G 234 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH-----------HHHHTTTCHH-HHH-------------HHHHHHHHHHHH-T-T
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH-----------HhcccccccH-HHH-------------HHHHHHHHHHHH-c-C
Confidence 112233 445555555444331 0111111110 000 122333332222 2 2
Q ss_pred CHHHHHHHH-HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHhcCchhHHH
Q 037713 354 LVGKGRKLF-KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTW---AALLSACKHHRNTEMGT 427 (610)
Q Consensus 354 ~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~~~~~~g~~~~a~ 427 (610)
+..+-..++ +.....+ ..|....+..++.+| +.+++.+...+++.. .+..|.... ..|.... -.
T Consensus 235 ~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I--------r~ 304 (394)
T 3txn_A 235 QSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM--------LE 304 (394)
T ss_dssp CGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--------HH
T ss_pred CHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--------HH
Confidence 222222222 1222222 356666677777765 467888777777776 344555432 2222211 12
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
..+.++. .|-.......++..+.- ..++++.....|...|.-
T Consensus 305 ~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 305 QNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 2233333 34444555566655543 457888887777765553
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.24 E-value=59 Score=29.61 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
..+.|..++|++....-++... -|...-..|+.-+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666666666655555422 2444444555666666666666666555543
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.60 E-value=9.2 Score=34.88 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=31.7
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+.+.|.+++|++....- +-.| |...-..|+.-++-.|+++.|.+-++...+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44566666666554433 3233 3444445556666666666666666666666664
No 273
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=63.69 E-value=79 Score=29.61 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 398 IKAMPFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 398 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|...++.|. ..+...-+..+.+.+++..|..+.++++++.|+.. ..++|.++...-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 333366664 34566667779999999999999999999998521 3456777777665443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.50 E-value=41 Score=33.39 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHH--
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR------KDVVSWTSIIVGTAQHGQAEETLALYDEMVS---AGVKPNEVTFV-- 343 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~-- 343 (610)
+...+.+.|.++|+++.|.+.|.++.. .-+..+-..|..+...+++..+...+.+... .+..|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445567777777777777777777653 1234566667777777888888777777643 33333322111
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 370 (610)
.-...+...+++.+|.+.|-+....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111234456788888887777666443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.81 E-value=76 Score=27.45 Aligned_cols=102 Identities=10% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCchhHHHHHHHHHh--cCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 392 DEAENLIKAM-PFEPDEPT---WAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
+++...|... ..+-|..- |-..+..| ..++...+..+|..|. +++..-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444 33445433 33333333 2444668888888887 4566667788899999999999999999998
Q ss_pred HHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCc
Q 037713 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519 (610)
Q Consensus 466 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 519 (610)
.-.+++..| .+.......+...+|.+.++
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCC
Confidence 877665542 23444455566778888777
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.62 E-value=50 Score=29.80 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCChHHHHHHHccCCCCCcc----hHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCCh---hhHHHHHHH
Q 037713 42 NTLIDAYGKCDLVQYAHHLLEEMPQRDHV----SWASILTAYNQANLPQKTISIFSTMLALDKLQPDH---FVFASLVKA 114 (610)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~---~~~~~ll~~ 114 (610)
++.+...++.|+++....+++.-...+.. -++.| ...+..|+.+ +++.+.+.| ..|+. .-.+.+ ..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g-~~~~~~~~~g~t~L-~~ 78 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSRED----IVELLLRHG-ADPVLRKKNGATPF-LL 78 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCHH----HHHHHHHTT-CCTTCCCTTCCCHH-HH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcC-CCCcccCCCCCCHH-HH
Confidence 45666777888888888888765543322 23333 3344556543 444444555 44432 222222 23
Q ss_pred HhccCCcHHHHHHHHHHHhcCCCCChhH--HHHHHHHHHhCCChHHHHHHHHhc
Q 037713 115 CGSLGATRLGKQVHACFVLSPFCDDDVV--KSSLVDMYAKCGLPNNARAVFDSI 166 (610)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m 166 (610)
.+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 33445543 4444555565443221 112334445566666555555543
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.67 E-value=1.9e+02 Score=30.39 Aligned_cols=85 Identities=14% Similarity=0.014 Sum_probs=47.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-
Q 037713 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK- 285 (610)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~- 285 (610)
.....+.-.|+++.|++.+-.. .. .|.+.+.+.+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~-vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SE-MDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CH-HHHHHHHHHHHHTTC------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----Cc-hhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHH
Confidence 3456677789999999987754 22 778888877776544432 11111110 00 11 1225567777765
Q ss_pred --cCCHHHHHHHHHhcCCCC
Q 037713 286 --CSDIIAAKDIFGRMRRKD 303 (610)
Q Consensus 286 --~g~~~~A~~~~~~~~~~~ 303 (610)
..+..+|.+.|--+..++
T Consensus 367 F~~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTTTCHHHHHHHHHGGGGSC
T ss_pred hhcCCHHHHHHHHHHHhccC
Confidence 578888888777764443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.70 E-value=1.1e+02 Score=30.14 Aligned_cols=96 Identities=8% Similarity=-0.025 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH----
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT---- 379 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 379 (610)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+..+++.+...+++..+...+.++.....-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566788899999999999999999987533333 45677888999999999999999998865433333332221
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 037713 380 CLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m 401 (610)
+-...+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2222345678999998887665
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.86 E-value=1.1e+02 Score=26.70 Aligned_cols=85 Identities=12% Similarity=-0.015 Sum_probs=47.7
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhCCCCCCc--hHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCC
Q 037713 9 RLRVCARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQAN 83 (610)
Q Consensus 9 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g 83 (610)
.|...+..|+.+..+.+.+.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..+ |..-++.+.. .+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL-ACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHcC
Confidence 3455566788888888877777777655432 1234455566778887777777654333 2222333333 34455
Q ss_pred CchHHHHHHHH
Q 037713 84 LPQKTISIFST 94 (610)
Q Consensus 84 ~~~~A~~~~~~ 94 (610)
+.+-...+++.
T Consensus 91 ~~~~~~~Ll~~ 101 (241)
T 1k1a_A 91 SPTCLRALLDS 101 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 55544444443
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.29 E-value=87 Score=28.62 Aligned_cols=143 Identities=9% Similarity=-0.076 Sum_probs=61.1
Q ss_pred HHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCCh---hhHHHHHHHHhccC
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDH---FVFASLVKACGSLG 119 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~---~~~~~ll~~~~~~~ 119 (610)
+.+...++.|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.| ..|+. .-.+.+. ..+..|
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g-a~~~~~d~~g~t~L~-~A~~~g 106 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSG-LDDSQFDDKGNTALY-YAVDSG 106 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTT-CCTTCCCTTSCCHHH-HHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCC-CCCCCcCCCCCcHHH-HHHHcC
Confidence 3455556677777777777654333222112223333455555433 3333334 44332 2222232 233445
Q ss_pred CcHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHhCCChHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHh
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVV---KSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFE 195 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 195 (610)
+.+-++ .+++.|..++... +.+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 107 ~~~~v~----~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 107 NMQTVK----LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp CHHHHH----HHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHH----HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 544333 3333343333221 123444445566665555555443322 11122233333345555555544443
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.61 E-value=79 Score=25.93 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc--CCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 392 DEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
+.+...|..- ..+-|..-...-+.--.. .+.+..+|..|.. ++...+..|..-+..+...|++++|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345555444 334454433333322111 2337777877764 445566778888888889999999999888876
Q ss_pred hCCCc
Q 037713 469 VMEVK 473 (610)
Q Consensus 469 ~~~~~ 473 (610)
+++..
T Consensus 129 ~~~A~ 133 (152)
T 4a1g_A 129 QNQAE 133 (152)
T ss_dssp HTTCB
T ss_pred HcCCc
Confidence 66554
No 282
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=52.10 E-value=4.4 Score=24.29 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=10.3
Q ss_pred cccc-cCcccccCCC
Q 037713 596 YHHF-KDGKCSCNDF 609 (610)
Q Consensus 596 ~h~~-~~g~csc~~~ 609 (610)
=|.. ++|.||||-|
T Consensus 15 PHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 15 PHRLNSLGGCRCGKY 29 (42)
T ss_dssp TSCCCTTSSBTTTTB
T ss_pred CceecCCceeccccc
Confidence 3444 6899999976
No 283
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=52.06 E-value=61 Score=28.37 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=27.5
Q ss_pred hhhhhccCChHHHHHHHHHHHHhCCCCCCc--hHHHHHHHhhcCCChHHHHHHHccC
Q 037713 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEEM 64 (610)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m 64 (610)
|...+..|+.+. ...+++.|..++.. ...+.+...++.|+.+-+..+++.-
T Consensus 15 L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 15 LHAAAEAGHVDI----CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCcHHH----HHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 444455566543 34455566544332 1223455556677777777777653
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.45 E-value=1.3e+02 Score=26.92 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=60.9
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhCCCCCCc---hHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcC
Q 037713 9 RLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQA 82 (610)
Q Consensus 9 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~ 82 (610)
.|...++.|+++..+. +++.|..++.. ...+.+...++.|+.+-+..+++.-..+ |..-++.|..+ +..
T Consensus 8 ~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHH
T ss_pred HHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHc
Confidence 4455566777665544 45566554422 2235666777889988888888764433 33334444433 344
Q ss_pred CCchHHHHHHHHhHHCCCCCCCh---hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC
Q 037713 83 NLPQKTISIFSTMLALDKLQPDH---FVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 139 (610)
|+. ++++.+.+.| ..++. .-.+.+.. .+..|+.+ +.+.+++.|..++
T Consensus 83 ~~~----~~v~~Ll~~g-~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 83 GSV----KLLKLFLSKG-ADVNECDFYGFTAFME-AAVYGKVK----ALKFLYKRGANVN 132 (285)
T ss_dssp TCH----HHHHHHHHTT-CCTTCBCTTCCBHHHH-HHHTTCHH----HHHHHHHTTCCTT
T ss_pred CCH----HHHHHHHHcC-CCCCccCcccCCHHHH-HHHhCCHH----HHHHHHHhCCCcc
Confidence 554 3445555555 55432 22233333 33445543 4455556665544
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.97 E-value=51 Score=26.17 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQ--AEETLALYDEMVSAGVKPNE 339 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 339 (610)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4568888989999999999999987663 2344555555555432 35677788888777655433
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.00 E-value=1e+02 Score=28.06 Aligned_cols=174 Identities=10% Similarity=-0.006 Sum_probs=94.8
Q ss_pred hhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCch
Q 037713 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQ 86 (610)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~ 86 (610)
|...+..|+.+.+ ..+++.|..++..-..+.+...++.|+.+-+..+++.-..+ |..-++.|..+ +..|+.+
T Consensus 35 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA-VDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH
T ss_pred HHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH-HHcCCHH
Confidence 4444556666544 44556676655444456677778889999988888764433 33344555444 4556654
Q ss_pred HHHHHHHHhHHCCCCCCCh---hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhCCChHHHHHH
Q 037713 87 KTISIFSTMLALDKLQPDH---FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 162 (610)
-+.-++ +.| ..|+. .-+.+.+...+..|+.+ +.+.+++.|..+... ...+.+...+..|+.+-+.-+
T Consensus 110 ~v~~Ll----~~g-a~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 110 TVKLFV----KKN-WRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHHHH----HHC-GGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH----hcC-CCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 443333 334 44432 22234444455566654 445555666443222 445566677788998877777
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 163 FDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 163 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
++.-.. +|..-++..+...++.|+.+-+.-+++.-
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence 765332 22222232233344556665555555543
No 287
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.40 E-value=83 Score=29.93 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC
Q 037713 144 SSLVDMYAKCGLPNNARAVFDSIKLK 169 (610)
Q Consensus 144 ~~li~~~~~~g~~~~A~~~~~~m~~~ 169 (610)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 45667777777777777777777655
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.73 E-value=2.6e+02 Score=29.08 Aligned_cols=226 Identities=9% Similarity=-0.026 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHH----HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLS----SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 291 (610)
.+++.|...+....+... .+..... .+.......+....+...+....... .+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~--~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ--LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC--CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHH
Confidence 378899999988876442 2332222 22223334442334444444443332 233333344445557799999
Q ss_pred HHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 292 AKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 292 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
|...|..|.... ....-=+..++...|+.++|..+|+.+... . +|-.++. -.+.|..-. . ..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~-------~-~~ 368 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYE-------L-KI 368 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCC-------C-CC
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCC-------C-CC
Confidence 999999998632 111111334667789999999999998742 2 3333332 222222100 0 00
Q ss_pred cCCCC---CH-H--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC---C
Q 037713 369 YGITP---SL-Q--HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP---E 439 (610)
Q Consensus 369 ~~~~~---~~-~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~ 439 (610)
....+ .. . .-..-+..+...|...+|...+....-..+......+.......|..+.+.....+....+. .
T Consensus 369 ~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 448 (618)
T 1qsa_A 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEER 448 (618)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhh
Confidence 00001 00 0 11123455677898888888776662123433333444445667778877766654432220 0
Q ss_pred CCcchHhHHHHhhhhcchhHH
Q 037713 440 DPSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a 460 (610)
-|..|...+.-+++.-.++..
T Consensus 449 ~P~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 449 FPLAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp SCCTTHHHHHHHHTTSSSCHH
T ss_pred CCcchHHHHHHHHHHcCCCHH
Confidence 123455555555544444443
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=46.79 E-value=1.6e+02 Score=26.45 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=8.5
Q ss_pred CCHhHHHHHHHHHhccc
Q 037713 236 VDPLVLSSIVGACANFA 252 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~ 252 (610)
++...-...+.+....+
T Consensus 103 ~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 103 KSACVRATAIESTAQRC 119 (280)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45555555555554443
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.01 E-value=1e+02 Score=25.63 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=36.6
Q ss_pred HHHHHHHHh--cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 426 GTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 426 a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
+..+|..|. +++..-+..|...+..+...|++.+|.++++.-.+++..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 666777776 445556678888888899999999999998887766654
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.93 E-value=1.4e+02 Score=27.93 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCC
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRN---LFLWTALVSGLVQSRN--EIDAFYSFIEMRREGVD 234 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 234 (610)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4567888888899999999999887662 2344445555555433 35567788888877765
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.74 E-value=1.3e+02 Score=24.56 Aligned_cols=54 Identities=9% Similarity=-0.071 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHH
Q 037713 124 GKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177 (610)
Q Consensus 124 a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 177 (610)
...+|..|...|+-.. ...|......+-..|++.+|.++|+.-.+.+......|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 5556666665554333 33445555555556666666666655544444433333
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.51 E-value=1.4e+02 Score=24.32 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCC
Q 037713 176 AMLSAYARSGRKKDAMEIFEQAPVRN---LFLWTALVSGLVQSRN--EIDAFYSFIEMRREGVD 234 (610)
Q Consensus 176 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 234 (610)
.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...++-
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34444555555555555555544331 1223333334443222 33455556666555543
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.42 E-value=50 Score=27.16 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQ--AEETLALYDEMVSAGVKPN 338 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 338 (610)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4668888888999999999999987663 2344555555555332 3456777777777665433
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.88 E-value=1.7e+02 Score=25.10 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=28.4
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCCc--hHHHHHHHhhcCCChHHHHHHHccCCC
Q 037713 11 RVCARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66 (610)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~ 66 (610)
...+..|+++..+. +++.|..++.. ...+.+...++.|+++-+.-+++.-..
T Consensus 14 ~~A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 14 VKATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 33445566554443 44455544322 223455666777787777777766543
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.85 E-value=86 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (610)
.++...-...+..+.+.|+.++|.++|=+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34455555666777788888888877644
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.06 E-value=1.9e+02 Score=24.82 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc-----HHHHHHHHHHHHHhCCC
Q 037713 206 TALVSGLV---QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-----LELGKQIHGLVIALGYE 270 (610)
Q Consensus 206 ~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 270 (610)
--+|+++. +-.+++.|+-++-+|.+.| . |....-..++.+.-..|. +..+...++.....|.+
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-D-p~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-D-LASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C-HHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34555554 4588999999999999999 6 777777777777665553 34444555555555544
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.98 E-value=1.5e+02 Score=23.41 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCC
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAPVRN---LFLWTALVSGLVQSRN--EIDAFYSFIEMRREGVD 234 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 234 (610)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 344555555555556665555554441 1233334444444332 34455666666665554
No 299
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.88 E-value=3.1e+02 Score=27.07 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=82.3
Q ss_pred CCHHHHHHHHhhCC-----CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHH----hcc
Q 037713 185 GRKKDAMEIFEQAP-----VRN----LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC----ANF 251 (610)
Q Consensus 185 g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~----~~~ 251 (610)
|++++|.+.+-.+. ..| ......++..+...|+++...+.+..+....-+.+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 66777776654332 122 2346677788888888888877776665443221222 22333322 222
Q ss_pred ccHHHHHHHHHHHHHh------C-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-C----hhHHHHHHH
Q 037713 252 AVLELGKQIHGLVIAL------G-YES---CLFISNAIVDMYAKCSDIIAAKDIFGRMRR----K-D----VVSWTSIIV 312 (610)
Q Consensus 252 ~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~ 312 (610)
...+.... ...... | +-. ...+...|...|...|++.+|.+++..+.. . + +..+..-+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22221111 111111 1 101 123446678888888999999888888752 1 1 345666777
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~ 331 (610)
.|...+++.+|..++++..
T Consensus 186 l~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888764
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.86 E-value=1.3e+02 Score=25.88 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=49.5
Q ss_pred HHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhh---HHHHHHHHhcc
Q 037713 45 IDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV---FASLVKACGSL 118 (610)
Q Consensus 45 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~---~~~ll~~~~~~ 118 (610)
+...++.|+++....+++.-..+ +..-++. +...++.|+.+ +++.+.+.| ..++... -.+.+...+..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~~-~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTL-LHWAAINNRID----LVKYYISKG-AIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTT-CCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCH-HHHHHHhCCHH----HHHHHHHcC-CcchhhcCCcCCChhHHHHHc
Confidence 33456778888888887754332 2222233 33445556654 334444444 3332111 11223333344
Q ss_pred CCcHHHHHHHHHHHhcCCCCChhH--HHHHHHHHHhCCChHHHHHHHH
Q 037713 119 GATRLGKQVHACFVLSPFCDDDVV--KSSLVDMYAKCGLPNNARAVFD 164 (610)
Q Consensus 119 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 164 (610)
|+.+ +.+.+++.|..++... ....+...+..|+.+-+..+++
T Consensus 87 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 87 GHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 5544 3444445554443221 1123334445555554444444
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.58 E-value=37 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=15.9
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 037713 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 218 (610)
+.+.|.++++.++.++..+|..++.++...|+.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcH
Confidence 344455555555555445555555555443433
No 302
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=37.40 E-value=19 Score=24.04 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=19.8
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChh
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHF 106 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~ 106 (610)
.-+++.|+..|.++...|.++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3478999999999988776777664
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.69 E-value=1.2e+02 Score=27.06 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHcCCCchHHHHHHHHhHH--CCCCCC----ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037713 75 ILTAYNQANLPQKTISIFSTMLA--LDKLQP----DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148 (610)
Q Consensus 75 li~~~~~~g~~~~A~~~~~~m~~--~~~~~p----d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 148 (610)
-+..+....++++|++++++..+ .+ .++ +.......++.-.....-..+..+...+.. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~-~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLED-LSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-TC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh-CcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 45677778888888888876543 11 221 112223333333333333344444444422 334444455556
Q ss_pred HHHhCCChHHHHHHHH
Q 037713 149 MYAKCGLPNNARAVFD 164 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~ 164 (610)
.+.+.|+.++|.++|-
T Consensus 100 ~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHH
Confidence 6677777777777664
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.80 E-value=3.1e+02 Score=26.52 Aligned_cols=330 Identities=11% Similarity=0.032 Sum_probs=164.6
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhCCCCCCc--hHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCC
Q 037713 9 RLRVCARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQAN 83 (610)
Q Consensus 9 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g 83 (610)
.|...+..|+++.++. +++.|..++.. ...+.+...++.|+.+-+.-+++.-... +..-++.|..+ ++.|
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA-ARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH-HHHT
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH-HHCC
Confidence 3555566788765554 45567665532 2335566677889999988888764432 33334444433 4556
Q ss_pred CchHHHHHHHHhHHCCCCCCCh---hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh--HHHHHHHHHHhCCChHH
Q 037713 84 LPQKTISIFSTMLALDKLQPDH---FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV--VKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~ 158 (610)
+.+- ++.+.+.| ..|+. .-.+. +...+..|+.+....++ +.+..++.. ...+.+...++.|+.+-
T Consensus 92 ~~~~----v~~Ll~~g-a~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 92 HTNM----VKLLLENN-ANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp CHHH----HHHHHHHT-CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHH----HHHHHhCC-CCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 6543 33444445 44432 22223 33444567766555444 444332211 11234555677888888
Q ss_pred HHHHHHhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 159 ARAVFDSIKLKNS---VSWTAMLSAYARSGRKKDAMEIFEQAPVRNL---FLWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 159 A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+..+++.-..++. ... +.+...+..|+.+-..-+++.-..++. ..++.+ ...+..|+.+-+. .+.+.|
T Consensus 162 v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g 235 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGL-TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVAR----SLLQYG 235 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCC-CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHH----HHHHTT
T ss_pred HHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHH----HHHHcC
Confidence 8877776543321 222 234445677888877777776543322 223333 3345566654443 344444
Q ss_pred CC--CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh
Q 037713 233 VD--IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF--ISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVV 305 (610)
Q Consensus 233 ~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 305 (610)
.. ..+....+. +...+..|..+..+.++ +.|..++.. ...+.+...++.|+.+-+..+++.-.. +|..
T Consensus 236 ~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 236 GSANAESVQGVTP-LHLAAQEGHAEMVALLL----SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp CCTTCCCTTCCCH-HHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred CCCCCCCCCCCCH-HHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 32 012122222 33334556665554443 444433221 112234445567888877777765332 2222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV---TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (610)
-++.|. ..+..|+.+ +.+.+.+.|..++.. ..+.|-. .+..|..+-...+ .+ +|..|+.
T Consensus 311 g~t~L~-~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~iv~~L----l~-~ga~~~~ 372 (437)
T 1n11_A 311 GYTPLH-VASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTDIVTLL----LK-NGASPNE 372 (437)
T ss_dssp CCCHHH-HHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHH----HH-TTCCSCC
T ss_pred CCCHHH-HHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChHHHHHHH----HH-CcCCCCC
Confidence 233333 334567764 334445556555432 2233333 3445666544333 33 3666654
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.76 E-value=1.1e+02 Score=30.84 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HH-HHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QH-YTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
...++.+++-|.+.+.+++|..+..+..--..-.++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4557777888888888888888877652100001111 11 223455566778888887777664
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.11 E-value=3.7e+02 Score=27.16 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hH------H-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV-VS------W-TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV---- 340 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~------~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 340 (610)
..++|.++..|...+.++.|..+..+..-|.. .+ | --+...++-.+++.+|.+.|......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 46788889999999999999999998865522 11 1 123455667899999999888876542 22211
Q ss_pred ---H--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037713 341 ---T--FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415 (610)
Q Consensus 341 ---t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 415 (610)
. |..++..+ .|.+.+ ..+|. .++.......|..|+.++ +.|++++-...++.-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 22222222 244332 11111 112222244577777776 6688777666555431 1
Q ss_pred HHHhcCchhHHHHHHHHHh-----cCCCCCCcchHhHHHHhhhhc--chhHHHHHHHHHhhCCCc
Q 037713 416 ACKHHRNTEMGTRVANHLL-----SLKPEDPSSYILLSNVYASAA--MWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~ 473 (610)
.+.+.|.+....++-..+. .+... ..-..+.++..+.+ ..++|+.+...|...|..
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~--YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLT--YKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCC--SSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 1334444444443322221 22221 12234455555544 246788888888766654
No 307
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.10 E-value=3e+02 Score=26.20 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCC
Q 037713 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRN---LFLWTALVSGLVQSRN--EIDAFYSFIEMRREGVD 234 (610)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 234 (610)
..+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 35677888888999999999999887663 2344555555555433 35577788888877765
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.00 E-value=1.4e+02 Score=25.82 Aligned_cols=20 Identities=0% Similarity=-0.227 Sum_probs=9.2
Q ss_pred HcCCCchHHHHHHHHhHHCC
Q 037713 80 NQANLPQKTISIFSTMLALD 99 (610)
Q Consensus 80 ~~~g~~~~A~~~~~~m~~~~ 99 (610)
++.|+.+....+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455554444444444433
No 309
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.31 E-value=1.6e+02 Score=27.51 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 398 IKAMPFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 398 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|...++.|. ..+...-+..+.+++++..|..+.++++++.|+. ...++|.++...-.+.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP--------------EVAQQTRKILSACEKNPT 249 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH--------------HHHHHHHHHHHHHHHSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCCC
Confidence 334466664 3455666777999999999999999999998752 123567777776655443
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.29 E-value=3.6e+02 Score=29.87 Aligned_cols=85 Identities=7% Similarity=-0.148 Sum_probs=53.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC----------------
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPD---------------- 406 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 406 (610)
++..|...|.++-+.++.. -.+.++..--.+..+|...|++++|.+.|++. ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 6677777888777665432 23334433345677788999999999999887 32111
Q ss_pred -------HHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 407 -------EPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 407 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
..-|..++.-+-+++-++.+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11345555556667777777777776664
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.41 E-value=3.1e+02 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 037713 143 KSSLVDMYAKCGLPNNARAVFDSIKLKN 170 (610)
Q Consensus 143 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 170 (610)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3566777777788888888887776553
No 312
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=32.16 E-value=17 Score=24.91 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=18.3
Q ss_pred eeEEEeCCCccccccCcccccC
Q 037713 586 REIVVRDATRYHHFKDGKCSCN 607 (610)
Q Consensus 586 ~~~~~~d~~~~h~~~~g~csc~ 607 (610)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999997643
No 313
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.71 E-value=2e+02 Score=27.89 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=9.7
Q ss_pred HHHHHhCCChHHHHHHHHh
Q 037713 147 VDMYAKCGLPNNARAVFDS 165 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~ 165 (610)
+...++.|+.+-+.-+++.
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC
Confidence 3344455665555555544
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.40 E-value=2e+02 Score=24.68 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 207 ALVSGLV---QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 207 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
-+|+++. +-.+++.|+-++-+|++.|.. |....-..++-+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GED-p~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGD-PLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhhcc
Confidence 3555554 458899999999999999965 65555555555554444
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.39 E-value=2.2e+02 Score=24.37 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 391 LDEAENLIKAMPFEPDEP--TWA-----ALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 391 ~~~A~~~~~~m~~~p~~~--~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
++.|+.+++.+.-.-|.. .-. ..+..|.+.|.+++|.+++++..+.++++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCch
Confidence 566777777773332211 111 223448899999999999999887766553
No 316
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=29.28 E-value=16 Score=29.19 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.2
Q ss_pred CCcEEEE----ccccccCcchHHHHHHhhhcCeeEEEeCCCccccccCccccc
Q 037713 558 GTVLRVV----KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606 (610)
Q Consensus 558 ~~~~~~~----~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc 606 (610)
...+||+ +..++|.+| .+...-..-.++-+||+|+++.|-.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~~ 88 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQVY 88 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCEE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEEE
Confidence 4566777 357888887 4555556667999999999998753
No 317
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.08 E-value=74 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 153 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
....+.|.++++.++.++..++..++.++.+.+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 34445555555555555555555555555444443
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.67 E-value=75 Score=23.65 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH
Q 037713 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 287 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 324 (610)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767665444
No 319
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.40 E-value=3.2e+02 Score=24.39 Aligned_cols=174 Identities=9% Similarity=-0.072 Sum_probs=72.8
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchH----HHHHHHHhHHCCCCCCChhhHHHHH
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQK----TISIFSTMLALDKLQPDHFVFASLV 112 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~pd~~~~~~ll 112 (610)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|.... .+.++..+... .+|...-...+
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~vr~~a~ 112 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACVRATAI 112 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 433333444444444543333333333444554444445555555553322 22233322111 24555545555
Q ss_pred HHHhccCC-----cHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcC--
Q 037713 113 KACGSLGA-----TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG-- 185 (610)
Q Consensus 113 ~~~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-- 185 (610)
.++...+. ...+...+..+.+ .++..+-...+.+..+.|+.+..-.+.+.+..++...-...+.++.+.|
T Consensus 113 ~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 189 (280)
T 1oyz_A 113 ESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189 (280)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC
Confidence 55544331 1222233222222 4566666666666666665443333334444455444444444444443
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 037713 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 216 (610)
..+....+...+..++...-...+.++.+.|
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 2222223333333444444344444444444
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.09 E-value=2.4e+02 Score=23.42 Aligned_cols=18 Identities=6% Similarity=0.069 Sum_probs=10.6
Q ss_pred hhcCCChHHHHHHHccCC
Q 037713 48 YGKCDLVQYAHHLLEEMP 65 (610)
Q Consensus 48 ~~~~g~~~~A~~~f~~m~ 65 (610)
.+..|+.+....+++.-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345666666666665443
No 321
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.01 E-value=1.7e+02 Score=25.22 Aligned_cols=14 Identities=7% Similarity=0.200 Sum_probs=6.4
Q ss_pred hcCCHHHHHHHHhh
Q 037713 183 RSGRKKDAMEIFEQ 196 (610)
Q Consensus 183 ~~g~~~~A~~~~~~ 196 (610)
..|+.+-...+++.
T Consensus 86 ~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 86 KKGHYEVVQYLLSN 99 (237)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HcCCHHHHHHHHhC
Confidence 34444444444443
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.90 E-value=1.4e+02 Score=26.18 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh--cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 391 LDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 391 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
++++...|..- ..+-|..-...-+..-... +....+|..|. +++..-+..|...+..+...|++.+|.++++.-
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYI---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHcc---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred hhCCCcc
Q 037713 468 SVMEVKK 474 (610)
Q Consensus 468 ~~~~~~~ 474 (610)
.+++..|
T Consensus 177 i~~~A~P 183 (223)
T 4aez_C 177 KRMKAKP 183 (223)
T ss_dssp HHHTCBS
T ss_pred HHcCCcc
No 323
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.48 E-value=44 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHHHHHHCCcccCCccc
Q 037713 498 PLKDEIFELLTELDAEMKRRGYVPDTSSV 526 (610)
Q Consensus 498 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~ 526 (610)
+...++++.+++-..+++..|+.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 35567888888888999999999998653
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.36 E-value=2.4e+02 Score=24.80 Aligned_cols=51 Identities=16% Similarity=-0.030 Sum_probs=25.1
Q ss_pred HcCCCchHHHHHHHHhHHCCCCCCChh-------hHHHHHHHHh--ccCCcHHHHHHHHHH
Q 037713 80 NQANLPQKTISIFSTMLALDKLQPDHF-------VFASLVKACG--SLGATRLGKQVHACF 131 (610)
Q Consensus 80 ~~~g~~~~A~~~~~~m~~~~~~~pd~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 131 (610)
++.|+.+....+++.+.+.| ..++.. -.+.|..++. +.|+.+-++.+++.-
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 45566666666666555554 444322 2233333332 456666555555543
No 325
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.53 E-value=17 Score=22.02 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=8.7
Q ss_pred cccccCcchH
Q 037713 566 NLRVCGDCHI 575 (610)
Q Consensus 566 ~l~~~~~~~~ 575 (610)
+.|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 7899999984
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.49 E-value=2.4e+02 Score=24.62 Aligned_cols=47 Identities=6% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHhcCCCCCH-H-----HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 355 VGKGRKLFKSMIEDYGITPSL-Q-----HYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~-~-----~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
++.|..+|+.+.+...+..+. . .--..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455666666665543221111 0 1112344567788888888888776
No 327
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.98 E-value=4.2e+02 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=22.9
Q ss_pred HHHHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCC
Q 037713 375 LQHYTCLLDL-----LSRSGHLDEAENLIKAMPFEPD 406 (610)
Q Consensus 375 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 406 (610)
..++..|.+. +...|++++|++.+++.++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455555443 3678999999999999977774
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.82 E-value=50 Score=29.54 Aligned_cols=84 Identities=13% Similarity=-0.002 Sum_probs=49.5
Q ss_pred HHhccCCcHHHHHHHHHHHhcCCCCChhH-------HHHHHHHHH--hCCChHHHHHHHHhcCCC--------------C
Q 037713 114 ACGSLGATRLGKQVHACFVLSPFCDDDVV-------KSSLVDMYA--KCGLPNNARAVFDSIKLK--------------N 170 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~m~~~--------------~ 170 (610)
..++.|+.+..+.+++.+.+.|...+... .+.|..+.. +.|+.+-+..+++.-..+ |
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34466889988888888888776655332 234433332 668888777777653211 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 171 SVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
..-++ .+...+..|+.+-+.-+++.-.
T Consensus 91 ~~g~t-~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 91 YRGQT-ALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp EESBC-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCC-HHHHHHHcCCHHHHHHHHhCCC
Confidence 12222 2333455677777777776543
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.64 E-value=3.4e+02 Score=23.49 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=42.5
Q ss_pred hhHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc-----HHHHHHHHHHHHHhCCC
Q 037713 203 FLWTALVSGLV---QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-----LELGKQIHGLVIALGYE 270 (610)
Q Consensus 203 ~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 270 (610)
...--+|+++. +-.+++.|+-++-+|++.|.. |....-..++-+.-..|. +..+...++.....|.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GED-p~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGED-PNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445666664 458899999999999999965 666665666666554443 34444555555555543
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.49 E-value=3.2e+02 Score=25.63 Aligned_cols=14 Identities=0% Similarity=0.010 Sum_probs=7.0
Q ss_pred hcCCHHHHHHHHhh
Q 037713 183 RSGRKKDAMEIFEQ 196 (610)
Q Consensus 183 ~~g~~~~A~~~~~~ 196 (610)
..|+.+-+..+++.
T Consensus 182 ~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 182 EFRNREALDLMMDT 195 (364)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhc
Confidence 44555555555543
No 331
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.02 E-value=1.9e+02 Score=23.22 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEE
Confidence 346678888776544 3455555566677888899888765 555566676777788888888643
No 332
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.48 E-value=4.8e+02 Score=24.79 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQ--AEETLALYDEMVSAGVKPNE 339 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 339 (610)
..+.++.-|...|+.++|.+.++++..|. .....++..++-+.++ .+...+++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 35778888888899999999999888763 2344455555554333 34577777777777665444
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.40 E-value=3.7e+02 Score=25.26 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCC
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNL---FLWTALVSGLVQSR-NEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~ 234 (610)
...++.-|...|+.++|.+.++++..|.- +....+..++-+.. ..+.+..++..+.+.++-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 45688889999999999999999987642 22333333333222 234556677777766654
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.22 E-value=2.6e+02 Score=22.57 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=41.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-+.+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEEE
Confidence 346677877665433 3555566666677888888888775 555666666667788888887643
No 335
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.01 E-value=2.8e+02 Score=24.58 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=7.6
Q ss_pred HhcCCHHHHHHHHh
Q 037713 182 ARSGRKKDAMEIFE 195 (610)
Q Consensus 182 ~~~g~~~~A~~~~~ 195 (610)
+..|+.+-+.-+++
T Consensus 156 ~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 156 ACTNQLAIVKFLLQ 169 (273)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 44555555555555
No 336
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.88 E-value=6e+02 Score=25.67 Aligned_cols=68 Identities=7% Similarity=-0.054 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHH----HHHHh-cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 404 EPDEPTWAALLSACKHHRNTEMGTRV----ANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
.+|......|-.-+..+|..++-+++ ++.-+ +..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34555555555556666654433221 11111 2345555666778888889999999999888887663
No 337
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.20 E-value=54 Score=29.30 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=11.9
Q ss_pred HHcCCCchHHHHHHHHhHHCC
Q 037713 79 YNQANLPQKTISIFSTMLALD 99 (610)
Q Consensus 79 ~~~~g~~~~A~~~~~~m~~~~ 99 (610)
.++.|+.+....+++.+...|
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 345566665555666555555
No 338
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.12 E-value=3.8e+02 Score=23.07 Aligned_cols=58 Identities=16% Similarity=0.041 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 037713 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272 (610)
Q Consensus 215 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (610)
.+...++.++|..|...|+-.--+..|..-...+-..|++.+|.+++..-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3345577777777777766534555566666666666777777777776666665553
No 339
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.01 E-value=2.3e+02 Score=22.71 Aligned_cols=39 Identities=8% Similarity=-0.080 Sum_probs=18.3
Q ss_pred cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 037713 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156 (610)
Q Consensus 118 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 156 (610)
.+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 333444555555555544334444433444555555543
No 340
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.89 E-value=2.6e+02 Score=22.27 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=11.2
Q ss_pred HHHhhcCCChHHHHHHHcc
Q 037713 45 IDAYGKCDLVQYAHHLLEE 63 (610)
Q Consensus 45 i~~~~~~g~~~~A~~~f~~ 63 (610)
+...++.|+.+....+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344556677666666653
No 341
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.74 E-value=1.3e+02 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=7.9
Q ss_pred hcCCChHHHHHHHcc
Q 037713 49 GKCDLVQYAHHLLEE 63 (610)
Q Consensus 49 ~~~g~~~~A~~~f~~ 63 (610)
+..|+.+-+..+++.
T Consensus 43 ~~~~~~~~v~~Ll~~ 57 (156)
T 1bd8_A 43 MMFGSTAIALELLKQ 57 (156)
T ss_dssp SCTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 455555555555544
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.01 E-value=3.3e+02 Score=22.48 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=39.2
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCCc--hHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchH
Q 037713 13 CARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQK 87 (610)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~ 87 (610)
.+..|+.+..+.++. +.+..++.. ...+.+...++.|+.+-+..+++.-..+ |...++.+..+ +..|+.+-
T Consensus 12 A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~ 87 (201)
T 3hra_A 12 AANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA-GAQGRTEI 87 (201)
T ss_dssp HHHTTCHHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHH
T ss_pred HHHhccHHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHH
Confidence 345567666655543 222222221 1234555667788888888888764433 33334444433 45566554
Q ss_pred HHHHH
Q 037713 88 TISIF 92 (610)
Q Consensus 88 A~~~~ 92 (610)
+..++
T Consensus 88 ~~~Ll 92 (201)
T 3hra_A 88 LAYML 92 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
Done!