BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037716
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/294 (61%), Positives = 222/294 (75%), Gaps = 1/294 (0%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F+ YM+RKA+ VNKAL+ AV ++ P+KIH++MRYSLLAGGKRVRP+LCIA+CELVGGD
Sbjct: 2 FDFDGYMLRKAKSVNKALEAAVQMKEPLKIHESMRYSLLAGGKRVRPMLCIAACELVGGD 61
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
ES AMPAACA+EMIHTMSL+HDDLP +DND+ RR KP +H FGES A+LAGDALLS A
Sbjct: 62 ESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAF 121
Query: 182 EHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG-KDVSLKELEYIHVHKT 240
EHVA G P+R+VR + E+ ++G EGLVAG+ VD+ SEG +V L LE+IH HKT
Sbjct: 122 EHVAAATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKT 181
Query: 241 AKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300
A LL+ EV ++R +A CIGLLFQVVDDILDVTKSS+ELGKTAGKDL
Sbjct: 182 AALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDL 241
Query: 301 ASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
+ K TYPKL+G+E +K FA L +A E+L +F +AAPL LANYIA R N
Sbjct: 242 VADKTTYPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYIAYRDN 295
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/292 (59%), Positives = 212/292 (72%), Gaps = 18/292 (6%)
Query: 67 YMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAM 126
Y+IRKA+ VNKALD AV L+ P+KIH+A RYSLLAGGKRVRP+LCIA+CELVGG+ES A
Sbjct: 16 YIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAX 75
Query: 127 PAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAV 186
PAACA+E IHT SLIHDDLP DND+ RR KP +H+V+GE A+LAGDALLS A EH+A
Sbjct: 76 PAACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLAS 135
Query: 187 NIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD---VSLKELEYIHVHKTAK 242
+ VSP RVVRA+ E+ A+G EGLVAG+ VDI+SEG D V L+ L++IH+HKTA
Sbjct: 136 ATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAA 195
Query: 243 LLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302
LLE E+ER+R +ARCIGLLFQVVDDILDVTKSS
Sbjct: 196 LLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS------------- 242
Query: 303 GKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
K TYPKL G+E ++ FA +L +A ++L F++ K APL LANYIA+RQN
Sbjct: 243 -KLTYPKLXGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/289 (56%), Positives = 199/289 (68%), Gaps = 37/289 (12%)
Query: 67 YMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAM 126
Y+IRKA+ VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG+ES AM
Sbjct: 16 YIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAM 75
Query: 127 PAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAV 186
PAACA+EMIHTMSLIHDD V+GE A+LAGDALLS A EH+A
Sbjct: 76 PAACAVEMIHTMSLIHDD------------------VYGEDVAVLAGDALLSFAFEHLAS 117
Query: 187 NIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLE 245
+ VSP RVVRA+ E+ A+G EGLVAG+ VDI+ +V L+ L++IH+HKTA LLE
Sbjct: 118 ATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDIS----NVGLEHLKFIHLHKTAALLE 173
Query: 246 XXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKA 305
E+ER+R +ARCIGLLFQVVDDILDVT + K
Sbjct: 174 ASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTIAD--------------KL 219
Query: 306 TYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
TYPKLMG+E ++ FA +L +A ++L F++ K APL LANYIA+RQN
Sbjct: 220 TYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 268
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/269 (46%), Positives = 166/269 (61%), Gaps = 3/269 (1%)
Query: 87 PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLP 146
P ++H AMRYSL GGKR+RP+L AS +LVG S +A ALE IH SLIHDDLP
Sbjct: 29 PANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLIHDDLP 88
Query: 147 FLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSA 206
+DNDE RR KP H F E+TAILAGDAL + A E ++ N P+ ++ I E+ A
Sbjct: 89 AMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLS-NPTSAQPELAIKLIQELVVA 147
Query: 207 MGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIE-VERV 265
G G++ G+ +D++SE K++SL ELE +HVHKT L++ E + ++
Sbjct: 148 SGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKL 207
Query: 266 RNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLG 325
YA IGL FQV DDI+D+T +E LGKT D + KATYPKL+G++ AK+ L
Sbjct: 208 DAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHE 267
Query: 326 QAIEELAYFEASKAAPLYFLANYIASRQN 354
QAI +++ F K+ PL LANYI R +
Sbjct: 268 QAIAQISEF-GDKSQPLTDLANYIIDRNH 295
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 170/299 (56%), Gaps = 5/299 (1%)
Query: 60 PTFPFEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
P ++M E+V +ALD + + P ++H+AMRYS+L GGKR+RPLL A+ +
Sbjct: 5 PERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQT 64
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
+G ACA+E IH SLIHDDLP +D+D+ RR KP H+ + E+TAILAGD L
Sbjct: 65 IGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQ 124
Query: 178 SLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIH 236
+LA +A + + V + + I + A G G+V G+ +D+AS GK + L LE +H
Sbjct: 125 ALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMH 184
Query: 237 VHKTAKLLEXXXXXXXXXXXXXXIE-VERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
+ KT L+ E +R+ +YA+CIGL FQ+ DDILD ++ LGKT
Sbjct: 185 IRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKT 244
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
GKD K YP L+G+ AK A E+ A+E LA F +A L LA +I RQ+
Sbjct: 245 RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGF-GPEADLLRELARFIIQRQS 302
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 156/264 (59%), Gaps = 3/264 (1%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDN 150
++ +M YS+ GGKR+RP+L + S + D + A A+EMIHT SLIHDDLP +DN
Sbjct: 62 LYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDN 121
Query: 151 DERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVE 210
D+ RR KP +H+VFGE+ A+LAGDALL+ A++ + V+ + ++A + A G +
Sbjct: 122 DDLRRGKPTNHKVFGEAIAVLAGDALLNEAMK-ILVDYSLEEGKSALKATKIIADAAGSD 180
Query: 211 GLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYA 269
G++ G+ VDI +E K ++SLKEL+Y+H+ KT +L++ +++++ +
Sbjct: 181 GMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFG 240
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
+GL FQ+ DDILDV ++++LGK KD S K Y + G+E K + + IE
Sbjct: 241 YKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIE 300
Query: 330 ELAYFEASKAAPLYFLANYIASRQ 353
L+ + + PL L + R+
Sbjct: 301 ILSSIKGN-TEPLKVLTMKLLERK 323
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 159/268 (59%), Gaps = 3/268 (1%)
Query: 89 VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFL 148
++++A RYS+ GGKRVRPLL A+CE +GG A AACA+E+IH SL+HDDLP
Sbjct: 37 ARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAX 96
Query: 149 DNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIAGVSPDRVVRAIAEMCSAM 207
D+D+ RR +P +H+ F E+ AILAGD L SLA + ++ S + +R + + A
Sbjct: 97 DDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAA 156
Query: 208 GVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXI-EVERVR 266
G G V G+ +D+ S G + + LEY H HKT L+E E++ ++
Sbjct: 157 GPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQ 216
Query: 267 NYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQ 326
YA+ IGL FQV DDILDV + LGK G D+A K TYP L+G+ AK +A EL Q
Sbjct: 217 TYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQ 276
Query: 327 AIEELAYFEASKAAPLYFLANYIASRQN 354
A+ L F+A+ A PL LA YI R++
Sbjct: 277 ALHALRPFDAA-AEPLRELARYIVERRS 303
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 159/268 (59%), Gaps = 3/268 (1%)
Query: 89 VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFL 148
++++A RYS+ GGKRVRPLL A+CE +GG A AACA+E+IH SL+HDDLP
Sbjct: 30 ARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAX 89
Query: 149 DNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIAGVSPDRVVRAIAEMCSAM 207
D+D+ RR +P +H+ F E+ AILAGD L SLA + ++ S + +R + + A
Sbjct: 90 DDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAA 149
Query: 208 GVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXI-EVERVR 266
G G V G+ +D+ S G + + LEY H HKT L+E E++ ++
Sbjct: 150 GPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQ 209
Query: 267 NYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQ 326
YA+ IGL FQV DDILDV + LGK G D+A K TYP L+G+ AK +A EL Q
Sbjct: 210 TYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQ 269
Query: 327 AIEELAYFEASKAAPLYFLANYIASRQN 354
A+ L F+A+ A PL LA YI R++
Sbjct: 270 ALHALRPFDAA-AEPLRELARYIVERRS 296
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 159/282 (56%), Gaps = 14/282 (4%)
Query: 59 LPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELV 118
+ P + + +++ A++++V+ ++ ++M YSL AGGKR+RP+L + + + +
Sbjct: 1 MTNLPMNKLIDEVNNELSVAINKSVM---DTQLEESMLYSLNAGGKRIRPVLLLLTLDSL 57
Query: 119 GGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLS 178
+ M +A ALEMIHT SLIHDDLP +DND+ RR K +H+V+GE TAILAGDALL+
Sbjct: 58 NTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLT 117
Query: 179 LALEHVAVNIAGVSPDRV-----VRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELE 233
A E ++ S DR+ ++ + + A G G+V G+ +D+ SEG+ + L+ LE
Sbjct: 118 KAFELIS------SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLE 171
Query: 234 YIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELG 293
IH KT LL E + +Y+ +G++FQ+ DD+LD +LG
Sbjct: 172 MIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLG 231
Query: 294 KTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE 335
K G DL + K+TY L+G + A+ A++EL +
Sbjct: 232 KKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 143/256 (55%), Gaps = 4/256 (1%)
Query: 67 YMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAM 126
Y R +Q+++ L+ P+ +AMRY LL GGKR RP L + +++G + S
Sbjct: 16 YQQRNNQQLDQWLNRIPFQTLPLI--EAMRYGLLLGGKRARPYLVYITGQMLGCELSDLD 73
Query: 127 PAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAV 186
A A+E IH SLIHDDLP +D+DE RR KP H F E+TAIL GDAL +LA +A
Sbjct: 74 TPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAE 133
Query: 187 -NIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLE 245
+++ + V + + A G +G+ G+ +D+A+E + +SL+ELE IH +KT L+
Sbjct: 134 GDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMR 193
Query: 246 -XXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGK 304
+ + YA +GL FQV DDILD+ +E LGK G D K
Sbjct: 194 CAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNK 253
Query: 305 ATYPKLMGIENAKSFA 320
+TYP L+G+E A+ A
Sbjct: 254 STYPALLGLEGAQQKA 269
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 167/312 (53%), Gaps = 13/312 (4%)
Query: 48 QNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKR 105
+N F+S + P + + +Q N+AL + P + + M+Y L GGKR
Sbjct: 16 ENLYFQSNAMDFP-----QQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKR 70
Query: 106 VRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFG 165
+RP L A+ + G + A A+E IH SLIHDDLP +D+D+ RR P H FG
Sbjct: 71 LRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFG 130
Query: 166 ESTAILAGDALLSLALEHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG 224
E+ AILAGDAL +LA ++ N+ VS + I+E+ SA G+ G+ G+ +D+ +EG
Sbjct: 131 EANAILAGDALQTLAFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG 190
Query: 225 KDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRN-YARCIGLLFQVVDDIL 283
K V L LE IH HKT L+ V + YA IGL FQV DDIL
Sbjct: 191 KHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDIL 250
Query: 284 DVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLG---QAIEELAYFEASKAA 340
DV + LGK G D GK+TYP L+G+E A+ A +L+ QA+++LA ++ +
Sbjct: 251 DVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQALKQLAE-QSLDTS 309
Query: 341 PLYFLANYIASR 352
L LA+YI R
Sbjct: 310 ALEALADYIIQR 321
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 163/294 (55%), Gaps = 6/294 (2%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
++Y R + + L+E ++ P +I A+ Y+L +GGKR+RP+L + +L+ D+
Sbjct: 13 IDKYTQRHELYLEQLLNEIII--PAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQG 70
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
A ALE+ H SLIHDDLP +DND+ RR KP+ H+ F E+TAIL GD + +LA+E
Sbjct: 71 VLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEV 130
Query: 184 VAVNIAGVSPDRVVRAIAE-MCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTA 241
+ + ++ + P V AI + + +A G+ G+V+G+ +D++ K V+ ++L IH+ KT
Sbjct: 131 LLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTG 190
Query: 242 KLLEXXXXXXXXXXXXXXIEVER-VRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300
KL+ +++ +R Y + IGL+FQ+ DD LD+ ++ LGK D
Sbjct: 191 KLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQ 250
Query: 301 ASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
A+ K T+ L + + A++ L F SKAA L L + +R N
Sbjct: 251 ANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLF-GSKAAALIELTKQLQNRSN 303
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 127/233 (54%), Gaps = 10/233 (4%)
Query: 90 KIHKAMRYSLLAGGKRVRPLLCIASCELVG----GDESWAMPAACALEMIHTMSLIHDDL 145
++ AM YS+LAGGKR+RPLL +A+ + +G + W ALE++HT SLIHDDL
Sbjct: 35 QLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWR--PVMALELLHTYSLIHDDL 92
Query: 146 PFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV-AVNIAGVSPDRVVRAIAEMC 204
P +DND RR +P +H FG A LAGD LL+LA + + A ++ +V+A+A
Sbjct: 93 PAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALA--- 149
Query: 205 SAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVER 264
+A G G+VAG+ DI SE ++ L +L +H KT LL +
Sbjct: 150 TAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPA 209
Query: 265 VRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAK 317
+A GL FQ+ DDILDV S E+GK KD K TYP +G+ A
Sbjct: 210 YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGAN 262
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 154/286 (53%), Gaps = 6/286 (2%)
Query: 73 EQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAAC 130
+Q N+AL + P + + M+Y L GGKR+RP L A+ + G + A
Sbjct: 13 KQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAA 72
Query: 131 ALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIA 189
A+E IH SLIHDDLP +D+D+ RR P H FGE+ AILAGDAL +LA ++ ++
Sbjct: 73 AVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMP 132
Query: 190 GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXX 249
VS + I+E+ SA G+ G+ G+ +D+ +EGK V L LE IH HKT L+
Sbjct: 133 EVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVR 192
Query: 250 XXXXXXXXXXIEVERVRN-YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP 308
V + YA IGL FQV DDILDV + LGK G D GK+TYP
Sbjct: 193 LGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYP 252
Query: 309 KLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASR 352
L+G+E A+ A +L+ A + L ++ + L LA+YI R
Sbjct: 253 ALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 298
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 154/286 (53%), Gaps = 6/286 (2%)
Query: 73 EQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAAC 130
+Q N+AL + P + + M+Y L GGKR+RP L A+ + G + A
Sbjct: 12 KQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAA 71
Query: 131 ALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIA 189
A+E IH SLIHDDLP +D+D+ RR P H FGE+ AILAGDAL +LA ++ ++
Sbjct: 72 AVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMP 131
Query: 190 GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXX 249
VS + I+E+ SA G+ G+ G+ +D+ +EGK V L LE IH HKT L+
Sbjct: 132 EVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVR 191
Query: 250 XXXXXXXXXXIEVERVRN-YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP 308
V + YA IGL FQV DDILDV + LGK G D GK+TYP
Sbjct: 192 LGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYP 251
Query: 309 KLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASR 352
L+G+E A+ A +L+ A + L ++ + L LA+YI R
Sbjct: 252 ALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 139/229 (60%), Gaps = 3/229 (1%)
Query: 90 KIHKAMRYSLLAGGKRVRPLLCIASCELVGGD-ESWAMPAACALEMIHTMSLIHDDLPFL 148
++ +AM YS+ AGGKR+RPLL + + + E+ A +LEMIHT SLIHDDLP +
Sbjct: 37 RLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAM 96
Query: 149 DNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMG 208
D+D+ RR KP +H+VFGE+TAILAGD LL+ A + ++++ G+S V + ++ A G
Sbjct: 97 DDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEK--VLLMQQLAKAAG 154
Query: 209 VEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNY 268
+G+V+G+ DI E ++L+EL +H KT L+E + + +
Sbjct: 155 NQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQF 214
Query: 269 ARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAK 317
A GL FQ+ DD+LD T + +LGK G+D A K+TYP L+GI AK
Sbjct: 215 AHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAK 263
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 140/261 (53%), Gaps = 7/261 (2%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
F E + + V A+ A+ P + AM Y+ GGKR+R L I S + G +
Sbjct: 4 FSERLKEIQDAVETAMAAAIGRLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMA 62
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
AMPAA A+E +H SL+HDD+P +DND+ RR P H+ + ++TA+LAGDAL +LA E
Sbjct: 63 QAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFEL 122
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDV--SLKELEYIHVHKTA 241
+ G + +RV A ++ G EG+V G+ +DIA+E V +L E+ + KT
Sbjct: 123 CTDPVLGSAENRVALVAALAQAS-GAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTG 181
Query: 242 KLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
L+ + + YA +GL FQ+ DDILDV + E GK GKD
Sbjct: 182 ALISFAAQAGAILAGA---DRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAE 238
Query: 302 SGKATYPKLMGIENAKSFAGE 322
+ KAT+ L+G+ AKS A +
Sbjct: 239 AHKATFVSLLGLAGAKSRAAD 259
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 138/248 (55%), Gaps = 11/248 (4%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIAS-CELVG-----GDESWAMPAACALEMIHTMSLIHDD 144
+ KA +L GGKR RP L +A C LVG ++ A ++E +HT SLIHDD
Sbjct: 43 LEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDD 102
Query: 145 LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMC 204
LP +DN RR+ P H + E+TA+L GDAL + + E ++ A + +V I +
Sbjct: 103 LPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFE--LLSNALLESHIIVELIKILS 160
Query: 205 SAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEV-E 263
+ G++G++ G+ +D E ++L++L ++H HKTAKL+ E+ +
Sbjct: 161 ANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFK 220
Query: 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGEL 323
++ + +GL FQV+DDI+DVT+ EE GKT D S K ++ L+G+E A ++A L
Sbjct: 221 WLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNYAQTL 278
Query: 324 LGQAIEEL 331
+ + +L
Sbjct: 279 KTEVLNDL 286
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 138/248 (55%), Gaps = 11/248 (4%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIAS-CELVG-----GDESWAMPAACALEMIHTMSLIHDD 144
+ KA +L GGKR RP L +A C LVG ++ A ++E +HT SLIHDD
Sbjct: 36 LEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDD 95
Query: 145 LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMC 204
LP +DN RR+ P H + E+TA+L GDAL + + E ++ A + +V I +
Sbjct: 96 LPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFE--LLSNALLESHIIVELIKILS 153
Query: 205 SAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEV-E 263
+ G++G++ G+ +D E ++L++L ++H HKTAKL+ E+ +
Sbjct: 154 ANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFK 213
Query: 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGEL 323
++ + +GL FQV+DDI+DVT+ EE GKT D S K ++ L+G+E A ++A L
Sbjct: 214 WLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNYAQTL 271
Query: 324 LGQAIEEL 331
+ + +L
Sbjct: 272 KTEVLNDL 279
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 22/283 (7%)
Query: 64 FEEYMIR---KAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
+EE R KA+ +++ + E + + P +++A R+ LAGGKRVRP + + S E VGG
Sbjct: 4 YEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGG 63
Query: 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
D A+ A A+E+IH SL+HDD+ +D DE RR KP H ++G + AILAGD L S A
Sbjct: 64 DPLRAIYPAVAIELIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKA 121
Query: 181 LEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD-VSLKELEYIHVHK 239
E VA A + P++ R + + A L G+ D+ E K V+++E + K
Sbjct: 122 FEAVAR--AEIPPEKKARVLEVIVKASN--ELCEGQARDLEFEKKSTVTIEEYMEMISGK 177
Query: 240 TAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
T L E ++ + ++ R +G+ FQ+ DD+LD+ ++LGK G D
Sbjct: 178 TGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSD 237
Query: 300 LASGKATYPKLMGIENAK------------SFAGELLGQAIEE 330
+ GK T ENA +AG++ G+ I E
Sbjct: 238 IRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIE 280
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 147/267 (55%), Gaps = 1/267 (0%)
Query: 88 PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPF 147
P + +AMR+ +L GGKR+RP L I S L+GGD + ALE +H SL+HDDLP
Sbjct: 70 PQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPA 129
Query: 148 LDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAM 207
+D+D+ RR +P H F E+TAILAGD+LL+LA + +A + ++ +R + + A
Sbjct: 130 MDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAA 189
Query: 208 GVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRN 267
G+ G+ G+ +D+A+E K + + KT LL E +R+R
Sbjct: 190 GIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRL 249
Query: 268 YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQA 327
+ IGL FQ+ DD+LD+T + +GK GKD A GK T L G A+ E + +A
Sbjct: 250 FGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309
Query: 328 IEELAYFEASKAAPLYFLANYIASRQN 354
E LA + KAA L A +IA R++
Sbjct: 310 SELLAPY-GEKAAILIAAARFIAERKS 335
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 13/245 (5%)
Query: 92 HKAMRYSLLAGGKRVRPLLCIASC-----ELVGGDESWAMPAACALEMIHTMSLIHDDLP 146
++A+ L AGGK R L ++ EL+ + A+ A ALE IHT SLIHDDLP
Sbjct: 28 NEALALXLKAGGKHFRAQLLLSVVQSNKPELL----NQALDVALALEFIHTYSLIHDDLP 83
Query: 147 FLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSA 206
DN + RR P H+ + E+TAIL GDAL + A + ++ A + + ++ I +
Sbjct: 84 AXDNADFRRGIPTLHKSYDETTAILVGDALNTEAF--LVLSHAHLKDEIKIKLIKTLAFN 141
Query: 207 MGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVR 266
G+ G V G+ +D E K +SL ELE++H HKTA+L+ E ++
Sbjct: 142 AGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEICELNNEESNQIY 201
Query: 267 NYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQ 326
+GL+FQ+ DDI+DVT S E+ GK D+ K ++ L+G+E A LL +
Sbjct: 202 KLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIH--KNSFVNLLGLEQAIKTKENLLNE 259
Query: 327 AIEEL 331
++L
Sbjct: 260 CEQDL 264
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 21/250 (8%)
Query: 85 LQPPVKIHKAMRYSLLA-GGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHD 143
+Q V I A+ L+A GGKR+RPL+ +A+ L G D A A+E IHT +L+HD
Sbjct: 46 MQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHD 105
Query: 144 DLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPD---RVVRAI 200
D+ +D + RR K A+H ++G + ++L GD L + A E + + + + R R I
Sbjct: 106 DV--VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVI 163
Query: 201 AEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEXXXXXXXXXXXXX 258
AE GE + + D++L + Y+ + KTA+L
Sbjct: 164 AE------------GEVLQL-MRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVD 210
Query: 259 XIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKS 318
+ E +R+Y +GL FQ+ DD LD ++E LGK AG D GKAT P L+ I +
Sbjct: 211 VAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGP 270
Query: 319 FAGELLGQAI 328
E +AI
Sbjct: 271 REAEFWERAI 280
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 12/243 (4%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDN 150
I+KA + L +GGKRVRP+ + S L + + A +LE++H SL+HDD ++DN
Sbjct: 32 INKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDD--YIDN 89
Query: 151 DERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVE 210
+ RR + H F + TAI G LL+ AL+++A + I E+C
Sbjct: 90 SDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVC------ 143
Query: 211 GLVAGEFVDIASE-GKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYA 269
GEF +A VS KTA L+E ++ +
Sbjct: 144 ---FGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFG 200
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
CIG+ +Q++DDILD T LGK G D+ +G TYP + I N K + L ++
Sbjct: 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVK 260
Query: 330 ELA 332
L
Sbjct: 261 HLT 263
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 16/231 (6%)
Query: 92 HKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDND 151
+AM YS GG R+RPLL + E +G +E + A A+E+ HT SLIHDDLP +DN
Sbjct: 35 EEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNA 94
Query: 152 ERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEG 211
+ RR P+ H +GE A+LAGD L LA I+ + + +E
Sbjct: 95 DFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQ----ISXIGNSXIFEEFSETAYX----- 145
Query: 212 LVAGEFVDIASEGK--DVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYA 269
L+ GE +D+ E + +VS + +E ++ T L + +
Sbjct: 146 LLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLL---G 202
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFA 320
G+ FQ+ DD+ D+ S E++GK GKD + T +GI+ A+ A
Sbjct: 203 EXFGVAFQIYDDLXDILGSFEKVGKDLGKD--TEXVTLVXXVGIQXAREMA 251
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 110/234 (47%), Gaps = 18/234 (7%)
Query: 85 LQPPVKIHKAMRYSLLA---------GGKRVRPLLCIASCELVGGDESWAMPAACALEMI 135
L PP+ A + + GGK VRP L + S E+ G +P A A+E++
Sbjct: 27 LAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELV 86
Query: 136 HTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDR 195
H SL+HDDL +D DE+RR + +V G + AIL GDAL +LA E V + + V R
Sbjct: 87 HNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANE-VLLELGTVEAGR 143
Query: 196 VVRAIAEMCSAMGVEGLVAGEFVDIASEGKD-VSLKELEYIHVHKTAKLLEXXXXXXXXX 254
R + + + L+ G+ DI+ E +D VS++E + +KT LL
Sbjct: 144 ATRRLTKASRS-----LIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVL 198
Query: 255 XXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP 308
+ + Y +GL FQ VDD+L + + GK DL K + P
Sbjct: 199 GGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLP 252
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 131/252 (51%), Gaps = 7/252 (2%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
+ V A A+ P + A Y+ GGKR+R L I S + G + A PAA A+
Sbjct: 12 DAVETAXAAAIGRLPAGDLRDAXAYAA-QGGKRLRAFLAIESAAIHGISXAQAXPAALAV 70
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
E +H SL+HDD P DND+ RR P H+ + ++TA+LAGDAL +LA E + G +
Sbjct: 71 EALHAYSLVHDDXPCXDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA 130
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDV--SLKELEYIHVHKTAKLLEXXXXX 250
+RV A ++ G EG V G+ +DIA+E V +L E+ + KT L+
Sbjct: 131 ENRVALVAALAQAS-GAEGXVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQA 189
Query: 251 XXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKL 310
+ + YA +GL FQ+ DDILDV + E GK GKD + KAT+ L
Sbjct: 190 GAILAGA---DRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSL 246
Query: 311 MGIENAKSFAGE 322
+G+ AKS A +
Sbjct: 247 LGLAGAKSRAAD 258
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 23/244 (9%)
Query: 74 QVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALE 133
+V KAL + + +A+ Y + GGKR+RPLL +A+ E V G A+PAA +E
Sbjct: 16 EVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVE 75
Query: 134 MIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSP 193
+IH SLI+DD+ +D + RR P + FG++ AIL G A+E ++ P
Sbjct: 76 LIHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDNAAILVG-IWYREAIEEAVLDTP--KP 130
Query: 194 DRVVRAIAEMCSAMGVEGLVAGEFVDIASEG-------------KDVSLKELEYIHVHKT 240
+ +AE+ A+ GE +DI E ++V+L + + KT
Sbjct: 131 TLFAKEVAEVIKAID-----EGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKT 185
Query: 241 AKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300
L+ E N+ G+ FQ++DD+LD+ ++ GK GKD+
Sbjct: 186 GALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDI 245
Query: 301 ASGK 304
K
Sbjct: 246 KEHK 249
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEM 134
+ + L +++ ++PP + M + A LC+A+CELVGGD S AM AA A+ +
Sbjct: 12 IERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHL 71
Query: 135 IHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV--- 191
+H + +H+ LP D R SKPA +G + +L GD ++ E +A ++
Sbjct: 72 VHAAAYVHEHLPLTDGS-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTD 130
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAG-----EFVDIASEGKDVSLKELEYIHVHKTAKLLEX 246
PDR++R I E+ A G EG+++G E VD + SL +EY+ K ++
Sbjct: 131 DPDRILRVIIEISRAGGPEGMISGLHREEEIVD-----GNTSLDFIEYVCKKKYGEMHAC 185
Query: 247 XXXXXXXXXXXXXIEVERVRNYARCIGLL---------FQVVD-DILDVTK--SSEELGK 294
E++++RN+ G L Q++D +I+ K + EELG
Sbjct: 186 GAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGG 245
Query: 295 TAGKD 299
GK+
Sbjct: 246 FHGKN 250
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 14/236 (5%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEM 134
VN + E + + +I + + + AGGKR+RP+L +A+ LVG + + A +E
Sbjct: 25 VNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEF 84
Query: 135 IHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPD 194
IHT +L+HDD+ +D +RR +P ++ ++ +++L GD L + + + +
Sbjct: 85 IHTATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQL----MTDTGNM 138
Query: 195 RVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEXXXXXXX 252
RV+ +A + + GE + + + ++++ E Y+ V KTA L
Sbjct: 139 RVMEILANASAV-----IAEGEVLQLTA-AQNLATTEDIYLRVIRGKTAALFSAATEVGG 192
Query: 253 XXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP 308
+V+ + +Y +G+ FQ+VDD+LD S E+GK G D K T P
Sbjct: 193 IIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMP 248
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
+EEY V + E++ L + K + + +GGKR+RP++ + E+ G S
Sbjct: 8 WEEY-----RYVEAGIKESITLIEDPGLKKXVEHVCHSGGKRIRPIILLLVSEICSGSYS 62
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
++ AA A+E H+ SLIHDDL LD RR+ P++ E FG S A+L GD L
Sbjct: 63 RSLNAALAVEXXHSASLIHDDL--LDQGLVRRNLPSAPEKFGPSGALLCGDYL------- 113
Query: 184 VAVNIAGVSP--DRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HK 239
+A +IA +SP ++V++ + GE +D+ E D S E +Y K
Sbjct: 114 IAKSIAFISPYGEKVIQDFGKAGXDX-----AEGEVLDLKLE--DESFGENDYFKCIYKK 166
Query: 240 TAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILD 284
TA L ER ++ +G +Q+VDDIL+
Sbjct: 167 TASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILE 211
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 15/231 (6%)
Query: 102 GGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASH 161
GK +RP+L + L G + AA +LE++HT SL+HDD+ +D RR + + +
Sbjct: 46 NGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--VDESTERRGQLSVN 103
Query: 162 EVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIA 221
+F ++LAGD LL+ +L H + ++R + S++G + L GE + +
Sbjct: 104 AIFNNKVSVLAGDYLLATSLVHA----EQTNNYEIIR----LVSSLG-QKLAEGELLQL- 153
Query: 222 SEGKDVSLKELEYIHV--HKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S + S E Y V KTA L EV R IG+ FQ+
Sbjct: 154 SNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIK 213
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330
DDI D S+++GK G D+ GK T P L + K E + ++E
Sbjct: 214 DDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKE 263
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 17/226 (7%)
Query: 101 AGGKRVRPLLCIASCELVGGDESWA---MPAACALEMIHTMSLIHDDLPFLDNDERRRSK 157
AGGKR RP+ + + E G++ + + AA +E+ H +L HDD+ +D RR
Sbjct: 72 AGGKRFRPMFALLASEF--GEKPLSENVIKAAVVVEITHLATLYHDDV--MDEASMRRGV 127
Query: 158 PASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEF 217
P+++ + S AILAGD LL+ A +G+ +A G LV G+
Sbjct: 128 PSANARWDNSVAILAGDILLAHA--------SGLMSQLGTDTVAHFAETFGE--LVTGQM 177
Query: 218 VDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQ 277
+ ++ + KT L+ ++ ++N+ +G++FQ
Sbjct: 178 RETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQ 237
Query: 278 VVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGEL 323
+VDDI+D+ + E GKT G DL G T P L + EL
Sbjct: 238 IVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAEL 283
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEM 134
+ L +A+ ++ P + + M + A + LC+A+CELVGGD S AM AA A+ +
Sbjct: 17 IESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHL 76
Query: 135 IHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV--S 192
+H + H++LP D SK F + +L GD ++ LE +A ++ +
Sbjct: 77 MHVAAYTHENLPLTDGP---MSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNN 133
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIA-SEGKDVSLKELEYIHVHKTAKLLEXXXXXX 251
PDR++RAI E+ MG EG+V G++ ++ ++ D+ L +EY+ K L
Sbjct: 134 PDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLEL--IEYVCKKKEGTLHACGAACG 191
Query: 252 XXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM 311
++E++R + GL V +L +S E G+ K +
Sbjct: 192 AILGGCDEDKIEKLRRF----GLYVGTVQGLLGKNRSGFE-----------GRIKELKEL 236
Query: 312 GIENAKSFAGE 322
++ +SF GE
Sbjct: 237 AVKELESFGGE 247
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 36/245 (14%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEM 134
+ + L +++ ++PP + M + A LC+A+CELVGGD S AM AA A+ +
Sbjct: 12 IERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHL 71
Query: 135 IHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV--- 191
+H + +H+ LP PA +G + +L GD ++ E +A ++
Sbjct: 72 VHAAAYVHEHLP-----------PAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTD 120
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAG-----EFVDIASEGKDVSLKELEYIHVHKTAKLLEX 246
PDR++R I E+ A G EG+++G E VD + SL +EY+ K ++
Sbjct: 121 DPDRILRVIIEISRAGGPEGMISGLHREEEIVD-----GNTSLDFIEYVCKKKYGEMHAC 175
Query: 247 XXXXXXXXXXXXXIEVERVRNYARCIGLL---------FQVVD-DILDVTK--SSEELGK 294
E++++RN+ G L Q++D +I+ K + EELG
Sbjct: 176 GAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGG 235
Query: 295 TAGKD 299
GK+
Sbjct: 236 FHGKN 240
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
EMIH SL+HDD+ LD+ + RR + + V G ++LAGD LLS A +A +
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGA----LAALK 150
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASE-----GKDVSLKELEYIHVHKTAKLLEXX 247
VV +A VE LV GE ++I S D +++ Y KTA L+
Sbjct: 151 NTEVVALLA-----TAVEHLVTGETMEITSSTAARYSMDYYMQKTYY----KTASLISNS 201
Query: 248 XXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY 307
Y R +GL FQ++DDILD T +S LGK + D+ G T
Sbjct: 202 CKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITA 261
Query: 308 PKLMGIE 314
P L +E
Sbjct: 262 PILFAME 268
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
EMIH SL+HDD+ LD+ + RR + + V G ++LAGD LLS A +A +
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGA----LAALK 150
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD-VSLKELEYIHVHKTAKLLEXXXXXX 251
VV +A VE LV GE ++I S + S+ +KTA L+
Sbjct: 151 NTEVVALLA-----TAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAV 205
Query: 252 XXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM 311
Y R +GL FQ++DDILD T +S LGK + D+ G T P L
Sbjct: 206 AVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILF 265
Query: 312 GIE 314
+E
Sbjct: 266 AME 268
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 34/293 (11%)
Query: 50 SVFESTDIPLPTFPFEEYMIRKAEQVNKA--LDEAVVLQPPVKIHKAMRYSLLAGGKRVR 107
S F++ D+ L FP E + + Q A L A + P +R +L GGKR+R
Sbjct: 9 SSFDAHDLDLDKFP--EVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIR 66
Query: 108 PLLCIASCELVGGDESWA------MPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASH 161
PL A G ++ + + AA +LE I +LIHDD+ +D+ + RR P H
Sbjct: 67 PLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVH 124
Query: 162 ----------------EVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCS 205
E FG S +ILAGD L A + + +G+S + + R +
Sbjct: 125 RAVEADHRANNFEGDPEHFGVSVSILAGDXALVWAED--XLQDSGLSAEALART-RDAWR 181
Query: 206 AMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIE-VE 263
E ++ G+ +DI E + S++ + ++ KTA + ++
Sbjct: 182 GXRTE-VIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLID 240
Query: 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENA 316
+ +Y IG+ FQ+ DD+L V GK AG D+ GK T + ++ A
Sbjct: 241 ALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA---L 181
A+ +EMI T SL+HDD+ +D RR P+ + +FG A++ GD S A L
Sbjct: 59 ALNLCTIVEMIQTASLLHDDV--IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFEL 116
Query: 182 EHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTA 241
+ IA + V+R S +E + GE + K + LE KTA
Sbjct: 117 SKMGELIAQALSNAVLR-----LSRGEIEDVFVGECFN---SDKQKYWRILE----DKTA 164
Query: 242 KLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
+E + + ++ G+ FQ++DD+LD+T+ ++ LGK D
Sbjct: 165 HFIEASLKSMAILLNK---DAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFK 221
Query: 302 SGKATYPKLM 311
GK T P L+
Sbjct: 222 EGKTTLPYLL 231
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L ++ EH I +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVL-VSAEHTVEEIGN---NKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSAKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLYSLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 16/256 (6%)
Query: 68 MIRKAEQVNKALDEAVV--LQPPVKIHKAMRYSL-LAGGKRVRPLLCIASCELVGGDESW 124
M+ E + +AL E ++ L P +++ + GGK +R LL + S G
Sbjct: 1 MVPAPEAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEA 60
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV 184
+ AA ALE+ L+HDD+ D E RR +PA H + A+ AGDA+ + +
Sbjct: 61 GLEAATALELFQNWVLVHDDIE--DGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLL 118
Query: 185 AVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFVD-IASEGKDVSLKELEYIHV--HKT 240
A +A G+ P V+ E+ V G+ +D + + G L+ +Y + HK
Sbjct: 119 AEGLARGLFPPEVLLEFHEV-----VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKA 173
Query: 241 AKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300
A R +G FQ+VDD+L++ + E GK DL
Sbjct: 174 AYYTAVAPLRLGALLAGKTPPAAYEEGGLR-LGTAFQIVDDVLNL-EGGEAYGKERAGDL 231
Query: 301 ASGKATYPKLMGIENA 316
GK T L +E A
Sbjct: 232 YEGKRTLILLRFLEEA 247
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDR-VVRAIAEMCSAMGVEGLVAGEFV 218
+ ++G+ A+ AGD +L A H I R + I +M A E +
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAF-HTVEEIGNNKARRAALNVIGKMSEA---------ELI 145
Query: 219 DIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQV 278
+ S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 146 EQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQM 202
Query: 279 VDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 203 FDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAALNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDR--VVRAIAEMCSAMGVEGLVAGEF 217
+ ++G+ A+ AGD +L A V AG + R + I +M A E
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFH--TVEEAGNNKARRAALNVIGKMSEA---------EL 144
Query: 218 VDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQ 277
++ S K ++ +E I K+ L E + N IG ++Q
Sbjct: 145 IEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQ 201
Query: 278 VVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
+ DDI+D E++GK DL +G A++P + +E
Sbjct: 202 MFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE+ H SL+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELYHLASLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 15/190 (7%)
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV 184
A+ + ALE++H SL+HDD+ +D RR K + ++G+ A+ AGD +L A V
Sbjct: 63 AISSLAALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV 120
Query: 185 AVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLL 244
+ +++ RA + M E ++ S K ++ +E I K+ L
Sbjct: 121 ----EEIGNNKLRRAFLNVIGKMS-----EAELIEQLSRYKPITKEEYLRIVEGKSGALF 171
Query: 245 EXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGK 304
E + N IG ++Q+ DDI+D E++GK DL +G
Sbjct: 172 GLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGV 227
Query: 305 ATYPKLMGIE 314
A++P + +E
Sbjct: 228 ASFPLVTAME 237
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 15/190 (7%)
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV 184
A+ + ALE++H SL+HDD+ +D RR K + ++G+ A+ AGD +L A V
Sbjct: 63 AISSLAALELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV 120
Query: 185 AVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLL 244
+ +++ RA + M E ++ S K ++ +E I K+ L
Sbjct: 121 ----EEIGNNKLRRAFLNVIGKMS-----EAELIEQLSRYKPITKEEYLRIVEGKSGALF 171
Query: 245 EXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGK 304
E + N IG ++Q+ DDI+D E++GK DL +G
Sbjct: 172 GLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGV 227
Query: 305 ATYPKLMGIE 314
A++P + +E
Sbjct: 228 ASFPLVTAME 237
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVGGD-ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASH 161
GK +R L I S + G + A+ + ALE++H SL+HDD+ +D RR K +
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGEAAISSLAALELVHLASLLHDDV--IDGARFRRGKETIN 97
Query: 162 EVFGESTAILAGDALLSLALEHVAVNIAGVSPDR--VVRAIAEMCSAMGVEGLVAGEFVD 219
++G+ A+ AGD +L A V AG + R + I +M A E ++
Sbjct: 98 FMYGDKAAVAAGDLVLVSAFH--TVEEAGNNKARRAALNVIGKMSEA---------ELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H L+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLYFLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 24/242 (9%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRP-LLCIASCELVGGDE 122
++Y++R + N QP IH + L +GGK +RP + S
Sbjct: 28 LQDYLLRTVQLDN---------QP---IHHKILALLKSGGKLLRPGYFYLFSTFGNAATP 75
Query: 123 SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALE 182
+ A A+E++H +LIHDD+ +D+ RR +G+ AI AGD + ++ +
Sbjct: 76 AQLQAGAAAIEILHVGTLIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFD 133
Query: 183 HVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDI-ASEGKDVSLKELEYIHVHKTA 241
V + + DR + I AM ++ GE + + +D++L KTA
Sbjct: 134 QVLKS----TTDRSL--IQNHIDAM--HRILQGELHQMDLNYREDITLDAYLNEIAGKTA 185
Query: 242 KLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
+L ++R R+ IG +Q++DDILD + K +DL
Sbjct: 186 ELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLR 245
Query: 302 SG 303
SG
Sbjct: 246 SG 247
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 26/243 (10%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRP-LLCIASCELVGGDE 122
++Y++R + N QP IH + L +GGK +RP + S
Sbjct: 21 LQDYLLRTVQLDN---------QP---IHHKILALLKSGGKLLRPGYFYLFSTFGNAATP 68
Query: 123 SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALE 182
+ A A+E++H +LIHDD+ +D+ RR +G+ AI AGD + ++ +
Sbjct: 69 AQLQAGAAAIEILHVGTLIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFD 126
Query: 183 HVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEF--VDIASEGKDVSLKELEYIHVHKT 240
V + + DR + I AM ++ GE +D+ +D++L KT
Sbjct: 127 QVLKS----TTDRSL--IQNHIDAM--HRILQGELHQMDLNYR-EDITLDAYLNEIAGKT 177
Query: 241 AKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300
A+L ++R R+ IG +Q++DDILD + K +DL
Sbjct: 178 AELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDL 237
Query: 301 ASG 303
SG
Sbjct: 238 RSG 240
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H L+HDD+ +D RR K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLAFLLHDDV--IDGARFRRGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D R K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFARGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 103 GKRVRPLLCIASCELVG---GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
GK +R L I S + G G++ A+ + ALE++H SL+HDD+ +D R K
Sbjct: 40 GKMLRVRLSILSFKNRGVEIGED--AISSLAALELVHLASLLHDDV--IDGARFRAGKET 95
Query: 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219
+ ++G+ A+ AGD +L A V + +++ RA + M E ++
Sbjct: 96 INFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFLNVIGKMS-----EAELIE 146
Query: 220 IASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVV 279
S K ++ +E I K+ L E + N IG ++Q+
Sbjct: 147 QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMF 203
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
DDI+D E++GK DL +G A++P + +E
Sbjct: 204 DDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 87/223 (39%), Gaps = 23/223 (10%)
Query: 96 RYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRR 155
+Y L GK+VR L A + E EM+H SL+ DD+ DN + RR
Sbjct: 18 KYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE--DNSKLRR 75
Query: 156 SKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRV---VRAIAEMCSAMGVEGL 212
P +H ++G + I + + + L LE V + PD V R + E+ G
Sbjct: 76 GFPVAHSIYGIPSVINSANYVYFLGLEKV---LTLDHPDAVKLFTRQLLELHQGQG---- 128
Query: 213 VAGEFVDIASEGKDVSLKELEY--IHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYAR 270
+DI E EY + + KT L E ++
Sbjct: 129 -----LDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK----EDLKPLLN 179
Query: 271 CIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGI 313
+GL FQ+ DD ++ K+ +DL GK ++P + I
Sbjct: 180 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 222
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 99 LLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKP 158
+L GKR R L + +GGD + A A+E++H+ SL DD+ +D D RR
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDI--VDLDATRRGDK 102
Query: 159 ASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218
A+ V+G I + L+ AL + + D + E+ V G
Sbjct: 103 AAWVVYGNRKVIFITNYLIPTALRIIQTSYG----DDALNTSIELEKDTSV-----GALR 153
Query: 219 DIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQV 278
D+ + EL+ + K + +L +++ + + +G+++QV
Sbjct: 154 DMYDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTK-------QQMLDVGKYLGIIYQV 206
Query: 279 VDDILDV-TKSSEELGKTA 296
+DD +D TK EE+ +A
Sbjct: 207 IDDFVDYKTKKVEEIDGSA 225
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 99 LLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKP 158
+L GKR R L + +GGD + A A+E++H+ SL D+ +D D RR
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGDK 102
Query: 159 ASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218
A+ V+G I + L+ AL + + D + E+ V G
Sbjct: 103 AAWVVYGNRKVIFITNYLIPTALRIIQTSYG----DDALNTSIELWKDTSV-----GALR 153
Query: 219 DIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQV 278
D+ + EL+ + K + +L +++ + + +G+++QV
Sbjct: 154 DMYDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTK-------QQMLDVGKYLGIIYQV 206
Query: 279 VDDILDV-TKSSEELGKTA 296
+DD +D TK EE+ +A
Sbjct: 207 IDDFVDYKTKKVEEIDGSA 225
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 35/262 (13%)
Query: 88 PVKIHKAMRYSLLAGGKRVRPLLCIA---SCELVGGDESWAMPAACALEMIHTMSLIHDD 144
P+ + KA+R+ + GK +RPLL + S + + + AA +E++H +SL+ DD
Sbjct: 30 PISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDD 89
Query: 145 LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMC 204
+ +D ++RR ++G+ AI+A D L++ +++ +AVN+ VV +A++
Sbjct: 90 V--MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIK-MAVNLGA----DVVTYLADVA 142
Query: 205 SAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIEVER 264
+ V G+ +D+ E +D K E+ KTA L+E + +E
Sbjct: 143 QRLSV-----GQALDLEGE-RD---KAAEF----KTAPLIEAALVMPLVILGRREL-IET 188
Query: 265 VRNYARCIGLLFQVVDDILD------VTKS-SEELGKTAGK---DLASGKATYPKLMGIE 314
+ +G+L+Q DD D TKS + E+G+ K + A + +L+
Sbjct: 189 AKKLGTKLGILYQYSDDYSDENVERPETKSIANEIGRYLLKIKEHVGDAIAPFERLIKYL 248
Query: 315 NAKSFAGEL-LGQAIEELAYFE 335
K+ G L + + I E YF+
Sbjct: 249 IGKALEGTLTVSRTIAENLYFQ 270
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 15/173 (8%)
Query: 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIA 201
HDD+ +D RR K + ++G+ A+ AGD +L A V + +++ RA
Sbjct: 80 HDDV--IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV----EEIGNNKLRRAFL 133
Query: 202 EMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEXXXXXXXXXXXXXXIE 261
+ M E ++ S K ++ +E I K+ L
Sbjct: 134 NVIGKMS-----EAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG-- 186
Query: 262 VERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
E + N IG ++Q+ DDI+D E++GK DL +G A++P + +E
Sbjct: 187 -EDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 102/271 (37%), Gaps = 48/271 (17%)
Query: 85 LQPPVKIHKAMRYSLL-----AGGKRVRPLLCIASCELVGGDE----SWAMPA--ACALE 133
L+ +K H + Y LL GGK R +L I E V + W A A +E
Sbjct: 57 LEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIE 116
Query: 134 MIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL-----------SLALE 182
++ L+ DD+ +D E RR+K + + T D LL L E
Sbjct: 117 ILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNE 174
Query: 183 HVAVNIAGVSPDRVVRAI--------------AEMCSAMGVEGLVAGE--FVDIASEGKD 226
V++ D ++ I ++ + V + E +DI
Sbjct: 175 SCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINM---- 230
Query: 227 VSLKELEYIHVHKTAK---LLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDIL 283
++ + I +HKTA L + +++ + + +G FQ+ DD L
Sbjct: 231 INFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYL 290
Query: 284 DVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
D+ S + GK G D+ + K T+P + E
Sbjct: 291 DIFGDSTKTGK-VGSDIQNNKLTWPLIKTFE 320
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 102/271 (37%), Gaps = 48/271 (17%)
Query: 85 LQPPVKIHKAMRYSLL-----AGGKRVRPLLCIASCELVGGDE----SWAMPA--ACALE 133
L+ +K H + Y LL GGK R +L I E V + W A A +E
Sbjct: 56 LEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIE 115
Query: 134 MIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL-----------SLALE 182
++ L+ DD+ +D E RR+K + + T D LL L E
Sbjct: 116 ILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNE 173
Query: 183 HVAVNIAGVSPDRVVRAI--------------AEMCSAMGVEGLVAGE--FVDIASEGKD 226
V++ D ++ I ++ + V + E +DI
Sbjct: 174 SCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINM---- 229
Query: 227 VSLKELEYIHVHKTAK---LLEXXXXXXXXXXXXXXIEVERVRNYARCIGLLFQVVDDIL 283
++ + I +HKTA L + +++ + + +G FQ+ DD L
Sbjct: 230 INFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYL 289
Query: 284 DVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
D+ S + GK G D+ + K T+P + E
Sbjct: 290 DIFGDSTKTGK-VGSDIQNNKLTWPLIKTFE 319
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY--PKLMGIENAK 317
+E+ V A IG FQV DD++D E+LGK G D+ K ++ +G NA
Sbjct: 229 VEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAA 287
Query: 318 SFA 320
A
Sbjct: 288 QVA 290
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY--PKLMGIENAK 317
+E+ V A IG FQV DD++D E+LGK G D+ K ++ +G NA
Sbjct: 230 VEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAA 288
Query: 318 SFA 320
A
Sbjct: 289 QVA 291
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY--PKLMGIENAK 317
+E+ V A IG FQV DD++D E+LGK G D+ K ++ +G NA
Sbjct: 230 VEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAA 288
Query: 318 SFA 320
A
Sbjct: 289 QVA 291
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDN 150
I K + LL GK R L + ++ + + +E++H SL+ DD+ DN
Sbjct: 28 ISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIE--DN 85
Query: 151 DERRRSKPASHEVFGESTAILAGDALLSLALEHVA 185
RR + SH +FG + I + + A++ V+
Sbjct: 86 APLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVS 120
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY--PKLMGIENAK 317
+E V A IG FQV DD+ D E+LGK G D+ K ++ +G NA
Sbjct: 230 VEXNLVERVAHLIGEYFQVQDDVXDCFTPPEQLGKV-GTDIEDAKCSWLAVTFLGKANAA 288
Query: 318 SFA 320
A
Sbjct: 289 QVA 291
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 179 LALEHVAVNIAGVSPDRVV----RAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEY 234
L L H A AGV R+V R + + A+G+ ++ F+ + G V +EL
Sbjct: 167 LRLLHEASAAAGVRHHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQ 226
Query: 235 IHVHKTAKLL 244
+H K LL
Sbjct: 227 LHAAKDVDLL 236
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 269 ARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKS 318
A +G FQV DD++D E LGK G D+ K ++ + + A S
Sbjct: 267 AMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASS 315
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 269 ARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKS 318
A +G FQV DD++D E LGK G D+ K ++ + + A S
Sbjct: 290 AMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASS 338
>pdb|1GQW|A Chain A, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GQW|B Chain B, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GY9|A Chain A, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1GY9|B Chain B, TaurineALPHA-Ketoglutarate Dioxygenase From Escherichia
Coli
pdb|1OS7|A Chain A, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|B Chain B, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|C Chain C, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OS7|D Chain D, Crystal Structure Of Taud With Iron, Alpha-Ketoglutarate
And Taurine Bound At Ph 7.5
pdb|1OTJ|A Chain A, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|B Chain B, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|C Chain C, Crystal Structure Of Apo (Iron-Free) Taud
pdb|1OTJ|D Chain D, Crystal Structure Of Apo (Iron-Free) Taud
Length = 283
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 7 IPSYGNSTLFRNPINDFKKSPYRAPIFRFKLFSKKIKARHAQNSVFESTDIPLPTFPFEE 66
+PS G TL+ + I + Y A F+ ++A H F + F E
Sbjct: 119 LPSTGGDTLWTSGI-----AAYEALSVPFRQLLSGLRAEHD----FRKS--------FPE 161
Query: 67 YMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGK 104
Y RK E+ ++ EAV PP+ +H +R ++G +
Sbjct: 162 YKYRKTEEEHQRWREAVAKNPPL-LHPVVRTHPVSGKQ 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,466,450
Number of Sequences: 62578
Number of extensions: 363958
Number of successful extensions: 1071
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 78
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)