BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037716
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 246/308 (79%), Gaps = 1/308 (0%)
Query: 48 QNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVR 107
+ ++ E + P P+F F+ YM++K +N+AL+ A+ LQ P KIH++MRYSLLAGGKRVR
Sbjct: 63 EETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVR 122
Query: 108 PLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGES 167
P LC+A+CELVGG++S AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H VFGE
Sbjct: 123 PALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGED 182
Query: 168 TAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG-KD 226
A+LAGDALL+ A EH+AV+ VS R+VRA+ E+ A+G EGLVAG+ VDI SEG +
Sbjct: 183 VAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSE 242
Query: 227 VSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVT 286
V L++LE+IH+HKTAKLLE AVV GA++GGG EVE++R YAR IGLLFQVVDDILDVT
Sbjct: 243 VDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVT 302
Query: 287 KSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLA 346
KSS+ELGKTAGKDL + K TYPKL+GIE ++ FA +L +A E+LA F+ KAAPL LA
Sbjct: 303 KSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALA 362
Query: 347 NYIASRQN 354
NYIA RQN
Sbjct: 363 NYIAHRQN 370
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/299 (66%), Positives = 242/299 (80%), Gaps = 5/299 (1%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
+F F Y+I KAE VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG
Sbjct: 73 SFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGG 132
Query: 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
+ES AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H+VFGE A+LAGDALLS A
Sbjct: 133 EESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFA 192
Query: 181 LEHVAVNIAG--VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYI 235
EH+A + VSP RVVRA+ E+ A+G EGLVAG+ VDI+SEG DV L+ LE+I
Sbjct: 193 FEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFI 252
Query: 236 HVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
H+HKTA LLEA+ V GA++GGG+ E+ER+R +ARCIGLLFQVVDDILDVTKSS+ELGKT
Sbjct: 253 HLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKT 312
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
AGKDL + K TYPK+MG+E ++ FA +L +A ++L F++ K APL LANYIA RQN
Sbjct: 313 AGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/297 (66%), Positives = 241/297 (81%), Gaps = 4/297 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F Y+IRKA+ VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CELVGG+
Sbjct: 70 FDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGE 129
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
ES AMPA CA+EMIHTMSLIHDDLP +DND+ RR KP +H+V+GE A+LAGDALLS A
Sbjct: 130 ESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAF 189
Query: 182 EHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD---VSLKELEYIHV 237
EH+A + VSP RVVRA+ E+ A+G EGLVAG+ VDI+SEG D V L+ L++IH+
Sbjct: 190 EHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHL 249
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
HKTA LLEA+ V G +IGGG+ E+ER+R +ARCIGLLFQVVDDILDVTKSS+ELGKTAG
Sbjct: 250 HKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAG 309
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
KDL + K TYPKLMG+E ++ FA +L +A ++L F++ K APL LANYIA+RQN
Sbjct: 310 KDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/296 (67%), Positives = 238/296 (80%), Gaps = 4/296 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F YMI KA VN+ALD AV L+ P+KIH+A+RYSLLA GKRVRP+LCIA+CELVGG+
Sbjct: 53 FDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGE 112
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
ES A+PAACA+EMIHTMSLIHDDLP +DND+ RR KP +H+VFGE A+LAGDAL+S A
Sbjct: 113 ESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAF 172
Query: 182 EHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYIHVH 238
EH+A + A VSP RVVRAI E+ A+G +GLVAG+ VD+ S G DV L+ LE+IHVH
Sbjct: 173 EHLATSTA-VSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVH 231
Query: 239 KTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298
KTA LLEAA V GA++GGG+ EVE++R +ARCIGLLFQVVDDILDVTKSSEELGKTAGK
Sbjct: 232 KTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGK 291
Query: 299 DLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
DL + K TYPKLMG+E +K FA +LL A E+L F++S+ PL LANYIA RQN
Sbjct: 292 DLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKRQN 347
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/352 (56%), Positives = 253/352 (71%), Gaps = 10/352 (2%)
Query: 12 NSTLFRNPINDFKKSPYRAPIFRFKLFSKK--------IKARHAQNSVFESTDIPLPTFP 63
N TL N F K P + KL K+ A ++ E+ P F
Sbjct: 19 NQTLSYKSFNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEP-FN 77
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
F+ Y+ KA VNKALDEA++++ P IH+AMRYSLLAGGKRVRP+LC+A+CELVGG++
Sbjct: 78 FKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQE 137
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
AM AACA+EMIHTMSLIHDDLP +DND+ RR KP +H+++GE A+LAGD+LL+ A EH
Sbjct: 138 NAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEH 197
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAK 242
+ + AGV+P R+V A+AE+ ++G EGLVAG+ DI G VSL+ LE+IHVHKTA
Sbjct: 198 IVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAA 257
Query: 243 LLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302
LLE++VV GA++GGG +EVE++R +ARCIGLLFQVVDDILDVTKSSEELGKTAGKDL
Sbjct: 258 LLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVV 317
Query: 303 GKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
K TYPKL+G+E AK FA EL +A ++L F++ KAAPL LA+YIA R N
Sbjct: 318 DKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/292 (63%), Positives = 235/292 (80%), Gaps = 1/292 (0%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
F+ YMI KA VNKAL++AV+++ P+KIH++MRYSLLAGGKRVRP+LCIA+CEL GG ES
Sbjct: 66 FKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTES 125
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
AMP+ACA+EMIHTMSL+HDDLP +DND+ RR KP +H+VFGE A+LAGDALL+ A EH
Sbjct: 126 VAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEH 185
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG-KDVSLKELEYIHVHKTAK 242
+A GVS +R+VR + E+ +G EGLVAG+ VD+ SEG DV L+ LE+IH+HKTA
Sbjct: 186 IATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAA 245
Query: 243 LLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302
LLE +VV GA++GG N ++ ++R +ARCIGLLFQVVDDILDVTKSS+ELGKTAGKDL +
Sbjct: 246 LLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVA 305
Query: 303 GKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
K TYPKL+GI+ ++ FA +L +A E+LA F+ KAAPL LANYIA R N
Sbjct: 306 DKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/337 (57%), Positives = 243/337 (72%), Gaps = 16/337 (4%)
Query: 25 KSPYRAPIFRFK----LFSKKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALD 80
KSP A IF K IK V E D +F F+ YMI KAE +N+ALD
Sbjct: 45 KSPVAAAIFARKDTREFLDSSIKL------VNEEDDFGF-SFDFKPYMISKAETINRALD 97
Query: 81 EAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSL 140
EA+ L P+ IHKAMRY++LAGGKRVRP+LC+A+CELVGG+E A+ AACA+EMIHTMSL
Sbjct: 98 EAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSL 157
Query: 141 IHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAI 200
I DDLP +DND+ RR KP +H+VFGES AIL+G ALL+LA EH+ A VS ++VRA+
Sbjct: 158 IKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTE--ADVSSKKMVRAV 215
Query: 201 AEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGG 257
E+ ++G +GLVAG+ D++SEG DV L++LEYIHVHKT LLEA+ V GAVIGGG
Sbjct: 216 KELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGG 275
Query: 258 NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAK 317
E+E+VRN+ARCIGLLFQVVDDILD TKSSEELGKTAGKD +GK TYPK++G+E +K
Sbjct: 276 TEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSK 335
Query: 318 SFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
F +L A E L F++ K PL L N+IA+R +
Sbjct: 336 EFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/297 (61%), Positives = 226/297 (76%), Gaps = 5/297 (1%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
TF F+ YM+ KAE VNKAL+EA+ + P+KIH+AMRY++LA GKRVRP+LC+ASCELVGG
Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGG 141
Query: 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
E+ AMPAACA+EMIHTMSLI DDLP +DND+ RR KP +H+V+GE AIL+G ALLSLA
Sbjct: 142 QENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLA 201
Query: 181 LEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD---VSLKELEYIHV 237
EH+ A +S +R+V A+ E+ ++G GLVAG+ +DI+SEG D V L+ LE+IHV
Sbjct: 202 FEHMTT--AEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHV 259
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
HKTA LLE A V GA+IGGG+ E+E VR +ARCIGLLFQVVDDILD TKSSEELGKTAG
Sbjct: 260 HKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAG 319
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
KD +GK TYPKL+G+E +K F L A + L F + K APL L +IA+R
Sbjct: 320 KDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANRNK 376
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 189/340 (55%), Positives = 240/340 (70%), Gaps = 19/340 (5%)
Query: 26 SPYRAPIFRFKLFSKKIKARHAQNSVFESTDIPLPT-----FPFEEYMIRKAEQVNKALD 80
S +R+ F F F R N V + PL + F F YM+ KA+ VNKAL+
Sbjct: 13 SIFRSLQFLFWRF------RPRYNDVTSALTRPLTSAASYDFKFMSYMVNKAKSVNKALE 66
Query: 81 EAVVL-QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMS 139
EAV L +P +KI +AMRY+LL+ GKRVRP+LC+A+CELVGG ES AM AACA+EM+H S
Sbjct: 67 EAVPLREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASS 126
Query: 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV-AVNIAGVSPDRVVR 198
LI DDLP +DND RR KP +H VFGES AILA AL++LA++ + A V P+R+++
Sbjct: 127 LILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTSSTFADVPPERILK 186
Query: 199 AIAEMCSAMGVEGLVAGEFVDIASEG----KDVSLKELEYIHVHKTAKLLEAAVVCGAVI 254
+ EM A VEGLVAG+ D+A EG D L+ LE+IH+HKTA LLEAA V GA++
Sbjct: 187 TVQEMVKA--VEGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLEAAAVMGAIM 244
Query: 255 GGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314
GGG+ E+ER+R+YARCIGL+FQVVDD+LDVTKSSEELGKTAGKDL +GK TYP+LMG+E
Sbjct: 245 GGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLMGVE 304
Query: 315 NAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
+K +A L +A E L F+ K APL LA+YI +RQN
Sbjct: 305 KSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 185/298 (62%), Positives = 237/298 (79%), Gaps = 5/298 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVV-LQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
F F+ YMIRKAE VN ALD ++V L+ P+ + +A+RYSLLAGGKRVRPLLCIA CELVGG
Sbjct: 64 FDFKLYMIRKAESVNAALDVSIVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGG 123
Query: 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
DE+ AM AACA+EMIHT SLIHDDLP +DN + RR KP +H+VFGE A+LAGDALL+LA
Sbjct: 124 DEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALA 183
Query: 181 LEHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYIH 236
EH+ V +G V+ +R++RA+ E+ A+G +GLVAG+ VD++SE DV L+ LE+IH
Sbjct: 184 FEHMTVVSSGLVASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIH 243
Query: 237 VHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTA 296
+HKTA LLEAA V GA++GGG E+E++R YARCIGLLFQVVDDILDVTKS+EELGKTA
Sbjct: 244 LHKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTA 303
Query: 297 GKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
GKD+ +GK TYP+L+G+E ++ A +L +A E+L FE+ KAAPL LA+YI+ R +
Sbjct: 304 GKDVMAGKLTYPRLIGLERSREVAEKLSREAEEQLLGFESDKAAPLVALASYISCRND 361
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 186/297 (62%), Positives = 235/297 (79%), Gaps = 4/297 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F+ YMIRKAE VN ALD +V L+ P+ + +A+RYSLLAGGKRVRPLLCIA CELVGGD
Sbjct: 64 FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGD 123
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
E+ AM AACA+EMIHT SLIHDDLP +DN + RR KP +H+V+GE A+LAGDALL+LA
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAF 183
Query: 182 EHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD---VSLKELEYIHV 237
EH+ V +G V+P+R++RA+ E+ A+G GLVAG+ +D+ASE + V L+ LE+IH+
Sbjct: 184 EHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHL 243
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
HKTA LLEAA V G ++GGG E+E++R YARCIGLLFQVVDDILDVTKS+EELGKTAG
Sbjct: 244 HKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAG 303
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
KD+ +GK TYP+L+G+E +K A +L +A E+L F+ SKAAPL LA+YIA R N
Sbjct: 304 KDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 185/297 (62%), Positives = 235/297 (79%), Gaps = 4/297 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F+ YMIRKAE VN ALD +V L P+ I +A+RYSLLAGGKRVRPLLCIA+CELVGGD
Sbjct: 64 FDFKLYMIRKAESVNAALDVSVPLLKPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGD 123
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
E+ AM AACA+EMIHT SLIHDDLP +DN + RR KP +H+V+GE A+LAGDALL+LA
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAF 183
Query: 182 EHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD---VSLKELEYIHV 237
EH+ V +G V+P++++RA+ E+ A+G GLVAG+ +D+ASE + V L+ LE+IH+
Sbjct: 184 EHMTVVSSGLVAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHL 243
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
HKTA LLEAA V G ++GGG E+E++R YARCIGLLFQVVDDILDVTKS+EELGKTAG
Sbjct: 244 HKTAALLEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAG 303
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
KD+ +GK TYP+L+G+E ++ A +L +A E+L F+ SKAAPL LA+YIA R N
Sbjct: 304 KDVMAGKLTYPRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 328 bits (841), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/305 (56%), Positives = 226/305 (74%), Gaps = 14/305 (4%)
Query: 64 FEEYMIRKAEQVNKALDEAVVL--------QPPVKIHKAMRYSLLAGGKRVRPLLCIASC 115
F YM KA+ +NKALD ++ L +P +++HKAMRY+LL GGKRVRP+LC+ +C
Sbjct: 32 FISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVAC 91
Query: 116 ELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDA 175
ELVGG ES AMPAACA+EMIH SLI DDLP +D+D RR KP +H+VFGE T+ILA +A
Sbjct: 92 ELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGEKTSILASNA 151
Query: 176 LLSLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASE-----GKDVSL 229
L SLA++ + + GV+ +RV+RA+ EM A+G EGLVAG+ D+A E +D L
Sbjct: 152 LRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDEL 211
Query: 230 KELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289
+ LE +HVHKTA L+EAA V GA++GGG+ E+ER+++YARC+GL+FQV+DD+LD TKSS
Sbjct: 212 RYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSS 271
Query: 290 EELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYI 349
EELGKTAGKDL +GK TYPK+MG++NA+ +A L +A E L F++ K PL LA+YI
Sbjct: 272 EELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYI 331
Query: 350 ASRQN 354
RQN
Sbjct: 332 VKRQN 336
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 327 bits (838), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 181/297 (60%), Positives = 234/297 (78%), Gaps = 4/297 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F+ YMIRKAE V+ AL+ +V LQ P+ I +A+RYSLLAGGKRVRPLLCIA+CELVGGD
Sbjct: 61 FDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGD 120
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
E+ AM AACA+EMIHT SLIHDDLP +D+ + RR KP +H+ FGE A+LAGDALL+LA
Sbjct: 121 EATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAGDALLALAF 180
Query: 182 EHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYIHV 237
EH+ G V+P+R++RA+ E+ A+G +GLVAG+ D+ S+G DV L+ LE+IH+
Sbjct: 181 EHMTFVSNGLVAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHL 240
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
HKTA LLEAA V GA++GGG E+E++R YARCIGLLFQVVDDILDVT+S++ELGKTAG
Sbjct: 241 HKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAG 300
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
KD+ +GK TYP+L+G+E ++ A +L +A E+L F++ KAAPL LA+YIA R N
Sbjct: 301 KDVMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSDKAAPLVALASYIACRHN 357
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/297 (59%), Positives = 234/297 (78%), Gaps = 4/297 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F F+ YMIRKAE V+ AL+ +V Q P+ I +A+RYSLLAGGKRVRPLLCIA+CELVGGD
Sbjct: 64 FDFKSYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGD 123
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
E+ AM AACA+EMIHT SLIHDDLP +D+ + RR KP +H+VFGE A+LAGDALL+LA
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAF 183
Query: 182 EHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG---KDVSLKELEYIHV 237
EH+ V +G V+P+R++R++ E+ A+G +GLVAG+ D+ S+G DV L+ LE+IH+
Sbjct: 184 EHMTVVSSGLVAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHL 243
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
HKTA LLEAA V GA+IGGG E++++R Y RCIGLLFQVVDDI+DVT+S+EELGKTAG
Sbjct: 244 HKTAALLEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAG 303
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
KD+ + K TYP+L+G+E ++ A +L +A E+L F+++K APL LA+YIA R N
Sbjct: 304 KDVMARKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/299 (48%), Positives = 203/299 (67%), Gaps = 3/299 (1%)
Query: 58 PLPT-FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCE 116
PL T F Y+ + E V L++++ P I+ ++RYSL AGGKR+RP+LC+ASCE
Sbjct: 3 PLQTNFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCE 62
Query: 117 LVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDAL 176
L GG A+P ACALEMIHTMSLIHDDLP +DND RR KP +H ++GE AILAGDAL
Sbjct: 63 LAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDAL 122
Query: 177 LSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYI 235
L+ A E +A V D +V+ IA++ ++ GLV G+ +D++SEGK D +L+ L +I
Sbjct: 123 LAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFI 182
Query: 236 HVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
H+HKT LLEAAV+ GA++ G ++ R YA+ IGL FQ++DD+LD+ + E+LGK+
Sbjct: 183 HIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKS 242
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
GKDL + KATYP G+E + A L+ +A EE+ YF+ +KA PL +A++I +R N
Sbjct: 243 IGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 171/261 (65%), Gaps = 2/261 (0%)
Query: 59 LPTFPFEEYMIRKAEQVNKALDEAV-VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
+ E+++ + + V AL + L+ P K+ KAM YSL AGGKR+RPLL +++
Sbjct: 1 MAQLSVEQFLNEQKQAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRA 60
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
+G D + +P ACA+EMIHT SLIHDDLP +DND+ RR KP +H+VFGE+ AILAGD LL
Sbjct: 61 LGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLL 120
Query: 178 SLALEHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIH 236
+ A + + ++ + P +R I + A G EG+VAG+ D+ EGK ++L ELEYIH
Sbjct: 121 TYAFQLITEIDDERIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIH 180
Query: 237 VHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTA 296
HKT K+L+ +V GA+IGG +A + + +A +GL FQ+ DDILD+ + E++GK
Sbjct: 181 RHKTGKMLQYSVHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPV 240
Query: 297 GKDLASGKATYPKLMGIENAK 317
G D ++ KATYP L+ + AK
Sbjct: 241 GSDQSNNKATYPALLSLAGAK 261
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 211 bits (537), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/264 (41%), Positives = 165/264 (62%), Gaps = 3/264 (1%)
Query: 90 KIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLD 149
++H+A+ YSL AGGKR+RPLL + + + +GG+ +P ALEMIHT SLIHDDLP +D
Sbjct: 30 RLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMD 89
Query: 150 NDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGV 209
ND+ RR K +H+ F E+TAILAGDALL+ A + + +N ++ + + I + +A G
Sbjct: 90 NDDYRRGKLTNHKRFDEATAILAGDALLTDAFQCI-LNTQ-LNAEIKLSLINLLSTASGS 147
Query: 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYA 269
G+V G+ +D+ E K ++L ELE IH+HKT +L+ AA+V +I N ++E++
Sbjct: 148 NGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQLNIIG 207
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
+ +GL+FQ+ DDILDV S E +GKT G DL + K+TY L+G+E +K + L + +
Sbjct: 208 KNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKLTETYD 267
Query: 330 ELAYFEASKAAPLYFLANYIASRQ 353
L + L L YI R
Sbjct: 268 ALKTLQPIN-DNLKTLITYIVERN 290
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 147/243 (60%), Gaps = 14/243 (5%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLA-GGKRVRPLLCIASCELVG 119
F Y ++N+ LDEA+ ++ P I++AMRYS+LA G KR P++C+A+CEL G
Sbjct: 44 NFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFG 103
Query: 120 GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
GD A P ACALEM+H SLIHDDLP +D+D RR KP++H V+G AILAGDAL L
Sbjct: 104 GDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPL 163
Query: 180 ALEHVAVNIAGVSPDRVVRA-----IAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEY 234
A +H+ ++ PD V RA I E+ +G G+ AG++VD+ EG L +
Sbjct: 164 AFQHI---VSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDL--EGGPFP---LSF 215
Query: 235 IHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGK 294
+ K + E + VCG ++GG E++ +R Y R +G+L+QVVDDI + K S + G
Sbjct: 216 VQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGA 275
Query: 295 TAG 297
G
Sbjct: 276 EKG 278
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 171/271 (63%), Gaps = 2/271 (0%)
Query: 85 LQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDD 144
L P + K+M YSL AGGKR+RPL+ +A G E +P CA+EMIHT SLIHDD
Sbjct: 27 LDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDD 86
Query: 145 LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG-VSPDRVVRAIAEM 203
LP +D+D+ RR KP +H+VFGE+TA+LAGD LL+ + + + +++ VS ++ +R + E+
Sbjct: 87 LPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKRLRLVNEL 146
Query: 204 CSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVE 263
SA G EG+V G+ D+ +E + V+L+ELE IH KTAKLL V+ GA++ ++E
Sbjct: 147 ISAAGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIE 206
Query: 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGEL 323
+R ++ IG+ FQ+ DDILD+ S E++GK G D + K+TYP L+ +E AK
Sbjct: 207 TLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGAKHKLDVH 266
Query: 324 LGQAIEELAYFEASKAAPLYFLANYIASRQN 354
+ +A + K LY L + IA+R +
Sbjct: 267 IKEAKRLIGGLSLQKDL-LYELCDLIAARDH 296
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 158/267 (59%), Gaps = 11/267 (4%)
Query: 93 KAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDE 152
+AM+Y+LL GGKRVRP L A+ +++G ++ AA A+E IH SLIHDDLP +D+D
Sbjct: 35 EAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDN 94
Query: 153 RRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGL 212
RR P H F E+TAILAGDAL S A E + +S ++ + I + GV+G+
Sbjct: 95 LRRGHPTCHIQFDEATAILAGDALQSFAFE-ILTKTPNISTEQKLALIQILAQGAGVQGM 153
Query: 213 VAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIG---GGNAIEVERVRNYA 269
G+ +D+ SE K +SL ELE IH +KT LL AA+ G + +E + + YA
Sbjct: 154 CLGQSLDLISEHKQISLSELELIHRNKTGALLIAALKLGFICSPHFTDKRLE-QSLTQYA 212
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
IGL FQV DDILD+ S E+GK G DL K+TYPKL+G+ AK A +L A+
Sbjct: 213 EAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDKSTYPKLLGLSGAKQKAQDLYQSALS 272
Query: 330 ELAY--FEASKAAPLYFLANYIASRQN 354
EL F+ + A LA +I +R++
Sbjct: 273 ELEKIPFDTTVRA----LAEFIITRKS 295
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 161/286 (56%), Gaps = 6/286 (2%)
Query: 73 EQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAAC 130
+Q N+AL + P + + M+Y L GGKR+RP L A+ + G + A
Sbjct: 12 KQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAA 71
Query: 131 ALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNIA 189
A+E IH SLIHDDLP +D+D+ RR P H FGE+ AILAGDAL +LA ++ ++
Sbjct: 72 AVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMP 131
Query: 190 GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVV 249
VS + I+E+ SA G+ G+ G+ +D+ +EGK V L LE IH HKT L+ AAV
Sbjct: 132 EVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVR 191
Query: 250 CGAVIGGGNAIEVERVRN-YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP 308
GA+ G V + YA IGL FQV DDILDV + LGK G D GK+TYP
Sbjct: 192 LGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYP 251
Query: 309 KLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASR 352
L+G+E A+ A +L+ A + L ++ + L LA+YI R
Sbjct: 252 ALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 156/275 (56%), Gaps = 10/275 (3%)
Query: 65 EEYMIRKAEQVNKALDEAVVLQPP--VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE 122
E +M A++V +AL + + ++ AMRY+ L GGKR R LLC+A+ L
Sbjct: 34 EIWMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPA 93
Query: 123 SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA-L 181
A+EM+H +L+HDDLP +D+D RR P H FGE+TAIL GDAL + A L
Sbjct: 94 HMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFL 153
Query: 182 EHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTA 241
++N G SP +VR +A+ SA EG G+ +D++ GK V L + +H K+
Sbjct: 154 TLASLNAPGDSPIALVRELAQAVSA---EGAAGGQAIDLSLVGKHVELDRIVAMHRMKSG 210
Query: 242 KLLEAAVVCGAVIG-GGNAIEVE---RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
L+ A+V GA+ G NA + +Y+ C GL QV+DDILDVT + LGKT G
Sbjct: 211 ALVRASVRMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPG 270
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELA 332
KD A+ K T +MG++ A+ FA +LL A E +A
Sbjct: 271 KDAAAQKPTCASIMGLQEARQFALDLLRDAGEAIA 305
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 158/286 (55%), Gaps = 11/286 (3%)
Query: 73 EQVNKALDEAVVLQPPVK---IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAA 129
++NK L E ++ + P + + +AM+YS L+GGKR+R L A+ E + + +
Sbjct: 12 NRINKKLFE-IIQELPFQDSVLFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVIS 70
Query: 130 CALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA-VNI 188
A+E++H+ SLIHDDLP +DND RR K + H +GE+ A+LAGDAL LA ++ N+
Sbjct: 71 AAVELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNM 130
Query: 189 AGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAV 248
GV ++ IAE +A+G G+ G+ +D+ E K +++ ELE I+++KTA L+ ++
Sbjct: 131 PGVHDSIRLKMIAEFSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSI 190
Query: 249 VCGAVIGGGNAIEVERVRN-YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY 307
+ EV + + ++ IGL FQ+ DDILD+ ++L K K TY
Sbjct: 191 RLAYFASNNFSKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKLESKRNK----TKNTY 246
Query: 308 PKLMGIENAKSFAGELLGQAIEELAYFEAS-KAAPLYFLANYIASR 352
P L+G++ +K EL +A L + + L L +I R
Sbjct: 247 PLLIGLKKSKIKIKELYKEAFFTLEILKKNFNVNILKLLTQFIMKR 292
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 153/299 (51%), Gaps = 43/299 (14%)
Query: 90 KIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLD 149
K++ A ++ L AGGKR+RP L + + L D +PAA A+E+IH +LIHDD+ +D
Sbjct: 34 KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MD 91
Query: 150 NDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGV 209
ND+ RR KP H V+GE AILAGD L + A E V+ V++ +++ C V
Sbjct: 92 NDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAHEVLKILSKAC----V 147
Query: 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYA 269
E + G+ +D+ E +++E + KT LLEA+V GAV+ N E E ++ YA
Sbjct: 148 E-VCEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYA 206
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKAT-----------------YPKLMG 312
+ IGL FQ+ DD+LD+ ++LGK G D+ GK T +++G
Sbjct: 207 KRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEILG 266
Query: 313 IENAKS---------------FAGELLGQAIEE----LAYFEASKAAPLYFLANYIASR 352
+N K +A EL+ Q EE L F + L LA++I SR
Sbjct: 267 NKNVKDEEIKEAIEILKPSIEYAKELMKQKTEEAKEYLKIFNKDRRKVLEDLADFIMSR 325
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 158/278 (56%), Gaps = 8/278 (2%)
Query: 70 RKAEQVNKALDEAVVLQPPVK--IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMP 127
R ++N+ L + P K + KAM+YS+ +G KR+R L ++ ++ + +
Sbjct: 9 RYKHRINQKLFYTLNQLPFQKSSLLKAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDV 68
Query: 128 AACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVN 187
+ A+E IH+ SLIHDDLP +DND RR K + H +GEST++LAGDAL SLA ++ +
Sbjct: 69 ISTAIEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGESTSLLAGDALQSLAFNILSNS 128
Query: 188 -IAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEA 246
+ VS + ++ I+E+ ++G G+ G+ +D+ +E KDV+L ELE I+++KT+ L+ +
Sbjct: 129 FMPNVSNLKRIKMISELSYSIGSSGMCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRS 188
Query: 247 AVVCGAVIGGGNAIEVERVRN-YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKA 305
AV + + + + ++ IGL FQ+ DDILD K S KT K + K
Sbjct: 189 AVRLVYFSSNNFSKSILSILDLFSISIGLAFQIQDDILDFKKDSV---KTDNKKIIK-KH 244
Query: 306 TYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLY 343
TYP ++G++ ++ +L ++ L + + P Y
Sbjct: 245 TYPLIIGLDESRKKIKQLHKKSFLALNSLKKKISIPTY 282
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 143/251 (56%), Gaps = 9/251 (3%)
Query: 68 MIRK-AEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAM 126
++RK +E ++ + E++ P + +A + + AGGK++RP L + S E VGGD A
Sbjct: 7 ILRKYSEMADERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAA 66
Query: 127 PAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAV 186
A A+E+IHT SLIHDD+ +D+DE RR +PA H ++GE AILAGD L S A E V
Sbjct: 67 GVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIR 124
Query: 187 NIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLE 245
N + + + C + G+ +D+ E + DV+ +E + KTA L+
Sbjct: 125 NGDSEMVKEALAVVVDSCVK-----ICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIA 179
Query: 246 AAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKA 305
AA GA++GGG+ E+ + +Y RCIGL FQ+ DD LDV E LGK G D+A GK
Sbjct: 180 AATKAGAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKM 239
Query: 306 TYPKLMGIENA 316
T + +E A
Sbjct: 240 TLMVVKALERA 250
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 150/276 (54%), Gaps = 12/276 (4%)
Query: 65 EEYMIRKAEQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE 122
E +M A++V +AL + + ++ AMRY+ L GGKR R LLC+A+ L
Sbjct: 34 EIWMQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPA 93
Query: 123 SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALE 182
A+EM+H +L+HDDLP +D+D RR P H FGE+TAIL GDAL +
Sbjct: 94 HILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQA---- 149
Query: 183 HVAVNIAGVSP--DRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKT 240
H + +A + D + + E+ A+ EG G+ +D++ GK V L + +H K
Sbjct: 150 HAFLTLASLDAPGDNRIALVRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKC 209
Query: 241 AKLLEAAVVCGAVIG----GGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTA 296
L+ A+V GA+ +A + +Y+ C GL QVVDDILD T + LGKT
Sbjct: 210 GALVRASVRMGALCAIAEDAADATLYCALDHYSACFGLALQVVDDILDATADTATLGKTP 269
Query: 297 GKDLASGKATYPKLMGIENAKSFAGELLGQAIEELA 332
GKD A+ K T +MG++ A+ FA +LL +A E +A
Sbjct: 270 GKDAAAQKPTCASIMGLQAARQFALDLLCEAGEAIA 305
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 147/252 (58%), Gaps = 11/252 (4%)
Query: 68 MIRKAEQV-NKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAM 126
++RK +V +K + E + P + KA + + AGGK++RP L + SCE VGG+ A
Sbjct: 7 ILRKYSEVADKRIMECISDITPDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAA 66
Query: 127 PAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAV 186
A A+E+IHT SLIHDD+ +D+DE RR +P+ H ++GE AILAGD L S A E V
Sbjct: 67 GVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIR 124
Query: 187 NIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLL 244
N +RV A+A + + + G+ +D+ E + + + E EY+ + KTA L+
Sbjct: 125 N---GDSERVKDALAVVVDS--CVKICEGQALDMGFEER-LDVTEDEYMEMIYKKTAALI 178
Query: 245 EAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGK 304
AA GA++GG + EVE + +Y + IGL FQ+ DD LDV E LGK G D+A GK
Sbjct: 179 AAATKAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGK 238
Query: 305 ATYPKLMGIENA 316
T + +E A
Sbjct: 239 MTLMVVKALEEA 250
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 12/240 (5%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
E++ K L+E + + P ++ +AM+Y L GKR+RPL +A +GG+E A+ +
Sbjct: 9 EKIEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGI 68
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAV--NIAG 190
E+IH SLIHDDLP +DND RR P H FGE+ A+LAGDALL+ E ++ N
Sbjct: 69 ELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRENYKT 128
Query: 191 VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVC 250
+S + ++ + G G+V G+ +DI ++L + V KT L EA +C
Sbjct: 129 LSCEEILEINKIIAQKAGSNGMVGGQVLDIK------GYEDLYEVSVKKTGALFEACFMC 182
Query: 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKL 310
GAV+ +++ + + R +GLLFQ+VDD LD E+LG+ +++ K Y +L
Sbjct: 183 GAVVAKRRE-KLKEMESIGRKVGLLFQMVDDYLDKDGFYEKLGECLKEEI---KKLYEEL 238
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 139/258 (53%), Gaps = 14/258 (5%)
Query: 77 KALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMP--AACALEM 134
KAL + + P + A+ Y + GG R+RP + + S L GD+ A+ AA ALE+
Sbjct: 13 KALSPEALGESPPLLAAALPYGVFPGGARIRPTILV-SVALACGDDCPAVTDAAAVALEL 71
Query: 135 IHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPD 194
+H SL+HDDLP DN + RR KP+ H+ + E A+LAGD+LL E V ++ V+PD
Sbjct: 72 MHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFE-VLADVGAVNPD 130
Query: 195 RVVRAIAEMCSAMGVE-GLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAV 253
R ++ I+++ G G+ AG+ + SE K +L H KT L AA GA+
Sbjct: 131 RALKLISKLGQLSGARGGICAGQAWE--SESK----VDLAAYHQAKTGALFIAATQMGAI 184
Query: 254 IGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGI 313
G E E + IG FQ+ DD+ D S+E +GK AG+D+A+ + K MGI
Sbjct: 185 AAG---YEAEPWFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDIANERPNAVKTMGI 241
Query: 314 ENAKSFAGELLGQAIEEL 331
E A+ ++L AI +
Sbjct: 242 EGARKHLQDVLAGAIASI 259
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 8/245 (3%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
F+ Y VN + + P K+++A + +GGKR+RPL+ S +L GG
Sbjct: 4 FDNYFNEIVNSVNDIIKSYISGDVP-KLYEASYHLFTSGGKRLRPLILTISSDLFGGQRE 62
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
A A A+E++HT +L+HDD+ +D D RR P H +G AILAGD L + A +
Sbjct: 63 RAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQL 120
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTA 241
+ + G+ + +++A ++ + + G+ VD+ E + + +KE EY+ + KTA
Sbjct: 121 LTQALRGLPSETIIKAFDIFTRSIII--ISEGQAVDMEFEDR-IDIKEQEYLDMISRKTA 177
Query: 242 KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
L A+ GA+I G N +V + ++ +G+ FQ+VDDIL +T +ELGK D+
Sbjct: 178 ALFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIR 237
Query: 302 SGKAT 306
GK T
Sbjct: 238 EGKKT 242
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 7/208 (3%)
Query: 101 AGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPAS 160
AGGKR+RPL+ ++S +L+GGD A AA A+E++H +L+HDD+ +DND RR P
Sbjct: 42 AGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTV 99
Query: 161 HEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDI 220
H +GE AILAGD L + A E + + G+ + +A + ++ +E + G+ +D+
Sbjct: 100 HVKWGEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITS--IEIISEGQAMDM 157
Query: 221 ASEGKDVSLKELEYIHV--HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQV 278
+ E + + + E EYI + KTA L + G +I N V+++ Y +G+ FQ+
Sbjct: 158 SFENR-LDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQI 216
Query: 279 VDDILDVTKSSEELGKTAGKDLASGKAT 306
VDDIL + +ELGK D+ GK T
Sbjct: 217 VDDILGIIGDEKELGKPIYSDIREGKKT 244
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 122/236 (51%), Gaps = 9/236 (3%)
Query: 103 GKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHE 162
GK +RP L + E G D A+P A ++E++H SL+HDDL +D DE RR +P
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 163 VFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS 222
++G++ A+LAGDA+LSLA E V ++ +RAI+E L+ G+ D A
Sbjct: 130 LWGDAMALLAGDAMLSLAHE-VLLDCDSPHVGAALRAISE-----ATRELIRGQAADTAF 183
Query: 223 EGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDD 281
E + DV+L E + KTA L+ A+ GA++ G E + Y R IGL FQ+VDD
Sbjct: 184 ESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDD 243
Query: 282 ILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEAS 337
+L + E GK DL S K T P + + S L ++E AS
Sbjct: 244 LLGIWGRPEITGKPVYSDLRSRKKTLPVTWTVAHGGSAGRRLAAWLVDETGSQTAS 299
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 122/236 (51%), Gaps = 9/236 (3%)
Query: 103 GKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHE 162
GK +RP L + E G D A+P A ++E++H SL+HDDL +D DE RR +P
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 163 VFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS 222
++G++ A+LAGDA+LSLA E V ++ +RAI+E L+ G+ D A
Sbjct: 130 LWGDAMALLAGDAMLSLAHE-VLLDCDSPHVGAALRAISE-----ATRELIRGQAADTAF 183
Query: 223 EGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDD 281
E + DV+L E + KTA L+ A+ GA++ G E + Y R IGL FQ+VDD
Sbjct: 184 ESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDD 243
Query: 282 ILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEAS 337
+L + E GK DL S K T P + + S L ++E AS
Sbjct: 244 LLGIWGRPEITGKPVYSDLRSRKKTLPVTWTVAHGGSAGRRLAAWLVDETGSQTAS 299
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 14/236 (5%)
Query: 97 YSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRS 156
Y + GGKR+RPL+ + + +G + S ++ A +E IHT SL+HDD+ +D + RR
Sbjct: 44 YIVQGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDV--VDESDMRRG 101
Query: 157 KPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGE 216
+ ++ FG + ++L GD + + A + VA ++ ++ M A V L GE
Sbjct: 102 RATANAEFGNAASVLVGDFIYTRAFQLVA-------QLESLKILSIMADATNV--LAEGE 152
Query: 217 FVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGL 274
+ + D E Y+ V KTA+L E A A++ GG + + +++Y R +G
Sbjct: 153 VQQLMNV-NDPETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGT 211
Query: 275 LFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330
FQ+VDD+LD + +++ LGK G DLA GK T P L + + + L+ +AIE+
Sbjct: 212 AFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQ 267
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 118/243 (48%), Gaps = 12/243 (4%)
Query: 88 PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE-SWAMPAACALEMIHTMSLIHDDLP 146
P K+ A+ Y++ GG R+RP L ++ G D + + AA ALE+IH SL+HDDLP
Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLP 83
Query: 147 FLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSA 206
D+ E RR KP H + E AIL GD+L+ + E V A P R ++ + +
Sbjct: 84 CFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFE-VLARAAADQPQRALQLVTALAVR 142
Query: 207 MGVE-GLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERV 265
G+ G+ AG+ + S+ L H KT L AA GA+ G E E
Sbjct: 143 TGMPMGICAGQGWESESQ------INLSAYHRAKTGALFIAATQMGAIAAG---YEAEPW 193
Query: 266 RNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLG 325
IG FQV DD+ D +E LGK AG+D + + G+E A ++LG
Sbjct: 194 EELGARIGEAFQVADDLRDALCDAETLGKPAGQDEIHARPNAVREYGVEGAAKRLKDILG 253
Query: 326 QAI 328
AI
Sbjct: 254 GAI 256
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 138/241 (57%), Gaps = 15/241 (6%)
Query: 71 KAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAAC 130
++ V+ A+DE + + P +++KA RY + AGGKR+RP + I + E VG + +PAA
Sbjct: 13 RSSHVDAAIDELLPVTRPEELYKASRYLVDAGGKRLRPAVLILAAEAVGSNLRSVLPAAV 72
Query: 131 ALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG 190
A+E++H +LIH +D D+ RR PA H +GE+ AILAGD L S A E ++
Sbjct: 73 AVELVHNFTLIH--DDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFE--ILSKVE 128
Query: 191 VSPDRVVR---AIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLE 245
P RV++ +++ C+ + G+++D+ E + + E EY+ + KT+ L
Sbjct: 129 NEPVRVLKCMDVLSKTCTE-----ICEGQWLDMDFETRK-KVTESEYLEMVEKKTSVLYA 182
Query: 246 AAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKA 305
AA GA++GG + E + Y R IG+ FQ+ DD+LD+T E LGK G DL GK
Sbjct: 183 AAAKIGALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKY 242
Query: 306 T 306
T
Sbjct: 243 T 243
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 127/242 (52%), Gaps = 8/242 (3%)
Query: 94 AMRYSLLAGGKRVRPLLCIASCELV--GGDESWAMPAACALEMIHTMSLIHDDLPFLDND 151
AMR ++A GKR+RPLL + + + G + ACA+E+ HT SL+ DD+P +DN
Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNA 101
Query: 152 ERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEG 211
E RR +P +H+ FGES AILA LLS A +A + +R +A+ E+ +A+GV+G
Sbjct: 102 ELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAAT-GDLPGERRAQAVNELSTAVGVQG 160
Query: 212 LVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARC 271
LV G+F D+ D + + + KT L A + A+ + E + +A
Sbjct: 161 LVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAFALD 220
Query: 272 IGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEEL 331
G FQ++DD+ D E GK KD +GK+T +G + A+ E + A + L
Sbjct: 221 FGQAFQLLDDLRD---DHPETGKDRNKD--AGKSTLVNRLGADAARQKLREHIDSADKHL 275
Query: 332 AY 333
+
Sbjct: 276 TF 277
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 12/243 (4%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDN 150
I+KA + L +GGKRVRP+ + S L + + A +LE++H SL+HDD ++DN
Sbjct: 32 INKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDD--YIDN 89
Query: 151 DERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVE 210
+ RR + H F + TAI G LL+ AL+++A + I E+C
Sbjct: 90 SDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVC------ 143
Query: 211 GLVAGEFVDIASE-GKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYA 269
GEF +A VS KTA L+EA+ GA+ + ++ +
Sbjct: 144 ---FGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFG 200
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
CIG+ +Q++DDILD T LGK G D+ +G TYP + I N K + L ++
Sbjct: 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVK 260
Query: 330 ELA 332
L
Sbjct: 261 HLT 263
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 135/249 (54%), Gaps = 19/249 (7%)
Query: 74 QVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCI----ASCELVGGDE--SWAMP 127
++N L V + PV + A + AGGKR+RP L A+ EL G E +
Sbjct: 94 KLNNNLKSLVGAENPVLVSAAEQI-FGAGGKRLRPALVFLVSRATAELAGLLELTTEHQR 152
Query: 128 AACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVN 187
A +EMIHT SLIHDD+ +D+ RR K H+++G A+LAGD + + + +A N
Sbjct: 153 LAEIIEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA-N 209
Query: 188 IAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEA 246
+ + V++ I+++ ++ +GE ++ DV+L + +KTA LL +
Sbjct: 210 LENI---EVIKLISQV-----IKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLAS 261
Query: 247 AVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKAT 306
+ A+ G + E++ Y R +GL FQVVDDILD T+S+E+LGK AG DLA G T
Sbjct: 262 STRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLT 321
Query: 307 YPKLMGIEN 315
P + +++
Sbjct: 322 APVIFALQD 330
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 136/259 (52%), Gaps = 17/259 (6%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGG-KRVRPLLCIASCELVGGDESWAMPAACALE 133
VN A+ E L V++ + Y +++GG KR+RP++ + + VG + + + A +E
Sbjct: 17 VNAAILEQ--LNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIE 74
Query: 134 MIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSP 193
IHT +L+HDD+ +D + RR K ++ FG + ++L GD + + A + + +
Sbjct: 75 FIHTATLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQM----MTSLGS 128
Query: 194 DRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVCG 251
+V+ ++E V + GE + + + D + E Y+ V KTA+L EAA C
Sbjct: 129 LKVLEVMSE-----AVNVIAEGEVLQLMNV-NDPDITEENYMRVIYSKTARLFEAAAQCS 182
Query: 252 AVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM 311
++ G E + +++Y R +G FQ++DD+LD E+LGK G DL GK T P L
Sbjct: 183 GILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLH 242
Query: 312 GIENAKSFAGELLGQAIEE 330
+ + +++ AIE+
Sbjct: 243 AMHHGTPEQAQMIRTAIEQ 261
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 136/259 (52%), Gaps = 17/259 (6%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGG-KRVRPLLCIASCELVGGDESWAMPAACALE 133
VN A+ E L V++ + Y +++GG KR+RP++ + + VG + + + A +E
Sbjct: 17 VNAAILEQ--LNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIE 74
Query: 134 MIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSP 193
IHT +L+HDD+ +D + RR K ++ FG + ++L GD + + A + + +
Sbjct: 75 FIHTATLLHDDV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQM----MTSLGS 128
Query: 194 DRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVCG 251
+V+ ++E V + GE + + + D + E Y+ V KTA+L EAA C
Sbjct: 129 LKVLEVMSE-----AVNVIAEGEVLQLMNV-NDPDITEENYMRVIYSKTARLFEAAAQCS 182
Query: 252 AVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM 311
++ G E + +++Y R +G FQ++DD+LD E+LGK G DL GK T P L
Sbjct: 183 GILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLH 242
Query: 312 GIENAKSFAGELLGQAIEE 330
+ + +++ AIE+
Sbjct: 243 AMHHGTPEQAQMIRTAIEQ 261
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 19/249 (7%)
Query: 74 QVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCI----ASCELVGGDE--SWAMP 127
++N L V + PV + A + AGGKR+RP L A+ EL G E +
Sbjct: 63 KLNNNLKSLVGAENPVLVSAAEQI-FGAGGKRLRPALVFLVSRATAELAGLLELTTEHQR 121
Query: 128 AACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVN 187
A +EMIHT SLIHDD+ +D+ RR K H+++G A+LAGD + + + +A N
Sbjct: 122 LAEIIEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA-N 178
Query: 188 IAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEA 246
+ + V++ I+++ ++ +GE ++ D++L + +KTA L+ A
Sbjct: 179 LENI---EVIKLISQV-----IKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAA 230
Query: 247 AVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKAT 306
+ A+ G + E++ Y R +GL FQVVDDILD T+S+E+LGK AG DLA G T
Sbjct: 231 STRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLT 290
Query: 307 YPKLMGIEN 315
P + +++
Sbjct: 291 APVIFALQD 299
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 135/259 (52%), Gaps = 23/259 (8%)
Query: 65 EEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG----- 119
E + + E VN+A+ E + +Q P +++ A RY L AGGKR+RP + + + E +
Sbjct: 8 ESAIAERREIVNEAVSEQLPVQKPERLYSASRYLLDAGGKRLRPTILLLAAESLADVEPL 67
Query: 120 -----------GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGEST 168
GDE + AA ++E+I + +LIH +D+D+ RR PA H + T
Sbjct: 68 SADYRQFPSLPGDEVDVLSAAVSIEVIQSFTLIH--DDIMDDDDLRRGVPAVHREYDLET 125
Query: 169 AILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DV 227
AILAGD L S A E++ G +R V A+ E+ A + G+ +D+ E + DV
Sbjct: 126 AILAGDTLYSKAFEYMLDT--GAPAERSVEALDEL--ATTCTEICEGQALDVDFENRSDV 181
Query: 228 SLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTK 287
+ +E + KTA L AA A++ G + VE + Y IG FQ+ DD+LD+T
Sbjct: 182 TTEEYLEMVEFKTAVLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTA 241
Query: 288 SSEELGKTAGKDLASGKAT 306
S+ELGK G DL K T
Sbjct: 242 PSDELGKQRGSDLVENKRT 260
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 138/265 (52%), Gaps = 21/265 (7%)
Query: 58 PLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRP----LLCIA 113
P+ E + + +N L V + PV I A + AGGKR+RP L+ A
Sbjct: 81 PISLVTLFELVAVDLQTLNDNLLSIVGAENPVLISAAEQI-FGAGGKRMRPGLVFLVSHA 139
Query: 114 SCELVGGDESWAMPAACA--LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAIL 171
+ EL G E A +EMIHT SLIHDD+ LD + RR K HE+FG A+L
Sbjct: 140 TAELAGLKELTTEHRRLAEIIEMIHTASLIHDDV--LDESDMRRGKETVHELFGTRVAVL 197
Query: 172 AGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKE 231
AGD + + A ++A N+ + V++ I+++ ++ +GE + AS D K
Sbjct: 198 AGDFMFAQASWYLA-NLENL---EVIKLISQV-----IKDFASGE-IKQASSLFDCDTKL 247
Query: 232 LEYI--HVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289
EY+ +KTA L+ A+ A+ E++ + + +GL FQ+VDDILD T+S+
Sbjct: 248 DEYLLKSFYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQST 307
Query: 290 EELGKTAGKDLASGKATYPKLMGIE 314
E+LGK AG DLA G T P + +E
Sbjct: 308 EQLGKPAGSDLAKGNLTAPVIFALE 332
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 138/248 (55%), Gaps = 13/248 (5%)
Query: 72 AEQVNKALDEAVVLQPPVK-----IHKAMRYSLLAGGKRVRPLLCIASCELVGG--DESW 124
AEQ+ +D + PV+ + AMR LA GKR+RP+L + + +G
Sbjct: 16 AEQLLADIDRRLDQLLPVEGERDVVGAAMREGALAPGKRIRPMLLLLTARDLGCAVSHDG 75
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV 184
+ ACA+EM+H SLI DD+P +D+ + RR +P H +GE AILA ALLS A +
Sbjct: 76 LLDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVI 135
Query: 185 AVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLL 244
A + G++P RA++E+ +A+G++GLV G+F D++ K S + + + KT+ L
Sbjct: 136 A-DADGLTPLAKNRAVSELSNAIGMQGLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLF 194
Query: 245 EAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGK 304
A++ +++ ++ + + ++ +G FQ++DD+ T + GK + +D +GK
Sbjct: 195 CASMQMASIVANASSEARDCLHRFSLDLGQAFQLLDDL---TDGMTDTGKDSNQD--AGK 249
Query: 305 ATYPKLMG 312
+T L+G
Sbjct: 250 STLVNLLG 257
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 58 PLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRP----LLCIA 113
P+ E + +++N L V + PV I A + AGGKR+RP L+ A
Sbjct: 92 PISLETLFEVVADDLQRLNDNLLSIVGAENPVLISAAEQI-FSAGGKRMRPGLVFLVSRA 150
Query: 114 SCELVGGDESWAMPAACA--LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAIL 171
+ EL G E +EMIHT SLIHDD+ LD + RR + HE+FG A+L
Sbjct: 151 TAELAGLKELTVEHRRLGEIIEMIHTASLIHDDV--LDESDMRRGRETVHELFGTRVAVL 208
Query: 172 AGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLK 230
AGD + + A ++A N+ + V++ I+++ ++ +GE +S DV L
Sbjct: 209 AGDFMFAQASWYLA-NLENLE---VIKLISQV-----IKDFASGEIKQASSLFDCDVKLD 259
Query: 231 ELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSE 290
+ +KTA L+ A+ A+ + E++ + + +GL FQVVDDILD T+S+E
Sbjct: 260 DYMLKSYYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTE 319
Query: 291 ELGKTAGKDLASGKATYPKLMGIEN 315
+LGK A DLA G T P + +EN
Sbjct: 320 QLGKPAANDLAKGNITAPVIFALEN 344
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 22/225 (9%)
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
E+IHT SL+HDD+ +D+ E RR P+++ FG A+LAGD LL A +V +A +
Sbjct: 197 ELIHTASLLHDDV--IDHSESRRGAPSANLEFGNKMAVLAGDFLLGRA----SVALARLR 250
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD-----VSLKELEYIHVH---KTAKLL 244
VV +A + + LV GEF+ + + +D S + L Y KTA L+
Sbjct: 251 HAEVVELLATV-----IANLVEGEFMQLKNTARDEKNPKWSEETLTYYLQKTYLKTASLI 305
Query: 245 EAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGK 304
+ A++GG +A V+ Y + +GL FQ+VDD+LD T+S +ELGK AG DL G
Sbjct: 306 SKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGL 365
Query: 305 ATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYI 349
AT P L + G L+G+ E+ +A++A L +N I
Sbjct: 366 ATAPLLFAWKTMPEL-GPLVGRKFEKEG--DAARARELVLQSNGI 407
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 14/235 (5%)
Query: 96 RYSLLAGGKRVRPLLCIASCELVG-GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERR 154
++ + AGGKR+RP++C+ + G + A A +EM+HT +L+HDD+ +D R
Sbjct: 40 KHVVEAGGKRMRPIMCLLAAYACGETNLKHAQKLAAIIEMLHTATLVHDDV--VDESGLR 97
Query: 155 RSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVA 214
R +P ++ + TA+L GD L++ A + + V D ++ + + + G +
Sbjct: 98 RGRPTANATWNNQTAVLVGDFLIARAFDLL------VDLDNMI-LLKDFST--GTCEIAE 148
Query: 215 GEFVDIASEGKDVSLKELEYIHVH-KTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIG 273
GE + + ++ + + +++ +H KT++L E A GA I G E +R +A G
Sbjct: 149 GEVLQLQAQHQPDTTEDIYLQIIHGKTSRLFELATE-GAAILAGKPEYREPLRRFAGHFG 207
Query: 274 LLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328
FQ++DDILD T ++ LGK G DL GK T P + ++N + +L+ ++I
Sbjct: 208 NAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLIRRSI 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,214,218
Number of Sequences: 539616
Number of extensions: 5276068
Number of successful extensions: 14600
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 14349
Number of HSP's gapped (non-prelim): 126
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)