Query 037716
Match_columns 354
No_of_seqs 233 out of 1514
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10581 geranyltranstransfera 100.0 2.4E-67 5.3E-72 502.9 34.0 293 62-354 1-299 (299)
2 COG0142 IspA Geranylgeranyl py 100.0 9.3E-63 2E-67 476.2 32.8 283 63-354 2-322 (322)
3 KOG0776 Geranylgeranyl pyropho 100.0 5E-62 1.1E-66 468.3 29.0 289 60-352 63-384 (384)
4 TIGR02748 GerC3_HepT heptapren 100.0 2.3E-61 5E-66 466.3 32.4 280 63-354 4-319 (319)
5 TIGR02749 prenyl_cyano solanes 100.0 3.5E-61 7.6E-66 465.2 32.4 280 63-354 5-322 (322)
6 CHL00151 preA prenyl transfera 100.0 2.6E-61 5.7E-66 466.6 31.4 282 61-354 4-323 (323)
7 PRK10888 octaprenyl diphosphat 100.0 3.4E-61 7.4E-66 465.3 32.0 279 64-354 6-323 (323)
8 PLN02890 geranyl diphosphate s 100.0 4.8E-61 1E-65 475.1 33.5 282 61-354 81-422 (422)
9 PLN02857 octaprenyl-diphosphat 100.0 9.2E-61 2E-65 473.3 30.5 281 62-354 95-416 (416)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 2.5E-56 5.4E-61 419.8 29.1 253 89-352 4-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 5.8E-55 1.3E-59 410.7 21.7 235 92-330 2-236 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1.4E-41 3.1E-46 314.0 27.1 231 106-352 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 4.6E-36 1E-40 268.1 18.8 233 89-336 21-291 (322)
14 KOG0711 Polyprenyl synthetase 100.0 8.7E-35 1.9E-39 271.0 18.7 220 89-316 38-270 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 5.6E-20 1.2E-24 166.3 26.4 190 126-335 13-224 (243)
16 PF07307 HEPPP_synt_1: Heptapr 96.8 0.02 4.3E-07 52.4 12.1 108 121-246 31-139 (212)
17 cd00683 Trans_IPPS_HH Trans-Is 96.7 0.17 3.6E-06 47.7 18.0 111 210-338 96-228 (265)
18 PLN02632 phytoene synthase 96.6 0.19 4E-06 49.3 17.9 115 210-339 143-281 (334)
19 TIGR03465 HpnD squalene syntha 96.4 0.6 1.3E-05 44.0 19.4 108 210-336 88-217 (266)
20 TIGR01559 squal_synth farnesyl 96.3 0.27 5.8E-06 48.3 17.1 118 210-339 111-251 (336)
21 TIGR03464 HpnC squalene syntha 95.6 0.3 6.5E-06 46.1 13.3 109 210-337 89-219 (266)
22 PF00494 SQS_PSY: Squalene/phy 94.7 0.7 1.5E-05 43.3 13.1 110 210-336 94-227 (267)
23 cd00687 Terpene_cyclase_nonpla 91.7 12 0.00026 35.5 16.4 110 210-331 139-261 (303)
24 cd00685 Trans_IPPS_HT Trans-Is 84.9 15 0.00032 34.4 11.7 68 256-335 34-102 (259)
25 TIGR02748 GerC3_HepT heptapren 83.6 12 0.00026 36.3 10.8 71 253-335 56-126 (319)
26 PRK10888 octaprenyl diphosphat 83.2 8.2 0.00018 37.6 9.4 72 251-334 55-126 (323)
27 PF00348 polyprenyl_synt: Poly 82.9 12 0.00026 35.0 10.2 74 250-335 23-96 (260)
28 COG1562 ERG9 Phytoene/squalene 81.3 29 0.00064 33.3 12.2 110 210-337 106-237 (288)
29 TIGR02749 prenyl_cyano solanes 73.3 26 0.00056 34.1 9.5 63 260-334 67-129 (322)
30 PRK10581 geranyltranstransfera 70.6 41 0.0009 32.3 10.2 70 253-334 57-128 (299)
31 PF03936 Terpene_synth_C: Terp 70.2 88 0.0019 28.6 13.7 110 210-331 147-269 (270)
32 CHL00151 preA prenyl transfera 66.6 29 0.00064 33.7 8.3 59 264-334 72-130 (323)
33 PRK12872 ubiA prenyltransferas 66.0 22 0.00048 33.6 7.2 39 271-320 172-210 (285)
34 cd00684 Terpene_cyclase_plant_ 65.6 1.2E+02 0.0026 31.8 13.1 112 210-334 366-491 (542)
35 COG0142 IspA Geranylgeranyl py 64.3 15 0.00033 35.7 5.9 61 264-336 70-130 (322)
36 PRK12882 ubiA prenyltransferas 63.3 1.3E+02 0.0029 28.2 16.7 56 128-185 43-101 (276)
37 PRK13591 ubiA prenyltransferas 63.1 1.5E+02 0.0033 28.8 14.6 39 274-323 193-231 (307)
38 cd00867 Trans_IPPS Trans-Isopr 62.4 95 0.0021 28.0 10.5 38 248-285 6-43 (236)
39 PRK12884 ubiA prenyltransferas 60.8 1.5E+02 0.0032 27.8 18.4 159 127-319 41-203 (279)
40 PF06783 UPF0239: Uncharacteri 60.6 12 0.00025 29.2 3.3 23 258-280 14-36 (85)
41 PRK13105 ubiA prenyltransferas 57.4 59 0.0013 31.1 8.4 42 272-324 172-213 (282)
42 PLN00012 chlorophyll synthetas 55.4 32 0.00068 34.4 6.4 41 270-321 262-302 (375)
43 TIGR01474 ubiA_proteo 4-hydrox 53.9 2E+02 0.0043 27.2 14.4 56 128-185 45-105 (281)
44 PLN02890 geranyl diphosphate s 49.8 1.1E+02 0.0023 31.2 9.3 60 263-334 164-223 (422)
45 PRK12878 ubiA 4-hydroxybenzoat 48.5 2.6E+02 0.0057 27.0 13.3 56 128-185 77-137 (314)
46 PRK09573 (S)-2,3-di-O-geranylg 45.4 2.7E+02 0.0058 26.2 18.1 55 128-184 42-99 (279)
47 PLN02857 octaprenyl-diphosphat 44.6 55 0.0012 33.2 6.2 44 260-315 161-204 (416)
48 PRK13595 ubiA prenyltransferas 42.9 1.8E+02 0.0039 28.1 9.1 75 244-331 155-229 (292)
49 PRK07566 bacteriochlorophyll/c 42.6 3.2E+02 0.0069 26.3 15.9 51 131-183 73-126 (314)
50 cd00868 Terpene_cyclase_C1 Ter 39.1 3.1E+02 0.0067 25.2 22.0 112 210-334 132-257 (284)
51 PRK12392 bacteriochlorophyll c 38.2 3.9E+02 0.0085 26.1 13.4 46 265-321 185-230 (331)
52 TIGR01475 ubiA_other putative 30.9 1.9E+02 0.0041 27.3 7.3 48 128-177 41-93 (282)
53 KOG0776 Geranylgeranyl pyropho 29.7 3.1E+02 0.0068 27.5 8.6 66 257-334 125-192 (384)
54 PRK13105 ubiA prenyltransferas 29.6 1.8E+02 0.0039 27.8 6.8 60 125-185 162-221 (282)
55 TIGR01476 chlor_syn_BchG bacte 29.4 32 0.0007 32.6 1.7 39 273-322 174-212 (283)
56 PRK12887 ubiA tocopherol phyty 27.9 1.5E+02 0.0032 28.7 6.1 44 268-322 190-233 (308)
57 PLN02878 homogentisate phytylt 27.6 1E+02 0.0022 29.6 4.7 50 268-328 164-213 (280)
58 TIGR01476 chlor_syn_BchG bacte 26.4 2.9E+02 0.0062 26.0 7.7 48 128-176 166-213 (283)
59 PRK12848 ubiA 4-hydroxybenzoat 25.9 5.6E+02 0.012 24.1 15.1 53 130-184 49-106 (282)
60 TIGR02056 ChlG chlorophyll syn 25.7 6E+02 0.013 24.3 15.2 52 130-183 61-115 (306)
61 PF06304 DUF1048: Protein of u 23.4 85 0.0018 25.4 2.9 22 274-295 45-66 (103)
62 PRK12875 ubiA prenyltransferas 22.3 88 0.0019 29.9 3.3 39 271-320 176-214 (282)
63 PRK12875 ubiA prenyltransferas 20.8 2.8E+02 0.006 26.5 6.4 39 133-172 175-213 (282)
64 COG2096 cob(I)alamin adenosylt 20.4 6.3E+02 0.014 22.7 8.2 16 273-288 59-74 (184)
No 1
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=2.4e-67 Score=502.90 Aligned_cols=293 Identities=41% Similarity=0.609 Sum_probs=266.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMS 139 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 139 (354)
++|..+++.....|++.|++.+... .+..+.++++|++..||||+||.|++++++++|++.+...++|++|||||+||
T Consensus 1 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aS 80 (299)
T PRK10581 1 MDFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4678889899999999999998652 25569999999999999999999999999999998888999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
|||||||+||+|++|||+||+|.+||++.|||+||||++.|++.+++... ...+....+++.+++++.|..+++.||.+
T Consensus 81 LiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~l 160 (299)
T PRK10581 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_pred HHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHH
Confidence 99999999999999999999999999999999999999999999987532 22334566788888887666889999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGN-AIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~-~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
|+.+.....+.++|.+|+.+|||+||++||.+|++++|.+ ++.++.+++||.++|+||||+||++|++++++.+||+.|
T Consensus 161 d~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g 240 (299)
T PRK10581 161 DLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_pred HHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcc
Confidence 9998776689999999999999999999999999999976 457899999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCC-CC-HHHHHHHHHHHHhccC
Q 037716 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEA-SK-AAPLYFLANYIASRQN 354 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~-~~-~~~L~~l~~~~~~R~~ 354 (354)
+|+++||+|||+++++++|++.++++.++|++.|+.++. +. ++.|..|++|+++|++
T Consensus 241 ~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999954 33 5789999999999975
No 2
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.3e-63 Score=476.21 Aligned_cols=283 Identities=42% Similarity=0.627 Sum_probs=257.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCch----hhhhHHHHHHHHHHH
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES----WAMPAACALEMIHTM 138 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~----~~~~lA~avEliH~a 138 (354)
.+..++....+.|++.|.+.++...|+.+.+++.|++..||||+||++++++++++|.+.. .+..+|++|||||++
T Consensus 2 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~aaavEliH~~ 81 (322)
T COG0142 2 DLLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTA 81 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHH
Confidence 4667888999999999999998445667999999999999999999999999999985443 569999999999999
Q ss_pred HhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 139 SLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 139 sLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
||||||| ||+|++|||+||+|.+||+..||++||+|++.||+++++.... ...++..++.++ .+|+.||.+
T Consensus 82 SLiHDDv--mD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~-----~~~~~~~~~~~~--~~~~~GQ~l 152 (322)
T COG0142 82 SLIHDDL--MDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSE-----ALEAIKALAEAI--NGLCGGQAL 152 (322)
T ss_pred HHHHhhc--ccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCch-----hHHHHHHHHHHH--HHHHHhHHH
Confidence 9999997 9999999999999999999999999999999999999986432 234555566666 899999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccch
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~ 298 (354)
|+.+..+.+++++|.+|+++|||+||+++|++|+++++++++..+.++.||+++|+||||+||++|++++++.+||+.|+
T Consensus 153 Dl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~ 232 (322)
T COG0142 153 DLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGS 232 (322)
T ss_pred HHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcch
Confidence 99998877999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHhHHHH---------------------------------HHHHHHHHHHHHHHhhccC-CCCHHHHHH
Q 037716 299 DLASGKATYPKLMGIENA---------------------------------KSFAGELLGQAIEELAYFE-ASKAAPLYF 344 (354)
Q Consensus 299 Dl~~gk~T~p~l~~le~a---------------------------------~~~~~~~~~~A~~~L~~l~-~~~~~~L~~ 344 (354)
|+++||+|||++++++.+ .++++.|.++|++.|+.++ +..++.|..
T Consensus 233 Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~ 312 (322)
T COG0142 233 DLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLE 312 (322)
T ss_pred HHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999988744 4468999999999999997 356799999
Q ss_pred HHHHHHhccC
Q 037716 345 LANYIASRQN 354 (354)
Q Consensus 345 l~~~~~~R~~ 354 (354)
+++|+++|.+
T Consensus 313 la~~i~~R~~ 322 (322)
T COG0142 313 LADFIIKRKY 322 (322)
T ss_pred HHHHHHhccC
Confidence 9999999974
No 3
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-62 Score=468.32 Aligned_cols=289 Identities=51% Similarity=0.717 Sum_probs=266.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHhHhCCCccchHHHHHHHHHHhC-CCchhhhhHHHHHHHHHH
Q 037716 60 PTFPFEEYMIRKAEQVNKALDEAVVLQ-PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG-GDESWAMPAACALEMIHT 137 (354)
Q Consensus 60 ~~~~~~~~l~~~~~~i~~~L~~~~~~~-~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g-~~~~~~~~lA~avEliH~ 137 (354)
..+++..|+....+.++..+...++.. +|..+.++++|.+..+|||+||.+|+++|+++| |....++++|+++||||+
T Consensus 63 ~~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~g~~~~q~~~A~i~EMIHt 142 (384)
T KOG0776|consen 63 LLFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAGGKRVRPLLCLAACELVGSGDESSQRSLAEIVEMIHT 142 (384)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhcccccCchhhhhHHHhccccccHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987 788899999999999999999999999999999 999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 037716 138 MSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEF 217 (354)
Q Consensus 138 asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~ 217 (354)
+||||||+||||++++|||+|+.|+.||+++|||+||||+++|++.++.+.+....+.+.++|.++++..|......||.
T Consensus 143 aSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~ 222 (384)
T KOG0776|consen 143 ASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEG 222 (384)
T ss_pred HHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999998877666778888888877776666666665
Q ss_pred hhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 218 VDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 218 lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
+|... ..+++|++++.+|||+|++.+|++|++++|.++++++.+++||+++|++||+.||++|++..++++||+.|
T Consensus 223 ~d~~~----~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag 298 (384)
T KOG0776|consen 223 LDLDD----VGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAG 298 (384)
T ss_pred cccCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchh
Confidence 55543 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHH------------------------------hHHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Q 037716 298 KDLASGKATYPKLM------------------------------GIENAKSFAGELLGQAIEELAYFE-ASKAAPLYFLA 346 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~------------------------------~le~a~~~~~~~~~~A~~~L~~l~-~~~~~~L~~l~ 346 (354)
.|+..|+.|+|+++ ++..|+.++++|.++|++.|+.|| ++.++.|++|+
T Consensus 299 ~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~~l~ 378 (384)
T KOG0776|consen 299 KDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVPGVALAKYLARRHNNKALEALQSLPRSEARSALENLV 378 (384)
T ss_pred hhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999988 456678889999999999999995 45679999999
Q ss_pred HHHHhc
Q 037716 347 NYIASR 352 (354)
Q Consensus 347 ~~~~~R 352 (354)
.++.+|
T Consensus 379 ~~~~~r 384 (384)
T KOG0776|consen 379 LAVLTR 384 (384)
T ss_pred HHHhcC
Confidence 999877
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=2.3e-61 Score=466.26 Aligned_cols=280 Identities=31% Similarity=0.463 Sum_probs=253.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhh
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIH 142 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIh 142 (354)
++..++++.++.|++.|++.+....| .+.+++.|++..||||+||.|++++++++|++.+.++++|++|||||+|||||
T Consensus 4 ~~~~~~~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKriRp~L~ll~~~~~~~~~~~~~~~A~aiEliH~asLiH 82 (319)
T TIGR02748 4 DIYSFLQKDIDSIEKELEKAVQAEHP-VLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVH 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888899999999999876444 58999999999999999999999999998888888999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 037716 143 DDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS 222 (354)
Q Consensus 143 DDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~ 222 (354)
||| ||+|++|||+||+|.+||+++|||+||||+++|++.++++.. . +++..+++++ .+++.||.+|+.+
T Consensus 83 DDI--~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~Gq~~~~~~ 151 (319)
T TIGR02748 83 DDV--IDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKD----P---RAHQILSHTI--VEVCRGEIEQIKD 151 (319)
T ss_pred ccc--cCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCc----H---HHHHHHHHHH--HHHHHHHHHHHHh
Confidence 997 999999999999999999999999999999999999987522 2 3445566666 7899999999987
Q ss_pred cCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh
Q 037716 223 EGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301 (354)
Q Consensus 223 ~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~ 301 (354)
..+ ..++++|..++.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++|++++++.+|||.++|++
T Consensus 152 ~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~ 231 (319)
T TIGR02748 152 KYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLL 231 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHh
Confidence 643 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHh----------------------------------HHHHHHHHHHHHHHHHHHhhccCCC-CHHHHHHHH
Q 037716 302 SGKATYPKLMG----------------------------------IENAKSFAGELLGQAIEELAYFEAS-KAAPLYFLA 346 (354)
Q Consensus 302 ~gk~T~p~l~~----------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~ 346 (354)
+||+|+|++++ +++|+++++++.++|.+.|+.||.. .++.|..++
T Consensus 232 ~gk~Tlp~l~al~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~ 311 (319)
T TIGR02748 232 QGNVTLPVLYAMEDPFLKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIA 311 (319)
T ss_pred CCCchHHHHHHhcCcchhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999985 4568899999999999999999654 468899999
Q ss_pred HHHHhccC
Q 037716 347 NYIASRQN 354 (354)
Q Consensus 347 ~~~~~R~~ 354 (354)
+|+.+|++
T Consensus 312 ~~~~~R~~ 319 (319)
T TIGR02748 312 KYIGKRKY 319 (319)
T ss_pred HHHHhccC
Confidence 99999974
No 5
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=3.5e-61 Score=465.24 Aligned_cols=280 Identities=30% Similarity=0.395 Sum_probs=252.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCC---chhhhhHHHHHHHHHHHH
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD---ESWAMPAACALEMIHTMS 139 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~---~~~~~~lA~avEliH~as 139 (354)
++.+++...+..|++.+.+.+....| .+.++++|++..||||+||++++++++++|+. .+..+.+|+++||||+||
T Consensus 5 ~~~~~~~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~~~~~~~~~~~~A~avEliH~as 83 (322)
T TIGR02749 5 SLFAPVEDDLYLLTDNLKSLVGARHP-ILYAAAEHLFSAGGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTAS 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHH
Confidence 36678888999999999999987666 48999999999999999999999999998753 367889999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lD 219 (354)
|||||| ||+|++|||+||+|++||+++|||+||||+++|++.+++.. .. +++..+++++ ..++.||++|
T Consensus 84 LiHDDi--iD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~Gq~~~ 152 (322)
T TIGR02749 84 LVHDDV--IDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLE----NL---EVVKLISKVI--TDFAEGEIKQ 152 (322)
T ss_pred HHHccc--ccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcC----CH---HHHHHHHHHH--HHHHHHHHHH
Confidence 999997 99999999999999999999999999999999999998752 12 3444555665 7899999999
Q ss_pred hhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccch
Q 037716 220 IASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298 (354)
Q Consensus 220 l~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~ 298 (354)
+.+... .+++++|..++.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|||.|+
T Consensus 153 ~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~ 232 (322)
T TIGR02749 153 GLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGS 232 (322)
T ss_pred HHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhH
Confidence 876543 3899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHh---------------------------------HHHHHHHHHHHHHHHHHHhhccCCC-CHHHHHH
Q 037716 299 DLASGKATYPKLMG---------------------------------IENAKSFAGELLGQAIEELAYFEAS-KAAPLYF 344 (354)
Q Consensus 299 Dl~~gk~T~p~l~~---------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~ 344 (354)
||++||+|+|++++ +++++++++++.++|++.|+.||.. .++.|..
T Consensus 233 Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~ 312 (322)
T TIGR02749 233 DLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALKE 312 (322)
T ss_pred HHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999975 5788999999999999999999653 4688999
Q ss_pred HHHHHHhccC
Q 037716 345 LANYIASRQN 354 (354)
Q Consensus 345 l~~~~~~R~~ 354 (354)
|++++.+|.+
T Consensus 313 l~~~~~~R~~ 322 (322)
T TIGR02749 313 LVHFVLSRLY 322 (322)
T ss_pred HHHHHHhcCC
Confidence 9999999975
No 6
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=2.6e-61 Score=466.60 Aligned_cols=282 Identities=29% Similarity=0.410 Sum_probs=253.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCc---hhhhhHHHHHHHHHH
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE---SWAMPAACALEMIHT 137 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~---~~~~~lA~avEliH~ 137 (354)
..++..++++.+..|++.|++.+....| .+.++++|++..||||+||.+|+++++++|++. ..++.+|+++|++|+
T Consensus 4 ~~~~~~~~~~~l~~i~~~l~~~~~~~~~-~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~~~~~~~~~~~~A~aiEllH~ 82 (323)
T CHL00151 4 NSNLLTPIEEELLILEDNLKKLIGSGHP-ILYAAAKHLFSAGGKRIRPAIVLLVAKATGGNMEIKTSQQRLAEITEIIHT 82 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHH
Confidence 5677889999999999999999987666 589999999999999999999999999998753 456789999999999
Q ss_pred HHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 037716 138 MSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEF 217 (354)
Q Consensus 138 asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~ 217 (354)
|||||||| ||++++|||+||+|.+||++.|||+||||++.|++.+++... . +++..+++++ ..++.||.
T Consensus 83 asLiHDDi--~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~----~---~~~~~~~~~~--~~l~~G~~ 151 (323)
T CHL00151 83 ASLVHDDV--IDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNN----L---EVVKLISKVI--TDFAEGEI 151 (323)
T ss_pred HHHHHccc--ccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCC----h---HHHHHHHHHH--HHHHHHHH
Confidence 99999997 999999999999999999999999999999999999987521 2 2233445555 67899999
Q ss_pred hhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCcc
Q 037716 218 VDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTA 296 (354)
Q Consensus 218 lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~ 296 (354)
+|..+... ..+.++|..++.+|||+||++||.+|++++|.+++.++.+++||.++|+||||+||++|++++++.+|||.
T Consensus 152 ~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~ 231 (323)
T CHL00151 152 RQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPI 231 (323)
T ss_pred HHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCc
Confidence 98776543 37889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCcHHHHHh---------------------------------HHHHHHHHHHHHHHHHHHhhccCC-CCHHHH
Q 037716 297 GKDLASGKATYPKLMG---------------------------------IENAKSFAGELLGQAIEELAYFEA-SKAAPL 342 (354)
Q Consensus 297 g~Dl~~gk~T~p~l~~---------------------------------le~a~~~~~~~~~~A~~~L~~l~~-~~~~~L 342 (354)
|+|+++||+|||++++ +++|++++++|.++|++.|+.||. ..++.|
T Consensus 232 g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L 311 (323)
T CHL00151 232 GSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSL 311 (323)
T ss_pred hhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999986 678899999999999999999965 446889
Q ss_pred HHHHHHHHhccC
Q 037716 343 YFLANYIASRQN 354 (354)
Q Consensus 343 ~~l~~~~~~R~~ 354 (354)
..+++|+++|.|
T Consensus 312 ~~l~~~~~~R~~ 323 (323)
T CHL00151 312 IEIANFIINRLN 323 (323)
T ss_pred HHHHHHHHhccC
Confidence 999999999986
No 7
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=3.4e-61 Score=465.32 Aligned_cols=279 Identities=28% Similarity=0.463 Sum_probs=251.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhC
Q 037716 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHD 143 (354)
Q Consensus 64 ~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhD 143 (354)
+..+++..++.|++.|.+.+....| .+.++.+|.+..||||+||.+++++++++|++.+..+++|++|||||+||||||
T Consensus 6 ~~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~~GKrlRp~l~ll~~~~~g~~~~~~~~~A~avEllH~asLiHD 84 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQLNSDVQ-LINQLGYYIISGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHD 84 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccch-hHHHHHHHHHhCCCchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHc
Confidence 4667788899999999999976444 489999999999999999999999999999988889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 037716 144 DLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASE 223 (354)
Q Consensus 144 DI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~ 223 (354)
|| ||++++|||+||+|.+||+++|||+||||++.|++.++++. .. +++..+++++ ..+++||.+|+.+.
T Consensus 85 DI--~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~Gq~~d~~~~ 153 (323)
T PRK10888 85 DV--VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLG----SL---KVLEVMSEAV--NVIAEGEVLQLMNV 153 (323)
T ss_pred cc--ccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 97 99999999999999999999999999999999999998742 12 3445566666 78999999999875
Q ss_pred CC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhc
Q 037716 224 GK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302 (354)
Q Consensus 224 ~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~ 302 (354)
.. .+++++|..++.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++|++++++.+|||.|+|+++
T Consensus 154 ~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~ 233 (323)
T PRK10888 154 NDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNE 233 (323)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhc
Confidence 43 38999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHh-------------------------------------HHHHHHHHHHHHHHHHHHhhccCCC-CHHHHHH
Q 037716 303 GKATYPKLMG-------------------------------------IENAKSFAGELLGQAIEELAYFEAS-KAAPLYF 344 (354)
Q Consensus 303 gk~T~p~l~~-------------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~ 344 (354)
||+|||++++ ++++++++++|.++|++.|+.||.. .++.|..
T Consensus 234 gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~ 313 (323)
T PRK10888 234 GKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIG 313 (323)
T ss_pred CCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999873 4567778899999999999999654 4689999
Q ss_pred HHHHHHhccC
Q 037716 345 LANYIASRQN 354 (354)
Q Consensus 345 l~~~~~~R~~ 354 (354)
+++++++|.+
T Consensus 314 l~~~~~~R~~ 323 (323)
T PRK10888 314 LAHIAVQRDR 323 (323)
T ss_pred HHHHHHhCcC
Confidence 9999999974
No 8
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=4.8e-61 Score=475.10 Aligned_cols=282 Identities=29% Similarity=0.382 Sum_probs=253.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCC--CccchHHHHHHHHHHhCCCc----------------
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAG--GKRVRPLLCIASCELVGGDE---------------- 122 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~---------------- 122 (354)
..++...+++++..|++.|++.+....| .+.++++|++..| |||+||+|++++++++|.+.
T Consensus 81 ~~~~~~~i~~~L~~v~~~L~~~v~~~~~-~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~ 159 (422)
T PLN02890 81 QLDPFSLVADELSLLANKLRSMVVAEVP-KLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASEL 159 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCh-HHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccch
Confidence 3456667788899999999999987655 4999999999988 99999999999999988642
Q ss_pred -hhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 037716 123 -SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIA 201 (354)
Q Consensus 123 -~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~ 201 (354)
+.++.+|++|||||+|||||||| ||++++|||+||+|.+||++.||++||||+++|+..++... . .+++.
T Consensus 160 ~~~~~~~AaavEliH~ASLVHDDI--iD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~----~---~~~~~ 230 (422)
T PLN02890 160 RTRQQNIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALK----N---TEVVS 230 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccc--ccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCC----c---HHHHH
Confidence 34678999999999999999997 99999999999999999999999999999999999998742 1 24556
Q ss_pred HHHHHhhhhhhhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037716 202 EMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVD 280 (354)
Q Consensus 202 ~l~~a~g~~~~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~D 280 (354)
.+++++ ..+++||.+|+.+... .+++++|..++.+|||+||+.||++|++++|++++..+.+++||+++|+||||+|
T Consensus 231 ~~s~a~--~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~D 308 (422)
T PLN02890 231 LLATAV--EHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLID 308 (422)
T ss_pred HHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777 8899999999988654 3899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCChhhhCCccchhhhcCCCcHHHHH---------------------------------hHHHHHHHHHHHHHHH
Q 037716 281 DILDVTKSSEELGKTAGKDLASGKATYPKLM---------------------------------GIENAKSFAGELLGQA 327 (354)
Q Consensus 281 D~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~---------------------------------~le~a~~~~~~~~~~A 327 (354)
|++|++++++.+|||.|+||++||+|+|+++ ++++|++++++|.++|
T Consensus 309 DiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A 388 (422)
T PLN02890 309 DVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLA 388 (422)
T ss_pred HHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 5678899999999999
Q ss_pred HHHhhccCCCC-------HHHHHHHHHHHHhccC
Q 037716 328 IEELAYFEASK-------AAPLYFLANYIASRQN 354 (354)
Q Consensus 328 ~~~L~~l~~~~-------~~~L~~l~~~~~~R~~ 354 (354)
++.|+.||... ++.|..|++++++|++
T Consensus 389 ~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 389 AAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HHHHHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 99999996543 7899999999999975
No 9
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=9.2e-61 Score=473.28 Aligned_cols=281 Identities=33% Similarity=0.424 Sum_probs=251.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCC------CchhhhhHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG------DESWAMPAACALEMI 135 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~------~~~~~~~lA~avEli 135 (354)
.++.+++.++++.|++.|.+.+....| .+.++++|++..||||+||+|++++++++|. ..+..+.+|++||||
T Consensus 95 ~~~~~~v~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~~~~~~~~~~lAaaiEli 173 (416)
T PLN02857 95 SELFEPVADDLQQLNDNLQSIVGAENP-VLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITEMI 173 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHH
Confidence 456677888899999999999987555 4899999999999999999999999998852 236789999999999
Q ss_pred HHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhh
Q 037716 136 HTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAG 215 (354)
Q Consensus 136 H~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~G 215 (354)
|+|||||||| ||++++|||+||+|.+||+++|||+||||+++|++.++++. ... ++..+++++ ..++.|
T Consensus 174 H~ASLIHDDI--~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~----~~~---~~~~~s~~~--~~l~~G 242 (416)
T PLN02857 174 HTASLIHDDV--LDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLD----NLE---VIKLISQVI--KDFASG 242 (416)
T ss_pred HHHHHHHCcc--ccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCC----cHH---HHHHHHHHH--HHHHhh
Confidence 9999999997 99999999999999999999999999999999999998742 223 344455555 778999
Q ss_pred hhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCC
Q 037716 216 EFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGK 294 (354)
Q Consensus 216 Q~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK 294 (354)
|+.|+.+... ..++++|..++.+|||+||+.+|++|++++|++++..+.+++||+++|+||||+||++|++++++.+||
T Consensus 243 ei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK 322 (416)
T PLN02857 243 EIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGK 322 (416)
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC
Confidence 9998776543 378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCcHHHHH---------------------------------hHHHHHHHHHHHHHHHHHHhhccCCC-CHH
Q 037716 295 TAGKDLASGKATYPKLM---------------------------------GIENAKSFAGELLGQAIEELAYFEAS-KAA 340 (354)
Q Consensus 295 ~~g~Dl~~gk~T~p~l~---------------------------------~le~a~~~~~~~~~~A~~~L~~l~~~-~~~ 340 (354)
|.|+||.+||+|||+++ |+++|+++++++.++|++.|+.||.. .++
T Consensus 323 ~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~~~~ 402 (416)
T PLN02857 323 PAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGAFRS 402 (416)
T ss_pred CcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999997 67789999999999999999999653 468
Q ss_pred HHHHHHHHHHhccC
Q 037716 341 PLYFLANYIASRQN 354 (354)
Q Consensus 341 ~L~~l~~~~~~R~~ 354 (354)
.|..+++|+++|.+
T Consensus 403 ~L~~L~~~~~~R~~ 416 (416)
T PLN02857 403 SLEDMVDYNLERIY 416 (416)
T ss_pred HHHHHHHHHHhccC
Confidence 89999999999974
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=2.5e-56 Score=419.76 Aligned_cols=253 Identities=42% Similarity=0.626 Sum_probs=234.4
Q ss_pred hhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCc-hhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChH
Q 037716 89 VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE-SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGES 167 (354)
Q Consensus 89 ~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~-~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~ 167 (354)
+.+.++++|.+..||||+||.+++++++++|+++ +.+..+|+++|++|+|+|||||| ||+|+.|||+||+|.+||+.
T Consensus 4 ~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g~~~~~~~~~la~aiEllh~asLIhDDI--~D~s~~RRG~p~~~~~~G~~ 81 (259)
T cd00685 4 ELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDDV--MDNSDLRRGKPTVHKVFGNA 81 (259)
T ss_pred hHHHHHHHHHHHcCCccHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhhh--ccCCcccCCCCcHHHHhCcc
Confidence 3588999999999999999999999999999988 89999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHH
Q 037716 168 TAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEA 246 (354)
Q Consensus 168 ~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~ 246 (354)
.|||+||+|++.+++.+++.... ...+++..+++++ .+++.||.+|+.+... .+++++|..++.+|||+||..
T Consensus 82 ~Ail~gd~l~~~a~~~l~~~~~~----~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~ 155 (259)
T cd00685 82 TAILAGDYLLARAFELLARLGNP----YYPRALELFSEAI--LELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAA 155 (259)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCc----cHHHHHHHHHHHH--HHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999875322 3346667777777 8999999999998765 489999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHH
Q 037716 247 AVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQ 326 (354)
Q Consensus 247 ~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~ 326 (354)
+|.+|++++|++++.++.+++||+++|++|||+||++|++++++.+||+.++|+++||+|||+++++ ++.++.+.++
T Consensus 156 ~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l---~~~~~~~~~~ 232 (259)
T cd00685 156 APLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---RELAREYEEK 232 (259)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHhhccCCCC-HHHHHHHHHHHHhc
Q 037716 327 AIEELAYFEASK-AAPLYFLANYIASR 352 (354)
Q Consensus 327 A~~~L~~l~~~~-~~~L~~l~~~~~~R 352 (354)
|++.|+.++... +..|..+++++.+|
T Consensus 233 a~~~l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 233 ALEALKALPESPAREALRALADFILER 259 (259)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 999999996544 67899999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=5.8e-55 Score=410.72 Aligned_cols=235 Identities=41% Similarity=0.623 Sum_probs=213.4
Q ss_pred HHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHH
Q 037716 92 HKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAIL 171 (354)
Q Consensus 92 ~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl 171 (354)
.+++.|++..||||+||.|++++++++|++.+.+.++|++|||||+|||||||| ||+|++|||+||+|.+||++.|||
T Consensus 2 ~~~~~~~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI--~D~s~~RRG~pt~~~~~G~~~Ail 79 (260)
T PF00348_consen 2 LEPARYYILRGGKRIRPLLVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDI--IDNSDLRRGKPTVHKKFGNAIAIL 79 (260)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCSEETTEECHHHHHHHHHHHH
T ss_pred hHHHHHHhhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh--hcccccCCCCccccccccccchhh
Confidence 467889999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHH
Q 037716 172 AGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCG 251 (354)
Q Consensus 172 ~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~g 251 (354)
+||+|++.|++.++++....+......+++.+...+ .....||..|+.+.....++++|..|+++|||+||++||++|
T Consensus 80 ~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~g 157 (260)
T PF00348_consen 80 AGDYLLALAFELLARLGHFDPSERVLRILELFIEAL--IEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLG 157 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhc--ccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999999999752222345556666666555 556778999999886678999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 252 AVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 252 a~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
++++|.+++.++.+++||.++|++|||+||++|++++++..||+.|+||++||+|||++++++.+.+..+++..++.+.
T Consensus 158 a~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~~~ 236 (260)
T PF00348_consen 158 AILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAYGK 236 (260)
T ss_dssp HHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888877776554
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1.4e-41 Score=314.01 Aligned_cols=231 Identities=36% Similarity=0.537 Sum_probs=204.3
Q ss_pred chHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccc-cChHHHHHHHHHHHHHHHHHH
Q 037716 106 VRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEV-FGESTAILAGDALLSLALEHV 184 (354)
Q Consensus 106 lRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~-~G~~~AIl~GD~Ll~~a~~~l 184 (354)
+||.+++++++++|++.+.+..+++++|+||++++||||| +|++..|||+|++|.+ ||+..|+++||+++..++..+
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI--~D~~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~~~l 78 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDI--VDDSDLRRGKPTAHLRRFGNALAILAGDYLLARAFQLL 78 (236)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--ccCCccCCCCccHhHHhhCHhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999998 8999999999999999 999999999999999999999
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHH
Q 037716 185 AVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVE 263 (354)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~ 263 (354)
.++. . .+.+..+.+.+ .+++.||.+|+.+..+ ..++++|..++++|||++|+.+|..++++++.+++..+
T Consensus 79 ~~~~----~---~~~~~~~~~~~--~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd00867 79 ARLG----Y---PRALELFAEAL--RELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAE 149 (236)
T ss_pred HhCC----h---HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHH
Confidence 8752 1 23344445555 7899999999988753 48999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCC---CHH
Q 037716 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEAS---KAA 340 (354)
Q Consensus 264 ~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~---~~~ 340 (354)
.+++||.++|++|||.||++|+.+|.+..|| .++|+++||+|||.+++ .+.+.++.+++.+.+..+.+. .+.
T Consensus 150 ~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (236)
T cd00867 150 ALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA----RERAAEYAEEAYAALEALPPSLPRARR 224 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 9999999999999999999999999999999 99999999999999988 555666667777777766332 357
Q ss_pred HHHHHHHHHHhc
Q 037716 341 PLYFLANYIASR 352 (354)
Q Consensus 341 ~L~~l~~~~~~R 352 (354)
.+..++.++.+|
T Consensus 225 ~~~~~~~~~~~r 236 (236)
T cd00867 225 ALIALADFLYRR 236 (236)
T ss_pred HHHHHHHHHHhC
Confidence 788888888776
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.6e-36 Score=268.07 Aligned_cols=233 Identities=23% Similarity=0.298 Sum_probs=206.2
Q ss_pred hhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHH
Q 037716 89 VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGEST 168 (354)
Q Consensus 89 ~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~ 168 (354)
+.+.++..|++..+||.+|.-+.++...|+..+.++...+..+|||+|++||..|||+ |++.+|||.|+.|..||+..
T Consensus 21 ~ill~Py~yilq~PGKqfR~~L~~afNhwl~~P~dkLaii~~ivemLHNsSLLIDDIE--DNs~LRRG~pvaHsIyGvpS 98 (322)
T KOG0777|consen 21 SILLKPYNYILQKPGKQFRLNLIVAFNHWLNLPKDKLAIISQIVEMLHNSSLLIDDIE--DNSPLRRGQPVAHSIYGVPS 98 (322)
T ss_pred HHHhchHHHHHhCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccceeecccc--ccchhhcCCcchhhhccCcc
Confidence 3477899999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCC--CCHHHHHHHHHhchHHHHHH
Q 037716 169 AILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD--VSLKELEYIHVHKTAKLLEA 246 (354)
Q Consensus 169 AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~--~~~~~~~~i~~~KTg~Lf~~ 246 (354)
.|++++|++..|++.+..+.. +...+++ .+.+ ..++.||.+|+.|++.- +++++|..|+..|||-||.+
T Consensus 99 tINtANY~yFlalekV~qLdh----P~a~kif---teqL--leLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~L 169 (322)
T KOG0777|consen 99 TINTANYMYFLALEKVSQLDH----PNAIKIF---TEQL--LELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRL 169 (322)
T ss_pred hhhhhHHHHHHHHHHHHhcCC----chHHHHH---HHHH--HHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccHHHH
Confidence 999999999999999998753 2333444 3333 68899999999998754 89999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHH---------------
Q 037716 247 AVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM--------------- 311 (354)
Q Consensus 247 ~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~--------------- 311 (354)
+.++.-.++.. -+.+..+-..+|+.|||+|||+++...+..-.|..++|+.+||.++|+++
T Consensus 170 a~rLMqlfS~~----kedl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~IL 245 (322)
T KOG0777|consen 170 ALRLMQLFSHH----KEDLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRIL 245 (322)
T ss_pred HHHHHHHHHhc----chhHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHHHHH
Confidence 99998888753 24577788889999999999999987777778999999999999999987
Q ss_pred ---------------------hHHHHHHHHHHHHHHHHHHhhccCC
Q 037716 312 ---------------------GIENAKSFAGELLGQAIEELAYFEA 336 (354)
Q Consensus 312 ---------------------~le~a~~~~~~~~~~A~~~L~~l~~ 336 (354)
+++|+|+..+++..+|.+.+....+
T Consensus 246 rqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~ 291 (322)
T KOG0777|consen 246 RQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGE 291 (322)
T ss_pred HHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999999999988743
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.7e-35 Score=271.00 Aligned_cols=220 Identities=23% Similarity=0.294 Sum_probs=183.9
Q ss_pred hhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCc-------hhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcc
Q 037716 89 VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE-------SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASH 161 (354)
Q Consensus 89 ~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~-------~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h 161 (354)
+.+...+.|. ..|||..|++.++.+.+++.++. ..+..++|+||+++++.||.||| ||+|.+|||+||||
T Consensus 38 ~~~~~~L~yN-~~GGK~nRgl~vv~s~~~L~~~~~l~~~~~~~a~~lGw~vElLQaffLiaDDI--MDnS~tRRGqpCWy 114 (347)
T KOG0711|consen 38 EWLKEVLDYN-VIGGKLNRGLSVVDSFKALVEPRKLDEEELQLALILGWCVELLQAFFLVADDI--MDNSKTRRGQPCWY 114 (347)
T ss_pred HHHHHHHhcc-CcccccccchhHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hccccccCCCccee
Confidence 3466677777 48999999999999999887633 34567899999999999999998 99999999999999
Q ss_pred cccChH-HHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCC---CCHHHHHHHHH
Q 037716 162 EVFGES-TAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD---VSLKELEYIHV 237 (354)
Q Consensus 162 ~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~---~~~~~~~~i~~ 237 (354)
.+-|++ .|||.+-.|-+....+|.+...+.+. ..++++.+.... ..++.||.++....... ++++.|..|+.
T Consensus 115 ~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~--y~~l~elf~ev~--f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~ 190 (347)
T KOG0711|consen 115 QKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYC--YVDLVELFHEVT--FQTELGDLLTTPEGNKDLSKFSLEKYVFIVE 190 (347)
T ss_pred ecCCcchhhhhHHHHHHHHHHHHHHHhccCCcc--HHHHHHHHHHHH--HHHhhhccccCcccchhHhhhhHHHHHHHhh
Confidence 999995 69999888887777777765554432 334444444334 77889988876544332 89999999999
Q ss_pred hchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHH
Q 037716 238 HKTAKL-LEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIEN 315 (354)
Q Consensus 238 ~KTg~L-f~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~ 315 (354)
+|||.+ |.+|..+|.+++| .+.+.......+...+|..||+|||+||++||++.+|| .|+||+++||||.++.++++
T Consensus 191 ~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv~~al~~ 269 (347)
T KOG0711|consen 191 YKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWLVVKALQR 269 (347)
T ss_pred ccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeeehHHHHhh
Confidence 999998 9999999999998 56778889999999999999999999999999999999 49999999999999987776
Q ss_pred H
Q 037716 316 A 316 (354)
Q Consensus 316 a 316 (354)
|
T Consensus 270 ~ 270 (347)
T KOG0711|consen 270 A 270 (347)
T ss_pred c
Confidence 5
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.87 E-value=5.6e-20 Score=166.31 Aligned_cols=190 Identities=34% Similarity=0.457 Sum_probs=160.4
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccc---cChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 037716 126 MPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEV---FGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAE 202 (354)
Q Consensus 126 ~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~---~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~ 202 (354)
..++.++|.+|+++++|||| +|++..||+.|++|.. +|...+++.|+.++..++..+..... ......
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi--~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 83 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDI--VDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGS-------PEALEI 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhc--ccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCC-------HHHHHH
Confidence 57889999999999999998 8999999999999998 99999999999999999999987422 233444
Q ss_pred HHHHhhhhhhhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 037716 203 MCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDD 281 (354)
Q Consensus 203 l~~a~g~~~~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD 281 (354)
+.+.+ .+++.||..|+.+... .++.++|..+.+.|||.++...|..++...+.+......+..++.++|.++|+.||
T Consensus 84 ~~~~~--~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nD 161 (243)
T cd00385 84 LAEAL--LDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTND 161 (243)
T ss_pred HHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 7899999999998753 38999999999999999999999999888877777788999999999999999999
Q ss_pred hhhhcCChhhhCCccchhhhcCCCcHHHHH------------------hHHHHHHHHHHHHHHHHHHhhccC
Q 037716 282 ILDVTKSSEELGKTAGKDLASGKATYPKLM------------------GIENAKSFAGELLGQAIEELAYFE 335 (354)
Q Consensus 282 ~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~------------------~le~a~~~~~~~~~~A~~~L~~l~ 335 (354)
+.|+..+.+.. +|++|+|.++ +++.+.+.+..+.+++++.+..+.
T Consensus 162 l~~~~~e~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (243)
T cd00385 162 LLDYEGDAERG---------EGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELI 224 (243)
T ss_pred HHhccCCHHHh---------CCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998765432 4789999886 345677777888888888888763
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=96.84 E-value=0.02 Score=52.38 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=68.2
Q ss_pred CchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHH
Q 037716 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAI 200 (354)
Q Consensus 121 ~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i 200 (354)
.++.....+.++-++|+|...||.| |++..+++...-. -...||+|||.-+.-+.+|++... +.++
T Consensus 31 ~~~~~~~~~~a~~LVq~aLDtHd~V---~~~~~~~~~~~k~----RQLtVLAGDy~S~~yY~lLA~~~~-------i~li 96 (212)
T PF07307_consen 31 SEEEAERYALATMLVQIALDTHDEV---DNAGDESEESSKE----RQLTVLAGDYYSGLYYQLLAESGD-------ISLI 96 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhh---ccccccccHHHHh----hhhhhhhHHHHHHHHHHHHHhCCC-------HHHH
Confidence 4567788899999999999999996 6644433322222 246999999999999999998632 2556
Q ss_pred HHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHH-HHHHhchHHHHHH
Q 037716 201 AEMCSAMGVEGLVAGEFVDIASEGKDVSLKELE-YIHVHKTAKLLEA 246 (354)
Q Consensus 201 ~~l~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~-~i~~~KTg~Lf~~ 246 (354)
..++.++ ..+.+....=... . ..+.++|. .+..-+|+-+...
T Consensus 97 ~~ls~aI--~eiNE~K~~ly~~-~-~~~~e~~~~~~~~ies~l~~~~ 139 (212)
T PF07307_consen 97 RALSEAI--KEINELKMSLYQK-K-KETAEEYLESVVTIESALFQSF 139 (212)
T ss_pred HHHHHHH--HHHHHHHHHHHHh-h-hCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666 5555555332111 1 13555443 3444455444333
No 17
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=96.73 E-value=0.17 Score=47.68 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=75.6
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
.+++.|...|+.... ..+.++++..+.+-.|+...+++.+ ++... .+....++.++|+|+|+.+=+.|+-
T Consensus 96 ~~li~g~~~Dl~~~~-~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~---~~~~~~~A~~lG~AlqltnilRdv~--- 165 (265)
T cd00683 96 RDLLAGMAMDLDKRR-YETLDELDEYCYYVAGVVGLMLLRV---FGASS---DEAALERARALGLALQLTNILRDVG--- 165 (265)
T ss_pred HHHHHHHHHhCCCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---hCCCC---ChHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 567788888887532 2678888887777777776665543 33211 2345688999999999998888873
Q ss_pred hhhCCccchhhhcCCCcHHH----------------------HHhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 037716 290 EELGKTAGKDLASGKATYPK----------------------LMGIENAKSFAGELLGQAIEELAYFEASK 338 (354)
Q Consensus 290 ~~~GK~~g~Dl~~gk~T~p~----------------------l~~le~a~~~~~~~~~~A~~~L~~l~~~~ 338 (354)
.|+..|++.+|. .-.++.--..++.+...|.+.+..++...
T Consensus 166 --------eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 228 (265)
T cd00683 166 --------EDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRS 228 (265)
T ss_pred --------HHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 355556665553 22344555667888888888888887533
No 18
>PLN02632 phytoene synthase
Probab=96.61 E-value=0.19 Score=49.31 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=77.5
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGN--AIEVERVRNYARCIGLLFQVVDDILDVTK 287 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~--~~~~~~l~~~g~~lG~afQI~DD~lD~~~ 287 (354)
.+++.|...|+.... ..+.++++.-+.+-.|.+..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.|+
T Consensus 143 ~~li~g~~~Dl~~~~-~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv-- 216 (334)
T PLN02632 143 RDMIEGMRMDLVKSR-YENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRDV-- 216 (334)
T ss_pred HHHHHHHHHHhccCC-CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 456788888886532 2588888877767777776666654 23222 223356778899999999999988887
Q ss_pred ChhhhCCccchhhhcCCCcHHHH----------------------HhHHHHHHHHHHHHHHHHHHhhccCCCCH
Q 037716 288 SSEELGKTAGKDLASGKATYPKL----------------------MGIENAKSFAGELLGQAIEELAYFEASKA 339 (354)
Q Consensus 288 ~~~~~GK~~g~Dl~~gk~T~p~l----------------------~~le~a~~~~~~~~~~A~~~L~~l~~~~~ 339 (354)
+.|+..|++-+|.= -.++.--..++.+.++|...+..++...+
T Consensus 217 ---------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 217 ---------GEDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred ---------HHHHhCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 34666677666641 12233335678888888888888875443
No 19
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=96.39 E-value=0.6 Score=44.02 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=74.4
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
..++.|...|+.... ..+.++++.-+..-.|.+..+.+.+ ++..+ +.....+.++|.|+|+.|=+.|+
T Consensus 88 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~----~~~~~~a~~lG~AlqltnilRdv---- 155 (266)
T TIGR03465 88 LEVIDGMEMDLEQTR-YPDFAELDLYCDRVAGAVGRLSARI---FGATD----ARTLEYAHHLGRALQLTNILRDV---- 155 (266)
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---hCCCC----hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 467788888887542 3688888877777777777776654 33322 23578899999999999888887
Q ss_pred hhhCCccchhhhcCCCcHHHHH----------------------hHHHHHHHHHHHHHHHHHHhhccCC
Q 037716 290 EELGKTAGKDLASGKATYPKLM----------------------GIENAKSFAGELLGQAIEELAYFEA 336 (354)
Q Consensus 290 ~~~GK~~g~Dl~~gk~T~p~l~----------------------~le~a~~~~~~~~~~A~~~L~~l~~ 336 (354)
+.|+..|++.+|.=. .+..--..++.+.++|.+.+..++.
T Consensus 156 -------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~ 217 (266)
T TIGR03465 156 -------GEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDR 217 (266)
T ss_pred -------HHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCH
Confidence 346667777777411 2333345577777888888777764
No 20
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.33 E-value=0.27 Score=48.26 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=72.1
Q ss_pred hhhhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 037716 210 EGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKS 288 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~ 288 (354)
..|..|...|+..... ..+.+++..-+.+=.|..=.+.+.+-+. +|...+.......++..+|+|+|+-|=+.|+
T Consensus 111 ~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQlTNIlRDv--- 186 (336)
T TIGR01559 111 RRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQKTNIIRDY--- 186 (336)
T ss_pred HHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHHHHHHHHHH---
Confidence 4566788777764421 1577777766544444443333333222 2222222223468899999999999988887
Q ss_pred hhhhCCccchhhhcCCCcHHHH----------------------HhHHHHHHHHHHHHHHHHHHhhccCCCCH
Q 037716 289 SEELGKTAGKDLASGKATYPKL----------------------MGIENAKSFAGELLGQAIEELAYFEASKA 339 (354)
Q Consensus 289 ~~~~GK~~g~Dl~~gk~T~p~l----------------------~~le~a~~~~~~~~~~A~~~L~~l~~~~~ 339 (354)
++|+.+|++=||.= -.++.--..+..+..+|.+.+..++....
T Consensus 187 --------~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~yl~~l~~~~~ 251 (336)
T TIGR01559 187 --------LEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTYLSRLRDQSI 251 (336)
T ss_pred --------HhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 44666777777742 13334445577888888888888854333
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.58 E-value=0.3 Score=46.11 Aligned_cols=109 Identities=16% Similarity=0.076 Sum_probs=72.2
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
..++.|...|+.... ..+.++++.-+.+-.|++..+++.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 89 ~~li~~~~~Dl~~~~-~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl---- 156 (266)
T TIGR03464 89 LDLLDAFRQDVVVTR-YATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV---- 156 (266)
T ss_pred HHHHHHHHHhccCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh----
Confidence 455678888876542 2688888877766667776666543 3333322 346899999999999888886
Q ss_pred hhhCCccchhhhcCCCcHHHH----------------------HhHHHHHHHHHHHHHHHHHHhhccCCC
Q 037716 290 EELGKTAGKDLASGKATYPKL----------------------MGIENAKSFAGELLGQAIEELAYFEAS 337 (354)
Q Consensus 290 ~~~GK~~g~Dl~~gk~T~p~l----------------------~~le~a~~~~~~~~~~A~~~L~~l~~~ 337 (354)
++|...|++-+|.= -.++.--..++.+..+|.+.+..+|..
T Consensus 157 -------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 219 (266)
T TIGR03464 157 -------GVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGR 219 (266)
T ss_pred -------HHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHh
Confidence 34555566666531 133444456788888888888888653
No 22
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=94.74 E-value=0.7 Score=43.26 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=71.9
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
.+++.|...|+.... ..|.+++...+.+-+|++..+.+.+...- .+. ......+.++|.++|+.|=+.|+
T Consensus 94 ~~li~~~~~dl~~~~-~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~---- 163 (267)
T PF00494_consen 94 LELIDGMEMDLEFTP-YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI---- 163 (267)
T ss_dssp HHHHHHHHHCTT-S---SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHhcccccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 567788888887543 25888998888888888877776653221 111 56788899999999999888887
Q ss_pred hhhCCccchh-hhcCCCcHHHHH-----------------------hHHHHHHHHHHHHHHHHHHhhccCC
Q 037716 290 EELGKTAGKD-LASGKATYPKLM-----------------------GIENAKSFAGELLGQAIEELAYFEA 336 (354)
Q Consensus 290 ~~~GK~~g~D-l~~gk~T~p~l~-----------------------~le~a~~~~~~~~~~A~~~L~~l~~ 336 (354)
+.| +..|++-+|.=. .+..--..++.+.++|.+.+..+++
T Consensus 164 -------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~ 227 (267)
T PF00494_consen 164 -------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPP 227 (267)
T ss_dssp -------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--
T ss_pred -------HHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 446 566676666421 1233345567788888888888833
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=91.73 E-value=12 Score=35.52 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=61.8
Q ss_pred hhhhhhhhhhhhccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHhcC--CCHHHHH--HHHHHHHHHHHHHHHHHhhh
Q 037716 210 EGLVAGEFVDIASEGK--DVSLKELEYIHVHKTAKLLEAAVVCGAVIGG--GNAIEVE--RVRNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~--~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag--~~~~~~~--~l~~~g~~lG~afQI~DD~l 283 (354)
.+.+.|+..+..+... .++.++|..+-..-.|..+.+.+ +-...| ..+...+ .+..+-...+...-+.||+.
T Consensus 139 ~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~ 216 (303)
T cd00687 139 EDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIY 216 (303)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 4555676666554432 37999998774333344332221 112222 2344333 47788888999999999999
Q ss_pred hhcCChhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHh
Q 037716 284 DVTKSSEELGKTAGKDLASGK-ATYPKLM------GIENAKSFAGELLGQAIEEL 331 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L 331 (354)
.+..+... .|. .++..++ ..+.|.+.+.++.+++.+..
T Consensus 217 S~~KE~~~----------~g~~~N~V~vl~~~~g~s~~eA~~~~~~~~~~~~~~f 261 (303)
T cd00687 217 SYEKEIKA----------NGEVHNLVKVLAEEHGLSLEEAISVVRDMHNERITQF 261 (303)
T ss_pred hhHHHHHh----------CCccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 98543212 233 4555554 34556555555555555443
No 24
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=84.94 E-value=15 Score=34.37 Aligned_cols=68 Identities=31% Similarity=0.334 Sum_probs=51.4
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 256 GGNA-IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 256 g~~~-~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
|.++ +....+...-+-+=.+.-|.||+.| .++.|.|++|+-..+|...|-....-+...|.+.|...
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D------------~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~ 101 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMD------------NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARL 101 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhcc------------CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhC
Confidence 4344 5556666777778889999999977 23567899999888888777777777888888887765
Q ss_pred C
Q 037716 335 E 335 (354)
Q Consensus 335 ~ 335 (354)
.
T Consensus 102 ~ 102 (259)
T cd00685 102 G 102 (259)
T ss_pred C
Confidence 3
No 25
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=83.60 E-value=12 Score=36.33 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=52.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 037716 253 VIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 253 ~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~ 332 (354)
.++|.+.+....+...-+.+=.|.-|.||++| .+++|.|++|....+|-..|--..+-++.+|.+.+.
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~ 123 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVID------------DADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMT 123 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccC------------CCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666777788899999988 347788999998888888777777777778887776
Q ss_pred ccC
Q 037716 333 YFE 335 (354)
Q Consensus 333 ~l~ 335 (354)
.++
T Consensus 124 ~~~ 126 (319)
T TIGR02748 124 EIK 126 (319)
T ss_pred hCC
Confidence 653
No 26
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=83.24 E-value=8.2 Score=37.61 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=49.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 251 ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
++.+.|.+.+....+..--+.+=.+..|.||+.| .+++|.|++|+-..+|-..|--.-+-+...|.+.
T Consensus 55 ~~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~ 122 (323)
T PRK10888 55 AARAVGYQGNAHVTIAALIEFIHTATLLHDDVVD------------ESDMRRGKATANAAFGNAASVLVGDFIYTRAFQM 122 (323)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHccccc------------CCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3344454555555566666777788899999987 3578899999888887666665556666666666
Q ss_pred hhcc
Q 037716 331 LAYF 334 (354)
Q Consensus 331 L~~l 334 (354)
+..+
T Consensus 123 l~~~ 126 (323)
T PRK10888 123 MTSL 126 (323)
T ss_pred HHhC
Confidence 6544
No 27
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=82.94 E-value=12 Score=35.01 Aligned_cols=74 Identities=30% Similarity=0.244 Sum_probs=59.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329 (354)
Q Consensus 250 ~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 329 (354)
+.+.+.|.+.+....+...-+.+=.+.-|.||+.| .+++|.|++|.-..+|...|--...-++..|.+
T Consensus 23 ~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~ 90 (260)
T PF00348_consen 23 LAAEALGGDPEKAIPLAAAVELIHAASLIHDDIID------------NSDLRRGKPTVHKKFGNAIAILAGDYLLALAFE 90 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhc------------ccccCCCCccccccccccchhhhchHHHHHHHH
Confidence 33444555677777888888888999999999987 346788999999999988888888888888888
Q ss_pred HhhccC
Q 037716 330 ELAYFE 335 (354)
Q Consensus 330 ~L~~l~ 335 (354)
.+..++
T Consensus 91 ~l~~~~ 96 (260)
T PF00348_consen 91 LLARLG 96 (260)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 887765
No 28
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=81.27 E-value=29 Score=33.30 Aligned_cols=110 Identities=22% Similarity=0.275 Sum_probs=68.3
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
..++.|+..|+..... .+.++++.-+.+=.|..-.++ ..+++-.+ ..........+|.|+|+.+=+.|+
T Consensus 106 ~~~~da~~~Dl~~~~y-~~~~eL~~Yc~~vAg~vG~l~---~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRdv---- 174 (288)
T COG1562 106 PALIDAMRMDLDRTRY-LDFEELEEYCYGVAGAVGLLL---ARILGPDK---DAATRAYARGLGLALQLVNILRDV---- 174 (288)
T ss_pred HHHHHHHHHHhhhccc-cCHHHHHHHHHHhHHHHHHHH---HHHhCccc---chhhHHHHHHHHHHHHHHHHHHHh----
Confidence 4566788888876542 446666654433333332222 22343322 233455555699999999988887
Q ss_pred hhhCCccchhhhcCCCcHHHH----H------------------hHHHHHHHHHHHHHHHHHHhhccCCC
Q 037716 290 EELGKTAGKDLASGKATYPKL----M------------------GIENAKSFAGELLGQAIEELAYFEAS 337 (354)
Q Consensus 290 ~~~GK~~g~Dl~~gk~T~p~l----~------------------~le~a~~~~~~~~~~A~~~L~~l~~~ 337 (354)
++|.+.|+.-+|.= + .+++--..++++...|...+..+|..
T Consensus 175 -------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~ 237 (288)
T COG1562 175 -------GEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGR 237 (288)
T ss_pred -------HHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCcc
Confidence 56778888888731 1 23333456788888899888888653
No 29
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=73.25 E-value=26 Score=34.11 Aligned_cols=63 Identities=27% Similarity=0.208 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 260 ~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
+....+...-+.+=.+.-|.||++| .+++|.|++|+-..+|...|--.-+-++.+|.+.+..+
T Consensus 67 ~~~~~~A~avEliH~asLiHDDiiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~ 129 (322)
T TIGR02749 67 PRHRRLAEITEMIHTASLVHDDVID------------ESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANL 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc------------CccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455556667778899999988 35788999999999887777777777777777777655
No 30
>PRK10581 geranyltranstransferase; Provisional
Probab=70.58 E-value=41 Score=32.35 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=51.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 253 VIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 253 ~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
.+.|.+++....+...-+.+=.+.-|.||+ +| .+|+|.|++|.-..+|-..|--.-+-+...|.+.
T Consensus 57 ~~~g~~~~~~~~~A~avEliH~aSLiHDDip~~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 124 (299)
T PRK10581 57 QMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD------------DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHcCccccc------------CCCccCCCcChHHHhCcchHHHHHHHHHHHHHHH
Confidence 344445555555666666777788999999 77 3588899999999998777776667777777777
Q ss_pred hhcc
Q 037716 331 LAYF 334 (354)
Q Consensus 331 L~~l 334 (354)
+...
T Consensus 125 l~~~ 128 (299)
T PRK10581 125 LSDA 128 (299)
T ss_pred HHhC
Confidence 7654
No 31
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=70.18 E-value=88 Score=28.63 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=58.7
Q ss_pred hhhhhhhhhhhhccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCC-CHH---HHHHHHHHHHHHHHHHHHHHhhh
Q 037716 210 EGLVAGEFVDIASEGK--DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGG-NAI---EVERVRNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~--~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~-~~~---~~~~l~~~g~~lG~afQI~DD~l 283 (354)
...+.|...+..+... .++.++|..+-+.-+|..+...+..-. ++.. .+. .+..-..+-...+..--+.||+.
T Consensus 147 ~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~ 225 (270)
T PF03936_consen 147 REYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFA-LEFALGELPPEVLEHPPMLRRLAADIIRLVNDLY 225 (270)
T ss_dssp HHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHH-CSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHh-CCCccccccHHHHHhchHHHHHHHHHHHHhcccc
Confidence 4555566555554432 388999988755544444333332111 1211 122 12221125566666666679999
Q ss_pred hhcCChhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHh
Q 037716 284 DVTKSSEELGKTAGKDLASGKA-TYPKLM------GIENAKSFAGELLGQAIEEL 331 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L 331 (354)
.+.. ++.+|.. ++..++ .++.|.+.+.+.++++.+.+
T Consensus 226 S~~K-----------E~~~g~~~N~v~~l~~~~~~s~e~A~~~v~~~~~~~~~ef 269 (270)
T PF03936_consen 226 SYKK-----------EIARGDVHNLVVVLMNEHGLSLEEAVDEVAEMINECIREF 269 (270)
T ss_dssp HHHH-----------HHHTTSCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhc-----------chhhcccccHHHHhhhhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 8843 2333443 444333 56777888888888877765
No 32
>CHL00151 preA prenyl transferase; Reviewed
Probab=66.60 E-value=29 Score=33.69 Aligned_cols=59 Identities=25% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 264 ~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
.+...-+.+=.+.-|.||++| .+++|.|++|+-..+|...|--.-+-++.+|.+.+...
T Consensus 72 ~~A~aiEllH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~ 130 (323)
T CHL00151 72 RLAEITEIIHTASLVHDDVID------------ECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANL 130 (323)
T ss_pred HHHHHHHHHHHHHHHHccccc------------CccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhC
Confidence 445555666677889999987 34778899998888876666555555556666555543
No 33
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=65.98 E-value=22 Score=33.56 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHH
Q 037716 271 CIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFA 320 (354)
Q Consensus 271 ~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~ 320 (354)
-+-..+++..|+.|..+ |.+.|+.|+|+.+|.++++...
T Consensus 172 l~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~lG~~~t~~~~ 210 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG-----------DRKSGLKTLPIVLGKERTLKFL 210 (285)
T ss_pred HHHHHHHHHHhcccchh-----------HHHcCCcccchhcchHHHHHHH
Confidence 34567889999999865 5567999999999998887654
No 34
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=65.60 E-value=1.2e+02 Score=31.78 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=70.6
Q ss_pred hhhhhhhhhhhhccCC--CCCHHHHHHHHHhchHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Q 037716 210 EGLVAGEFVDIASEGK--DVSLKELEYIHVHKTAKLL-EAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDI 282 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~--~~~~~~~~~i~~~KTg~Lf-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~ 282 (354)
..++.+-..+..|... .|+.++|......-+|... ...+..| ++. .+++..+.+ .++....+....+.||+
T Consensus 366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi 443 (542)
T cd00684 366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVRASSTIGRLMNDI 443 (542)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHHHHHHHHHHhcCh
Confidence 4455566666666543 3899999887544433332 2222222 221 355555543 36778888889999999
Q ss_pred hhhcCChhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHhhcc
Q 037716 283 LDVTKSSEELGKTAGKDLASGK-ATYPKLM------GIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 283 lD~~~~~~~~GK~~g~Dl~~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~~l 334 (354)
..+..+. ..|. ++...++ ..+.|.+.+.+.++++++.|.+.
T Consensus 444 ~S~~kE~-----------~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e 491 (542)
T cd00684 444 ATYEDEM-----------KRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEE 491 (542)
T ss_pred hhhHHHH-----------hcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9885332 2344 4666665 46788888999999999888753
No 35
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=64.30 E-value=15 Score=35.68 Aligned_cols=61 Identities=26% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCC
Q 037716 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEA 336 (354)
Q Consensus 264 ~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~ 336 (354)
.+...-+.+=.+.=|.||++| .+|+|.|++|....+|-..|--.-+-+...|.+.+...+.
T Consensus 70 ~~aaavEliH~~SLiHDDvmD------------~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~ 130 (322)
T COG0142 70 DLAAAIELIHTASLIHDDLMD------------DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGS 130 (322)
T ss_pred HHHHHHHHHHHHHHHHhhccc------------CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344444455566678999976 3588999999999998888877778888888888887643
No 36
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=63.34 E-value=1.3e+02 Score=28.19 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCC---CCCCCCCcccccChHHHHHHHHHHHHHHHHHHH
Q 037716 128 AACALEMIHTMSLIHDDLPFLDNDE---RRRSKPASHEVFGESTAILAGDALLSLALEHVA 185 (354)
Q Consensus 128 lA~avEliH~asLIhDDI~viD~s~---~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 185 (354)
+..++=++|.+..+.+|+ .|-+. .|+.+|...-....+.|...+-.+...++-...
T Consensus 43 ~~l~~~l~~~~~~~~Nd~--~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 43 AFAAVFLATGAGNAINDY--FDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHH--hhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556889999999886 55432 357888888888889998888877777665444
No 37
>PRK13591 ubiA prenyltransferase; Provisional
Probab=63.14 E-value=1.5e+02 Score=28.77 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHH
Q 037716 274 LLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGEL 323 (354)
Q Consensus 274 ~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~ 323 (354)
.+..+.+|+.|+.+ |.++|+.|+|+.+|.+.|+.+..-.
T Consensus 193 ~~~~iindirDiEG-----------Dr~~G~kTLPV~lG~~~A~~l~~~l 231 (307)
T PRK13591 193 FINSCVYDFKDVKG-----------DTLAGIKTLPVSLGEQKTRNLLLGI 231 (307)
T ss_pred HHHHHHHHhhhhHh-----------HHHcCCeeEEEEECHHHHHHHHHHH
Confidence 34457899999854 6678999999999999988765443
No 38
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=62.44 E-value=95 Score=28.00 Aligned_cols=38 Identities=26% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037716 248 VVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDV 285 (354)
Q Consensus 248 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~ 285 (354)
+.+.+.+.|...+....+..--..+=.+.-+.||+.|=
T Consensus 6 ~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI~D~ 43 (236)
T cd00867 6 VLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDD 43 (236)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 33344444556666667777777788888999999883
No 39
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=60.82 E-value=1.5e+02 Score=27.85 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCC---CCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHH-HHHHHHH
Q 037716 127 PAACALEMIHTMSLIHDDLPFLDNDER---RRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDR-VVRAIAE 202 (354)
Q Consensus 127 ~lA~avEliH~asLIhDDI~viD~s~~---RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~-~~~~i~~ 202 (354)
-...++=++|.+.-+.+|+ .|-+.- |..+|-...+...+.|...+-.+...++-...-+ ++.. ..-++..
T Consensus 41 l~~l~~~l~~~a~~~~Nd~--~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~ 114 (279)
T PRK12884 41 LGFLTAFFASGSANALNDY--FDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI----SPLAFLVVILVS 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHhh--hhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHH
Confidence 3445567899999999997 565432 5566666656667777777766655555433322 1111 1111111
Q ss_pred HHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 037716 203 MCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDI 282 (354)
Q Consensus 203 l~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~ 282 (354)
+ .+=.--...+ ..+. +..+. .|..+..+...|....+......-.+.-+.--....+++..|+
T Consensus 115 ~----------~~~~Ys~~lK--~~~~--~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 177 (279)
T PRK12884 115 V----------LGILYNWKLK--EYGL--IGNLY---VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDI 177 (279)
T ss_pred H----------HHHHHHHhhc--cccc--hhHHH---HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111111111 1111 01111 1223444444554443332222222333344445566777888
Q ss_pred hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHH
Q 037716 283 LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSF 319 (354)
Q Consensus 283 lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~ 319 (354)
.|..+ |.+.|+.|+|+.+|.+.+...
T Consensus 178 ~D~e~-----------D~~~G~~Tl~v~~G~~~~~~~ 203 (279)
T PRK12884 178 EDVEG-----------DRLRGARTLAILYGEKIAGRI 203 (279)
T ss_pred hhhhh-----------HHHcCCeeechHhcHHHHHHH
Confidence 88743 667899999999988777654
No 40
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=60.56 E-value=12 Score=29.24 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 037716 258 NAIEVERVRNYARCIGLLFQVVD 280 (354)
Q Consensus 258 ~~~~~~~l~~~g~~lG~afQI~D 280 (354)
.+...+.+-+||..+|-+||+.=
T Consensus 14 Eet~~e~llRYGLf~GAIFQliC 36 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLIC 36 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999974
No 41
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=57.43 E-value=59 Score=31.13 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHH
Q 037716 272 IGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELL 324 (354)
Q Consensus 272 lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~ 324 (354)
...++.+.+|+.|+.+ |-+.|+.|+|+.+|.+.+...+.-..
T Consensus 172 ~~~a~~ii~~irDie~-----------Dr~~G~~Tlpv~lG~~~a~~~~~~l~ 213 (282)
T PRK13105 172 WGMASHAFGAVQDVVA-----------DREAGIASIATVLGARRTVRLAVGLY 213 (282)
T ss_pred HHHHHHHHHhCcchHh-----------HHHcCCccchHHhcHHHHHHHHHHHH
Confidence 3668899999999865 55679999999999988877654433
No 42
>PLN00012 chlorophyll synthetase; Provisional
Probab=55.40 E-value=32 Score=34.38 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHH
Q 037716 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAG 321 (354)
Q Consensus 270 ~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~ 321 (354)
--.++++-+.+|+.|+.+ |.+.|+.|+|+.+|.++++.++-
T Consensus 262 ~l~~lai~ivnd~~Die~-----------Dr~aG~~TLpV~~G~~~a~~l~~ 302 (375)
T PLN00012 262 SIAGLGIAIVNDFKSIEG-----------DRALGLQSLPVAFGVETAKWICV 302 (375)
T ss_pred HHHHHHHHHHhhhcchhh-----------HHHcCCcccceeechHHHHHHHH
Confidence 347888999999999854 66789999999999888776653
No 43
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=53.93 E-value=2e+02 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCC--C--CCC-CCCCCcccccChHHHHHHHHHHHHHHHHHHH
Q 037716 128 AACALEMIHTMSLIHDDLPFLDN--D--ERR-RSKPASHEVFGESTAILAGDALLSLALEHVA 185 (354)
Q Consensus 128 lA~avEliH~asLIhDDI~viD~--s--~~R-RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 185 (354)
+..++=++|.+.-+..|+ .|. | ..| +.+|...-+...+.|...+-.+...++-...
T Consensus 45 ~~~~~~l~~~a~~~~Nd~--~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 45 FTVGAILMRGAGCVINDI--WDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHhH--hhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556889999999987 554 3 223 3688888888888888888777766665443
No 44
>PLN02890 geranyl diphosphate synthase
Probab=49.84 E-value=1.1e+02 Score=31.16 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 263 ERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 263 ~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
..+...-+.|=.|.-|.||++| ..|.|.|++|+-..+|-..|--.-+-++..|...+..+
T Consensus 164 ~~~AaavEliH~ASLVHDDIiD------------~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~ 223 (422)
T PLN02890 164 QNIAEITEMIHVASLLHDDVLD------------DADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAAL 223 (422)
T ss_pred HHHHHHHHHHHHHHHHHccccc------------CCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcC
Confidence 3455566667778899999988 34788999999888877777666666667777666544
No 45
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=48.50 E-value=2.6e+02 Score=27.02 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCC---CCCC--CCCCcccccChHHHHHHHHHHHHHHHHHHH
Q 037716 128 AACALEMIHTMSLIHDDLPFLDND---ERRR--SKPASHEVFGESTAILAGDALLSLALEHVA 185 (354)
Q Consensus 128 lA~avEliH~asLIhDDI~viD~s---~~RR--G~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 185 (354)
...+.=++|.++-+..|+ .|.+ ..+| .+|........+.|+..+-.+...++-.+.
T Consensus 77 ~~l~~~l~~~a~~~~Nd~--~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 77 FFVGAIAMRGAGCTYNDI--VDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556899999999887 5542 2344 588888888888888777776666555554
No 46
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=45.43 E-value=2.7e+02 Score=26.22 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCC---CCCCCCcccccChHHHHHHHHHHHHHHHHHH
Q 037716 128 AACALEMIHTMSLIHDDLPFLDNDER---RRSKPASHEVFGESTAILAGDALLSLALEHV 184 (354)
Q Consensus 128 lA~avEliH~asLIhDDI~viD~s~~---RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l 184 (354)
...++=++|.+.-+.+|+ .|-+.- ++.+|....+-..+.|...+-.++..++-..
T Consensus 42 ~~l~~~l~~~~~~~iNd~--~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~ 99 (279)
T PRK09573 42 AALVVFLVCAGGNVINDI--YDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILS 99 (279)
T ss_pred HHHHHHHHHHHHHHHHhh--cccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 344566899999999997 565433 3678888888888999998888877776443
No 47
>PLN02857 octaprenyl-diphosphate synthase
Probab=44.57 E-value=55 Score=33.16 Aligned_cols=44 Identities=30% Similarity=0.389 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHH
Q 037716 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIEN 315 (354)
Q Consensus 260 ~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~ 315 (354)
+....+...-+.+=.|.-|.||++| .+|++.|++|.-..+|...
T Consensus 161 ~~~~~lAaaiEliH~ASLIHDDI~D------------~s~~RRG~pt~h~~~G~~~ 204 (416)
T PLN02857 161 TEHRRLAEITEMIHTASLIHDDVLD------------ESDMRRGKETVHQLYGTRV 204 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccc------------CCcccCCCCCccccCCcce
Confidence 4444555566667778889999988 3477788888776654433
No 48
>PRK13595 ubiA prenyltransferase; Provisional
Probab=42.87 E-value=1.8e+02 Score=28.07 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHH
Q 037716 244 LEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGEL 323 (354)
Q Consensus 244 f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~ 323 (354)
+..+...|+...|......- + -...-.+++|++.-|+.|+.+ |.+.|..|.|+.+|.+.+-..+.-.
T Consensus 155 ~g~p~~~~~~~~g~~~~~~~-l-~a~~~w~~g~dii~ai~Dieg-----------Dr~~Gi~Slpv~lG~r~a~~~a~~~ 221 (292)
T PRK13595 155 YALPLALPALALGAPVPWPP-L-LALMAWSVGKHAFDAAQDIPA-----------DRAAGTRTVATTLGVRGTALYALAW 221 (292)
T ss_pred HHHHHHHHHHHcCCcchHHH-H-HHHHHHHHHHHHHHhccChHh-----------HHHcCCeechHHhCcHhHHHHHHHH
Confidence 45666677666664322211 1 223345589999999999754 6668999999999998887776655
Q ss_pred HHHHHHHh
Q 037716 324 LGQAIEEL 331 (354)
Q Consensus 324 ~~~A~~~L 331 (354)
.--+.-.+
T Consensus 222 ~~~a~~~~ 229 (292)
T PRK13595 222 FLLAGALL 229 (292)
T ss_pred HHHHHHHH
Confidence 44444433
No 49
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=42.64 E-value=3.2e+02 Score=26.34 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCC---CCCCCcccccChHHHHHHHHHHHHHHHHH
Q 037716 131 ALEMIHTMSLIHDDLPFLDNDERR---RSKPASHEVFGESTAILAGDALLSLALEH 183 (354)
Q Consensus 131 avEliH~asLIhDDI~viD~s~~R---RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~ 183 (354)
+.=++|.++.+.+|+ .|.+.-| +.+|...-+...+.|...+-.++..++-.
T Consensus 73 ~~~l~~~~~~~~Nd~--~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l 126 (314)
T PRK07566 73 AGPLLCGTSQTLNDY--FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAV 126 (314)
T ss_pred HHHHHHHHHHHHhhh--hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHH
Confidence 345789999999997 6765434 56777777778888888877776666543
No 50
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=39.13 E-value=3.1e+02 Score=25.16 Aligned_cols=112 Identities=16% Similarity=0.026 Sum_probs=66.3
Q ss_pred hhhhhhhhhhhhccC--CCCCHHHHHHHHHhchH-HHHHHHH-HHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHhh
Q 037716 210 EGLVAGEFVDIASEG--KDVSLKELEYIHVHKTA-KLLEAAV-VCGAVIGGGNA---IEVERVRNYARCIGLLFQVVDDI 282 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~--~~~~~~~~~~i~~~KTg-~Lf~~~~-~~ga~lag~~~---~~~~~l~~~g~~lG~afQI~DD~ 282 (354)
...+.|...+..+.. ..++.++|..+- ..|+ ..+.+.+ ..+.-. ..++ .....+..+....+..-=+.||+
T Consensus 132 ~~~~~~~~~e~~~~~~~~~p~~~eYl~~R-~~~~g~~~~~~l~~~~~g~-~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl 209 (284)
T cd00868 132 KDLLRAYLVEAKWANEGYVPSFEEYLENR-RVSIGYPPLLALSFLGMGD-ILPEEAFEWLPSYPKLVRASSTIGRLLNDI 209 (284)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHhc-eehhhHHHHHHHHHHHcCC-CCCHHHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 455666666665543 238899988774 4454 3332222 221111 1233 34456778888888888889999
Q ss_pred hhhcCChhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHhhcc
Q 037716 283 LDVTKSSEELGKTAGKDLASGK-ATYPKLM------GIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 283 lD~~~~~~~~GK~~g~Dl~~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~~l 334 (354)
..+..+. ..|. .+++.++ .++.|.+.+.+.++++++.+..+
T Consensus 210 ~S~~kE~-----------~~g~~~N~v~vl~~~~~~~~~eA~~~~~~~~~~~~~~~~~~ 257 (284)
T cd00868 210 ASYEKEI-----------ARGEVANSVECYMKEYGVSEEEALEELRKMIEEAWKELNEE 257 (284)
T ss_pred hHHHHHH-----------ccCCcccHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8885332 1232 3666665 46667777777777777665543
No 51
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=38.16 E-value=3.9e+02 Score=26.09 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHH
Q 037716 265 VRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAG 321 (354)
Q Consensus 265 l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~ 321 (354)
+.-+.--+..++-+.+|+.|..+ |.+.|+.|+|+.+|.+.+..++-
T Consensus 185 l~~~~~l~~~~~~~i~d~~D~eg-----------D~~~G~kTlpV~~G~~~a~~i~~ 230 (331)
T PRK12392 185 LAGLNFFMAIALIIMNDFKSVEG-----------DKEGGLKSLTVMIGAKNTFLVSF 230 (331)
T ss_pred HHHHHHHHHHHHHHHHcccchhh-----------HHHcCCeeeEeEEcHhhHHHHHH
Confidence 33444456677888889988754 66789999999998877765543
No 52
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=30.90 E-value=1.9e+02 Score=27.28 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCC----C-CCCCCCcccccChHHHHHHHHHHH
Q 037716 128 AACALEMIHTMSLIHDDLPFLDNDE----R-RRSKPASHEVFGESTAILAGDALL 177 (354)
Q Consensus 128 lA~avEliH~asLIhDDI~viD~s~----~-RRG~pt~h~~~G~~~AIl~GD~Ll 177 (354)
...+.=++|.+..+.+|+ .|.+. . .+.+|-.-.....+.|...+-.+.
T Consensus 41 ~~l~~~l~~~a~~~~Nd~--~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 93 (282)
T TIGR01475 41 ILIAAVSARTAAMAFNRI--IDRAIDARNPRTKNRPLVSGLISKKEARTMIILSL 93 (282)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 344556889999999887 55432 2 246787777778888877775544
No 53
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=29.71 E-value=3.1e+02 Score=27.52 Aligned_cols=66 Identities=29% Similarity=0.318 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 257 GNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 257 ~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
........+..+.+-|=++-=|.||+ +|= .|++.||+|--.++|-..|-=.=+-++..|-+.|..+
T Consensus 125 g~~~~q~~~A~i~EMIHtaSLIHDDv~~mD~------------~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l 192 (384)
T KOG0776|consen 125 GDESSQRSLAEIVEMIHTASLIHDDVPCMDD------------ADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASL 192 (384)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcccccc------------cccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhc
Confidence 45555678888889999999999999 662 3777888887777765554444455556666666655
No 54
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=29.56 E-value=1.8e+02 Score=27.82 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHH
Q 037716 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA 185 (354)
Q Consensus 125 ~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 185 (354)
...++.++=+.-.+.++..++|.+|.|. +.|+-|.-.++|.+.|....-.++..++-.+.
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr-~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADR-EAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHH-HcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666778889999998666664 57999999999999998887777766665544
No 55
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=29.36 E-value=32 Score=32.56 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHH
Q 037716 273 GLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGE 322 (354)
Q Consensus 273 G~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~ 322 (354)
..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++.++.-
T Consensus 174 ~~~i~~~nd~~D~~~-----------D~~~G~~Tl~v~lG~~~a~~l~~~ 212 (283)
T TIGR01476 174 AHGIMTLNDFKSVEG-----------DRQLGLRSLPVMIGVKRAAIVAVT 212 (283)
T ss_pred HHHHHHHHhccchhh-----------HHHcCCcCcceEEcHHHHHHHHHH
Confidence 344678899999854 667899999999998888765444
No 56
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=27.89 E-value=1.5e+02 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHH
Q 037716 268 YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGE 322 (354)
Q Consensus 268 ~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~ 322 (354)
+.--.-.++.+..|+.|..+ |.+.|+.|+|+.+|.+.+..++.-
T Consensus 190 ~~~~~~~~~~l~~di~D~eg-----------D~~~Gi~Tlav~lG~~~a~~l~~~ 233 (308)
T PRK12887 190 FVLVFTFAIAIFKDIPDMEG-----------DRQYQITTFTLRLGKQAVFKLSCW 233 (308)
T ss_pred HHHHHHHHHHHHHhccchhh-----------HHHcCCcchhHHHhHHHHHHHHHH
Confidence 44455567888899999854 667899999999988887755433
No 57
>PLN02878 homogentisate phytyltransferase
Probab=27.64 E-value=1e+02 Score=29.62 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 268 YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 268 ~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
|..-+..+.-+..|+.|+.| |.+.|..|+|+.+|.+++..++--...-|-
T Consensus 164 f~~~f~~~i~i~KDi~DieG-----------D~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY 213 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEG-----------DRIFGIRSFSVRLGQKRVFWLCVNLLEMAY 213 (280)
T ss_pred HHHHHHHHHHHHhhCcCchh-----------HHHCCCceechhhChHHHHHHHHHHHHHHH
Confidence 44444555568999999876 455789999999999988877665555444
No 58
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=26.42 E-value=2.9e+02 Score=26.01 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHH
Q 037716 128 AACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDAL 176 (354)
Q Consensus 128 lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~L 176 (354)
++..+-+.-.+.+..+|++.++ .|.+.|++|.-..+|.+.+...--.+
T Consensus 166 ~~~~~~l~~~~i~~~nd~~D~~-~D~~~G~~Tl~v~lG~~~a~~l~~~l 213 (283)
T TIGR01476 166 VALIYSLGAHGIMTLNDFKSVE-GDRQLGLRSLPVMIGVKRAAIVAVTT 213 (283)
T ss_pred HHHHHHHHHHHHHHHHhccchh-hHHHcCCcCcceEEcHHHHHHHHHHH
Confidence 3444555666678889986343 44567999999999999877654443
No 59
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=25.87 E-value=5.6e+02 Score=24.10 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCC----CC-CCCCCcccccChHHHHHHHHHHHHHHHHHH
Q 037716 130 CALEMIHTMSLIHDDLPFLDNDE----RR-RSKPASHEVFGESTAILAGDALLSLALEHV 184 (354)
Q Consensus 130 ~avEliH~asLIhDDI~viD~s~----~R-RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l 184 (354)
.++=++|.+..+..|+ .|.+- .| |.+|..--+-..+.|+..+-.++..++-..
T Consensus 49 ~g~~l~~~a~~~~Nd~--~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~ 106 (282)
T PRK12848 49 LGVFLMRAAGCVINDY--ADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLV 106 (282)
T ss_pred HHHHHHHHHHHHHHhh--HHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3444889999999997 56432 23 468888888888999988888877776543
No 60
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=25.69 E-value=6e+02 Score=24.33 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCC---CCCCCcccccChHHHHHHHHHHHHHHHHH
Q 037716 130 CALEMIHTMSLIHDDLPFLDNDERR---RSKPASHEVFGESTAILAGDALLSLALEH 183 (354)
Q Consensus 130 ~avEliH~asLIhDDI~viD~s~~R---RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~ 183 (354)
.+.=++|.++-+++|+ .|.+.-| |.+|...-....+.++..+-.++..++-.
T Consensus 61 l~~~l~~~~~n~~NDy--~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~l 115 (306)
T TIGR02056 61 LSGPCLTGYTQTINDF--YDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAI 115 (306)
T ss_pred HHHHHHHHHHHHHHhH--hhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 4556899999999997 6755333 45666666677788877776665554433
No 61
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=23.40 E-value=85 Score=25.42 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhhcCChhhhCCc
Q 037716 274 LLFQVVDDILDVTKSSEELGKT 295 (354)
Q Consensus 274 ~afQI~DD~lD~~~~~~~~GK~ 295 (354)
-..+|.+|++|++-....-|++
T Consensus 45 ~~~~il~dildlfEe~aadG~~ 66 (103)
T PF06304_consen 45 DMMEILSDILDLFEEAAADGKS 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4569999999999877777776
No 62
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=22.33 E-value=88 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHH
Q 037716 271 CIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFA 320 (354)
Q Consensus 271 ~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~ 320 (354)
-...++.+.+++.|+. .|.+.|+.|+|+.+|.+.+...+
T Consensus 176 l~~~~~~~in~i~Die-----------~D~~aGi~Tlav~lG~~~a~~~~ 214 (282)
T PRK12875 176 LWAMGMHTFSAIPDIE-----------PDRAAGIRTTATVLGERRTYAYC 214 (282)
T ss_pred HHHHHHHHHHhccCHH-----------HHHHcCCccchhhccHhhHHHHH
Confidence 4456667777888764 37778999999999988877543
No 63
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=20.82 E-value=2.8e+02 Score=26.45 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHH
Q 037716 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILA 172 (354)
Q Consensus 133 EliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~ 172 (354)
=+...+.++..++|.+++| .|.|++|.-.++|.+.+...
T Consensus 175 ~l~~~~~~~in~i~Die~D-~~aGi~Tlav~lG~~~a~~~ 213 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPD-RAAGIRTTATVLGERRTYAY 213 (282)
T ss_pred HHHHHHHHHHHhccCHHHH-HHcCCccchhhccHhhHHHH
Confidence 3666666788888744444 57899999999999988643
No 64
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=20.35 E-value=6.3e+02 Score=22.67 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhhcCC
Q 037716 273 GLLFQVVDDILDVTKS 288 (354)
Q Consensus 273 G~afQI~DD~lD~~~~ 288 (354)
.+.++||+|+.|+-++
T Consensus 59 ~~L~~IQ~~LF~lG~d 74 (184)
T COG2096 59 AILRRIQNDLFDLGAD 74 (184)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5678999999998554
Done!