Query 037716
Match_columns 354
No_of_seqs 233 out of 1514
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ts7_A Geranyltranstransferase 100.0 4.5E-71 1.5E-75 531.5 33.1 295 59-354 4-302 (324)
2 4f62_A Geranyltranstransferase 100.0 3.6E-71 1.2E-75 530.7 32.1 291 62-354 3-295 (317)
3 3lsn_A Geranyltranstransferase 100.0 7.4E-71 2.5E-75 526.7 32.2 292 62-354 1-296 (304)
4 2h8o_A Geranyltranstransferase 100.0 2.1E-70 7.3E-75 529.6 28.6 313 38-354 16-335 (335)
5 3lom_A Geranyltranstransferase 100.0 6.7E-70 2.3E-74 521.7 29.4 288 64-353 9-302 (313)
6 3m0g_A Farnesyl diphosphate sy 100.0 4.1E-70 1.4E-74 520.0 26.3 287 62-354 1-289 (297)
7 3p8l_A Geranyltranstransferase 100.0 1.7E-69 5.9E-74 516.5 28.8 287 64-352 10-302 (302)
8 1rqj_A Geranyltranstransferase 100.0 5E-69 1.7E-73 514.0 31.6 293 62-354 1-299 (299)
9 3p8r_A Geranyltranstransferase 100.0 1.1E-69 3.7E-74 518.5 25.3 287 67-354 12-302 (302)
10 3uca_A Geranyltranstransferase 100.0 6.8E-69 2.3E-73 516.4 29.2 286 66-354 35-324 (324)
11 3pde_A Farnesyl-diphosphate sy 100.0 1.1E-69 3.8E-74 518.7 22.5 291 62-354 6-300 (309)
12 1rtr_A Geranyltranstransferase 100.0 3.5E-68 1.2E-72 508.3 29.3 288 62-354 4-293 (301)
13 3llw_A Geranyltranstransferase 100.0 6E-68 2.1E-72 507.8 28.3 289 60-353 4-304 (311)
14 3oyr_A Trans-isoprenyl diphosp 100.0 3.3E-65 1.1E-69 495.4 30.8 284 58-353 21-344 (345)
15 2j1p_A Geranylgeranyl pyrophos 100.0 8.3E-65 2.8E-69 483.4 31.0 280 61-354 10-293 (293)
16 3npk_A Geranyltranstransferase 100.0 9.7E-65 3.3E-69 481.4 27.6 276 72-351 6-284 (291)
17 2ftz_A Geranyltranstransferase 100.0 4.7E-65 1.6E-69 482.3 25.1 269 70-352 13-284 (284)
18 3mzv_A Decaprenyl diphosphate 100.0 1.4E-64 4.9E-69 490.8 29.0 283 61-354 11-333 (341)
19 1wy0_A Geranylgeranyl pyrophos 100.0 9E-64 3.1E-68 486.3 29.0 285 64-354 7-342 (342)
20 3lmd_A Geranylgeranyl pyrophos 100.0 1.1E-63 3.9E-68 486.6 27.3 281 61-354 33-352 (360)
21 4dhd_A Polyprenyl synthetase; 100.0 2.1E-63 7.2E-68 485.5 27.2 281 62-354 4-336 (358)
22 3rmg_A Octaprenyl-diphosphate 100.0 2.4E-63 8.3E-68 481.1 25.5 279 63-354 8-326 (334)
23 3nf2_A Putative polyprenyl syn 100.0 1.5E-62 5.3E-67 478.2 28.6 282 63-353 4-343 (352)
24 3aqb_B Component B of hexapren 100.0 1.4E-62 4.8E-67 474.7 27.5 281 62-354 4-325 (325)
25 3pko_A Geranylgeranyl pyrophos 100.0 4.9E-63 1.7E-67 479.0 23.6 278 65-354 18-334 (334)
26 3ipi_A Geranyltranstransferase 100.0 2.1E-62 7.2E-67 466.5 23.9 263 73-353 12-283 (295)
27 3apz_A Geranyl diphosphate syn 100.0 2.3E-62 8E-67 477.4 23.6 277 66-354 12-348 (348)
28 1wmw_A Geranylgeranyl diphosph 100.0 5.3E-61 1.8E-65 464.6 26.1 275 69-354 6-330 (330)
29 3lk5_A Geranylgeranyl pyrophos 100.0 1.5E-59 5.2E-64 461.1 28.4 258 90-353 49-372 (380)
30 1v4e_A Octoprenyl-diphosphate 100.0 1.2E-59 4.1E-64 448.9 21.0 230 68-316 9-239 (299)
31 2azj_A Geranylgeranyl pyrophos 100.0 4.1E-59 1.4E-63 442.9 24.0 266 61-353 8-280 (289)
32 3tc1_A Octaprenyl pyrophosphat 100.0 3.2E-59 1.1E-63 448.5 22.6 265 69-350 3-307 (315)
33 2qis_A Farnesyl pyrophosphate 100.0 1.1E-58 3.8E-63 454.8 25.3 284 63-354 34-374 (374)
34 2q80_A Geranylgeranyl pyrophos 100.0 3.1E-59 1E-63 446.6 19.0 257 80-354 3-297 (301)
35 2e8v_A Geranylgeranyl pyrophos 100.0 1.5E-58 5E-63 449.0 21.0 236 74-316 9-250 (340)
36 1yhl_A Farnesyl pyrophosphate 100.0 4.8E-58 1.6E-62 449.2 24.5 284 63-354 3-362 (362)
37 2ihi_A Pyrophosphate synthase; 100.0 6.5E-58 2.2E-62 451.3 22.2 284 61-352 33-394 (395)
38 1uby_A FPS, farnesyl diphospha 100.0 1.3E-57 4.6E-62 446.1 23.7 283 64-354 28-367 (367)
39 3dyh_A Farnesyl pyrophosphate 100.0 2.7E-57 9.4E-62 446.7 23.1 283 64-354 29-390 (390)
40 3kra_B Geranyl diphosphate syn 100.0 4.2E-56 1.4E-60 419.4 25.3 254 65-346 2-258 (274)
41 3mav_A Farnesyl pyrophosphate 100.0 3E-56 1E-60 440.8 22.5 281 61-352 33-390 (395)
42 2her_A Fragment, farnesyl pyro 100.0 2.9E-57 9.8E-62 442.1 13.3 279 61-352 25-354 (368)
43 3qkc_B Geranyl diphosphate syn 100.0 6.9E-54 2.4E-58 404.2 28.9 254 62-349 4-259 (273)
44 2q58_A Fragment, farnesyl pyro 100.0 4.3E-56 1.5E-60 435.7 14.0 295 45-353 12-359 (368)
45 4fp4_A Polyprenyl synthetase; 100.0 2.3E-54 7.8E-59 407.8 14.5 219 63-303 5-226 (285)
46 4hd1_A Squalene synthase HPNC; 95.5 0.68 2.3E-05 43.0 17.2 109 210-337 107-237 (294)
47 3vj8_A Squalene synthase; farn 95.0 0.57 1.9E-05 44.7 15.2 112 211-336 122-255 (343)
48 3acx_A Dehydrosqualene synthas 94.6 0.41 1.4E-05 44.4 12.7 113 210-340 111-245 (293)
49 3kb9_A EPI-isozizaene synthase 89.2 13 0.00043 35.5 16.0 111 210-332 187-309 (382)
50 4fp4_A Polyprenyl synthetase; 88.4 2.2 7.5E-05 39.6 9.5 66 258-335 66-131 (285)
51 3rmg_A Octaprenyl-diphosphate 86.4 4.8 0.00016 38.1 10.8 71 252-334 59-129 (334)
52 3mzv_A Decaprenyl diphosphate 85.6 4.2 0.00015 38.5 10.0 75 249-335 62-136 (341)
53 3lmd_A Geranylgeranyl pyrophos 84.2 3.8 0.00013 39.2 9.0 74 250-335 84-158 (360)
54 3nf2_A Putative polyprenyl syn 83.3 4 0.00014 38.9 8.7 76 249-336 63-138 (352)
55 2ftz_A Geranyltranstransferase 83.1 5.9 0.0002 36.6 9.6 68 256-335 62-131 (284)
56 3m0g_A Farnesyl diphosphate sy 83.0 6.4 0.00022 36.6 9.9 73 250-334 51-125 (297)
57 3pko_A Geranylgeranyl pyrophos 83.0 7.2 0.00025 36.8 10.3 72 251-334 66-138 (334)
58 3aqb_B Component B of hexapren 82.6 5.8 0.0002 37.2 9.5 74 249-334 53-126 (325)
59 4f62_A Geranyltranstransferase 82.5 7.8 0.00027 36.4 10.3 67 256-334 61-129 (317)
60 2q80_A Geranylgeranyl pyrophos 81.9 9 0.00031 35.5 10.5 68 256-335 41-108 (301)
61 1wmw_A Geranylgeranyl diphosph 81.2 9.1 0.00031 35.9 10.3 73 250-334 49-121 (330)
62 2azj_A Geranylgeranyl pyrophos 81.0 6.8 0.00023 36.2 9.2 73 251-335 60-133 (289)
63 1ps1_A Pentalenene synthase; a 80.8 35 0.0012 31.4 15.9 111 210-332 144-267 (337)
64 1v4e_A Octoprenyl-diphosphate 80.7 7.5 0.00026 36.1 9.4 65 258-334 59-123 (299)
65 1wy0_A Geranylgeranyl pyrophos 80.0 5.7 0.0002 37.5 8.5 70 253-334 59-128 (342)
66 1yyq_A Trichodiene synthase; t 79.2 45 0.0015 31.8 15.2 128 99-243 56-188 (374)
67 2e8v_A Geranylgeranyl pyrophos 78.8 11 0.00039 35.4 10.2 69 256-336 56-124 (340)
68 1rqj_A Geranyltranstransferase 77.2 17 0.00059 33.5 10.8 72 251-334 55-128 (299)
69 3lsn_A Geranyltranstransferase 76.1 10 0.00035 35.3 8.8 73 251-335 55-129 (304)
70 4dhd_A Polyprenyl synthetase; 75.9 6.3 0.00022 37.6 7.5 63 258-332 63-125 (358)
71 3lom_A Geranyltranstransferase 74.5 15 0.00052 34.2 9.6 73 250-334 60-134 (313)
72 1di1_A Aristolochene synthase; 74.4 49 0.0017 29.7 16.1 100 227-332 152-261 (300)
73 3ts7_A Geranyltranstransferase 74.3 9.6 0.00033 35.9 8.2 71 253-335 63-135 (324)
74 3ipi_A Geranyltranstransferase 74.3 3 0.0001 38.8 4.6 65 258-334 60-124 (295)
75 3p8l_A Geranyltranstransferase 74.0 15 0.00051 34.1 9.4 62 261-334 72-135 (302)
76 2j1p_A Geranylgeranyl pyrophos 73.4 22 0.00076 32.7 10.4 70 253-334 65-136 (293)
77 1rtr_A Geranyltranstransferase 73.2 16 0.00054 33.9 9.3 70 253-334 55-126 (301)
78 3pde_A Farnesyl-diphosphate sy 72.9 16 0.00056 34.0 9.4 67 256-334 64-134 (309)
79 3oyr_A Trans-isoprenyl diphosp 72.7 6.5 0.00022 37.3 6.6 74 249-334 74-147 (345)
80 3llw_A Geranyltranstransferase 71.6 8.5 0.00029 36.0 7.1 62 260-333 74-137 (311)
81 3g4d_A (+)-delta-cadinene synt 70.5 45 0.0016 33.6 12.6 111 210-333 376-500 (554)
82 2h8o_A Geranyltranstransferase 70.1 29 0.001 32.6 10.5 72 251-334 96-169 (335)
83 3n0f_A Isoprene synthase; terp 69.1 58 0.002 32.9 13.0 110 211-333 375-498 (555)
84 3p8r_A Geranyltranstransferase 68.6 8.3 0.00029 35.8 6.3 74 249-334 59-134 (302)
85 3npk_A Geranyltranstransferase 67.2 32 0.0011 31.7 9.9 64 259-334 59-124 (291)
86 2q58_A Fragment, farnesyl pyro 67.0 16 0.00056 34.8 8.2 58 265-334 100-157 (368)
87 3m00_A Aristolochene synthase; 67.0 87 0.003 31.5 13.8 111 210-333 372-495 (550)
88 3uca_A Geranyltranstransferase 66.9 9.8 0.00033 35.8 6.4 72 250-333 84-157 (324)
89 3bny_A Aristolochene synthase; 65.2 81 0.0028 28.6 15.5 60 227-287 166-226 (320)
90 3v1v_A 2-MIB synthase, 2-methy 64.1 36 0.0012 33.1 10.1 76 210-287 265-345 (433)
91 3kra_B Geranyl diphosphate syn 63.5 12 0.00042 34.1 6.3 74 251-335 51-124 (274)
92 3tc1_A Octaprenyl pyrophosphat 62.9 20 0.00068 33.5 7.7 60 264-335 61-120 (315)
93 3apz_A Geranyl diphosphate syn 62.8 35 0.0012 32.0 9.6 58 265-334 92-149 (348)
94 3lk5_A Geranylgeranyl pyrophos 62.4 27 0.00093 33.4 8.7 64 259-334 87-166 (380)
95 3qkc_B Geranyl diphosphate syn 56.0 21 0.00072 32.5 6.4 72 250-334 55-126 (273)
96 2ong_A 4S-limonene synthase; m 50.6 2E+02 0.0069 28.6 15.2 109 212-333 367-489 (543)
97 2ihi_A Pyrophosphate synthase; 49.1 44 0.0015 32.1 7.8 55 267-333 112-168 (395)
98 2her_A Fragment, farnesyl pyro 48.7 28 0.00095 33.3 6.2 62 260-333 95-159 (368)
99 1n1b_A (+)-bornyl diphosphate 41.8 1E+02 0.0036 30.8 9.5 109 213-333 374-496 (549)
100 3p5p_A Taxadiene synthase; cla 36.1 2E+02 0.0069 30.1 10.8 110 211-333 577-701 (764)
101 3s9v_A Abietadiene synthase, c 33.4 1.8E+02 0.0061 30.6 9.9 109 212-333 609-732 (785)
102 2j5c_A 1,8-cineole synthase; t 33.1 1.5E+02 0.0052 29.8 9.1 108 212-332 394-515 (569)
103 3sdr_A Alpha-bisabolene syntha 32.0 1.4E+02 0.0046 31.6 8.8 110 211-333 636-763 (817)
104 2qis_A Farnesyl pyrophosphate 31.7 1.1E+02 0.0036 29.1 7.3 36 267-314 111-146 (374)
105 1yhl_A Farnesyl pyrophosphate 31.2 1.1E+02 0.0039 28.6 7.4 55 268-334 86-142 (362)
106 1uby_A FPS, farnesyl diphospha 30.9 1.3E+02 0.0043 28.5 7.7 38 264-313 101-138 (367)
107 3aqb_A Component A of hexapren 24.8 69 0.0024 26.3 3.8 37 134-187 53-90 (147)
108 3mav_A Farnesyl pyrophosphate 20.6 2.7E+02 0.0092 26.4 7.9 47 258-316 100-149 (395)
No 1
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=4.5e-71 Score=531.48 Aligned_cols=295 Identities=41% Similarity=0.652 Sum_probs=261.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHH
Q 037716 59 LPTFPFEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIH 136 (354)
Q Consensus 59 ~~~~~~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH 136 (354)
++.++|..+++.....|++.|.+.++.. .|..+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||
T Consensus 4 ~~~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH 83 (324)
T 3ts7_A 4 NPERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIH 83 (324)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999763 46789999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhhhhh
Q 037716 137 TMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNI-AGVSPDRVVRAIAEMCSAMGVEGLVAG 215 (354)
Q Consensus 137 ~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~i~~l~~a~g~~~~~~G 215 (354)
+|||||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+|+.|
T Consensus 84 ~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~G 163 (324)
T 3ts7_A 84 VYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGG 163 (324)
T ss_dssp HHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999863 244566678899999998887899999
Q ss_pred hhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCC
Q 037716 216 EFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGK 294 (354)
Q Consensus 216 Q~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK 294 (354)
|.+|+.+....+++++|.+|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 164 Q~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK 243 (324)
T 3ts7_A 164 QAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGK 243 (324)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCC
Confidence 99999998777899999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 295 TAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 295 ~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+.|+|+++||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..+++|+++|++
T Consensus 244 ~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 244 TRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP-EADLLRELARFIIQRQS 302 (324)
T ss_dssp ---------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG-GGHHHHHHHHHHHHTSS
T ss_pred CccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999976 37899999999999974
No 2
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=3.6e-71 Score=530.71 Aligned_cols=291 Identities=44% Similarity=0.690 Sum_probs=248.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHh
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQP-PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSL 140 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~-p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 140 (354)
|+|..+++.....|++.|++.++... |+.+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||+|||
T Consensus 3 m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aSL 82 (317)
T 4f62_A 3 MNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSL 82 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999997632 67899999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 037716 141 IHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDI 220 (354)
Q Consensus 141 IhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl 220 (354)
||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++. .+.+++...+++..+++++|..+|+.||.+|+
T Consensus 83 IHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl 161 (317)
T 4f62_A 83 IHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQMIDL 161 (317)
T ss_dssp HHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999885 34456667889999999988778999999999
Q ss_pred hccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 221 ASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 221 ~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
.+.+..+++++|..|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||+.|+|
T Consensus 162 ~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D 241 (317)
T 4f62_A 162 SSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSD 241 (317)
T ss_dssp HTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred hccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchH
Confidence 998767899999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 300 l~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+++||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..+++|+++|++
T Consensus 242 l~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 242 AEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999975 67999999999999974
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=7.4e-71 Score=526.66 Aligned_cols=292 Identities=42% Similarity=0.698 Sum_probs=260.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC--chhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMS 139 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~--p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 139 (354)
|+|..+++.....|++.|.+.++... |+.+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||+||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~as 80 (304)
T 3lsn_A 1 MSLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYS 80 (304)
T ss_dssp -CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999998653 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
|||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++... +.+++...+++..+++++|..+|+.||.+
T Consensus 81 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~l 160 (304)
T 3lsn_A 81 LVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAI 160 (304)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHH
Confidence 99999999999999999999999999999999999999999999998632 34566678889999998877789999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGG-NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
|+.+....+++++|..|+.+|||+||++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+||+.|
T Consensus 161 Dl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g 240 (304)
T 3lsn_A 161 DLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQG 240 (304)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcc
Confidence 999987779999999999999999999999999999999 8889999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+|+++||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..+++|+++|.+
T Consensus 241 ~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 241 ADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARYIVERRS 296 (304)
T ss_dssp -------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHC---
T ss_pred cHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999976 58999999999999963
No 4
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.1e-70 Score=529.63 Aligned_cols=313 Identities=35% Similarity=0.529 Sum_probs=255.7
Q ss_pred cchhhhhhccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCC-------CchhHHHHHHHhHhCCCccchHHH
Q 037716 38 FSKKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQ-------PPVKIHKAMRYSLLAGGKRVRPLL 110 (354)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~-------~p~~l~~~~~y~~~~gGKrlRp~l 110 (354)
.||..+|+.++.+..... ....+|..++++..+.|++.|++.++.. .|..+.++++|.+..||||+||+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L 92 (335)
T 2h8o_A 16 ITKRFACIRPACQRARMD---AQMTNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFL 92 (335)
T ss_dssp -----------------C---HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred Ccchheeeccchhhhccc---cchHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHH
Confidence 477888876665554432 1235678888989999999999999762 466799999999999999999999
Q ss_pred HHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccC
Q 037716 111 CIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG 190 (354)
Q Consensus 111 ~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~ 190 (354)
++++++++|++.+.+.++|++|||||+|||||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++...+
T Consensus 93 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~ 172 (335)
T 2h8o_A 93 VIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNP 172 (335)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999985334
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 037716 191 VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYAR 270 (354)
Q Consensus 191 ~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~ 270 (354)
.+++...+++..+++++|..+++.||.+|+.+....+++++|.+|+.+|||+||++||++|++++|++++.++.+++||.
T Consensus 173 ~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~ 252 (335)
T 2h8o_A 173 LAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGE 252 (335)
T ss_dssp SCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55667778999999998888999999999998766689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 037716 271 CIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIA 350 (354)
Q Consensus 271 ~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~ 350 (354)
++|++|||+||++|++++++.+||+.|+|+++||+|||++++++++++.++++.++|++.|+.|+. .++.|..|++|++
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~i~ 331 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFIA 331 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999975 6789999999999
Q ss_pred hccC
Q 037716 351 SRQN 354 (354)
Q Consensus 351 ~R~~ 354 (354)
+|++
T Consensus 332 ~R~~ 335 (335)
T 2h8o_A 332 ERKS 335 (335)
T ss_dssp C---
T ss_pred hccC
Confidence 9974
No 5
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=6.7e-70 Score=521.71 Aligned_cols=288 Identities=33% Similarity=0.504 Sum_probs=256.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhh
Q 037716 64 FEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141 (354)
Q Consensus 64 ~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 141 (354)
|..+++.....|++.|++.++.. .|+.+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||+||||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 88 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLI 88 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999764 4678999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCCh-HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 037716 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSP-DRVVRAIAEMCSAMGVEGLVAGEFVDI 220 (354)
Q Consensus 142 hDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~-~~~~~~i~~l~~a~g~~~~~~GQ~lDl 220 (354)
|||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++...+.++ +...+++..+++++|..+|+.||.+|+
T Consensus 89 HDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl 168 (313)
T 3lom_A 89 HDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDL 168 (313)
T ss_dssp HHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred hCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999986434444 567789999999988789999999999
Q ss_pred hccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 221 ASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGG--GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 221 ~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
.+..+ .+++++|..|+++|||+||+++|++ ++++| ++++.++.+++||.++|+||||+||++|++++++.+|||.|
T Consensus 169 ~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g 247 (313)
T 3lom_A 169 SELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRS 247 (313)
T ss_dssp HTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCc
Confidence 99876 5899999999999999999999999 99999 89999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcc
Q 037716 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQ 353 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~ 353 (354)
+|+++||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..|++|+++|.
T Consensus 248 ~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 248 SDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS-KAAALIELTKQLQNRS 302 (313)
T ss_dssp ------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG-GGHHHHHHHHHHHHHH
T ss_pred chhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999975 4789999999999996
No 6
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=4.1e-70 Score=520.00 Aligned_cols=287 Identities=38% Similarity=0.583 Sum_probs=245.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhh
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 141 (354)
|+|.+|++.....|++.|++.++...|..+.++++|. ..||||+||++++++++++|++.+.+.++|++|||||+||||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLI 79 (297)
T 3m0g_A 1 MSLSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLV 79 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999876567899999999 899999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 037716 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIA 221 (354)
Q Consensus 142 hDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~ 221 (354)
|||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++.... +++...+++..+++++|..+|+.||.+|+.
T Consensus 80 HDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~ 158 (297)
T 3m0g_A 80 HDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLG-SAENRVALVAALAQASGAEGMVYGQALDIA 158 (297)
T ss_dssp HHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGC-CHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred hcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhHhHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999885432 455677889999999988899999999999
Q ss_pred cc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 222 SE--GKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 222 ~~--~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
+. ...+++++|..|+.+|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|||.|+|
T Consensus 159 ~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~D 235 (297)
T 3m0g_A 159 AETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKD 235 (297)
T ss_dssp HTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC----------------
T ss_pred hhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccch
Confidence 88 5568999999999999999999999999999998776 899999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 300 l~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+++||+|||+++|+++|++.++++.++|++.|+.|+.. .+.|..+++|+++|.+
T Consensus 236 l~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~-~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 236 AEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA-ASTLRACARYVIERDK 289 (297)
T ss_dssp -----CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG-GHHHHHHHHHHTC---
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999753 5899999999999963
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.7e-69 Score=516.49 Aligned_cols=287 Identities=35% Similarity=0.552 Sum_probs=251.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCch-hhhhHHHHHHHHHHHHhh
Q 037716 64 FEEYMIRKAEQVNKALDEAVVL-QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES-WAMPAACALEMIHTMSLI 141 (354)
Q Consensus 64 ~~~~l~~~~~~i~~~L~~~~~~-~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~-~~~~lA~avEliH~asLI 141 (354)
+..|-+.....|++.|.+.++. ..|+.+.++++|.+..||||+||.+++++++++|++.+ .+.++|++|||||+||||
T Consensus 10 ~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLI 89 (302)
T 3p8l_A 10 LTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLI 89 (302)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999875 35677999999999999999999999999999999888 899999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 037716 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIA 221 (354)
Q Consensus 142 hDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~ 221 (354)
|||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++. +.+++...+++..+++++|..+|+.||.+|+.
T Consensus 90 HDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~ 167 (302)
T 3p8l_A 90 HDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS--QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIE 167 (302)
T ss_dssp HHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999973 34566677889999998887899999999999
Q ss_pred ccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh
Q 037716 222 SEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301 (354)
Q Consensus 222 ~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~ 301 (354)
+....+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|++
T Consensus 168 ~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~ 247 (302)
T 3p8l_A 168 GEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEA 247 (302)
T ss_dssp TTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred ccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHh
Confidence 98767899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC----CCCHHHHHHHHHHHHhc
Q 037716 302 SGKATYPKLMGIENAKSFAGELLGQAIEELAYFE----ASKAAPLYFLANYIASR 352 (354)
Q Consensus 302 ~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~----~~~~~~L~~l~~~~~~R 352 (354)
+||+|||+++++++|++.++++.++|++.|+.|+ +..++.|..|++|+++|
T Consensus 248 egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 248 LNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp ---CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999994 56789999999999987
No 8
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=5e-69 Score=513.96 Aligned_cols=293 Identities=40% Similarity=0.594 Sum_probs=272.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMS 139 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~as 139 (354)
|+|.+++++.++.|++.|++.++.. .|..+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||+||
T Consensus 1 m~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~as 80 (299)
T 1rqj_A 1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Confidence 3688899999999999999999764 35679999999999999999999999999999998888999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNI-AGVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
|||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+++.||.+
T Consensus 81 LiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~ 160 (299)
T 1rqj_A 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_dssp HHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999842 235666777899999998887899999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccc
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVI-GGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~l-ag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g 297 (354)
|+.+..+.+++++|..|+++|||+||++||++|+++ +|++++..+.+++||.++|++|||+||++|++++++.+|||.|
T Consensus 161 dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g 240 (299)
T 1rqj_A 161 DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred HHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChh
Confidence 999887668999999999999999999999999999 9988889999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHhccC
Q 037716 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEA--SKAAPLYFLANYIASRQN 354 (354)
Q Consensus 298 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~~ 354 (354)
+|+++||+|||++++++++++.++++.++|++.|+.|+. ..++.|..|++|+++|++
T Consensus 241 ~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred hHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999953 367899999999999974
No 9
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.1e-69 Score=518.47 Aligned_cols=287 Identities=38% Similarity=0.570 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCC
Q 037716 67 YMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDD 144 (354)
Q Consensus 67 ~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDD 144 (354)
-+....+.|++.|++.++.. .|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||+|||||||
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDD 91 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDD 91 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 46777889999999999764 3667999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 037716 145 LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNI-AGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASE 223 (354)
Q Consensus 145 I~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~ 223 (354)
||+||+|++|||+||+|++||+++|||+||||++.||+.+++.. .+.+++...+++..+++++|..+|+.||.+|+.+.
T Consensus 92 Ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~ 171 (302)
T 3p8r_A 92 LPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAE 171 (302)
T ss_dssp CHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred cccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHcc
Confidence 99999999999999999999999999999999999999999853 11122345678888998887779999999999998
Q ss_pred CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhc
Q 037716 224 GKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302 (354)
Q Consensus 224 ~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~ 302 (354)
+..+++++|..|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+++
T Consensus 172 ~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~e 251 (302)
T 3p8r_A 172 NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQEL 251 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred CCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhc
Confidence 766899999999999999999999999999999 7888889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 303 GKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 303 gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..+++|+++|++
T Consensus 252 gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 252 NKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY-NTEHLEEFARYVVERKN 302 (302)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-CTHHHHHHHHHHHHCCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999976 37899999999999975
No 10
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=6.8e-69 Score=516.36 Aligned_cols=286 Identities=36% Similarity=0.591 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhC
Q 037716 66 EYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHD 143 (354)
Q Consensus 66 ~~l~~~~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhD 143 (354)
..++..++.|++.|.+.++.. .|+.+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||+||||||
T Consensus 35 ~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHD 114 (324)
T 3uca_A 35 MNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHD 114 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 346777889999999999863 367799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHH-HHHHHHHHHHhhhhhhhhhhhhhhhc
Q 037716 144 DLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRV-VRAIAEMCSAMGVEGLVAGEFVDIAS 222 (354)
Q Consensus 144 DI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~-~~~i~~l~~a~g~~~~~~GQ~lDl~~ 222 (354)
|||+||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+++.. .+++..+++++|..+|+.||.+|+.+
T Consensus 115 DIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~ 192 (324)
T 3uca_A 115 DLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYS--LEEGKSALKATKIIADAAGSDGMIGGQIVDIIN 192 (324)
T ss_dssp TSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred CchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHc
Confidence 999999999999999999999999999999999999999999852 122233 67888899888778999999999999
Q ss_pred cCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh
Q 037716 223 EGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301 (354)
Q Consensus 223 ~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~ 301 (354)
..+ .+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|++
T Consensus 193 ~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~ 272 (324)
T 3uca_A 193 EDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQE 272 (324)
T ss_dssp SSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------
T ss_pred CCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhh
Confidence 876 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 302 SGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 302 ~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+||+|||+++|+++|++.++++.++|++.|+.|+. .++.|..+++|+++|++
T Consensus 273 egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 273 SNKNNYITIFGLEECKKKCVNITEECIEILSSIKG-NTEPLKVLTMKLLERKF 324 (324)
T ss_dssp ----CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS-CCHHHHHHHHHHHHCCC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999975 46899999999999975
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.1e-69 Score=518.73 Aligned_cols=291 Identities=34% Similarity=0.507 Sum_probs=258.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhh--hhHHHHHHHHHHH
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQ-PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWA--MPAACALEMIHTM 138 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~-~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~--~~lA~avEliH~a 138 (354)
.+|.++++.....|++.|.+.++.. .|+.+.++++|.+..||||+||.+++++++++|++.+.+ .++|++|||||+|
T Consensus 6 ~~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~a 85 (309)
T 3pde_A 6 ARLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTY 85 (309)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHH
Confidence 3688999999999999999998764 467799999999999999999999999999999998888 9999999999999
Q ss_pred HhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037716 139 SLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFV 218 (354)
Q Consensus 139 sLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~l 218 (354)
||||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++. +.+++...+++..+++++|..+|+.||.+
T Consensus 86 SLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~~~~l~~a~g~~~m~~GQ~l 163 (309)
T 3pde_A 86 SLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT--DLPATMQAALVQALATAAGPSGMVAGQAK 163 (309)
T ss_dssp HHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhHhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999873 34566677889999999887899999999
Q ss_pred hhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccch
Q 037716 219 DIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298 (354)
Q Consensus 219 Dl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~ 298 (354)
|+.+.+..+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+
T Consensus 164 Dl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~ 243 (309)
T 3pde_A 164 DIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQK 243 (309)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccc
Confidence 99998777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHhccC
Q 037716 299 DLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEAS-KAAPLYFLANYIASRQN 354 (354)
Q Consensus 299 Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~R~~ 354 (354)
|+++||+|||++++++.+++.++++.++|.+.|+.++.. ..+.|..|++|+++|++
T Consensus 244 Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l~~~~~~r~~ 300 (309)
T 3pde_A 244 DADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDTERV 300 (309)
T ss_dssp -CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHGGGGGSCTTTT
T ss_pred hhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999995321 11229999999999964
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=3.5e-68 Score=508.25 Aligned_cols=288 Identities=36% Similarity=0.573 Sum_probs=252.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHh
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQ-PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSL 140 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~-~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 140 (354)
|+|.. ..+.|++.|.+.+... .|..+.++++|.+..||||+||++++++++++|++.+.+.++|++|||||+|||
T Consensus 4 m~~~~----~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 79 (301)
T 1rtr_A 4 LPMNK----LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSL 79 (301)
T ss_dssp CCHHH----HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 45544 5678999999988652 355699999999999999999999999999999988888999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 037716 141 IHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDI 220 (354)
Q Consensus 141 IhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl 220 (354)
||||||+||+|++|||+||+|++||+++|||+||+|++.||+.+++.. ..+++...+++..+++++|..+++.||.+|+
T Consensus 80 iHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl 158 (301)
T 1rtr_A 80 IHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD-RLTDEVKIKVLQRLSIASGHVGMVGGQMLDM 158 (301)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999852 3455667789999999988889999999999
Q ss_pred hccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhh
Q 037716 221 ASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300 (354)
Q Consensus 221 ~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl 300 (354)
.+....+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|+
T Consensus 159 ~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl 238 (301)
T 1rtr_A 159 QSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDL 238 (301)
T ss_dssp HTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHH
Confidence 98776789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhccC
Q 037716 301 ASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE-ASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 301 ~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~-~~~~~~L~~l~~~~~~R~~ 354 (354)
++||+|||++++++++++.++++.++|++.|+.|+ +..++.|..+++|+++|++
T Consensus 239 ~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 239 ENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999996 4457899999999999974
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=6e-68 Score=507.76 Aligned_cols=289 Identities=31% Similarity=0.467 Sum_probs=253.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhcC--CCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCc------hhhhhHHHH
Q 037716 60 PTFPFEEYMIRKAEQVNKALDEAVVL--QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE------SWAMPAACA 131 (354)
Q Consensus 60 ~~~~~~~~l~~~~~~i~~~L~~~~~~--~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~------~~~~~lA~a 131 (354)
..++|..+++.... |++.|++.++. ..|+.+.++++|.+..||||+||++++++++++|++. +.+.++|++
T Consensus 4 ~~~~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~a 82 (311)
T 3llw_A 4 SSPNLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALS 82 (311)
T ss_dssp CCHHHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHH
Confidence 36789999999888 99999999864 2456799999999999999999999999999999988 889999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhh
Q 037716 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEG 211 (354)
Q Consensus 132 vEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~ 211 (354)
|||||+|||||||||+||+|++|||+||+|++||+.+|||+||+|++.||+.+++ ..++++...+++..++++.|..+
T Consensus 83 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~--~~~~~~~~~~~i~~la~a~g~~~ 160 (311)
T 3llw_A 83 IECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN--ALLESHIIVELIKILSANGGIKG 160 (311)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH--SCSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 23455667788999999877689
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCChh
Q 037716 212 LVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEV-ERVRNYARCIGLLFQVVDDILDVTKSSE 290 (354)
Q Consensus 212 ~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~-~~l~~~g~~lG~afQI~DD~lD~~~~~~ 290 (354)
|+.||.+|+.+....+++++|..|+.+|||+||++||++|++++|++++.+ +.+++||.++|+||||+||++|+++|++
T Consensus 161 m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 240 (311)
T 3llw_A 161 MILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEE 240 (311)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 999999999998766899999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred hhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCC--CC-HHHHHHHHHHHHhcc
Q 037716 291 ELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEA--SK-AAPLYFLANYIASRQ 353 (354)
Q Consensus 291 ~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~--~~-~~~L~~l~~~~~~R~ 353 (354)
.+||+.|+ ++||+|||++++++.+++.++++.++|.+.|+.|+. .. .+.|..+++|+++|+
T Consensus 241 ~~GK~~g~--~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 241 ESGKTTHL--DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp ------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred HHCccccc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 99999887 999999999999999999999999999999999542 23 578999999999996
No 14
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=3.3e-65 Score=495.44 Aligned_cols=284 Identities=32% Similarity=0.457 Sum_probs=233.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHH
Q 037716 58 PLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHT 137 (354)
Q Consensus 58 ~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~ 137 (354)
+.++.++.++++++++.|+..|++.+++..| .+.++++|++..||||+||++++++++++|++.+.+.++|++|||||+
T Consensus 21 ~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~-~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~ 99 (345)
T 3oyr_A 21 SGSVDRLVRLAEADMAGVNRLITDRMQSDVA-IIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHT 99 (345)
T ss_dssp CCCSHHHHHHTHHHHHHHHHHHHHHTCCSST-HHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999988655 589999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 037716 138 MSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEF 217 (354)
Q Consensus 138 asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~ 217 (354)
|||||||| ||+|++|||+||+|++||+++|||+||||+++||+.+++... .+++..+++++ .+++.||.
T Consensus 100 asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-------~~~~~~~~~~~--~~~~~GQ~ 168 (345)
T 3oyr_A 100 ATLLHDDV--VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNS-------MKALEILARAS--RVIAEGEV 168 (345)
T ss_dssp HHHHTTTT--C---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTC-------HHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHCcc--cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCc-------HHHHHHHHHHH--HHHHHHHH
Confidence 99999997 999999999999999999999999999999999999997531 24556667777 78999999
Q ss_pred hhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCcc
Q 037716 218 VDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTA 296 (354)
Q Consensus 218 lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~ 296 (354)
+|+.+..+ .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.
T Consensus 169 ~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~ 248 (345)
T 3oyr_A 169 LQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNA 248 (345)
T ss_dssp HHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCc
Confidence 99998765 38999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCcHHHHHhH--------------------------------------HHHHHHHHHHHHHHHHHhhccCCC-
Q 037716 297 GKDLASGKATYPKLMGI--------------------------------------ENAKSFAGELLGQAIEELAYFEAS- 337 (354)
Q Consensus 297 g~Dl~~gk~T~p~l~~l--------------------------------------e~a~~~~~~~~~~A~~~L~~l~~~- 337 (354)
|+|+++||+|||+++++ +++++.++++.++|++.|+.||+.
T Consensus 249 g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~ 328 (345)
T 3oyr_A 249 GDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAND 328 (345)
T ss_dssp --------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSH
T ss_pred cchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999864 678899999999999999999654
Q ss_pred CHHHHHHHHHHHHhcc
Q 037716 338 KAAPLYFLANYIASRQ 353 (354)
Q Consensus 338 ~~~~L~~l~~~~~~R~ 353 (354)
.++.|..+++|+++|.
T Consensus 329 ~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 329 WREALEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4689999999999996
No 15
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=8.3e-65 Score=483.38 Aligned_cols=280 Identities=66% Similarity=1.036 Sum_probs=254.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHh
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSL 140 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 140 (354)
--+|..+++..++.|++.|++.++...|..+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||+|||
T Consensus 10 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 89 (293)
T 2j1p_A 10 HTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSL 89 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999876677799999999999999999999999999999988888999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccC-CChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037716 141 IHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219 (354)
Q Consensus 141 IhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~-~~~~~~~~~i~~l~~a~g~~~~~~GQ~lD 219 (354)
|||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.... .++..+.+++.++++++|..+++.||.+|
T Consensus 90 iHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~D 169 (293)
T 2j1p_A 90 IHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVD 169 (293)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHT
T ss_pred HHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986422 45667888899999888777899999999
Q ss_pred hhccCC---CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCcc
Q 037716 220 IASEGK---DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTA 296 (354)
Q Consensus 220 l~~~~~---~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~ 296 (354)
+.+... .+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++
T Consensus 170 l~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~------- 242 (293)
T 2j1p_A 170 ISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS------- 242 (293)
T ss_dssp TC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-------
Confidence 998764 3678899999999999999999999999999999999999999999999999999999999864
Q ss_pred chhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 297 GKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 297 g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
|.|||+++|+++|++.++++.++|++.|+.|++..++.|..+++|+++|.+
T Consensus 243 -------K~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 243 -------KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293 (293)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHHHHHCCC
T ss_pred -------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999976567899999999999974
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=9.7e-65 Score=481.43 Aligned_cols=276 Identities=33% Similarity=0.450 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHhcCC--CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCC-chhhhhHHHHHHHHHHHHhhhCCCCCC
Q 037716 72 AEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD-ESWAMPAACALEMIHTMSLIHDDLPFL 148 (354)
Q Consensus 72 ~~~i~~~L~~~~~~~--~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~-~~~~~~lA~avEliH~asLIhDDI~vi 148 (354)
.+.|++.|++.++.. .|+.+.++++|.+..||||+||++++++++++|++ .+.+.++|++|||||+|||||||||+|
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~m 85 (291)
T 3npk_A 6 KELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAM 85 (291)
T ss_dssp HHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 467788888877532 34569999999999999999999999999999887 478999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCC
Q 037716 149 DNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVS 228 (354)
Q Consensus 149 D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~~~ 228 (354)
|+|++|||+||+|++||+++|||+||+|++.||+.+++. ..+++...+++..++++.|..+++.||.+|+.+....++
T Consensus 86 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~ 163 (291)
T 3npk_A 86 DNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA--HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLS 163 (291)
T ss_dssp TCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS--SSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCC
T ss_pred cCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999874 345566778888899986669999999999998876789
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHH
Q 037716 229 LKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP 308 (354)
Q Consensus 229 ~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p 308 (354)
+++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.+.| +||+|||
T Consensus 164 ~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p 241 (291)
T 3npk_A 164 LNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFV 241 (291)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 9999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 037716 309 KLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIAS 351 (354)
Q Consensus 309 ~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~ 351 (354)
++++++.+++.++++.++|.+.|+.|+....+.|+.+++|-.+
T Consensus 242 ~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 242 NLLGLEQAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQYLE 284 (291)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999975337899999988654
No 17
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-65 Score=482.30 Aligned_cols=269 Identities=30% Similarity=0.439 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCC
Q 037716 70 RKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLD 149 (354)
Q Consensus 70 ~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD 149 (354)
...++|++.|++.++...|+.+.++++|.+..||||+||.+++++++++|++.+.+.++|++|||||+|||||||||+||
T Consensus 13 ~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D 92 (284)
T 2ftz_A 13 MKXEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPID 92 (284)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred cchHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC
Confidence 34678899999988544566799999999999999999999999999999988889999999999999999999999999
Q ss_pred CCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC--CC
Q 037716 150 NDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK--DV 227 (354)
Q Consensus 150 ~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~--~~ 227 (354)
+|++|||+||+|++||+++|||+||||++.||+.+++. ++. +++..+++++ .+++.||.+|+.+... .+
T Consensus 93 ~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~----~~~---~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~ 163 (284)
T 2ftz_A 93 NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXI----GNS---XIFEEFSETA--YXLLLGEAMDVEFERRXMEV 163 (284)
T ss_dssp CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT----CCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhC----ChH---HHHHHHHHHH--HHHhhhhHHHHHhccCcCCC
Confidence 99999999999999999999999999999999999985 222 5566667777 8999999999998765 58
Q ss_pred CHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcH
Q 037716 228 SLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY 307 (354)
Q Consensus 228 ~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~ 307 (354)
++++|..|+++|||+||++||++|++++|++++ .+++||.++|++|||+||++|++++++.+|||.|+|++ |+||
T Consensus 164 ~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~ 238 (284)
T 2ftz_A 164 SQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTL 238 (284)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccch
Confidence 999999999999999999999999999998766 89999999999999999999999999999999999999 9999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHhc
Q 037716 308 PKLMGIENAKSFAGELLGQAIEELAYFEASKAAP-LYFLANYIASR 352 (354)
Q Consensus 308 p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~-L~~l~~~~~~R 352 (354)
|++++++++++.++++.++|++.|+.|+...++. |..+++|+++|
T Consensus 239 p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 239 VXXVGIQXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999996534677 99999999987
No 18
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.4e-64 Score=490.77 Aligned_cols=283 Identities=27% Similarity=0.420 Sum_probs=244.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHh
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSL 140 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 140 (354)
+.++..+++++++.|++.|++.+.+..++.+.++++|++..||||+||++++++++++|++.+.+.++|++|||||+|||
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asL 90 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATL 90 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999876355699999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 037716 141 IHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDI 220 (354)
Q Consensus 141 IhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl 220 (354)
||||| ||+|++|||+||+|.+||+++|||+||||+++||+.+++... . +++..+++++ .+++.||.+|+
T Consensus 91 iHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~GQ~~dl 159 (341)
T 3mzv_A 91 LHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGN----M---RVMEILANAS--AVIAEGEVLQL 159 (341)
T ss_dssp HHHHC--------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCC----H---HHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCc----H---HHHHHHHHHH--HHHHHHHHHHH
Confidence 99997 999999999999999999999999999999999999987521 2 4555566666 78999999999
Q ss_pred hccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 221 ASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 221 ~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
.+... .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|
T Consensus 160 ~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~D 239 (341)
T 3mzv_A 160 TAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDD 239 (341)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHH
T ss_pred HhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcc
Confidence 98765 38999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHh--------------------------------------HHHHHHHHHHHHHHHHHHhhccCC-CCHH
Q 037716 300 LASGKATYPKLMG--------------------------------------IENAKSFAGELLGQAIEELAYFEA-SKAA 340 (354)
Q Consensus 300 l~~gk~T~p~l~~--------------------------------------le~a~~~~~~~~~~A~~~L~~l~~-~~~~ 340 (354)
+++||+|||++++ ++++++.++++.++|++.|+.||. +.++
T Consensus 240 l~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 319 (341)
T 3mzv_A 240 FRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQ 319 (341)
T ss_dssp HHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred cccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999984 577889999999999999999965 4468
Q ss_pred HHHHHHHHHHhccC
Q 037716 341 PLYFLANYIASRQN 354 (354)
Q Consensus 341 ~L~~l~~~~~~R~~ 354 (354)
.|..+++|+++|.+
T Consensus 320 ~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 320 MLDDLADYVVERVR 333 (341)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999964
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=9e-64 Score=486.27 Aligned_cols=285 Identities=35% Similarity=0.527 Sum_probs=261.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhC
Q 037716 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHD 143 (354)
Q Consensus 64 ~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhD 143 (354)
+...++..+..|++.|++.++...++.+.++++|++..||||+||.+++++++++|++.+.+.++|++|||||+||||||
T Consensus 7 ~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHD 86 (342)
T 1wy0_A 7 LFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHD 86 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 45567788889999999999775356799999999999999999999999999999988889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 037716 144 DLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASE 223 (354)
Q Consensus 144 DI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~ 223 (354)
|| ||+|++|||+||+|.+||+++|||+||||++.||+.+++. ..+++...+++..+++++ .+++.||.+|+.+.
T Consensus 87 Di--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~ 160 (342)
T 1wy0_A 87 DI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARA--EIPPEKKARVLEVIVKAS--NELCEGQARDLEFE 160 (342)
T ss_dssp HH--HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred Cc--ccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHc--ccCcccHHHHHHHHHHHH--HHHHHHHHHHHHcc
Confidence 97 9999999999999999999999999999999999999985 244555667888888888 89999999999988
Q ss_pred CC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhc
Q 037716 224 GK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302 (354)
Q Consensus 224 ~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~ 302 (354)
.. ..++++|..|+.+|||+||.+||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+++
T Consensus 161 ~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~e 240 (342)
T 1wy0_A 161 KKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRK 240 (342)
T ss_dssp TCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHH
T ss_pred cCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhC
Confidence 65 48999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhHH-------------------------------------------------HHHHHHHHHHHHHHHHhhc
Q 037716 303 GKATYPKLMGIE-------------------------------------------------NAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 303 gk~T~p~l~~le-------------------------------------------------~a~~~~~~~~~~A~~~L~~ 333 (354)
||+|||++++++ ++++.++++.++|++.|+.
T Consensus 241 gK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~ 320 (342)
T 1wy0_A 241 GKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRI 320 (342)
T ss_dssp TCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999875 5678899999999999999
Q ss_pred cCCC-CHHHHHHHHHHHHhccC
Q 037716 334 FEAS-KAAPLYFLANYIASRQN 354 (354)
Q Consensus 334 l~~~-~~~~L~~l~~~~~~R~~ 354 (354)
++.. .++.|..+++|+++|++
T Consensus 321 l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 321 LPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp SCCCHHHHHHHHHHHHTTTCC-
T ss_pred CCCcHHHHHHHHHHHHHHhccC
Confidence 9654 46899999999999974
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=1.1e-63 Score=486.63 Aligned_cols=281 Identities=26% Similarity=0.356 Sum_probs=241.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhC-CCchhhhhHHHHHHHHHHHH
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG-GDESWAMPAACALEMIHTMS 139 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g-~~~~~~~~lA~avEliH~as 139 (354)
..+|..++++.++.|++.|++.++.. ++.+.++++|++..||||+||++++++++++| ++.+.+.++|++|||||+||
T Consensus 33 ~~~~~~~l~~~l~~ve~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~as 111 (360)
T 3lmd_A 33 DPELTARINDAMVQVEELLHTELSSG-EDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLAT 111 (360)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999875 45699999999999999999999999999998 77888999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lD 219 (354)
|||||| ||+|++|||+||+|.+||+++|||+||||+++||+.++++. + +++..+++++ .+++.||.+|
T Consensus 112 LIHDDI--mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~~~~~~--~~~~~GQ~ld 179 (360)
T 3lmd_A 112 LYHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG----T----DTVAHFAETF--GELVTGQMRE 179 (360)
T ss_dssp HHHHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHHHHH
T ss_pred HHhCCC--cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC----H----HHHHHHHHHH--HHHHHHHHHH
Confidence 999997 99999999999999999999999999999999999999852 2 4556666666 7899999999
Q ss_pred hhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 220 IASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 220 l~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
+.+....+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.|+|
T Consensus 180 l~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~D 259 (360)
T 3lmd_A 180 TVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTD 259 (360)
T ss_dssp HHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH
T ss_pred HhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhH
Confidence 99987668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHh-------------------------------------HHHHHHHHHHHHHHHHHHhhccCCC-CHHH
Q 037716 300 LASGKATYPKLMG-------------------------------------IENAKSFAGELLGQAIEELAYFEAS-KAAP 341 (354)
Q Consensus 300 l~~gk~T~p~l~~-------------------------------------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~ 341 (354)
+++||+|||++++ ++++++.++++.++|++.|+.||.. .++.
T Consensus 260 l~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 339 (360)
T 3lmd_A 260 LREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEA 339 (360)
T ss_dssp HHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHH
T ss_pred HhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999984 6788999999999999999999653 4689
Q ss_pred HHHHHHHHHhccC
Q 037716 342 LYFLANYIASRQN 354 (354)
Q Consensus 342 L~~l~~~~~~R~~ 354 (354)
|..|++|+++|..
T Consensus 340 L~~La~~~~~R~~ 352 (360)
T 3lmd_A 340 LRNLATFTVKRVG 352 (360)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999963
No 21
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.1e-63 Score=485.48 Aligned_cols=281 Identities=28% Similarity=0.393 Sum_probs=250.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhh
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 141 (354)
..|..+++...+.|++.|++.++...|+.+.++++|++..||||+||++++++++++|++.+.+.++|++|||||+||||
T Consensus 4 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 83 (358)
T 4dhd_A 4 DVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLI 83 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999998764677999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 037716 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIA 221 (354)
Q Consensus 142 hDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~ 221 (354)
|||| ||+|++|||+||+|++||+++|||+||||++.|++.+.... ...+++..+++++ .+++.||.+|+.
T Consensus 84 HDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~~--~~~~~GQ~ldl~ 153 (358)
T 4dhd_A 84 YDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTP------KPTLFAKEVAEVI--KAIDEGERLDIL 153 (358)
T ss_dssp HHHH--HTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSS------SHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HCcc--ccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9997 99999999999999999999999999999999999996421 2335666677777 789999999999
Q ss_pred cc-----------CC--CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 037716 222 SE-----------GK--DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKS 288 (354)
Q Consensus 222 ~~-----------~~--~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~ 288 (354)
+. .+ .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++
T Consensus 154 ~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd 233 (358)
T 4dhd_A 154 FEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGD 233 (358)
T ss_dssp TBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 87 32 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCccchhhhcCCC-cHHHHHhHHH--------------------------------------HHHHHHHHHHHHHH
Q 037716 289 SEELGKTAGKDLASGKA-TYPKLMGIEN--------------------------------------AKSFAGELLGQAIE 329 (354)
Q Consensus 289 ~~~~GK~~g~Dl~~gk~-T~p~l~~le~--------------------------------------a~~~~~~~~~~A~~ 329 (354)
++.+|||.|+|+++||+ |||++++++. +++.++++.++|++
T Consensus 234 ~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~ 313 (358)
T 4dhd_A 234 PKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAER 313 (358)
T ss_dssp ------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999986653 78889999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHhccC
Q 037716 330 ELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 330 ~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
.|+.|++.. .|..|++|+++|++
T Consensus 314 ~L~~lp~~~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 314 HLAKIPNNG--TLKELLDFIVAREY 336 (358)
T ss_dssp HHTTSSSCH--HHHHHHHHHTTTTT
T ss_pred HHHcCCCCH--HHHHHHHHHHhccc
Confidence 999997433 99999999999974
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-63 Score=481.10 Aligned_cols=279 Identities=27% Similarity=0.369 Sum_probs=230.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhh
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIH 142 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIh 142 (354)
.+...++++++.|+..|++.++.. ++.+.++++|++..||||+||++++++++++|++.+.+.++|++|||||+|||||
T Consensus 8 ~~~~~i~~~l~~v~~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiH 86 (334)
T 3rmg_A 8 LIKTPIEAELEDFKALFDTPLSDS-NALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVH 86 (334)
T ss_dssp HHHGGGHHHHHHHHHHTC----CC-CHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999875 4569999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 037716 143 DDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS 222 (354)
Q Consensus 143 DDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~ 222 (354)
||| ||+|++|||+||+|.+||+++|||+||||++.|++.+++.. .. +++..+++++ .+++.||.+|+.+
T Consensus 87 DDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~GQ~ldl~~ 155 (334)
T 3rmg_A 87 DDV--VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN----NY---EIIRLVSSLG--QKLAEGELLQLSN 155 (334)
T ss_dssp HHH--HC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CH---HHHHHHHHHH--HHHHHHHHHHHHC
T ss_pred cCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC----cH---HHHHHHHHHH--HHHHHHHHHHHHh
Confidence 997 99999999999999999999999999999999999998742 12 4445556666 7899999999998
Q ss_pred cCCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh
Q 037716 223 EGKD-VSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301 (354)
Q Consensus 223 ~~~~-~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~ 301 (354)
.... +++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++ +++.+|||.|+|++
T Consensus 156 ~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~ 234 (334)
T 3rmg_A 156 VSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDML 234 (334)
T ss_dssp CCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHH
T ss_pred CCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhh
Confidence 7653 899999999999999999999999999999999999999999999999999999999999 57889999999999
Q ss_pred cCCCcHHHHH--------------------------------------hHHHHHHHHHHHHHHHHHHhhccCCC-CHHHH
Q 037716 302 SGKATYPKLM--------------------------------------GIENAKSFAGELLGQAIEELAYFEAS-KAAPL 342 (354)
Q Consensus 302 ~gk~T~p~l~--------------------------------------~le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L 342 (354)
+||+|||+++ +++++++.++++.++|++.|+.||++ .++.|
T Consensus 235 egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L 314 (334)
T 3rmg_A 235 EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLAL 314 (334)
T ss_dssp TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999997 46677888999999999999999653 46899
Q ss_pred HHHHHHHHhccC
Q 037716 343 YFLANYIASRQN 354 (354)
Q Consensus 343 ~~l~~~~~~R~~ 354 (354)
..|++|+++|.+
T Consensus 315 ~~l~~~~~~R~~ 326 (334)
T 3rmg_A 315 RTYLDYVVAREK 326 (334)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHhccc
Confidence 999999999974
No 23
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.5e-62 Score=478.16 Aligned_cols=282 Identities=31% Similarity=0.442 Sum_probs=255.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhH-----------hCCCccchHHHHHHHHHHhCCCchhhhhHHHH
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSL-----------LAGGKRVRPLLCIASCELVGGDESWAMPAACA 131 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~-----------~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~a 131 (354)
+..++++.....|+..|++.++..+| .+.+++.|.+ ..||||+||++++++++++|++.+.++++|++
T Consensus 4 ~~~~~l~~~~~~v~~~l~~~v~~~~~-~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~a 82 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCT-THHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46788999999999999999998666 5899999988 68999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhh
Q 037716 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEG 211 (354)
Q Consensus 132 vEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~ 211 (354)
|||||+|||||||| ||+|++|||+||+|++||+++|||+||||++.|++.++++.. ....+++..+++++ .+
T Consensus 83 vEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~----~~~~~~~~~~~~~~--~~ 154 (352)
T 3nf2_A 83 VELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGT----VEAGRATRRLTKAS--RS 154 (352)
T ss_dssp HHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHH--HH
Confidence 99999999999997 999999999999999999999999999999999999998532 22346667777777 89
Q ss_pred hhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChh
Q 037716 212 LVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSE 290 (354)
Q Consensus 212 ~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~ 290 (354)
++.||.+|+.+..+ .+++++|..|+.+|||+||++||++|++++|++++.++.++.||.++|+||||+||++|++++++
T Consensus 155 l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~ 234 (352)
T 3nf2_A 155 LIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPD 234 (352)
T ss_dssp HHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 99999999998765 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCccchhhhcCCCcHHHHHhHH--------------------------------------------HHHHHHHHHHHH
Q 037716 291 ELGKTAGKDLASGKATYPKLMGIE--------------------------------------------NAKSFAGELLGQ 326 (354)
Q Consensus 291 ~~GK~~g~Dl~~gk~T~p~l~~le--------------------------------------------~a~~~~~~~~~~ 326 (354)
.+|||.|+||++||+|||++++++ ++++.++++.++
T Consensus 235 ~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~ 314 (352)
T 3nf2_A 235 ATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTI 314 (352)
T ss_dssp HHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999999999987443 345567889999
Q ss_pred HHHHhhccCC--CCHHHHHHHHHHHHhcc
Q 037716 327 AIEELAYFEA--SKAAPLYFLANYIASRQ 353 (354)
Q Consensus 327 A~~~L~~l~~--~~~~~L~~l~~~~~~R~ 353 (354)
|++.|+.++. ..++.|..|++|+++|.
T Consensus 315 A~~~L~~lp~~~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 315 AIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 9999999964 35789999999999986
No 24
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.4e-62 Score=474.71 Aligned_cols=281 Identities=29% Similarity=0.407 Sum_probs=254.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhh
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 141 (354)
+++...++++++.|++.|++.++... +.+.++++|++..||||+||.+++++++++|++.+.+.++|+++||||+||||
T Consensus 4 l~~~~~~~~~~~~v~~~l~~~~~~~~-~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLi 82 (325)
T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQSDS-ETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLV 82 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999997754 46999999999999999999999999999998888899999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 037716 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIA 221 (354)
Q Consensus 142 hDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~ 221 (354)
|||| ||+|++|||+||+|.+||+++|||+||||++.|++.+++.. .. +++..+++++ .+++.||.+|+.
T Consensus 83 HDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~~--~~~~~GQ~~dl~ 151 (325)
T 3aqb_B 83 HDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATIN----NS---KFHQIFSKTI--LEVCFGEFDQMA 151 (325)
T ss_dssp HHHH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCC----CH---HHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hCcc--ccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCC----hH---HHHHHHHHHH--HHHHHHHHHHHH
Confidence 9997 99999999999999999999999999999999999998742 12 4555666666 789999999999
Q ss_pred ccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhh
Q 037716 222 SEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 300 (354)
Q Consensus 222 ~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl 300 (354)
+..+ .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+
T Consensus 152 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl 231 (325)
T 3aqb_B 152 DRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDI 231 (325)
T ss_dssp TTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHH
T ss_pred cccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHh
Confidence 8765 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHhHHHH---------------------------------------HHHHHHHHHHHHHHhhccCCC-CHH
Q 037716 301 ASGKATYPKLMGIENA---------------------------------------KSFAGELLGQAIEELAYFEAS-KAA 340 (354)
Q Consensus 301 ~~gk~T~p~l~~le~a---------------------------------------~~~~~~~~~~A~~~L~~l~~~-~~~ 340 (354)
++||+|||++++++.+ ++.++++.++|++.|+.++.. .++
T Consensus 232 ~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~ 311 (325)
T 3aqb_B 232 RNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKD 311 (325)
T ss_dssp HTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred hCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999876543 466778899999999999654 467
Q ss_pred HHHHHHHHHHhccC
Q 037716 341 PLYFLANYIASRQN 354 (354)
Q Consensus 341 ~L~~l~~~~~~R~~ 354 (354)
.|..+++++++|++
T Consensus 312 ~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 312 YLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCcC
Confidence 99999999999974
No 25
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=4.9e-63 Score=478.99 Aligned_cols=278 Identities=25% Similarity=0.360 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCC--CchhhhhHHHHHHHHHHHHhhh
Q 037716 65 EEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG--DESWAMPAACALEMIHTMSLIH 142 (354)
Q Consensus 65 ~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~--~~~~~~~lA~avEliH~asLIh 142 (354)
.+.++++++.|++.|++.+....| .+.++++|++..||||+||++++++++ +|+ +.+.+.++|++|||||+|||||
T Consensus 18 ~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiH 95 (334)
T 3pko_A 18 FPQVEPQLTALQDYLLRTVQLDNQ-PIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIH 95 (334)
T ss_dssp CTTTHHHHHHHHHHHHHHCCCSCH-HHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344677889999999999987665 699999999999999999999999999 675 6788899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 037716 143 DDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS 222 (354)
Q Consensus 143 DDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~ 222 (354)
||| ||+|++|||+||+|++||+++|||+||||++.||+.+++... ++ +++..+++++ .+++.||.+|+.+
T Consensus 96 DDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~--~~----~~~~~~~~~~--~~~~~Gq~~dl~~ 165 (334)
T 3pko_A 96 DDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTT--DR----SLIQNHIDAM--HRILQGELHQMDL 165 (334)
T ss_dssp HHH--HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--CH----HHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred Ccc--CCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHH--HHHHHHHHHHHHh
Confidence 997 999999999999999999999999999999999999998642 22 3445566666 7899999999988
Q ss_pred cCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh
Q 037716 223 EGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301 (354)
Q Consensus 223 ~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~ 301 (354)
... .+++++|..++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|++
T Consensus 166 ~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~ 245 (334)
T 3pko_A 166 NYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLR 245 (334)
T ss_dssp TTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccc
Confidence 754 4899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHhH-----------------------------------HHHHHHHHHHHHHHHHHhhccCCC-CHHHHHHH
Q 037716 302 SGKATYPKLMGI-----------------------------------ENAKSFAGELLGQAIEELAYFEAS-KAAPLYFL 345 (354)
Q Consensus 302 ~gk~T~p~l~~l-----------------------------------e~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l 345 (354)
+||+|||+++++ +++++.++++.++|++.|+.|+.. .++.|..|
T Consensus 246 egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l 325 (334)
T 3pko_A 246 SGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQL 325 (334)
T ss_dssp TTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHH
T ss_pred cCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999866 478899999999999999999654 46899999
Q ss_pred HHHHHhccC
Q 037716 346 ANYIASRQN 354 (354)
Q Consensus 346 ~~~~~~R~~ 354 (354)
++++++|++
T Consensus 326 ~~~~~~R~~ 334 (334)
T 3pko_A 326 TRLLLRRDH 334 (334)
T ss_dssp HHHHTTCC-
T ss_pred HHHHHhccC
Confidence 999999974
No 26
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2.1e-62 Score=466.47 Aligned_cols=263 Identities=29% Similarity=0.445 Sum_probs=230.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCC
Q 037716 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDE 152 (354)
Q Consensus 73 ~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~ 152 (354)
..|++.|++.++...++.+.++++|++..||||+||.+++++++++|++.+.+.++|++|||||+|||||||| ||+|+
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D~s~ 89 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQGL 89 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HHHHT
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcC--cCCCC
Confidence 7899999999876555679999999999999999999999999999999999999999999999999999997 99999
Q ss_pred CCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHH
Q 037716 153 RRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKEL 232 (354)
Q Consensus 153 ~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~ 232 (354)
+|||+||+|++||+++|||+||||+++||+.+++.. . +++..+++++ .+++.||.+|+.+....+++++|
T Consensus 90 ~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~y 159 (295)
T 3ipi_A 90 VRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-----E---KVIQDFGKAG--MDMAEGEVLDLKLEDESFGENDY 159 (295)
T ss_dssp SCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-----H---HHHHHHHHHH--HHHHHHHHHHHC-------CHHH
T ss_pred CCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-----H---HHHHHHHHHH--HHHHccchHHHHccCCCCCHHHH
Confidence 999999999999999999999999999999998742 1 4455566666 78999999999988766888999
Q ss_pred HHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHh
Q 037716 233 EYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMG 312 (354)
Q Consensus 233 ~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~ 312 (354)
..++.+|||+||++||++|++++|++++..+.+++||+++|+||||+||++|++++++ || |+.+||+|||++++
T Consensus 160 ~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 160 FKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998753 54 77899999999998
Q ss_pred --------HHHHHHHHHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHhcc
Q 037716 313 --------IENAKSFAGELLGQAIEELAYFEAS-KAAPLYFLANYIASRQ 353 (354)
Q Consensus 313 --------le~a~~~~~~~~~~A~~~L~~l~~~-~~~~L~~l~~~~~~R~ 353 (354)
+++|++.++++.++|++.|+.||+. .++.|..+++|++.|.
T Consensus 234 l~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 234 KSTSKEEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999653 4689999999999874
No 27
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=2.3e-62 Score=477.36 Aligned_cols=277 Identities=30% Similarity=0.391 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCC--CccchHHHHHHHHHHhCCCc-----------------hhhh
Q 037716 66 EYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAG--GKRVRPLLCIASCELVGGDE-----------------SWAM 126 (354)
Q Consensus 66 ~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~-----------------~~~~ 126 (354)
..++++++.|++.|++.+....| .+.++++|.+..| |||+||++++++++++|++. +.+.
T Consensus 12 ~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (348)
T 3apz_A 12 SLVADELSLLSNKLREMVLAEVP-KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQR 90 (348)
T ss_dssp TTTHHHHHHHHHGGGGCCCCCCC-------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHH
Confidence 34566788899999998877666 4999999999877 99999999999999998642 2468
Q ss_pred hHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 037716 127 PAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSA 206 (354)
Q Consensus 127 ~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a 206 (354)
++|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.++++. .. +++..++++
T Consensus 91 ~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~~---~~~~~~~~~ 161 (348)
T 3apz_A 91 GIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK----NT---EVVALLATA 161 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHHHHHHHHTT----CH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc--cCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHH
Confidence 8999999999999999997 99999999999999999999999999999999999998852 12 445556666
Q ss_pred hhhhhhhhhhhhhhhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037716 207 MGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDV 285 (354)
Q Consensus 207 ~g~~~~~~GQ~lDl~~~~~-~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~ 285 (354)
+ .+++.||.+|+.+... .+++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+
T Consensus 162 ~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~ 239 (348)
T 3apz_A 162 V--EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDF 239 (348)
T ss_dssp H--HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6 7899999999987643 378999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhCCccchhhhcCCCcHHHHH---------------------------------hHHHHHHHHHHHHHHHHHHhh
Q 037716 286 TKSSEELGKTAGKDLASGKATYPKLM---------------------------------GIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 286 ~~~~~~~GK~~g~Dl~~gk~T~p~l~---------------------------------~le~a~~~~~~~~~~A~~~L~ 332 (354)
+++++.+|||.|+|+++||+|||+++ +++++++.++++.++|++.|+
T Consensus 240 ~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~ 319 (348)
T 3apz_A 240 TGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIG 319 (348)
T ss_dssp HTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 678999999999999999999
Q ss_pred ccCCC-------CHHHHHHHHHHHHhccC
Q 037716 333 YFEAS-------KAAPLYFLANYIASRQN 354 (354)
Q Consensus 333 ~l~~~-------~~~~L~~l~~~~~~R~~ 354 (354)
.|+.. .++.|..|++++++|++
T Consensus 320 ~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 320 SLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp TSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 99754 37899999999999975
No 28
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-61 Score=464.59 Aligned_cols=275 Identities=25% Similarity=0.299 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCC
Q 037716 69 IRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFL 148 (354)
Q Consensus 69 ~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~vi 148 (354)
......|++.|.+.+.. .++.+.++++|++..||||+||.+++++++++|++.+.+.++|++|||||+|||||||| |
T Consensus 6 ~~~~~~v~~~l~~~~~~-~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi--~ 82 (330)
T 1wmw_A 6 EAIRQALQERLLARLDH-PDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--E 82 (330)
T ss_dssp HHHHHHHHHHHHHHTCC-SSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--c
Confidence 45567888899988866 45569999999999999999999999999999998888999999999999999999997 9
Q ss_pred CCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhc-cCC-
Q 037716 149 DNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS-EGK- 225 (354)
Q Consensus 149 D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~-~~~- 225 (354)
|+|++|||+||+|.+||+++|||+||||++.|++.+++... +.++. +++..+++++ .+++.||.+|+.+ ..+
T Consensus 83 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~ 157 (330)
T 1wmw_A 83 DGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPP---EVLLEFHEVV--RRTAYGQHLDLLWTLGGT 157 (330)
T ss_dssp HTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSSS
T ss_pred cCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHH---HHHHHHHHHH--HHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999998642 23333 4555566666 8899999999998 655
Q ss_pred -CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcC
Q 037716 226 -DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASG 303 (354)
Q Consensus 226 -~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~g 303 (354)
.+++++|..|+.+|||+| |++||++|++++|++++.. +++||.++|++|||+||++|++++++ +|||.|+|+++|
T Consensus 158 ~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~eg 234 (330)
T 1wmw_A 158 FDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEG 234 (330)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHT
T ss_pred CCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCC
Confidence 489999999999999999 9999999999999887766 99999999999999999999999999 999999999999
Q ss_pred CCcHHHHHhH----------------------------------------HHHHHHHHHHHHHHHHHhh----ccCC-CC
Q 037716 304 KATYPKLMGI----------------------------------------ENAKSFAGELLGQAIEELA----YFEA-SK 338 (354)
Q Consensus 304 k~T~p~l~~l----------------------------------------e~a~~~~~~~~~~A~~~L~----~l~~-~~ 338 (354)
|+|||+++++ +++++.+++|.++|++.|+ .|+. ..
T Consensus 235 K~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~ 314 (330)
T 1wmw_A 235 KRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEA 314 (330)
T ss_dssp CCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHH
T ss_pred CCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH
Confidence 9999999855 3445678889999999999 8864 34
Q ss_pred HHHHHHHHHHHHhccC
Q 037716 339 AAPLYFLANYIASRQN 354 (354)
Q Consensus 339 ~~~L~~l~~~~~~R~~ 354 (354)
++.|..+++++++|.+
T Consensus 315 ~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 315 LDHLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 6889999999999974
No 29
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.5e-59 Score=461.12 Aligned_cols=258 Identities=30% Similarity=0.439 Sum_probs=217.5
Q ss_pred hHHHHHHHhHhCCCccchHHHHHHHHHHhCCC------chhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccc
Q 037716 90 KIHKAMRYSLLAGGKRVRPLLCIASCELVGGD------ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEV 163 (354)
Q Consensus 90 ~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~------~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~ 163 (354)
.+.+++.|++..||||+||+|++++++++|+. .+.++++|++|||||++||||||| ||+|++|||+||+|++
T Consensus 49 ~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDI--mD~s~~RRG~pt~h~~ 126 (380)
T 3lk5_A 49 DAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVHRA 126 (380)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HTC-------------
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCC--cCCCCCCCCCcchhHH
Confidence 47788889889999999999999999999874 578899999999999999999997 9999999999999997
Q ss_pred ----------------cChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCC-
Q 037716 164 ----------------FGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD- 226 (354)
Q Consensus 164 ----------------~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~- 226 (354)
||+++|||+||||+++|++++++. +.+++...+++..++.+. .+++.||.+|+.+....
T Consensus 127 f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~ 202 (380)
T 3lk5_A 127 VEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS--GLSAEALARTRDAWRGMR--TEVIGGQLLDIYLESHAN 202 (380)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCC
Confidence 599999999999999999999974 345555556666666655 68999999999987543
Q ss_pred CCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCC
Q 037716 227 VSLKELEYIHVHKTAKL-LEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKA 305 (354)
Q Consensus 227 ~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~ 305 (354)
.++++|..|+++|||+| |++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|||.|+||++||+
T Consensus 203 ~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~ 282 (380)
T 3lk5_A 203 ESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKR 282 (380)
T ss_dssp CCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCC
T ss_pred CCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc
Confidence 78999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhH----------------------------------------HHHHHHHHHHHHHHHHHhhccCC--CCHHHHH
Q 037716 306 TYPKLMGI----------------------------------------ENAKSFAGELLGQAIEELAYFEA--SKAAPLY 343 (354)
Q Consensus 306 T~p~l~~l----------------------------------------e~a~~~~~~~~~~A~~~L~~l~~--~~~~~L~ 343 (354)
|||+++++ +++++.++++.++|++.|+.++. ..++.|.
T Consensus 283 T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~ 362 (380)
T 3lk5_A 283 TVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLR 362 (380)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHH
T ss_pred hHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999854 44556688999999999999973 3578999
Q ss_pred HHHHHHHhcc
Q 037716 344 FLANYIASRQ 353 (354)
Q Consensus 344 ~l~~~~~~R~ 353 (354)
.|++++..|.
T Consensus 363 ~La~~~~~~~ 372 (380)
T 3lk5_A 363 ALAIRSTERR 372 (380)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999999885
No 30
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.2e-59 Score=448.90 Aligned_cols=230 Identities=27% Similarity=0.350 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCC-CchhhhhHHHHHHHHHHHHhhhCCCC
Q 037716 68 MIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG-DESWAMPAACALEMIHTMSLIHDDLP 146 (354)
Q Consensus 68 l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~-~~~~~~~lA~avEliH~asLIhDDI~ 146 (354)
++.+++.|++.|++.+....| ++++|++..||||+||.+++++++++|+ +.+.+.++|++|||||+||||||||
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~----~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi- 83 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV- 83 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC----HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccCCH----HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCC-
Confidence 455677888989888866445 9999999999999999999999999998 7788899999999999999999997
Q ss_pred CCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCC
Q 037716 147 FLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD 226 (354)
Q Consensus 147 viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~ 226 (354)
||+|++|||+||+|.+||+++|||+||||++.||+.+++... . +++..+++++ .+++.||.+|+.+....
T Consensus 84 -~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~ 153 (299)
T 1v4e_A 84 -IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGN----N---KLRRAFLNVI--GKMSEAELIEQLSRYKP 153 (299)
T ss_dssp -HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC----H---HHHHHHHHHH--HHHHHHHHHHHHHTTSC
T ss_pred -CCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCCh----H---HHHHHHHHHH--HHHhhhHHHHHHccCCC
Confidence 999999999999999999999999999999999999998621 2 4555666666 78999999999987655
Q ss_pred CCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCc
Q 037716 227 VSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKAT 306 (354)
Q Consensus 227 ~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T 306 (354)
+++++|..|+.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+|+++||+|
T Consensus 154 ~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T 229 (299)
T 1v4e_A 154 ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVAS 229 (299)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCC
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCch
Confidence 899999999999999999999999999999876 89999999999999999999999999 99999999999999999
Q ss_pred HHHHHhHHHH
Q 037716 307 YPKLMGIENA 316 (354)
Q Consensus 307 ~p~l~~le~a 316 (354)
||++++++.+
T Consensus 230 ~p~l~al~~~ 239 (299)
T 1v4e_A 230 FPLVTAMEKF 239 (299)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999876543
No 31
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=4.1e-59 Score=442.86 Aligned_cols=266 Identities=19% Similarity=0.245 Sum_probs=241.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHh
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSL 140 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asL 140 (354)
-+...++++...+.|++.|++.++...++.+.++++|.+. ||||+||.+++++++++|++.+.+.++|+++||||+|||
T Consensus 8 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 86 (289)
T 2azj_A 8 HMSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASL 86 (289)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999975434569999999998 999999999999999999988889999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHH-HhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037716 141 IHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV-AVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219 (354)
Q Consensus 141 IhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l-~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lD 219 (354)
||||| ||+|++|||+||+|.+||+++|||+||+|++.||+.+ ++.. + +++..+++++ .+++.||.+|
T Consensus 87 IHDDi--~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~----~----~~~~~~~~~~--~~~~~GQ~~d 154 (289)
T 2azj_A 87 ALCDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG----D----DALNTSIELW--KDTSVGALRD 154 (289)
T ss_dssp HHHHH--HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHHHHT
T ss_pred HhCCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc----H----HHHHHHHHHH--HHHHHHHHHH
Confidence 99997 9999999999999999999999999999999999999 8752 2 3556666666 8899999999
Q ss_pred hhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 220 IASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 220 l~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
+.+ +++|..++.+|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |
T Consensus 155 l~~------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---d 220 (289)
T 2azj_A 155 MYD------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---E 220 (289)
T ss_dssp TTT------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---T
T ss_pred Hhh------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---h
Confidence 975 467888999999999999999999999 89999999999999999999999999999986 465 8
Q ss_pred hhcCCCcHHHHH---hHHHH-HHHHHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHhcc
Q 037716 300 LASGKATYPKLM---GIENA-KSFAGELLGQAIEELAYFEA--SKAAPLYFLANYIASRQ 353 (354)
Q Consensus 300 l~~gk~T~p~l~---~le~a-~~~~~~~~~~A~~~L~~l~~--~~~~~L~~l~~~~~~R~ 353 (354)
+++||+|||+++ +++.+ +..++++.++|++.|+.||. +.++.|..+++|+++|.
T Consensus 221 l~~gk~Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 221 IDGSAKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp CCTTGGGGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred hhcCcccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 999999999999 88888 88999999999999999964 35789999999999985
No 32
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=3.2e-59 Score=448.55 Aligned_cols=265 Identities=23% Similarity=0.277 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCc--hhhhhHHHHHHHHHHHHhhhCCCC
Q 037716 69 IRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE--SWAMPAACALEMIHTMSLIHDDLP 146 (354)
Q Consensus 69 ~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~--~~~~~lA~avEliH~asLIhDDI~ 146 (354)
++.++.|++.|++.+....++.+.+ .|.+..||||+||++++++++..+... +.+.++|++|||||+||||||||
T Consensus 3 ~~~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi- 79 (315)
T 3tc1_A 3 EKQLKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV- 79 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCC-
Confidence 3456788888888886433333444 688889999999999999988433222 56679999999999999999997
Q ss_pred CCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC-
Q 037716 147 FLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK- 225 (354)
Q Consensus 147 viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~- 225 (354)
||+|++|||+||+|++||+++|||+||||++.||+.++++. . +++..+++++ .+++.||.+|+.+...
T Consensus 80 -~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-----~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~ 148 (315)
T 3tc1_A 80 -IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-----E---LIAQALSNAV--LRLSRGEIEDVFVGECF 148 (315)
T ss_dssp -C----------------CCSHHHHHHHHHHHHHHHHHTTSC-----H---HHHHHHHHHH--HHHHHHHHHHHHHTTSC
T ss_pred -CCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-----H---HHHHHHHHHH--HHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999998742 2 4555566666 8899999999998765
Q ss_pred CCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCC
Q 037716 226 DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKA 305 (354)
Q Consensus 226 ~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~ 305 (354)
.+++++|..|+++|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+|||.|+|+++||+
T Consensus 149 ~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~ 225 (315)
T 3tc1_A 149 NSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT 225 (315)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC
T ss_pred CCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh
Confidence 489999999999999999999999999999987 67899999999999999999999999999999999999999999
Q ss_pred cHHHHH------------------------------------hHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHH
Q 037716 306 TYPKLM------------------------------------GIENAKSFAGELLGQAIEELAYFEA-SKAAPLYFLANY 348 (354)
Q Consensus 306 T~p~l~------------------------------------~le~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~ 348 (354)
|||+++ +++++++.++++.++|++.|+.||. +.++.|..+++|
T Consensus 226 T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~ 305 (315)
T 3tc1_A 226 TLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISR 305 (315)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999997 4677888899999999999999965 446889999887
Q ss_pred HH
Q 037716 349 IA 350 (354)
Q Consensus 349 ~~ 350 (354)
+.
T Consensus 306 ~~ 307 (315)
T 3tc1_A 306 TF 307 (315)
T ss_dssp --
T ss_pred HH
Confidence 63
No 33
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.1e-58 Score=454.77 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=241.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcC----CCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCc----h---hhhhHHHH
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVL----QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE----S---WAMPAACA 131 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~----~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~----~---~~~~lA~a 131 (354)
.+..|+......|+..++..++. ..|+.+.++++|.+ .||||+||++|+++++++|++. + .+.++|++
T Consensus 34 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~a 112 (374)
T 2qis_A 34 EKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWC 112 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHH
Confidence 46778888888888888887653 23456889999876 8999999999999999998752 2 46789999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChH-HHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q 037716 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGES-TAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVE 210 (354)
Q Consensus 132 vEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~ 210 (354)
|||||+|||||||| ||+|++|||+||+|++||++ +||++||+|++.+|+.+++.....+ ...+++..+++++ .
T Consensus 113 vEliH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~ 186 (374)
T 2qis_A 113 VELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQP--YYLNLIELFLQSS--Y 186 (374)
T ss_dssp HHHHHHHHHHHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHccc--cCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHH--H
Confidence 99999999999997 99999999999999999999 9999999999999999998632211 2234555555555 7
Q ss_pred hhhhhhhhhhhccCC------CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhh
Q 037716 211 GLVAGEFVDIASEGK------DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDI 282 (354)
Q Consensus 211 ~~~~GQ~lDl~~~~~------~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~ 282 (354)
+++.||.+|+.+... .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||+
T Consensus 187 ~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDi 266 (374)
T 2qis_A 187 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDY 266 (374)
T ss_dssp HHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998753 269999999999999999 9999999999999 99999999999999999999999999
Q ss_pred hhhcCChhhhCCccchhhhcCCCcHHHHHhHHH------------------------------------HHHHHHHHHHH
Q 037716 283 LDVTKSSEELGKTAGKDLASGKATYPKLMGIEN------------------------------------AKSFAGELLGQ 326 (354)
Q Consensus 283 lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~------------------------------------a~~~~~~~~~~ 326 (354)
+|++++++.+|| .|+|+++||+|||++++++. +++.++++.++
T Consensus 267 LD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~ 345 (374)
T 2qis_A 267 LDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSH 345 (374)
T ss_dssp HHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999986643 23446788899
Q ss_pred HHHHhhccCC-CCHHHHHHHHHHHHhccC
Q 037716 327 AIEELAYFEA-SKAAPLYFLANYIASRQN 354 (354)
Q Consensus 327 A~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 354 (354)
|++.|+.|+. ..++.|..|++++.+|++
T Consensus 346 a~~~L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 346 IMALIEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHC----
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHcCcC
Confidence 9999999964 467899999999999975
No 34
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.1e-59 Score=446.61 Aligned_cols=257 Identities=23% Similarity=0.274 Sum_probs=218.3
Q ss_pred HHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCC
Q 037716 80 DEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159 (354)
Q Consensus 80 ~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt 159 (354)
++.+.+. ++.+.++++|++..||||+||.+++++++++|++.+.+.++|+++||||+|||||||| ||+|++|||+||
T Consensus 3 ~k~~~~~-~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt 79 (301)
T 2q80_A 3 EKTQETV-QRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFPV 79 (301)
T ss_dssp ----CCH-HHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEEC
T ss_pred ccccCCC-cHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCcc
Confidence 3444443 3458899999999999999999999999999988888999999999999999999997 999999999999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC--CCCHHHHHHHHH
Q 037716 160 SHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK--DVSLKELEYIHV 237 (354)
Q Consensus 160 ~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~--~~~~~~~~~i~~ 237 (354)
+|.+||+++|||+||||++.|++.+++... + .+.+ .+++++ .+++.||.+|+.+... .+++++|..|++
T Consensus 80 ~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~---~-~~~~---~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~ 150 (301)
T 2q80_A 80 AHSIYGIPSVINSANYVYFLGLEKVLTLDH---P-DAVK---LFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMVL 150 (301)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTCC---T-THHH---HHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHCCC---H-HHHH---HHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999998532 1 2233 344555 7899999999988543 478999999999
Q ss_pred hchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhH----
Q 037716 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGI---- 313 (354)
Q Consensus 238 ~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l---- 313 (354)
+|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+|+++||+|||+++++
T Consensus 151 ~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~ 226 (301)
T 2q80_A 151 QKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRP 226 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCc
Confidence 9999999999999999999763 58999999999999999999999999999999999999999999999854
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccC
Q 037716 314 --------------------------------ENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354 (354)
Q Consensus 314 --------------------------------e~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 354 (354)
+++++.++++.++|++.|+.++... .|..+++++..|.+
T Consensus 227 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~--~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 227 ESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP--ELVALVKHLSKMFK 297 (301)
T ss_dssp TCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCC
T ss_pred cchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhc
Confidence 3667889999999999999997533 49999999988864
No 35
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.5e-58 Score=448.96 Aligned_cols=236 Identities=19% Similarity=0.242 Sum_probs=200.0
Q ss_pred HHHHHHHHHhcC--CCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCC
Q 037716 74 QVNKALDEAVVL--QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDND 151 (354)
Q Consensus 74 ~i~~~L~~~~~~--~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s 151 (354)
.|+..+.+.... ..++.+.++++|++..||||+||.+++++++++|++.+.+.++|++|||||+|||||||| ||+|
T Consensus 9 ~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI--~D~s 86 (340)
T 2e8v_A 9 KIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI--EDNA 86 (340)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HTTC
T ss_pred HHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCcc--ccCC
Confidence 466666665532 123469999999999999999999999999999988888999999999999999999997 9999
Q ss_pred CCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC----CC
Q 037716 152 ERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK----DV 227 (354)
Q Consensus 152 ~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~----~~ 227 (354)
++|||+||+|.+||+++|||+||||++.|++.++++.. +.+...+++..+++++ .+++.||.+|+.+... .+
T Consensus 87 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 87 PLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTT--KEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp SEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCC
T ss_pred CCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCC
Confidence 99999999999999999999999999999999998632 3345556777777777 8999999999987642 36
Q ss_pred CHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcH
Q 037716 228 SLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATY 307 (354)
Q Consensus 228 ~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~ 307 (354)
++++|..|+.+|||+||+++|++|++++|.++ ..+.+++||.++|+||||+||++|++++++.+|||.|+|+++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 99999999999999999999999999999877 58899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHH
Q 037716 308 PKLMGIENA 316 (354)
Q Consensus 308 p~l~~le~a 316 (354)
|++++++.+
T Consensus 242 p~i~al~~~ 250 (340)
T 2e8v_A 242 PIVHALNFT 250 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999866543
No 36
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=4.8e-58 Score=449.17 Aligned_cols=284 Identities=19% Similarity=0.220 Sum_probs=240.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcC-----CCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCC----chh---hhh---
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVL-----QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD----ESW---AMP--- 127 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~-----~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~----~~~---~~~--- 127 (354)
++..|+......++..++...+. ..+..+.++++|.+ .||||+||++++++++++|++ .+. +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (362)
T 1yhl_A 3 SMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDAC 81 (362)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHH
Confidence 45566666666677766665421 12346888888886 899999999999999999875 222 344
Q ss_pred -HHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccCh--HHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 037716 128 -AACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGE--STAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMC 204 (354)
Q Consensus 128 -lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~--~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~ 204 (354)
+|++|||||+|||||||| ||+|++|||+||+|++||+ ++|||+||+|++.|++.+++.... ++...+++..++
T Consensus 82 ~~a~avEliH~asLiHDDI--~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~ 157 (362)
T 1yhl_A 82 VGGWMIEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD--RPFLKDLLCLFQ 157 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT--CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc--cCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHH
Confidence 789999999999999997 9999999999999999999 589999999999999999986322 122335566666
Q ss_pred HHhhhhhhhhhhhhhhhcc-----------C--C----CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH
Q 037716 205 SAMGVEGLVAGEFVDIASE-----------G--K----DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERV 265 (354)
Q Consensus 205 ~a~g~~~~~~GQ~lDl~~~-----------~--~----~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l 265 (354)
+++ .+++.||.+|+.+. . . .+++++|..|+.+|||+| |++||++|++++| ++++..+.+
T Consensus 158 ~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l 235 (362)
T 1yhl_A 158 KVD--YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLV 235 (362)
T ss_dssp HHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHH
T ss_pred HHH--HHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 666 78999999999887 2 2 378999999999999999 9999999999999 888889999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHh---------------------------------
Q 037716 266 RNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMG--------------------------------- 312 (354)
Q Consensus 266 ~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~--------------------------------- 312 (354)
++||.++|+||||+||++|++++++.+|| .|+||++||+|||++++
T Consensus 236 ~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 314 (362)
T 1yhl_A 236 ERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSE 314 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999983
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhccCCC-CH--HHHHHHHHHHHhccC
Q 037716 313 ---IENAKSFAGELLGQAIEELAYFEAS-KA--APLYFLANYIASRQN 354 (354)
Q Consensus 313 ---le~a~~~~~~~~~~A~~~L~~l~~~-~~--~~L~~l~~~~~~R~~ 354 (354)
+++++++++++.++|++.|+.|+.. .+ +.|..+++++++|++
T Consensus 315 ~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 315 ANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 3455677889999999999999654 46 889999999999975
No 37
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=6.5e-58 Score=451.33 Aligned_cols=284 Identities=21% Similarity=0.250 Sum_probs=228.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCc-----hhHHHHHHHhHhCCCccchHHHHHHHHHHhCCC------chhhhhHH
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPP-----VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD------ESWAMPAA 129 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p-----~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~------~~~~~~lA 129 (354)
.-+|..++.+..+.|.+.+.+......+ ..+.++++|.+ .||||+||++|+++++++|++ .+.+.++|
T Consensus 33 ~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA 111 (395)
T 2ihi_A 33 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLA 111 (395)
T ss_dssp --CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 4567777777778888877763221122 45668899987 999999999999999999875 25678999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHH--HHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037716 130 CALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGEST--AILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAM 207 (354)
Q Consensus 130 ~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~--AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~ 207 (354)
+||||||+|||||||| ||+|++|||+||+|++||++. |||+||+|++.+++++++...+. +...+++..+++++
T Consensus 112 ~aiEliH~asLIHDDI--mD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~--~~~~~~~~~~~~~~ 187 (395)
T 2ihi_A 112 WCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNE--SCYVDVIATFRDAT 187 (395)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--ccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHH
Confidence 9999999999999997 999999999999999999998 99999999999999999853221 12345556666666
Q ss_pred hhhhhhhhhhhhhh-c--------------------cCC----CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHH
Q 037716 208 GVEGLVAGEFVDIA-S--------------------EGK----DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGGGNAIE 261 (354)
Q Consensus 208 g~~~~~~GQ~lDl~-~--------------------~~~----~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag~~~~~ 261 (354)
.+++.||.+|+. | .+. .+++++|..|+.+|||+| |.+||++|++++|++++.
T Consensus 188 --~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~ 265 (395)
T 2ihi_A 188 --LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN 265 (395)
T ss_dssp --HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTC
T ss_pred --HHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhh
Confidence 789999999992 2 222 378999999999999999 999999999999998887
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHH----------------------------
Q 037716 262 --VERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM---------------------------- 311 (354)
Q Consensus 262 --~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~---------------------------- 311 (354)
.+.++.||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++
T Consensus 266 ~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v 344 (395)
T 2ihi_A 266 LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVI 344 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHH
Confidence 899999999999999999999999999999999 9999999999999998
Q ss_pred --------hHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHhc
Q 037716 312 --------GIENAKSFAGELLGQAIEELAYFEA-SKAAPLYFLANYIASR 352 (354)
Q Consensus 312 --------~le~a~~~~~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R 352 (354)
+++++++.++++.++|++.|+.+|. ..++.|..|++++.+|
T Consensus 345 ~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R 394 (395)
T 2ihi_A 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp HHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC----
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcc
Confidence 3456677889999999999999976 5578999999999988
No 38
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.3e-57 Score=446.08 Aligned_cols=283 Identities=19% Similarity=0.210 Sum_probs=241.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC----CchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCC----ch---hhhhHHHHH
Q 037716 64 FEEYMIRKAEQVNKALDEAVVLQ----PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD----ES---WAMPAACAL 132 (354)
Q Consensus 64 ~~~~l~~~~~~i~~~L~~~~~~~----~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~----~~---~~~~lA~av 132 (354)
...|+......++..++...+.. .|..+.++++|.+ .||||+||++|+++++++|+. .+ .+.++|++|
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~ai 106 (367)
T 1uby_A 28 REEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCI 106 (367)
T ss_dssp HHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHH
Confidence 34566666667777777665422 2357889999987 799999999999999999874 22 478999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChH-HHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhh
Q 037716 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGES-TAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEG 211 (354)
Q Consensus 133 EliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~ 211 (354)
||||+|||||||| ||+|++|||+||+|++||++ ++|+.||++++.+|+.+++.....+ ...+++..+++++ ..
T Consensus 107 EliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~~ 180 (367)
T 1uby_A 107 ELFQAASLVADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP--YYVHLLELFLQTA--YQ 180 (367)
T ss_dssp HHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHhCcc--cCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHH--HH
Confidence 9999999999997 99999999999999999999 9999999999999999998633211 1234455555555 78
Q ss_pred hhhhhhhhhhccCC------CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037716 212 LVAGEFVDIASEGK------DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 212 ~~~GQ~lDl~~~~~------~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~l 283 (354)
++.||.+|+.+... .+++++|..|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++
T Consensus 181 ~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~L 260 (367)
T 1uby_A 181 TELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYL 260 (367)
T ss_dssp HHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988642 479999999999999999 9999999999999 899999999999999999999999999
Q ss_pred hhcCChhhhCCccchhhhcCCCcHHHHHhHHHH------------------------------------HHHHHHHHHHH
Q 037716 284 DVTKSSEELGKTAGKDLASGKATYPKLMGIENA------------------------------------KSFAGELLGQA 327 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a------------------------------------~~~~~~~~~~A 327 (354)
|++++++.+|| .|+|+++||+|||++++++.+ ++.++++.++|
T Consensus 261 D~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A 339 (367)
T 1uby_A 261 DCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRL 339 (367)
T ss_dssp HHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999976542 24577889999
Q ss_pred HHHhhccCC-CCHHHHHHHHHHHHhccC
Q 037716 328 IEELAYFEA-SKAAPLYFLANYIASRQN 354 (354)
Q Consensus 328 ~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 354 (354)
++.|+.++. ..++.|..|++++.+|++
T Consensus 340 ~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 340 QELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 999999964 457999999999999975
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.7e-57 Score=446.70 Aligned_cols=283 Identities=21% Similarity=0.229 Sum_probs=232.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC--CCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCC-------------CchhhhhH
Q 037716 64 FEEYMIRKAEQVNKALDEAVVL--QPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG-------------DESWAMPA 128 (354)
Q Consensus 64 ~~~~l~~~~~~i~~~L~~~~~~--~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~-------------~~~~~~~l 128 (354)
|..++....+.+.+.+....+. ..+..+.++++|.+ .||||+||++|+++++++|+ +.+.++++
T Consensus 29 f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (390)
T 3dyh_A 29 FMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHD 107 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHH
Confidence 4444444444444444443332 12346889999998 99999999999999999886 23456666
Q ss_pred HH----HHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHH--HHHHHhhccCCChHHHHHHHHH
Q 037716 129 AC----ALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA--LEHVAVNIAGVSPDRVVRAIAE 202 (354)
Q Consensus 129 A~----avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a--~~~l~~~~~~~~~~~~~~~i~~ 202 (354)
|+ ||||||+|||||||| ||+|++|||+||+|+.||+++||++||+|+..+ ++++++...+.+ ...++++.
T Consensus 108 A~~~g~avEliH~asLIHDDI--mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~--~~~~~~~~ 183 (390)
T 3dyh_A 108 ACVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRP--FLQDLLCR 183 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCT--THHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHcCC--cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCch--hHHHHHHH
Confidence 65 799999999999997 999999999999999999999999999999754 678877432212 12344555
Q ss_pred HHHHhhhhhhhhhhhhhhhcc----------C-------CCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHH-HH
Q 037716 203 MCSAMGVEGLVAGEFVDIASE----------G-------KDVSLKELEYIHVHKTAKL-LEAAVVCGAVIGGGNAIE-VE 263 (354)
Q Consensus 203 l~~a~g~~~~~~GQ~lDl~~~----------~-------~~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag~~~~~-~~ 263 (354)
+++++ ..++.||.+|+.+. . ..+++++|..|+.+|||+| |++||++|++++|++++. .+
T Consensus 184 ~~~~~--~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~ 261 (390)
T 3dyh_A 184 FNRVD--YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMG 261 (390)
T ss_dssp HHHHH--HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHH
T ss_pred HHHHH--HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHH
Confidence 55555 78999999999872 1 1378999999999999999 999999999999988775 78
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHH--------------------------------
Q 037716 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM-------------------------------- 311 (354)
Q Consensus 264 ~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~-------------------------------- 311 (354)
.+++||.++|+||||+||++|+++|++.+|| .|+|+++||+|||+++
T Consensus 262 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~ 340 (390)
T 3dyh_A 262 VTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLY 340 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999998
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHhccC
Q 037716 312 ----GIENAKSFAGELLGQAIEELAYFEASK---AAPLYFLANYIASRQN 354 (354)
Q Consensus 312 ----~le~a~~~~~~~~~~A~~~L~~l~~~~---~~~L~~l~~~~~~R~~ 354 (354)
++++++++++++.++|++.|+.++... ++.|..|++++.+|+|
T Consensus 341 ~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 341 EEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 345677788999999999999996533 6899999999999986
No 40
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=4.2e-56 Score=419.42 Aligned_cols=254 Identities=29% Similarity=0.514 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCC
Q 037716 65 EEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDD 144 (354)
Q Consensus 65 ~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLIhDD 144 (354)
.+|++...+.|++.|++.++...|..+.++++|++..||||+||.||+++++++|++.+.+.++|++|||||+|||||||
T Consensus 2 ~~~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDD 81 (274)
T 3kra_B 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEH 81 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 47889999999999999999877877999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccC---CChHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 037716 145 LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG---VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIA 221 (354)
Q Consensus 145 I~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~---~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~ 221 (354)
||++|++ .|||+||+|++||+++|||+||+|++.||+.+++.... .++..+.+++.++++++|..+++.||.+|+.
T Consensus 82 I~~dD~d-~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~ 160 (274)
T 3kra_B 82 LPLTDGS-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEE 160 (274)
T ss_dssp CCCSSSS-SCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTT
T ss_pred CcccCCc-cCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 9645665 79999999999999999999999999999999986432 2245678899999999888899999999999
Q ss_pred ccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh
Q 037716 222 SEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301 (354)
Q Consensus 222 ~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~ 301 (354)
+....+++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|++|||.||.+- ||
T Consensus 161 ~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~~--------~~------- 225 (274)
T 3kra_B 161 IVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS--------HQ------- 225 (274)
T ss_dssp CCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT--------SC-------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc--------cc-------
Confidence 987668999999999999999999999999999999999999999999999999999999711 22
Q ss_pred cCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q 037716 302 SGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLA 346 (354)
Q Consensus 302 ~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~ 346 (354)
+.+++.++++.++|++.|+.|+.+...+|..|+
T Consensus 226 ------------~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 226 ------------LIDENIIGKLKELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGG
T ss_pred ------------HHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHH
Confidence 445788999999999999999876667777665
No 41
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3e-56 Score=440.84 Aligned_cols=281 Identities=21% Similarity=0.299 Sum_probs=219.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCchh-----HHHHHHHhHhCCCccchHHHHHHHHHHhCCCc------hhhhhHH
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVK-----IHKAMRYSLLAGGKRVRPLLCIASCELVGGDE------SWAMPAA 129 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p~~-----l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~------~~~~~lA 129 (354)
...|...+++.++.|.+.|.+......|.. +...+.|.+ .||||+||++|+++++++|+.. +.+.++|
T Consensus 33 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A 111 (395)
T 3mav_A 33 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLA 111 (395)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 456788888888888888887654333322 333456665 7999999999999999997643 5678999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037716 130 CALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL--SLALEHVAVNIAGVSPDRVVRAIAEMCSAM 207 (354)
Q Consensus 130 ~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll--~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~ 207 (354)
+||||||+|||||||| ||+|++|||+||+|++||+++||++||+|+ +.++.++.....+ .....+++..+++++
T Consensus 112 ~aiEliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~--~~~~~~~~~~~~~~~ 187 (395)
T 3mav_A 112 WCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT 187 (395)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH--hcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccC--hhHHHHHHHHHHHHH
Confidence 9999999999999997 999999999999999999999999999976 4567777664322 223446666777776
Q ss_pred hhhhhhhhhhhhhhccCC-------------------------CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcCCC--H
Q 037716 208 GVEGLVAGEFVDIASEGK-------------------------DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGGGN--A 259 (354)
Q Consensus 208 g~~~~~~GQ~lDl~~~~~-------------------------~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag~~--~ 259 (354)
..++.||.+|+.+... .+++++|..|+.+|||+| |.+||.+|++++|.+ +
T Consensus 188 --~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~ 265 (395)
T 3mav_A 188 --LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN 265 (395)
T ss_dssp --HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTC
T ss_pred --HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchh
Confidence 7899999999976431 158999999999999999 999999999999874 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhH--------------------------
Q 037716 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGI-------------------------- 313 (354)
Q Consensus 260 ~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l-------------------------- 313 (354)
+.++.+++||.++|+||||+||++|+++|++.+|| .|+||++||+|||+++++
T Consensus 266 ~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v 344 (395)
T 3mav_A 266 LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVI 344 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHH
Confidence 46789999999999999999999999999999999 599999999999999854
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 037716 314 ----------ENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASR 352 (354)
Q Consensus 314 ----------e~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R 352 (354)
+++++.++++.++|.+.|+.++. +.++.+.+++++|
T Consensus 345 ~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~---~~l~~ll~~lle~ 390 (395)
T 3mav_A 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHH---EGIEYVLKYLLEI 390 (395)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHH
Confidence 34556678888899999998864 3455555555544
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=2.9e-57 Score=442.10 Aligned_cols=279 Identities=18% Similarity=0.144 Sum_probs=236.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCc-----hhHHHHHHHhHhCCCccchHHHHHHHHHHhCCC----chhhhhHHHH
Q 037716 61 TFPFEEYMIRKAEQVNKALDEAVVLQPP-----VKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD----ESWAMPAACA 131 (354)
Q Consensus 61 ~~~~~~~l~~~~~~i~~~L~~~~~~~~p-----~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~----~~~~~~lA~a 131 (354)
..+|..++.+..+.|.+.+...-....| ..+.++++|.+ .||||+||++|+++++++|+. .+.+.++|++
T Consensus 25 ~~~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~a 103 (368)
T 2her_A 25 YTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWV 103 (368)
T ss_dssp CTTGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHH
Confidence 4566666777777777766654333334 45566777776 999999999999999999863 3578999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHH---HHHHHHHHhhccCCChHHHHHHHHHHHHHhh
Q 037716 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL---SLALEHVAVNIAGVSPDRVVRAIAEMCSAMG 208 (354)
Q Consensus 132 vEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll---~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g 208 (354)
|||||+|||||||| ||+|++|||+||+|++||+.+|||+||+|+ +.+++++++... .....+++..+++++
T Consensus 104 vEllH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~---~~~~~~~~~~~~~~~- 177 (368)
T 2her_A 104 VEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFG---NDIVMKIQKIYNESI- 177 (368)
T ss_dssp HHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHC---HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccc--ccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcC---cChHHHHHHHHHHHH-
Confidence 99999999999997 999999999999999999999999999999 889998887421 111456777777777
Q ss_pred hhhhhhhhhhhhhccCC--CCCH-HHHHHHHHhchHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHHHhh
Q 037716 209 VEGLVAGEFVDIASEGK--DVSL-KELEYIHVHKTAKL-LEAAVVCGAVIGGGNAIE--VERVRNYARCIGLLFQVVDDI 282 (354)
Q Consensus 209 ~~~~~~GQ~lDl~~~~~--~~~~-~~~~~i~~~KTg~L-f~~~~~~ga~lag~~~~~--~~~l~~~g~~lG~afQI~DD~ 282 (354)
.+++.||.+|+.+... ..+. ++|..|+++|||+| |++||++|++++|++++. .+.+++||.++|+||||+||+
T Consensus 178 -~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~ 256 (368)
T 2her_A 178 -FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDV 256 (368)
T ss_dssp -HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998753 3455 89999999999999 999999999999998887 899999999999999999999
Q ss_pred hhhcCChhhhCCccchhhhcCCCcHHHHH--------------------------------hHHHHHHHHHHHHHHHHHH
Q 037716 283 LDVTKSSEELGKTAGKDLASGKATYPKLM--------------------------------GIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 283 lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~--------------------------------~le~a~~~~~~~~~~A~~~ 330 (354)
+|++ .+|| .|+||++||+|||+++ +++++++.++++.++|++.
T Consensus 257 LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~ 331 (368)
T 2her_A 257 SDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKL 331 (368)
T ss_dssp HHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 9998 7899 9999999999999987 3466778899999999999
Q ss_pred hhccCC-CCHHHHHHHHHHHHhc
Q 037716 331 LAYFEA-SKAAPLYFLANYIASR 352 (354)
Q Consensus 331 L~~l~~-~~~~~L~~l~~~~~~R 352 (354)
|+.+|. ..++.|..|++++.+|
T Consensus 332 L~~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 332 VKDITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHH
Confidence 999965 4568999999999876
No 43
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=6.9e-54 Score=404.24 Aligned_cols=254 Identities=27% Similarity=0.452 Sum_probs=228.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCCCchhhhhHHHHHHHHHHHHhh
Q 037716 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141 (354)
Q Consensus 62 ~~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~lA~avEliH~asLI 141 (354)
..+.+|++...+.|++.|++.++...|..+.++++|++..||||+||++|+++++++|++.+.+.++|++|||||+||||
T Consensus 4 ~~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 83 (273)
T 3qkc_B 4 TRTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYT 83 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998877877999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccC--CChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037716 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAG--VSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219 (354)
Q Consensus 142 hDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~--~~~~~~~~~i~~l~~a~g~~~~~~GQ~lD 219 (354)
|||| +|+|+ |||+||+|++||+++|||+||+|++.||+.+++.... .++..+.+++.++++++|..+++.||.+|
T Consensus 84 HDDI--~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lD 160 (273)
T 3qkc_B 84 HENL--PLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHE 160 (273)
T ss_dssp HHSC--CBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HcCc--ccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 9998 68887 9999999999999999999999999999999986431 23567788999999998888999999999
Q ss_pred hhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 220 IASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 220 l~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
+.+. ...+.++++.|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||+.+- +
T Consensus 161 l~~~-~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~---~---------- 226 (273)
T 3qkc_B 161 LGLN-QLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSG---F---------- 226 (273)
T ss_dssp TTCC-SSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCST---T----------
T ss_pred HhcC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc---h----------
Confidence 9984 3467777878889999999999999999999999999999999999999999999999741 1
Q ss_pred hhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 037716 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYI 349 (354)
Q Consensus 300 l~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~~~~~~~L~~l~~~~ 349 (354)
.++++++.++|+++|..|+++...+|.++++|-
T Consensus 227 -----------------~~~~~~~~~~a~~~l~~~~~~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 227 -----------------EGRIKELKELAVKELESFGGEKIELIRGVFELE 259 (273)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC-
T ss_pred -----------------HHHHHHHHHHHHHHHHccCchhhhHHHHHHHHH
Confidence 277899999999999999876678999998764
No 44
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=4.3e-56 Score=435.72 Aligned_cols=295 Identities=18% Similarity=0.185 Sum_probs=229.3
Q ss_pred hccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCC----c--hhHHHHHHHhHhCCCccchHHHHHHHHHHh
Q 037716 45 RHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVVLQP----P--VKIHKAMRYSLLAGGKRVRPLLCIASCELV 118 (354)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~----p--~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~ 118 (354)
+.+.+.+..++ ....+|..|++.....|+..+++. +... + +.+.++++|.+ .||||+||++++++++++
T Consensus 12 s~~~~~~~~~~---~~~~df~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~l~Y~~-~GGKrlRp~l~~~~~~~~ 86 (368)
T 2q58_A 12 SGRENLYFQGE---YDYTDFINYYDKFKVIVYNVLKKL-PLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLS 86 (368)
T ss_dssp --------------CCCTTGGGTHHHHHHHHHTTCCCC-CSSCSTTCCHHHHHHHHHHHHT-TCSTTTTTC-CHHHHTTT
T ss_pred CCccccccccc---chHHHHHHHHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHhcCC-CCccchhHHHHHHHHHHh
Confidence 33444444442 345677777766666666666543 2211 1 34667899987 899999999999999999
Q ss_pred CCC----chhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChH
Q 037716 119 GGD----ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPD 194 (354)
Q Consensus 119 g~~----~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~ 194 (354)
|+. .+.++++||||||||+|||||||| ||+|++|||+||+|++||+++|||+||+|++.|++++.++....+.+
T Consensus 87 ~~~~~~~~e~~~~la~aiEliH~asLiHDDi--mD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~ 164 (368)
T 2q58_A 87 SAYSNIKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGND 164 (368)
T ss_dssp TCCCSSSHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChH
Confidence 864 357889999999999999999997 99999999999999999999999999999999999998765444455
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhccCC---CCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC--CCHHHHHHHHHH
Q 037716 195 RVVRAIAEMCSAMGVEGLVAGEFVDIASEGK---DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG--GNAIEVERVRNY 268 (354)
Q Consensus 195 ~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~---~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag--~~~~~~~~l~~~ 268 (354)
...+++..+++++ ..++.||.+|+.+... +.+.++|..|+.+|||+| |.+||.+|++++| ++++..+.+++|
T Consensus 165 ~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~ 242 (368)
T 2q58_A 165 IVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAI 242 (368)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHH
T ss_pred HHHHHHHHHHHHH--HHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHH
Confidence 6677888888877 7899999999987643 257889999999999998 8999999999998 567778899999
Q ss_pred HHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHH--------------------------------H
Q 037716 269 ARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIEN--------------------------------A 316 (354)
Q Consensus 269 g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~--------------------------------a 316 (354)
|.++|+||||+||++|+++ ||+.|+|+++||+|||++++++. +
T Consensus 243 g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~ 317 (368)
T 2q58_A 243 LYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHY 317 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHH
Confidence 9999999999999999975 89999999999999999985432 2
Q ss_pred HHHHHHHHHHHHHHhhccCCCC-H----HHHHHHHHHHHhcc
Q 037716 317 KSFAGELLGQAIEELAYFEASK-A----APLYFLANYIASRQ 353 (354)
Q Consensus 317 ~~~~~~~~~~A~~~L~~l~~~~-~----~~L~~l~~~~~~R~ 353 (354)
.+.+++..+++.+.++.++... + ..|..+++|+++|+
T Consensus 318 ~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 318 LEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 3445667778888888875422 2 34566777777764
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=2.3e-54 Score=407.81 Aligned_cols=219 Identities=24% Similarity=0.366 Sum_probs=190.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHhCCCccchHHHHHHHHHHhCC---CchhhhhHHHHHHHHHHHH
Q 037716 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG---DESWAMPAACALEMIHTMS 139 (354)
Q Consensus 63 ~~~~~l~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~---~~~~~~~lA~avEliH~as 139 (354)
.+...++++++.|++.|++.++...|+.+.++++|++..||||+||++++++++++|+ +.+.+.++|+++||||+||
T Consensus 5 ~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aS 84 (285)
T 4fp4_A 5 SLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVS 84 (285)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999998764667999999999999999999999999999998 7888999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 037716 140 LIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVD 219 (354)
Q Consensus 140 LIhDDI~viD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lD 219 (354)
|||||| ||+|++|||+||+|++||+++|||+||||++.|++.++++. + +++..+++++ .+++.||.+|
T Consensus 85 LIHDDI--mD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~ls~~~--~~~~~GQ~lD 152 (285)
T 4fp4_A 85 LLQDDV--MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG----A----DVVTYLADVA--QRLSVGQALD 152 (285)
T ss_dssp HHHHHH--HTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC----H----HHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHCCC--CCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh----H----HHHHHHHHHH--HHHHHhHHHH
Confidence 999997 99999999999999999999999999999999999999752 2 5566667777 7899999999
Q ss_pred hhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchh
Q 037716 220 IASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299 (354)
Q Consensus 220 l~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~D 299 (354)
+.+... . |+++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++ .||+.|+|
T Consensus 153 l~~~~~-----~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~D 222 (285)
T 4fp4_A 153 LEGERD-----K---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANE 222 (285)
T ss_dssp HTTCHH-----H---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHH
T ss_pred Hhcccc-----c---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHH
Confidence 988641 1 889999999999999999999998 8889999999999999999999999999865 68889999
Q ss_pred hhcC
Q 037716 300 LASG 303 (354)
Q Consensus 300 l~~g 303 (354)
|+++
T Consensus 223 I~e~ 226 (285)
T 4fp4_A 223 IGRY 226 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9966
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=95.53 E-value=0.68 Score=43.02 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=68.7
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
..++.|...|+.... ..+.++++.-+.+=.|....+.+. +++..+++ ...++.++|+|+|+.|=+.|+-
T Consensus 107 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~--- 175 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT-YDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDID--- 175 (294)
T ss_dssp HHHHHHHHHHHHCSB-CCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHH---
T ss_pred HHHHHHHHhccccCC-CCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhch---
Confidence 456788888886543 257787776555555555555444 34444443 3467889999999999888874
Q ss_pred hhhCCccchhhhcCCCcHHH----------------------HHhHHHHHHHHHHHHHHHHHHhhccCCC
Q 037716 290 EELGKTAGKDLASGKATYPK----------------------LMGIENAKSFAGELLGQAIEELAYFEAS 337 (354)
Q Consensus 290 ~~~GK~~g~Dl~~gk~T~p~----------------------l~~le~a~~~~~~~~~~A~~~L~~l~~~ 337 (354)
.|+..|++-+|. .-.++.--..++.+.++|...+..+|..
T Consensus 176 --------eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 176 --------RDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp --------HHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred --------hhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 344555555543 2234444455677777777777777643
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.05 E-value=0.57 Score=44.67 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=72.2
Q ss_pred hhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChh
Q 037716 211 GLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSE 290 (354)
Q Consensus 211 ~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~ 290 (354)
.|..|-..|+.. ...+.++++.-+.+-.|....+.+.+-..-...++ ........+.++|.|+|+.|=+.|+
T Consensus 122 ~m~~gm~~dl~~--~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNilRDv----- 193 (343)
T 3vj8_A 122 RMGIGMAEFLDK--HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNIIRDY----- 193 (343)
T ss_dssp HHHHHHHHGGGC--CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHHHHHHhccC--CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHHHHh-----
Confidence 345566667652 23688888877766666766666655433222222 2345678899999999999988887
Q ss_pred hhCCccchhhhcCCCcHHHH----------------------HhHHHHHHHHHHHHHHHHHHhhccCC
Q 037716 291 ELGKTAGKDLASGKATYPKL----------------------MGIENAKSFAGELLGQAIEELAYFEA 336 (354)
Q Consensus 291 ~~GK~~g~Dl~~gk~T~p~l----------------------~~le~a~~~~~~~~~~A~~~L~~l~~ 336 (354)
+.|+..|++-||.= -.+..-...++.+..+|...+..++.
T Consensus 194 ------~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~ 255 (343)
T 3vj8_A 194 ------LEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 255 (343)
T ss_dssp ------HHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred ------HHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34556666666642 23344455667777888888887755
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.62 E-value=0.41 Score=44.45 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=73.7
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCh
Q 037716 210 EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~ 289 (354)
..++.|...|+.... ..+.++++.-+.+=.|....+.+.+ ++..+. ......+.++|.|+|+.|=+.|+
T Consensus 111 ~~li~g~~~Dl~~~~-~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv---- 179 (293)
T 3acx_A 111 YNLIDTVYKDQHFTM-FETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV---- 179 (293)
T ss_dssp HHHHHHHHHHTTCCC-CSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 345567777876432 2578888877666666666665553 233231 23567999999999999977776
Q ss_pred hhhCCccchhhhcCCCcHHHH----------------------HhHHHHHHHHHHHHHHHHHHhhccCCCCHH
Q 037716 290 EELGKTAGKDLASGKATYPKL----------------------MGIENAKSFAGELLGQAIEELAYFEASKAA 340 (354)
Q Consensus 290 ~~~GK~~g~Dl~~gk~T~p~l----------------------~~le~a~~~~~~~~~~A~~~L~~l~~~~~~ 340 (354)
+.|...|++-+|.= -.+..--..++.+..+|...+..++...+-
T Consensus 180 -------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r~ 245 (293)
T 3acx_A 180 -------GEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQP 245 (293)
T ss_dssp -------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHHH
T ss_pred -------HHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHH
Confidence 45777777777751 123333455777888888888888764443
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=89.17 E-value=13 Score=35.53 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=64.1
Q ss_pred hhhhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHHHHH-HHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHhhhh
Q 037716 210 EGLVAGEFVDIASE--GKDVSLKELEYIHVHKTAKLLEA-AVVCGAVIGGGNAIEVE--RVRNYARCIGLLFQVVDDILD 284 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~Lf~~-~~~~ga~lag~~~~~~~--~l~~~g~~lG~afQI~DD~lD 284 (354)
..++.+-..+..|. +..++.++|..+...-+|..+-+ .+..+.- -...++..+ .+.++-+..+...-+.||+..
T Consensus 187 ~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S 265 (382)
T 3kb9_A 187 HTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCS 265 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665554 23489999998864444443222 2222211 123344332 567778888999999999999
Q ss_pred hcCChhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 037716 285 VTKSSEELGKTAGKDLASGK-ATYPKLM------GIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 285 ~~~~~~~~GK~~g~Dl~~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~ 332 (354)
+..+.+ +|. .+...++ ..+.|.+.+.++++++.+.+.
T Consensus 266 ~~kE~~-----------~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~ 309 (382)
T 3kb9_A 266 LPKEIA-----------GDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL 309 (382)
T ss_dssp HHHHHH-----------TTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----------cCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 864322 232 3555554 356666666666665555443
No 50
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=88.36 E-value=2.2 Score=39.60 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 037716 258 NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE 335 (354)
Q Consensus 258 ~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~ 335 (354)
+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..+|...|--..+-+..+|.+.|..++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~ 131 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG 131 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666677778889999999987 347889999999999988888888888889998888764
No 51
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=86.41 E-value=4.8 Score=38.06 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=46.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037716 252 AVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEEL 331 (354)
Q Consensus 252 a~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 331 (354)
+.+.|.+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..+|...|--.-+-++.+|.+.+
T Consensus 59 ~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 126 (334)
T 3rmg_A 59 ARLYGAVTPATLHAAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHA 126 (334)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 333344555566666677888889999999987 35788999999999988877766677777787777
Q ss_pred hcc
Q 037716 332 AYF 334 (354)
Q Consensus 332 ~~l 334 (354)
...
T Consensus 127 ~~~ 129 (334)
T 3rmg_A 127 EQT 129 (334)
T ss_dssp HHT
T ss_pred HhC
Confidence 654
No 52
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=85.58 E-value=4.2 Score=38.53 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=52.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 249 VCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 249 ~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
.+++.+.|.+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..+|...|--..+-++.+|.
T Consensus 62 l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 129 (341)
T 3mzv_A 62 LAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD------------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSF 129 (341)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHH
Confidence 334444454555566666777778889999999987 35788999999999988888777777888888
Q ss_pred HHhhccC
Q 037716 329 EELAYFE 335 (354)
Q Consensus 329 ~~L~~l~ 335 (354)
+.+....
T Consensus 130 ~~l~~~~ 136 (341)
T 3mzv_A 130 QLMTDTG 136 (341)
T ss_dssp HHHGGGC
T ss_pred HHHHhCC
Confidence 8887653
No 53
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=84.17 E-value=3.8 Score=39.22 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=45.0
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 250 ~ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
+++.+.| .+.+.+..+...-+.|=.+.-|.||++| .+|+|.|++|+-..+|...|--.-+-++..|.
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 151 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD------------EASMRRGVPSANARWDNSVAILAGDILLAHAS 151 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC------------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHH
Confidence 3444555 4555555666677778888999999987 35788999999999887777666667777777
Q ss_pred HHhhccC
Q 037716 329 EELAYFE 335 (354)
Q Consensus 329 ~~L~~l~ 335 (354)
+.|..++
T Consensus 152 ~~l~~~~ 158 (360)
T 3lmd_A 152 GLMSQLG 158 (360)
T ss_dssp HHHHHHC
T ss_pred HHHHHCC
Confidence 7776654
No 54
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=83.29 E-value=4 Score=38.94 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 249 VCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 249 ~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
.+++.+.|.+.+....+...-+.|=.+.-|.||++| .+|+|.|++|+-..+|...|--..+-+...|.
T Consensus 63 ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 130 (352)
T 3nf2_A 63 VLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD------------GDEQRRHRDTVWKVHGPAQAILVGDALFALAN 130 (352)
T ss_dssp HHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHH
Confidence 344445555656566666777778888999999988 34788999999999998888877888888888
Q ss_pred HHhhccCC
Q 037716 329 EELAYFEA 336 (354)
Q Consensus 329 ~~L~~l~~ 336 (354)
+.|..++.
T Consensus 131 ~~l~~~~~ 138 (352)
T 3nf2_A 131 EVLLELGT 138 (352)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCCC
Confidence 88887743
No 55
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=83.13 E-value=5.9 Score=36.56 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 037716 256 GGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 256 g~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 333 (354)
|.+++....+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-++.+|.+.|..
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~ 129 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX 129 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666667777788899999 88 3478899999999999888888888888889888887
Q ss_pred cC
Q 037716 334 FE 335 (354)
Q Consensus 334 l~ 335 (354)
.+
T Consensus 130 ~~ 131 (284)
T 2ftz_A 130 IG 131 (284)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 56
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=83.04 E-value=6.4 Score=36.58 Aligned_cols=73 Identities=22% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQA 327 (354)
Q Consensus 250 ~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 327 (354)
+++.+.|.+.+....+...-+.|=.+.=|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|
T Consensus 51 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 118 (297)
T 3m0g_A 51 ESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD------------NDDLRRGLPTVHKKWDDATAVLAGDALQTLA 118 (297)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCccCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 334445666776777777777888899999999 66 3478899999999999888887888888899
Q ss_pred HHHhhcc
Q 037716 328 IEELAYF 334 (354)
Q Consensus 328 ~~~L~~l 334 (354)
.+.|...
T Consensus 119 ~~~l~~~ 125 (297)
T 3m0g_A 119 FELCTDP 125 (297)
T ss_dssp HHHTTCG
T ss_pred HHHHHHh
Confidence 9988876
No 57
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=82.96 E-value=7.2 Score=36.81 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=56.0
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGG-GNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329 (354)
Q Consensus 251 ga~lag-~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 329 (354)
++.+++ .+.+....+...-+.+=.+.=|.||++| .+|+|.|++|+-..+|...|--...-+...|.+
T Consensus 66 ~~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 133 (334)
T 3pko_A 66 FSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFD 133 (334)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHH
Confidence 333444 4666666777777888889999999988 347889999999999888887777777888888
Q ss_pred Hhhcc
Q 037716 330 ELAYF 334 (354)
Q Consensus 330 ~L~~l 334 (354)
.|...
T Consensus 134 ~l~~~ 138 (334)
T 3pko_A 134 QVLKS 138 (334)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87765
No 58
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=82.59 E-value=5.8 Score=37.21 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=55.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 249 VCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 249 ~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
.+++.+.|.+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..+|...|--...-+...|.
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 120 (325)
T 3aqb_B 53 LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARAL 120 (325)
T ss_dssp HHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCcccccChHHHHHHHHHHHHHHH
Confidence 334444444444455566666677778889999988 34778999999999998888877888888888
Q ss_pred HHhhcc
Q 037716 329 EELAYF 334 (354)
Q Consensus 329 ~~L~~l 334 (354)
+.|...
T Consensus 121 ~~l~~~ 126 (325)
T 3aqb_B 121 QNIATI 126 (325)
T ss_dssp HHTTTC
T ss_pred HHHHhC
Confidence 888775
No 59
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=82.46 E-value=7.8 Score=36.36 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 037716 256 GGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 256 g~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 333 (354)
|.+.+....+...-+.|=.+.=|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|.+.|..
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 128 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMD------------NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSN 128 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSC------------C-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666777788889999999 66 3588999999999999888877778888899999887
Q ss_pred c
Q 037716 334 F 334 (354)
Q Consensus 334 l 334 (354)
.
T Consensus 129 ~ 129 (317)
T 4f62_A 129 P 129 (317)
T ss_dssp T
T ss_pred c
Confidence 6
No 60
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=81.89 E-value=9 Score=35.53 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 037716 256 GGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE 335 (354)
Q Consensus 256 g~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~ 335 (354)
|.+++....+...-+.+=.+.-|.||++| .+|+|.|++|+-..+|...|--...-+...|.+.+...+
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~ 108 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLD 108 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 44555555666677777888899999987 347889999999999988888777888888888887764
No 61
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=81.23 E-value=9.1 Score=35.94 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=54.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329 (354)
Q Consensus 250 ~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 329 (354)
+++.+.|.+++....+...-+.+=.+.=|.||++| .+|+|.|++|+-..+|...|--...-+...|.+
T Consensus 49 ~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 116 (330)
T 1wmw_A 49 YSALAHGAPLEAGLEAATALELFQNWVLVHDDIED------------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWG 116 (330)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCCccccccCchHHHHHHHHHHHHHHH
Confidence 33344455666555666677777788999999987 347889999999998888777777777777777
Q ss_pred Hhhcc
Q 037716 330 ELAYF 334 (354)
Q Consensus 330 ~L~~l 334 (354)
.|..+
T Consensus 117 ~l~~~ 121 (330)
T 1wmw_A 117 LLAEG 121 (330)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 62
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=81.00 E-value=6.8 Score=36.20 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=53.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 251 ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
++.+.|.+++....+...-+.+=.+.=|.||++| .+|+|.|++|+-..+|...|--.-+-+...|.+.
T Consensus 60 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 127 (289)
T 2azj_A 60 FTVALGGDIKDSYGGALAIEILHSASLALCDIVD------------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRI 127 (289)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3334444544445556666667778889999987 3478899999999998888777777777888888
Q ss_pred h-hccC
Q 037716 331 L-AYFE 335 (354)
Q Consensus 331 L-~~l~ 335 (354)
| ...+
T Consensus 128 l~~~~~ 133 (289)
T 2azj_A 128 IQTSYG 133 (289)
T ss_dssp HHHHHC
T ss_pred HHhcCc
Confidence 7 6653
No 63
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=80.79 E-value=35 Score=31.41 Aligned_cols=111 Identities=10% Similarity=0.011 Sum_probs=63.1
Q ss_pred hhhhhhhhhhhhccCCC--C-CHHHHHHHHHhchHHHHHHH-HHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHhhh
Q 037716 210 EGLVAGEFVDIASEGKD--V-SLKELEYIHVHKTAKLLEAA-VVCGAVIGGGNAIEVE--RVRNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~~~--~-~~~~~~~i~~~KTg~Lf~~~-~~~ga~lag~~~~~~~--~l~~~g~~lG~afQI~DD~l 283 (354)
..++.+-..+..|.... + +.++|..+...-.|..+..+ +.++.- -..+++..+ .+.++-+..+...-+.||+.
T Consensus 144 ~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~ 222 (337)
T 1ps1_A 144 RNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGR-FEVPHRVFDSAVMSAMLQIAVDVNLLLNDIA 222 (337)
T ss_dssp HHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666664432 7 89999887544444432222 222211 112344332 55678888889999999999
Q ss_pred hhcCChhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 037716 284 DVTKSSEELGKTAGKDLASGK-ATYPKLM------GIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~ 332 (354)
.+..+. .+|. .+...++ ..+.|.+.+.++++++.+.+.
T Consensus 223 S~~kE~-----------~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~ 267 (337)
T 1ps1_A 223 SLEKEE-----------ARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYL 267 (337)
T ss_dssp THHHHH-----------HTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-----------hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 985432 2233 4555555 456677777777666666544
No 64
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=80.70 E-value=7.5 Score=36.09 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 258 NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 258 ~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
+++....+...-+.+=.+.=|.||++| .+|+|.|++|+-..+|...|--.-+-+...|.+.|...
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444555566667777889999988 34788999999999988877766677777777777765
No 65
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=80.01 E-value=5.7 Score=37.52 Aligned_cols=70 Identities=24% Similarity=0.225 Sum_probs=53.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 037716 253 VIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 253 ~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~ 332 (354)
.+.|.+++....+...-+.+=.+.-|.||++| .+|+|.|++|+-..+|...|--..+-+...|.+.|.
T Consensus 59 ~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 126 (342)
T 1wy0_A 59 EAVGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVA 126 (342)
T ss_dssp TTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHH
Confidence 33344444445566666677778899999988 347889999999999988888788888888888888
Q ss_pred cc
Q 037716 333 YF 334 (354)
Q Consensus 333 ~l 334 (354)
..
T Consensus 127 ~~ 128 (342)
T 1wy0_A 127 RA 128 (342)
T ss_dssp TC
T ss_pred Hc
Confidence 76
No 66
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=79.24 E-value=45 Score=31.81 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=58.0
Q ss_pred HhCCCccchHHHH---HHHHHHhCCCchhhhhHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCccccc--ChHHHHHHH
Q 037716 99 LLAGGKRVRPLLC---IASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVF--GESTAILAG 173 (354)
Q Consensus 99 ~~~gGKrlRp~l~---ll~~~~~g~~~~~~~~lA~avEliH~asLIhDDI~viD~s~~RRG~pt~h~~~--G~~~AIl~G 173 (354)
+...+|++.|.+- .++++.+-.-......+ +=...++..+.||+ .|++... ....+..+ |... +
T Consensus 56 l~~~~~~l~~~~~t~~~laar~YP~a~~e~l~l---iad~~~~~F~lDD~--~d~~~~~--l~~~~~~ll~G~~~----~ 124 (374)
T 1yyq_A 56 LKVDPKRLQASLQTIVGMVVYSWAKVSKECMAD---LSIHYTYTLVLDDS--KDDPYPT--MVNYFDDLQAGREQ----A 124 (374)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHSTTSCHHHHHH---HHHHHHHHHHHTTC--CSCSHHH--HTTHHHHHHHTCCC----S
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHHHHhhccc--ccCcHHH--HHHHHHHHhcCCCC----C
Confidence 3345677776552 34555554332222222 22667778889997 5764211 11111111 1100 0
Q ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHhchHHH
Q 037716 174 DALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKL 243 (354)
Q Consensus 174 D~Ll~~a~~~l~~~~~~~~~~~~~~~i~~l~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~i~~~KTg~L 243 (354)
+-++..-..++.++....++....+++..+ .+...|..++....+..++.++|..+.+.+||..
T Consensus 125 ~Pl~~al~dl~~rl~~~~~p~~~~rf~~s~------~~~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~~ 188 (374)
T 1yyq_A 125 HPWWALVNEHFPNVLRHFGPFCSLNLIRST------LDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGLG 188 (374)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHHH------HHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHCH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHHHHHHHHHHhccCCCCCHHHHHHHHHhhccHH
Confidence 111211223333333344443322332222 3444555555333222366777877678899863
No 67
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=78.82 E-value=11 Score=35.43 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 037716 256 GGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE 335 (354)
Q Consensus 256 g~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~ 335 (354)
|.+++.+..+...-+.+=.+.=|.||+.| .+|+|.|++|+-..+|...|--..+-+...|.+.|..+.
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 123 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLT 123 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44555555566666677778889999987 347889999999999988888888888889999888774
Q ss_pred C
Q 037716 336 A 336 (354)
Q Consensus 336 ~ 336 (354)
.
T Consensus 124 ~ 124 (340)
T 2e8v_A 124 T 124 (340)
T ss_dssp C
T ss_pred C
Confidence 3
No 68
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=77.19 E-value=17 Score=33.51 Aligned_cols=72 Identities=22% Similarity=0.197 Sum_probs=54.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 251 ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
++.+.|.+++....+...-+.+=.+.=|.||+ +| .+|+|.|++|+-..+|...|--.-+-++..|.
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D------------~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~ 122 (299)
T 1rqj_A 55 TGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD------------DDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc------------CCCCCCCCCChhhhcChHHHHHHHHHHHHHHH
Confidence 34444556655555666666677788899999 88 34788999999999998887777777888888
Q ss_pred HHhhcc
Q 037716 329 EELAYF 334 (354)
Q Consensus 329 ~~L~~l 334 (354)
+.|...
T Consensus 123 ~~l~~~ 128 (299)
T 1rqj_A 123 SILSDA 128 (299)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 888764
No 69
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=76.11 E-value=10 Score=35.28 Aligned_cols=73 Identities=22% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 251 ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
++.+.|.+++....+...-+.|=.+.=|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|.
T Consensus 55 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~ 122 (304)
T 3lsn_A 55 ACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMD------------DDDLRRGQPTTHKAFDEACAILAGDGLQSLAF 122 (304)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCccCCCCchHhhcCHHHHHHHHHHHHHHHH
Confidence 33444555555666666777788889999999 66 34788999999999998888877788888999
Q ss_pred HHhhccC
Q 037716 329 EELAYFE 335 (354)
Q Consensus 329 ~~L~~l~ 335 (354)
+.|....
T Consensus 123 ~~l~~~~ 129 (304)
T 3lsn_A 123 SALLDPA 129 (304)
T ss_dssp HHHHCTT
T ss_pred HHHHHhc
Confidence 9988763
No 70
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=75.88 E-value=6.3 Score=37.59 Aligned_cols=63 Identities=19% Similarity=0.053 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 037716 258 NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 258 ~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~ 332 (354)
+.+....+...-+.|=.+.-|.||+.| .+|+|.|++|+-..+|...|--...-+...|.+.|.
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 125 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVL 125 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666778888999999987 347789999999999988888888888888888884
No 71
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=74.46 E-value=15 Score=34.24 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQA 327 (354)
Q Consensus 250 ~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 327 (354)
+++.+.|.+.+....+...-+.|=.+.=|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|
T Consensus 60 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 127 (313)
T 3lom_A 60 LAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD------------NDDLRRGKPSCHKAFDEATAILVGDGMQALA 127 (313)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCccccc------------CCCccCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 334445666776667777777888889999999 66 3478899999999998887776777777788
Q ss_pred HHHhhcc
Q 037716 328 IEELAYF 334 (354)
Q Consensus 328 ~~~L~~l 334 (354)
.+.|...
T Consensus 128 ~~~l~~~ 134 (313)
T 3lom_A 128 IEVLLMR 134 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8777764
No 72
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=74.37 E-value=49 Score=29.71 Aligned_cols=100 Identities=17% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHhchHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhh-cC-
Q 037716 227 VSLKELEYIHVHKTAKLLEAA-VVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA-SG- 303 (354)
Q Consensus 227 ~~~~~~~~i~~~KTg~Lf~~~-~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~-~g- 303 (354)
++.++|..+...-+|..+... +..+. --..+++..+.+.++-+..+...-+.||+..+..+.+. |+ +.. .|
T Consensus 152 Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~-g~----~~h~~~~ 225 (300)
T 1di1_A 152 HELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEA-SR----TGHKEGA 225 (300)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC--------------
T ss_pred CCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hc----ccccccc
Confidence 899999988655555443322 22222 11246777777888999999999999999998654321 21 000 01
Q ss_pred -CCcHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 037716 304 -KATYPKLM------GIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 304 -k~T~p~l~------~le~a~~~~~~~~~~A~~~L~ 332 (354)
..+...++ ..+.|.+.+.++++++.+.+.
T Consensus 226 ~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~ 261 (300)
T 1di1_A 226 FLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHD 261 (300)
T ss_dssp -CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33555554 356666666666666655443
No 73
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=74.34 E-value=9.6 Score=35.86 Aligned_cols=71 Identities=24% Similarity=0.132 Sum_probs=55.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 253 VIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 253 ~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
.+.|.+.+....+...-+.|=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|.+.
T Consensus 63 ~~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~ 130 (324)
T 3ts7_A 63 QTIGVAADLLDGPACAVEFIHVYSLIHDDLPAMD------------DDDLRRGKPTCHKAYDEATAILAGDGLQALAFHV 130 (324)
T ss_dssp HHHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhhcCccccc------------CCCccCCCCchhhhcChHHHHHHHHHHHHHHHHH
Confidence 333445555566666777788889999999 77 3478899999999999888887788888889888
Q ss_pred hhccC
Q 037716 331 LAYFE 335 (354)
Q Consensus 331 L~~l~ 335 (354)
|....
T Consensus 131 l~~~~ 135 (324)
T 3ts7_A 131 LAQDP 135 (324)
T ss_dssp HHHCT
T ss_pred HHhcc
Confidence 88763
No 74
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=74.30 E-value=3 Score=38.77 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 258 NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 258 ~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
+.+....+...-+.+=.+.-|.||++| .+|+|.|++|+-..+|...|--.-+-+..+|.+.+...
T Consensus 60 ~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~ 124 (295)
T 3ipi_A 60 SYSRSLNAALAVEMMHSASLIHDDLLD------------QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY 124 (295)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHH------------HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcCcC------------CCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc
Confidence 344455566667778888999999987 34778888888777766655555555566666665544
No 75
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=74.03 E-value=15 Score=34.14 Aligned_cols=62 Identities=27% Similarity=0.270 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 261 EVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 261 ~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
....+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|.+.|...
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 135 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMD------------DDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhcc------------CCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666677788899999999 87 35788999999999998888877788888888888764
No 76
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=73.39 E-value=22 Score=32.69 Aligned_cols=70 Identities=29% Similarity=0.289 Sum_probs=50.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 253 VIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 253 ~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
.+.|.+++....+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-++..|.+.
T Consensus 65 ~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 132 (293)
T 2j1p_A 65 ELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD------------NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEH 132 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 334445555555556666677778899998 77 3478899999999998877776667777777777
Q ss_pred hhcc
Q 037716 331 LAYF 334 (354)
Q Consensus 331 L~~l 334 (354)
+...
T Consensus 133 l~~~ 136 (293)
T 2j1p_A 133 LASA 136 (293)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 77
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=73.19 E-value=16 Score=33.89 Aligned_cols=70 Identities=21% Similarity=0.074 Sum_probs=52.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 253 VIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 253 ~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
.+.|.+++..-.+...-+.|=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-++.+|.+.
T Consensus 55 ~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 122 (301)
T 1rtr_A 55 DSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD------------NDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 122 (301)
T ss_dssp HHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc------------CCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 333444444444556666677788899999 77 3478899999999999888887778888888888
Q ss_pred hhcc
Q 037716 331 LAYF 334 (354)
Q Consensus 331 L~~l 334 (354)
|...
T Consensus 123 l~~~ 126 (301)
T 1rtr_A 123 ISSD 126 (301)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8765
No 78
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=72.90 E-value=16 Score=34.00 Aligned_cols=67 Identities=21% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCCHHHH--HHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHh
Q 037716 256 GGNAIEV--ERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEEL 331 (354)
Q Consensus 256 g~~~~~~--~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 331 (354)
|.+.+.. ..+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..+|...|--..+-+...|.+.|
T Consensus 64 g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 131 (309)
T 3pde_A 64 GVTFVPERHWRPVMALELLHTYSLIHDDLPAMD------------NDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWL 131 (309)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhHhHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHH
Confidence 3343444 45566667777889999999 88 35788999999999999888888888888999988
Q ss_pred hcc
Q 037716 332 AYF 334 (354)
Q Consensus 332 ~~l 334 (354)
...
T Consensus 132 ~~~ 134 (309)
T 3pde_A 132 TAT 134 (309)
T ss_dssp TSS
T ss_pred Hhc
Confidence 875
No 79
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=72.67 E-value=6.5 Score=37.32 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 249 VCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 249 ~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
.+++.+.|.+.+....+...-+.|=.+.-|.||+.| .+|+|.|++|+-..+|...|--.-+-++.+|.
T Consensus 74 ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~ 141 (345)
T 3oyr_A 74 VAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD------------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAF 141 (345)
T ss_dssp HHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC---------------------CCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC------------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHH
Confidence 334444454555555666677778889999999987 34778888888777777766666666677777
Q ss_pred HHhhcc
Q 037716 329 EELAYF 334 (354)
Q Consensus 329 ~~L~~l 334 (354)
+.+...
T Consensus 142 ~~l~~~ 147 (345)
T 3oyr_A 142 ELMVET 147 (345)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 777654
No 80
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=71.64 E-value=8.5 Score=35.99 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 037716 260 IEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 260 ~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 333 (354)
+....+...-+.|=.+.=|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|.+.|..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 137 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD------------NAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN 137 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC------------CCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555566677788999999 77 3578899999999998877776667777788887776
No 81
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=70.54 E-value=45 Score=33.62 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=68.3
Q ss_pred hhhhhhhhhhhhccC--CCCCHHHHHHHHHhchHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Q 037716 210 EGLVAGEFVDIASEG--KDVSLKELEYIHVHKTAKLL-EAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDI 282 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~~--~~~~~~~~~~i~~~KTg~Lf-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~ 282 (354)
..++.+-..+..|.. ..|+.++|.....--+|..+ ...+.+| ++. .+++..+.+ .++-+..+...-+.||+
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~--mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI 453 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVG--MGDIVTPETFKWAASDPKIIQASTIICRFMDDV 453 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHT--SCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHh--cCCCCCHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 345555555556643 33899999888644444432 2222221 122 356655554 47888899999999999
Q ss_pred hhhcCChhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 283 LDVTKSSEELGKTAGKDLASGKA-TYPKLM------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 283 lD~~~~~~~~GK~~g~Dl~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
..+..+.+ +|.. +...+| ..|.|.+.+++.++++++.|..
T Consensus 454 ~S~k~E~~-----------rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 500 (554)
T 3g4d_A 454 AEHKFKHR-----------REDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQ 500 (554)
T ss_dssp HHHCC-----------------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhc-----------cCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99865432 2333 555544 4678889999999999887764
No 82
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=70.08 E-value=29 Score=32.63 Aligned_cols=72 Identities=25% Similarity=0.267 Sum_probs=54.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328 (354)
Q Consensus 251 ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 328 (354)
++.+.|.+++....+...-+.|=.+.-|.||+ +| ..|+|.|++|+-..+|...|--.-+-++..|.
T Consensus 96 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 163 (335)
T 2h8o_A 96 SVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMD------------DDDLRRGQPTVHRKFDEATAILAGDSLLTLAF 163 (335)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCcCCCCCcHhhhcChHHHHHHHHHHHHHHH
Confidence 33444556655555666666777788899999 87 34788999999999998888777778888888
Q ss_pred HHhhcc
Q 037716 329 EELAYF 334 (354)
Q Consensus 329 ~~L~~l 334 (354)
+.|...
T Consensus 164 ~~l~~~ 169 (335)
T 2h8o_A 164 DIIASD 169 (335)
T ss_dssp HHHHST
T ss_pred HHHHHh
Confidence 888875
No 83
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=69.07 E-value=58 Score=32.86 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=67.9
Q ss_pred hhhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 037716 211 GLVAGEFVDIASE--GKDVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 211 ~~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~l 283 (354)
.++.+-..+..|. +..|+.++|.....--+|.- +...+.+|+ +. .+++..+.+ -++-+..+...-+.||+.
T Consensus 375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 452 (555)
T 3n0f_A 375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLA 452 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccch
Confidence 3444545555554 33489999988764444432 222222221 32 355655543 467788888889999999
Q ss_pred hhcCChhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 284 DVTKSSEELGKTAGKDLASGKA-TYPKLM------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
.+..+. .+|.. +...+| ..|.|.+.+++.++++++.|..
T Consensus 453 S~~~E~-----------~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 453 SASAEI-----------ARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHHH-----------TTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhh-----------hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 985322 23444 555554 4678888899999999887754
No 84
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=68.61 E-value=8.3 Score=35.84 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHH
Q 037716 249 VCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQ 326 (354)
Q Consensus 249 ~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~ 326 (354)
.+.+.+.|.+++....+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..+|...|--..+-+...
T Consensus 59 l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~ 126 (302)
T 3p8r_A 59 YITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMD------------DDELRRGKPTCHIQFDEATAILTGDALQTL 126 (302)
T ss_dssp HHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHH------------CCC--------------HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCcCCCCcchhhhcCHHHHHHHHHHHHHH
Confidence 3344445556666666666777788899999999 77 347889999999999888777777777788
Q ss_pred HHHHhhcc
Q 037716 327 AIEELAYF 334 (354)
Q Consensus 327 A~~~L~~l 334 (354)
|.+.|...
T Consensus 127 a~~~l~~~ 134 (302)
T 3p8r_A 127 AFTILAEG 134 (302)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 88888765
No 85
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=67.17 E-value=32 Score=31.69 Aligned_cols=64 Identities=20% Similarity=0.101 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 259 AIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 259 ~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
.+....+...-+.+=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-+...|.+.|...
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 124 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD------------NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA 124 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666677788889999999 76 34788999999999988888777777888888888764
No 86
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=67.03 E-value=16 Score=34.78 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 265 VRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 265 l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
+...-+.+=.++=|.||++| .+|+|.|++|+-..+|...|--...-+...|.+.+..+
T Consensus 100 la~aiEliH~asLiHDDimD------------~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~ 157 (368)
T 2q58_A 100 LGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFEL 157 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhccc------------CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 33333556667788999987 35889999999998887776665566666666666543
No 87
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=66.98 E-value=87 Score=31.49 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=68.8
Q ss_pred hhhhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHHHHH-HHHHHHHhcCCCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 037716 210 EGLVAGEFVDIASE--GKDVSLKELEYIHVHKTAKLLEA-AVVCGAVIGGGNAIEVERV---RNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~Lf~~-~~~~ga~lag~~~~~~~~l---~~~g~~lG~afQI~DD~l 283 (354)
..++.+-..+..|. +..|+.++|.....--+|..+-. .+.+|. -..+.+..+.+ -++-+..+...-+.||+.
T Consensus 372 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~--~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~ 449 (550)
T 3m00_A 372 KEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM--KSATEQDFEWLSKNPKILEASVIICRVIDDTA 449 (550)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC--CCCcHHHHHhhcccHHHHHHHhhhheeeccch
Confidence 34445555555553 33489999988865444443221 122221 12455555543 467888899999999999
Q ss_pred hhcCChhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 284 DVTKSSEELGKTAGKDLASGKA-TYPKLM------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
.+..+. .+|.. +...+| ..|.|.+.+++.++++++.|..
T Consensus 450 S~k~E~-----------~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 495 (550)
T 3m00_A 450 TYEVEK-----------SRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINE 495 (550)
T ss_dssp SHHHHH-----------HTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-----------hcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 975332 23444 555554 4678888899999999887753
No 88
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=66.86 E-value=9.8 Score=35.79 Aligned_cols=72 Identities=24% Similarity=0.196 Sum_probs=50.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhh--hhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDI--LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQA 327 (354)
Q Consensus 250 ~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~--lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 327 (354)
+++.+.|.+.+....+...-+.|=.+.-|.||+ +| .+|+|.|++|+-..+|...|--.-+-++.+|
T Consensus 84 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A 151 (324)
T 3uca_A 84 LSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMD------------NDDLRRGKPTNHKVFGEAIAVLAGDALLNEA 151 (324)
T ss_dssp HHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHH
Confidence 344444556555556666677788889999999 88 3478899999998887666655555555666
Q ss_pred HHHhhc
Q 037716 328 IEELAY 333 (354)
Q Consensus 328 ~~~L~~ 333 (354)
.+.|..
T Consensus 152 ~~~l~~ 157 (324)
T 3uca_A 152 MKILVD 157 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655554
No 89
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=65.19 E-value=81 Score=28.58 Aligned_cols=60 Identities=23% Similarity=0.131 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhchHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 037716 227 VSLKELEYIHVHKTAKLLEAA-VVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTK 287 (354)
Q Consensus 227 ~~~~~~~~i~~~KTg~Lf~~~-~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~ 287 (354)
++.++|..+...-+|..+... +..+. --..+++..+...++-+..+...-+.||+..+..
T Consensus 166 Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 899999988766666543322 22222 1124677777788899999999999999999854
No 90
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=64.10 E-value=36 Score=33.14 Aligned_cols=76 Identities=17% Similarity=0.034 Sum_probs=44.0
Q ss_pred hhhhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHHHH--HHHHHHHHHHHHHHHHHhhhh
Q 037716 210 EGLVAGEFVDIASE--GKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIEVE--RVRNYARCIGLLFQVVDDILD 284 (354)
Q Consensus 210 ~~~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~~~--~l~~~g~~lG~afQI~DD~lD 284 (354)
..++.+-..+..|. +..++.++|..+. ..||...-+.+ +....+. ..++..+ .+.++-+..+...-+.||+..
T Consensus 265 ~~~~~a~l~EA~W~~~g~vPsleEYl~~R-~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~S 342 (433)
T 3v1v_A 265 ARLHLGYLAEGAWAQTGHVPEVWEYLAMR-QFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYS 342 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHH
Confidence 34445555555543 2348999998874 45544211111 1111222 2344443 566778888889999999999
Q ss_pred hcC
Q 037716 285 VTK 287 (354)
Q Consensus 285 ~~~ 287 (354)
+..
T Consensus 343 y~k 345 (433)
T 3v1v_A 343 YTK 345 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 91
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=63.50 E-value=12 Score=34.15 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=53.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 037716 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEE 330 (354)
Q Consensus 251 ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 330 (354)
++.+.|.+.+....+...-+.+=.+.-|.||+..-- +|.|.|++|+-..+|...|--..+-+...|.+.
T Consensus 51 ~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~dD-----------~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 51 ACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLTD-----------GSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCSS-----------SSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCcccC-----------CccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 334445566666666677777888999999998211 244678888888888777777777788888888
Q ss_pred hhccC
Q 037716 331 LAYFE 335 (354)
Q Consensus 331 L~~l~ 335 (354)
|....
T Consensus 120 l~~~~ 124 (274)
T 3kra_B 120 LAGSV 124 (274)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87763
No 92
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=62.91 E-value=20 Score=33.46 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q 037716 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFE 335 (354)
Q Consensus 264 ~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l~ 335 (354)
.+...-+.+=.+.-|.||++| .+|+|.|++|+-..+|...|--..+-+...|.+.|..++
T Consensus 61 ~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 120 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID------------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----------------------------CCSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCC------------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 445555667778899999977 347788999998888777676666777777777777654
No 93
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=62.83 E-value=35 Score=32.04 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Q 037716 265 VRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 265 l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~l 334 (354)
+...-+.+=.+.-|.||++| .+|+|.|++|+-..+|...|--..+-+...|.+.|..+
T Consensus 92 ~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 149 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD------------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAAL 149 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccC------------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhC
Confidence 34444555567789999987 35788999999888888777777777777777777665
No 94
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=62.37 E-value=27 Score=33.44 Aligned_cols=64 Identities=20% Similarity=0.106 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHH----------------hHHHHHHHHHH
Q 037716 259 AIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM----------------GIENAKSFAGE 322 (354)
Q Consensus 259 ~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~----------------~le~a~~~~~~ 322 (354)
.+.+..+...-+.|=.+.=|.||++| .+|+|.|++|+-..+ |...|--.-+-
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD------------~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~ 154 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID------------SSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDM 154 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C-----------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC------------CCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHH
Confidence 55555666666777788899999987 357889999998874 66666666667
Q ss_pred HHHHHHHHhhcc
Q 037716 323 LLGQAIEELAYF 334 (354)
Q Consensus 323 ~~~~A~~~L~~l 334 (354)
++..|.+.+...
T Consensus 155 Ll~~A~~~l~~~ 166 (380)
T 3lk5_A 155 ALVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHc
Confidence 777777777764
No 95
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=55.99 E-value=21 Score=32.53 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=48.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 037716 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329 (354)
Q Consensus 250 ~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 329 (354)
+++.+.|.+.+....+...-+.+=.+.-|.||+.|- | + +.|++|+-..+|...|--.-+-+...|.+
T Consensus 55 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~--d----------~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 121 (273)
T 3qkc_B 55 AACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT--D----------G-PMSKSEIQHKFDPNIELLTGDGIIPFGLE 121 (273)
T ss_dssp HHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT--T----------B-CSSSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC--c----------c-CCCCCCchhhcCHHHHHHHHHHHHHHHHH
Confidence 334444556666666777777888899999999874 1 2 45666666666666666555666677777
Q ss_pred Hhhcc
Q 037716 330 ELAYF 334 (354)
Q Consensus 330 ~L~~l 334 (354)
.|...
T Consensus 122 ~l~~~ 126 (273)
T 3qkc_B 122 LMARS 126 (273)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 76654
No 96
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=50.55 E-value=2e+02 Score=28.62 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=64.7
Q ss_pred hhhhhhhhhhccC--CCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 037716 212 LVAGEFVDIASEG--KDVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDILD 284 (354)
Q Consensus 212 ~~~GQ~lDl~~~~--~~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~lD 284 (354)
++.+-..+..|.. ..|+.++|......-+|.. +......| ++. .+++..+.+ -++-+..+...-+.||+..
T Consensus 367 l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 444 (543)
T 2ong_A 367 LADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR--VTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGT 444 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH--HSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccch
Confidence 3344444444433 3389999988754333332 22222222 233 345544443 4677777888889999988
Q ss_pred hcCChhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 285 VTKSSEELGKTAGKDLASGKA-TYPKLM------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 285 ~~~~~~~~GK~~g~Dl~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
+..+. ..|.. +...+| ..|.|.+.+.+.++++++.+..
T Consensus 445 ~~~E~-----------~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 445 SVEEV-----------SRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp SHHHH-----------HTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcc-----------ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 75332 23343 555554 3677888888999999988876
No 97
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=49.06 E-value=44 Score=32.11 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHH--HHHHHHHHHHHHHHHhhc
Q 037716 267 NYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIEN--AKSFAGELLGQAIEELAY 333 (354)
Q Consensus 267 ~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~--a~~~~~~~~~~A~~~L~~ 333 (354)
..-+-|=.++=|.||++| .+|+|.|++||-..++... |-....-+...|.+.|..
T Consensus 112 ~aiEliH~asLIHDDImD------------~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~ 168 (395)
T 2ihi_A 112 WCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEI 168 (395)
T ss_dssp HHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc------------CCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678899999987 3477888988876665544 333333444556666654
No 98
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=48.71 E-value=28 Score=33.26 Aligned_cols=62 Identities=23% Similarity=0.143 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHHHHHHHHHH---HHHHHHhhc
Q 037716 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELL---GQAIEELAY 333 (354)
Q Consensus 260 ~~~~~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~---~~A~~~L~~ 333 (354)
+....+...-+-+=.++=|.||++| .+|+|.|++|+-..+|...|--...-+. ..|.+.|..
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~ 159 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSS 159 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566667788999999988 3578899999988887766655555555 555555543
No 99
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=41.79 E-value=1e+02 Score=30.83 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=59.0
Q ss_pred hhhhhhhhhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHhcC-CCHHH-HHH---HHHHHHHHHHHHHHHHhhhhh
Q 037716 213 VAGEFVDIASE--GKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGG-GNAIE-VER---VRNYARCIGLLFQVVDDILDV 285 (354)
Q Consensus 213 ~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~Lf~~~~~~ga~lag-~~~~~-~~~---l~~~g~~lG~afQI~DD~lD~ 285 (354)
+.+-..+..|. +..|+.++|......-+|.-.-. +..-..++. .+++. .+. ..++-+..+...-+.||+..+
T Consensus 374 ~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~-~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~ 452 (549)
T 1n1b_A 374 VEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII-SPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTS 452 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH-HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH-HHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchh
Confidence 33434444443 23389999988753333332111 111111222 23444 333 346777888888999999988
Q ss_pred cCChhhhCCccchhhhcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 286 TKSSEELGKTAGKDLASGKA-TYPKLM------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 286 ~~~~~~~GK~~g~Dl~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
..+.+ .|.. +...+| ..|.|.+.+++.++++++.+..
T Consensus 453 ~~E~~-----------rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 453 YFELA-----------RGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp ------------------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhc-----------cCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 64332 3443 665555 4677888899999999986654
No 100
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=36.14 E-value=2e+02 Score=30.07 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=65.0
Q ss_pred hhhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 037716 211 GLVAGEFVDIASE--GKDVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDIL 283 (354)
Q Consensus 211 ~~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~l 283 (354)
.++.+-..+..|. +..++.++|.....--+|.- +...+..+ ++. .+++..+.. .++-+..+...-+.||+.
T Consensus 577 ~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~ 654 (764)
T 3p5p_A 577 LYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTK 654 (764)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhccc
Confidence 3344444444443 33489999988754333332 22222221 232 345555544 467888888999999999
Q ss_pred hhcCChhhhCCccchhhhcCCC-cHHHHH-------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 284 DVTKSSEELGKTAGKDLASGKA-TYPKLM-------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 284 D~~~~~~~~GK~~g~Dl~~gk~-T~p~l~-------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
.+..+. .+|.. +...+| ..|.|.+.+++.++++++.|..
T Consensus 655 S~k~E~-----------~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 701 (764)
T 3p5p_A 655 TYQAEK-----------ARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASF 701 (764)
T ss_dssp HHHHHH-----------TTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHH-----------hcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 985432 23333 444444 3567788888888999887764
No 101
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=33.40 E-value=1.8e+02 Score=30.60 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=62.7
Q ss_pred hhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 037716 212 LVAGEFVDIASE--GKDVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDILD 284 (354)
Q Consensus 212 ~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~lD 284 (354)
++.+-..+..|. +..++.++|.....--+|.- +...+..+ ++. .+++..+.. .++-+..+...-+.||+..
T Consensus 609 l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 686 (785)
T 3s9v_A 609 QLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALF--TGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKT 686 (785)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTC--SSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHH--cCCCCCHHHHhcccccHHHHHHHHHHHHHhcccch
Confidence 344444444443 33489999988753333332 12222111 122 345555433 4677888888889999999
Q ss_pred hcCChhhhCCccchhhhcCCC-cHHHHH-------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 285 VTKSSEELGKTAGKDLASGKA-TYPKLM-------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 285 ~~~~~~~~GK~~g~Dl~~gk~-T~p~l~-------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
+..+.+ +|.. +...+| ..|.|.+.+++.++++++.|..
T Consensus 687 ~k~E~~-----------rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 732 (785)
T 3s9v_A 687 YQAERG-----------QGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNR 732 (785)
T ss_dssp HHHHHH-----------HSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHh-----------cCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 854322 3333 444444 3567788888888888887754
No 102
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=33.10 E-value=1.5e+02 Score=29.80 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=55.8
Q ss_pred hhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 037716 212 LVAGEFVDIASE--GKDVSLKELEYIHVHKTAKL-LEAAVVCGAVIGG-GNAIEVERV---RNYARCIGLLFQVVDDILD 284 (354)
Q Consensus 212 ~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~L-f~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQI~DD~lD 284 (354)
++.+-..+..|. +..|+.++|......-+|.. +...... .++. .+++..+.+ -++-+..+...-+.||+..
T Consensus 394 l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~--~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S 471 (569)
T 2j5c_A 394 LIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFF--RLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGT 471 (569)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHH--HSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHH--HcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccch
Confidence 334444444443 23389999987753333322 2222222 1233 345544443 3577777888889999998
Q ss_pred hcCChhhhCCccchhhhcCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHhh
Q 037716 285 VTKSSEELGKTAGKDLASGK-ATYPKLM------GIENAKSFAGELLGQAIEELA 332 (354)
Q Consensus 285 ~~~~~~~~GK~~g~Dl~~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~ 332 (354)
+..+.+ .|. .+...+| ..|.|.+.+.+.++++++.|.
T Consensus 472 ~~~E~~-----------rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln 515 (569)
T 2j5c_A 472 SLDEVE-----------RGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN 515 (569)
T ss_dssp ---------------------CCHHHHC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-----------cCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 865432 222 2344433 346677777777787777655
No 103
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=31.95 E-value=1.4e+02 Score=31.64 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=63.6
Q ss_pred hhhhhhhhhhhcc--CCCCCHHHHHHHHHhchHHHH--HHHHHHHHHhcC-CCHHHHHHHH-----HHHHHHHHHHHHHH
Q 037716 211 GLVAGEFVDIASE--GKDVSLKELEYIHVHKTAKLL--EAAVVCGAVIGG-GNAIEVERVR-----NYARCIGLLFQVVD 280 (354)
Q Consensus 211 ~~~~GQ~lDl~~~--~~~~~~~~~~~i~~~KTg~Lf--~~~~~~ga~lag-~~~~~~~~l~-----~~g~~lG~afQI~D 280 (354)
.++.+-..+..|. +..++.++|.....--+|.-. ...+..+ ++. .+++..+... ++-+..+...-+.|
T Consensus 636 ~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~N 713 (817)
T 3sdr_A 636 DYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTELNSLISRLAD 713 (817)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHHHHHHHHHHhc
Confidence 3444444444443 333899999887543333321 2222221 222 3556656554 67788888999999
Q ss_pred hhhhhcCChhhhCCccchhhhcCCC-cHHHHH-------hHHHHHHHHHHHHHHHHHHhhc
Q 037716 281 DILDVTKSSEELGKTAGKDLASGKA-TYPKLM-------GIENAKSFAGELLGQAIEELAY 333 (354)
Q Consensus 281 D~lD~~~~~~~~GK~~g~Dl~~gk~-T~p~l~-------~le~a~~~~~~~~~~A~~~L~~ 333 (354)
|+..+..+.+ +|.. +...+| ..|.|.+.+++.++++++.|..
T Consensus 714 Di~S~k~E~~-----------rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~ 763 (817)
T 3sdr_A 714 DTKTYKAEKA-----------RGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTR 763 (817)
T ss_dssp HHHSSCC-----------------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHh-----------cCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865432 2332 444443 3567788888888998887764
No 104
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=31.70 E-value=1.1e+02 Score=29.09 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHH
Q 037716 267 NYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIE 314 (354)
Q Consensus 267 ~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le 314 (354)
..-+.|=.++=|.||++| .+|+|.|++|+-..+|..
T Consensus 111 ~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~ 146 (374)
T 2qis_A 111 WCVELLQAFFLVADDIMD------------SSLTRRGQICWYQKPGVG 146 (374)
T ss_dssp HHHHHHHHHHHHHHHHHT------------TCCEETTEECGGGSTTTG
T ss_pred HHHHHHHHHHHHHccccC------------CCCCCCCCccHHHhcCch
Confidence 444555667889999977 235667777766655433
No 105
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=31.19 E-value=1.1e+02 Score=28.64 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhH--HHHHHHHHHHHHHHHHHhhcc
Q 037716 268 YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGI--ENAKSFAGELLGQAIEELAYF 334 (354)
Q Consensus 268 ~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l--e~a~~~~~~~~~~A~~~L~~l 334 (354)
.-+.+=.+.=|.||++| .+|+|.|++|+-..+|. ..|-....-+...|.+.|...
T Consensus 86 avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~ 142 (362)
T 1yhl_A 86 MIEFLQAHYLVEDDIMD------------GSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHY 142 (362)
T ss_dssp HHHHHHHHHHHHHHHHH------------TCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC------------CCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHh
Confidence 44455567789999988 34778888888888776 345555556667777777664
No 106
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=30.87 E-value=1.3e+02 Score=28.47 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhH
Q 037716 264 RVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGI 313 (354)
Q Consensus 264 ~l~~~g~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l 313 (354)
.+...-+.|=.++=|.||++|= +|+|.|++|+-..+|.
T Consensus 101 ~~A~aiEliH~asLiHDDImD~------------s~~RRG~pt~h~~~g~ 138 (367)
T 1uby_A 101 AVGWCIELFQAASLVADDIMDQ------------SLTRRGQLCWYKKEGV 138 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECGGGSTTT
T ss_pred HHHHHHHHHHHHHHHhCcccCC------------CCCCCCCCChhhccCc
Confidence 3444445556678899999872 3566666666555543
No 107
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=24.82 E-value=69 Score=26.26 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=26.2
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCcccccChHH-HHHHHHHHHHHHHHHHHhh
Q 037716 134 MIHTMSLIHDDLPFLDNDERRRSKPASHEVFGEST-AILAGDALLSLALEHVAVN 187 (354)
Q Consensus 134 liH~asLIhDDI~viD~s~~RRG~pt~h~~~G~~~-AIl~GD~Ll~~a~~~l~~~ 187 (354)
-|-|+--+.||| +++. +. -||+|||+-+.-+.+|+..
T Consensus 53 aIDTsmrv~d~i---~~n~--------------K~riVLaGD~~Sa~fY~lLa~~ 90 (147)
T 3aqb_A 53 AIDTSMRMQDFI---NEDN--------------KDSFVLSTDVLSALFYKYLSQP 90 (147)
T ss_dssp HHHHHHHHGGGC---CTTT--------------HHHHHHHHHHHHHHHHHHTBTT
T ss_pred EeccHHHhhccc---ccCC--------------ccceEeehHHHHHHHHHHHcCh
Confidence 456666777885 3321 22 4599999999999999864
No 108
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=20.64 E-value=2.7e+02 Score=26.38 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHH---HHHHHHHHHHHhhhhhcCChhhhCCccchhhhcCCCcHHHHHhHHHH
Q 037716 258 NAIEVERVRNYA---RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENA 316 (354)
Q Consensus 258 ~~~~~~~l~~~g---~~lG~afQI~DD~lD~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a 316 (354)
+.+..+.+...| +.+=.+.=|.||++| .+|+|.|++|+-..++...|
T Consensus 100 ~~~~~~~~~~~A~aiEliH~asLiHDDImD------------~s~~RRG~pt~h~~~g~~~A 149 (395)
T 3mav_A 100 NSSEWEKAACLAWCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETK 149 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhHHhc------------CCCCCCCchhhhhccchHHH
Confidence 344555554444 344456778999988 35888999999887776544
Done!