RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037716
(354 letters)
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 442 bits (1138), Expect = e-156
Identities = 114/333 (34%), Positives = 171/333 (51%), Gaps = 12/333 (3%)
Query: 29 RAPIFRFKLFSKKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAV----- 83
R+ F + + R A + + FE + A + L +
Sbjct: 8 RSRCCAFGITKRFACIRPAC----QRARMDAQMTNFETRLRENAAKTEALLGHLLSGEAR 63
Query: 84 --VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLI 141
+ P + +AMR+ +L GGKR+RP L I S L+GGD + ALE +H SL+
Sbjct: 64 ADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLV 123
Query: 142 HDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIA 201
HDDLP +D+D+ RR +P H F E+TAILAGD+LL+LA + +A + ++ +R +
Sbjct: 124 HDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVI 183
Query: 202 EMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIE 261
+ A G+ G+ G+ +D+A+E K + + KT LL A GA+I G N E
Sbjct: 184 SLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAE 243
Query: 262 VERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAG 321
+R+R + IGL FQ+ DD+LD+T + +GK GKD A GK T L G A+
Sbjct: 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQ 303
Query: 322 ELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
E + +A E LA + KAA L A +IA R++
Sbjct: 304 EQVAEASELLAPYGE-KAAILIAAARFIAERKS 335
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 440 bits (1134), Expect = e-156
Identities = 130/296 (43%), Positives = 184/296 (62%), Gaps = 4/296 (1%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAV-VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG 119
+++ +V++ L++ + P ++H AMRYSL GGKR+RP+L AS +LVG
Sbjct: 2 VMNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVG 61
Query: 120 GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
S +A ALE IH SLIHDDLP +DNDE RR KP H F E+TAILAGDAL +
Sbjct: 62 DISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTF 121
Query: 180 ALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHK 239
A E ++ N P+ ++ I E+ A G G++ G+ +D++SE K++SL ELE +HVHK
Sbjct: 122 AFELLS-NPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHK 180
Query: 240 TAKLLEAAVVCGAVIGGG-NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298
T L++A+V GA+ G ++ ++ YA IGL FQV DDI+D+T +E LGKT
Sbjct: 181 TGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFS 240
Query: 299 DLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
D + KATYPKL+G++ AK+ L QAI +++ F K+ PL LANYI R +
Sbjct: 241 DAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 440 bits (1134), Expect = e-156
Identities = 123/299 (41%), Positives = 175/299 (58%), Gaps = 5/299 (1%)
Query: 60 PTFPFEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
P ++M E+V +ALD + + P ++H+AMRYS+L GGKR+RPLL A+ +
Sbjct: 5 PERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQT 64
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
+G ACA+E IH SLIHDDLP +D+D+ RR KP H+ + E+TAILAGD L
Sbjct: 65 IGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQ 124
Query: 178 SLALEHVAVN-IAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIH 236
+LA +A + V + + I + A G G+V G+ +D+AS GK + L LE +H
Sbjct: 125 ALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMH 184
Query: 237 VHKTAKLLEAAVVCGAVIGGG-NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
+ KT L+ A+V + G A + +R+ +YA+CIGL FQ+ DDILD ++ LGKT
Sbjct: 185 IRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKT 244
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
GKD K YP L+G+ AK A E+ A+E LA F +A L LA +I RQ+
Sbjct: 245 RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP-EADLLRELARFIIQRQS 302
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 438 bits (1128), Expect = e-155
Identities = 124/295 (42%), Positives = 177/295 (60%), Gaps = 5/295 (1%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQ--PPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
Y +V+ A+ ++++AMRYS++ GGKRVRPLL A+CE +GG
Sbjct: 3 LTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGK 62
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
A AACA+E+IH SL+HDDLP +D+D+ RR +P +H+ F E+ AILAGD L SLA
Sbjct: 63 PEQANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAF 122
Query: 182 EHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKT 240
+ ++ S + +R + + A G G+V G+ +D+ S G + + LEY+H HKT
Sbjct: 123 SALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKT 182
Query: 241 AKLLEAAVVCGAVIGGG-NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
L+EA+V+ GA+ G E++ ++ YA+ IGL FQV DDILDV + LGK G D
Sbjct: 183 GALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGAD 242
Query: 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
+A K TYP L+G+ AK +A EL QA+ L F+A A PL LA YI R++
Sbjct: 243 IARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARYIVERRS 296
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 431 bits (1111), Expect = e-153
Identities = 107/312 (34%), Positives = 178/312 (57%), Gaps = 6/312 (1%)
Query: 46 HAQNSVFESTDIPLPT-FPFEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAG 102
+N F+S T + E+V+++L + ++ +M YS+ G
Sbjct: 14 GTENLYFQSMMKKRKTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG 73
Query: 103 GKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHE 162
GKR+RP+L + S + D + A A+EMIHT SLIHDDLP +DND+ RR KP +H+
Sbjct: 74 GKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHK 133
Query: 163 VFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIAS 222
VFGE+ A+LAGDALL+ A++ + + + ++A + A G +G++ G+ VDI +
Sbjct: 134 VFGEAIAVLAGDALLNEAMKILV-DYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIIN 192
Query: 223 EGK-DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDD 281
E K ++SLKEL+Y+H+ KT +L++A+++ GAV+ + +++++ + +GL FQ+ DD
Sbjct: 193 EDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDD 252
Query: 282 ILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAP 341
ILDV ++++LGK KD S K Y + G+E K + + IE L+ + P
Sbjct: 253 ILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKG-NTEP 311
Query: 342 LYFLANYIASRQ 353
L L + R+
Sbjct: 312 LKVLTMKLLERK 323
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 430 bits (1108), Expect = e-152
Identities = 105/293 (35%), Positives = 166/293 (56%), Gaps = 3/293 (1%)
Query: 64 FEEYMIRKAEQVNKALDEAV-VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDE 122
M + ++VN L A+ ++ ++M YSL AGGKR+RP+L + + + + +
Sbjct: 2 TNLPMNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEY 61
Query: 123 SWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALE 182
M +A ALEMIHT SLIHDDLP +DND+ RR K +H+V+GE TAILAGDALL+ A E
Sbjct: 62 ELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 121
Query: 183 HVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAK 242
++ + ++ + ++ + + A G G+V G+ +D+ SEG+ + L+ LE IH KT
Sbjct: 122 LIS-SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGA 180
Query: 243 LLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLAS 302
LL AV+ A I + E + +Y+ +G++FQ+ DD+LD +LGK G DL +
Sbjct: 181 LLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLEN 240
Query: 303 GKATYPKLMGIENAKSFAGELLGQAIEELAYFEAS-KAAPLYFLANYIASRQN 354
K+TY L+G + A+ A++EL + L + + SR +
Sbjct: 241 NKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 425 bits (1096), Expect = e-151
Identities = 116/295 (39%), Positives = 164/295 (55%), Gaps = 6/295 (2%)
Query: 64 FEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F + + +Q N+AL + + + + M+Y L GGKR+RP L A+ + G
Sbjct: 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVS 62
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
+ A A+E IH SLIHDDLP +D+D+ RR P H FGE+ AILAGDAL +LA
Sbjct: 63 TNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122
Query: 182 EHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKT 240
++ ++ VS + I+E+ SA G+ G+ G+ +D+ +EGK V L LE IH HKT
Sbjct: 123 SILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKT 182
Query: 241 AKLLEAAVVCGAVIGGG-NAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
L+ AAV GA+ G + + YA IGL FQV DDILDV + LGK G D
Sbjct: 183 GALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 242
Query: 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASR 352
GK+TYP L+G+E A+ A +L+ A + L ++ + L LA+YI R
Sbjct: 243 QQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 425 bits (1095), Expect = e-151
Identities = 185/301 (61%), Positives = 228/301 (75%), Gaps = 18/301 (5%)
Query: 58 PLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
Y+IRKA+ VNKALD AV L+ P+KIH+AMRYSLLAGGKRVRP+LCIA+CEL
Sbjct: 7 HHHHTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACEL 66
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
VGG+ES AMPAACA+EMIHTMSLIHDDLP +DND+ RR KP +H+V+GE A+LAGDALL
Sbjct: 67 VGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALL 126
Query: 178 SLALEHVAVNIAG-VSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK---DVSLKELE 233
S A EH+A + VSP RVVRA+ E+ A+G EGLVAG+ VDI+SEG +V L+ L+
Sbjct: 127 SFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLK 186
Query: 234 YIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELG 293
+IH+HKTA LLEA+ V G +IGGG+ E+ER+R +ARCIGLLFQVVDDILDVTKSS
Sbjct: 187 FIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS---- 242
Query: 294 KTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQ 353
K TYPKLMG+E ++ FA +L +A ++L F++ K APL LANYIA+RQ
Sbjct: 243 ----------KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQ 292
Query: 354 N 354
N
Sbjct: 293 N 293
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 425 bits (1096), Expect = e-150
Identities = 98/299 (32%), Positives = 142/299 (47%), Gaps = 7/299 (2%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAV-VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG 119
+ + +N L +A+ ++ AM YS+LAGGKR+RPLL +A+ + +G
Sbjct: 5 NARLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLG 64
Query: 120 GDESW--AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
ALE++HT SLIHDDLP +DND RR +P +H FG A LAGD LL
Sbjct: 65 VTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLL 124
Query: 178 SLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV 237
+LA + + + + + +A G G+VAG+ DI SE ++ L +L +H
Sbjct: 125 TLAFQWLTA--TDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHK 182
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAG 297
KT LL AV G ++G + +A GL FQ+ DDILDV S E+GK
Sbjct: 183 EKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQ 242
Query: 298 KDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASRQN 354
KD K TYP +G+ A + + L + F + + R N
Sbjct: 243 KDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDTERVN 301
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 424 bits (1092), Expect = e-150
Identities = 111/299 (37%), Positives = 164/299 (54%), Gaps = 5/299 (1%)
Query: 60 PTFPFEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
E + ++ N+ LD+ + + + + +AMRY LL GGKR RP L + ++
Sbjct: 5 HHHHSLEALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQM 64
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
+G + S A A+E IH SLIHDDLP +D+DE RR KP H F E+TAIL GDAL
Sbjct: 65 LGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQ 124
Query: 178 SLALEHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIH 236
+LA +A +++ + V + + A G +G+ G+ +D+A+E + +SL+ELE IH
Sbjct: 125 TLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIH 184
Query: 237 VHKTAKLLEAAVVCGAVIGGGNAIE-VERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
+KT L+ A+ GA+ G + + YA +GL FQV DDILD+ +E LGK
Sbjct: 185 RNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKP 244
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
G D K+TYP L+G+E A+ A LL +A+ L L A Y+ R+N
Sbjct: 245 QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY-NTEHLEEFARYVVERKN 302
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 423 bits (1091), Expect = e-150
Identities = 95/300 (31%), Positives = 164/300 (54%), Gaps = 6/300 (2%)
Query: 60 PTFPFEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
T ++ + + ++ L++ + ++ P +I A+ Y+L +GGKR+RP+L + +L
Sbjct: 5 STQMNKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDL 64
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
+ D+ A ALE+ H SLIHDDLP +DND+ RR KP+ H+ F E+TAIL GD +
Sbjct: 65 IDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQ 124
Query: 178 SLALEHVAVNIA-GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYI 235
+LA+E + + ++ + +VV + +A G+ G+V+G+ +D++ K V+ ++L I
Sbjct: 125 ALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREI 184
Query: 236 HVHKTAKLLEAAVVCGAVIGGGNAIEV-ERVRNYARCIGLLFQVVDDILDVTKSSEELGK 294
H+ KT KL+ A + ++ +R Y + IGL+FQ+ DD LD+ ++ LGK
Sbjct: 185 HLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGK 244
Query: 295 TAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQN 354
D A+ K T+ L + + A++ L F + KAA L L + +R N
Sbjct: 245 GRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS-KAAALIELTKQLQNRSN 303
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 420 bits (1083), Expect = e-149
Identities = 107/291 (36%), Positives = 158/291 (54%), Gaps = 8/291 (2%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
E + + V A+ A+ P + AM Y+ GGKR+R L I S + G +
Sbjct: 3 LSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMA 61
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
AMPAA A+E +H SL+HDD+P +DND+ RR P H+ + ++TA+LAGDAL +LA E
Sbjct: 62 QAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFEL 121
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK--DVSLKELEYIHVHKTA 241
+ S + V +A + A G EG+V G+ +DIA+E ++L E+ + KT
Sbjct: 122 CT-DPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTG 180
Query: 242 KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
L+ A GA++ G + + YA +GL FQ+ DDILDV + E GK GKD
Sbjct: 181 ALISFAAQAGAILAGA---DRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAE 237
Query: 302 SGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASR 352
+ KAT+ L+G+ AKS A +L+ +A LA + A+ L A Y+ R
Sbjct: 238 AHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGE-AASTLRACARYVIER 287
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 420 bits (1081), Expect = e-148
Identities = 104/296 (35%), Positives = 161/296 (54%), Gaps = 5/296 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAV-VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
+ + V K + + + ++ +AM YS+ AGGKR+RPLL + +
Sbjct: 8 HSLTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQK 67
Query: 121 D-ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
+ E+ A +LEMIHT SLIHDDLP +D+D+ RR KP +H+VFGE+TAILAGD LL+
Sbjct: 68 EMETQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTG 127
Query: 180 ALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHK 239
A + +++ + + V + ++ A G +G+V+G+ DI E ++L+EL +H K
Sbjct: 128 AFQLLSL--SQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKK 185
Query: 240 TAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
T L+E A++ G V+ + + +A GL FQ+ DD+LD T + +LGK G+D
Sbjct: 186 TGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRD 245
Query: 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAA-PLYFLANYIASRQN 354
A K+TYP L+GI AK L + L +A+ LAN + Q
Sbjct: 246 EALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQL 301
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 400 bits (1031), Expect = e-141
Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 10/287 (3%)
Query: 73 EQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD-ESWAMPAA 129
E L++ + V ++A+ L AGGK R L ++ + + + A+ A
Sbjct: 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVA 66
Query: 130 CALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIA 189
ALE IHT SLIHDDLP +DN + RR P H+ + E+TAIL GDAL + A ++ A
Sbjct: 67 LALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSH--A 124
Query: 190 GVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVV 249
+ + ++ I + G+ G+V G+ +D E K +SL ELE++H HKTA+L+ AA+
Sbjct: 125 HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALK 184
Query: 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPK 309
G I N E ++ +GL+FQ+ DDI+DVT S E+ GK D+ K ++
Sbjct: 185 MGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFVN 242
Query: 310 LMGIENAKSFAGELLGQAIEELAYFEASKAAPL--YFLANYIASRQN 354
L+G+E A LL + ++L K A + + Y+ +
Sbjct: 243 LLGLEQAIKTKENLLNECEQDLEKLN-EKLAQMIQNLIIQYLEGHHH 288
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 400 bits (1030), Expect = e-140
Identities = 92/299 (30%), Positives = 155/299 (51%), Gaps = 14/299 (4%)
Query: 63 PFEEYMIRKAEQVNKALDEAV--VLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
P + + E+ L + + KA +L GGKR RP L +A + G
Sbjct: 6 PNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVG 65
Query: 121 ------DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGD 174
++ A ++E +HT SLIHDDLP +DN RR+ P H + E+TA+L GD
Sbjct: 66 QKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGD 125
Query: 175 ALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEY 234
AL + + E ++ A + +V I + + G++G++ G+ +D E ++L++L +
Sbjct: 126 ALNTYSFELLSN--ALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTF 183
Query: 235 IHVHKTAKLLEAAVVCGAVIGGGNAIEVER-VRNYARCIGLLFQVVDDILDVTKSSEELG 293
+H HKTAKL+ A+++ G V G E+ + ++ + +GL FQV+DDI+DVT+ EE G
Sbjct: 184 LHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESG 243
Query: 294 KTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASR 352
KT D S K ++ L+G+E A ++A L + + +L + L N + +
Sbjct: 244 KTTHLD--SAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKP-AYPLLQENLNALLNT 299
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate synthase,
transferase; 1.90A {Mentha x piperita} PDB: 3krc_B*
3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 381 bits (981), Expect = e-134
Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 18/273 (6%)
Query: 65 EEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESW 124
+ Y + + L +++ ++PP + M + A LC+A+CELVGGD S
Sbjct: 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQ 61
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV 184
AM AA A+ ++H + +H+ LP D R SKPA +G + +L GD ++ E +
Sbjct: 62 AMAAAAAIHLVHAAAYVHEHLPLTDGS-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELL 120
Query: 185 AVNI---AGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTA 241
A ++ PDR++R I E+ A G EG+++G + + SL +EY+ K
Sbjct: 121 AGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYG 180
Query: 242 KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLL---------FQVVDD-ILDVTK--SS 289
++ CGA++GG E++++RN+ G L Q++D+ I+ K +
Sbjct: 181 EMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELAL 240
Query: 290 EELGKTAGKD--LASGKATYPKLMGIENAKSFA 320
EELG GK+ L S P L +
Sbjct: 241 EELGGFHGKNAELMSSLVAEPSLYAAHHHHHHH 273
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics,
protein structure initiative, NEW YORK structural
genomix research consortium; 2.20A {Antirrhinum majus}
Length = 273
Score = 352 bits (906), Expect = e-122
Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 8/273 (2%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG 120
+ Y + L +A+ ++ P + + M + A + LC+A+CELVGG
Sbjct: 3 LTRTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGG 62
Query: 121 DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
D S AM AA A+ ++H + H++LP D SK F + +L GD ++
Sbjct: 63 DRSDAMAAAAAVHLMHVAAYTHENLPLTDGP---MSKSEIQHKFDPNIELLTGDGIIPFG 119
Query: 181 LEHVA--VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVH 238
LE +A ++ +PDR++RAI E+ MG EG+V G++ ++ + L+ +EY+
Sbjct: 120 LELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLN-DLELIEYVCKK 178
Query: 239 KTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILD-VTKSSEELGKTAG 297
K L CGA++GG + ++E++R + +G + ++ +EL + A
Sbjct: 179 KEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGFEGRIKELKELAV 238
Query: 298 KDLAS-GKATYPKLMGIENAKSFAGELLGQAIE 329
K+L S G + G+ + + G
Sbjct: 239 KELESFGGEKIELIRGVFELEHSLAGVEGHHHH 271
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 280 bits (717), Expect = 9e-94
Identities = 79/292 (27%), Positives = 128/292 (43%), Gaps = 17/292 (5%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
+ K E V + + E + + +AM YS GG R+RPLL + E +G +E
Sbjct: 7 HHHHHHMKXEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEE 66
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
+ A A+E+ HT SLIHDDLP +DN + RR P+ H +GE A+LAGD L LA
Sbjct: 67 XLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQ 126
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK--DVSLKELEYIHVHKTA 241
++ + + L+ GE +D+ E + +VS + +E ++ T
Sbjct: 127 ISXIGNSXIFEEF---------SETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTG 177
Query: 242 KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
L ++ G + + G+ FQ+ DD+ D+ S E++GK GKD
Sbjct: 178 ALFAFCFSAPFILXGXDH---TXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD-- 232
Query: 302 SGKATYPKLMGIENAKSFAGELLGQAIEELAYF-EASKAAPLYFLANYIASR 352
+ T +GI+ A+ A + + + L L + R
Sbjct: 233 TEXVTLVXXVGIQXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 282 bits (723), Expect = 1e-93
Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 19/292 (6%)
Query: 61 TFPFEEYMIRKAEQVNKALDEAVVLQPPVK----------IHKAMRYSLLAGGKRVRPLL 110
+ + R L AV P I + GGK VRP L
Sbjct: 2 SLDVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPAL 61
Query: 111 CIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAI 170
+ S E+ G +P A A+E++H SL+HDDL +D DE+RR + +V G + AI
Sbjct: 62 AVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAI 119
Query: 171 LAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSL 229
L GDAL +LA E + + + V R R + + L+ G+ DI+ E + VS+
Sbjct: 120 LVGDALFALANEVL-LELGTVEAGRATRRLTKAS-----RSLIDGQAQDISYEHRDRVSV 173
Query: 230 KELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSS 289
+E + +KT LL A GAV+GG + + + Y +GL FQ VDD+L +
Sbjct: 174 EECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDP 233
Query: 290 EELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAP 341
+ GK DL K + P + + + + L + + + +
Sbjct: 234 DATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSE 285
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum
calidifontis}
Length = 285
Score = 263 bits (674), Expect = 4e-87
Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 27/296 (9%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
+ ++ E+V L++ P+ + KA+R+ + GK +RPLL + +
Sbjct: 4 YSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRR 63
Query: 122 ESW---AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLS 178
+ AA +E++H +SL+ DD+ +D ++RR ++G+ AI+A D L++
Sbjct: 64 SIMDPRILEAAAIVELLHVVSLLQDDV--MDQHDQRRGIKTPRAMYGDGRAIVASDWLIA 121
Query: 179 LALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVH 238
+++ VV +A++ + L G+ +D+ E
Sbjct: 122 ESIKMAV-----NLGADVVTYLADVA-----QRLSVGQALDLEGERDKA--------AEF 163
Query: 239 KTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298
KTA L+EAA+V VI G +E + +G+L+Q DD D E K+
Sbjct: 164 KTAPLIEAALVMPLVILGRRE-LIETAKKLGTKLGILYQYSDDYSDENVERPE-TKSIAN 221
Query: 299 DLASGKATYPKLM--GIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASR 352
++ + + I + L+G+A+E + A LYF +++
Sbjct: 222 EIGRYLLKIKEHVGDAIAPFERLIKYLIGKALEGTLTVSRTIAENLYFQSHHHHHH 277
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus
horikoshii}
Length = 342
Score = 251 bits (643), Expect = 9e-82
Identities = 93/283 (32%), Positives = 146/283 (51%), Gaps = 7/283 (2%)
Query: 60 PTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG 119
+ KA+ +++ + E + + P +++A R+ LAGGKRVRP + + S E VG
Sbjct: 3 KYEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVG 62
Query: 120 GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
GD A+ A A+E+IH SL+HDD+ +D DE RR KP H ++G + AILAGD L S
Sbjct: 63 GDPLRAIYPAVAIELIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSK 120
Query: 180 ALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVH 238
A E VA A + P++ R + + A L G+ D+ E K V+++E +
Sbjct: 121 AFEAVAR--AEIPPEKKARVLEVIVKASNE--LCEGQARDLEFEKKSTVTIEEYMEMISG 176
Query: 239 KTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298
KT L EA+ G +IG N ++ + ++ R +G+ FQ+ DD+LD+ ++LGK G
Sbjct: 177 KTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGS 236
Query: 299 DLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAP 341
D+ GK T ENA + + + A +
Sbjct: 237 DIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGII 279
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 241 bits (616), Expect = 2e-77
Identities = 84/342 (24%), Positives = 132/342 (38%), Gaps = 64/342 (18%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
+ +V KAL + + +A+ Y + GGKR+RPLL +A+ E V G
Sbjct: 6 VSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWR 65
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
A+PAA +E+IH SLI+DD+ +D + RR P + FG++ AIL G E
Sbjct: 66 PALPAAAIVELIHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEA 123
Query: 184 VAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG-----------KDVSLKEL 232
V P + +AE+ A+ GE +DI E + +
Sbjct: 124 VL---DTPKPTLFAKEVAEVIKAI-----DEGERLDILFEAAGRSDPYFVQARWREVTLD 175
Query: 233 EYIHV--HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSE 290
+YI + KT L+ AA G + + E N+ G+ FQ++DD+LD+ +
Sbjct: 176 DYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPK 235
Query: 291 ELGKTAGKDLASGKATYPKLM--------------------------------------- 311
+ GK GKD+ K +
Sbjct: 236 KFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVG 295
Query: 312 GIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYIASRQ 353
E A A +A LA + L L ++I +R+
Sbjct: 296 AREEALRLAARYREEAERHLAKIPNNGT--LKELLDFIVARE 335
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 219 bits (561), Expect = 2e-69
Identities = 71/270 (26%), Positives = 108/270 (40%), Gaps = 18/270 (6%)
Query: 68 MIRKAEQVNKALDE---AVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESW 124
M+ E + +AL E A + P ++ GGK +R LL + S G
Sbjct: 1 MVPAPEAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEA 60
Query: 125 AMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHV 184
+ AA ALE+ L+HDD+ D E RR +PA H + A+ AGDA+ + +
Sbjct: 61 GLEAATALELFQNWVLVHDDI--EDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLL 118
Query: 185 A-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASE-GKDVSLKELEYIHV--HKT 240
A G+ P V+ E+ G+ +D+ G L+ +Y + HK
Sbjct: 119 AEGLARGLFPPEVLLEFHEVVRRT-----AYGQHLDLLWTLGGTFDLRPEDYFRMVAHKA 173
Query: 241 AKLLE-AAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
A A + GA++ G +G FQ+VDD+L++ E GK D
Sbjct: 174 AYYTAVAPLRLGALLAGKT--PPAAYEEGGLRLGTAFQIVDDVLNLE-GGEAYGKERAGD 230
Query: 300 LASGKATYPKLMGIENAKSFAGELLGQAIE 329
L GK T L +E A +
Sbjct: 231 LYEGKRTLILLRFLEEAPPEERARALALLA 260
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 209 bits (535), Expect = 5e-66
Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 31/291 (10%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
V + E++ L + K + + +GGKR+RP++ + E+ G S ++ AA A+
Sbjct: 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAV 71
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
EM+H+ SLIHDDL LD RR+ P++ E FG S A+L GD L++ ++ ++
Sbjct: 72 EMMHSASLIHDDL--LDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY----- 124
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVC 250
++V++ + M GE +D+ E + E +Y KTA L +
Sbjct: 125 GEKVIQDFGKAGMDM-----AEGEVLDLKLEDESFG--ENDYFKCIYKKTASLFAISASI 177
Query: 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKL 310
GA GG ER ++ +G +Q+VDDIL+ GK+ T P +
Sbjct: 178 GAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFL------EVVEGKESKFTSETLPHI 231
Query: 311 MGIENAK--------SFAGELLGQAIEELAYFEASKA-APLYFLANYIASR 352
+K + A E L F A L+ + +YI
Sbjct: 232 YMKSTSKEEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVD 282
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 212 bits (541), Expect = 6e-66
Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 40/305 (13%)
Query: 54 STDIPLPTF-PFEEYMIRKAEQVNKALDEAV---------VLQPPVKIHKAMRYSLLAGG 103
D+ L +F + + + E V L + + + P +R +L GG
Sbjct: 3 LKDVSLSSFDAHDLDLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGG 62
Query: 104 KRVRPLLCIASCELVGG------DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSK 157
KR+RPL A G + AA +LE I +LIHDD+ +D+ + RR
Sbjct: 63 KRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGA 120
Query: 158 PASH----------------EVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIA 201
P H E FG S +ILAGD L A + + +G+S + + R
Sbjct: 121 PTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQD--SGLSAEALARTRD 178
Query: 202 EMCSAMGVEGLVAGEFVDIASEGK-DVSLKELEYIHVHKTAKLL-EAAVVCGAVIGGGNA 259
M E ++ G+ +DI E + S++ + ++ KTA + GA I GG+
Sbjct: 179 AW-RGMRTE-VIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSP 236
Query: 260 IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSF 319
++ + +Y IG+ FQ+ DD+L V GK AG D+ GK T + ++ A
Sbjct: 237 QLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQ 296
Query: 320 AGELL 324
+ E
Sbjct: 297 SPEAA 301
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, PR structure
initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus
brevis} PDB: 3n3d_A
Length = 334
Score = 201 bits (513), Expect = 3e-62
Identities = 66/321 (20%), Positives = 114/321 (35%), Gaps = 51/321 (15%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESW-AMPAACA 131
+ L V L IH + L +GGK +RP A A
Sbjct: 26 TALQDYLLRTVQLDNQP-IHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAA 84
Query: 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV 191
+E++H +LIHDD+ +D+ RR +G+ AI AGD + ++ + V +
Sbjct: 85 IEILHVGTLIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDR 142
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVV 249
+++ + + + GE + + Y++ KTA+L +
Sbjct: 143 ---SLIQNHIDAMHRI-----LQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCY 193
Query: 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPK 309
GA + G ++R R+ IG +Q++DDILD + K +DL SG + P
Sbjct: 194 QGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPL 253
Query: 310 LM-----------------------------------GIENAKSFAGELLGQAIEELAYF 334
L+ G+ AK A + +A+ +
Sbjct: 254 LLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQL 313
Query: 335 EASKA-APLYFLANYIASRQN 354
A L L + R +
Sbjct: 314 PVGSAQQSLEQLTRLLLRRDH 334
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 199 bits (507), Expect = 3e-61
Identities = 89/322 (27%), Positives = 145/322 (45%), Gaps = 54/322 (16%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
VN+ + + + + I + + AGGKR+RPL+ +A+ L G D A A+
Sbjct: 36 AGVNRLITDRMQSDVAI-IPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAV 94
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
E IHT +L+HDD+ +D + RR K A+H ++G + ++L GD L + A E + +
Sbjct: 95 EFIHTATLLHDDV--VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFEL----MVETN 148
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVC 250
+ + +A + GE + + D++L + Y+ + KTA+L AA
Sbjct: 149 SMKALEILARASRVI-----AEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEA 202
Query: 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP-- 308
GAV G + + E +R+Y +GL FQ+ DD LD ++E LGK AG D GKAT P
Sbjct: 203 GAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLL 262
Query: 309 --------------------------------KLM----GIENAKSFAGELLGQAIEELA 332
+L+ ++ A + +A LA
Sbjct: 263 LAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALA 322
Query: 333 YFEASKA-APLYFLANYIASRQ 353
F A+ L LA++ SR+
Sbjct: 323 MFPANDWREALEELADFAVSRR 344
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Length = 325
Score = 195 bits (499), Expect = 3e-60
Identities = 83/322 (25%), Positives = 136/322 (42%), Gaps = 55/322 (17%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
+V K L E + I+KA + L +GGKRVRP+ + S L + + A +L
Sbjct: 15 IEVEKRLYECIQSDSET-INKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSL 73
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
E++H SL+HDD +DN + RR + H F + TAI G LL+ AL++ IA ++
Sbjct: 74 ELVHMASLVHDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQN----IATIN 127
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVC 250
+ + ++ + GEF +A + + Y+ KTA L+EA+
Sbjct: 128 NSKFHQIFSKTILEV-----CFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHL 181
Query: 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKL 310
GA+ + ++ + CIG+ +Q++DDILD T LGK G D+ +G TYP +
Sbjct: 182 GALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLM 241
Query: 311 M---------------------------------------GIENAKSFAGELLGQAIEEL 331
GIE A+ + + +A L
Sbjct: 242 AAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHL 301
Query: 332 AYFEASKA-APLYFLANYIASR 352
+ + S L + + R
Sbjct: 302 SQLQDSNIKDYLEEIHEKMLKR 323
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 195 bits (497), Expect = 7e-60
Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 53/321 (16%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
VN + E + + +I + + + AGGKR+RP+L +A+ LVG + + A +
Sbjct: 23 AAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATV 82
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
E IHT +L+HDD+ +D +RR +P ++ ++ +++L GD L + + + +
Sbjct: 83 EFIHTATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQL----MTDTG 136
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVC 250
RV+ +A + + GE + + + +++ E Y+ V KTA L AA
Sbjct: 137 NMRVMEILANASAVI-----AEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEV 190
Query: 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKL 310
G +IGG +V+ + +Y +G+ FQ+VDD+LD S E+GK G D K T P +
Sbjct: 191 GGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVI 250
Query: 311 M--------------------------------------GIENAKSFAGELLGQAIEELA 332
+E + A A + LA
Sbjct: 251 KAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALA 310
Query: 333 YFEASKA-APLYFLANYIASR 352
L LA+Y+ R
Sbjct: 311 KLPDHPLRQMLDDLADYVVER 331
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A
Length = 289
Score = 193 bits (492), Expect = 1e-59
Identities = 57/296 (19%), Positives = 104/296 (35%), Gaps = 27/296 (9%)
Query: 60 PTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVG 119
E+ + +++ +++ + + Y +L GKR R L + +G
Sbjct: 7 HHMSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSY-ILKDGKRFRGTLNMFFTVALG 65
Query: 120 GDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
GD + A A+E++H+ SL D+ +D D RR A+ V+G I + L+
Sbjct: 66 GDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPT 123
Query: 180 ALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV-- 237
AL I D + E+ G D+ +YI
Sbjct: 124 ALRI----IQTSYGDDALNTSIELWKDT-----SVGALRDMYDNS--------DYIRTIE 166
Query: 238 HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEE----LG 293
KT L + + V A +++ + + +G+++QV+DD +D E
Sbjct: 167 LKTGSLFKLSTVLSAYASKHYN-TKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSA 225
Query: 294 KTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIEELAYFEASKAAPLYFLANYI 349
K K GK K EL+ + Y ++ P + +
Sbjct: 226 KQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGLL 281
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 188 bits (480), Expect = 3e-57
Identities = 49/271 (18%), Positives = 102/271 (37%), Gaps = 17/271 (6%)
Query: 72 AEQVNKALDEAVVLQP------PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWA 125
++ +DE + P I K + LL GK R L + ++ +
Sbjct: 3 KNKMEAKIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQL 62
Query: 126 MPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVA 185
+ +E++H SL+ DD+ DN RR + SH +FG + I + + A++ V+
Sbjct: 63 AIVSQIVELLHNSSLLIDDI--EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVS 120
Query: 186 VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEG--KDVSLKELEYIHV--HKTA 241
I + L G+ +DI ++ + Y+++ +KT
Sbjct: 121 Q--LTTKEPLYHNLITIFNEELIN--LHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTG 176
Query: 242 KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
L + + + + + +G+++Q+ DD L++ K +D+
Sbjct: 177 GLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDIT 235
Query: 302 SGKATYPKLMGIENAKSFAGELLGQAIEELA 332
GK ++P + + K+ I +
Sbjct: 236 EGKLSFPIVHALNFTKTKGQTEQHNEILRIL 266
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural GENO structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 187 bits (476), Expect = 3e-57
Identities = 58/316 (18%), Positives = 107/316 (33%), Gaps = 56/316 (17%)
Query: 78 ALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHT 137
++++ + + + +Y L GK+VR L A + E EM+H
Sbjct: 1 SMEKTQETVQRI-LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHN 59
Query: 138 MSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVV 197
SL+ DD+ DN + RR P +H ++G + I + + + L LE + + V
Sbjct: 60 ASLLIDDI--EDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLE----KVLTLDHPDAV 113
Query: 198 RAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVCGAVIG 255
+ + G+ +DI E EY + KT L AV +
Sbjct: 114 KLFTRQLLELHQ-----GQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFS 168
Query: 256 GGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP------- 308
E ++ +GL FQ+ DD ++ K+ +DL GK ++P
Sbjct: 169 DYK----EDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWS 224
Query: 309 -------------------------KLM----GIENAKSFAGELLGQAIEELAYFEAS-- 337
+ E ++ EL +A +++ +
Sbjct: 225 RPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE 284
Query: 338 KAAPLYFLANYIASRQ 353
A + L+
Sbjct: 285 LVALVKHLSKMFKEEN 300
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, protein structure
initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
PDB: 3q2q_A*
Length = 360
Score = 188 bits (480), Expect = 3e-57
Identities = 80/321 (24%), Positives = 123/321 (38%), Gaps = 56/321 (17%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWA-MPAACA 131
QV + L + + + + AGGKR RP+ + + E S + AA
Sbjct: 45 VQVEELLHTELSSGEDF-LVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVV 103
Query: 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV 191
+E+ H +L HDD+ +D RR P+++ + S AILAGD LL+ A ++
Sbjct: 104 VEITHLATLYHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQL---- 157
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVV 249
V AE + V G+ + D E Y +V KT L+ +A
Sbjct: 158 -GTDTVAHFAETFGEL-----VTGQMRETVGPR-DTDPIE-HYTNVIREKTGVLIASAGY 209
Query: 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPK 309
GA+ G ++ ++N+ +G++FQ+VDDI+D+ + E GKT G DL G T P
Sbjct: 210 LGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPV 269
Query: 310 LM-------------------------------------GIENAKSFAGELLGQAIEELA 332
L G + A + A EL
Sbjct: 270 LYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELD 329
Query: 333 YFEASKA-APLYFLANYIASR 352
S L LA + R
Sbjct: 330 RLPDSTVKEALRNLATFTVKR 350
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein
structure initiative, isoprene biosynthesis,
transferase; 2.30A {Bacteroides thetaiotaomicron}
Length = 334
Score = 186 bits (474), Expect = 2e-56
Identities = 77/323 (23%), Positives = 125/323 (38%), Gaps = 57/323 (17%)
Query: 73 EQVNKALDEAVVLQPPVK-IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACA 131
E D L + + + GK +RP+L + L G + AA +
Sbjct: 18 EDFKALFDTP--LSDSNALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVS 75
Query: 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV 191
LE++HT SL+HDD+ +D RR + + + +F ++LAGD LL+ +L H
Sbjct: 76 LELLHTASLVHDDV--VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVH----AEQT 129
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVV 249
+ ++R ++ + + GE + +++ + S E Y V KTA L A
Sbjct: 130 NNYEIIRLVSSLGQKL-----AEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAE 183
Query: 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYP- 308
A+ EV R IG+ FQ+ DDI D S+++GK G D+ GK T P
Sbjct: 184 AAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPA 242
Query: 309 ---------------------------------KLM----GIENAKSFAGELLGQAIEEL 331
+ GIE A + +A + L
Sbjct: 243 LYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLL 302
Query: 332 AYFEASKA-APLYFLANYIASRQ 353
A S L +Y+ +R+
Sbjct: 303 AALPDSNICLALRTYLDYVVARE 325
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 181 bits (462), Expect = 5e-55
Identities = 55/260 (21%), Positives = 109/260 (41%), Gaps = 18/260 (6%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACAL 132
+ + + + I + + R + +L + + + A+ +
Sbjct: 7 KAIQNKIASWIKEIESGFIDELFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIV 66
Query: 133 EMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVS 192
EMI T SL+HDD+ +D RR P+ + +FG A++ GD S A ++
Sbjct: 67 EMIQTASLLHDDV--IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKM----- 119
Query: 193 PDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVVC 250
+ + +A++ + GE D+ + + +Y + KTA +EA++
Sbjct: 120 GELIAQALSNAVLRL-----SRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKS 173
Query: 251 GAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKL 310
A++ + + ++ G+ FQ++DD+LD+T+ ++ LGK D GK T P L
Sbjct: 174 MAILLNK---DAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYL 230
Query: 311 MGIENAKSFAGELLGQAIEE 330
+ E LL ++
Sbjct: 231 LLYEKLNQHDQGLLISYFKQ 250
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 176 bits (449), Expect = 3e-53
Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 24/262 (9%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES-WAMPAACA 131
E+V + +++ + + + L GK +R L I S + G + A+ + A
Sbjct: 14 EKVKERIEQILS----QFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAA 69
Query: 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV 191
LE++H SL+HDD+ +D RR K + ++G+ A+ AGD +L A + +
Sbjct: 70 LELVHLASLLHDDV--IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHT----VEEI 123
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHV--HKTAKLLEAAVV 249
+++ RA + M E ++ S K ++ + EY+ + K+ L A+
Sbjct: 124 GNNKLRRAFLNVIGKM-----SEAELIEQLSRYKPITKE--EYLRIVEGKSGALFGLALQ 176
Query: 250 CGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPK 309
A++ G E + N IG ++Q+ DDI+D E++GK DL +G A++P
Sbjct: 177 LPALLEGE---LGEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPL 232
Query: 310 LMGIENAKSFAGELLGQAIEEL 331
+ +E + L
Sbjct: 233 VTAMEKFPEARQMFENRDWSGL 254
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase,
bisphosphonate, dimethyl ALLY pyrophosphate sulfate,
FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma
cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A*
3icn_A* 3icz_A* 3id0_A*
Length = 362
Score = 173 bits (439), Expect = 4e-51
Identities = 47/286 (16%), Positives = 91/286 (31%), Gaps = 31/286 (10%)
Query: 71 KAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES------- 123
+A +++ + + + + M + GGK R + + E
Sbjct: 15 QAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKE 74
Query: 124 ----WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
A +E + L+ DD+ D RR KP + G +T D ++
Sbjct: 75 RILHDACVGGWMIEFLQAHYLVEDDIM--DGSVMRRGKPCWYRFPGVTTQCAINDGIILK 132
Query: 180 ALEHVAVNIAGVSPDRVVRAIA---EMCS------AMGVEGLVAGEFVDIASEGK----- 225
+ + + + ++ V + +D
Sbjct: 133 SWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDF 192
Query: 226 -DVSLKELEYIHVHKTAKLL-EAAVVCGAVIGGGNA-IEVERVRNYARCIGLLFQVVDDI 282
+ + + I +KT +V G + A +E+ V A IG FQV DD+
Sbjct: 193 AEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDV 252
Query: 283 LDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAGELLGQAI 328
+D E+LGK G D+ K ++ + + A +
Sbjct: 253 MDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANY 297
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 170 bits (432), Expect = 3e-50
Identities = 86/341 (25%), Positives = 128/341 (37%), Gaps = 74/341 (21%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAG--GKRVRPLLCIASCELVGGDESWAMPA-- 128
++ L E V+ + P + A Y G GK+ R + + + A+
Sbjct: 19 SLLSNKLREMVLAEVPK-LASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGES 77
Query: 129 ---------------ACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAG 173
A EMIH SL+HDD+ LD+ + RR + + V G ++LAG
Sbjct: 78 TDIVTSELRVRQRGIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAG 135
Query: 174 DALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELE 233
D LLS A +A + VV +A VE LV GE ++I S +
Sbjct: 136 DFLLSRACGA----LAALKNTEVVALLATA-----VEHLVTGETMEITSST-EQRYSMDY 185
Query: 234 YIHV--HKTAKLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEE 291
Y+ +KTA L+ + AV+ G A Y R +GL FQ++DDILD T +S
Sbjct: 186 YMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSAS 245
Query: 292 LGKTAGKDLASGKATYPKLM---------------------------------GIENAKS 318
LGK + D+ G T P L GI+ A+
Sbjct: 246 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARE 305
Query: 319 FAGELLGQAIEELAYFEASKAAP-------LYFLANYIASR 352
A E A + + L L + + +R
Sbjct: 306 LAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITR 346
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 166 bits (423), Expect = 1e-48
Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 26/276 (9%)
Query: 71 KAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES------- 123
+ + V ++ + ++Y GGK R L +A+ + G
Sbjct: 39 VRDLTEDGIGHPEVGDAVARLKEVLQY-NAPGGKCNRGLTVVAAYRELSGPGQKDAESLR 97
Query: 124 WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEH 183
A+ +E+ SL+ DD+ +D RR + ++ G + LL ++
Sbjct: 98 CALAVGWCIELFQAASLVADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYR 155
Query: 184 VAVNIAGVSP--DRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD------VSLKELEYI 235
V P ++ + G+ +D+ + S + + I
Sbjct: 156 VLKKYCRQRPYYVHLLELFLQTAYQT-----ELGQMLDLITAPVSKVDLSHFSEERYKAI 210
Query: 236 HVHKTAKL--LEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELG 293
+KTA ++G + E E + +G FQ+ DD LD G
Sbjct: 211 VKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTG 270
Query: 294 KTAGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
G D+ K ++ + ++ +LL
Sbjct: 271 A-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYG 305
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 165 bits (420), Expect = 6e-48
Identities = 59/287 (20%), Positives = 108/287 (37%), Gaps = 39/287 (13%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
+++Y +N+ E + + K +K + GGK R +L I E V +
Sbjct: 40 YDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDI 99
Query: 124 ------WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALL 177
A A +E++ L+ DD+ +D E RR+K + + T D LL
Sbjct: 100 NSSEWEKAACLAWCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLL 157
Query: 178 SLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK------------ 225
+ + I + V IA ++ + G+ +D
Sbjct: 158 LYNSIYKLIEIYLRNESCYVDVIATF-RDATLK-TIIGQHLDTNIFSDKYSDAHREIDVN 215
Query: 226 -------------DVSLKELEYIHVHKTAKLL-EAAVVCGAVIGGGNA--IEVERVRNYA 269
++ + I +HKTA +VCG ++ G + +++ + +
Sbjct: 216 NINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDIS 275
Query: 270 RCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENA 316
+G FQ+ DD LD+ S + GK G D+ + K T+P + E
Sbjct: 276 MLMGEYFQIHDDYLDIFGDSTKTGKV-GSDIQNNKLTWPLIKTFELC 321
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 163 bits (413), Expect = 3e-47
Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 19/263 (7%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGG--- 120
++++ + + K + +P ++ + + GK +R + + L
Sbjct: 32 YDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLSSAYSN 91
Query: 121 -DESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSL 179
+E I + LI DD+ +D+ + RR P + V G+S AI L L
Sbjct: 92 IKRDSIYLLGWVVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKML 149
Query: 180 ALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK---DVSLKELEYIH 236
+L + + D V++ ++ V G+ +D++ D + +
Sbjct: 150 SLSLIFELSSVFGNDIVMKIQKIYNESIFF--TVLGQHLDLSYFDLSKADKISERYFSMV 207
Query: 237 VHKTAKLL-EAAVVCGAVIGGGNAIE--VERVRNYARCIGLLFQVVDDILDVTKSSEELG 293
KT++ V G + + + +G +QV +D+ D
Sbjct: 208 EMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----N 262
Query: 294 KTAGKDLASGKATYPKLMGIENA 316
+ D+ K T+P E A
Sbjct: 263 DSNADDICRFKLTWPLQKSFEIA 285
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex,
isoprene biosynthesis, transferase; HET: 721; 1.94A
{Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A*
3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Length = 390
Score = 163 bits (413), Expect = 4e-47
Identities = 51/289 (17%), Positives = 93/289 (32%), Gaps = 44/289 (15%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES 123
++E + + + + + V+ + M + GGK R L I E +
Sbjct: 33 YDEI---QMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLSP 89
Query: 124 -----------------WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGE 166
A +E + L+ DD+ +DN RR KP +
Sbjct: 90 NNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDV 147
Query: 167 STAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGK- 225
+ D LL + H+ + + + + G+ D+ S
Sbjct: 148 TVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLL-CRFNRVDYT-TAVGQLYDVTSMFDS 205
Query: 226 ----------------DVSLKELEYIHVHKTAKL-LEAAVVCGAVIGGGNAIE-VERVRN 267
+ +L + I +KTA +V G ++ +
Sbjct: 206 NKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEE 265
Query: 268 YARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENA 316
A +G FQV DD++D E LGK G D+ K ++ + + A
Sbjct: 266 LAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKA 313
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase,
structural genomics, structural GEN consortium, SGC,
transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F*
1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A*
1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F*
2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Length = 374
Score = 154 bits (391), Expect = 6e-44
Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 24/271 (8%)
Query: 75 VNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES-------WAMP 127
+ + ++ + + Y GGK R L + + + A
Sbjct: 50 TEDEMGHPEIGDAIARLKEVLEY-NAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWT 108
Query: 128 AACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGEST-AILAGDALLSLALEHVAV 186
+E++ L+ DD+ +D+ RR + ++ G AI + L + +
Sbjct: 109 VGWCVELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYR--LL 164
Query: 187 NIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKD------VSLKELEYIHVHKT 240
+ + I + G+ +D+ + + + K + I +K+
Sbjct: 165 KLYCREQPYYLNLIELF-LQSSYQ-TEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKS 222
Query: 241 AKLL-EAAVVCGAVIGGGNA-IEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGK 298
A + + G + E + +G FQ+ DD LD+ GK G
Sbjct: 223 AFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGT 281
Query: 299 DLASGKATYPKLMGIENAKSFAGELLGQAIE 329
D+ K ++ + ++ A ++L +
Sbjct: 282 DIQDNKCSWLVVQCLQRATPEQYQILKENYG 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 7e-07
Identities = 51/327 (15%), Positives = 96/327 (29%), Gaps = 122/327 (37%)
Query: 65 EEYMIRKAEQVNKALDEA--------------VVLQPPVK--IHKAMRYSLLAGGKRVRP 108
+ Y + ++ + A +V+ PV IH GKR+R
Sbjct: 1634 DLY--KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG-----GEKGKRIR- 1685
Query: 109 LLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGEST 168
+ ++I + + D + +++ E+ ST
Sbjct: 1686 --------------------------ENYSAMIFETIV----DGKLKTEKIFKEINEHST 1715
Query: 169 A-ILAGDA-LLSL------ALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGL------VA 214
+ + LLS AL + A + +GL A
Sbjct: 1716 SYTFRSEKGLLSATQFTQPAL--TLMEKA------AFEDLKS-------KGLIPADATFA 1760
Query: 215 G----EFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGN----AIEVERVR 266
G E+ +AS +S++ L + V ++ AV + G N AI RV
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEV-VFYRGMTMQVAVPRDEL-GRSNYGMIAINPGRV- 1817
Query: 267 NYARCIGLLFQVVDDILD-VTKSSEEL----------------GKTAGKDLASGKATYPK 309
+ + +++ V K + L G D + + K
Sbjct: 1818 ----AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 310 LMGIENAK---SFAGELLGQAIEELAY 333
L I+ + S + E +E +
Sbjct: 1874 LQKIDIIELQKSLSLE----EVEGHLF 1896
Score = 48.1 bits (114), Expect = 3e-06
Identities = 53/317 (16%), Positives = 88/317 (27%), Gaps = 119/317 (37%)
Query: 6 TIPSYGNSTL---FRNPI-----NDFKKSPYRAPIFRFKLFSKKIKARHAQNSVFESTDI 57
+YG S L NP+ +K + +F + + +F+ +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 58 PLPTFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCEL 117
++ F L QP A+ L
Sbjct: 1713 HSTSYTFRS--------EKGLLSATQFTQP------AL---TLM---------------- 1739
Query: 118 VGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDA-L 176
A A E + + LI D F A H + GE A LA A +
Sbjct: 1740 -----EKA-----AFEDLKSKGLIPADATF-----------AGHSL-GEYAA-LASLADV 1776
Query: 177 LSLA-----------LEHVAVN----------IAGVSPDRVVRAIAEMCSAMGVEGLVA- 214
+S+ VAV + ++P RV + ++ VE +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 215 -GEFVDIA---SEGK-----------DVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNA 259
G V+I E + D L +I + K ++E +
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI-DIIELQK----------S 1885
Query: 260 IEVERVRNYARCIGLLF 276
+ +E V G LF
Sbjct: 1886 LSLEEVE------GHLF 1896
Score = 45.4 bits (107), Expect = 2e-05
Identities = 61/363 (16%), Positives = 124/363 (34%), Gaps = 97/363 (26%)
Query: 2 AVSATIPSYGNSTLFRNPINDFKKSPYRAPIFRFKLFSKKIKARHAQNSVFEST---DIP 58
A++A + ++TL + + K+ A ++ +K+ + + +++F + +
Sbjct: 103 ALAAKLLQENDTTLVK--TKELIKNYITA-----RIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 59 L-PTF----PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIA 113
L F ++Y +E L+ +++ Y +L V L+ +
Sbjct: 156 LVAIFGGQGNTDDY-----------FEE---LR---DLYQ--TYHVL-----VGDLIKFS 191
Query: 114 SCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKP--ASHEVFGESTAIL 171
+ L E E + T L + L +L+N K S + S ++
Sbjct: 192 AETL---SELIRTTLDA--EKVFTQGL--NILEWLENPSNTPDKDYLLSIPI---SCPLI 241
Query: 172 AGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGV-EGLVAG----------EFVDI 220
++ LA V + G +P + + + A G +GLV F
Sbjct: 242 G---VIQLAHYVVTAKLLGFTPGELR---SYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 221 ASEGKDVSLKELEYI--HVHKTA--KLLEAAVVCGAVIGGGNAIEVERVRNY-ARCIGLL 275
+ + L +I ++ L +++ ++ E V + L
Sbjct: 296 VRKA----ITVLFFIGVRCYEAYPNTSLPPSILEDSLENN------EGVPSPMLSISNLT 345
Query: 276 FQVVDDILDVTKSSEELGKTAGKDLA--------SGKATYPK-LMGIENA--KSFAGELL 324
+ V D ++ T S GK L SG P+ L G+ K+ A L
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQSLYGLNLTLRKAKAPSGL 402
Query: 325 GQA 327
Q+
Sbjct: 403 DQS 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 66/243 (27%)
Query: 13 STLFRNPINDFKKSPYRAPIFRFKLFSKKIKARHAQNSVF-ESTDIPLPTF-------PF 64
+T+ + +N + + YR F S VF S IP
Sbjct: 356 TTIIESSLNVLEPAEYRK---MFDRLS-----------VFPPSAHIPTILLSLIWFDVIK 401
Query: 65 EEYMIRKAEQVNKAL-------------DEAVVLQPPVK----IHKAM--RYSLLAGGKR 105
+ M+ + +L + L+ ++ +H+++ Y++
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--- 458
Query: 106 VRPLLCIASCELVGGDESWA------MPAACALEMIHTMSLIHDDLPFLDNDERRRSKPA 159
D+ + + E + ++ D FL+ R S
Sbjct: 459 ----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA- 513
Query: 160 SHEVFGESTAILAGDALLSLAL--EHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEF 217
+ S +IL + L L ++ N +R+V AI + + E L+ ++
Sbjct: 514 ----WNASGSIL--NTLQQLKFYKPYICDNDP--KYERLVNAILDFLPKIE-ENLICSKY 564
Query: 218 VDI 220
D+
Sbjct: 565 TDL 567
Score = 43.3 bits (101), Expect = 1e-04
Identities = 47/338 (13%), Positives = 99/338 (29%), Gaps = 95/338 (28%)
Query: 25 KSPYRAPIFRFKLFSKKIKARHAQNSVFESTDIPLPTFPFEEYMIRKAEQVNKALDEAVV 84
K+ R P +++ ++ + N VF ++ + ++ +AL E
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL---------QPYLKLRQALLE--- 146
Query: 85 LQPP--VKIHKAMRYSLLAG-GKRVRPLLCIASCELVGGDES----------WAMPAACA 131
L+P V I + G GK + + C W C
Sbjct: 147 LRPAKNVLID-GV-----LGSGKTW---VALDVCL----SYKVQCKMDFKIFWLNLKNCN 193
Query: 132 -----LEMIHTMSLIHDDLPFLDNDERRRSKPAS-HEVFGESTAILAG----DALLSLAL 181
LEM+ + D + + + H + E +L + L L L
Sbjct: 194 SPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVL 250
Query: 182 EHVAVNIAGVSPDRVVRAIAEMC-------SAMGVEGLVAGEFVDIASEGKDVSLKELE- 233
+V + + A C + L A I+ + ++L E
Sbjct: 251 LNVQ------NA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 234 ------YIHVHKTAKLLEAAVVCG----AVIGGGNAIEVERVRNYARCIGL--LFQVVDD 281
Y+ + L + ++I + N+ + L +++
Sbjct: 304 KSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIES 361
Query: 282 ILDVTKSSEELGKTAGKDLASGKATYPKLMGI--ENAK 317
L+V + +E + + +L + +A
Sbjct: 362 SLNVLEPAEY------------RKMFDRL-SVFPPSAH 386
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 29.7 bits (66), Expect = 0.72
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 43 KARHAQNSVFESTDIPLP--TFPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLL 100
K R Q V + T + + + N + + L+P ++ RY L
Sbjct: 73 KGRVMQIIVKGKNVDLISETTVELYS-LAERCRKNNGKTEIWLELKPQGRMLMNARYFLE 131
Query: 101 AGGKR 105
G
Sbjct: 132 MSGPS 136
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 30.2 bits (68), Expect = 0.90
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 214 AGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYA 269
A +F+D A + ++E IH + K + A+ +E V++YA
Sbjct: 270 AHKFIDKALD----IVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVLEKRIVKSYA 321
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 29.1 bits (66), Expect = 2.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRY 97
P + + ++ E + K LDE P K + RY
Sbjct: 67 PIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRY 101
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.1 bits (65), Expect = 2.5
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 191 VSPDRVVRAIAEMCSAMGV---EGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAA 247
+ A A MGV G G V + E DV + + + A
Sbjct: 158 AHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCA 217
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B*
1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B
3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E
1vou_E 1vow_E 1voy_E ...
Length = 211
Score = 28.3 bits (64), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 189 AGVSPDRVV---RAIAEMCSAMGVEGLVAGEFVDIA--SEGK 225
AGV+P R++ R A ++ V+ GE +D S+GK
Sbjct: 70 AGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGK 111
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 28.7 bits (65), Expect = 3.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 63 PFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRY 97
P ++ +A +V K LD+ P K + A RY
Sbjct: 72 PIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRY 106
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 28.3 bits (64), Expect = 5.1
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 27/94 (28%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG-------------LL-----------FQVV 279
A+ G V+ G A+EV + Y + LL F +
Sbjct: 393 AIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQ 452
Query: 280 DDILDVTKSSEELGKTAGKDLASGKATYPKLMGI 313
+ ++ V E G+ G DL +G+ GI
Sbjct: 453 ETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGI 486
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 27.9 bits (63), Expect = 6.7
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
+ GG E+ V A+ I
Sbjct: 394 TTKETRTVLGGGCAEMVMSKAVDTEAQNID 423
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 27.5 bits (62), Expect = 8.2
Identities = 4/30 (13%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
++ ++ GG A E+ + ++ +
Sbjct: 389 VLLDPQLVPGGGASEMAVAHALTEKSKAMT 418
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 27.5 bits (62), Expect = 8.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
V +I GG A E+E R+ AR +
Sbjct: 404 LVKERGLIAGGGAPEIEISRRLSKEARSME 433
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 27.5 bits (62), Expect = 8.7
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
V + GG E+ V A
Sbjct: 387 TVKDSRTVYGGGCSEMLMAHAVTQLASRTP 416
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 27.5 bits (62), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
V A+I GG A E+E R+ Y+R +
Sbjct: 394 LVKKRALIAGGGAPEIELALRLTEYSRTLS 423
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 27.5 bits (62), Expect = 8.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
+ G V+ GG + EVE R+ YA +
Sbjct: 352 VIEDGKVVVGGGSSEVELSLRLSEYASTLK 381
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
V V+ GG A EV V A
Sbjct: 433 LVKDSRVVYGGGAAEVTMSLAVSEEADKQR 462
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 27.1 bits (61), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
+ G ++ GG + EVE ++R YA I
Sbjct: 394 TIEDGRIVSGGGSTEVELSMKLREYAEGIS 423
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 27.1 bits (61), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
+ GAV+ G A E+E R+ YA+ +G
Sbjct: 401 VMEDGAVLPAGGAPEIELAIRLDEYAKQVG 430
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E
2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E
2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Length = 206
Score = 26.7 bits (60), Expect = 9.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 189 AGVSPDRVV---RAIAEMCSAMGVEGLVAGEFVDIA--SEGK 225
AGV P R++ R + VE GE VD+ S+G+
Sbjct: 70 AGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGR 111
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 27.1 bits (61), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
+ G I GG A+E+E ++R YA +G
Sbjct: 408 VIKDGRAIAGGGAVEIEIAKKLRKYAPQVG 437
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 27.1 bits (61), Expect = 9.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 247 AVVCGAVIGGGNAIEVE---RVRNYARCIG 273
A+ GA GG A E R+R+YA+ IG
Sbjct: 399 ALEDGAYAAGGGATAAEIAFRLRSYAQKIG 428
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,477,793
Number of extensions: 350514
Number of successful extensions: 1212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1048
Number of HSP's successfully gapped: 92
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)