RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037716
(354 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 200 bits (508), Expect = 1e-62
Identities = 112/295 (37%), Positives = 159/295 (53%), Gaps = 6/295 (2%)
Query: 64 FEEYMIRKAEQVNKALDEAVVLQP--PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
F + + +Q N+AL + P + + M+Y L GGKR+RP L A+ + G
Sbjct: 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVS 62
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
+ A A+E IH SLIHDDLP +D+D+ RR P H FGE+ AILAGDAL +LA
Sbjct: 63 TNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122
Query: 182 EHVA-VNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKT 240
++ ++ VS + I+E+ SA G+ G+ G+ +D+ +EGK V L LE IH HKT
Sbjct: 123 SILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKT 182
Query: 241 A-KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKD 299
+ A + G + + YA IGL FQV DDILDV + LGK G D
Sbjct: 183 GALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 242
Query: 300 LASGKATYPKLMGIENAKSFAGELLGQAIEELAYF--EASKAAPLYFLANYIASR 352
GK+TYP L+G+E A+ A +L+ A + L ++ + L LA+YI R
Sbjct: 243 QQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 177 bits (450), Expect = 3e-54
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 5/292 (1%)
Query: 62 FPFEEYMIRKAEQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGD 121
P + + +++ A++++V ++ ++M YSL AGGKR+RP+L + + + + +
Sbjct: 3 LPMNKLIDEVNNELSVAINKSV---MDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTE 59
Query: 122 ESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLAL 181
M +A ALEMIHT SLIHDDLP +DND+ RR K +H+V+GE TAILAGDALL+ A
Sbjct: 60 YELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119
Query: 182 EHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTA 241
E ++ + ++ + ++ + + A G G+V G+ +D+ SEG+ + L+ LE IH KT
Sbjct: 120 ELIS-SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTG 178
Query: 242 KLLEAAVVCGAVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLA 301
LL AV+ A I + E + +Y+ +G++FQ+ DD+LD +LGK G DL
Sbjct: 179 ALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLE 238
Query: 302 SGKATYPKLMGIENAKSFAGELLGQAIEELAYF-EASKAAPLYFLANYIASR 352
+ K+TY L+G + A+ A++EL E L + + SR
Sbjct: 239 NNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSR 290
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 106 bits (264), Expect = 3e-27
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 21/269 (7%)
Query: 73 EQVNKALDEAVVLQPPVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDESW-AMPAACA 131
E+V + +++ + + + L GK +R L I S + G + A+ + A
Sbjct: 6 EKVKERIEQIL----SQFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAA 61
Query: 132 LEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGV 191
LE++H SL+HDD+ D RR K + ++G+ A+ AGD +L A V
Sbjct: 62 LELVHLASLLHDDVI--DGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNK 119
Query: 192 SPDRVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCG 251
+ I +M E ++ S K ++ +E I K+ L A+
Sbjct: 120 LRRAFLNVIGKMSE---------AELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLP 170
Query: 252 AVIGGGNAIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLM 311
A++ G E + N IG ++Q+ DDI+D E++GK DL +G A++P +
Sbjct: 171 ALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVT 226
Query: 312 GIENAKSFAGELLGQAIEEL-AYFEASKA 339
+E + L ++
Sbjct: 227 AMEKFPEARQMFENRDWSGLMSFMREKGI 255
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 106 bits (265), Expect = 3e-27
Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 15/248 (6%)
Query: 91 IHKAMRYSLLAGGKRVRPLLCIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDN 150
+ + +Y L GK+VR L A + E EM+H SL+ DD+ DN
Sbjct: 7 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE--DN 64
Query: 151 DERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVE 210
+ RR P +H ++G + I + + + L LE V + R + E+ G++
Sbjct: 65 SKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLD 124
Query: 211 GLVAGEFVDIASEGKDVSLKELEYIHVHKTAKLLEAAVVCGAVIGGGNAIEVERVRNYAR 270
+ E EY + + G + + E ++
Sbjct: 125 IYWRDNYTCPTEE---------EYKAMVLQKTGGLFGLAVGLMQ--LFSDYKEDLKPLLN 173
Query: 271 CIGLLFQVVDDILDVTKSSEELGKTAGKDLASGKATYPKLMGIENAKSFAG--ELLGQAI 328
+GL FQ+ DD ++ K+ +DL GK ++P + I + +L Q
Sbjct: 174 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT 233
Query: 329 EELAYFEA 336
E + +
Sbjct: 234 ENIDIKKY 241
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 99.3 bits (246), Expect = 4e-24
Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 21/274 (7%)
Query: 73 EQVNKALDEAVVLQP-----PVKIHKAMRYSLLAGGKRVRPLLCIASCELVGGDES---- 123
Q+ + L E + P ++ + ++Y+ GGK R L +A+ + G
Sbjct: 17 PQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAE 75
Query: 124 ---WAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAILAGDALLSLA 180
A+ +E+ L+ DD+ D RR + ++ G + LL +
Sbjct: 76 SLRCALAVGWCIELFQAFFLVADDIM--DQSLTRRGQLCWYKKEGVGLDAINDSFLLESS 133
Query: 181 LEHVAVNIAGVSPD--RVVRAIAEMCSAMGVEGLVAGEFVDIASEGKDVSLKE--LEYIH 236
+ V P ++ + + ++ ++ +E +
Sbjct: 134 VYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVK 193
Query: 237 VHKTAKLLEAAVVCGAVIGGGN-AIEVERVRNYARCIGLLFQVVDDILDVTKSSEELGKT 295
V + G + E E + +G FQ+ DD LD GK
Sbjct: 194 YKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKV 253
Query: 296 AGKDLASGKATYPKLMGIENAKSFAGELLGQAIE 329
K ++ + ++ +LL
Sbjct: 254 GTDI-QDNKCSWLVVQCLQRVTPEQRQLLEDNYG 286
>d1m3ya1 b.121.2.3 (A:25-221) Major capsid protein vp54 {Paramecium
bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Length = 197
Score = 27.9 bits (61), Expect = 1.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 147 FLDNDERRR 155
FLD ER R
Sbjct: 186 FLDTQERTR 194
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
missouriensis [TaxId: 1866]}
Length = 392
Score = 27.6 bits (61), Expect = 2.5
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 142 HDD--LPFLDNDERRRSKPASHEVFGESTAILAGDALLSLALEHVAVNIAGVSPDRVVR- 198
HDD +PF + + R A + + T ++ +L V + S DR VR
Sbjct: 52 HDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRR 111
Query: 199 -AIAEMCSAMGV 209
AI ++ M +
Sbjct: 112 YAIRKVLRQMDL 123
>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA
{Vibrio harveyi [TaxId: 669]}
Length = 355
Score = 27.1 bits (58), Expect = 3.4
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 3/103 (2%)
Query: 111 CIASCELVGGDESWAMPAACALEMIHTMSLIHDDLPFLDNDERRRSKPASHEVFGESTAI 170
C++ V D + A S ++ F D+D+ + +
Sbjct: 225 CLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRDFVLK- 283
Query: 171 LAGDALLSLALEHVAVNIAGVSPDRVVRAIAEMCSAMGVEGLV 213
+N G +P+ + I + A G++ +
Sbjct: 284 -GHKDTNRRIDYSYEINPVG-TPEECIAIIQQDIDATGIDNIC 324
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,280,248
Number of extensions: 60089
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 9
Length of query: 354
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,226,816
Effective search space: 328786688
Effective search space used: 328786688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)