BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037717
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 266/561 (47%), Positives = 351/561 (62%), Gaps = 49/561 (8%)
Query: 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY---------------EPR 105
R+ LP++ +E L+ ++ VGETGSGKTTQIPQ++ +PR
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 106 WVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESY 165
VAAMSVA RV++EM VKLG EVGYSIRFE+ TS+KT+LKYMTD MLLRE + + L Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 166 SVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFGSAPIFKIPG 225
S +I+DEA ERTL+TD L GLLK ++ RPDLK++I SATLDAEKF YF AP+ +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 226 RRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQ---- 281
R YPVEL+YT + DY+++AI T LQIH E GDIL+FLTG+DEIE A +
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 282 --RTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-----ARKVVLATNIAETSLTI 334
R G G L + P+Y +LP Q +IFEP PE RKVV++TNIAETSLTI
Sbjct: 330 LVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNY 394
DGI YV+ PGF+K K YNP+ +ESLLV+PISKASA QR G + RT PGKCFRLYT +
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 395 HRIWMTILCQKYNELIWKMLS--------LFSNVLVNFDFIDPPXXXXXXXXXXXXXXXG 446
+ ++ Q Y E++ LS L + LV+FDF+DPP
Sbjct: 446 QK---ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLA 502
Query: 447 ALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDK 506
L+ G LT +GR ++FP+DP L+ ++ +++CS EI+TI AML V N +F RP
Sbjct: 503 CLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKD 561
Query: 507 QIYADNARMNFHLGDVGDRIALLRVYNCWRE---CNYST-EWCRENYIQVSSMKRARDIR 562
+ AD+A+ F D GD I LL VY+ ++ Y +WCR++Y+ S+ A +IR
Sbjct: 562 KKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIR 620
Query: 563 DQLEGLFAR--VEIDTSIYSN 581
QLE L R +E++T+ Y +
Sbjct: 621 SQLERLMNRYNLELNTTDYES 641
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 266/561 (47%), Positives = 351/561 (62%), Gaps = 49/561 (8%)
Query: 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY---------------EPR 105
R+ LP++ +E L+ ++ VGETGSGKTTQIPQ++ +PR
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 106 WVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESY 165
VAAMSVA RV++EM VKLG EVGYSIRFE+ TS+KT+LKYMTD MLLRE + + L Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 166 SVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFGSAPIFKIPG 225
S +I+DEA ERTL+TD L GLLK ++ RPDLK++I SATLDAEKF YF AP+ +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 226 RRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQ---- 281
R YPVEL+YT + DY+++AI T LQIH E GDIL+FLTG+DEIE A +
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 282 --RTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-----ARKVVLATNIAETSLTI 334
R G G L + P+Y +LP Q +IFEP PE RKVV++TNIAETSLTI
Sbjct: 330 LVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNY 394
DGI YV+ PGF+K K YNP+ +ESLLV+PISKASA QR G + RT PGKCFRLYT +
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 395 HRIWMTILCQKYNELIWKMLS--------LFSNVLVNFDFIDPPXXXXXXXXXXXXXXXG 446
+ ++ Q Y E++ LS L + LV+FDF+DPP
Sbjct: 446 QK---ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLA 502
Query: 447 ALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDK 506
L+ G LT +GR ++FP+DP L+ ++ +++CS EI+TI AML V N +F RP
Sbjct: 503 CLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKD 561
Query: 507 QIYADNARMNFHLGDVGDRIALLRVYNCWRE---CNYST-EWCRENYIQVSSMKRARDIR 562
+ AD+A+ F D GD I LL VY+ ++ Y +WCR++Y+ S+ A +IR
Sbjct: 562 KKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIR 620
Query: 563 DQLEGLFAR--VEIDTSIYSN 581
QLE L R +E++T+ Y +
Sbjct: 621 SQLERLMNRYNLELNTTDYES 641
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 88/130 (67%), Gaps = 2/130 (1%)
Query: 446 GALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKD 505
GAL+ G LTR+GR+MAEFP++P L K ++ CS+E++TI +ML V N +FYRPKD
Sbjct: 31 GALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKD 89
Query: 506 KQIYADNARMNFHLGDVGDRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQL 565
KQ AD + FH + GD + LL VYN W+ +S WC EN+IQ S++RA+DIR Q+
Sbjct: 90 KQALADQKKAKFHQTE-GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM 148
Query: 566 EGLFARVEID 575
G+ R ++D
Sbjct: 149 LGIMDRHKLD 158
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 20/188 (10%)
Query: 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----------- 102
L+ + +ER+ LP+ F E+L+A+S V+ I G TG GKTTQ+PQ++
Sbjct: 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAE 109
Query: 103 ------EPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC-TSDKTVLKYMTDCMLLRE 155
+PR ++A+SVA RV+ E G + G GYS+RFE + + T +LLR+
Sbjct: 110 CNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRK 169
Query: 156 IVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYF 215
+ E + S +IVDE ER ++TD L +L+D++ P++++++ SAT+D F +YF
Sbjct: 170 L--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYF 227
Query: 216 GSAPIFKI 223
+ PI ++
Sbjct: 228 FNCPIIEV 235
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYL--------YEPRWVAAMSVAAR 115
+ + P ++ ++ V+G P L + G GSGKT I + Y+ R +AA++ +
Sbjct: 1 MRLNPGQQQAVEFVTG-PCLVLAG-AGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNK 58
Query: 116 VSQEMGVKLGHEVG 129
++EM ++G +G
Sbjct: 59 AAREMKERVGQTLG 72
>pdb|1CEV|A Chain A, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|B Chain B, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|C Chain C, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|D Chain D, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|E Chain E, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|F Chain F, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|2CEV|A Chain A, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|B Chain B, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|C Chain C, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|D Chain D, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|E Chain E, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|F Chain F, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|3CEV|A Chain A, Arginase From Bacillus Caldevelox, Complexed With
L-arginine
pdb|3CEV|B Chain B, Arginase From Bacillus Caldevelox, Complexed With
L-arginine
pdb|3CEV|C Chain C, Arginase From Bacillus Caldevelox, Complexed With
L-arginine
pdb|3CEV|D Chain D, Arginase From Bacillus Caldevelox, Complexed With
L-arginine
pdb|3CEV|E Chain E, Arginase From Bacillus Caldevelox, Complexed With
L-arginine
pdb|3CEV|F Chain F, Arginase From Bacillus Caldevelox, Complexed With
L-arginine
pdb|4CEV|A Chain A, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|B Chain B, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|C Chain C, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|D Chain D, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|E Chain E, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|F Chain F, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|5CEV|A Chain A, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|B Chain B, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|C Chain C, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|D Chain D, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|E Chain E, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|F Chain F, Arginase From Bacillus Caldevelox, L-Lysine Complex
Length = 299
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 325 TNIAETSLT--IDGIKYVI-----HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLS 377
N AETS + I G+ HP ++ Y+PK E +++ + ++ +
Sbjct: 127 VNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIR 186
Query: 378 ERTGPGKCFRLYTLHNYHRIWMTILCQK 405
E K ++YT+H R+ MT + ++
Sbjct: 187 E-----KGIKIYTMHEVDRLGMTRVMEE 209
>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|B Chain B, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|D Chain D, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|E Chain E, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
Length = 361
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 25 DFFSESVFDGDNFDEFESELPNKSVVKSTLEMLQEERKTLPIYP--FWEELLQAVSGYPV 82
D ++E VF G ++ S + + KS L + E K L +YP + L +++ Y
Sbjct: 16 DIYTEGVFKGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLK 75
Query: 83 L---AIVGETGSGKTTQIPQYLYEPRWVAAMSVA 113
L IV G+ + ++ L+E + S A
Sbjct: 76 LKDIGIVLGNGASEIIELSISLFEKILIIVPSYA 109
>pdb|2H3B|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
pdb|2H3B|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
Length = 494
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 166 TNSREQKKILAKYLXETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 217
>pdb|2GVJ|A Chain A, Crystal Structure Of Human Nmprtase In Complex With Fk866
pdb|2GVJ|B Chain B, Crystal Structure Of Human Nmprtase In Complex With Fk866
Length = 491
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 163 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 214
>pdb|2GVG|A Chain A, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|B Chain B, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|C Chain C, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|D Chain D, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|E Chain E, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|F Chain F, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
Length = 491
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 163 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 214
>pdb|3DGR|A Chain A, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DGR|B Chain B, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DHD|A Chain A, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHD|B Chain B, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHF|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DHF|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DKJ|A Chain A, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKJ|B Chain B, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKL|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
pdb|3DKL|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
Length = 484
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 163 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 214
>pdb|2H3D|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
pdb|2H3D|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
Length = 494
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 166 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 217
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 163 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 214
>pdb|2GVL|A Chain A, Crystal Structure Of Murine Nmprtase
pdb|2GVL|B Chain B, Crystal Structure Of Murine Nmprtase
Length = 491
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 163 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 214
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 314 TPERARKVVLATNIAETSLTIDGIKYVIHP-GFAKVKSY-NPKTGMESLLVN 363
T R +K +LA + ETS +DG++Y +H G+ V S G + LVN
Sbjct: 171 TNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,503,269
Number of Sequences: 62578
Number of extensions: 660265
Number of successful extensions: 1776
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 20
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)