Query 037717
Match_columns 582
No_of_seqs 448 out of 2819
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923 mRNA splicing factor A 100.0 2E-147 3E-152 1143.9 44.8 572 5-581 192-799 (902)
2 KOG0922 DEAH-box RNA helicase 100.0 4E-133 8E-138 1050.2 48.2 528 50-580 36-582 (674)
3 KOG0924 mRNA splicing factor A 100.0 2E-130 4E-135 1017.5 42.7 525 55-581 346-889 (1042)
4 KOG0925 mRNA splicing factor A 100.0 2E-124 5E-129 942.6 44.5 525 48-579 30-578 (699)
5 COG1643 HrpA HrpA-like helicas 100.0 2E-109 5E-114 919.6 49.2 518 52-574 37-589 (845)
6 KOG0920 ATP-dependent RNA heli 100.0 2E-106 3E-111 892.1 39.9 525 51-578 159-741 (924)
7 PRK11131 ATP-dependent RNA hel 100.0 2E-104 3E-109 909.1 51.7 510 59-579 68-611 (1294)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-102 3E-107 896.1 51.9 511 58-579 60-602 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 3E-101 6E-106 811.2 42.4 519 52-573 243-920 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-87 3.2E-92 757.4 43.3 427 64-496 1-444 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 8.2E-85 1.8E-89 736.8 42.4 427 63-495 3-448 (812)
12 KOG0921 Dosage compensation co 100.0 3.5E-62 7.5E-67 520.2 19.9 519 52-575 365-967 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 3E-59 6.5E-64 516.2 37.0 377 68-480 167-596 (675)
14 PRK01172 ski2-like helicase; P 100.0 3.2E-44 6.9E-49 406.5 40.2 482 63-566 20-578 (674)
15 PRK02362 ski2-like helicase; P 100.0 2E-43 4.4E-48 402.8 38.3 502 54-572 12-624 (737)
16 PRK00254 ski2-like helicase; P 100.0 1E-39 2.2E-44 371.5 39.6 500 52-572 10-615 (720)
17 KOG0331 ATP-dependent RNA heli 100.0 6.7E-39 1.5E-43 337.0 24.1 308 59-397 108-453 (519)
18 PRK11776 ATP-dependent RNA hel 100.0 1.1E-37 2.4E-42 338.7 30.1 298 65-395 26-352 (460)
19 COG1202 Superfamily II helicas 100.0 5.4E-38 1.2E-42 323.4 25.9 427 43-504 194-689 (830)
20 KOG0330 ATP-dependent RNA heli 100.0 9.7E-38 2.1E-42 309.1 22.1 300 62-395 81-410 (476)
21 COG1204 Superfamily II helicas 100.0 1.1E-36 2.4E-41 341.1 33.5 482 65-565 31-630 (766)
22 PTZ00110 helicase; Provisional 100.0 1.1E-36 2.5E-41 335.0 30.3 331 33-395 121-487 (545)
23 PLN00206 DEAD-box ATP-dependen 100.0 5.5E-36 1.2E-40 328.5 28.2 299 64-395 142-478 (518)
24 PRK04837 ATP-dependent RNA hel 100.0 6.5E-36 1.4E-40 321.4 26.9 297 65-395 30-365 (423)
25 PRK10590 ATP-dependent RNA hel 100.0 9.1E-36 2E-40 322.7 27.8 301 62-395 20-355 (456)
26 PRK11192 ATP-dependent RNA hel 100.0 1.8E-35 3.9E-40 319.2 29.6 312 53-396 11-356 (434)
27 PRK11634 ATP-dependent RNA hel 100.0 1.8E-35 3.8E-40 328.7 29.3 305 58-394 21-354 (629)
28 PRK01297 ATP-dependent RNA hel 100.0 3.6E-35 7.8E-40 320.0 28.2 307 53-393 97-443 (475)
29 TIGR03817 DECH_helic helicase/ 100.0 7.7E-35 1.7E-39 329.5 31.7 316 52-391 23-385 (742)
30 PTZ00424 helicase 45; Provisio 100.0 4.1E-35 8.8E-40 313.5 26.4 300 65-396 50-378 (401)
31 COG0513 SrmB Superfamily II DN 100.0 4.2E-35 9.1E-40 319.8 26.7 309 52-392 39-380 (513)
32 KOG0333 U5 snRNP-like RNA heli 100.0 6.1E-36 1.3E-40 305.7 18.7 329 31-394 234-626 (673)
33 PRK04537 ATP-dependent RNA hel 100.0 1.1E-34 2.3E-39 320.5 28.6 297 64-394 30-366 (572)
34 TIGR00614 recQ_fam ATP-depende 100.0 5.3E-34 1.2E-38 309.8 28.7 294 66-396 12-337 (470)
35 PRK11057 ATP-dependent DNA hel 100.0 6.6E-34 1.4E-38 317.2 27.0 308 52-396 11-347 (607)
36 KOG0345 ATP-dependent RNA heli 100.0 9.1E-34 2E-38 286.8 24.6 324 53-407 16-384 (567)
37 PLN03137 ATP-dependent DNA hel 100.0 2.5E-33 5.4E-38 316.0 27.7 296 64-395 459-790 (1195)
38 PRK13767 ATP-dependent helicas 100.0 5.9E-33 1.3E-37 320.1 24.8 308 54-388 22-396 (876)
39 KOG0342 ATP-dependent RNA heli 100.0 3.3E-33 7.1E-38 284.7 19.7 299 64-394 103-439 (543)
40 KOG0336 ATP-dependent RNA heli 100.0 3.9E-33 8.4E-38 277.2 19.5 314 50-397 228-577 (629)
41 TIGR01389 recQ ATP-dependent D 100.0 2.6E-32 5.6E-37 304.9 27.0 293 66-395 14-334 (591)
42 KOG0343 RNA Helicase [RNA proc 100.0 5E-33 1.1E-37 285.6 18.6 301 68-398 94-428 (758)
43 KOG0952 DNA/RNA helicase MER3/ 100.0 1.8E-31 3.8E-36 291.5 30.0 452 70-534 115-683 (1230)
44 KOG0335 ATP-dependent RNA heli 100.0 5E-33 1.1E-37 288.0 16.4 294 69-391 100-443 (482)
45 KOG0340 ATP-dependent RNA heli 100.0 7E-32 1.5E-36 264.7 21.3 313 50-395 14-364 (442)
46 KOG0328 Predicted ATP-dependen 100.0 4.4E-31 9.6E-36 251.6 21.6 313 52-397 37-378 (400)
47 KOG0348 ATP-dependent RNA heli 100.0 5E-31 1.1E-35 270.2 21.1 316 66-399 160-563 (708)
48 KOG0338 ATP-dependent RNA heli 100.0 1.2E-31 2.5E-36 273.4 15.3 290 70-394 208-535 (691)
49 PRK09751 putative ATP-dependen 100.0 5.4E-31 1.2E-35 308.7 22.3 277 85-384 1-375 (1490)
50 COG1201 Lhr Lhr-like helicases 100.0 2.2E-30 4.7E-35 287.1 25.2 295 52-381 10-349 (814)
51 TIGR00580 mfd transcription-re 100.0 1.5E-29 3.2E-34 289.4 29.8 289 63-392 449-770 (926)
52 KOG0332 ATP-dependent RNA heli 100.0 5.2E-30 1.1E-34 252.9 18.9 303 67-398 114-449 (477)
53 KOG0339 ATP-dependent RNA heli 100.0 3.2E-30 6.9E-35 262.5 17.8 296 67-395 247-578 (731)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.3E-29 2E-33 275.6 30.8 285 63-382 13-379 (844)
55 PRK10917 ATP-dependent DNA hel 100.0 6.5E-29 1.4E-33 280.2 29.8 287 64-390 260-587 (681)
56 KOG0341 DEAD-box protein abstr 100.0 7E-31 1.5E-35 259.5 11.3 329 33-395 161-531 (610)
57 TIGR00643 recG ATP-dependent D 100.0 3.9E-29 8.5E-34 280.1 25.5 295 59-390 227-564 (630)
58 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-29 4.9E-34 265.1 20.2 279 82-393 1-337 (358)
59 KOG0947 Cytoplasmic exosomal R 100.0 1.4E-29 3.1E-34 273.7 18.7 349 62-432 294-777 (1248)
60 PRK10689 transcription-repair 100.0 9.1E-29 2E-33 288.6 27.1 290 62-392 597-919 (1147)
61 KOG0326 ATP-dependent RNA heli 100.0 2.4E-29 5.1E-34 243.4 13.8 310 56-399 99-436 (459)
62 COG0514 RecQ Superfamily II DN 100.0 3.8E-28 8.3E-33 260.4 21.8 295 66-395 18-340 (590)
63 KOG0948 Nuclear exosomal RNA h 100.0 2.2E-29 4.7E-34 266.3 11.4 307 64-392 128-539 (1041)
64 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-27 2.4E-32 246.3 22.5 304 64-392 14-481 (542)
65 KOG0347 RNA helicase [RNA proc 100.0 1.2E-29 2.7E-34 260.7 7.7 313 52-394 191-572 (731)
66 TIGR03158 cas3_cyano CRISPR-as 100.0 3.6E-27 7.8E-32 247.1 26.0 276 69-378 1-357 (357)
67 COG4581 Superfamily II RNA hel 100.0 7.2E-28 1.6E-32 270.5 21.0 313 61-391 115-536 (1041)
68 KOG0350 DEAD-box ATP-dependent 100.0 5.8E-28 1.3E-32 246.3 18.4 309 59-395 153-543 (620)
69 COG1205 Distinct helicase fami 100.0 3.9E-27 8.4E-32 268.0 23.8 315 55-392 60-422 (851)
70 KOG0354 DEAD-box like helicase 100.0 5.6E-27 1.2E-31 254.2 22.8 305 61-392 58-529 (746)
71 KOG0951 RNA helicase BRR2, DEA 99.9 2.5E-26 5.4E-31 254.0 26.3 409 66-484 310-836 (1674)
72 KOG0334 RNA helicase [RNA proc 99.9 6.8E-27 1.5E-31 258.1 20.0 327 33-392 356-720 (997)
73 PHA02558 uvsW UvsW helicase; P 99.9 8.4E-26 1.8E-30 247.1 25.4 283 64-384 113-443 (501)
74 KOG0344 ATP-dependent RNA heli 99.9 1.8E-25 3.8E-30 233.4 20.2 309 55-396 149-499 (593)
75 PRK13766 Hef nuclease; Provisi 99.9 1.2E-24 2.7E-29 251.0 28.4 302 62-394 12-481 (773)
76 KOG0346 RNA helicase [RNA proc 99.9 2.5E-25 5.4E-30 223.9 19.5 303 54-393 31-411 (569)
77 KOG4284 DEAD box protein [Tran 99.9 3.4E-25 7.4E-30 231.4 19.2 308 56-392 39-379 (980)
78 PRK09401 reverse gyrase; Revie 99.9 3E-24 6.6E-29 251.4 22.7 270 57-349 72-412 (1176)
79 KOG0327 Translation initiation 99.9 4E-24 8.7E-29 213.2 19.9 309 50-396 34-374 (397)
80 TIGR00603 rad25 DNA repair hel 99.9 2.1E-23 4.7E-28 230.6 25.2 293 63-395 253-610 (732)
81 PRK09694 helicase Cas3; Provis 99.9 6.4E-23 1.4E-27 232.8 24.8 286 65-381 286-663 (878)
82 PRK14701 reverse gyrase; Provi 99.9 4E-23 8.7E-28 246.8 23.0 313 55-395 69-459 (1638)
83 KOG0351 ATP-dependent DNA heli 99.9 2.4E-23 5.2E-28 235.6 18.3 302 65-397 264-597 (941)
84 TIGR03714 secA2 accessory Sec 99.9 4.9E-22 1.1E-26 219.9 27.9 107 257-393 422-538 (762)
85 KOG0352 ATP-dependent DNA heli 99.9 4E-23 8.7E-28 207.1 13.7 295 70-396 25-366 (641)
86 KOG0950 DNA polymerase theta/e 99.9 1.6E-22 3.6E-27 221.0 18.8 313 64-394 222-613 (1008)
87 COG4098 comFA Superfamily II D 99.9 1.9E-21 4.1E-26 190.9 24.1 296 71-407 107-431 (441)
88 TIGR01054 rgy reverse gyrase. 99.9 8.9E-22 1.9E-26 231.1 25.5 272 55-349 68-411 (1171)
89 PRK09200 preprotein translocas 99.9 3.8E-22 8.2E-27 222.8 20.8 107 258-393 427-542 (790)
90 PRK05580 primosome assembly pr 99.9 1.5E-21 3.3E-26 219.6 22.7 299 63-388 142-545 (679)
91 COG1061 SSL2 DNA or RNA helica 99.9 1.4E-21 3E-26 210.1 21.2 284 61-382 32-378 (442)
92 TIGR00963 secA preprotein tran 99.9 2.5E-21 5.5E-26 213.0 21.8 119 244-393 392-518 (745)
93 PRK12898 secA preprotein trans 99.9 5.7E-21 1.2E-25 209.2 23.4 164 198-393 410-587 (656)
94 COG1200 RecG RecG-like helicas 99.9 3.1E-21 6.7E-26 206.9 20.2 296 57-393 252-592 (677)
95 KOG0337 ATP-dependent RNA heli 99.9 9.8E-22 2.1E-26 197.3 13.8 309 52-394 31-370 (529)
96 PRK11448 hsdR type I restricti 99.9 2.4E-20 5.3E-25 217.6 27.4 301 65-390 413-813 (1123)
97 TIGR00595 priA primosomal prot 99.9 2.2E-21 4.8E-26 211.1 17.0 278 84-387 1-376 (505)
98 COG1197 Mfd Transcription-repa 99.8 3.2E-19 6.9E-24 201.3 24.8 287 67-394 596-915 (1139)
99 KOG0349 Putative DEAD-box RNA 99.8 1.5E-20 3.2E-25 188.9 11.9 227 139-390 337-613 (725)
100 KOG0353 ATP-dependent DNA heli 99.8 5.9E-19 1.3E-23 174.8 19.1 279 53-347 81-396 (695)
101 KOG0921 Dosage compensation co 99.8 1.8E-21 3.9E-26 209.7 1.5 497 59-573 400-968 (1282)
102 PRK13104 secA preprotein trans 99.8 1.8E-17 3.9E-22 185.2 24.5 79 244-335 431-509 (896)
103 KOG0949 Predicted helicase, DE 99.8 2.9E-17 6.4E-22 179.2 19.4 150 64-216 510-682 (1330)
104 PRK12906 secA preprotein trans 99.8 4.7E-17 1E-21 181.0 21.5 107 257-392 438-553 (796)
105 PRK12904 preprotein translocas 99.8 5.8E-17 1.3E-21 181.0 22.0 124 257-391 428-572 (830)
106 PRK04914 ATP-dependent helicas 99.7 1.2E-16 2.5E-21 183.2 24.1 117 251-393 485-606 (956)
107 COG1203 CRISPR-associated heli 99.7 4E-17 8.6E-22 185.8 18.3 295 66-392 196-550 (733)
108 PF04408 HA2: Helicase associa 99.7 7.6E-18 1.6E-22 144.0 8.0 92 437-529 1-102 (102)
109 KOG0953 Mitochondrial RNA heli 99.7 1.8E-16 3.9E-21 164.6 16.2 267 79-392 190-477 (700)
110 PRK13107 preprotein translocas 99.7 3.5E-15 7.5E-20 166.6 21.5 79 244-335 436-514 (908)
111 smart00847 HA2 Helicase associ 99.6 4.7E-16 1E-20 130.6 7.6 91 437-529 1-92 (92)
112 KOG0329 ATP-dependent RNA heli 99.6 2.4E-15 5.3E-20 142.4 11.3 274 54-395 54-358 (387)
113 KOG4150 Predicted ATP-dependen 99.6 2.8E-15 6E-20 155.5 12.2 294 57-382 278-629 (1034)
114 PF00270 DEAD: DEAD/DEAH box h 99.6 6.5E-15 1.4E-19 137.7 11.7 143 68-212 2-167 (169)
115 TIGR00631 uvrb excinuclease AB 99.6 1.2E-14 2.7E-19 162.2 15.3 115 257-393 440-554 (655)
116 COG4096 HsdR Type I site-speci 99.6 1.6E-13 3.5E-18 149.8 21.3 280 67-382 167-527 (875)
117 PRK12899 secA preprotein trans 99.6 2.9E-13 6.2E-18 151.6 22.6 112 62-174 87-225 (970)
118 cd00079 HELICc Helicase superf 99.5 4.8E-14 1E-18 125.7 11.5 103 258-387 27-130 (131)
119 PRK05298 excinuclease ABC subu 99.5 1.6E-13 3.4E-18 154.4 15.9 113 258-392 445-557 (652)
120 cd00268 DEADc DEAD-box helicas 99.5 3.9E-13 8.4E-18 129.9 16.2 143 63-207 19-185 (203)
121 TIGR00348 hsdR type I site-spe 99.5 2.5E-12 5.5E-17 145.1 21.4 273 80-384 263-639 (667)
122 PF00271 Helicase_C: Helicase 99.4 7.6E-14 1.7E-18 113.2 5.1 73 291-381 6-78 (78)
123 PLN03142 Probable chromatin-re 99.4 2.3E-11 5E-16 140.6 23.8 112 258-396 486-603 (1033)
124 PRK12900 secA preprotein trans 99.4 2.4E-12 5.3E-17 144.6 14.8 162 197-393 534-712 (1025)
125 COG1198 PriA Primosomal protei 99.4 1E-11 2.3E-16 138.0 18.9 300 63-388 196-599 (730)
126 TIGR02562 cas3_yersinia CRISPR 99.4 5.1E-11 1.1E-15 134.7 24.4 218 141-383 562-882 (1110)
127 COG1110 Reverse gyrase [DNA re 99.4 3.2E-11 6.9E-16 134.0 21.6 268 55-349 72-419 (1187)
128 TIGR01407 dinG_rel DnaQ family 99.4 1.1E-10 2.3E-15 135.9 26.1 183 197-388 596-811 (850)
129 PRK12326 preprotein translocas 99.4 5.8E-11 1.3E-15 130.3 22.0 118 243-391 413-546 (764)
130 KOG0951 RNA helicase BRR2, DEA 99.4 2.5E-11 5.5E-16 136.4 19.0 294 78-390 1157-1492(1674)
131 smart00487 DEXDc DEAD-like hel 99.4 1.5E-11 3.2E-16 116.9 15.0 153 63-218 6-184 (201)
132 cd00046 DEXDc DEAD-like helica 99.3 2.1E-11 4.6E-16 109.0 12.0 123 81-206 1-144 (144)
133 smart00490 HELICc helicase sup 99.3 3.8E-12 8.3E-17 103.4 6.1 72 292-381 11-82 (82)
134 PF07652 Flavi_DEAD: Flaviviru 99.2 3.6E-11 7.7E-16 106.8 9.9 121 78-206 2-136 (148)
135 PRK13103 secA preprotein trans 99.2 5.2E-10 1.1E-14 125.7 19.7 114 60-174 75-212 (913)
136 PRK12903 secA preprotein trans 99.2 2.6E-09 5.5E-14 119.1 21.4 116 244-390 413-537 (925)
137 PRK07246 bifunctional ATP-depe 99.2 9.2E-09 2E-13 118.6 27.0 138 240-391 630-783 (820)
138 CHL00122 secA preprotein trans 99.1 1.7E-09 3.8E-14 121.0 19.2 113 61-174 70-206 (870)
139 PF04851 ResIII: Type III rest 99.0 2.9E-10 6.2E-15 107.4 6.3 136 64-206 2-182 (184)
140 KOG1123 RNA polymerase II tran 99.0 3.8E-09 8.2E-14 109.3 14.4 278 66-382 303-636 (776)
141 PRK12902 secA preprotein trans 99.0 3.5E-08 7.6E-13 110.6 22.1 114 60-174 78-215 (939)
142 COG0556 UvrB Helicase subunit 98.9 2.1E-08 4.5E-13 105.1 14.2 174 196-397 386-561 (663)
143 KOG0385 Chromatin remodeling c 98.9 5.4E-08 1.2E-12 105.6 17.7 115 258-396 486-603 (971)
144 PRK08074 bifunctional ATP-depe 98.9 5.8E-07 1.3E-11 105.6 26.4 143 240-390 734-892 (928)
145 PF02399 Herpes_ori_bp: Origin 98.8 3E-07 6.6E-12 102.2 20.5 280 78-392 47-388 (824)
146 KOG0387 Transcription-coupled 98.7 4.3E-07 9.4E-12 99.2 18.4 113 259-394 546-660 (923)
147 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.7E-05 3.6E-10 88.4 26.9 137 242-391 454-616 (636)
148 PRK14873 primosome assembly pr 98.5 2.1E-06 4.7E-11 96.4 17.1 118 84-213 164-310 (665)
149 KOG0390 DNA repair protein, SN 98.4 9.8E-06 2.1E-10 90.7 18.9 90 291-395 618-710 (776)
150 KOG0384 Chromodomain-helicase 98.3 2.5E-05 5.3E-10 89.4 19.2 117 257-397 697-816 (1373)
151 PRK12901 secA preprotein trans 98.3 8.5E-06 1.8E-10 92.9 14.9 158 198-390 565-739 (1112)
152 COG4889 Predicted helicase [Ge 98.1 5.9E-06 1.3E-10 91.1 8.0 108 260-385 461-577 (1518)
153 PF00448 SRP54: SRP54-type pro 98.0 9.9E-06 2.1E-10 77.7 7.2 113 81-210 2-129 (196)
154 KOG1000 Chromatin remodeling p 98.0 0.0026 5.6E-08 67.0 23.3 112 257-392 490-603 (689)
155 PRK12723 flagellar biosynthesi 97.9 8.6E-05 1.9E-09 78.3 11.3 114 80-216 174-307 (388)
156 PF13401 AAA_22: AAA domain; P 97.9 6.4E-06 1.4E-10 73.3 2.4 102 78-205 2-125 (131)
157 COG0653 SecA Preprotein transl 97.9 0.00012 2.7E-09 82.4 12.9 114 61-174 74-210 (822)
158 KOG0952 DNA/RNA helicase MER3/ 97.8 1.1E-05 2.4E-10 90.8 2.9 200 80-281 943-1175(1230)
159 PRK11889 flhF flagellar biosyn 97.8 0.00017 3.7E-09 75.2 11.1 115 81-216 242-375 (436)
160 PRK06526 transposase; Provisio 97.8 8.3E-05 1.8E-09 74.3 8.5 23 75-97 93-115 (254)
161 TIGR00596 rad1 DNA repair prot 97.7 0.00081 1.8E-08 77.2 16.3 65 141-206 7-72 (814)
162 COG1419 FlhF Flagellar GTP-bin 97.7 0.00039 8.5E-09 72.4 11.6 112 80-214 203-331 (407)
163 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0071 1.5E-07 69.7 22.7 111 63-203 350-474 (744)
164 PF06862 DUF1253: Protein of u 97.6 0.0028 6E-08 67.6 17.8 234 140-397 130-420 (442)
165 PRK14974 cell division protein 97.5 0.00038 8.3E-09 72.1 9.5 118 80-215 140-275 (336)
166 PRK13889 conjugal transfer rel 97.5 0.011 2.4E-07 69.4 22.4 114 62-205 343-470 (988)
167 PRK14722 flhF flagellar biosyn 97.5 0.00044 9.5E-09 72.5 9.8 115 77-211 134-262 (374)
168 PRK08181 transposase; Validate 97.5 0.00082 1.8E-08 67.6 10.7 105 76-217 102-219 (269)
169 PRK12726 flagellar biosynthesi 97.5 0.0004 8.8E-09 72.2 8.6 117 78-215 204-336 (407)
170 PF05729 NACHT: NACHT domain 97.4 0.0019 4.1E-08 59.4 11.8 58 167-224 84-148 (166)
171 PRK05703 flhF flagellar biosyn 97.4 0.0012 2.7E-08 70.8 11.8 115 79-216 220-355 (424)
172 PRK12724 flagellar biosynthesi 97.4 0.0012 2.6E-08 69.9 10.9 114 80-217 223-358 (432)
173 PF00176 SNF2_N: SNF2 family N 97.4 0.00074 1.6E-08 68.8 9.1 118 78-206 23-172 (299)
174 PF13604 AAA_30: AAA domain; P 97.3 0.00039 8.5E-09 66.8 5.4 33 67-99 3-37 (196)
175 cd00009 AAA The AAA+ (ATPases 97.2 0.0012 2.5E-08 59.0 8.1 27 71-97 8-36 (151)
176 PRK06835 DNA replication prote 97.2 0.0016 3.4E-08 67.6 10.0 102 79-216 182-298 (329)
177 TIGR01447 recD exodeoxyribonuc 97.2 0.0013 2.8E-08 73.4 10.0 123 68-204 148-294 (586)
178 PRK11747 dinG ATP-dependent DN 97.2 0.0057 1.2E-07 70.1 14.7 138 240-391 517-674 (697)
179 PF01695 IstB_IS21: IstB-like 97.2 0.00076 1.6E-08 63.7 6.2 107 75-218 42-161 (178)
180 PF13173 AAA_14: AAA domain 97.1 0.00097 2.1E-08 59.3 6.4 38 164-205 61-98 (128)
181 PRK10875 recD exonuclease V su 97.1 0.0012 2.7E-08 73.8 8.4 123 68-204 155-300 (615)
182 PRK13826 Dtr system oriT relax 97.1 0.068 1.5E-06 63.4 22.9 113 63-205 379-505 (1102)
183 TIGR01448 recD_rel helicase, p 97.1 0.0025 5.5E-08 73.1 11.0 39 61-99 319-357 (720)
184 PRK10536 hypothetical protein; 97.1 0.002 4.4E-08 63.7 8.4 38 62-99 56-93 (262)
185 PRK07952 DNA replication prote 97.0 0.0041 8.9E-08 61.6 10.3 55 162-217 160-215 (244)
186 PRK14721 flhF flagellar biosyn 97.0 0.0036 7.8E-08 66.7 10.4 116 78-216 189-324 (420)
187 KOG0392 SNF2 family DNA-depend 97.0 0.0026 5.6E-08 73.4 9.6 116 260-396 1341-1458(1549)
188 PRK08116 hypothetical protein; 97.0 0.0056 1.2E-07 61.8 10.8 100 80-215 114-229 (268)
189 PRK06731 flhF flagellar biosyn 97.0 0.006 1.3E-07 61.3 10.8 117 79-216 74-209 (270)
190 PRK12727 flagellar biosynthesi 97.0 0.0035 7.5E-08 68.1 9.6 50 162-212 426-475 (559)
191 PRK06893 DNA replication initi 97.0 0.0022 4.8E-08 63.1 7.5 49 162-212 89-140 (229)
192 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0043 9.4E-08 60.6 9.5 20 78-97 36-55 (226)
193 PRK14723 flhF flagellar biosyn 96.9 0.0049 1.1E-07 70.0 10.9 110 80-212 185-311 (767)
194 PRK08727 hypothetical protein; 96.9 0.0027 5.8E-08 62.7 7.8 18 80-97 41-58 (233)
195 PRK09183 transposase/IS protei 96.9 0.0059 1.3E-07 61.3 10.0 50 162-215 162-214 (259)
196 PRK10416 signal recognition pa 96.9 0.0066 1.4E-07 62.7 10.6 112 79-208 113-246 (318)
197 TIGR00604 rad3 DNA repair heli 96.9 0.01 2.2E-07 68.3 13.0 185 198-388 443-671 (705)
198 PF09848 DUF2075: Uncharacteri 96.9 0.0021 4.5E-08 67.6 6.8 17 81-97 2-18 (352)
199 smart00382 AAA ATPases associa 96.9 0.0046 9.9E-08 54.4 8.1 18 80-97 2-19 (148)
200 PRK14956 DNA polymerase III su 96.8 0.004 8.6E-08 67.2 8.8 48 159-210 116-163 (484)
201 PRK07003 DNA polymerase III su 96.8 0.0054 1.2E-07 69.1 10.1 49 153-203 108-156 (830)
202 KOG2373 Predicted mitochondria 96.8 0.00018 3.9E-09 72.4 -1.2 115 73-192 266-412 (514)
203 KOG0391 SNF2 family DNA-depend 96.8 0.0093 2E-07 68.5 11.8 116 257-396 1274-1391(1958)
204 PRK06921 hypothetical protein; 96.8 0.0067 1.5E-07 61.1 9.9 19 79-97 116-134 (266)
205 PF13245 AAA_19: Part of AAA d 96.8 0.0018 3.9E-08 51.9 4.5 42 75-116 5-62 (76)
206 PF00004 AAA: ATPase family as 96.8 0.0014 3.1E-08 57.8 4.3 15 83-97 1-15 (132)
207 TIGR02760 TraI_TIGR conjugativ 96.8 0.12 2.7E-06 65.5 22.4 229 63-310 427-679 (1960)
208 COG1199 DinG Rad3-related DNA 96.8 0.02 4.3E-07 65.5 14.4 181 198-390 405-616 (654)
209 TIGR02881 spore_V_K stage V sp 96.7 0.0041 8.9E-08 62.5 7.7 18 80-97 42-59 (261)
210 PRK14961 DNA polymerase III su 96.7 0.0057 1.2E-07 64.6 8.9 47 154-202 109-155 (363)
211 PRK05642 DNA replication initi 96.7 0.0044 9.6E-08 61.2 7.6 95 81-211 46-144 (234)
212 COG0610 Type I site-specific r 96.7 0.026 5.7E-07 66.7 15.2 116 81-206 274-413 (962)
213 PRK06645 DNA polymerase III su 96.7 0.013 2.9E-07 64.1 11.4 25 152-176 116-140 (507)
214 PHA02244 ATPase-like protein 96.7 0.0058 1.3E-07 63.6 8.1 29 69-97 108-136 (383)
215 PRK04296 thymidine kinase; Pro 96.6 0.017 3.7E-07 55.1 10.8 20 80-99 2-21 (190)
216 PRK08084 DNA replication initi 96.6 0.009 1.9E-07 59.1 9.2 19 79-97 44-62 (235)
217 PRK12323 DNA polymerase III su 96.6 0.0092 2E-07 66.3 9.9 47 155-203 115-161 (700)
218 COG2804 PulE Type II secretory 96.6 0.0022 4.8E-08 68.5 5.0 96 63-180 239-341 (500)
219 PRK07994 DNA polymerase III su 96.6 0.0032 7E-08 70.5 6.3 54 153-210 108-161 (647)
220 PRK12402 replication factor C 96.6 0.024 5.1E-07 59.1 12.3 27 71-97 25-53 (337)
221 PRK14957 DNA polymerase III su 96.6 0.0098 2.1E-07 65.7 9.6 50 152-203 107-156 (546)
222 PRK14949 DNA polymerase III su 96.5 0.01 2.2E-07 68.1 9.6 49 159-211 114-162 (944)
223 PRK06995 flhF flagellar biosyn 96.5 0.015 3.3E-07 63.0 10.5 114 79-216 255-389 (484)
224 PRK12377 putative replication 96.5 0.013 2.7E-07 58.4 9.1 19 79-97 100-118 (248)
225 PRK08903 DnaA regulatory inact 96.5 0.021 4.5E-07 56.1 10.6 20 78-97 40-59 (227)
226 PRK14960 DNA polymerase III su 96.5 0.014 3E-07 65.1 9.9 26 72-97 26-54 (702)
227 COG1219 ClpX ATP-dependent pro 96.4 0.0063 1.4E-07 61.1 6.4 66 80-174 97-172 (408)
228 PRK13894 conjugal transfer ATP 96.4 0.003 6.5E-08 65.2 4.3 28 70-97 137-165 (319)
229 TIGR02640 gas_vesic_GvpN gas v 96.4 0.01 2.2E-07 59.7 8.0 31 67-97 8-38 (262)
230 PRK14958 DNA polymerase III su 96.4 0.017 3.7E-07 63.6 10.3 42 159-202 114-155 (509)
231 PRK08691 DNA polymerase III su 96.4 0.017 3.6E-07 64.9 10.3 43 159-203 114-156 (709)
232 PRK14964 DNA polymerase III su 96.4 0.011 2.4E-07 64.3 8.7 48 153-202 105-152 (491)
233 PRK00149 dnaA chromosomal repl 96.4 0.0079 1.7E-07 65.5 7.6 96 81-210 149-257 (450)
234 KOG1803 DNA helicase [Replicat 96.4 0.0054 1.2E-07 66.4 6.0 52 66-117 186-250 (649)
235 PRK14962 DNA polymerase III su 96.4 0.015 3.3E-07 63.3 9.5 25 73-97 26-53 (472)
236 PF13307 Helicase_C_2: Helicas 96.3 0.0038 8.3E-08 58.3 4.2 123 258-389 8-146 (167)
237 PRK11747 dinG ATP-dependent DN 96.3 0.011 2.4E-07 67.7 8.7 35 140-174 218-256 (697)
238 PF00308 Bac_DnaA: Bacterial d 96.3 0.0062 1.3E-07 59.5 5.5 93 81-206 35-140 (219)
239 PRK09111 DNA polymerase III su 96.3 0.027 5.8E-07 63.1 11.1 50 152-203 120-169 (598)
240 TIGR03015 pepcterm_ATPase puta 96.3 0.0079 1.7E-07 60.5 6.4 21 80-100 43-63 (269)
241 TIGR00362 DnaA chromosomal rep 96.3 0.0093 2E-07 64.0 7.3 99 81-213 137-248 (405)
242 PRK08939 primosomal protein Dn 96.3 0.035 7.6E-07 57.1 11.1 104 79-215 155-269 (306)
243 PRK09087 hypothetical protein; 96.3 0.02 4.3E-07 56.3 8.9 41 166-209 89-129 (226)
244 PRK12422 chromosomal replicati 96.3 0.019 4.2E-07 62.1 9.6 94 81-210 142-248 (445)
245 TIGR00064 ftsY signal recognit 96.3 0.024 5.3E-07 57.2 9.7 112 79-208 71-204 (272)
246 PF05496 RuvB_N: Holliday junc 96.2 0.0061 1.3E-07 59.0 5.0 75 81-188 51-126 (233)
247 TIGR01425 SRP54_euk signal rec 96.2 0.025 5.3E-07 60.5 10.0 117 81-215 101-235 (429)
248 PRK07764 DNA polymerase III su 96.2 0.016 3.4E-07 67.2 9.1 44 158-203 114-157 (824)
249 PRK14969 DNA polymerase III su 96.2 0.025 5.5E-07 62.6 10.3 49 153-203 108-156 (527)
250 PRK14952 DNA polymerase III su 96.2 0.025 5.5E-07 63.0 10.1 48 154-203 108-155 (584)
251 PRK14088 dnaA chromosomal repl 96.1 0.02 4.2E-07 62.1 8.7 98 81-212 131-242 (440)
252 COG1484 DnaC DNA replication p 96.1 0.05 1.1E-06 54.4 11.0 107 73-216 98-218 (254)
253 PHA02544 44 clamp loader, smal 96.1 0.055 1.2E-06 55.9 11.7 42 160-203 96-138 (316)
254 CHL00181 cbbX CbbX; Provisiona 96.1 0.037 8E-07 56.4 10.0 18 80-97 59-76 (287)
255 PHA00729 NTP-binding motif con 96.1 0.009 2E-07 58.1 5.2 81 73-173 8-91 (226)
256 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.022 4.7E-07 51.8 7.2 84 77-186 23-109 (144)
257 TIGR02880 cbbX_cfxQ probable R 96.0 0.02 4.3E-07 58.3 7.7 18 80-97 58-75 (284)
258 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.019 4.2E-07 52.7 7.0 90 77-188 22-121 (157)
259 PRK06620 hypothetical protein; 96.0 0.033 7.2E-07 54.2 8.8 39 163-206 84-122 (214)
260 PRK14087 dnaA chromosomal repl 95.9 0.022 4.7E-07 61.9 8.0 81 81-192 142-237 (450)
261 PRK00771 signal recognition pa 95.9 0.027 5.9E-07 60.6 8.6 107 80-206 95-217 (437)
262 TIGR03499 FlhF flagellar biosy 95.9 0.017 3.7E-07 58.7 6.7 21 79-99 193-213 (282)
263 PRK14955 DNA polymerase III su 95.9 0.023 4.9E-07 60.9 8.0 25 153-177 116-140 (397)
264 PRK14951 DNA polymerase III su 95.8 0.022 4.8E-07 63.8 7.7 49 153-203 113-161 (618)
265 PRK09112 DNA polymerase III su 95.8 0.022 4.8E-07 59.7 7.3 27 71-97 33-62 (351)
266 PRK07133 DNA polymerase III su 95.8 0.039 8.4E-07 62.6 9.4 38 151-190 105-142 (725)
267 PRK11331 5-methylcytosine-spec 95.8 0.033 7.2E-07 59.6 8.4 29 69-97 183-211 (459)
268 PRK14963 DNA polymerase III su 95.7 0.058 1.3E-06 59.3 10.3 43 157-201 109-151 (504)
269 PRK04195 replication factor C 95.7 0.066 1.4E-06 58.8 10.6 18 80-97 39-56 (482)
270 PF12340 DUF3638: Protein of u 95.7 0.061 1.3E-06 52.3 9.1 116 57-174 15-182 (229)
271 PF05970 PIF1: PIF1-like helic 95.7 0.023 5.1E-07 60.0 6.8 45 68-112 4-66 (364)
272 PF07517 SecA_DEAD: SecA DEAD- 95.7 0.011 2.4E-07 59.2 4.0 110 62-174 72-207 (266)
273 PRK08451 DNA polymerase III su 95.6 0.089 1.9E-06 58.0 11.2 43 159-203 112-154 (535)
274 PF05621 TniB: Bacterial TniB 95.6 0.028 6E-07 56.9 6.7 34 67-100 39-81 (302)
275 TIGR00959 ffh signal recogniti 95.6 0.061 1.3E-06 57.8 9.7 109 81-206 100-224 (428)
276 PRK10867 signal recognition pa 95.6 0.071 1.5E-06 57.3 10.1 109 81-206 101-225 (433)
277 COG2255 RuvB Holliday junction 95.6 0.024 5.2E-07 56.3 5.9 67 81-180 53-119 (332)
278 PRK14970 DNA polymerase III su 95.6 0.033 7.2E-07 58.9 7.6 26 72-97 28-56 (367)
279 PRK14953 DNA polymerase III su 95.6 0.061 1.3E-06 58.9 9.7 26 151-176 106-131 (486)
280 KOG0388 SNF2 family DNA-depend 95.6 0.091 2E-06 57.9 10.7 116 257-396 1042-1158(1185)
281 TIGR00678 holB DNA polymerase 95.6 0.026 5.6E-07 53.6 6.1 25 153-177 85-109 (188)
282 PRK00440 rfc replication facto 95.5 0.098 2.1E-06 53.9 10.9 17 81-97 39-55 (319)
283 PRK14959 DNA polymerase III su 95.5 0.056 1.2E-06 60.3 9.4 26 72-97 27-55 (624)
284 PRK14965 DNA polymerase III su 95.5 0.034 7.3E-07 62.3 7.8 50 152-203 107-156 (576)
285 PRK14950 DNA polymerase III su 95.5 0.072 1.6E-06 59.9 10.2 22 155-176 111-132 (585)
286 PRK10436 hypothetical protein; 95.4 0.063 1.4E-06 58.3 9.2 34 64-97 200-235 (462)
287 PRK05896 DNA polymerase III su 95.4 0.037 8E-07 61.5 7.4 25 73-97 28-55 (605)
288 PRK00080 ruvB Holliday junctio 95.4 0.023 4.9E-07 59.2 5.5 17 81-97 52-68 (328)
289 TIGR02397 dnaX_nterm DNA polym 95.4 0.1 2.2E-06 54.8 10.4 25 152-176 105-129 (355)
290 PRK14086 dnaA chromosomal repl 95.3 0.045 9.7E-07 60.9 7.8 92 81-206 315-419 (617)
291 PLN03025 replication factor C 95.3 0.097 2.1E-06 54.2 9.8 17 81-97 35-51 (319)
292 PRK07471 DNA polymerase III su 95.3 0.1 2.2E-06 55.0 10.0 53 152-206 129-181 (365)
293 PF13872 AAA_34: P-loop contai 95.3 0.038 8.2E-07 55.8 6.3 125 80-206 62-220 (303)
294 KOG0389 SNF2 family DNA-depend 95.3 0.15 3.2E-06 57.1 11.3 115 258-396 776-892 (941)
295 COG2256 MGS1 ATPase related to 95.2 0.029 6.3E-07 58.3 5.5 37 163-206 103-140 (436)
296 TIGR02688 conserved hypothetic 95.2 0.068 1.5E-06 56.7 8.2 83 75-192 204-289 (449)
297 TIGR02538 type_IV_pilB type IV 95.2 0.027 5.8E-07 63.0 5.6 34 64-97 298-333 (564)
298 PF13086 AAA_11: AAA domain; P 95.2 0.019 4.1E-07 55.9 3.9 33 67-99 3-36 (236)
299 cd03247 ABCC_cytochrome_bd The 95.2 0.067 1.4E-06 50.3 7.5 121 77-211 25-160 (178)
300 PRK03992 proteasome-activating 95.2 0.037 8E-07 59.0 6.4 18 80-97 165-182 (389)
301 TIGR02533 type_II_gspE general 95.1 0.084 1.8E-06 57.8 9.0 35 64-98 224-260 (486)
302 PRK14948 DNA polymerase III su 95.1 0.052 1.1E-06 61.2 7.5 25 73-97 28-55 (620)
303 PRK00411 cdc6 cell division co 95.1 0.091 2E-06 56.0 9.1 22 428-449 335-356 (394)
304 PF02562 PhoH: PhoH-like prote 95.1 0.018 3.8E-07 55.4 3.2 34 64-97 3-36 (205)
305 KOG0989 Replication factor C, 95.0 0.095 2.1E-06 52.7 8.2 19 79-97 56-74 (346)
306 TIGR02782 TrbB_P P-type conjug 95.0 0.024 5.2E-07 58.1 4.3 29 71-99 123-151 (299)
307 cd00071 GMPK Guanosine monopho 95.0 0.14 3.1E-06 46.0 8.8 15 83-97 2-16 (137)
308 PF01637 Arch_ATPase: Archaeal 95.0 0.048 1E-06 53.0 6.2 30 72-101 10-41 (234)
309 cd03222 ABC_RNaseL_inhibitor T 95.0 0.08 1.7E-06 49.9 7.3 80 76-182 21-106 (177)
310 cd03229 ABC_Class3 This class 95.0 0.09 1.9E-06 49.5 7.8 103 77-184 23-137 (178)
311 KOG1969 DNA replication checkp 95.0 0.044 9.6E-07 60.8 6.3 96 65-188 305-412 (877)
312 PF00437 T2SE: Type II/IV secr 95.0 0.017 3.6E-07 58.3 2.9 25 75-99 122-146 (270)
313 PF13555 AAA_29: P-loop contai 94.9 0.019 4.2E-07 43.8 2.4 21 80-100 23-43 (62)
314 COG0593 DnaA ATPase involved i 94.9 0.14 3E-06 54.3 9.6 93 80-206 113-218 (408)
315 PRK13342 recombination factor 94.9 0.069 1.5E-06 57.5 7.7 16 82-97 38-53 (413)
316 cd03228 ABCC_MRP_Like The MRP 94.9 0.077 1.7E-06 49.5 7.0 24 77-100 25-48 (171)
317 PRK13833 conjugal transfer pro 94.9 0.027 5.9E-07 58.1 4.2 26 72-97 136-161 (323)
318 cd03216 ABC_Carb_Monos_I This 94.9 0.12 2.5E-06 48.0 8.1 117 77-215 23-149 (163)
319 PF03266 NTPase_1: NTPase; In 94.9 0.1 2.2E-06 48.7 7.7 30 163-192 94-123 (168)
320 COG0470 HolB ATPase involved i 94.8 0.071 1.5E-06 55.0 7.2 43 159-203 104-146 (325)
321 PF13177 DNA_pol3_delta2: DNA 94.8 0.093 2E-06 48.6 7.2 50 155-206 93-142 (162)
322 cd01130 VirB11-like_ATPase Typ 94.8 0.034 7.4E-07 52.8 4.3 26 74-99 19-44 (186)
323 KOG0738 AAA+-type ATPase [Post 94.8 0.026 5.5E-07 58.3 3.6 101 54-181 220-325 (491)
324 PRK13851 type IV secretion sys 94.8 0.031 6.6E-07 58.3 4.2 28 73-100 155-182 (344)
325 TIGR01650 PD_CobS cobaltochela 94.8 0.043 9.2E-07 56.5 5.2 26 72-97 56-81 (327)
326 PRK10787 DNA-binding ATP-depen 94.7 0.075 1.6E-06 61.6 7.8 90 66-175 327-427 (784)
327 PRK14954 DNA polymerase III su 94.7 0.08 1.7E-06 59.5 7.7 29 548-576 548-576 (620)
328 COG0553 HepA Superfamily II DN 94.7 0.11 2.5E-06 61.2 9.3 112 261-396 713-826 (866)
329 PRK05707 DNA polymerase III su 94.5 0.12 2.6E-06 53.7 8.0 49 152-203 94-143 (328)
330 TIGR02858 spore_III_AA stage I 94.5 0.18 3.8E-06 50.9 8.9 30 71-100 99-131 (270)
331 TIGR03689 pup_AAA proteasome A 94.5 0.084 1.8E-06 57.8 7.0 19 79-97 215-233 (512)
332 cd03115 SRP The signal recogni 94.5 0.19 4.2E-06 46.8 8.7 43 163-206 81-124 (173)
333 smart00489 DEXDc3 DEAD-like he 94.5 0.041 8.9E-07 56.1 4.4 35 62-96 5-43 (289)
334 smart00488 DEXDc2 DEAD-like he 94.5 0.041 8.9E-07 56.1 4.4 35 62-96 5-43 (289)
335 TIGR00635 ruvB Holliday juncti 94.5 0.05 1.1E-06 55.9 5.1 17 81-97 31-47 (305)
336 PTZ00361 26 proteosome regulat 94.5 0.067 1.5E-06 57.6 6.1 19 79-97 216-234 (438)
337 PRK07940 DNA polymerase III su 94.5 0.48 1E-05 50.5 12.5 51 152-205 105-155 (394)
338 PRK13900 type IV secretion sys 94.5 0.038 8.3E-07 57.4 4.1 26 74-99 154-179 (332)
339 CHL00176 ftsH cell division pr 94.4 0.06 1.3E-06 60.8 5.9 17 81-97 217-233 (638)
340 cd03246 ABCC_Protease_Secretio 94.3 0.13 2.9E-06 48.1 7.1 24 77-100 25-48 (173)
341 PRK05563 DNA polymerase III su 94.3 0.19 4.1E-06 56.1 9.5 36 152-189 107-142 (559)
342 KOG0745 Putative ATP-dependent 94.3 0.099 2.1E-06 54.9 6.6 17 80-96 226-242 (564)
343 TIGR00763 lon ATP-dependent pr 94.3 0.12 2.7E-06 60.1 8.2 19 79-97 346-364 (775)
344 COG2805 PilT Tfp pilus assembl 94.2 0.029 6.3E-07 56.2 2.5 19 79-97 124-142 (353)
345 PRK06647 DNA polymerase III su 94.2 0.14 3.1E-06 57.0 8.1 21 156-176 111-131 (563)
346 TIGR02524 dot_icm_DotB Dot/Icm 94.2 0.043 9.3E-07 57.7 3.8 25 73-97 126-151 (358)
347 COG0396 sufC Cysteine desulfur 94.1 0.048 1E-06 52.7 3.7 49 164-216 162-211 (251)
348 PRK05342 clpX ATP-dependent pr 94.1 0.1 2.2E-06 55.9 6.5 18 80-97 108-125 (412)
349 COG1618 Predicted nucleotide k 94.1 0.17 3.7E-06 46.3 6.8 16 82-97 7-22 (179)
350 PF05127 Helicase_RecD: Helica 94.1 0.035 7.5E-07 52.1 2.5 103 84-206 1-123 (177)
351 COG0466 Lon ATP-dependent Lon 94.1 0.17 3.6E-06 56.5 8.1 89 66-174 328-427 (782)
352 PRK14971 DNA polymerase III su 94.0 0.26 5.6E-06 55.7 9.9 24 154-177 111-134 (614)
353 TIGR00376 DNA helicase, putati 94.0 0.086 1.9E-06 59.8 6.1 55 65-119 157-224 (637)
354 COG1126 GlnQ ABC-type polar am 93.9 0.03 6.5E-07 53.6 1.8 21 77-97 25-45 (240)
355 KOG0737 AAA+-type ATPase [Post 93.9 0.12 2.6E-06 53.3 6.2 110 77-211 124-244 (386)
356 PRK13341 recombination factor 93.9 0.13 2.8E-06 59.0 7.2 17 81-97 53-69 (725)
357 PF01443 Viral_helicase1: Vira 93.9 0.071 1.5E-06 52.2 4.6 18 83-100 1-18 (234)
358 PRK06305 DNA polymerase III su 93.8 0.18 4E-06 54.7 8.0 26 72-97 28-56 (451)
359 cd03230 ABC_DR_subfamily_A Thi 93.8 0.1 2.3E-06 48.8 5.4 24 77-100 23-46 (173)
360 PF10443 RNA12: RNA12 protein; 93.8 0.1 2.2E-06 55.2 5.6 53 164-216 148-204 (431)
361 PF00580 UvrD-helicase: UvrD/R 93.8 0.076 1.6E-06 54.3 4.7 53 67-121 2-70 (315)
362 cd03239 ABC_SMC_head The struc 93.8 0.21 4.4E-06 47.1 7.2 116 82-204 24-156 (178)
363 TIGR01243 CDC48 AAA family ATP 93.7 0.12 2.5E-06 60.0 6.6 20 78-97 210-229 (733)
364 PLN00020 ribulose bisphosphate 93.7 0.056 1.2E-06 56.2 3.5 69 81-174 149-222 (413)
365 PTZ00112 origin recognition co 93.7 0.28 6.1E-06 56.4 9.2 27 163-189 868-895 (1164)
366 COG3854 SpoIIIAA ncharacterize 93.7 0.27 5.9E-06 47.6 7.7 16 82-97 139-154 (308)
367 cd03214 ABC_Iron-Siderophores_ 93.7 0.26 5.6E-06 46.4 7.8 24 77-100 22-45 (180)
368 TIGR02928 orc1/cdc6 family rep 93.6 0.19 4.2E-06 52.9 7.7 24 427-450 326-349 (365)
369 COG1136 SalX ABC-type antimicr 93.6 0.036 7.8E-07 54.0 1.9 23 77-99 28-50 (226)
370 PTZ00454 26S protease regulato 93.6 0.075 1.6E-06 56.7 4.4 19 79-97 178-196 (398)
371 cd01129 PulE-GspE PulE/GspE Th 93.6 0.079 1.7E-06 53.3 4.3 34 66-99 64-99 (264)
372 PF00625 Guanylate_kin: Guanyl 93.6 0.21 4.6E-06 47.1 7.0 64 80-159 2-66 (183)
373 cd03281 ABC_MSH5_euk MutS5 hom 93.5 0.36 7.8E-06 46.9 8.7 20 80-99 29-48 (213)
374 PRK07399 DNA polymerase III su 93.5 0.67 1.4E-05 47.9 11.0 51 151-204 111-161 (314)
375 cd03223 ABCD_peroxisomal_ALDP 93.5 0.27 5.8E-06 45.7 7.4 24 77-100 24-47 (166)
376 TIGR03345 VI_ClpV1 type VI sec 93.4 0.34 7.3E-06 56.9 9.7 63 149-215 657-727 (852)
377 KOG0733 Nuclear AAA ATPase (VC 93.4 0.07 1.5E-06 58.2 3.6 28 81-124 224-251 (802)
378 CHL00195 ycf46 Ycf46; Provisio 93.4 0.19 4E-06 55.1 7.0 18 79-96 258-275 (489)
379 cd01131 PilT Pilus retraction 93.3 0.049 1.1E-06 52.3 2.3 17 82-98 3-19 (198)
380 KOG2228 Origin recognition com 93.3 1.1 2.3E-05 46.0 11.6 117 79-210 48-185 (408)
381 COG1474 CDC6 Cdc6-related prot 93.3 0.31 6.7E-06 51.4 8.3 17 81-97 43-59 (366)
382 PRK15483 type III restriction- 93.2 0.21 4.6E-06 58.3 7.5 121 318-459 501-638 (986)
383 COG3421 Uncharacterized protei 93.2 0.22 4.8E-06 54.2 7.1 77 138-214 78-175 (812)
384 TIGR01243 CDC48 AAA family ATP 93.2 0.11 2.4E-06 60.2 5.3 106 80-210 487-602 (733)
385 KOG0741 AAA+-type ATPase [Post 93.1 0.47 1E-05 51.2 9.2 57 156-213 590-656 (744)
386 COG1131 CcmA ABC-type multidru 93.1 0.1 2.3E-06 53.3 4.4 60 144-204 134-194 (293)
387 smart00072 GuKc Guanylate kina 93.0 0.81 1.8E-05 43.2 10.1 108 80-214 2-111 (184)
388 TIGR01241 FtsH_fam ATP-depende 93.0 0.092 2E-06 57.9 4.1 18 80-97 88-105 (495)
389 TIGR01242 26Sp45 26S proteasom 93.0 0.083 1.8E-06 55.8 3.6 18 80-97 156-173 (364)
390 KOG1132 Helicase of the DEAD s 93.0 0.16 3.6E-06 57.5 5.8 106 68-174 28-257 (945)
391 PRK11054 helD DNA helicase IV; 92.9 0.073 1.6E-06 60.8 3.2 105 56-173 187-301 (684)
392 PRK13531 regulatory ATPase Rav 92.9 0.25 5.5E-06 53.5 7.1 26 72-97 31-56 (498)
393 cd03227 ABC_Class2 ABC-type Cl 92.9 0.33 7.2E-06 44.9 7.1 20 80-99 21-40 (162)
394 KOG2004 Mitochondrial ATP-depe 92.9 0.41 8.9E-06 53.4 8.6 101 66-187 416-530 (906)
395 TIGR03522 GldA_ABC_ATP gliding 92.9 0.34 7.5E-06 49.7 7.8 68 144-214 131-198 (301)
396 TIGR00602 rad24 checkpoint pro 92.8 0.44 9.6E-06 53.7 9.2 21 79-99 109-129 (637)
397 TIGR02788 VirB11 P-type DNA tr 92.8 0.12 2.5E-06 53.4 4.2 26 75-100 139-164 (308)
398 PF13207 AAA_17: AAA domain; P 92.8 0.063 1.4E-06 46.7 2.0 16 82-97 1-16 (121)
399 KOG0733 Nuclear AAA ATPase (VC 92.8 0.16 3.5E-06 55.4 5.3 129 81-242 546-683 (802)
400 PF07724 AAA_2: AAA domain (Cd 92.8 0.099 2.1E-06 49.0 3.4 15 82-96 5-19 (171)
401 KOG1002 Nucleotide excision re 92.8 0.54 1.2E-05 50.0 8.9 145 64-215 183-363 (791)
402 KOG2340 Uncharacterized conser 92.7 1 2.2E-05 48.5 10.9 114 259-396 552-672 (698)
403 TIGR02868 CydC thiol reductant 92.7 0.29 6.2E-06 54.5 7.5 25 77-101 358-382 (529)
404 COG4555 NatA ABC-type Na+ tran 92.6 0.23 5.1E-06 47.1 5.5 55 153-213 145-201 (245)
405 PRK04841 transcriptional regul 92.6 0.3 6.5E-06 58.0 7.9 26 77-102 29-54 (903)
406 COG1110 Reverse gyrase [DNA re 92.6 0.33 7.1E-06 56.1 7.5 77 249-328 115-191 (1187)
407 COG1119 ModF ABC-type molybden 92.5 0.42 9.1E-06 46.8 7.3 27 77-103 54-80 (257)
408 PF13671 AAA_33: AAA domain; P 92.5 0.073 1.6E-06 47.7 2.0 16 82-97 1-16 (143)
409 PRK10733 hflB ATP-dependent me 92.5 0.15 3.2E-06 58.1 4.9 17 81-97 186-202 (644)
410 TIGR02525 plasmid_TraJ plasmid 92.4 0.097 2.1E-06 55.2 3.1 20 78-97 147-166 (372)
411 cd03263 ABC_subfamily_A The AB 92.4 0.58 1.2E-05 45.5 8.4 24 77-100 25-48 (220)
412 cd03289 ABCC_CFTR2 The CFTR su 92.4 0.34 7.4E-06 49.1 7.0 24 77-100 27-50 (275)
413 PRK13657 cyclic beta-1,2-gluca 92.4 0.43 9.3E-06 53.9 8.5 25 77-101 358-382 (588)
414 PRK06067 flagellar accessory p 92.3 0.2 4.4E-06 49.3 5.1 27 77-103 22-48 (234)
415 COG3839 MalK ABC-type sugar tr 92.3 0.07 1.5E-06 55.1 1.8 23 77-99 26-48 (338)
416 TIGR01420 pilT_fam pilus retra 92.3 0.095 2.1E-06 54.9 2.8 20 79-98 121-140 (343)
417 TIGR00382 clpX endopeptidase C 92.3 0.25 5.3E-06 52.8 5.9 17 81-97 117-133 (413)
418 KOG0740 AAA+-type ATPase [Post 92.2 0.26 5.6E-06 52.4 5.9 104 81-211 187-303 (428)
419 TIGR03345 VI_ClpV1 type VI sec 92.1 0.41 8.8E-06 56.2 8.1 34 64-97 187-225 (852)
420 TIGR02639 ClpA ATP-dependent C 92.1 0.58 1.3E-05 54.2 9.2 33 65-97 183-220 (731)
421 cd03300 ABC_PotA_N PotA is an 92.1 0.58 1.3E-05 46.0 8.0 24 77-100 23-46 (232)
422 COG1875 NYN ribonuclease and A 92.1 0.75 1.6E-05 47.6 8.7 40 58-97 221-262 (436)
423 COG0630 VirB11 Type IV secreto 92.1 0.12 2.7E-06 53.2 3.3 31 72-102 135-165 (312)
424 TIGR03263 guanyl_kin guanylate 92.0 0.1 2.2E-06 48.9 2.5 18 80-97 1-18 (180)
425 PRK14712 conjugal transfer nic 92.0 0.63 1.4E-05 57.4 9.6 53 259-311 1091-1145(1623)
426 CHL00095 clpC Clp protease ATP 92.0 0.54 1.2E-05 55.2 8.8 34 64-97 179-217 (821)
427 TIGR03375 type_I_sec_LssB type 92.0 0.33 7.1E-06 56.0 7.0 24 77-100 488-511 (694)
428 TIGR02857 CydD thiol reductant 92.0 0.38 8.2E-06 53.5 7.3 24 77-100 345-368 (529)
429 KOG1970 Checkpoint RAD17-RFC c 91.9 0.14 3E-06 55.3 3.6 19 79-97 109-127 (634)
430 PRK10865 protein disaggregatio 91.9 0.42 9.1E-06 56.3 7.9 34 64-97 178-216 (857)
431 COG0542 clpA ATP-binding subun 91.9 0.34 7.3E-06 55.3 6.7 73 81-174 522-603 (786)
432 COG1121 ZnuC ABC-type Mn/Zn tr 91.9 0.83 1.8E-05 45.3 8.7 75 144-225 137-214 (254)
433 PRK06871 DNA polymerase III su 91.8 0.86 1.9E-05 47.2 9.2 51 152-204 95-145 (325)
434 KOG0739 AAA+-type ATPase [Post 91.8 0.14 3E-06 51.2 3.2 97 82-206 168-277 (439)
435 PRK00300 gmk guanylate kinase; 91.7 0.12 2.6E-06 49.7 2.6 20 78-97 3-22 (205)
436 cd00820 PEPCK_HprK Phosphoenol 91.6 0.1 2.2E-06 44.7 1.7 23 77-99 12-34 (107)
437 PRK11160 cysteine/glutathione 91.6 0.46 9.9E-06 53.5 7.5 25 77-101 363-387 (574)
438 PRK05564 DNA polymerase III su 91.6 0.84 1.8E-05 47.1 8.9 22 156-177 85-106 (313)
439 PRK13709 conjugal transfer nic 91.6 0.75 1.6E-05 57.4 9.7 35 64-98 966-1002(1747)
440 COG0552 FtsY Signal recognitio 91.5 0.87 1.9E-05 46.7 8.6 119 81-216 140-281 (340)
441 COG1116 TauB ABC-type nitrate/ 91.5 0.1 2.2E-06 51.2 1.8 21 77-97 26-46 (248)
442 KOG0991 Replication factor C, 91.5 0.2 4.4E-06 48.5 3.8 18 81-98 49-66 (333)
443 PF13871 Helicase_C_4: Helicas 91.5 0.93 2E-05 45.7 8.7 62 311-382 54-115 (278)
444 TIGR02760 TraI_TIGR conjugativ 91.4 0.58 1.2E-05 59.7 8.8 35 63-97 1017-1053(1960)
445 cd03251 ABCC_MsbA MsbA is an e 91.4 0.92 2E-05 44.5 8.6 24 77-100 25-48 (234)
446 COG4962 CpaF Flp pilus assembl 91.4 0.21 4.5E-06 51.3 3.9 37 66-102 158-195 (355)
447 PRK14729 miaA tRNA delta(2)-is 91.3 0.18 3.8E-06 51.6 3.4 16 79-94 3-18 (300)
448 PRK05580 primosome assembly pr 91.3 0.37 8.1E-06 55.2 6.5 74 259-341 190-263 (679)
449 COG2812 DnaX DNA polymerase II 91.3 0.25 5.5E-06 53.9 4.8 54 152-209 107-160 (515)
450 TIGR00150 HI0065_YjeE ATPase, 91.3 0.2 4.3E-06 44.8 3.3 28 70-97 12-39 (133)
451 PTZ00293 thymidine kinase; Pro 91.3 0.6 1.3E-05 45.1 6.8 21 79-99 3-23 (211)
452 PRK08769 DNA polymerase III su 91.3 0.95 2.1E-05 46.8 8.8 52 152-205 101-152 (319)
453 COG0464 SpoVK ATPases of the A 91.2 0.36 7.8E-06 53.3 6.1 105 77-206 273-386 (494)
454 TIGR01192 chvA glucan exporter 91.2 0.53 1.1E-05 53.1 7.5 24 77-100 358-381 (585)
455 PF02367 UPF0079: Uncharacteri 91.2 0.19 4.2E-06 44.2 3.1 29 69-97 4-32 (123)
456 COG5008 PilU Tfp pilus assembl 91.1 0.14 3E-06 50.4 2.4 22 76-97 123-144 (375)
457 TIGR03346 chaperone_ClpB ATP-d 91.1 0.5 1.1E-05 55.7 7.3 133 54-203 163-309 (852)
458 PF13238 AAA_18: AAA domain; P 91.0 0.11 2.4E-06 45.3 1.5 15 83-97 1-15 (129)
459 COG1223 Predicted ATPase (AAA+ 91.0 0.27 5.8E-06 48.4 4.2 47 165-211 211-267 (368)
460 PRK10789 putative multidrug tr 91.0 0.49 1.1E-05 53.2 7.0 24 77-100 338-361 (569)
461 TIGR01842 type_I_sec_PrtD type 90.9 0.69 1.5E-05 51.7 8.0 24 77-100 341-364 (544)
462 KOG0744 AAA+-type ATPase [Post 90.9 0.19 4.1E-06 50.9 3.1 19 78-96 175-193 (423)
463 KOG0347 RNA helicase [RNA proc 90.9 0.46 9.9E-06 51.3 6.1 57 261-326 265-321 (731)
464 PRK10865 protein disaggregatio 90.9 0.66 1.4E-05 54.6 8.1 16 82-97 600-615 (857)
465 PRK11823 DNA repair protein Ra 90.9 0.18 4E-06 54.7 3.3 27 76-102 76-102 (446)
466 KOG2543 Origin recognition com 90.8 0.92 2E-05 47.2 8.0 42 62-103 6-53 (438)
467 PRK08699 DNA polymerase III su 90.8 1.1 2.4E-05 46.6 8.8 36 152-189 101-136 (325)
468 PF00005 ABC_tran: ABC transpo 90.8 0.12 2.5E-06 46.1 1.4 23 78-100 9-31 (137)
469 PRK11174 cysteine/glutathione 90.8 0.55 1.2E-05 53.0 7.2 24 77-100 373-396 (588)
470 PRK13695 putative NTPase; Prov 90.8 1.5 3.2E-05 41.0 9.0 18 83-100 3-20 (174)
471 PRK10078 ribose 1,5-bisphospho 90.7 0.15 3.3E-06 48.3 2.2 18 80-97 2-19 (186)
472 cd03280 ABC_MutS2 MutS2 homolo 90.7 0.46 1E-05 45.5 5.6 19 81-99 29-47 (200)
473 PHA03333 putative ATPase subun 90.7 4 8.7E-05 46.0 13.3 128 79-217 186-343 (752)
474 PRK10917 ATP-dependent DNA hel 90.7 0.8 1.7E-05 52.6 8.4 79 258-341 309-388 (681)
475 PRK06964 DNA polymerase III su 90.7 0.92 2E-05 47.4 8.1 52 151-204 119-170 (342)
476 PF12775 AAA_7: P-loop contain 90.7 0.26 5.7E-06 49.8 4.0 26 76-101 29-54 (272)
477 PRK11034 clpA ATP-dependent Cl 90.6 1.3 2.8E-05 51.2 10.0 18 80-97 207-224 (758)
478 cd03238 ABC_UvrA The excision 90.6 0.14 3.1E-06 48.1 1.9 22 77-98 18-39 (176)
479 KOG0726 26S proteasome regulat 90.5 0.14 3E-06 51.1 1.6 43 52-97 192-236 (440)
480 COG1435 Tdk Thymidine kinase [ 90.4 1 2.2E-05 42.6 7.3 82 80-177 4-95 (201)
481 KOG0058 Peptide exporter, ABC 90.4 0.78 1.7E-05 51.5 7.6 25 76-100 490-514 (716)
482 TIGR02204 MsbA_rel ABC transpo 90.4 0.7 1.5E-05 52.0 7.5 24 77-100 363-386 (576)
483 PRK11176 lipid transporter ATP 90.4 0.73 1.6E-05 51.9 7.7 24 77-100 366-389 (582)
484 TIGR02639 ClpA ATP-dependent C 90.3 1.1 2.3E-05 52.1 9.1 16 82-97 486-501 (731)
485 PRK08233 hypothetical protein; 90.3 0.18 3.9E-06 47.2 2.3 18 80-97 3-20 (182)
486 KOG1802 RNA helicase nonsense 90.3 0.37 8.1E-06 53.1 4.9 53 66-118 411-476 (935)
487 KOG0735 AAA+-type ATPase [Post 90.3 1.4 3E-05 49.4 9.2 21 77-97 428-448 (952)
488 TIGR02322 phosphon_PhnN phosph 90.3 0.19 4.1E-06 47.1 2.4 17 81-97 2-18 (179)
489 PLN02165 adenylate isopentenyl 90.2 0.17 3.8E-06 52.2 2.2 20 78-97 41-60 (334)
490 PRK08058 DNA polymerase III su 90.2 0.78 1.7E-05 47.8 7.1 47 153-201 99-145 (329)
491 COG1122 CbiO ABC-type cobalt t 90.2 0.15 3.3E-06 50.2 1.8 24 77-100 27-50 (235)
492 COG1132 MdlB ABC-type multidru 90.2 0.89 1.9E-05 51.1 8.1 24 77-100 352-375 (567)
493 TIGR03238 dnd_assoc_3 dnd syst 90.1 0.18 3.8E-06 54.4 2.2 22 77-98 29-50 (504)
494 PRK13764 ATPase; Provisional 90.1 0.22 4.9E-06 55.6 3.1 25 73-97 249-274 (602)
495 COG1373 Predicted ATPase (AAA+ 90.1 1.9 4.2E-05 46.1 10.1 30 68-97 24-54 (398)
496 COG1222 RPT1 ATP-dependent 26S 90.0 0.37 8E-06 49.6 4.3 117 63-206 168-300 (406)
497 COG1117 PstB ABC-type phosphat 90.0 0.18 3.8E-06 48.4 1.9 21 77-97 30-50 (253)
498 COG4525 TauB ABC-type taurine 90.0 0.2 4.3E-06 47.4 2.2 24 76-99 27-50 (259)
499 TIGR01188 drrA daunorubicin re 89.9 1.2 2.5E-05 45.8 8.1 24 77-100 16-39 (302)
500 PF12846 AAA_10: AAA-like doma 89.9 0.18 3.9E-06 51.2 2.0 19 80-98 1-19 (304)
No 1
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-147 Score=1143.93 Aligned_cols=572 Identities=67% Similarity=1.036 Sum_probs=545.0
Q ss_pred hHHHHHHHhhccccccc-------cccccccccc----------cCCCCCCccccccCCcccccchHHHHHHHhcCCCCh
Q 037717 5 DAWEKQQREKCTFEIED-------KIVDFFSESV----------FDGDNFDEFESELPNKSVVKSTLEMLQEERKTLPIY 67 (582)
Q Consensus 5 ~~w~~~~~~~~~~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~ 67 (582)
+.||++|+.++.++|++ +.|||+.++. ..|.+.+... .......+...+.+.|++||||
T Consensus 192 ~~WEd~ql~~a~~~~ga~~~~~~~~~ye~vfdd~~~idF~~e~~~~~~~e~~~~----~~~~~~~~~~~iee~RksLPVy 267 (902)
T KOG0923|consen 192 RAWEDHQLGNAMLKFGAKDAKEGSDGYEFVFDDQIVIDFIQESKLAGSNEEDAK----DAPTAYERRESIEEVRKSLPVY 267 (902)
T ss_pred HHHHHHHhhhhHhhcCCCcCcccccCceeeccchhhhhHHHhhhccccCccccc----hhhHHHHHHHHHHHHHhcCCch
Confidence 56999999999988866 4566666553 3443322111 1111113678899999999999
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEe
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR 133 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~ 133 (582)
.|+++++.++++|||+||+|+||||||||+||||++ |||++|+++|.|||+|||+.+|++|||++|
T Consensus 268 ~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIR 347 (902)
T KOG0923|consen 268 PYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIR 347 (902)
T ss_pred hhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEE
Confidence 999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHh
Q 037717 134 FEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSD 213 (582)
Q Consensus 134 ~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~ 213 (582)
|++|++++|.|.|||+|||+++++.+|.|.+||+|||||||||++++|+|++++|++.+.||++|++++|||+|+++|+.
T Consensus 348 FEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~ 427 (902)
T KOG0923|consen 348 FEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSA 427 (902)
T ss_pred eccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCe
Q 037717 214 YFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAEL 293 (582)
Q Consensus 214 ~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~ 293 (582)
||+++|||.+|||.|||+++|...|+.||+++++.++++||.+++.|+||||++|+++|+.+.+.|.++++.+|.+..++
T Consensus 428 fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~el 507 (902)
T KOG0923|consen 428 FFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIREL 507 (902)
T ss_pred hccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHH
Q 037717 294 IICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQR 373 (582)
Q Consensus 294 ~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR 373 (582)
.++|+|++||.+.|.+||++.|+|.||||+||||||||||||||.||||+|++|++.|||++||+++...||||+++.||
T Consensus 508 iv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QR 587 (902)
T KOG0923|consen 508 IVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQR 587 (902)
T ss_pred EEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCeEEEeeChhhhhhhhh--h-hhHhhhh--HHHHHHHHhcCCccccccCCCCchHHHHHHHHHHHHHcCCC
Q 037717 374 TGLSERTGPGKCFRLYTLHNYHRIWM--T-ILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEALLKAFELLYALGAL 448 (582)
Q Consensus 374 ~GRaGR~~~G~~~~L~~~~~~~~~~~--~-pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i~~al~~L~~lgal 448 (582)
+|||||+|||+||||||.+.|.+.++ + |||+|.| ++||.||+|||.|+.+|+|+|||+.+++..|+++|+.+|||
T Consensus 588 aGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGAL 667 (902)
T KOG0923|consen 588 AGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGAL 667 (902)
T ss_pred ccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999988 4 9999999 99999999999999999999999999999999999999999
Q ss_pred cCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHHHHHhhhccCCCCCcHHHH
Q 037717 449 NKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARMNFHLGDVGDRIAL 528 (582)
Q Consensus 449 ~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~~f~~~~~sD~~~~ 528 (582)
+..|+||.+|+.|++||+||+++|||+.+..+.|.+|+++|+||||++.++|++|+++...++++++.|..+ .|||+++
T Consensus 668 n~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~-~gDhi~~ 746 (902)
T KOG0923|consen 668 NHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEP-VGDHIVL 746 (902)
T ss_pred ccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCC-Ccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 5999999
Q ss_pred HHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 037717 529 LRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIYSN 581 (582)
Q Consensus 529 l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~ 581 (582)
|++|++|.+++++.+||.+||+++++|++|+++|+||..+|+++++...++.|
T Consensus 747 L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~ 799 (902)
T KOG0923|consen 747 LNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQN 799 (902)
T ss_pred hHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChH
Confidence 99999999999999999999999999999999999999999999999887753
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-133 Score=1050.22 Aligned_cols=528 Identities=55% Similarity=0.913 Sum_probs=511.9
Q ss_pred ccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHH
Q 037717 50 VKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARV 116 (582)
Q Consensus 50 ~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~v 116 (582)
.......+.++|..|||++++++|+.++++|+++||+|+||||||||+||||++ |||+||+++|+||
T Consensus 36 ~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RV 115 (674)
T KOG0922|consen 36 GKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRV 115 (674)
T ss_pred ccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHH
Confidence 336667788999999999999999999999999999999999999999999987 9999999999999
Q ss_pred HHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCC
Q 037717 117 SQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPD 196 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~ 196 (582)
|.|+++.+|+.|||++||+++++..|+|+|||+|+|||+++.+|.|++|++|||||||||++++|+|+++||++++.|++
T Consensus 116 AeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 116 AEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred HHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccCChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Q 037717 197 LKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAE 276 (582)
Q Consensus 197 ~kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 276 (582)
+|+|+||||+|+++|++||+++|++.++||.|||+++|.+.|..||+++++.++++||.++++|+||||++|++||+.++
T Consensus 196 LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 196 LKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred ceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCC
Q 037717 277 EILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTG 356 (582)
Q Consensus 277 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~ 356 (582)
+.|.+....++...+. .++|+||.||.++|.+||++.+.|.||||+||||||||||||+|.||||+|++|++.|||.+|
T Consensus 276 ~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9999998887777666 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccccCCCCchH
Q 037717 357 MESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLE 432 (582)
Q Consensus 357 ~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~ 432 (582)
++.|...|+|++++.||+|||||++||+|||||++++|+.+.+ .|||+|++ ..+|++|++|++|+..|+|+|||+.
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~ 434 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPP 434 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCCh
Confidence 9999999999999999999999999999999999999987777 49999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCccch-hchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHH-H
Q 037717 433 EALLKAFELLYALGALNKAGQLTR-VGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIY-A 510 (582)
Q Consensus 433 ~~i~~al~~L~~lgal~~~~~lT~-lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~-~ 510 (582)
+++..|++.|+.+||||++|.||. +|+.|+++|++|.++|+++.|..++|++|+++|+|||++ +++|++|.+++.+ +
T Consensus 435 ~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv-~~~f~~p~~~~~~~a 513 (674)
T KOG0922|consen 435 EALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSV-QSVFSRPKDKKAEDA 513 (674)
T ss_pred HHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeec-cceecCccchhhhhh
Confidence 999999999999999999999998 999999999999999999999999999999999999999 7899999988777 8
Q ss_pred HHHhhhccCCCCCcHHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 037717 511 DNARMNFHLGDVGDRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIYS 580 (582)
Q Consensus 511 ~~~~~~f~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~ 580 (582)
+..|.+|.... |||+|+|++|+.|.+++.+.+||.+||||+++|++|.++|+||..++++++++..++.
T Consensus 514 ~~~~~kf~~~e-GDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~ 582 (674)
T KOG0922|consen 514 DRKRAKFANPE-GDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCG 582 (674)
T ss_pred hHHHHhhcCcc-cCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 89999998865 8999999999999999999999999999999999999999999999999999986653
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-130 Score=1017.45 Aligned_cols=525 Identities=50% Similarity=0.880 Sum_probs=509.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhC
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~ 121 (582)
+.+.++|+.|||+..+++++..|.+|+++||+|+||||||||+||||++ |||+||+++|+||++||+
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 4488999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred CccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 122 VKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 122 ~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
..+|..|||.+||++++++.|.|.|||+|+||++.+.+..|..|++||+||||||++++|++++++|.++..|.++|+|+
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 037717 202 SSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQ 281 (582)
Q Consensus 202 ~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 281 (582)
+|||+|+++|++|||+||.|.||||.|||++.|...|..||+++++...++||...++|+||||.+|+++|+-.+..+.+
T Consensus 506 tSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~ 585 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKE 585 (1042)
T ss_pred eeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccCCC-CCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccc
Q 037717 282 RTRGLGTK-IAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESL 360 (582)
Q Consensus 282 ~~~~~~~~-~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l 360 (582)
.+..+... ...+.|+|+|+.||.+.|.+||+..+.|.|||||||||||+|+|||+|.||||||++|.+.||++.|++.|
T Consensus 586 ~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L 665 (1042)
T KOG0924|consen 586 KLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDAL 665 (1042)
T ss_pred HHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccccccee
Confidence 77665533 24799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh--h-hhHhhhh--HHHHHHHHhcCCccccccCCCCchHHHH
Q 037717 361 LVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM--T-ILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEAL 435 (582)
Q Consensus 361 ~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~-pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i 435 (582)
...|||++++.||+|||||+|||.||||||+..|.+.+. + |||+|+| ++||.+|++|++++..|+|+|||+.+.+
T Consensus 666 ~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~ 745 (1042)
T KOG0924|consen 666 QIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNL 745 (1042)
T ss_pred EEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHH
Confidence 999999999999999999999999999999999987766 4 9999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHHHHHhh
Q 037717 436 LKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARM 515 (582)
Q Consensus 436 ~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~ 515 (582)
..++..|..+|||+..|.||++|+.|++||+||.++|||+.|+.+||.+|+|+|++|||+ +.+|++|+++.++++.+|.
T Consensus 746 ~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSv-p~VF~rpker~eead~ar~ 824 (1042)
T KOG0924|consen 746 LNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSV-PAVFYRPKEREEEADAARE 824 (1042)
T ss_pred HHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcc-cceeeccccchhhhhhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred hccCCCCCcHHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 037717 516 NFHLGDVGDRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIYSN 581 (582)
Q Consensus 516 ~f~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~ 581 (582)
+|.... |||||+||+|++|++.+++..||.+|||+.++|++|+++|+||.++|+.+.+++.|++.
T Consensus 825 Kf~~~~-sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~d 889 (1042)
T KOG0924|consen 825 KFQVPE-SDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDD 889 (1042)
T ss_pred hhcCCC-CchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCch
Confidence 999865 99999999999999999999999999999999999999999999999999999988753
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-124 Score=942.55 Aligned_cols=525 Identities=50% Similarity=0.826 Sum_probs=508.4
Q ss_pred ccccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHH
Q 037717 48 SVVKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAA 114 (582)
Q Consensus 48 ~~~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~ 114 (582)
.+..+++..+.+.|..||||.+++++++.+.+||.++++|+||||||||+||++++ |||++|+++|+
T Consensus 30 ~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~ 109 (699)
T KOG0925|consen 30 KPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQ 109 (699)
T ss_pred CcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC
Q 037717 115 RVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR 194 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~ 194 (582)
|||+||+..+|++|||++||++|++++|-+.|||+|||+|+..+++.|..|++||+||||||++.+|+|++++|++...+
T Consensus 110 RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r 189 (699)
T KOG0925|consen 110 RVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR 189 (699)
T ss_pred HHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecccCChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 037717 195 PDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIER 274 (582)
Q Consensus 195 ~~~kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 274 (582)
|++|+|+||||+++++|..||+++|++.+|| .+||+++|++.++.||+++++.++++||..+.+|+||||++|.++|+.
T Consensus 190 pdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~ 268 (699)
T KOG0925|consen 190 PDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIED 268 (699)
T ss_pred CCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC-----CcEEEEeCCCCccccccCCeeEEEeCCcccce
Q 037717 275 AEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-----ARKVVLATNIAETSLTIDGIKYVIHPGFAKVK 349 (582)
Q Consensus 275 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-----~~kVivaT~iae~gidIp~v~~VID~g~~k~~ 349 (582)
+++.+......++.....+.++|+| +.+|++||++.+.. .|||||+||+||++++|++|.||||+|+.|++
T Consensus 269 aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqk 344 (699)
T KOG0925|consen 269 ACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQK 344 (699)
T ss_pred HHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhc
Confidence 9999998888899888999999999 77888999988643 48999999999999999999999999999999
Q ss_pred eecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh--h-hhHhhhh--HHHHHHHHhcCCccccc
Q 037717 350 SYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM--T-ILCQKYN--ELIWKMLSLFSNVLVNF 424 (582)
Q Consensus 350 ~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~-pei~r~~--~~~L~l~~l~~~~~~~f 424 (582)
.|||+.+.+++...||||+++.||+|||||+.||+||||||++.|+..+. + |||+|+| ++||++|.+|++++.+|
T Consensus 345 VYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf 424 (699)
T KOG0925|consen 345 VYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF 424 (699)
T ss_pred ccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC
Confidence 99999999999999999999999999999999999999999999998877 4 9999999 99999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccCh
Q 037717 425 DFIDPPLEEALLKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPK 504 (582)
Q Consensus 425 ~~~~~p~~~~i~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~ 504 (582)
+|+|||.++++.+|++.|..++|+|+||+||++|..|++||+||.+||||+.|+.|.|.+|+|+|+|||++ +..|++|.
T Consensus 425 dfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsv-PncFvRp~ 503 (699)
T KOG0925|consen 425 DFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSV-PNCFVRPT 503 (699)
T ss_pred cCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccC-CccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 77999998
Q ss_pred -hhHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 037717 505 -DKQIYADNARMNFHLGDVGDRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIY 579 (582)
Q Consensus 505 -~~~~~~~~~~~~f~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~ 579 (582)
+.++.|+.++..|++.+ |||+|++|+|.+|++++...+||++||||+++|+.|.++|.||.++|+|+++++++.
T Consensus 504 ~~a~kaAdeak~~faH~d-GDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st 578 (699)
T KOG0925|consen 504 SSASKAADEAKETFAHID-GDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCST 578 (699)
T ss_pred hhHHHHHHHHHHHhccCC-cchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCC
Confidence 77888999999999976 999999999999999999999999999999999999999999999999999998763
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-109 Score=919.64 Aligned_cols=518 Identities=46% Similarity=0.698 Sum_probs=482.8
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~ 118 (582)
.....+...+..|||+..+.+|++++.+|+++||+||||||||||+|+++++ |||++|.++|+|+|+
T Consensus 37 ~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAe 116 (845)
T COG1643 37 ANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAE 116 (845)
T ss_pred cccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHH
Confidence 4456678889999999999999999999999999999999999999999998 999999999999999
Q ss_pred HhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCC-Cc
Q 037717 119 EMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP-DL 197 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~-~~ 197 (582)
++++.+|+.|||.+||+++++++|+|.|||+|+|+++++.++.|+.|++|||||+|||++++|++|+++|+++..++ ++
T Consensus 117 el~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 117 ELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred HhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666 79
Q ss_pred eEEEecccCChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhH-HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Q 037717 198 KLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDY-IEAAIVTALQIHVNEPTGDILVFLTGQDEIERAE 276 (582)
Q Consensus 198 kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 276 (582)
|+|+||||+|.++|++||+++|++.++||.|||+++|.+.+..++ +++++..+++++..++.|+||||+||.+||+.++
T Consensus 197 KiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 197 KLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred eEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 999999999999999999999999999999999999999988888 9999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCC
Q 037717 277 EILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTG 356 (582)
Q Consensus 277 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~ 356 (582)
+.|.+ ..++ +.+.++|+||.|+.++|.+||++.+.|+||||+||||||||||||+|+||||+|+.|.+.||+.+|
T Consensus 277 ~~L~~--~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 277 EWLEK--AELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHh--cccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 99987 2222 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCC-ccccccCCCCch
Q 037717 357 MESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSN-VLVNFDFIDPPL 431 (582)
Q Consensus 357 ~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~-~~~~f~~~~~p~ 431 (582)
++.+.+.||||+++.||+|||||++||+|||||++++|..+.. .|||+|++ +++|+++++|++ ++..|+|+|||+
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~ 431 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPP 431 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCC
Confidence 9999999999999999999999999999999999999997666 49999999 999999999995 999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCC--CccccChhhHH-
Q 037717 432 EEALLKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGN--SIFYRPKDKQI- 508 (582)
Q Consensus 432 ~~~i~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~--~~f~~~~~~~~- 508 (582)
..++..|++.|+.+||||.+|.||++|+.|+.||+||++|+|++.|..++|++++++|+|||++.+ +.|..+.+.+.
T Consensus 432 ~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~ 511 (845)
T COG1643 432 EAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQ 511 (845)
T ss_pred hHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999954 15777765554
Q ss_pred --HHHHHh-hhccC--CCCCcHHHHHHHHHHHHHcC------CcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-cCC
Q 037717 509 --YADNAR-MNFHL--GDVGDRIALLRVYNCWRECN------YSTEWCRENYIQVSSMKRARDIRDQLEGLFAR-VEI 574 (582)
Q Consensus 509 --~~~~~~-~~f~~--~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~-~~~ 574 (582)
..+.++ .++.. ...+||++++++|..|.... ...+||..++++.+.|.++..++.++...+.+ .+.
T Consensus 512 ~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~ 589 (845)
T COG1643 512 RTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGR 589 (845)
T ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccc
Confidence 344333 22322 23599999999999998876 56789999999999999999999999998887 443
No 6
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.5e-106 Score=892.12 Aligned_cols=525 Identities=37% Similarity=0.613 Sum_probs=486.1
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHH
Q 037717 51 KSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAAR 115 (582)
Q Consensus 51 ~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~ 115 (582)
...+++++..|.+||++.++++|++++.+++|++|+|+||||||||+||++++ |||++|+++|+|
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCC
Q 037717 116 VSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP 195 (582)
Q Consensus 116 va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~ 195 (582)
||+|++...|..|||++|.++..+..|++.|||+|+||+.+..++.+.+++|||+||+|||++++|++|.++|.++..+|
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecccCChHHHHhhhCCCCEEeeCCceeceeEEEecC-----------------Cchh--------------HHH
Q 037717 196 DLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKA-----------------PEVD--------------YIE 244 (582)
Q Consensus 196 ~~kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~-----------------~~~~--------------~~~ 244 (582)
++|+|+||||+|++.|++||+++|++.++|+.|||..+|+.. ++.. ..+
T Consensus 319 ~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 319 DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999999999999999999999999999999999988541 1111 011
Q ss_pred HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEe
Q 037717 245 AAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLA 324 (582)
Q Consensus 245 ~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViva 324 (582)
.....+..++.....|.||||+||..+|..+.+.|......... ..+.+.|+||.|+.++|+.||+..+.|.||||+|
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~--~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIla 476 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS--LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILA 476 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc--cceEEEeccccCChHHHHHhcCCCCCCcchhhhh
Confidence 12233444555555799999999999999999999764332221 4589999999999999999999999999999999
Q ss_pred CCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh---hh
Q 037717 325 TNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM---TI 401 (582)
Q Consensus 325 T~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~---~p 401 (582)
|||||+|||||||.||||+|+.|++.||+..+++.+...|+|++++.||+|||||..+|.||+||++..|+.++. .|
T Consensus 477 TNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~P 556 (924)
T KOG0920|consen 477 TNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLP 556 (924)
T ss_pred hhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888 49
Q ss_pred hHhhhh--HHHHHHHHhcCCccccc--cCCCCchHHHHHHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhc
Q 037717 402 LCQKYN--ELIWKMLSLFSNVLVNF--DFIDPPLEEALLKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSL 477 (582)
Q Consensus 402 ei~r~~--~~~L~l~~l~~~~~~~f--~~~~~p~~~~i~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~ 477 (582)
||+|.+ +++|++|.++...+..| ..++||+.+++..|+..|..+||++.+.+||+||+.++.||+||.+|||++.|
T Consensus 557 EilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g 636 (924)
T KOG0920|consen 557 EILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFG 636 (924)
T ss_pred HHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheeh
Confidence 999999 99999999998887766 78999999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhhccCCCccccChhhHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHcCC-----cHHHHHHcCCCH
Q 037717 478 DKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARMNFHLGDVGDRIALLRVYNCWRECNY-----STEWCRENYIQV 552 (582)
Q Consensus 478 ~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~~f~~~~~sD~~~~l~~~~~~~~~~~-----~~~~c~~~~l~~ 552 (582)
+.|+|++++++|||+|+. .+||+.|.+++..++..++.|..+..|||++++++|+.|.+... ..+||++|||+.
T Consensus 637 ~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~ 715 (924)
T KOG0920|consen 637 AIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSS 715 (924)
T ss_pred hhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccH
Confidence 999999999999999997 89999999999999999999988778999999999999988543 367999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccc
Q 037717 553 SSMKRARDIRDQLEGLFARVEIDTSI 578 (582)
Q Consensus 553 ~~l~~~~~~~~ql~~~l~~~~~~~~~ 578 (582)
.+|+++.++|.|+.+.|.++++...+
T Consensus 716 ~~l~~i~~l~~q~~~~l~~~g~~~~~ 741 (924)
T KOG0920|consen 716 NTLQEISSLRVQFLELLSDIGLIPIS 741 (924)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCC
Confidence 99999999999999999999977643
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.5e-104 Score=909.14 Aligned_cols=510 Identities=37% Similarity=0.604 Sum_probs=471.7
Q ss_pred HHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccC
Q 037717 59 EERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLG 125 (582)
Q Consensus 59 ~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g 125 (582)
..+..|||+.++++|++++.+|+++||+|+||||||||+|+++++ |||++|.++|.||+++++..+|
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 446789999999999999999999999999999999999999875 9999999999999999999999
Q ss_pred cEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 126 HEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 126 ~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
..|||+++++++.+.+|+|+|||||+|++++..++.|++|++|||||||||++++|+++++++.++..+|++|+|+||||
T Consensus 148 ~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred ceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CChHHHHhhhCCCCEEeeCCceeceeEEEecCCc------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHH
Q 037717 206 LDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPE------VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEIL 279 (582)
Q Consensus 206 ~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L 279 (582)
++.+.|++||+++|++.++|+.|||+++|.+... .+++...+..+..++ ..+.|+|||||||+++|+.+++.|
T Consensus 228 id~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L 306 (1294)
T PRK11131 228 IDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADAL 306 (1294)
T ss_pred CCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999987543 334444444444443 355799999999999999999999
Q ss_pred HHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCccc
Q 037717 280 KQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMES 359 (582)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~ 359 (582)
.+. ..+.+.+.++||+|++++|.++|+. .|.++||||||+||+|||||+|+||||+|+.|.+.||+.++++.
T Consensus 307 ~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~ 378 (1294)
T PRK11131 307 NKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQR 378 (1294)
T ss_pred Hhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCccc
Confidence 863 1245678999999999999999986 57899999999999999999999999999999999999999999
Q ss_pred ccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccccCCCCchHHHH
Q 037717 360 LLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEAL 435 (582)
Q Consensus 360 l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i 435 (582)
+...|+|+++|.||+|||||.++|+||+||++++|..+.+ .|||+|++ +++|+++++|++++..|+|++||+.+++
T Consensus 379 Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i 458 (1294)
T PRK11131 379 LPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNI 458 (1294)
T ss_pred CCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHH
Confidence 9999999999999999999999999999999999988766 59999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCC-----CccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHH
Q 037717 436 LKAFELLYALGALNKA-----GQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYA 510 (582)
Q Consensus 436 ~~al~~L~~lgal~~~-----~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~ 510 (582)
.+|++.|+.+|||+.+ ++||++|+.|++||+||++||||+.|..++|++|+++|+|+|++ .++|.+|.+++..+
T Consensus 459 ~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv-~dpf~~p~~~~~~a 537 (1294)
T PRK11131 459 QDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSI-QDPRERPMDKQQAS 537 (1294)
T ss_pred HHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcccCCchhHHHH
Confidence 9999999999999864 57999999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHhhhccCCCCCcHHHHHHHHHHHHHcC------CcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 037717 511 DNARMNFHLGDVGDRIALLRVYNCWRECN------YSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIY 579 (582)
Q Consensus 511 ~~~~~~f~~~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~ 579 (582)
+.++.+|... .|||++++|+|+.|.+.. ...+||++||||+.+|+++.+++.||.++++++|++.+++
T Consensus 538 ~~~~~~f~~~-~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~ 611 (1294)
T PRK11131 538 DEKHRRFADK-ESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSE 611 (1294)
T ss_pred HHHHHhhCCC-CCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999875 499999999999997632 1357999999999999999999999999999999987654
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-102 Score=896.11 Aligned_cols=511 Identities=39% Similarity=0.635 Sum_probs=472.0
Q ss_pred HHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCcc
Q 037717 58 QEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 58 ~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~ 124 (582)
...+..|||+.++++|++++.+|+++||+|+||||||||+|+++++ |||++|.++|.||+++++..+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 4456789999999999999999999999999999999999999876 999999999999999999999
Q ss_pred CcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 125 GHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 125 g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
|..|||++|++++.+.+|+|+|||+|+|++++..++.|.+|++|||||||||++++|++++++++++..++++|+|+|||
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSA 219 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSA 219 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHhhhCCCCEEeeCCceeceeEEEecCCc------hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHH
Q 037717 205 TLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPE------VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEI 278 (582)
Q Consensus 205 T~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 278 (582)
|+|.+.|++||+++|++.++|+.|||+++|.+... .++....+..+..++. ...|+||||+||+++|+.+++.
T Consensus 220 Tld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 220 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred CcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999986532 2344444444444433 3569999999999999999999
Q ss_pred HHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcc
Q 037717 279 LKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGME 358 (582)
Q Consensus 279 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~ 358 (582)
|.+.. .+.+.+.++||+|++++|+++|+++ +.+||||||||||+|||||+|+||||+|++|.+.||+.++++
T Consensus 299 L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 299 LRKRN------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 98632 2357899999999999999999875 358999999999999999999999999999999999999999
Q ss_pred cccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccccCCCCchHHH
Q 037717 359 SLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEA 434 (582)
Q Consensus 359 ~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~ 434 (582)
.+...|+|+++|.||+|||||.++|+||+||++++|+.+.+ .|||+|++ +++|+++++|+.++..|+|++||+.++
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~ 450 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRA 450 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHH
Confidence 99999999999999999999999999999999999988766 59999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCC---ccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHHH
Q 037717 435 LLKAFELLYALGALNKAG---QLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYAD 511 (582)
Q Consensus 435 i~~al~~L~~lgal~~~~---~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~ 511 (582)
+..|++.|+.+||||++| +||++|+.|++||++|++||||+.|..++|++++++|+|+|++ .++|.+|.+++..++
T Consensus 451 i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p~~~~~~a~ 529 (1283)
T TIGR01967 451 IRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEKQQAAD 529 (1283)
T ss_pred HHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCcchhHHHHH
Confidence 999999999999999988 7999999999999999999999999999999999999999999 678999999999999
Q ss_pred HHhhhccCCCCCcHHHHHHHHHHHHHcC------CcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 037717 512 NARMNFHLGDVGDRIALLRVYNCWRECN------YSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIY 579 (582)
Q Consensus 512 ~~~~~f~~~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~ 579 (582)
.++.+|... .|||++++|+|+.|.+.. ...+||++||||+.+|+++.++++||.+++++++++..++
T Consensus 530 ~~~~~f~~~-~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~ 602 (1283)
T TIGR01967 530 QAHARFKDP-RSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEE 602 (1283)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 999999875 599999999999997642 2368999999999999999999999999999998876553
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-101 Score=811.18 Aligned_cols=519 Identities=40% Similarity=0.622 Sum_probs=474.7
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------------chHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------------PRWVAAMSVA 113 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------------P~r~~a~~~a 113 (582)
.+-.++++.|..|||....++|+++|..|.++||||+||||||||+||||++ |||+||++.|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 114 ARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 114 ~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
+||+.|++. +|.+|||++||+...++.|.|.|||+|+|++++.++..|..|++|||||||||++++|+|+++|.++.+.
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C----------CCceEEEecccCChHHHHh---hhC-CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCC
Q 037717 194 R----------PDLKLLISSATLDAEKFSD---YFG-SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPT 259 (582)
Q Consensus 194 ~----------~~~kii~~SAT~~~~~~~~---~f~-~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 259 (582)
| ..+|+|+||||+-+.+|.+ .|. ..|++.++.|.|||.+||......||+..+....+.||..-|.
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 4 2689999999998888874 454 4689999999999999999998899999999999999999999
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhc------------------------------------------------------
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRG------------------------------------------------------ 285 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~------------------------------------------------------ 285 (582)
|.||||++|+.+++.+++.|+++..-
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999876220
Q ss_pred -------------------cC-----------------CCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCc
Q 037717 286 -------------------LG-----------------TKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAE 329 (582)
Q Consensus 286 -------------------~~-----------------~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae 329 (582)
.+ .....+.++|+|+=|+.+.|.+||+..+.|.|-||||||+||
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 00 011257899999999999999999999999999999999999
Q ss_pred cccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhh---hhhHhhh
Q 037717 330 TSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWM---TILCQKY 406 (582)
Q Consensus 330 ~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~---~pei~r~ 406 (582)
||+|||+|+||||||..|...||..+|++++...|+|++++.||+|||||+|||+|||||+...|++.++ .|||++.
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~ 721 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKK 721 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997766 4999999
Q ss_pred h--HHHHHHHHhcCCccccccCCCCchHHHHHHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChH
Q 037717 407 N--ELIWKMLSLFSNVLVNFDFIDPPLEEALLKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSD 484 (582)
Q Consensus 407 ~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~ 484 (582)
+ +++|++|+++|+++.+|+|..||...++..|...|..+||||.+|.||+||+.||.||+.|+++|||+.+...+|+.
T Consensus 722 Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lp 801 (1172)
T KOG0926|consen 722 PVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLP 801 (1172)
T ss_pred cHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchh
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcccc--------------Chhh------------------HHHHHHHhhhccCCCCCcHHHHHHHH
Q 037717 485 EIITIAAMLFVGNSIFYR--------------PKDK------------------QIYADNARMNFHLGDVGDRIALLRVY 532 (582)
Q Consensus 485 ~~l~i~a~l~~~~~~f~~--------------~~~~------------------~~~~~~~~~~f~~~~~sD~~~~l~~~ 532 (582)
-++.+++.|++ ..+|+. |.++ +.....++.+|.... ||-++++.+.
T Consensus 802 y~i~lvsaLsv-~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~-sd~l~Ll~Av 879 (1172)
T KOG0926|consen 802 YNIALVSALSV-YEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLD-SDALVLLSAV 879 (1172)
T ss_pred HHHHHHHHHhc-cchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCC-ccHHHHHHHH
Confidence 99999999998 445531 1110 001112445566544 8999999999
Q ss_pred HHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcC
Q 037717 533 NCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVE 573 (582)
Q Consensus 533 ~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~ 573 (582)
..+....+...||.+|||..++|..++++|+||..++.+.+
T Consensus 880 ~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~ 920 (1172)
T KOG0926|consen 880 SAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGN 920 (1172)
T ss_pred HHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888777778999999999999999999999999998554
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-87 Score=757.37 Aligned_cols=427 Identities=37% Similarity=0.563 Sum_probs=399.4
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEEeEE
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEVGYS 131 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~vgy~ 131 (582)
|||+.+..+|++++.+|+++|++|+|||||||++|+++++ |||++|.+++.+++++++..+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 7999999999999999999999999999999999999875 9999999999999999999999999999
Q ss_pred EeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChHH
Q 037717 132 IRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAEK 210 (582)
Q Consensus 132 v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~~ 210 (582)
+++++..+.+++|+|+|+|+|++++..++.|++|++|||||+|||++++|+++++++.+.. .++++|+|+||||++.+.
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~ 160 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER 160 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH
Confidence 9999999999999999999999999998899999999999999999999999999888765 578999999999999999
Q ss_pred HHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCC
Q 037717 211 FSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKI 290 (582)
Q Consensus 211 ~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~ 290 (582)
+++||++++++.++|+.|||+++|.+.+..+++...+...+........|+|||||||+++|+.+++.|.+...
T Consensus 161 l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------ 234 (819)
T TIGR01970 161 LSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD------ 234 (819)
T ss_pred HHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC------
Confidence 99999999999999999999999988766666554443333333334468999999999999999999986432
Q ss_pred CCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhH
Q 037717 291 AELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASA 370 (582)
Q Consensus 291 ~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~ 370 (582)
.++.++++||+|++++|.++++.|++|.+||||||||||+|||||+|+||||+|++|...||+.+|++.+.+.|+|+++|
T Consensus 235 ~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 314 (819)
T TIGR01970 235 SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASA 314 (819)
T ss_pred CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccccCCCCchHHHHHHHHHHHHHcC
Q 037717 371 NQRTGLSERTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEALLKAFELLYALG 446 (582)
Q Consensus 371 ~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i~~al~~L~~lg 446 (582)
.||+|||||.++|.||+||++++|..+.+ .|||++++ +++|+++++|+.++..|+|+|||+.+++..|++.|..+|
T Consensus 315 ~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lg 394 (819)
T TIGR01970 315 TQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLG 394 (819)
T ss_pred HhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999987766 59999999 999999999999999999999999999999999999999
Q ss_pred CCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccC
Q 037717 447 ALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVG 496 (582)
Q Consensus 447 al~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~ 496 (582)
|||++|+||++|+.|++||++|++||||+.|..++|.+++++|+|+|+..
T Consensus 395 ald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~ 444 (819)
T TIGR01970 395 ALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEER 444 (819)
T ss_pred CCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999993
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.2e-85 Score=736.82 Aligned_cols=427 Identities=37% Similarity=0.573 Sum_probs=395.8
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
.|||+.+..+|++++.++++++++|+|||||||++|+++++ |||++|.+++++++++++..+|..|||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 59999999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred EEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChH
Q 037717 131 SIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAE 209 (582)
Q Consensus 131 ~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~ 209 (582)
.+++++..+.+++|+|+|+|+|++++..++.|+++++|||||+|||++++|+++++++.+.+ .++++|+|+||||++.+
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~ 162 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND 162 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH
Confidence 99999999999999999999999999999899999999999999999999999999888765 47899999999999999
Q ss_pred HHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCC
Q 037717 210 KFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTK 289 (582)
Q Consensus 210 ~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~ 289 (582)
.+++||++++++.++|+.|||+.+|.+.+..+++...+...+........|++||||||+++|+.+++.|.+...
T Consensus 163 ~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~----- 237 (812)
T PRK11664 163 RLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA----- 237 (812)
T ss_pred HHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc-----
Confidence 999999999999999999999999998777777665554444444444579999999999999999999986321
Q ss_pred CCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHh
Q 037717 290 IAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKAS 369 (582)
Q Consensus 290 ~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~ 369 (582)
.++.+.++||+|++++|+++++.|++|++||||||||||+|||||+|++|||+|++|...||+.+|++.+.+.|+|+++
T Consensus 238 -~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 316 (812)
T PRK11664 238 -SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQAS 316 (812)
T ss_pred -CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhh
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccccCCCCchHHHHHHHHHHHHHc
Q 037717 370 ANQRTGLSERTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEALLKAFELLYAL 445 (582)
Q Consensus 370 ~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i~~al~~L~~l 445 (582)
|.||+|||||.++|+||+||++++|..+.+ .|||++++ +++|.++++|+.++..|+|+|||+..++.+|++.|..+
T Consensus 317 a~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~l 396 (812)
T PRK11664 317 MTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQL 396 (812)
T ss_pred hhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999988766 59999999 99999999999999999999999999999999999999
Q ss_pred CCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChH--HHHHHHHhhcc
Q 037717 446 GALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSD--EIITIAAMLFV 495 (582)
Q Consensus 446 gal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~--~~l~i~a~l~~ 495 (582)
||||++|+||++|+.|++||++|++|+||+.|..++|.. .+..++|+|+.
T Consensus 397 gald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e 448 (812)
T PRK11664 397 GALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEE 448 (812)
T ss_pred CCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998643 55666666655
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=3.5e-62 Score=520.24 Aligned_cols=519 Identities=30% Similarity=0.481 Sum_probs=441.0
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-----------------chHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-----------------PRWVAAMSVAA 114 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-----------------P~r~~a~~~a~ 114 (582)
..+..+.++|..||+..++.+|++++.+|++++|-++||||||||+.|+|++ |||+.|++++.
T Consensus 365 ~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiae 444 (1282)
T KOG0921|consen 365 EALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAE 444 (1282)
T ss_pred cchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHH
Confidence 5567788999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHhCCccCcEEeEEEeecccCCC-CccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 115 RVSQEMGVKLGHEVGYSIRFEDCTSD-KTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~~~~~-~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
||+++.++.+|..|||++|+++.++. -..|.+||.|.+++++. ..+..++|+|+||.|||++++|+++.+++.+...
T Consensus 445 rva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e--~glrg~sh~i~deiherdv~~dfll~~lr~m~~t 522 (1282)
T KOG0921|consen 445 RVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMME--NGLRGISHVIIDEIHERDVDTDFVLIVLREMIST 522 (1282)
T ss_pred HHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhh--hcccccccccchhhhhhccchHHHHHHHHhhhcc
Confidence 99999999999999999999998874 56899999999999985 3488999999999999999999999999999999
Q ss_pred CCCceEEEecccCChHHHHhhhCCCCEEeeCCceeceeEEEecC-------------------------Cchh-------
Q 037717 194 RPDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKA-------------------------PEVD------- 241 (582)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~-------------------------~~~~------- 241 (582)
.+++++++||||+|.+.|..||+++|...+.|+.+|+..+|+.. +..+
T Consensus 523 y~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n 602 (1282)
T KOG0921|consen 523 YRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMN 602 (1282)
T ss_pred chhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccc
Confidence 99999999999999999999999999999999999987665320 0000
Q ss_pred ------HHH----------------HHHHHHHH-HHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEe
Q 037717 242 ------YIE----------------AAIVTALQ-IHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPI 298 (582)
Q Consensus 242 ------~~~----------------~~~~~~~~-i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 298 (582)
|.+ ..+..++. +....-.|.||||+|++.++-.+...+...... .+.....++|+
T Consensus 603 ~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f--g~~~~y~ilp~ 680 (1282)
T KOG0921|consen 603 ILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF--GQANKYEILPL 680 (1282)
T ss_pred cccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh--ccchhcccccc
Confidence 000 00111111 122223589999999999999999988764321 23356789999
Q ss_pred cCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCC
Q 037717 299 YANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSE 378 (582)
Q Consensus 299 h~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaG 378 (582)
|+.++..+|.+||+..+.|..|+|++||++++++||.++++|||.+..+.+.|-....+....+.|.|+.+..||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeChhhhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccc--cCCCCchHHHHHHHHHHHHHcCCCcCCC
Q 037717 379 RTGPGKCFRLYTLHNYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNF--DFIDPPLEEALLKAFELLYALGALNKAG 452 (582)
Q Consensus 379 R~~~G~~~~L~~~~~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f--~~~~~p~~~~i~~al~~L~~lgal~~~~ 452 (582)
|..+|.||++.++..|+.+.. +||+.+.+ .+.|.+|.+....+..| ..+.||+.+++..+-..|..++++|.++
T Consensus 761 rvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~ 840 (1282)
T KOG0921|consen 761 RVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDAND 840 (1282)
T ss_pred eecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccC
Confidence 999999999999999987766 79999998 77777777665555554 6789999999999999999999999999
Q ss_pred ccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHHHHHhhhccCCCCCcHHHHHH--
Q 037717 453 QLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARMNFHLGDVGDRIALLR-- 530 (582)
Q Consensus 453 ~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~~f~~~~~sD~~~~l~-- 530 (582)
.+|++|+.++++|+.|.++|+++.+..++|.+-|+.+|+.++. ..+|+.-..........+++|++...|||.+...
T Consensus 841 elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~-~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~ 919 (1282)
T KOG0921|consen 841 ELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSF-PTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVI 919 (1282)
T ss_pred cccchhhhhhhccCcccccceeeechhhccchhhhhhhccccc-ccccccccccccccccchhhccccccccchhhhhhh
Confidence 9999999999999999999999999999999999999998888 4444432111122223345565555555555555
Q ss_pred ---HHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 037717 531 ---VYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEID 575 (582)
Q Consensus 531 ---~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~ 575 (582)
.|+.|..+....+||..+.++...|....+.+.||.++|+.+..+
T Consensus 920 q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fp 967 (1282)
T KOG0921|consen 920 QGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFP 967 (1282)
T ss_pred hhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCc
Confidence 455555555567899999999999999999999999999966543
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3e-59 Score=516.20 Aligned_cols=377 Identities=20% Similarity=0.270 Sum_probs=301.9
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----------------c----------chHHHHHHHHHHHHHHh
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----------------E----------PRWVAAMSVAARVSQEM 120 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----------------~----------P~r~~a~~~a~~va~~~ 120 (582)
..|+++++.+.+++++|++|+||||||+|+||+++ + |||++|.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999998763 1 99999999999888776
Q ss_pred CCccCcEEeEEEeecccCC-------CCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 121 GVKLGHEVGYSIRFEDCTS-------DKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 121 ~~~~g~~vgy~v~~~~~~~-------~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
+......+.+.+++++... ...+|+++|++. ..+.|+++++|||||||||...+|+++++++.....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 6432112333455554432 245799999763 234689999999999999999999999999876543
Q ss_pred CCCceEEEecccC--ChHHHHhhhCCCCEEeeCCce-eceeEEEecCCc-----hhHHHHHHHHHHHHHh---cCCCCCE
Q 037717 194 RPDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRR-YPVELFYTKAPE-----VDYIEAAIVTALQIHV---NEPTGDI 262 (582)
Q Consensus 194 ~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~-~~v~~~~~~~~~-----~~~~~~~~~~~~~i~~---~~~~g~i 262 (582)
. .|+++||||+ +.+.|++||++++++.++|+. +|++.+|..... .++.......++..+. ...++++
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 2 3899999999 677899999999999999985 999999975432 2333332222333332 2235799
Q ss_pred EEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCC-CCCCcEEEEeCCCCccccccCCeeEEE
Q 037717 263 LVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPT-PERARKVVLATNIAETSLTIDGIKYVI 341 (582)
Q Consensus 263 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~-~~g~~kVivaT~iae~gidIp~v~~VI 341 (582)
|||+||+++++.+++.|.+.. +++.+.++||+|++.++ +++.| ++|+++||||||+||+|||||+|++||
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 999999999999999998632 36889999999998643 33343 679999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhhhhhhHhhhh-----HHHHHHHHh
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIWMTILCQKYN-----ELIWKMLSL 416 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~~~pei~r~~-----~~~L~l~~l 416 (582)
|+|+++... +..++ ..|+|+++|.||+|||||.++|.||+||+++++. | |.+.+ .++|+++++
T Consensus 470 D~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~-----p-I~ri~~~~L~~~vL~lk~~ 537 (675)
T PHA02653 470 DTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK-----P-IKRIDSEFLHNYILYAKYF 537 (675)
T ss_pred ECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH-----H-HHHHhHHHHHHHHHHHHHc
Confidence 999887653 33443 4599999999999999999999999999998752 3 55554 889999999
Q ss_pred cCCccccccCCCCchHHHHHHHHHHHHHcCCCcCCCccchh--chhhhcCCCChHHHHHHHhcccc
Q 037717 417 FSNVLVNFDFIDPPLEEALLKAFELLYALGALNKAGQLTRV--GRQMAEFPIDPKLSKTIVSLDKY 480 (582)
Q Consensus 417 ~~~~~~~f~~~~~p~~~~i~~al~~L~~lgal~~~~~lT~l--G~~~a~lpl~p~~~k~l~~~~~~ 480 (582)
|++.. .+.|+|||+.+++.+|++.|..+||+++ +||.+ |+.++-+ +.||+++.|+..
T Consensus 538 g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~ 596 (675)
T PHA02653 538 NLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGIL 596 (675)
T ss_pred CCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHh
Confidence 99644 4559999999999999999999998754 89999 9999999 999999988653
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-44 Score=406.55 Aligned_cols=482 Identities=17% Similarity=0.146 Sum_probs=321.2
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
...++++|.++++.+.++++++++||||||||+++.+++++ |+|.+|.+.++.+.+.. ..|..++.
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~ 97 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKI 97 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEE
Confidence 34579999999999999999999999999999887776554 99999999988887522 34555655
Q ss_pred EEeeccc---CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccC-----CCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 131 SIRFEDC---TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQE-----RTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 131 ~v~~~~~---~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~He-----R~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
.+...+. .....+|+++||+.+...+.+.+. +.++++|||||+|. |+...+.++..++ ..++++|+|+
T Consensus 98 ~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~---~~~~~~riI~ 174 (674)
T PRK01172 98 SIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR---YVNPDARILA 174 (674)
T ss_pred EeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHH---hcCcCCcEEE
Confidence 4432111 113579999999998887776665 89999999999994 4444555544443 3457899999
Q ss_pred ecccC-ChHHHHhhhCCCCEEeeCCceeceeEEEe--cCCch---hHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHH
Q 037717 202 SSATL-DAEKFSDYFGSAPIFKIPGRRYPVELFYT--KAPEV---DYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERA 275 (582)
Q Consensus 202 ~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~--~~~~~---~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 275 (582)
||||+ |++.+++|++ ++.+....|+.|++.... ..... ......+...+.- ....++++||||+++++++.+
T Consensus 175 lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~vLVF~~sr~~~~~~ 252 (674)
T PRK01172 175 LSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKE-TVNDGGQVLVFVSSRKNAEDY 252 (674)
T ss_pred EeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHH-HHhCCCcEEEEeccHHHHHHH
Confidence 99999 9999999997 445555667777664322 11000 0000001111111 123468999999999999999
Q ss_pred HHHHHHhhhccCCC----------------CCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeE
Q 037717 276 EEILKQRTRGLGTK----------------IAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKY 339 (582)
Q Consensus 276 ~~~L~~~~~~~~~~----------------~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~ 339 (582)
++.|.+.......- .-..-+..+||+|++++|+.+++.|++|.++|||||+++++|+|+|+..+
T Consensus 253 a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~V 332 (674)
T PRK01172 253 AEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLV 332 (674)
T ss_pred HHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEE
Confidence 99997754321100 00123677899999999999999999999999999999999999999888
Q ss_pred EEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeC-hhh---hhhhhh-hhhHhhhh----
Q 037717 340 VIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYT-LHN---YHRIWM-TILCQKYN---- 407 (582)
Q Consensus 340 VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~-~~~---~~~~~~-~pei~r~~---- 407 (582)
||+ ....|+. ....|+|+++|.||+|||||.| .|.++.+.. ..+ +.+++. .|+...+.
T Consensus 333 II~----~~~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~ 402 (674)
T PRK01172 333 IVR----DITRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQ 402 (674)
T ss_pred EEc----CceEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCc
Confidence 883 2334432 2335799999999999999998 577776643 222 233442 23221111
Q ss_pred ----HHHHHHHHhcC----Cccccc---cCC--CCch---HHHHHHHHHHHHHcCCCcCCC--ccchhchhhhcCCCChH
Q 037717 408 ----ELIWKMLSLFS----NVLVNF---DFI--DPPL---EEALLKAFELLYALGALNKAG--QLTRVGRQMAEFPIDPK 469 (582)
Q Consensus 408 ----~~~L~l~~l~~----~~~~~f---~~~--~~p~---~~~i~~al~~L~~lgal~~~~--~lT~lG~~~a~lpl~p~ 469 (582)
..+|...+.|. +++..| .|+ .+++ .+.++.+++.|.+.|+|+.++ .+|++|+.+|++|++|.
T Consensus 403 ~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~ 482 (674)
T PRK01172 403 RKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPE 482 (674)
T ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHH
Confidence 11233333332 334333 444 3322 577999999999999998654 68999999999999999
Q ss_pred HHHHHHhccccc-ChHHHHHHHHhhccCCCccccChhhHHH--HHHHhhhcc-CCCCCcHHHHHHHHHHHHHcCCcHHHH
Q 037717 470 LSKTIVSLDKYK-CSDEIITIAAMLFVGNSIFYRPKDKQIY--ADNARMNFH-LGDVGDRIALLRVYNCWRECNYSTEWC 545 (582)
Q Consensus 470 ~~k~l~~~~~~~-c~~~~l~i~a~l~~~~~~f~~~~~~~~~--~~~~~~~f~-~~~~sD~~~~l~~~~~~~~~~~~~~~c 545 (582)
.++.+..+..-. ....++.+++.... | .|....+. ......... .+....+.-..-+.+.|.+...-..-+
T Consensus 483 t~~~~~~~l~~~~~~~~~l~~~~~~~e----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~ 557 (674)
T PRK01172 483 SALILKSAFDHDYDEDLALYYISLCRE----I-IPANTRDDYYAMEFLEDIGVIDGDISAAKTAMVLRGWISEASMQKIT 557 (674)
T ss_pred HHHHHHHHhhccCCHHHHHHHhhcCcc----c-cccccchHHHHHHHHHHhccccchhHHHHHHHHHHHHHcCCCHHHHH
Confidence 999998887654 34455555544333 2 22211111 111111110 011123445555678888766555667
Q ss_pred HHcCCCHHHHHHHHHHHHHHH
Q 037717 546 RENYIQVSSMKRARDIRDQLE 566 (582)
Q Consensus 546 ~~~~l~~~~l~~~~~~~~ql~ 566 (582)
..+.+..+.++...+-..++.
T Consensus 558 ~~~~~~~g~l~~~~~~~~~~~ 578 (674)
T PRK01172 558 DTYGIAPGDVQARASSADWIS 578 (674)
T ss_pred HHhCCChHHHHHHHHHHHHHH
Confidence 777777777776655555554
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-43 Score=402.77 Aligned_cols=502 Identities=17% Similarity=0.184 Sum_probs=330.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHH-HhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHh
Q 037717 54 LEMLQEERKTLPIYPFWEELLQA-VSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEM 120 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~-i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~ 120 (582)
..+..+.+.---+++.|.+.++. +.+++++++++|||||||.....+++. |+|.+|.+...++.. +
T Consensus 12 ~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~-~ 90 (737)
T PRK02362 12 VIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFER-F 90 (737)
T ss_pred HHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHH-h
Confidence 34444444444578899999887 889999999999999999766544433 999999999988874 3
Q ss_pred CCccCcEEeEEEee---cccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc-----CCCcchhHHHHHHHHHH
Q 037717 121 GVKLGHEVGYSIRF---EDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLI 191 (582)
Q Consensus 121 ~~~~g~~vgy~v~~---~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~ 191 (582)
+ ..|..++-.... +.......+|+++||+.+...+.+... +.++++|||||+| +|+...+.++..++.
T Consensus 91 ~-~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~-- 167 (737)
T PRK02362 91 E-ELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR-- 167 (737)
T ss_pred h-cCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHh--
Confidence 2 124344322111 111123578999999998877765443 8899999999999 466666776666654
Q ss_pred hhCCCceEEEecccC-ChHHHHhhhCCCCEEeeCCceeceeEEEe--cC----CchhHH-----HHHHHHHHHHHhcCCC
Q 037717 192 NYRPDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVELFYT--KA----PEVDYI-----EAAIVTALQIHVNEPT 259 (582)
Q Consensus 192 ~~~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~--~~----~~~~~~-----~~~~~~~~~i~~~~~~ 259 (582)
..++.|+|++|||+ |++.+++|++.. .+....|+.++..... .. .....+ ......+.... ..+
T Consensus 168 -~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 243 (737)
T PRK02362 168 -LNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEG 243 (737)
T ss_pred -cCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcC
Confidence 45789999999999 999999999743 2333334333332211 00 000000 12222333322 246
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhcc-------------------CC-----CC---CCeEEEEecCCCCHHHHHHhcC
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGL-------------------GT-----KI---AELIICPIYANLPTELQAKIFE 312 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~-------------------~~-----~~---~~~~v~~lh~~l~~~~r~~v~~ 312 (582)
+++||||+++++++.+++.|....... .. .+ -..-+..+||+|++++|+.|++
T Consensus 244 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~ 323 (737)
T PRK02362 244 GQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVED 323 (737)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHH
Confidence 899999999999999999887643210 00 00 0124778899999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEee
Q 037717 313 PTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLY 389 (582)
Q Consensus 313 ~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~ 389 (582)
.|++|.++|||||+++++|||+|++++|| .....||+..|. .|+|..+|.||+|||||.|- |.|+.+.
T Consensus 324 ~Fr~G~i~VLvaT~tla~GvnlPa~~VVI----~~~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 324 AFRDRLIKVISSTPTLAAGLNLPARRVII----RDYRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HHHcCCCeEEEechhhhhhcCCCceEEEE----ecceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999 335578875442 58999999999999999983 9999998
Q ss_pred Chhh-----hhhhhh-hhhHhhhh--------HHHHHHHHhcC----Cccccc---cCCCC------chHHHHHHHHHHH
Q 037717 390 TLHN-----YHRIWM-TILCQKYN--------ELIWKMLSLFS----NVLVNF---DFIDP------PLEEALLKAFELL 442 (582)
Q Consensus 390 ~~~~-----~~~~~~-~pei~r~~--------~~~L~l~~l~~----~~~~~f---~~~~~------p~~~~i~~al~~L 442 (582)
...+ |+.+.. .|+-..+. ..++...+.|. .++..| .|+.. ...+.++.+++.|
T Consensus 395 ~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L 474 (737)
T PRK02362 395 KSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFL 474 (737)
T ss_pred cCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHH
Confidence 6531 233332 22221111 23333333332 222222 33322 2346689999999
Q ss_pred HHcCCCcCCC---ccchhchhhhcCCCChHHHHHHHhccccc---ChHHHHHHHHhhccCCCccccChhhHHHHHHH--h
Q 037717 443 YALGALNKAG---QLTRVGRQMAEFPIDPKLSKTIVSLDKYK---CSDEIITIAAMLFVGNSIFYRPKDKQIYADNA--R 514 (582)
Q Consensus 443 ~~lgal~~~~---~lT~lG~~~a~lpl~p~~~k~l~~~~~~~---c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~--~ 514 (582)
.+.|+|+.++ .+|++|++++.++++|..+..+..+.... ....++.+++......++.+++.+........ +
T Consensus 475 ~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~ 554 (737)
T PRK02362 475 ERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEH 554 (737)
T ss_pred HHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhc
Confidence 9999998765 48999999999999999999998876643 33456666665444344545444322211111 0
Q ss_pred -hhc--------cCCCCCc---HHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Q 037717 515 -MNF--------HLGDVGD---RIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARV 572 (582)
Q Consensus 515 -~~f--------~~~~~sD---~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~ 572 (582)
..+ ....+.+ ++-..-+.+.|.+...-.+.+.++++....++.+.+-..+|...+.++
T Consensus 555 ~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i 624 (737)
T PRK02362 555 EDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERL 624 (737)
T ss_pred ccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 001 1101111 122234567888776667788888898777776666666665555443
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-39 Score=371.47 Aligned_cols=500 Identities=16% Similarity=0.104 Sum_probs=321.2
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHH-HhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQA-VSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVS 117 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~-i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va 117 (582)
....+..+.+.---.++.|.+++.. +.+++++++++|||||||.....+++. |++.+|.+...++.
T Consensus 10 ~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~ 89 (720)
T PRK00254 10 ERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFK 89 (720)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHH
Confidence 4445555555555678899999975 889999999999999999665444332 99999999988876
Q ss_pred HHhCCccCcEEeEEEeec---ccCCCCccEEEEChHHHHHHHHcCC-CCCCCCceEeeccc-----CCCcchhHHHHHHH
Q 037717 118 QEMGVKLGHEVGYSIRFE---DCTSDKTVLKYMTDCMLLREIVIEP-SLESYSVLIVDEAQ-----ERTLSTDNLFGLLK 188 (582)
Q Consensus 118 ~~~~~~~g~~vgy~v~~~---~~~~~~t~I~~~T~g~Ll~~l~~~~-~l~~~~~vViDE~H-----eR~~~~d~ll~~lk 188 (582)
. +. ..|..|+...... .....+.+|+++||+.+...+.... .++++++|||||+| +|+...+.++..
T Consensus 90 ~-~~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~-- 165 (720)
T PRK00254 90 D-WE-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTH-- 165 (720)
T ss_pred H-Hh-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHh--
Confidence 4 21 2344444322111 1112357899999999987765443 38999999999999 355444444332
Q ss_pred HHHhhCCCceEEEecccC-ChHHHHhhhCCCCEEeeCCceeceeE--EEe-----cCCch-hHHHHHHHHHHHHHhcCCC
Q 037717 189 DLINYRPDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVEL--FYT-----KAPEV-DYIEAAIVTALQIHVNEPT 259 (582)
Q Consensus 189 ~~~~~~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~--~~~-----~~~~~-~~~~~~~~~~~~i~~~~~~ 259 (582)
..++.|+|++|||+ |++.+++|++.. .+....|+.|... ++. ..... .+.......+.+... .+
T Consensus 166 ----l~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~ 238 (720)
T PRK00254 166 ----MLGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KG 238 (720)
T ss_pred ----cCcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hC
Confidence 23578999999999 999999999753 3333444444422 111 11111 111111222222222 36
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccC----------------CCC--------CCeEEEEecCCCCHHHHHHhcCCCC
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLG----------------TKI--------AELIICPIYANLPTELQAKIFEPTP 315 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~----------------~~~--------~~~~v~~lh~~l~~~~r~~v~~~~~ 315 (582)
+++||||++++.++.++..|...+...- ... -...+..+||+|++++|..+++.|+
T Consensus 239 ~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~ 318 (720)
T PRK00254 239 KGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFR 318 (720)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999998877754321100 000 0124888999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChh
Q 037717 316 ERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLH 392 (582)
Q Consensus 316 ~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~ 392 (582)
+|.++|||||+++++|||+|++++|| .....|+ ..+ ..+++.++|.||+|||||.| .|.++.+.+..
T Consensus 319 ~G~i~VLvaT~tLa~Gvnipa~~vVI----~~~~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 319 EGLIKVITATPTLSAGINLPAFRVII----RDTKRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CCCCeEEEeCcHHhhhcCCCceEEEE----CCceEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 99999999999999999999999999 3334554 112 23467889999999999986 49999888653
Q ss_pred h----hhhhhh-hhhHhhhh--------HHHHHHHHhc-CCccc------cccC--CCCch----HHHHHHHHHHHHHcC
Q 037717 393 N----YHRIWM-TILCQKYN--------ELIWKMLSLF-SNVLV------NFDF--IDPPL----EEALLKAFELLYALG 446 (582)
Q Consensus 393 ~----~~~~~~-~pei~r~~--------~~~L~l~~l~-~~~~~------~f~~--~~~p~----~~~i~~al~~L~~lg 446 (582)
. ++.+.. .||-.... ..++.....+ +.+.. ...| ...|+ .+.++.++..|.+.|
T Consensus 389 ~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~ 468 (720)
T PRK00254 389 EPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENE 468 (720)
T ss_pred chHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCC
Confidence 3 333322 23322111 2222222222 22211 1112 11222 356788999999999
Q ss_pred CCcCC----CccchhchhhhcCCCChHHHHHHHhcccc----cChHHHHHHHHhhccCCCccccChhhHHHH---HHHhh
Q 037717 447 ALNKA----GQLTRVGRQMAEFPIDPKLSKTIVSLDKY----KCSDEIITIAAMLFVGNSIFYRPKDKQIYA---DNARM 515 (582)
Q Consensus 447 al~~~----~~lT~lG~~~a~lpl~p~~~k~l~~~~~~----~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~---~~~~~ 515 (582)
+|+.+ ..+|++|++++.++++|..++.+..+..- .....++.+++......++..++.+..... .....
T Consensus 469 ~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~ 548 (720)
T PRK00254 469 FIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMED 548 (720)
T ss_pred CeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcc
Confidence 99643 35799999999999999999998877642 356677777776665444555443322111 11111
Q ss_pred hccC--C--CCCcH------HHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Q 037717 516 NFHL--G--DVGDR------IALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARV 572 (582)
Q Consensus 516 ~f~~--~--~~sD~------~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~ 572 (582)
++.. + ...|+ +-..-+.+.|.+...-..-++++.+....++.+.+-..+|...+.++
T Consensus 549 ~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~i 615 (720)
T PRK00254 549 RLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIEL 615 (720)
T ss_pred cccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 00122 22334567788665556677788888888888777777777766554
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-39 Score=337.02 Aligned_cols=308 Identities=20% Similarity=0.200 Sum_probs=231.1
Q ss_pred HHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------------------chHHHHHHHHHHHH
Q 037717 59 EERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------------------PRWVAAMSVAARVS 117 (582)
Q Consensus 59 ~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------------------P~r~~a~~~a~~va 117 (582)
..-..-|.. .|..-+..+.+++++|..|.|||||| +++|.+++- |+|++|.|+.+. +
T Consensus 108 ~~g~~~Ptp-IQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~-~ 185 (519)
T KOG0331|consen 108 EQGFEKPTP-IQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAE-A 185 (519)
T ss_pred hcCCCCCch-hhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHH-H
Confidence 333344443 45556677788899999999999999 788876431 999999999664 4
Q ss_pred HHhCCccC--cEEeEEE-e---ecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 118 QEMGVKLG--HEVGYSI-R---FEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 118 ~~~~~~~g--~~vgy~v-~---~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
.+.+..++ ..+-|+- + .......+.+|+++|||+|++++..... |++++|+|+|||+ |++++++--.+-+.+
T Consensus 186 ~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il 264 (519)
T KOG0331|consen 186 REFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKIL 264 (519)
T ss_pred HHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHH
Confidence 55555544 2332321 1 1123345789999999999999987776 9999999999999 999999877776666
Q ss_pred Hhh-CCCceEEEecccC--ChHHHHhhhCCCCEEeeCCce------eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCC
Q 037717 191 INY-RPDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRR------YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGD 261 (582)
Q Consensus 191 ~~~-~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~------~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 261 (582)
.+. +++.|++++|||+ .+..|++-|-..|+-..-|.. +.+.......+ ..-....+..++..+....+++
T Consensus 265 ~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~K 343 (519)
T KOG0331|consen 265 SQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGK 343 (519)
T ss_pred HhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCc
Confidence 666 5666899999999 778888755445543333321 11111111111 1122334445555555666799
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEE
Q 037717 262 ILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVI 341 (582)
Q Consensus 262 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VI 341 (582)
+||||.+++.|++++..|.. .++.+.++||+.++++|+.+++.|++|+..||||||+|++|||||+|++||
T Consensus 344 vIIFc~tkr~~~~l~~~l~~---------~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 344 VIIFCETKRTCDELARNLRR---------KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred EEEEecchhhHHHHHHHHHh---------cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 99999999999999999987 458899999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhhh
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHRI 397 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~~ 397 (582)
.||++ -+..+|+||+||+||.+. |..|.+|+...+...
T Consensus 415 --------nydfP----------~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a 453 (519)
T KOG0331|consen 415 --------NYDFP----------NNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLA 453 (519)
T ss_pred --------eCCCC----------CCHHHHHhhcCccccCCCCceEEEEEeHHHHHHH
Confidence 55544 445579999999999775 999999999887653
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.1e-37 Score=338.71 Aligned_cols=298 Identities=18% Similarity=0.207 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
...+.|.+++..+.++++++++||||||||+.....+++ |+|.+|.|++..+........+..+.
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~ 105 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 356789999999999999999999999999553333221 99999999988665432211122222
Q ss_pred EEEeec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHH-hhCCCceEEE
Q 037717 130 YSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLI-NYRPDLKLLI 201 (582)
Q Consensus 130 y~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~-~~~~~~kii~ 201 (582)
.-..+. .....+++|+++|||+|.+.+..... +.++++||+|||| +.++..+.-.+ +.++ ...++.++++
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l-~~i~~~~~~~~q~ll 183 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAI-DAIIRQAPARRQTLL 183 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHH-HHHHHhCCcccEEEE
Confidence 111111 11235689999999999999876654 8999999999999 44444433222 2333 2445789999
Q ss_pred ecccC--ChHHHHhhhCCCCE-EeeCCc--eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Q 037717 202 SSATL--DAEKFSDYFGSAPI-FKIPGR--RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAE 276 (582)
Q Consensus 202 ~SAT~--~~~~~~~~f~~~~v-~~i~gr--~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 276 (582)
+|||+ +...+++.|...|. +.+... ...++.+|...+..+. ...+..+.....++++||||+++++++.++
T Consensus 184 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 184 FSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDER----LPALQRLLLHHQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred EEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHH----HHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 99999 55667766655543 333221 2224445544433332 223333334445678999999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCC
Q 037717 277 EILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTG 356 (582)
Q Consensus 277 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~ 356 (582)
+.|.+ .++.+..+||++++++|+.+++.|++|..+|||||+++++|||+|++++||++++
T Consensus 260 ~~L~~---------~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~----------- 319 (460)
T PRK11776 260 DALNA---------QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL----------- 319 (460)
T ss_pred HHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC-----------
Confidence 99987 4678999999999999999999999999999999999999999999999996554
Q ss_pred cccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 357 MESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 357 ~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|.+..+|.||+||+||.|. |.||.++++.+..
T Consensus 320 -------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 320 -------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred -------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 4566789999999999985 9999999987654
No 19
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=323.38 Aligned_cols=427 Identities=19% Similarity=0.151 Sum_probs=309.5
Q ss_pred ccCCcccccchHHHHHHHhcCCCChHHHHHHH-HHHhCCCeEEEECCCCCchhchHh-----hhhcc--------chHHH
Q 037717 43 ELPNKSVVKSTLEMLQEERKTLPIYPFWEELL-QAVSGYPVLAIVGETGSGKTTQIP-----QYLYE--------PRWVA 108 (582)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~r~~lPi~~~~~~il-~~i~~~~~viv~a~TGSGKTt~ip-----~~ll~--------P~r~~ 108 (582)
..-.+++...+++.+.+.+..--+-+.|--.+ .-+.++++.+|+.+|+||||.... ..+-. |.-++
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 34556677788899988885544444444444 447889999999999999995543 33332 99999
Q ss_pred HHHHHHHHHHHhCCccCcEEeEEEee-----c-----ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeeccc----
Q 037717 109 AMSVAARVSQEMGVKLGHEVGYSIRF-----E-----DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQ---- 174 (582)
Q Consensus 109 a~~~a~~va~~~~~~~g~~vgy~v~~-----~-----~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H---- 174 (582)
|.|-...+...+ .++|..+...|.. . ..++.+++|+++|.+-+-..+..+..+.+++.|||||+|
T Consensus 274 ANQKy~dF~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 274 ANQKYEDFKERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred hcchHHHHHHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccc
Confidence 999988887766 4555544332221 1 235678999999998887777777789999999999999
Q ss_pred -CCCcchhHHHHHHHHHHhhCCCceEEEecccC-ChHHHHhhhCCCCEEeeCCceeceeEEEecCC----chhHHHHHHH
Q 037717 175 -ERTLSTDNLFGLLKDLINYRPDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVELFYTKAP----EVDYIEAAIV 248 (582)
Q Consensus 175 -eR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~----~~~~~~~~~~ 248 (582)
|||...|-+++.||.+ .|+.|+|.+|||+ |++.+++.++ +..+..+.|+.|++-|..-.. .++.+...+.
T Consensus 353 eERG~RLdGLI~RLr~l---~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k 428 (830)
T COG1202 353 EERGPRLDGLIGRLRYL---FPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVK 428 (830)
T ss_pred hhcccchhhHHHHHHHh---CCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHH
Confidence 9999999999999874 5799999999999 9999999997 566777899999887755433 2223222222
Q ss_pred HHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCC
Q 037717 249 TALQIHV-NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNI 327 (582)
Q Consensus 249 ~~~~i~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~i 327 (582)
.-+.... ..-.|++|||..|++.|+.++..|.. .++.+.|+|+||+..+|+.++..|.++.+.+||+|..
T Consensus 429 ~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~---------kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAA 499 (830)
T COG1202 429 REFSTESSKGYRGQTIVFTYSRRRCHELADALTG---------KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAA 499 (830)
T ss_pred HHHhhhhccCcCCceEEEecchhhHHHHHHHhhc---------CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhh
Confidence 2222211 22349999999999999999999987 5788999999999999999999999999999999999
Q ss_pred CccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChh-hhhhhh-----
Q 037717 328 AETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLH-NYHRIW----- 398 (582)
Q Consensus 328 ae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~-~~~~~~----- 398 (582)
++.|+|+|+-.+|.++ -.+...|.|..++.||.|||||++ .|+.|.|.-.. .|..-+
T Consensus 500 L~AGVDFPASQVIFEs--------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEd 565 (830)
T COG1202 500 LAAGVDFPASQVIFES--------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETED 565 (830)
T ss_pred hhcCCCCchHHHHHHH--------------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHH
Confidence 9999999966655532 225568999999999999999998 48888886432 332221
Q ss_pred -------h-hhhHhhhh-------HHHHHHHHhcCCc-------cccccCCCCchHHHHHHHHHHHHHcCCCcCCC---c
Q 037717 399 -------M-TILCQKYN-------ELIWKMLSLFSNV-------LVNFDFIDPPLEEALLKAFELLYALGALNKAG---Q 453 (582)
Q Consensus 399 -------~-~pei~r~~-------~~~L~l~~l~~~~-------~~~f~~~~~p~~~~i~~al~~L~~lgal~~~~---~ 453 (582)
+ .||-...+ .-+|. +.++.+ +.+..+-. .-..+.++..|.+.|+|+.+| +
T Consensus 566 evA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~---~~~~~k~l~~Lee~g~i~~~G~~v~ 640 (830)
T COG1202 566 EVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGA---AFDPKKALSKLEEYGMIKKKGNIVR 640 (830)
T ss_pred HHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccc---cCCHHHHHHHHHhcCCeeccCCEee
Confidence 1 13222111 22222 222211 11111100 122478999999999999876 6
Q ss_pred cchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccCh
Q 037717 454 LTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPK 504 (582)
Q Consensus 454 lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~ 504 (582)
+|+.|+.++..-+.|..|-.|..+. .. ..+.+-|++.|.-....++.+.
T Consensus 641 ~T~yGrava~~Fl~p~~a~~Ir~~v-~~-~~~pl~i~~~l~pfE~ayls~~ 689 (830)
T COG1202 641 PTPYGRAVAMSFLGPSEAEFIREGV-LA-SMDPLRIAAELEPFENAYLSGF 689 (830)
T ss_pred eccccceeEEeecCchHHHHHHHhh-hc-cCChHhHhhccccccccccChH
Confidence 9999999999999999999998886 22 2234566777665444444443
No 20
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-38 Score=309.07 Aligned_cols=300 Identities=21% Similarity=0.241 Sum_probs=226.9
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc-----------chHHHHHHHHHHHHHHhCCccCc
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE-----------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~-----------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
-..|. +.|.+.+..+.+++++|..|+|||||| +.+|.. |++ |+|++|.|+++.+ +.+|...|.
T Consensus 81 ~~~PT-~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~igl 158 (476)
T KOG0330|consen 81 WKKPT-KIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGL 158 (476)
T ss_pred cCCCc-hhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCe
Confidence 34444 456677778888888999999999999 556643 443 9999999998754 445555555
Q ss_pred EEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCce
Q 037717 127 EVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLK 198 (582)
Q Consensus 127 ~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~k 198 (582)
.+..-+.+.+ ..+.+.+|+++|||.|.+++.+... |.+++++|+|||+ |-+++||.-.+=+.+-...++.|
T Consensus 159 r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erq 237 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQ 237 (476)
T ss_pred EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccce
Confidence 4443333322 3457889999999999999984443 8999999999999 99999986655444444567899
Q ss_pred EEEecccC--ChHHHHhhhCCCCEEeeCCcee----ceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Q 037717 199 LLISSATL--DAEKFSDYFGSAPIFKIPGRRY----PVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEI 272 (582)
Q Consensus 199 ii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~----~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 272 (582)
.+++|||| ++.++..---+.|+-......| .++.+|+..+..+. +. .++.+.....++++||||++....
T Consensus 238 t~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K-~~---yLV~ll~e~~g~s~iVF~~t~~tt 313 (476)
T KOG0330|consen 238 TFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK-DT---YLVYLLNELAGNSVIVFCNTCNTT 313 (476)
T ss_pred EEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc-ch---hHHHHHHhhcCCcEEEEEeccchH
Confidence 99999999 7777775444444433222222 23444554443322 11 233344445568999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeec
Q 037717 273 ERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYN 352 (582)
Q Consensus 273 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd 352 (582)
+.++-.|+. .++...++||.|+++.|...++.|++|.+.|++|||+|++|+|||.|++|||+.+
T Consensus 314 ~~la~~L~~---------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------- 377 (476)
T KOG0330|consen 314 RFLALLLRN---------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI------- 377 (476)
T ss_pred HHHHHHHHh---------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC-------
Confidence 999999987 5889999999999999999999999999999999999999999999999995443
Q ss_pred CCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 353 PKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 353 ~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|.+-.+|+||.||+||+|. |+.+.|.+..+.+
T Consensus 378 -----------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 378 -----------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred -----------CCcHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 4455679999999999995 9999999995544
No 21
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=341.14 Aligned_cols=482 Identities=18% Similarity=0.184 Sum_probs=313.2
Q ss_pred CChHHHHHHHH-HHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 65 PIYPFWEELLQ-AVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 65 Pi~~~~~~il~-~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
-++..|++.+. .+.++++++|++|||||||..+-..++. |.|.+|.+....+.. -..+|..|+.
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~--~~~~GirV~~ 108 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSR--LEELGIRVGI 108 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhh--HHhcCCEEEE
Confidence 34555555554 4556799999999999999776666554 999999999998881 1233444444
Q ss_pred EEeecc---cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc----C-CCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 131 SIRFED---CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ----E-RTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 131 ~v~~~~---~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H----e-R~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
..+.-+ ..-.+++|+|+|++.+-..+.+.+. +..+++|||||+| + ||...+.+++.++. .++.+|+|+
T Consensus 109 ~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~---~~~~~rivg 185 (766)
T COG1204 109 STGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR---LNELIRIVG 185 (766)
T ss_pred ecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh---hCcceEEEE
Confidence 332212 1235789999999999887777666 8899999999999 5 99999988887776 445689999
Q ss_pred ecccC-ChHHHHhhhCCCCEEeeCCceec--------eeEEEecCCch----hHHHHHHHHHHHHHhcCCCCCEEEEcCC
Q 037717 202 SSATL-DAEKFSDYFGSAPIFKIPGRRYP--------VELFYTKAPEV----DYIEAAIVTALQIHVNEPTGDILVFLTG 268 (582)
Q Consensus 202 ~SAT~-~~~~~~~~f~~~~v~~i~gr~~~--------v~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~g~iLVFl~~ 268 (582)
+|||+ |++.+++|++..++ ....++.| ..+.+...... ...+.....+... -..+|++|||+++
T Consensus 186 LSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~--~~~~~qvLvFv~s 262 (766)
T COG1204 186 LSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLES--LAEGGQVLVFVHS 262 (766)
T ss_pred EeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHH--HhcCCeEEEEEec
Confidence 99999 99999999987655 22222211 11222111111 1112222222222 2447899999999
Q ss_pred HHHHHHHHHHHHHhhhccC---------CCCC-------------------CeEEEEecCCCCHHHHHHhcCCCCCCCcE
Q 037717 269 QDEIERAEEILKQRTRGLG---------TKIA-------------------ELIICPIYANLPTELQAKIFEPTPERARK 320 (582)
Q Consensus 269 ~~~i~~~~~~L~~~~~~~~---------~~~~-------------------~~~v~~lh~~l~~~~r~~v~~~~~~g~~k 320 (582)
++.+...++.+.....+.. .... ..-+..+|+||+.++|+.+++.|+.|.++
T Consensus 263 R~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik 342 (766)
T COG1204 263 RKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK 342 (766)
T ss_pred CchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce
Confidence 9999999999985322110 0000 11245569999999999999999999999
Q ss_pred EEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEee-Chhhhhh
Q 037717 321 VVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLY-TLHNYHR 396 (582)
Q Consensus 321 VivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~-~~~~~~~ 396 (582)
||+||++++.|+|.|.-++|| .....||+..| ..++++.++.||+|||||+| -|..+.+- +...-+.
T Consensus 343 Vlv~TpTLA~GVNLPA~~VII----k~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 343 VLVSTPTLAAGVNLPARTVII----KDTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred EEEechHHhhhcCCcceEEEE----eeeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhH
Confidence 999999999999999888888 77888988444 45699999999999999999 26666655 3222221
Q ss_pred hhh-----hhhHhhhh---HHHHHHHHhcC---Ccccc------c---cCCC------CchHHHHHHHHHHHHHcC-CCc
Q 037717 397 IWM-----TILCQKYN---ELIWKMLSLFS---NVLVN------F---DFID------PPLEEALLKAFELLYALG-ALN 449 (582)
Q Consensus 397 ~~~-----~pei~r~~---~~~L~l~~l~~---~~~~~------f---~~~~------~p~~~~i~~al~~L~~lg-al~ 449 (582)
..+ .||..... +..+..-.+++ .+... | -|.. --....+.++++.|.+.+ .++
T Consensus 414 ~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~ 493 (766)
T COG1204 414 LAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILD 493 (766)
T ss_pred HHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceee
Confidence 111 25542221 11111111111 01000 0 0111 124567789999999986 555
Q ss_pred CC---CccchhchhhhcCCCChHHHHHHHhcccccChH-HHHHHHHhhccCCCccccChhhHHHHHHHhhhccCCCCCcH
Q 037717 450 KA---GQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSD-EIITIAAMLFVGNSIFYRPKDKQIYADNARMNFHLGDVGDR 525 (582)
Q Consensus 450 ~~---~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~-~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~~f~~~~~sD~ 525 (582)
.. -..|++|+.+++++++|..++.+......--.+ ..+.+...++..++....+...+...+.....+. ..+|.
T Consensus 494 ~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~~--~~~~~ 571 (766)
T COG1204 494 ADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELE--EQSDY 571 (766)
T ss_pred ccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHHH--hcchH
Confidence 43 368999999999999999999998776543321 3333444444423332222211111111011110 01222
Q ss_pred H-------------HHH------HHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHH
Q 037717 526 I-------------ALL------RVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQL 565 (582)
Q Consensus 526 ~-------------~~l------~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql 565 (582)
+ .++ ..+..|.+.......|.+.++....+.....-+.++
T Consensus 572 ~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~ 630 (766)
T COG1204 572 LLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWL 630 (766)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhh
Confidence 1 122 345668888888889999999999999999998888
No 22
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-36 Score=335.04 Aligned_cols=331 Identities=18% Similarity=0.194 Sum_probs=227.0
Q ss_pred CCCCCCccccccCCcccccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhc--------
Q 037717 33 DGDNFDEFESELPNKSVVKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLY-------- 102 (582)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll-------- 102 (582)
.|.+.+.+...+.+..-++.-.+.+.+. .--..++.|.+.+..+..++++|++||||||||. ++|.+..
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~-g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~ 199 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNA-GFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLR 199 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccccc
Confidence 4555444433333222222333334333 3334567888889999999999999999999994 5665321
Q ss_pred ----------cchHHHHHHHHHHHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCC
Q 037717 103 ----------EPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESY 165 (582)
Q Consensus 103 ----------~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~ 165 (582)
-|+|++|.|+...+.. ++...+..+........ ......+|+|+|||+|++.+..... +.++
T Consensus 200 ~~~gp~~LIL~PTreLa~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 200 YGDGPIVLVLAPTRELAEQIREQCNK-FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CCCCcEEEEECChHHHHHHHHHHHHH-HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 1999999998776544 33322222211111111 1234578999999999999876654 8999
Q ss_pred CceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC--ChHHHHhhh-CCCCEEeeCCce-----eceeEEEecC
Q 037717 166 SVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL--DAEKFSDYF-GSAPIFKIPGRR-----YPVELFYTKA 237 (582)
Q Consensus 166 ~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~--~~~~~~~~f-~~~~v~~i~gr~-----~~v~~~~~~~ 237 (582)
++||||||| |.++..+...+.+.+...+++.+++++|||+ +.+.+++.+ ...++....+.. ..+...+...
T Consensus 279 ~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~ 357 (545)
T PTZ00110 279 TYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVV 357 (545)
T ss_pred cEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEE
Confidence 999999999 6666666555444444566889999999999 455666654 334543222211 1222222111
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC
Q 037717 238 PEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER 317 (582)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g 317 (582)
...+. ...+..++.... ...+++||||++++.++.+++.|.. .++.+..+||++++++|+.+++.|++|
T Consensus 358 ~~~~k-~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~---------~g~~~~~ihg~~~~~eR~~il~~F~~G 426 (545)
T PTZ00110 358 EEHEK-RGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL---------DGWPALCIHGDKKQEERTWVLNEFKTG 426 (545)
T ss_pred echhH-HHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH---------cCCcEEEEECCCcHHHHHHHHHHHhcC
Confidence 11111 122222222222 1467999999999999999999976 467788999999999999999999999
Q ss_pred CcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 318 ARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 318 ~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
..+|||||+++++|||||+|++||++++ |.+..+|.||+||+||.|. |.||.++++.+..
T Consensus 427 ~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 427 KSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred CCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 9999999999999999999999995443 5567789999999999985 9999999987653
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.5e-36 Score=328.50 Aligned_cols=299 Identities=16% Similarity=0.157 Sum_probs=213.0
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhc------------c--------chHHHHHHHHHHHHHHhC
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLY------------E--------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll------------~--------P~r~~a~~~a~~va~~~~ 121 (582)
.-.++.|.+.+..+..+++++++|||||||| +++|.+.. . |+|.+|.|+...+.. ++
T Consensus 142 ~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~-l~ 220 (518)
T PLN00206 142 EFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV-LG 220 (518)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH-Hh
Confidence 3456788889999999999999999999999 55664310 1 999999998665443 33
Q ss_pred CccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhC
Q 037717 122 VKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYR 194 (582)
Q Consensus 122 ~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~ 194 (582)
...+..+.....++. ....+.+|+++|||+|++.+..... +.++++||||||| +.++..+.- .+..++...
T Consensus 221 ~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~-~i~~i~~~l 298 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRD-QVMQIFQAL 298 (518)
T ss_pred CCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHH-HHHHHHHhC
Confidence 333322221122221 1234679999999999998876654 9999999999999 333332221 223333444
Q ss_pred CCceEEEecccC--ChHHHHhhhCCCCEEeeCCcee----ceeEEEecCCchhHHHHHHHHHHHHHhc--CCCCCEEEEc
Q 037717 195 PDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRRY----PVELFYTKAPEVDYIEAAIVTALQIHVN--EPTGDILVFL 266 (582)
Q Consensus 195 ~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~----~v~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~g~iLVFl 266 (582)
++.|++++|||+ +.+.++.++...++....+... .+...+......+.. ..+..+... ...+++|||+
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~----~~l~~~l~~~~~~~~~~iVFv 374 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKK----QKLFDILKSKQHFKPPAVVFV 374 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHH----HHHHHHHHhhcccCCCEEEEc
Confidence 678999999999 5677888877666543333211 122222221211111 122222221 2236899999
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 267 TGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 267 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
+++..++.+++.|... .++.+..+||++++++|..+++.|++|..+|||||+++++|||+|+|++||+
T Consensus 375 ~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~---- 442 (518)
T PLN00206 375 SSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII---- 442 (518)
T ss_pred CCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----
Confidence 9999999999988652 3577899999999999999999999999999999999999999999999994
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|| .|.|..+|.||+|||||.|. |.++.+++.++..
T Consensus 443 ----~d----------~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 443 ----FD----------MPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred ----eC----------CCCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 43 25678899999999999995 9999999987643
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.5e-36 Score=321.39 Aligned_cols=297 Identities=16% Similarity=0.163 Sum_probs=208.3
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhh--h------------------ccchHHHHHHHHHHHHHHhCC
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQY--L------------------YEPRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~--l------------------l~P~r~~a~~~a~~va~~~~~ 122 (582)
...+.|.+.+..+.++++++++||||||||. .+|.+ + +-|+|.+|.|+...+.. +..
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~-l~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP-LAQ 108 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH-Hhc
Confidence 3457888899999999999999999999994 33432 1 11999999999765433 333
Q ss_pred ccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCC
Q 037717 123 KLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP 195 (582)
Q Consensus 123 ~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~ 195 (582)
..|..++.....+. ....+.+|+|+||++|++.+..... +.++++||||||| +.++..+.-. ++.+....+
T Consensus 109 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~-i~~i~~~~~ 186 (423)
T PRK04837 109 ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKD-IRWLFRRMP 186 (423)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHH-HHHHHHhCC
Confidence 33444444332221 1234579999999999999876554 8999999999999 3333333222 233333223
Q ss_pred ---CceEEEecccCC--hHHHH-hhhCCCCEEeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEc
Q 037717 196 ---DLKLLISSATLD--AEKFS-DYFGSAPIFKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFL 266 (582)
Q Consensus 196 ---~~kii~~SAT~~--~~~~~-~~f~~~~v~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl 266 (582)
..+.+++|||++ ...+. .++.+...+.+.... ..+...+...... .....+..+......+++||||
T Consensus 187 ~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lVF~ 262 (423)
T PRK04837 187 PANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNE----EKMRLLQTLIEEEWPDRAIIFA 262 (423)
T ss_pred CccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHH----HHHHHHHHHHHhcCCCeEEEEE
Confidence 345789999994 33443 344433333332211 1122222211111 1222333333334467899999
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 267 TGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 267 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
++++.++.+++.|.. .++.+..+||++++++|.++++.|++|+.+|||||+++++|||+|+|++||+.++
T Consensus 263 ~t~~~~~~l~~~L~~---------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~- 332 (423)
T PRK04837 263 NTKHRCEEIWGHLAA---------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL- 332 (423)
T ss_pred CCHHHHHHHHHHHHh---------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC-
Confidence 999999999999976 4678999999999999999999999999999999999999999999999994433
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|.|..+|.||+||+||.|. |.++.++++++..
T Consensus 333 -----------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 333 -----------------PDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred -----------------CCchhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 4567789999999999996 9999999987543
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.1e-36 Score=322.66 Aligned_cols=301 Identities=18% Similarity=0.174 Sum_probs=211.9
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhh-------------------hccchHHHHHHHHHHHHHHh
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQY-------------------LYEPRWVAAMSVAARVSQEM 120 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~-------------------ll~P~r~~a~~~a~~va~~~ 120 (582)
.---.++.|.+++..+.++++++++||||||||. ++|.+ ++-|+|.+|.|+...+....
T Consensus 20 g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~ 99 (456)
T PRK10590 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS 99 (456)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 3334568899999999999999999999999994 44432 11199999999988776543
Q ss_pred CCccCcEEeEEEee---c---ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 121 GVKLGHEVGYSIRF---E---DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 121 ~~~~g~~vgy~v~~---~---~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
. ..+..+...... + .......+|+|+||++|++.+..... ++++++||||||| +.++..+...+.+.+...
T Consensus 100 ~-~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l 177 (456)
T PRK10590 100 K-YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKL 177 (456)
T ss_pred c-cCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhC
Confidence 2 222211111111 0 11234679999999999998876654 8999999999999 444444433322222234
Q ss_pred CCCceEEEecccCC--hHHHHhhhCCCCE-EeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcC
Q 037717 194 RPDLKLLISSATLD--AEKFSDYFGSAPI-FKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLT 267 (582)
Q Consensus 194 ~~~~kii~~SAT~~--~~~~~~~f~~~~v-~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~ 267 (582)
.++.+++++|||+. ...+...+...|. +.+..+. ..+..++....... . ...+..+.......++||||+
T Consensus 178 ~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k---~~~l~~l~~~~~~~~~lVF~~ 253 (456)
T PRK10590 178 PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR-K---RELLSQMIGKGNWQQVLVFTR 253 (456)
T ss_pred CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-H---HHHHHHHHHcCCCCcEEEEcC
Confidence 45678999999993 4566655444443 3332221 11222222212111 1 112223333344578999999
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCccc
Q 037717 268 GQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAK 347 (582)
Q Consensus 268 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k 347 (582)
++.+++.+++.|.. .++.+..+||++++++|.++++.|++|..+|||||+++++|||||+|++||++++
T Consensus 254 t~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~-- 322 (456)
T PRK10590 254 TKHGANHLAEQLNK---------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL-- 322 (456)
T ss_pred cHHHHHHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC--
Confidence 99999999999976 4677899999999999999999999999999999999999999999999994433
Q ss_pred ceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 348 VKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 348 ~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|.+..+|.||+|||||.|. |.|+.+++..+..
T Consensus 323 ----------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 323 ----------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred ----------------CCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 4567789999999999986 9999999876543
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.8e-35 Score=319.20 Aligned_cols=312 Identities=20% Similarity=0.220 Sum_probs=220.1
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhh--hc---------------cchHHHHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQY--LY---------------EPRWVAAMSVA 113 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~--ll---------------~P~r~~a~~~a 113 (582)
.+.+..+...-...+++|.+.+.++.++++++++||||||||.. +|.+ +. -|++.+|.|++
T Consensus 11 ~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~ 90 (434)
T PRK11192 11 SLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVA 90 (434)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHH
Confidence 33444444444556789999999999999999999999999953 3322 21 19999999997
Q ss_pred HHHHHHhCCccCcEEeEEEeec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHH
Q 037717 114 ARVSQEMGVKLGHEVGYSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 114 ~~va~~~~~~~g~~vgy~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
..+... ....+..++.-.... .....+.+|+|+|||+|++.+..... +.++++||||||| +.++..+...+
T Consensus 91 ~~~~~l-~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~ 168 (434)
T PRK11192 91 DQAREL-AKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDI 168 (434)
T ss_pred HHHHHH-HccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHH
Confidence 765443 222333333222111 11235678999999999999887665 8999999999999 44444332222
Q ss_pred HHHHHhhCCCceEEEecccCC---hHHHHhhhCCCCEEe-eCCc---eeceeEEEecCCchhHHHHHHHHHHHHHhcCCC
Q 037717 187 LKDLINYRPDLKLLISSATLD---AEKFSDYFGSAPIFK-IPGR---RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPT 259 (582)
Q Consensus 187 lk~~~~~~~~~kii~~SAT~~---~~~~~~~f~~~~v~~-i~gr---~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 259 (582)
-......+...++++||||++ ...+.+++...|+.. +... ...+...|...... ......+..+......
T Consensus 169 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l~~l~~~~~~ 245 (434)
T PRK11192 169 ETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL---EHKTALLCHLLKQPEV 245 (434)
T ss_pred HHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH---HHHHHHHHHHHhcCCC
Confidence 222223445679999999994 456666665555422 2111 11122222222211 1222233344444456
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeE
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKY 339 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~ 339 (582)
+++||||+++++++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~---------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRK---------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHh---------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 8999999999999999999987 4678999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 340 VIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 340 VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
||++++ |.|...|.||+||+||.|. |.++.+++..++..
T Consensus 317 VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 317 VINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 995432 5677889999999999985 99999998776643
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-35 Score=328.66 Aligned_cols=305 Identities=17% Similarity=0.175 Sum_probs=218.9
Q ss_pred HHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCC
Q 037717 58 QEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 58 ~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~ 122 (582)
.....-...+++|.+++..+.+++++|++||||||||......+++ |+|.+|.|++..+....+.
T Consensus 21 l~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~ 100 (629)
T PRK11634 21 LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKH 100 (629)
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 3334445577889999999999999999999999999554333221 9999999998887665433
Q ss_pred ccCcEEeEEEeec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCC
Q 037717 123 KLGHEVGYSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP 195 (582)
Q Consensus 123 ~~g~~vgy~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~ 195 (582)
..+..+....... ......++|+|+||+.|++.+..... ++++++|||||||+. +...+.-.+...+....+
T Consensus 101 ~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m-l~~gf~~di~~Il~~lp~ 179 (629)
T PRK11634 101 MRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM-LRMGFIEDVETIMAQIPE 179 (629)
T ss_pred cCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH-hhcccHHHHHHHHHhCCC
Confidence 3233332221111 11234689999999999999987665 899999999999953 233332222222223445
Q ss_pred CceEEEecccC--ChHHHHh-hhCCCCEEeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 037717 196 DLKLLISSATL--DAEKFSD-YFGSAPIFKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQ 269 (582)
Q Consensus 196 ~~kii~~SAT~--~~~~~~~-~f~~~~v~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 269 (582)
..++++||||+ ....+.+ |+.+...+.+.... ..+...|......+. ...+..+........+||||+++
T Consensus 180 ~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k----~~~L~~~L~~~~~~~~IVF~~tk 255 (629)
T PRK11634 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRK----NEALVRFLEAEDFDAAIIFVRTK 255 (629)
T ss_pred CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhH----HHHHHHHHHhcCCCCEEEEeccH
Confidence 78999999999 3444554 55444444443321 123333333222222 22233333444557899999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccce
Q 037717 270 DEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVK 349 (582)
Q Consensus 270 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~ 349 (582)
..++.+++.|.. .++.+..+||+|++++|+++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 256 ~~a~~l~~~L~~---------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~------- 319 (629)
T PRK11634 256 NATLEVAEALER---------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN------- 319 (629)
T ss_pred HHHHHHHHHHHh---------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE-------
Confidence 999999999987 4678999999999999999999999999999999999999999999999994
Q ss_pred eecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 350 SYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 350 ~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
|| .|.+..+|.||+||+||.|. |.++.+++..+.
T Consensus 320 -~d----------~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 320 -YD----------IPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred -eC----------CCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 43 24567789999999999996 999999987654
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.6e-35 Score=319.97 Aligned_cols=307 Identities=21% Similarity=0.210 Sum_probs=215.9
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--h------------------ccchHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--L------------------YEPRWVAAM 110 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--l------------------l~P~r~~a~ 110 (582)
...+.+....---.+++|.+++..+.+++++|+++||||||| +++|.+ + +-|+|.+|.
T Consensus 97 ~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~ 176 (475)
T PRK01297 97 ELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVV 176 (475)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHH
Confidence 344444444444578999999999999999999999999999 444432 1 119999999
Q ss_pred HHHHHHHHHhCCccCcEEeEEEeecc-------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhH
Q 037717 111 SVAARVSQEMGVKLGHEVGYSIRFED-------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDN 182 (582)
Q Consensus 111 ~~a~~va~~~~~~~g~~vgy~v~~~~-------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ 182 (582)
++.+.+.... ...|..+.-.....+ ......+|+|+||++|+..+..... ++++++|||||+|. -.+..+
T Consensus 177 Q~~~~~~~l~-~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~ 254 (475)
T PRK01297 177 QIAKDAAALT-KYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR-MLDMGF 254 (475)
T ss_pred HHHHHHHHhh-ccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH-HHhccc
Confidence 9987765432 223333321111111 1234579999999999987765444 89999999999993 222222
Q ss_pred HHHHHHHHHhhC---CCceEEEecccC--ChHHHHhhhCCCCE-EeeCCce---eceeEEEecCCchhHHHHHHHHHHHH
Q 037717 183 LFGLLKDLINYR---PDLKLLISSATL--DAEKFSDYFGSAPI-FKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQI 253 (582)
Q Consensus 183 ll~~lk~~~~~~---~~~kii~~SAT~--~~~~~~~~f~~~~v-~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i 253 (582)
...++.+++.. .+.+++++|||+ +...+++.+...|. +.+.... ..+..++......+. ...+..+
T Consensus 255 -~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~l 329 (475)
T PRK01297 255 -IPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK----YKLLYNL 329 (475)
T ss_pred -HHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH----HHHHHHH
Confidence 22334444332 357999999998 55666665544443 3332221 112222222121111 1223333
Q ss_pred HhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccc
Q 037717 254 HVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLT 333 (582)
Q Consensus 254 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gid 333 (582)
......+++||||+++++++.+++.|.+ .++.+..+||++++++|.++++.|++|.++|||||+++++|||
T Consensus 330 l~~~~~~~~IVF~~s~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 330 VTQNPWERVMVFANRKDEVRRIEERLVK---------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHhcCCCeEEEEeCCHHHHHHHHHHHHH---------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 3344457899999999999999999876 3577889999999999999999999999999999999999999
Q ss_pred cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
||++++||++|+ |.|..+|+||+|||||.|. |.++.++++++
T Consensus 401 i~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 401 IDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred ccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 999999995443 6788899999999999996 99999998764
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.7e-35 Score=329.53 Aligned_cols=316 Identities=16% Similarity=0.129 Sum_probs=223.9
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc----------chHHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE----------PRWVAAMSVAARVS 117 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~----------P~r~~a~~~a~~va 117 (582)
+...+..+.+.--..+++|.+.+..+.+++++++++||||||| +++|.+ +.+ |+|++|.++...+.
T Consensus 23 ~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~ 102 (742)
T TIGR03817 23 PDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVR 102 (742)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHH
Confidence 4455555656666789999999999999999999999999999 455533 211 99999999988876
Q ss_pred HHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcC-----CCCCCCCceEeecccC----CCcchhH
Q 037717 118 QEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIE-----PSLESYSVLIVDEAQE----RTLSTDN 182 (582)
Q Consensus 118 ~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~-----~~l~~~~~vViDE~He----R~~~~d~ 182 (582)
... ..+..++. ..++. ....+.+|+++||++|...++.. ..++++++|||||||. ++.+...
T Consensus 103 ~l~--~~~i~v~~-~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~ 179 (742)
T TIGR03817 103 ELT--LRGVRPAT-YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVAL 179 (742)
T ss_pred Hhc--cCCeEEEE-EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHH
Confidence 543 12222221 11111 12345799999999998655432 1288999999999994 2344455
Q ss_pred HHHHHHHHHhh-CCCceEEEecccC-ChHHHHhhhCCCCEEeeCCc--ee-ceeEEEecCCc------------hhHHHH
Q 037717 183 LFGLLKDLINY-RPDLKLLISSATL-DAEKFSDYFGSAPIFKIPGR--RY-PVELFYTKAPE------------VDYIEA 245 (582)
Q Consensus 183 ll~~lk~~~~~-~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr--~~-~v~~~~~~~~~------------~~~~~~ 245 (582)
++..++++... ..+.|+|++|||+ |+..+++++.+.|+..+... .. .....+...+. ......
T Consensus 180 il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~ 259 (742)
T TIGR03817 180 VLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAE 259 (742)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHH
Confidence 66666666543 3568999999999 88888877666666555332 11 12222221110 001111
Q ss_pred HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeC
Q 037717 246 AIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLAT 325 (582)
Q Consensus 246 ~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT 325 (582)
....+..+.. .+.++||||+|++.++.++..|.+.+...... .+..+..+||++++++|+++++.|++|+.++||||
T Consensus 260 ~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaT 336 (742)
T TIGR03817 260 AADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDGELLGVATT 336 (742)
T ss_pred HHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 2222222222 25789999999999999999988754332211 13567899999999999999999999999999999
Q ss_pred CCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeCh
Q 037717 326 NIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTL 391 (582)
Q Consensus 326 ~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~ 391 (582)
|++|+|||||++++||+.|+ |.|.++|+||+|||||.|. |.++.+.+.
T Consensus 337 d~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 337 NALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred chHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 99999999999999995543 5678899999999999986 999988763
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.1e-35 Score=313.48 Aligned_cols=300 Identities=14% Similarity=0.154 Sum_probs=209.9
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
-..+.|.+++..+.++++++++||||||||......++. |++.+|.|+...+... +...+..++
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~-~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLAL-GDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHH-hhhcCceEE
Confidence 357789999999999999999999999999543322211 9999999987654433 222222222
Q ss_pred EEEeec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 130 YSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 130 y~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
...... .....+.+|+++||+.|.+.+..... +.++++|||||+|.- ....+.-.+...+....++.|++++
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~-~~~~~~~~~~~i~~~~~~~~~~i~~ 207 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM-LSRGFKGQIYDVFKKLPPDVQVALF 207 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH-HhcchHHHHHHHHhhCCCCcEEEEE
Confidence 111111 11234578999999999998876654 899999999999931 1111111112222234578999999
Q ss_pred cccCC--hHHHHhhhCCCCE-EeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Q 037717 203 SATLD--AEKFSDYFGSAPI-FKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAE 276 (582)
Q Consensus 203 SAT~~--~~~~~~~f~~~~v-~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 276 (582)
|||+. ...+...+...|. +.+.... ..+..+|......++... .+..+.......++||||++++.++.++
T Consensus 208 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 208 SATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFD---TLCDLYETLTITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred EecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHH---HHHHHHHhcCCCeEEEEecCcHHHHHHH
Confidence 99993 3344443333332 2232221 122333333332222222 2333333444578999999999999999
Q ss_pred HHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCC
Q 037717 277 EILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTG 356 (582)
Q Consensus 277 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~ 356 (582)
+.|.+ .++.+..+||++++++|+.+++.|++|+.+|||||+++++|||+|++++||+.+
T Consensus 285 ~~l~~---------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~------------ 343 (401)
T PTZ00424 285 KKMHE---------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYD------------ 343 (401)
T ss_pred HHHHH---------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEEC------------
Confidence 99876 357789999999999999999999999999999999999999999999999433
Q ss_pred cccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 357 MESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 357 ~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
.|.|..+|.||+|||||.|. |.|+.++++++...
T Consensus 344 ------~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 344 ------LPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred ------CCCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 35688899999999999985 99999999876543
No 31
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-35 Score=319.77 Aligned_cols=309 Identities=21% Similarity=0.282 Sum_probs=226.4
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hc-------------cchHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LY-------------EPRWVAAMSVAA 114 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll-------------~P~r~~a~~~a~ 114 (582)
...+.+.+....-| .+.|...+..+..++++++.|+|||||| +.+|.+ +. -|+|++|.|++.
T Consensus 39 ~ll~~l~~~gf~~p-t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~ 117 (513)
T COG0513 39 ELLQALKDLGFEEP-TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAE 117 (513)
T ss_pred HHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHH
Confidence 44444544334444 4566677777888899999999999999 555543 22 199999999977
Q ss_pred HHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLL 187 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~l 187 (582)
.+........+..+...+.+.+ ....+.+|+|+|||+|++++..... +.++.++|+|||+ |.+++.+.-.+-
T Consensus 118 ~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~ 196 (513)
T COG0513 118 ELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIE 196 (513)
T ss_pred HHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHH
Confidence 6544322110222222222211 1223589999999999999987754 9999999999999 788887766555
Q ss_pred HHHHhhCCCceEEEecccC--ChHHHHhhhCCCCE-EeeCC-----ceeceeEEEecCCchhHHHHHHHHHHHHHhcCCC
Q 037717 188 KDLINYRPDLKLLISSATL--DAEKFSDYFGSAPI-FKIPG-----RRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPT 259 (582)
Q Consensus 188 k~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v-~~i~g-----r~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 259 (582)
+.+....++.|++++|||+ +...+++-+-..|+ +.+.. ..-.++.+|......+ .....+..+......
T Consensus 197 ~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~ 273 (513)
T COG0513 197 KILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDE 273 (513)
T ss_pred HHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCC
Confidence 5544455689999999999 34445543333443 33331 1234555665554433 334455555555556
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeE
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKY 339 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~ 339 (582)
+++|||++++..++.++..|.. .++.+..+||+|++++|.++++.|++|..+|+||||+|++|||||+|++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~---------~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRK---------RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHH---------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 7899999999999999999987 4789999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChh
Q 037717 340 VIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLH 392 (582)
Q Consensus 340 VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~ 392 (582)
|| .||. |.+...|.||+||+||.|. |.++.++++.
T Consensus 345 Vi--------nyD~----------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 345 VI--------NYDL----------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred eE--------EccC----------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 99 5553 3556679999999999996 9999999974
No 32
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.1e-36 Score=305.66 Aligned_cols=329 Identities=19% Similarity=0.223 Sum_probs=241.4
Q ss_pred ccCCCCCCccccccCCcccccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-----
Q 037717 31 VFDGDNFDEFESELPNKSVVKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE----- 103 (582)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~----- 103 (582)
.+.|...+.+.+.+.+...+..-+.-+......+|-..++ .++....+++++|.+|+|||||| +.+|.++.-
T Consensus 234 s~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR-~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~ 312 (673)
T KOG0333|consen 234 SIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQR-QAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPP 312 (673)
T ss_pred eecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHH-hhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCC
Confidence 4577778888888877776666666667777777766554 45557778888999999999999 455544221
Q ss_pred -----------------chHHHHHHHHHHHHHHhCCccCc----EEeEEEeecc---cCCCCccEEEEChHHHHHHHHcC
Q 037717 104 -----------------PRWVAAMSVAARVSQEMGVKLGH----EVGYSIRFED---CTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 104 -----------------P~r~~a~~~a~~va~~~~~~~g~----~vgy~v~~~~---~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
|+|.+|.++... ...+++.+|. .||.. +++. ..+.++.|+++|||.|++.+.+.
T Consensus 313 ~~~~en~~~gpyaiilaptReLaqqIeeE-t~kf~~~lg~r~vsvigg~-s~EEq~fqls~gceiviatPgrLid~Lenr 390 (673)
T KOG0333|consen 313 MARLENNIEGPYAIILAPTRELAQQIEEE-TNKFGKPLGIRTVSVIGGL-SFEEQGFQLSMGCEIVIATPGRLIDSLENR 390 (673)
T ss_pred cchhhhcccCceeeeechHHHHHHHHHHH-HHHhcccccceEEEEeccc-chhhhhhhhhccceeeecCchHHHHHHHHH
Confidence 899999888432 2233444443 33433 3333 35678999999999999999766
Q ss_pred CC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhC-------------------------CCceEEEecccC--ChHHH
Q 037717 160 PS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-------------------------PDLKLLISSATL--DAEKF 211 (582)
Q Consensus 160 ~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-------------------------~~~kii~~SAT~--~~~~~ 211 (582)
-+ |+++.+||+|||+ |.+++.+--.+.+.+.... .-.+.+++|||+ -++.+
T Consensus 391 ~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verl 469 (673)
T KOG0333|consen 391 YLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERL 469 (673)
T ss_pred HHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHH
Confidence 55 9999999999999 7777777666655543211 015789999999 55667
Q ss_pred Hh-hhCCCCEEeeC--Cceec-eeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccC
Q 037717 212 SD-YFGSAPIFKIP--GRRYP-VELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLG 287 (582)
Q Consensus 212 ~~-~f~~~~v~~i~--gr~~~-v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~ 287 (582)
++ ||..+-++.+. |+..| ++......+.... ...+..+..+....+||||+++++.|+.+++.|..
T Consensus 470 ar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK------ 539 (673)
T KOG0333|consen 470 ARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTKKGADALAKILEK------ 539 (673)
T ss_pred HHHHhhCCeEEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhh------
Confidence 65 67654444443 33333 2222222222222 33344444444567899999999999999999988
Q ss_pred CCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCH
Q 037717 288 TKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISK 367 (582)
Q Consensus 288 ~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~ 367 (582)
.++.++.|||+-++++|+.+++.|++|...|+||||+|++|||||||.+|||+.+. -|.
T Consensus 540 ---~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydma------------------ksi 598 (673)
T KOG0333|consen 540 ---AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMA------------------KSI 598 (673)
T ss_pred ---ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchh------------------hhH
Confidence 57999999999999999999999999999999999999999999999999954443 355
Q ss_pred HhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 368 ASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 368 ~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
..|.||+||+||+|. |++..++|+.+-
T Consensus 599 eDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 599 EDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred HHHHHHhccccccccCceeEEEeccchh
Confidence 679999999999997 999999999873
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-34 Score=320.49 Aligned_cols=297 Identities=18% Similarity=0.214 Sum_probs=209.9
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhh--h------------------ccchHHHHHHHHHHHHHHhC
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQY--L------------------YEPRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~--l------------------l~P~r~~a~~~a~~va~~~~ 121 (582)
--.++.|.+.+..+.++++++++||||||||. ++|.+ + +-|+|.+|.|+...+. .++
T Consensus 30 ~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~-~l~ 108 (572)
T PRK04537 30 TRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV-KFG 108 (572)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH-HHh
Confidence 34567888899999999999999999999993 44432 1 1199999999988754 344
Q ss_pred CccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 122 VKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 122 ~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
...+..++......+ ....+.+|+|+||++|++.+.... .+.++++|||||||. .++..+.. .+..++..
T Consensus 109 ~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~-lld~gf~~-~i~~il~~ 186 (572)
T PRK04537 109 ADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR-MFDLGFIK-DIRFLLRR 186 (572)
T ss_pred ccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH-HhhcchHH-HHHHHHHh
Confidence 444544443322211 123457899999999999887653 388899999999993 22322221 12222222
Q ss_pred ---CCCceEEEecccCCh--HHHH-hhhCCCCEEeeCCcee---ceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEE
Q 037717 194 ---RPDLKLLISSATLDA--EKFS-DYFGSAPIFKIPGRRY---PVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILV 264 (582)
Q Consensus 194 ---~~~~kii~~SAT~~~--~~~~-~~f~~~~v~~i~gr~~---~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLV 264 (582)
+.+.++++||||++. ..+. .++.....+.+..... .+...+..... ......++.+.......++||
T Consensus 187 lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LV 262 (572)
T PRK04537 187 MPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMV 262 (572)
T ss_pred cccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH----HHHHHHHHHHHhcccCCcEEE
Confidence 236799999999943 3333 3444332333322211 12222222221 122333444444455678999
Q ss_pred EcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCC
Q 037717 265 FLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPG 344 (582)
Q Consensus 265 Fl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g 344 (582)
||++++.++.+++.|.+ .++.+..+||+|++.+|+++++.|++|+.+|||||+++++|||+|+|++||+++
T Consensus 263 F~nt~~~ae~l~~~L~~---------~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 263 FVNTKAFVERVARTLER---------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred EeCCHHHHHHHHHHHHH---------cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcC
Confidence 99999999999999977 367899999999999999999999999999999999999999999999999433
Q ss_pred cccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 345 FAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 345 ~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
.|.|..+|.||+||+||.|. |.|+.|++..+.
T Consensus 334 ------------------~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 334 ------------------LPFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred ------------------CCCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 35678899999999999986 999999987543
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-34 Score=309.84 Aligned_cols=294 Identities=18% Similarity=0.213 Sum_probs=206.7
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec-
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE- 135 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~- 135 (582)
..+.|.+++.++.+++++++++||||||| +++|.+... |++.++.+...++.. .+.. +.+.....
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~-~gi~----~~~l~~~~~ 86 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKA-SGIP----ATFLNSSQS 86 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHH-cCCc----EEEEeCCCC
Confidence 56789999999999999999999999999 577866544 999999888777653 3322 22211110
Q ss_pred ---------ccCCCCccEEEEChHHHHHHH--HcCC-CCCCCCceEeecccCC---CcchhHHHHHHHHHHhhCCCceEE
Q 037717 136 ---------DCTSDKTVLKYMTDCMLLREI--VIEP-SLESYSVLIVDEAQER---TLSTDNLFGLLKDLINYRPDLKLL 200 (582)
Q Consensus 136 ---------~~~~~~t~I~~~T~g~Ll~~l--~~~~-~l~~~~~vViDE~HeR---~~~~d~ll~~lk~~~~~~~~~kii 200 (582)
.......+|+|+||+.+.... ...- ...++++|||||||.. +.+..-.+..+..+....|+.+++
T Consensus 87 ~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l 166 (470)
T TIGR00614 87 KEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIM 166 (470)
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceE
Confidence 112345789999999875321 1111 3678999999999943 322222233344445566899999
Q ss_pred EecccCChH---HHHhhhCC-CCEEeeCCceeceeEEEecCCch-hHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHH
Q 037717 201 ISSATLDAE---KFSDYFGS-APIFKIPGRRYPVELFYTKAPEV-DYIEAAIVTALQIHV-NEPTGDILVFLTGQDEIER 274 (582)
Q Consensus 201 ~~SAT~~~~---~~~~~f~~-~~v~~i~gr~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~-~~~~g~iLVFl~~~~~i~~ 274 (582)
++|||++.. .+.++++- .|.+.......| .++|...+.. +... .+..... ..++..+||||+++++++.
T Consensus 167 ~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~----~l~~~l~~~~~~~~~IIF~~s~~~~e~ 241 (470)
T TIGR00614 167 ALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILE----DLLRFIRKEFKGKSGIIYCPSRKKSEQ 241 (470)
T ss_pred EEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHH----HHHHHHHHhcCCCceEEEECcHHHHHH
Confidence 999999553 44555542 233222221111 1122211111 2222 2222222 2334567999999999999
Q ss_pred HHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCC
Q 037717 275 AEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPK 354 (582)
Q Consensus 275 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~ 354 (582)
+++.|.. .++.+..+||+|++++|.++++.|.+|..+|||||+++++|||+|+|++||+.++
T Consensus 242 la~~L~~---------~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~--------- 303 (470)
T TIGR00614 242 VTASLQN---------LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL--------- 303 (470)
T ss_pred HHHHHHh---------cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC---------
Confidence 9999987 4678899999999999999999999999999999999999999999999994443
Q ss_pred CCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 355 TGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 355 ~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
|.|..+|.||+|||||.|. |.|+.+|+..+...
T Consensus 304 ---------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 304 ---------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred ---------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 5577899999999999994 99999999887643
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.6e-34 Score=317.23 Aligned_cols=308 Identities=19% Similarity=0.241 Sum_probs=218.1
Q ss_pred chHHHHHHHhcCCC-ChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhC
Q 037717 52 STLEMLQEERKTLP-IYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 52 ~~~~~~~~~r~~lP-i~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~ 121 (582)
....++.+...... ..+.|.+++.++.+++++++++||||||| +++|.++.. |++.++.+....+.. .+
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~-~g 89 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLA-NG 89 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHH-cC
Confidence 34455565555554 66899999999999999999999999999 478877655 999999887776653 33
Q ss_pred CccCcEEeEEEe----------ecccCCCCccEEEEChHHHHHHHH-cCCCCCCCCceEeecccCC---CcchhHHHHHH
Q 037717 122 VKLGHEVGYSIR----------FEDCTSDKTVLKYMTDCMLLREIV-IEPSLESYSVLIVDEAQER---TLSTDNLFGLL 187 (582)
Q Consensus 122 ~~~g~~vgy~v~----------~~~~~~~~t~I~~~T~g~Ll~~l~-~~~~l~~~~~vViDE~HeR---~~~~d~ll~~l 187 (582)
.. +++... +........+++|+||+.|..... ......++++|||||||.. +.+..-.+..+
T Consensus 90 i~----~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L 165 (607)
T PRK11057 90 VA----AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAAL 165 (607)
T ss_pred Cc----EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHH
Confidence 22 221111 011223457899999999874322 2222567999999999943 22222223344
Q ss_pred HHHHhhCCCceEEEecccCChH---HHHhhhC-CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 188 KDLINYRPDLKLLISSATLDAE---KFSDYFG-SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 188 k~~~~~~~~~kii~~SAT~~~~---~~~~~f~-~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
..+....|+.+++++|||++.. .+.+.++ ..|.+.+.....| .+.|......... ..++.......++++|
T Consensus 166 ~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l~~~l~~~~~~~~I 240 (607)
T PRK11057 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPL----DQLMRYVQEQRGKSGI 240 (607)
T ss_pred HHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchH----HHHHHHHHhcCCCCEE
Confidence 4555566899999999999543 3444443 2344443332222 1222211111111 2233333345568899
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||+++++++.+++.|.+ .++.+.++||+|++++|+++++.|..|..+|||||+++++|||+|+|++||+.
T Consensus 241 IFc~tr~~~e~la~~L~~---------~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 241 IYCNSRAKVEDTAARLQS---------RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred EEECcHHHHHHHHHHHHh---------CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEe
Confidence 999999999999999987 46789999999999999999999999999999999999999999999999954
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
++ |.|..+|.||+|||||.|. |.|+.+|+..++..
T Consensus 312 d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 312 DI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred CC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 43 5678899999999999995 99999999887543
No 36
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-34 Score=286.82 Aligned_cols=324 Identities=19% Similarity=0.219 Sum_probs=232.0
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc----------------chHHHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE----------------PRWVAAMSV 112 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~----------------P~r~~a~~~ 112 (582)
+..+..+...---..+.|...+..+..+++|+|.++|||||| +.+|.+ ++. |+|.+|.|+
T Consensus 16 ~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI 95 (567)
T KOG0345|consen 16 WLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQI 95 (567)
T ss_pred HHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHH
Confidence 333333333233356678888999999999999999999999 455543 211 999999999
Q ss_pred HHHHHHHhCCc-----cCcEEeE-EEeec--ccCCCCccEEEEChHHHHHHHHcCCC---CCCCCceEeecccCCCcchh
Q 037717 113 AARVSQEMGVK-----LGHEVGY-SIRFE--DCTSDKTVLKYMTDCMLLREIVIEPS---LESYSVLIVDEAQERTLSTD 181 (582)
Q Consensus 113 a~~va~~~~~~-----~g~~vgy-~v~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~---l~~~~~vViDE~HeR~~~~d 181 (582)
.+ |++.+-.. ....||- .+.-| .-..++..|+++|||+|++.+..... +.+++++|+|||+ |-+++.
T Consensus 96 ~~-V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmg 173 (567)
T KOG0345|consen 96 RE-VAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMG 173 (567)
T ss_pred HH-HHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhccc
Confidence 54 33332222 1122332 11111 11235778999999999999987443 4599999999999 877777
Q ss_pred HHHHHHHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCEEe-eCCce---ec--eeEEEecCCchhHHHHHHHHHHHH
Q 037717 182 NLFGLLKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPIFK-IPGRR---YP--VELFYTKAPEVDYIEAAIVTALQI 253 (582)
Q Consensus 182 ~ll~~lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~-i~gr~---~~--v~~~~~~~~~~~~~~~~~~~~~~i 253 (582)
+--.+-..+.......|.=++|||. .++.+....-..|+-. +.... -| +..+|...+.. .....++++
T Consensus 174 Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~----eK~~~lv~~ 249 (567)
T KOG0345|consen 174 FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD----EKLSQLVHL 249 (567)
T ss_pred HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH----HHHHHHHHH
Confidence 7555444444445567889999999 5677777655555432 22111 23 56666654432 234455666
Q ss_pred HhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccc
Q 037717 254 HVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLT 333 (582)
Q Consensus 254 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gid 333 (582)
..+...+++|||+||...++.....+.... ....++++||.|.+.+|.++++.|.....-|++|||+|++|||
T Consensus 250 L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 250 LNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 666667899999999999999999988753 5678999999999999999999999988899999999999999
Q ss_pred cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEE--eeChhhhhhhhh---hhhHhhhh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFR--LYTLHNYHRIWM---TILCQKYN 407 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~--L~~~~~~~~~~~---~pei~r~~ 407 (582)
||+|++|| .|||+.. .+++.||+||+||.|. |.++. +-.+.+|.+++. .|++.+.+
T Consensus 323 ip~iD~Vv--------Q~DpP~~----------~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 323 IPGIDLVV--------QFDPPKD----------PSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred CCCceEEE--------ecCCCCC----------hhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 99999999 6776544 4569999999988885 66544 445678888887 37776655
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.5e-33 Score=316.01 Aligned_cols=296 Identities=17% Similarity=0.174 Sum_probs=204.6
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCCccCcEEeEEEee
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRF 134 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~ 134 (582)
--..+.|.+++.++..++++++++|||+||| +|+|.++.. |.+.++.+....+.. .+ ..+.+-...
T Consensus 459 ~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~-~G----I~Aa~L~s~ 533 (1195)
T PLN03137 459 HSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQ-AN----IPAASLSAG 533 (1195)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHh-CC----CeEEEEECC
Confidence 3578889999999999999999999999999 688876655 999998754333332 22 222221110
Q ss_pred ---c-------cc--CCCCccEEEEChHHHHH------HHHcCCCCCCCCceEeecccC---CCcchhHHHHHHHHHHhh
Q 037717 135 ---E-------DC--TSDKTVLKYMTDCMLLR------EIVIEPSLESYSVLIVDEAQE---RTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 135 ---~-------~~--~~~~t~I~~~T~g~Ll~------~l~~~~~l~~~~~vViDE~He---R~~~~d~ll~~lk~~~~~ 193 (582)
. .. .....+|+|+||++|.. .+..-.....+++|||||||. .|.+..--...+..+...
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~ 613 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK 613 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh
Confidence 0 00 11467999999998752 221111245589999999993 332211112223333445
Q ss_pred CCCceEEEecccCCh---HHHHhhhCCCC-EEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHh-cCCCCCEEEEcCC
Q 037717 194 RPDLKLLISSATLDA---EKFSDYFGSAP-IFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHV-NEPTGDILVFLTG 268 (582)
Q Consensus 194 ~~~~kii~~SAT~~~---~~~~~~f~~~~-v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~g~iLVFl~~ 268 (582)
.|+.+++++|||+.. +.+.+.++-.. ++...+...| .++|...+..... ...+..... ....+..||||.+
T Consensus 614 fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~k~kk~---le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 614 FPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVPKTKKC---LEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEeccchhH---HHHHHHHHHhcccCCCceeEeCc
Confidence 678899999999944 34556665332 2222222112 2334332222111 112222222 2235678999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccc
Q 037717 269 QDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKV 348 (582)
Q Consensus 269 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~ 348 (582)
+++++.+++.|.. .++.+.++||+|++++|..+++.|..|..+|||||+++++|||+|+|++||+.++
T Consensus 690 Rke~E~LAe~L~~---------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl--- 757 (1195)
T PLN03137 690 RMDCEKVAERLQE---------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL--- 757 (1195)
T ss_pred hhHHHHHHHHHHH---------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC---
Confidence 9999999999987 4678999999999999999999999999999999999999999999999995443
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 349 KSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 349 ~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
|.|..+|.||+|||||.| +|.|+.+|+..++.
T Consensus 758 ---------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 758 ---------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ---------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 456778999999999999 49999999987764
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.9e-33 Score=320.10 Aligned_cols=308 Identities=19% Similarity=0.157 Sum_probs=210.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc---------------------cchHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY---------------------EPRWVAAMSV 112 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll---------------------~P~r~~a~~~ 112 (582)
..+..+.+.. -.++.|.+++..+.++++++++||||||||......++ -|+|.+|.++
T Consensus 22 v~~~~~~~~~-~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di 100 (876)
T PRK13767 22 VREWFKEKFG-TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDI 100 (876)
T ss_pred HHHHHHHccC-CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHH
Confidence 3444444322 26778999999999999999999999999954332211 1999999998
Q ss_pred HHHHHH----------HhCCcc-CcEEeEEEeeccc-------CCCCccEEEEChHHHHHHHHcCC---CCCCCCceEee
Q 037717 113 AARVSQ----------EMGVKL-GHEVGYSIRFEDC-------TSDKTVLKYMTDCMLLREIVIEP---SLESYSVLIVD 171 (582)
Q Consensus 113 a~~va~----------~~~~~~-g~~vgy~v~~~~~-------~~~~t~I~~~T~g~Ll~~l~~~~---~l~~~~~vViD 171 (582)
..++.+ ..|..+ +..++... ++.. .....+|+++||+.|...+.+.. .+.++++||||
T Consensus 101 ~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~-Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVID 179 (876)
T PRK13767 101 HRNLEEPLTEIREIAKERGEELPEIRVAIRT-GDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVD 179 (876)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCeeEEEEc-CCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEe
Confidence 775432 223333 22222211 1111 12356899999999976664332 37899999999
Q ss_pred ccc-----CCCcchhHHHHHHHHHHhhCCCceEEEecccC-ChHHHHhhhCCC-------CEEeeCCc---eeceeEEEe
Q 037717 172 EAQ-----ERTLSTDNLFGLLKDLINYRPDLKLLISSATL-DAEKFSDYFGSA-------PIFKIPGR---RYPVELFYT 235 (582)
Q Consensus 172 E~H-----eR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~~~~~~f~~~-------~v~~i~gr---~~~v~~~~~ 235 (582)
|+| .|+......+..++.+. .++.++|++|||+ +.+.+++|+++. ++..+.+. .+++.+...
T Consensus 180 E~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p 257 (876)
T PRK13767 180 EIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISP 257 (876)
T ss_pred chhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEecc
Confidence 999 46666666777776654 3578999999999 889999998642 22223222 122222111
Q ss_pred c-----CCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHh
Q 037717 236 K-----APEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKI 310 (582)
Q Consensus 236 ~-----~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 310 (582)
. .+...........+.... ...+++||||+|++.++.++..|.+.... ...+..+..+||+|++++|..+
T Consensus 258 ~~~l~~~~~~~~~~~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~---~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 258 VDDLIHTPAEEISEALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPE---EYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred CccccccccchhHHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchh---hccccceeeeeCCCCHHHHHHH
Confidence 0 001111111122222222 23578999999999999999999874321 1123568899999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC----CCeEE
Q 037717 311 FEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG----PGKCF 386 (582)
Q Consensus 311 ~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~----~G~~~ 386 (582)
++.|++|..+|||||+++|+|||+|++++||.. ..|.|.++|.||+|||||.+ .|.++
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~------------------~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL------------------GSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe------------------CCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 999999999999999999999999999999933 23567889999999999863 26666
Q ss_pred Ee
Q 037717 387 RL 388 (582)
Q Consensus 387 ~L 388 (582)
..
T Consensus 395 ~~ 396 (876)
T PRK13767 395 VV 396 (876)
T ss_pred Ec
Confidence 54
No 39
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=284.72 Aligned_cols=299 Identities=19% Similarity=0.229 Sum_probs=223.7
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc---------------chHHHHHHHHHHHHHHhCCcc
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE---------------PRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~---------------P~r~~a~~~a~~va~~~~~~~ 124 (582)
.-+.+.|+..+.-+..++++++.|.|||||| +++|.+ ++. |+|++|+|++......+....
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 3466778888888899999999999999999 667754 222 999999999887766665555
Q ss_pred CcEEeEEEeecccC------CCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCC
Q 037717 125 GHEVGYSIRFEDCT------SDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPD 196 (582)
Q Consensus 125 g~~vgy~v~~~~~~------~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~ 196 (582)
+..||+.+.+.+.. ...++|+|+|||+|++++.+.+. ..+..++|+|||+ |-++..+--.+.+.+-.....
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~ 261 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQ 261 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhcccc
Confidence 66777777665432 34789999999999999998766 6778999999999 666665554444443334467
Q ss_pred ceEEEecccC--ChHHHHhh-hCCCCEEe--eCCcee----ceeEEEecCCchhHHHHHHHHHHHHHhcCC-CCCEEEEc
Q 037717 197 LKLLISSATL--DAEKFSDY-FGSAPIFK--IPGRRY----PVELFYTKAPEVDYIEAAIVTALQIHVNEP-TGDILVFL 266 (582)
Q Consensus 197 ~kii~~SAT~--~~~~~~~~-f~~~~v~~--i~gr~~----~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~iLVFl 266 (582)
.|.+++|||. .++.++.- +...|++. +++... -++.-|.-.+....+. .++.....+. ...|+|||
T Consensus 262 rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~----ll~~~LKk~~~~~KiiVF~ 337 (543)
T KOG0342|consen 262 RQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS----LLYTFLKKNIKRYKIIVFF 337 (543)
T ss_pred ceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH----HHHHHHHHhcCCceEEEEe
Confidence 8999999999 45666653 23334332 122211 1333344444333322 2222222222 27899999
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 267 TGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 267 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
+|...+..+++.|.. -.+.+.-+||+.++..|..++..|.+.+.-|+||||++++|+|+|+|+.||
T Consensus 338 sT~~~vk~~~~lL~~---------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv----- 403 (543)
T KOG0342|consen 338 STCMSVKFHAELLNY---------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV----- 403 (543)
T ss_pred chhhHHHHHHHHHhh---------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE-----
Confidence 999999999999985 467899999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
.|| .|-.+.+|+||.||+||.|. |..+.+..+++.
T Consensus 404 ---Q~~----------~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 404 ---QYD----------PPSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred ---EeC----------CCCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 444 34567789999999999986 999998887754
No 40
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=277.16 Aligned_cols=314 Identities=18% Similarity=0.200 Sum_probs=239.0
Q ss_pred ccchHHHHHHHh--cCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------------------chH
Q 037717 50 VKSTLEMLQEER--KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------------------PRW 106 (582)
Q Consensus 50 ~~~~~~~~~~~r--~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------------------P~r 106 (582)
...-+.++.+.- ++.||. .++...+.++++++.+|.||+||| +++|-+++- |+|
T Consensus 228 ~pevmenIkK~GFqKPtPIq---SQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 228 YPEVMENIKKTGFQKPTPIQ---SQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred hHHHHHHHHhccCCCCCcch---hcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 335556666554 445554 345556788999999999999999 566665442 999
Q ss_pred HHHHHHHHHHHHHhCCccCcEEeEEE--eec--ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchh
Q 037717 107 VAAMSVAARVSQEMGVKLGHEVGYSI--RFE--DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTD 181 (582)
Q Consensus 107 ~~a~~~a~~va~~~~~~~g~~vgy~v--~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d 181 (582)
.+|.++-..+..+.-......+-|+. |.+ .....+..|+++|||.|.+....+.. |.++.++|+|||+ |.+++.
T Consensus 305 eLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMg 383 (629)
T KOG0336|consen 305 ELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMG 383 (629)
T ss_pred HHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhccc
Confidence 99999977776664333322333322 211 12346789999999999998877665 9999999999999 999999
Q ss_pred HHHHHHHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCEEeeCCc-----eeceeEEEecCCchhHHHHHHHHHHHHH
Q 037717 182 NLFGLLKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPIFKIPGR-----RYPVELFYTKAPEVDYIEAAIVTALQIH 254 (582)
Q Consensus 182 ~ll~~lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr-----~~~v~~~~~~~~~~~~~~~~~~~~~~i~ 254 (582)
+-..+.|.++..||+.++++.|||+ .+..++.-+-..|++...|. ...|+..+....+.+.+. .+...+.-
T Consensus 384 FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~-~~~~f~~~- 461 (629)
T KOG0336|consen 384 FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLE-IVQFFVAN- 461 (629)
T ss_pred ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHH-HHHHHHHh-
Confidence 9999999999999999999999999 56777775556777777665 345666665545444442 22222222
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCcccccc
Q 037717 255 VNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTI 334 (582)
Q Consensus 255 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidI 334 (582)
..+..++||||..+.-++.+...|.- .++..-.+||+-.+.+|+..++.|++|..+|+|||++|.+|+|+
T Consensus 462 -ms~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv 531 (629)
T KOG0336|consen 462 -MSSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV 531 (629)
T ss_pred -cCCCceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc
Confidence 23457899999998887777665543 57888999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhhh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHRI 397 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~~ 397 (582)
|||++|+| ||-+ -...+|+||.||+||+|. |..+.+++..+....
T Consensus 532 ~DiTHV~N--------yDFP----------~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a 577 (629)
T KOG0336|consen 532 PDITHVYN--------YDFP----------RNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMA 577 (629)
T ss_pred hhcceeec--------cCCC----------ccHHHHHHHhcccccCCCCcceEEEEehhhHHHH
Confidence 99999994 5433 345579999999999996 999999999887543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.6e-32 Score=304.92 Aligned_cols=293 Identities=20% Similarity=0.210 Sum_probs=209.1
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCCccCcEEeEEEe---
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR--- 133 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~--- 133 (582)
..+.|.+++.++.+++++++++||||||| +++|..+.. |++.+..+...++.. +|. .+.+...
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~-~gi----~~~~~~s~~~ 88 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRA-AGV----AAAYLNSTLS 88 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHH-cCC----cEEEEeCCCC
Confidence 57789999999999999999999999999 577766544 999998887776654 332 2332111
Q ss_pred ec-------ccCCCCccEEEEChHHHHHHHHcC-CCCCCCCceEeecccC---CCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 134 FE-------DCTSDKTVLKYMTDCMLLREIVIE-PSLESYSVLIVDEAQE---RTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 134 ~~-------~~~~~~t~I~~~T~g~Ll~~l~~~-~~l~~~~~vViDE~He---R~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
.+ .......+|+|+||+.|....... -...++++|||||||. +|.+....+..+..+....|+.+++++
T Consensus 89 ~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~l 168 (591)
T TIGR01389 89 AKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIAL 168 (591)
T ss_pred HHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEE
Confidence 01 012345789999999986533222 2367899999999994 344333344445555556677789999
Q ss_pred cccCChH---HHHhhhCC-CCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHH
Q 037717 203 SATLDAE---KFSDYFGS-APIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEI 278 (582)
Q Consensus 203 SAT~~~~---~~~~~f~~-~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 278 (582)
|||.+.. .+.++++- .+...+.+... ..++|......+.. ..+........+++.||||+++++++.+++.
T Consensus 169 TAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-~nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~ 243 (591)
T TIGR01389 169 TATADAETRQDIRELLRLADANEFITSFDR-PNLRFSVVKKNNKQ----KFLLDYLKKHRGQSGIIYASSRKKVEELAER 243 (591)
T ss_pred EeCCCHHHHHHHHHHcCCCCCCeEecCCCC-CCcEEEEEeCCCHH----HHHHHHHHhcCCCCEEEEECcHHHHHHHHHH
Confidence 9999543 45566642 22222222111 12222221111111 1222222333367899999999999999999
Q ss_pred HHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcc
Q 037717 279 LKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGME 358 (582)
Q Consensus 279 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~ 358 (582)
|.. .++.+.++||+|++++|+.+++.|..|..+|||||+++++|||+|+|++||+.+.
T Consensus 244 L~~---------~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~------------- 301 (591)
T TIGR01389 244 LES---------QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM------------- 301 (591)
T ss_pred HHh---------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC-------------
Confidence 976 4677899999999999999999999999999999999999999999999995443
Q ss_pred cccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 359 SLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 359 ~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
|.|..+|.||+|||||.| +|.|+.+|+..+..
T Consensus 302 -----p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 302 -----PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred -----CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 557778999999999998 59999999987754
No 42
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=285.60 Aligned_cols=301 Identities=18% Similarity=0.216 Sum_probs=229.0
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc---------------chHHHHHHHHHH---HHHHhCCccC
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE---------------PRWVAAMSVAAR---VSQEMGVKLG 125 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~---------------P~r~~a~~~a~~---va~~~~~~~g 125 (582)
..|.+.|.....+++++..|.|||||| +++|.+ |+. |+|.+|.|+..- |....+...|
T Consensus 94 eiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaG 173 (758)
T KOG0343|consen 94 EIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAG 173 (758)
T ss_pred HHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccc
Confidence 345555555566777899999999999 556643 222 999999999654 4444444555
Q ss_pred cEEeE-EEeecccCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 126 HEVGY-SIRFEDCTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 126 ~~vgy-~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
..+|. .+.++...-.+.+|++||||+||++|...+. -+++.++|+|||+ |.+++.+--.+-..+-...+..|.+++
T Consensus 174 LiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQTLLF 252 (758)
T KOG0343|consen 174 LIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQTLLF 252 (758)
T ss_pred eeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhheeeee
Confidence 55542 2344444446789999999999999998887 4688999999999 888887754443333445667899999
Q ss_pred cccC--ChHHHHhhhCCCCEEe-eC-----CceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 037717 203 SATL--DAEKFSDYFGSAPIFK-IP-----GRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIER 274 (582)
Q Consensus 203 SAT~--~~~~~~~~f~~~~v~~-i~-----gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 274 (582)
|||. .+..+++.--..|++. +- +.+-.+..+|...+..+ .+..++....+.....+|||++|.+++..
T Consensus 253 SATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~----Ki~~L~sFI~shlk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 253 SATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED----KIDMLWSFIKSHLKKKSIVFLSSCKQVKF 328 (758)
T ss_pred ecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh----HHHHHHHHHHhccccceEEEEehhhHHHH
Confidence 9999 8889998755555432 21 12223444555544433 34445555566677899999999999999
Q ss_pred HHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCC
Q 037717 275 AEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPK 354 (582)
Q Consensus 275 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~ 354 (582)
+++.+.+.- +++.+..+||.|++..|-.++..|-+.+--|++||+++++|+|+|.|++||
T Consensus 329 ~~e~F~rlr-------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi------------- 388 (758)
T KOG0343|consen 329 LYEAFCRLR-------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI------------- 388 (758)
T ss_pred HHHHHHhcC-------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE-------------
Confidence 999988743 688999999999999999999999888889999999999999999999999
Q ss_pred CCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhhhh
Q 037717 355 TGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHRIW 398 (582)
Q Consensus 355 ~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~~~ 398 (582)
...+|....+|+||+||+.|... |.|+.+.++.+-+.++
T Consensus 389 -----Q~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l 428 (758)
T KOG0343|consen 389 -----QVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAML 428 (758)
T ss_pred -----EecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHH
Confidence 55678888999999999999986 9999999887754443
No 43
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=291.53 Aligned_cols=452 Identities=19% Similarity=0.200 Sum_probs=304.6
Q ss_pred HHHHH-HHHhCCCeEEEECCCCCchhchHhhhhcc----------------------chHHHHHHHHHHHHHHhCCccCc
Q 037717 70 WEELL-QAVSGYPVLAIVGETGSGKTTQIPQYLYE----------------------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 70 ~~~il-~~i~~~~~viv~a~TGSGKTt~ip~~ll~----------------------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
|.++. .+.+.+.+.+||||||||||-.+...++. |.+++|..++..+.+.++ .+|.
T Consensus 115 QS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi 193 (1230)
T KOG0952|consen 115 QSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGI 193 (1230)
T ss_pred HHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccc
Confidence 44443 45678899999999999999666555543 999999999888887764 3455
Q ss_pred EEeEEEeecccC----CCCccEEEEChHHH---HHHHHcCC-CCCCCCceEeeccc----CCCcchhHHHHHHHHHHh-h
Q 037717 127 EVGYSIRFEDCT----SDKTVLKYMTDCML---LREIVIEP-SLESYSVLIVDEAQ----ERTLSTDNLFGLLKDLIN-Y 193 (582)
Q Consensus 127 ~vgy~v~~~~~~----~~~t~I~~~T~g~L---l~~l~~~~-~l~~~~~vViDE~H----eR~~~~d~ll~~lk~~~~-~ 193 (582)
.|+-- .+|... -..|+|+++||+-. -|....+. ..+.+.+|||||+| +||+..+.++++..+... .
T Consensus 194 ~v~EL-TGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 194 SVREL-TGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred eEEEe-cCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 54421 223222 24789999999754 33333332 27889999999999 999999999998876654 4
Q ss_pred CCCceEEEecccC-ChHHHHhhhCCC---CEEeeCCceec--eeEEEecCCch--hH----H-HHHHHHHHHHHhcCCCC
Q 037717 194 RPDLKLLISSATL-DAEKFSDYFGSA---PIFKIPGRRYP--VELFYTKAPEV--DY----I-EAAIVTALQIHVNEPTG 260 (582)
Q Consensus 194 ~~~~kii~~SAT~-~~~~~~~~f~~~---~v~~i~gr~~~--v~~~~~~~~~~--~~----~-~~~~~~~~~i~~~~~~g 260 (582)
...+|+|++|||+ |.+++++|++.. .++...++..| .+..+...+.. +. + +.....+...+ ..+.
T Consensus 273 qs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~ 350 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGH 350 (1230)
T ss_pred hhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCC
Confidence 4579999999999 999999999864 46666665444 44444433222 11 1 11122233333 3468
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhhhccCCCC-----C--C-------eEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC
Q 037717 261 DILVFLTGQDEIERAEEILKQRTRGLGTKI-----A--E-------LIICPIYANLPTELQAKIFEPTPERARKVVLATN 326 (582)
Q Consensus 261 ~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~-----~--~-------~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ 326 (582)
+++|||+++++....|+.|.+.....+... + + .-+...|+||..++|..+++.|..|.++|++||.
T Consensus 351 qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTa 430 (1230)
T KOG0952|consen 351 QVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTA 430 (1230)
T ss_pred eEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecc
Confidence 999999999999999999987654433211 0 1 2345569999999999999999999999999999
Q ss_pred CCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChh---hhhhhhh-
Q 037717 327 IAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLH---NYHRIWM- 399 (582)
Q Consensus 327 iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~---~~~~~~~- 399 (582)
++++|+|+|+--++| ..+..||+..|.- .-.+.....|..|||||++ .|..+.+-+.+ .|.+++.
T Consensus 431 TLAwGVNLPA~aViI----KGT~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 431 TLAWGVNLPAYAVII----KGTQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred eeeeccCCcceEEEe----cCCcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcC
Confidence 999999999888888 7788999987622 2356678999999999998 48877777755 4555544
Q ss_pred --hhhHhhhhHHHHHHHH---hc-CC--------------------ccccc----cCC-CCch-----HHHHHHHHHHHH
Q 037717 400 --TILCQKYNELIWKMLS---LF-SN--------------------VLVNF----DFI-DPPL-----EEALLKAFELLY 443 (582)
Q Consensus 400 --~pei~r~~~~~L~l~~---l~-~~--------------------~~~~f----~~~-~~p~-----~~~i~~al~~L~ 443 (582)
+.|-+-.+.++=.+.+ +| +. ++..+ ..+ ..|. .+.+..++..|.
T Consensus 503 ~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~ 582 (1230)
T KOG0952|consen 503 QNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELD 582 (1230)
T ss_pred CChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhh
Confidence 1332222222111111 11 11 11110 111 1221 233455666666
Q ss_pred HcCCC--cCC-C--ccchhchhhhcCCCChHHHHHHHhccc-ccChHHHHHHHHhhccCCCccccChhhHHHHHH-----
Q 037717 444 ALGAL--NKA-G--QLTRVGRQMAEFPIDPKLSKTIVSLDK-YKCSDEIITIAAMLFVGNSIFYRPKDKQIYADN----- 512 (582)
Q Consensus 444 ~lgal--~~~-~--~lT~lG~~~a~lpl~p~~~k~l~~~~~-~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~----- 512 (582)
....+ |.+ | ..|++||.|+.+++..+..+.++.... +--.+++|.++++-+...-+-++..+++...+.
T Consensus 583 ~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~ 662 (1230)
T KOG0952|consen 583 KVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSC 662 (1230)
T ss_pred hhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccc
Confidence 55444 332 2 689999999999999999999999998 788999999999987754444444333322111
Q ss_pred HhhhccCCCCCcHHHHHHHHHH
Q 037717 513 ARMNFHLGDVGDRIALLRVYNC 534 (582)
Q Consensus 513 ~~~~f~~~~~sD~~~~l~~~~~ 534 (582)
.+..|.. ..++--.++.+|..
T Consensus 663 ~~~~~~~-~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 663 EKYPFGG-EKGKVNILLQAYIS 683 (1230)
T ss_pred ccccccc-cchhHHHHHHhhhh
Confidence 1122333 35777777777754
No 44
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-33 Score=288.01 Aligned_cols=294 Identities=20% Similarity=0.192 Sum_probs=210.8
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc---------------------chHHHHHHHHHHHHHHhCCc
Q 037717 69 FWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE---------------------PRWVAAMSVAARVSQEMGVK 123 (582)
Q Consensus 69 ~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~---------------------P~r~~a~~~a~~va~~~~~~ 123 (582)
.|+--+..+.+++.++++|+|||||| +++|.. +++ |+|.+|.|+..+..+-.+..
T Consensus 100 vQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s 179 (482)
T KOG0335|consen 100 VQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS 179 (482)
T ss_pred ceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc
Confidence 34445677899999999999999999 666654 222 99999999987766544322
Q ss_pred c-CcEEeEEEe----ecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcc-hhHHHHHHHHHHhh---
Q 037717 124 L-GHEVGYSIR----FEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLS-TDNLFGLLKDLINY--- 193 (582)
Q Consensus 124 ~-g~~vgy~v~----~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~-~d~ll~~lk~~~~~--- 193 (582)
. -..++|.-+ .......+++|+++|||.|.+.+..... |.++.++|||||+ |.++ +.+.-.+-+.+...
T Consensus 180 ~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~ 258 (482)
T KOG0335|consen 180 GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMP 258 (482)
T ss_pred cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccCCC
Confidence 1 112233221 1123456899999999999999987766 9999999999999 7776 55544333332221
Q ss_pred -CCCceEEEecccC--ChHHHHhhhCCC-CEEeeCCc----eeceeEEEecCCchhHHHHHHHHHHHHHhcC-CCC----
Q 037717 194 -RPDLKLLISSATL--DAEKFSDYFGSA-PIFKIPGR----RYPVELFYTKAPEVDYIEAAIVTALQIHVNE-PTG---- 260 (582)
Q Consensus 194 -~~~~kii~~SAT~--~~~~~~~~f~~~-~v~~i~gr----~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g---- 260 (582)
....+.+++|||. +.+.++.+|-.. .++.--++ .-.+........+.+. ...+..++...... ..+
T Consensus 259 ~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~k-r~~Lldll~~~~~~~~~~~~~~ 337 (482)
T KOG0335|consen 259 PKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEK-RSKLLDLLNKDDGPPSDGEPKW 337 (482)
T ss_pred CccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhh-HHHHHHHhhcccCCcccCCccc
Confidence 1367899999999 677777777543 44333332 2223222222222222 22222233222111 223
Q ss_pred -CEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeE
Q 037717 261 -DILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKY 339 (582)
Q Consensus 261 -~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~ 339 (582)
.++||+.+++.+..++..|.. .++...++||..++.+|.+.++.|+.|+..|+|||||+++|+|||+|++
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~---------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~h 408 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSS---------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKH 408 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhc---------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCce
Confidence 799999999999999999987 6888999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeCh
Q 037717 340 VIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTL 391 (582)
Q Consensus 340 VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~ 391 (582)
|| .||-+. .-.+|+||+||+||.|. |....|+..
T Consensus 409 VI--------nyDmP~----------d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 409 VI--------NYDMPA----------DIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred eE--------EeecCc----------chhhHHHhccccccCCCCceeEEEecc
Confidence 99 455333 34479999999999997 999999984
No 45
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-32 Score=264.66 Aligned_cols=313 Identities=21% Similarity=0.269 Sum_probs=224.3
Q ss_pred ccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHH
Q 037717 50 VKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAA 114 (582)
Q Consensus 50 ~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~ 114 (582)
..+++-+-.+.-.----.+.|...+.+|.++++++-+|.||||||+.+...+++ |+|.+|.++++
T Consensus 14 l~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaE 93 (442)
T KOG0340|consen 14 LSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAE 93 (442)
T ss_pred ccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHH
Confidence 334444444443333334457889999999999999999999999777666655 99999999999
Q ss_pred HHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-----CCCCCceEeecccCCCcchhHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-----LESYSVLIVDEAQERTLSTDNL 183 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-----l~~~~~vViDE~HeR~~~~d~l 183 (582)
++.. +|...+..+..-+.+.+ ..+++.+++++|||+|-..+.+++. +.++.++|+|||+ |-+..++-
T Consensus 94 QF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~ 171 (442)
T KOG0340|consen 94 QFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFP 171 (442)
T ss_pred HHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchh
Confidence 8865 45555554444344433 3467899999999999999987732 8899999999999 66665442
Q ss_pred HHHHHHHHhhCC-CceEEEecccCChHHHHhhhCCCCEEe-----e---CCceec--eeEEEecCCchhHHHHHHHHHHH
Q 037717 184 FGLLKDLINYRP-DLKLLISSATLDAEKFSDYFGSAPIFK-----I---PGRRYP--VELFYTKAPEVDYIEAAIVTALQ 252 (582)
Q Consensus 184 l~~lk~~~~~~~-~~kii~~SAT~~~~~~~~~f~~~~v~~-----i---~gr~~~--v~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
..|+.+...-| ..+.+++|||+ .+.+.+.|+ +|+-. . +|-..+ +...|...+. +..+..+..++.
T Consensus 172 -d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~~Lr 247 (442)
T KOG0340|consen 172 -DILEGIEECLPKPRQTLLFSATI-TDTIKQLFG-CPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVHLLR 247 (442)
T ss_pred -hHHhhhhccCCCccceEEEEeeh-hhHHHHhhc-CCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHHHHh
Confidence 22333333334 35899999999 222333332 22211 0 111100 1111222121 122333344455
Q ss_pred HHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCcccc
Q 037717 253 IHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSL 332 (582)
Q Consensus 253 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gi 332 (582)
...+++.++++||+++..+++.++..|.. -++.+..+||.|++.+|-..+.+|+++..+|++||++|.+|+
T Consensus 248 ~~~~~~~~simIFvnttr~cQ~l~~~l~~---------le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 248 DFENKENGSIMIFVNTTRECQLLSMTLKN---------LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred hhhhccCceEEEEeehhHHHHHHHHHHhh---------hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 55555679999999999999999999987 489999999999999999999999999999999999999999
Q ss_pred ccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 333 TIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 333 dIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|||.|..|||..+ |-....|+||.||+.|.|. |..+.++++.+.+
T Consensus 319 DIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 319 DIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred CCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 9999999995444 4455689999999999997 9999999976553
No 46
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=4.4e-31 Score=251.59 Aligned_cols=313 Identities=14% Similarity=0.196 Sum_probs=221.0
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc---------------cchHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY---------------EPRWVAAMSVAARV 116 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll---------------~P~r~~a~~~a~~v 116 (582)
.-+..+-.+-..-|-..+ +.++..|..++++|+.+..|+|||..+..-++ .|+|.+|.|+.+-+
T Consensus 37 dlLrgiY~yGfekPS~IQ-qrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi 115 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQ-QRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVI 115 (400)
T ss_pred HHHHHHHHhccCCchHHH-hhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHH
Confidence 445556666666775544 45556677888899999999999943322222 29999999997654
Q ss_pred HHHhCCccCcEE----eE-EEeec-ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 117 SQEMGVKLGHEV----GY-SIRFE-DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 117 a~~~~~~~g~~v----gy-~v~~~-~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
.. +|...+..+ |- .+..+ .+..-+.+++.+|||+.++++....+ -..+..+|+||++|.- +-.+--.....
T Consensus 116 ~a-lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL-~kgfk~Qiydi 193 (400)
T KOG0328|consen 116 LA-LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML-NKGFKEQIYDI 193 (400)
T ss_pred HH-hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH-HhhHHHHHHHH
Confidence 43 332222211 11 11111 12334678999999999999987766 7889999999998421 11111111111
Q ss_pred HHhhCCCceEEEecccC--ChHHHHhhhCCCCEEeeCCc-eec---eeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 190 LINYRPDLKLLISSATL--DAEKFSDYFGSAPIFKIPGR-RYP---VELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 190 ~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr-~~~---v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
.....|+.|++++|||+ +.-+..+.|-..|+-....| ..+ ++.+|......+ ....++..++.+-.-.+.+
T Consensus 194 yr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee---wKfdtLcdLYd~LtItQav 270 (400)
T KOG0328|consen 194 YRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE---WKFDTLCDLYDTLTITQAV 270 (400)
T ss_pred HHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhh---hhHhHHHHHhhhhehheEE
Confidence 12245799999999999 45556667766666443332 111 344554433222 2334455555444457899
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||+|++.++.+.+.+++ ..+.+..+||+|+++||+++.+.|++|+-+|+++|++-++|+|+|.|..||
T Consensus 271 IFcnTk~kVdwLtekm~~---------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi-- 339 (400)
T KOG0328|consen 271 IFCNTKRKVDWLTEKMRE---------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI-- 339 (400)
T ss_pred EEecccchhhHHHHHHHh---------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE--
Confidence 999999999999999988 578999999999999999999999999999999999999999999999999
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHRI 397 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~~ 397 (582)
.||- |..+..|.||+||.||.|. |.++.+...++...+
T Consensus 340 ------NYDL----------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~l 378 (400)
T KOG0328|consen 340 ------NYDL----------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRIL 378 (400)
T ss_pred ------ecCC----------CccHHHHhhhhccccccCCcceEEEEecHHHHHHH
Confidence 4553 4445679999999999996 999999988876543
No 47
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5e-31 Score=270.20 Aligned_cols=316 Identities=19% Similarity=0.214 Sum_probs=221.9
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc-----------------chHHHHHHHHHHHHHHhCCcc
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE-----------------PRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~-----------------P~r~~a~~~a~~va~~~~~~~ 124 (582)
....|.+.|..+.++++++|-++|||||| +++|.. |.. |+|++|.|+..-+.+.....-
T Consensus 160 pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred cchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCce
Confidence 44556677777888999999999999999 667754 211 999999999887777655321
Q ss_pred CcEEeEEEeecccCCC------CccEEEEChHHHHHHHHcCCC--CCCCCceEeeccc---CCCcchhH--HHHHHHHH-
Q 037717 125 GHEVGYSIRFEDCTSD------KTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQ---ERTLSTDN--LFGLLKDL- 190 (582)
Q Consensus 125 g~~vgy~v~~~~~~~~------~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~H---eR~~~~d~--ll~~lk~~- 190 (582)
=..-|+-+.++.+.++ +.+|+++|||+|++++.+... ++++.+||+||++ |-|.+-|+ ++..+...
T Consensus 240 WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~ 319 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQ 319 (708)
T ss_pred EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhcc
Confidence 1112666677776654 668999999999999987665 8899999999999 33333332 22222111
Q ss_pred HhhC------CCceEEEecccC--ChHHHHhhhCCCCEEeeC-------------------C----------ceeceeEE
Q 037717 191 INYR------PDLKLLISSATL--DAEKFSDYFGSAPIFKIP-------------------G----------RRYPVELF 233 (582)
Q Consensus 191 ~~~~------~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~-------------------g----------r~~~v~~~ 233 (582)
.... +..+-+++|||+ .+..+++.--..|+..-- + -+-.+..+
T Consensus 320 ~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qr 399 (708)
T KOG0348|consen 320 NAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQR 399 (708)
T ss_pred chhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhc
Confidence 0111 236778999999 678888754444433220 0 00112233
Q ss_pred EecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhc----c---------CCCCCCeEEEEecC
Q 037717 234 YTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRG----L---------GTKIAELIICPIYA 300 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~----~---------~~~~~~~~v~~lh~ 300 (582)
|...|..-.+-.....+.+.....+..+++||+.+.+.++--++++.+.... . .+-..++.++-+||
T Consensus 400 y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG 479 (708)
T KOG0348|consen 400 YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG 479 (708)
T ss_pred eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecC
Confidence 4444444334444445555555566678999999999999988888765432 0 01122467899999
Q ss_pred CCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCC
Q 037717 301 NLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERT 380 (582)
Q Consensus 301 ~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~ 380 (582)
+|++++|..+|+.|.....-|++|||+|++|+|+|+|+.|| .|| .|.|.++|+||+||+.|.
T Consensus 480 sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV--------QYd----------~P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 480 SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV--------QYD----------PPFSTADYLHRVGRTARA 541 (708)
T ss_pred chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE--------EeC----------CCCCHHHHHHHhhhhhhc
Confidence 99999999999999999999999999999999999999999 566 467889999999999888
Q ss_pred CC-CeEEEe--eChhhhhhhhh
Q 037717 381 GP-GKCFRL--YTLHNYHRIWM 399 (582)
Q Consensus 381 ~~-G~~~~L--~~~~~~~~~~~ 399 (582)
|. |....+ -.+.+|.+.+.
T Consensus 542 G~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 542 GEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred cCCCceEEEecccHHHHHHHHH
Confidence 85 665444 44566666555
No 48
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.2e-31 Score=273.40 Aligned_cols=290 Identities=22% Similarity=0.295 Sum_probs=205.0
Q ss_pred HHHHHHHHhCCCeEEEECCCCCchhc--hHhhh---hcc-------------chHHHHHHHHH---HHHHHhCCccCcEE
Q 037717 70 WEELLQAVSGYPVLAIVGETGSGKTT--QIPQY---LYE-------------PRWVAAMSVAA---RVSQEMGVKLGHEV 128 (582)
Q Consensus 70 ~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~---ll~-------------P~r~~a~~~a~---~va~~~~~~~g~~v 128 (582)
|...|....-+++++.||.||||||. .+|.+ |+. |+|.+|+|+.. .+|+-... .|
T Consensus 208 Q~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I----~~ 283 (691)
T KOG0338|consen 208 QVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDI----TV 283 (691)
T ss_pred hhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccc----ee
Confidence 34444545566778999999999994 44432 332 99999999854 34444443 44
Q ss_pred eEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhhCC-CceE
Q 037717 129 GYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP-DLKL 199 (582)
Q Consensus 129 gy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~-~~ki 199 (582)
|..+.+-+ ......+|+++|||+|.+++.+.+. |.++.++|+|||+ |.++..| -.-++.+++..| +.|.
T Consensus 284 ~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegF-ademnEii~lcpk~RQT 361 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGF-ADEMNEIIRLCPKNRQT 361 (691)
T ss_pred eeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHH-HHHHHHHHHhccccccc
Confidence 44443322 2235689999999999999998886 8999999999999 8877544 445666666554 6789
Q ss_pred EEecccC--ChHHHHhhhCCCCEEe--eCCceec--eeEEEe-cCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Q 037717 200 LISSATL--DAEKFSDYFGSAPIFK--IPGRRYP--VELFYT-KAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEI 272 (582)
Q Consensus 200 i~~SAT~--~~~~~~~~f~~~~v~~--i~gr~~~--v~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 272 (582)
+++|||| .++.++..--+.||-. -+....+ +...|. -.|..+....++...+ ....-...++||+.+++.+
T Consensus 362 mLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l--~~rtf~~~~ivFv~tKk~A 439 (691)
T KOG0338|consen 362 MLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL--ITRTFQDRTIVFVRTKKQA 439 (691)
T ss_pred eeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH--HHHhcccceEEEEehHHHH
Confidence 9999999 6677777644444322 1111111 111111 1112222222222111 1112246799999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeec
Q 037717 273 ERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYN 352 (582)
Q Consensus 273 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd 352 (582)
..+.-+|-- -++.+.-+||+|++++|-..++.|+.+.+.|+|||++|++|+||++|..|||+.
T Consensus 440 HRl~IllGL---------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~-------- 502 (691)
T KOG0338|consen 440 HRLRILLGL---------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYA-------- 502 (691)
T ss_pred HHHHHHHHH---------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEecc--------
Confidence 887655532 467888899999999999999999999999999999999999999999999443
Q ss_pred CCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 353 PKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 353 ~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
.|.|...|+||.||+.|.|. |..+.|..+.+-
T Consensus 503 ----------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 503 ----------MPKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred ----------CchhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 46777789999999999996 999999998743
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=5.4e-31 Score=308.73 Aligned_cols=277 Identities=19% Similarity=0.203 Sum_probs=190.7
Q ss_pred EECCCCCchhc--hHhhh--hc-------------c--------chHHHHHHHHHHHHHH----------hCC-ccCcEE
Q 037717 85 IVGETGSGKTT--QIPQY--LY-------------E--------PRWVAAMSVAARVSQE----------MGV-KLGHEV 128 (582)
Q Consensus 85 v~a~TGSGKTt--~ip~~--ll-------------~--------P~r~~a~~~a~~va~~----------~~~-~~g~~v 128 (582)
|++|||||||. .+|.+ ++ . |.|.++.++.+.+..- ++. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999993 33321 10 1 9999999998876431 111 223344
Q ss_pred eEEEeeccc-------CCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhC
Q 037717 129 GYSIRFEDC-------TSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYR 194 (582)
Q Consensus 129 gy~v~~~~~-------~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~ 194 (582)
+... ++.. .....+|+++||+.|..++.+.. .++++++|||||+| .||.+....+..++.++.
T Consensus 81 ~vrt-GDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~-- 157 (1490)
T PRK09751 81 GIRT-GDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH-- 157 (1490)
T ss_pred EEEE-CCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--
Confidence 4221 2211 12357999999999988776442 48999999999999 578888888888877643
Q ss_pred CCceEEEecccC-ChHHHHhhhCCC-CEEeeC---CceeceeEEEecCCchhH---------------HH----HHHHHH
Q 037717 195 PDLKLLISSATL-DAEKFSDYFGSA-PIFKIP---GRRYPVELFYTKAPEVDY---------------IE----AAIVTA 250 (582)
Q Consensus 195 ~~~kii~~SAT~-~~~~~~~~f~~~-~v~~i~---gr~~~v~~~~~~~~~~~~---------------~~----~~~~~~ 250 (582)
.+.|+|++|||+ |++.+++|+++. ++..+. .+..++++........+. .. .....+
T Consensus 158 ~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 158 TSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred CCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 568999999999 999999999754 432221 122334332211110000 00 001112
Q ss_pred HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhcc------------------CC------CCCCeEEEEecCCCCHHH
Q 037717 251 LQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGL------------------GT------KIAELIICPIYANLPTEL 306 (582)
Q Consensus 251 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~------------------~~------~~~~~~v~~lh~~l~~~~ 306 (582)
+... ...+++|||++|++.++.++..|++..... +. ......+..+||+|++++
T Consensus 238 l~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 238 LDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 2211 235789999999999999999997643210 00 001234678999999999
Q ss_pred HHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCe
Q 037717 307 QAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGK 384 (582)
Q Consensus 307 r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~ 384 (582)
|..|++.|++|.++|||||+++|+||||++|++||+.| .|.|.++|.||+|||||...|.
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~g------------------sP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA------------------TPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeC------------------CCCCHHHHHHHhCCCCCCCCCc
Confidence 99999999999999999999999999999999999433 3788999999999999975443
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=287.10 Aligned_cols=295 Identities=21% Similarity=0.193 Sum_probs=218.8
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc--------------------chHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE--------------------PRWVAAMS 111 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~--------------------P~r~~a~~ 111 (582)
....+..+.+..- ..+.|..++..+.++++++|+||||||||..+-..+++ |-|+++..
T Consensus 10 ~~v~~~~~~~~~~-~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTS-LTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 3445555555444 45567788889999999999999999999443333222 99999999
Q ss_pred HHHHHHHHhCCccCcEEeEEEeeccc--------CCCCccEEEEChHHHHHHHHcCCC---CCCCCceEeeccc-----C
Q 037717 112 VAARVSQEMGVKLGHEVGYSIRFEDC--------TSDKTVLKYMTDCMLLREIVIEPS---LESYSVLIVDEAQ-----E 175 (582)
Q Consensus 112 ~a~~va~~~~~~~g~~vgy~v~~~~~--------~~~~t~I~~~T~g~Ll~~l~~~~~---l~~~~~vViDE~H-----e 175 (582)
+-.++-.- +...|..| .+|..+. ...-.+|+++||+.|.-.+.+... |.++.+|||||+| +
T Consensus 89 i~~rL~~~-~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 89 IRRRLEEP-LRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHH-HHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 97776432 22334444 2332222 123468999999999877765433 9999999999999 7
Q ss_pred CCcchhHHHHHHHHHHhhCCCceEEEecccC-ChHHHHhhhCCC----CEEeeCCc-eeceeEEEecCCch---hHHHHH
Q 037717 176 RTLSTDNLFGLLKDLINYRPDLKLLISSATL-DAEKFSDYFGSA----PIFKIPGR-RYPVELFYTKAPEV---DYIEAA 246 (582)
Q Consensus 176 R~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~~~~~~f~~~----~v~~i~gr-~~~v~~~~~~~~~~---~~~~~~ 246 (582)
||...-+.|.+|+.+.. ++|-|++|||+ +++..++|+.+. .++.+.+. ...+++........ ......
T Consensus 166 RG~~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHH
Confidence 99998888888887654 89999999999 999999999754 34554443 33344433222111 112233
Q ss_pred HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC
Q 037717 247 IVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATN 326 (582)
Q Consensus 247 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ 326 (582)
...+..+... ...+|||+||+..+|.++..|.+.. ...+..+||+++.++|..+++.+++|..|+||||+
T Consensus 243 ~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 243 YERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred HHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 3344444333 3589999999999999999998743 25688899999999999999999999999999999
Q ss_pred CCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC
Q 037717 327 IAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG 381 (582)
Q Consensus 327 iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~ 381 (582)
.+|.||||.+|+.|| +...|-|.+...||+||+|+.-
T Consensus 313 SLELGIDiG~vdlVI------------------q~~SP~sV~r~lQRiGRsgHr~ 349 (814)
T COG1201 313 SLELGIDIGDIDLVI------------------QLGSPKSVNRFLQRIGRAGHRL 349 (814)
T ss_pred chhhccccCCceEEE------------------EeCCcHHHHHHhHhcccccccc
Confidence 999999999999999 4455777888999999999654
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=1.5e-29 Score=289.45 Aligned_cols=289 Identities=18% Similarity=0.193 Sum_probs=202.5
Q ss_pred CCCChHHHHHHHHHHhCC------CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCcc
Q 037717 63 TLPIYPFWEELLQAVSGY------PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~------~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~ 124 (582)
.....+.|.+.++.+..+ .+.+++||||||||..+-.+++. |++++|.|.+..+.+.+.. .
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~ 527 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFAN-F 527 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhcc-C
Confidence 344577888888888764 67899999999999543322221 9999999999988776542 2
Q ss_pred CcEEeEEEeecc----------cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC
Q 037717 125 GHEVGYSIRFED----------CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR 194 (582)
Q Consensus 125 g~~vgy~v~~~~----------~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~ 194 (582)
+..++.-.++.. ....+.+|+++||..+ ..+-.+.++++|||||+|..+... ...+ ....
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~~---~~~L---~~~~ 597 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVKQ---KEKL---KELR 597 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchhH---HHHH---HhcC
Confidence 333332222111 0123578999999533 233358999999999999655432 1122 2244
Q ss_pred CCceEEEecccCChHHHHhhh-CC--CCEEee-CCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Q 037717 195 PDLKLLISSATLDAEKFSDYF-GS--APIFKI-PGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQD 270 (582)
Q Consensus 195 ~~~kii~~SAT~~~~~~~~~f-~~--~~v~~i-~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 270 (582)
++.++++||||+.+..+...+ +. ..++.. +....|+..++..... ..+... +.... ..+++++||||+.+
T Consensus 598 ~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~~---i~~el--~~g~qv~if~n~i~ 671 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVREA---IRREL--LRGGQVFYVHNRIE 671 (926)
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHHH---HHHHH--HcCCeEEEEECCcH
Confidence 678999999999666655432 22 222222 2234567666554322 111111 11111 23689999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCccccee
Q 037717 271 EIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKS 350 (582)
Q Consensus 271 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~ 350 (582)
+++.+++.|.+.. +++.+..+||+|++++|+++++.|++|+.+|||||+++|+|||+|++++|| .
T Consensus 672 ~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI--------i 736 (926)
T TIGR00580 672 SIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII--------I 736 (926)
T ss_pred HHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE--------E
Confidence 9999999998743 467899999999999999999999999999999999999999999999999 4
Q ss_pred ecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChh
Q 037717 351 YNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLH 392 (582)
Q Consensus 351 yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~ 392 (582)
||... .+.+++.||+||+||.+. |.||.+++..
T Consensus 737 ~~a~~---------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADK---------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCC---------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 44422 234478999999999985 9999999754
No 52
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.2e-30 Score=252.91 Aligned_cols=303 Identities=18% Similarity=0.196 Sum_probs=226.9
Q ss_pred hHHHHHHHHHHhC--CCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 67 YPFWEELLQAVSG--YPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 67 ~~~~~~il~~i~~--~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
.+.|+..+..+.. .+++|..+..|+|||+.+..-++. |+|.+|.+... |-.+||...+.+..
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~e-Vv~eMGKf~~ita~ 192 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGE-VVEEMGKFTELTAS 192 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHH-HHHHhcCceeeeEE
Confidence 3456666666654 478999999999999765554443 99999999855 77889988877888
Q ss_pred EEEeecccCC---CCccEEEEChHHHHHHHHc-CC-CCCCCCceEeeccc----CCCcchhHHHHHHHHHHhhCCCceEE
Q 037717 130 YSIRFEDCTS---DKTVLKYMTDCMLLREIVI-EP-SLESYSVLIVDEAQ----ERTLSTDNLFGLLKDLINYRPDLKLL 200 (582)
Q Consensus 130 y~v~~~~~~~---~~t~I~~~T~g~Ll~~l~~-~~-~l~~~~~vViDE~H----eR~~~~d~ll~~lk~~~~~~~~~kii 200 (582)
|.+|...... -...|++.|||.+++++.. .- .+..+.++|+|||+ .+|.. |..+.+.+. ..++.+++
T Consensus 193 yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~-D~S~rI~~~---lP~~~Qll 268 (477)
T KOG0332|consen 193 YAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQ-DQSIRIMRS---LPRNQQLL 268 (477)
T ss_pred EEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccccc-ccchhhhhh---cCCcceEE
Confidence 9988663222 2458999999999999876 32 28899999999998 23322 232222222 23589999
Q ss_pred EecccC--ChHHHHhh-hCCCCEEeeCCc---eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 037717 201 ISSATL--DAEKFSDY-FGSAPIFKIPGR---RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIER 274 (582)
Q Consensus 201 ~~SAT~--~~~~~~~~-f~~~~v~~i~gr---~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 274 (582)
++|||. .+..|+.- ..++.++.+..+ ..++..+|...+..+.- ...+.+++..-.-|+.+|||.|++.+..
T Consensus 269 LFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K---~~~l~~lyg~~tigqsiIFc~tk~ta~~ 345 (477)
T KOG0332|consen 269 LFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDK---YQALVNLYGLLTIGQSIIFCHTKATAMW 345 (477)
T ss_pred eeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhH---HHHHHHHHhhhhhhheEEEEeehhhHHH
Confidence 999999 44556553 445555555443 56788888776654332 2334444444445899999999999999
Q ss_pred HHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCC
Q 037717 275 AEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPK 354 (582)
Q Consensus 275 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~ 354 (582)
++..+.. .+..+..+||+|.-++|..+.+.|++|.-||+|+||+.++|||++.|++|||+.++-.. +.
T Consensus 346 l~~~m~~---------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~--~~- 413 (477)
T KOG0332|consen 346 LYEEMRA---------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY--TG- 413 (477)
T ss_pred HHHHHHh---------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc--CC-
Confidence 9999987 57789999999999999999999999999999999999999999999999966654321 11
Q ss_pred CCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhhhh
Q 037717 355 TGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHRIW 398 (582)
Q Consensus 355 ~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~~~ 398 (582)
-.....|.||+||+||.|. |..|.|.....-.+++
T Consensus 414 ---------~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 414 ---------EPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred ---------CCCHHHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 1456689999999999997 9999988765544433
No 53
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.2e-30 Score=262.52 Aligned_cols=296 Identities=21% Similarity=0.272 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhc--c----------------chHHHHHHHHHHHHHHhCCccCc
Q 037717 67 YPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLY--E----------------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 67 ~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll--~----------------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
++.|.+++.....++.++-+|-||||||- ..|..++ + |+|.+|.|+.. .|+.++...|.
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~-eaKkf~K~ygl 325 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFS-EAKKFGKAYGL 325 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHH-HHHHhhhhccc
Confidence 34466788888899999999999999993 3443322 1 99999999844 34444433332
Q ss_pred EE--eEEE--eec--ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceE
Q 037717 127 EV--GYSI--RFE--DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKL 199 (582)
Q Consensus 127 ~v--gy~v--~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~ki 199 (582)
.+ -|+- ..+ .....++.|+|||||+|+++..-... +.+++++|+||++ |..++.+.-.+-...-..+|+.|.
T Consensus 326 ~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQt 404 (731)
T KOG0339|consen 326 RVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQT 404 (731)
T ss_pred eEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceE
Confidence 22 2211 111 22336789999999999999875554 9999999999999 888888877765555668899999
Q ss_pred EEecccC--ChHHHHhhhCCCCEEeeCCceec----e--eEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Q 037717 200 LISSATL--DAEKFSDYFGSAPIFKIPGRRYP----V--ELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDE 271 (582)
Q Consensus 200 i~~SAT~--~~~~~~~~f~~~~v~~i~gr~~~----v--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 271 (582)
+++|||+ .++.+++-|-..||-.+.|.... + .++..+ .+...+...+ .++......|++|+|++.+.+
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~-s~~~Kl~wl~---~~L~~f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCP-SEEKKLNWLL---RHLVEFSSEGKVLIFVTKKAD 480 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeecc-CcHHHHHHHH---HHhhhhccCCcEEEEEeccCC
Confidence 9999999 78888887777777666654221 1 111222 1122222211 122222346899999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceee
Q 037717 272 IERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSY 351 (582)
Q Consensus 272 i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~y 351 (582)
+++++..|.- .++.+..+||++.+.+|.+++..|+.+...|++||+++++|+|||++..||+ |
T Consensus 481 ~e~i~a~Lkl---------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------y 543 (731)
T KOG0339|consen 481 AEEIAANLKL---------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------Y 543 (731)
T ss_pred HHHHHHHhcc---------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------c
Confidence 9999998865 6899999999999999999999999999999999999999999999999994 4
Q ss_pred cCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 352 NPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 352 d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
|.-.. ...+.||+||+||.|. |..|.|.|+.+-+
T Consensus 544 D~ard----------IdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 544 DFARD----------IDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred cccch----------hHHHHHHhhhcccccccceeeEEechhhHH
Confidence 43333 3358999999999997 9999999987654
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=9.3e-29 Score=275.58 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=183.1
Q ss_pred CCCChHHHHHHHHHHhCCC-eEEEECCCCCchhchHhhhhc--c-------------chHHHHHHHHHHHHHHhCCcc--
Q 037717 63 TLPIYPFWEELLQAVSGYP-VLAIVGETGSGKTTQIPQYLY--E-------------PRWVAAMSVAARVSQEMGVKL-- 124 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~-~viv~a~TGSGKTt~ip~~ll--~-------------P~r~~a~~~a~~va~~~~~~~-- 124 (582)
....+++|.+++..+..++ .+++.+|||||||..+-.+++ . |+|++|.|+++.+.... ..+
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~-k~l~~ 91 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG-ERLPD 91 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHH-HHhcc
Confidence 3448899999999999887 677789999999964322221 1 99999999976554321 111
Q ss_pred ---------------------CcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcC-------------CCCCC
Q 037717 125 ---------------------GHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIE-------------PSLES 164 (582)
Q Consensus 125 ---------------------g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~-------------~~l~~ 164 (582)
+..+..-..+.+ ....+.+|+++|.+++.+..+.. ..|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 111221111111 12346789999977665544310 12688
Q ss_pred CCceEeecccCCCcchhHHHHHHHHHHhhCC---CceEEEecccCC--hHHHHhhhCCCCE-EeeCCceec--eeEEEec
Q 037717 165 YSVLIVDEAQERTLSTDNLFGLLKDLINYRP---DLKLLISSATLD--AEKFSDYFGSAPI-FKIPGRRYP--VELFYTK 236 (582)
Q Consensus 165 ~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~---~~kii~~SAT~~--~~~~~~~f~~~~v-~~i~gr~~~--v~~~~~~ 236 (582)
++++||||||......+.+..+++... ..+ +.|+++||||++ ...+...+...+. +.+..+... -..+|..
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~ 250 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVP 250 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEe
Confidence 999999999955444444444444321 112 379999999993 4455555543332 222221111 1122333
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHH-----Hhc
Q 037717 237 APEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQA-----KIF 311 (582)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~-----~v~ 311 (582)
.+....+...+..+.... ...++++||||+|++.++.+++.|.+. ++ ..+||+|++.+|+ +++
T Consensus 251 v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il 318 (844)
T TIGR02621 251 PSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIF 318 (844)
T ss_pred cChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHH
Confidence 222222222222222222 344689999999999999999999762 23 7899999999999 778
Q ss_pred CCCCC----CC-------cEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCC
Q 037717 312 EPTPE----RA-------RKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERT 380 (582)
Q Consensus 312 ~~~~~----g~-------~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~ 380 (582)
+.|++ |. .+|||||+++|+||||+. ++|| .+. .+..+|+||+||+||.
T Consensus 319 ~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI--------~d~------------aP~esyIQRiGRtgR~ 377 (844)
T TIGR02621 319 NRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLV--------CDL------------APFESMQQRFGRVNRF 377 (844)
T ss_pred HHHhccccccccccccccceEEeccchhhhcccCCc-ceEE--------ECC------------CCHHHHHHHhcccCCC
Confidence 88876 43 689999999999999996 6777 111 2347899999999999
Q ss_pred CC
Q 037717 381 GP 382 (582)
Q Consensus 381 ~~ 382 (582)
|.
T Consensus 378 G~ 379 (844)
T TIGR02621 378 GE 379 (844)
T ss_pred CC
Confidence 86
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=6.5e-29 Score=280.16 Aligned_cols=287 Identities=15% Similarity=0.164 Sum_probs=197.6
Q ss_pred CCChHHHHHHHHHHhCC------CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccC
Q 037717 64 LPIYPFWEELLQAVSGY------PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLG 125 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~------~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g 125 (582)
....+.|++++..+..+ .+.+++||||||||......++. |++++|.|.+..+.+... ..|
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE-PLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh-hcC
Confidence 33688899999888765 37899999999999544333222 999999999988876543 234
Q ss_pred cEEeEEEeecc----------cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCC
Q 037717 126 HEVGYSIRFED----------CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP 195 (582)
Q Consensus 126 ~~vgy~v~~~~----------~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~ 195 (582)
..++.-..... ..+...+|+++|++.+.. .-.+.++++|||||+|..+...- ..+.....
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~qr------~~l~~~~~ 408 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQR------LALREKGE 408 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHHHH------HHHHhcCC
Confidence 44444322221 123368999999987643 22488999999999996443321 11222334
Q ss_pred CceEEEecccCChHHHHh-hhCCCCEEee---CCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHH-
Q 037717 196 DLKLLISSATLDAEKFSD-YFGSAPIFKI---PGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQD- 270 (582)
Q Consensus 196 ~~kii~~SAT~~~~~~~~-~f~~~~v~~i---~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~- 270 (582)
..++++||||+.+..++. .+++..+..+ +....|+...+......+ ..+..+.... ..+++++||||..+
T Consensus 409 ~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~---~~~~~i~~~~--~~g~q~~v~~~~ie~ 483 (681)
T PRK10917 409 NPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRD---EVYERIREEI--AKGRQAYVVCPLIEE 483 (681)
T ss_pred CCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHH---HHHHHHHHHH--HcCCcEEEEEccccc
Confidence 678999999996665543 3444333322 222345666655443322 2222222222 34679999999654
Q ss_pred -------HHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 271 -------EIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 271 -------~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
.++.+++.|.+.. +++.+..+||+|++++|+++++.|++|+.+|||||+++|+|||+|++++||
T Consensus 484 s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI-- 554 (681)
T PRK10917 484 SEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV-- 554 (681)
T ss_pred ccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE--
Confidence 3445555555432 346799999999999999999999999999999999999999999999999
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeC
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYT 390 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~ 390 (582)
.||+.. .+.+++.||+||+||.| +|.||.+++
T Consensus 555 ------i~~~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 555 ------IENAER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ------EeCCCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 555432 13457899999999998 499999996
No 56
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=7e-31 Score=259.52 Aligned_cols=329 Identities=21% Similarity=0.263 Sum_probs=225.5
Q ss_pred CCCCCCccccccCCcccccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhc--c-----
Q 037717 33 DGDNFDEFESELPNKSVVKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLY--E----- 103 (582)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll--~----- 103 (582)
.|+.++++..+..+.-.++.-+..+.+. ...--.+.|-+-+..+..+++.|-.|-|||||| +.+|.+++ +
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~K-GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKK-GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhc-CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 5666666665555554555555555553 222223344556677889999999999999999 56676543 2
Q ss_pred --------------chHHHHHHHHHHHHHH---h---CCcc---CcEE-eEEEeec-ccCCCCccEEEEChHHHHHHHHc
Q 037717 104 --------------PRWVAAMSVAARVSQE---M---GVKL---GHEV-GYSIRFE-DCTSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 104 --------------P~r~~a~~~a~~va~~---~---~~~~---g~~v-gy~v~~~-~~~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
|.|.+|.|...-+.+. + |.+. +.-+ |..++.. +....+.+|+++|||+|.+++..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 9999999885433221 1 1110 0001 1111111 23456789999999999999977
Q ss_pred CCC-CCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChHHHHhhhC---CCCEEeeCCceeceeEE
Q 037717 159 EPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAEKFSDYFG---SAPIFKIPGRRYPVELF 233 (582)
Q Consensus 159 ~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~~~~~~f~---~~~v~~i~gr~~~v~~~ 233 (582)
.-. |.-+.++.+|||+ |.+++.+--. +|.+.. .....|.+++|||+ +.+++.|-. ..|+....||.......
T Consensus 320 K~~sLd~CRyL~lDEAD-RmiDmGFEdd-ir~iF~~FK~QRQTLLFSATM-P~KIQ~FAkSALVKPvtvNVGRAGAAsld 396 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEAD-RMIDMGFEDD-IRTIFSFFKGQRQTLLFSATM-PKKIQNFAKSALVKPVTVNVGRAGAASLD 396 (610)
T ss_pred hhccHHHHHHhhhhhHH-HHhhccchhh-HHHHHHHHhhhhheeeeeccc-cHHHHHHHHhhcccceEEecccccccchh
Confidence 655 8889999999999 7777655322 222222 33467899999999 344444432 34555555654433322
Q ss_pred EecCCchhHHHH--HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhc
Q 037717 234 YTKAPEVDYIEA--AIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIF 311 (582)
Q Consensus 234 ~~~~~~~~~~~~--~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 311 (582)
... +..|+.. .+..++.. .....-++|||+..+.+++.+.++|-- .++.++.+|||-.+++|....
T Consensus 397 ViQ--evEyVkqEaKiVylLeC-LQKT~PpVLIFaEkK~DVD~IhEYLLl---------KGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 397 VIQ--EVEYVKQEAKIVYLLEC-LQKTSPPVLIFAEKKADVDDIHEYLLL---------KGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred HHH--HHHHHHhhhhhhhHHHH-hccCCCceEEEeccccChHHHHHHHHH---------ccceeEEeecCcchhHHHHHH
Confidence 222 2234332 23333333 233456899999999999999998864 589999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeC
Q 037717 312 EPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYT 390 (582)
Q Consensus 312 ~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~ 390 (582)
+.|+.|+-.|+|||++|..|+|+|+|.+||| ||. |-...+|+||+||+||.|. |..-.+..
T Consensus 465 ~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDM----------P~eIENYVHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 465 EAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDM----------PEEIENYVHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred HHHhcCCCceEEEecchhccCCCccchhhcc--------CCC----------hHHHHHHHHHhcccCCCCCcceeeeeec
Confidence 9999999999999999999999999999994 442 3445689999999999997 99998888
Q ss_pred hhhhh
Q 037717 391 LHNYH 395 (582)
Q Consensus 391 ~~~~~ 395 (582)
+..-+
T Consensus 527 K~~~e 531 (610)
T KOG0341|consen 527 KNQEE 531 (610)
T ss_pred ccchH
Confidence 86544
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=3.9e-29 Score=280.10 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=197.0
Q ss_pred HHhcCCC--ChHHHHHHHHHHhCC------CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHH
Q 037717 59 EERKTLP--IYPFWEELLQAVSGY------PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 59 ~~r~~lP--i~~~~~~il~~i~~~------~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~ 118 (582)
+....|| ..+.|++++..+..+ .+.+++||||||||..+...++. |++++|.|++..+.+
T Consensus 227 ~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 227 KFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHH
Confidence 3344555 678898888888654 25799999999999654333222 999999999988876
Q ss_pred HhCCccCcEEeEEEeec----------ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHH
Q 037717 119 EMGVKLGHEVGYSIRFE----------DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLK 188 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~----------~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk 188 (582)
.+. ..|..++.-.... ...+.+.+|+++|++.+.+ ...+.++++|||||+|..+..... .+.
T Consensus 307 l~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~qr~---~l~ 378 (630)
T TIGR00643 307 LLA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQRK---KLR 378 (630)
T ss_pred Hhc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHHHH---HHH
Confidence 543 2233343322111 1123457999999997643 234789999999999965543211 111
Q ss_pred HHHhhCCCceEEEecccCChHHHHh-hhCCCCEE---eeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEE
Q 037717 189 DLINYRPDLKLLISSATLDAEKFSD-YFGSAPIF---KIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILV 264 (582)
Q Consensus 189 ~~~~~~~~~kii~~SAT~~~~~~~~-~f~~~~v~---~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLV 264 (582)
.........++++||||+.+..++. .+++..+. ..+....|+..++...... ...+..+.... ..+++++|
T Consensus 379 ~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~~v 453 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQAYV 453 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcEEE
Confidence 1111112678999999986555543 23332221 2233235666665543322 22222221111 23578999
Q ss_pred EcCCHH--------HHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCC
Q 037717 265 FLTGQD--------EIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDG 336 (582)
Q Consensus 265 Fl~~~~--------~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~ 336 (582)
|||..+ .++.+++.|.+.. +++.+..+||+|++++|+.+++.|++|+.+|||||+++|+|||+|+
T Consensus 454 ~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 454 VYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred EEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 999764 4445555555422 4678999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeC
Q 037717 337 IKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYT 390 (582)
Q Consensus 337 v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~ 390 (582)
+++|| .||+.. .+.+++.||+||+||.| +|.||.++.
T Consensus 527 v~~VI--------i~~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 527 ATVMV--------IEDAER---------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcEEE--------EeCCCc---------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999 455432 23467999999999988 599999993
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2.2e-29 Score=265.09 Aligned_cols=279 Identities=20% Similarity=0.175 Sum_probs=182.3
Q ss_pred eEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEE------Eeecc-----
Q 037717 82 VLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYS------IRFED----- 136 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~------v~~~~----- 136 (582)
+++|+||||||||+...++++. |+|.++.+++.++...++..+|...|.. ...+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4789999999999877776552 9999999999999987765444222110 00000
Q ss_pred ---------cCCCCccEEEEChHHHHHHHHcCCC-------CCCCCceEeecccCCCcc-hhHHHHHHHHHHhhCCCceE
Q 037717 137 ---------CTSDKTVLKYMTDCMLLREIVIEPS-------LESYSVLIVDEAQERTLS-TDNLFGLLKDLINYRPDLKL 199 (582)
Q Consensus 137 ---------~~~~~t~I~~~T~g~Ll~~l~~~~~-------l~~~~~vViDE~HeR~~~-~d~ll~~lk~~~~~~~~~ki 199 (582)
.......|+++||+.++..+..... ....++|||||+|..... .+.++.+++.+. ..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCE
Confidence 0012467999999999988765211 123489999999954422 234444444433 357899
Q ss_pred EEecccCChHHHHhhhCCCCEEeeCCc--eec---eeEE-E-ecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Q 037717 200 LISSATLDAEKFSDYFGSAPIFKIPGR--RYP---VELF-Y-TKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEI 272 (582)
Q Consensus 200 i~~SAT~~~~~~~~~f~~~~v~~i~gr--~~~---v~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 272 (582)
++||||++ +.+.+|+........+.. ..+ ...+ + ............+..++.. ...++++||||++++++
T Consensus 159 i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 159 LLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEF--IKKGGKIAIIVNTVDRA 235 (358)
T ss_pred EEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHH--hhCCCeEEEEECCHHHH
Confidence 99999994 556666643211100000 000 0001 1 0000000001112222222 13468999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHH----hcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccc
Q 037717 273 ERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAK----IFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKV 348 (582)
Q Consensus 273 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~ 348 (582)
+.+++.|.+.. ....+..+||++++.+|.+ +++.|++|..+|||||+++|+|+||| +++||
T Consensus 236 ~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi------- 300 (358)
T TIGR01587 236 QEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMI------- 300 (358)
T ss_pred HHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEE-------
Confidence 99999998742 2346899999999999976 47889999999999999999999997 67777
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcCCCCCCC-----CeEEEeeChhh
Q 037717 349 KSYNPKTGMESLLVNPISKASANQRTGLSERTGP-----GKCFRLYTLHN 393 (582)
Q Consensus 349 ~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-----G~~~~L~~~~~ 393 (582)
.| +.+..+|.||+||+||.|. |..|.++...+
T Consensus 301 -~~------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 301 -TE------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -Ec------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 22 2346789999999999873 36777776554
No 59
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=273.66 Aligned_cols=349 Identities=14% Similarity=0.162 Sum_probs=248.7
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
..+-+..+|++++.+++.+..|+|.|+|.+|||..+..++.- |-+.+..|-.+.+.+.++. ||
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-----vg 368 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD-----VG 368 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc-----cc
Confidence 455688999999999999999999999999999777665432 7777777777766665542 33
Q ss_pred EEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 130 YSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 130 y~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
-+.+|....+.+.+++||+++|..++.++.. ++++..||+||+| |||+.++-++.++. +++++|++|
T Consensus 369 -LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP------~HV~~IlLS 441 (1248)
T KOG0947|consen 369 -LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLP------RHVNFILLS 441 (1248)
T ss_pred -eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecc------ccceEEEEe
Confidence 3456778889999999999999999998877 8999999999999 99999987766654 589999999
Q ss_pred ccC-ChHHHHhhhCCCC-----EEeeCCceeceeEEEecCCc--------hhHH--------------------------
Q 037717 204 ATL-DAEKFSDYFGSAP-----IFKIPGRRYPVELFYTKAPE--------VDYI-------------------------- 243 (582)
Q Consensus 204 AT~-~~~~~~~~f~~~~-----v~~i~gr~~~v~~~~~~~~~--------~~~~-------------------------- 243 (582)
||+ |...|++|.|..+ |+....|+.|++.++..... ..++
T Consensus 442 ATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 442 ATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred ccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 999 9999999998532 45555677777665321100 0000
Q ss_pred ---------------------------HH---HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHh-----------
Q 037717 244 ---------------------------EA---AIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQR----------- 282 (582)
Q Consensus 244 ---------------------------~~---~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~----------- 282 (582)
.. .+..++.......--+++|||-+++.|++.++.|...
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 00 1111222222233358999999999999999998642
Q ss_pred ----------hhccCCCCCCe---------EEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 283 ----------TRGLGTKIAEL---------IICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 283 ----------~~~~~~~~~~~---------~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
+++-+..+|++ -+..+|||+-|--++-|+..|..|-+||++||.+.++|||.|+.++|+|+
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 11222223322 15567999999999999999999999999999999999999988888854
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChh-----hhhhhhh-hhhHhhhh-----HH
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLH-----NYHRIWM-TILCQKYN-----EL 409 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~-----~~~~~~~-~pei~r~~-----~~ 409 (582)
=. ..|.. ...-+...+|.||+|||||.| .|..+.+.+.. +...+.- .|--+.+. .+
T Consensus 682 l~----KhDG~------efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~M 751 (1248)
T KOG0947|consen 682 LR----KHDGN------EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGM 751 (1248)
T ss_pred hh----hccCc------ceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHH
Confidence 22 23322 223467789999999999999 49988887765 2222222 23333333 66
Q ss_pred HHHHHH---hcCCccccccCCCCchH
Q 037717 410 IWKMLS---LFSNVLVNFDFIDPPLE 432 (582)
Q Consensus 410 ~L~l~~---l~~~~~~~f~~~~~p~~ 432 (582)
+|.+.+ +.++++..-.|-+.++.
T Consensus 752 ILnLLRve~lrvEdm~krSf~E~~s~ 777 (1248)
T KOG0947|consen 752 ILNLLRVEALRVEDMMKRSFSEFVSQ 777 (1248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 776654 34555555455444433
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=9.1e-29 Score=288.63 Aligned_cols=290 Identities=18% Similarity=0.172 Sum_probs=199.0
Q ss_pred cCCCChHHHHHHHHHHhCC------CeEEEECCCCCchhchHhhhh----cc--------chHHHHHHHHHHHHHHhCCc
Q 037717 62 KTLPIYPFWEELLQAVSGY------PVLAIVGETGSGKTTQIPQYL----YE--------PRWVAAMSVAARVSQEMGVK 123 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~------~~viv~a~TGSGKTt~ip~~l----l~--------P~r~~a~~~a~~va~~~~~~ 123 (582)
......+.|.+++..+..+ .+++++|+||||||.++-.++ .. |++++|.|++..+.+.++.
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~- 675 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN- 675 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-
Confidence 3444677888888888776 789999999999995432221 11 9999999999988765542
Q ss_pred cCcEEeEEEeeccc----------CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 124 LGHEVGYSIRFEDC----------TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 124 ~g~~vgy~v~~~~~----------~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
.+..++.-.++.+. .....+|+|+||+.+. .+..+.++++|||||+|..+... ...+...
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahrfG~~~------~e~lk~l 745 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHRFGVRH------KERIKAM 745 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhhcchhH------HHHHHhc
Confidence 22233322222111 1235789999997542 23347899999999999654332 1222234
Q ss_pred CCCceEEEecccCChHHHH--hh-hCCCCEEeeCC-ceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 037717 194 RPDLKLLISSATLDAEKFS--DY-FGSAPIFKIPG-RRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQ 269 (582)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~--~~-f~~~~v~~i~g-r~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 269 (582)
.++.++++||||+.+..+. .. +.+..++..+. ...+++.++...... ... ..++.-. ..+|+++||+++.
T Consensus 746 ~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~k---~~il~el--~r~gqv~vf~n~i 819 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VVR---EAILREI--LRGGQVYYLYNDV 819 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcH-HHH---HHHHHHH--hcCCeEEEEECCH
Confidence 5689999999998554333 22 22333343322 234555444332111 111 1112111 1368999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccce
Q 037717 270 DEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVK 349 (582)
Q Consensus 270 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~ 349 (582)
+.++.+++.|.+.. ++..+..+||+|++++|++++..|++|+.+|||||+++|+|||||++++||
T Consensus 820 ~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VI-------- 884 (1147)
T PRK10689 820 ENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII-------- 884 (1147)
T ss_pred HHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEE--------
Confidence 99999999998743 456788999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChh
Q 037717 350 SYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLH 392 (582)
Q Consensus 350 ~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~ 392 (582)
.+++.. .+.++|.||+||+||.+. |.||.+++..
T Consensus 885 i~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 885 IERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred EecCCC---------CCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 332211 123569999999999985 9999988653
No 61
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=243.44 Aligned_cols=310 Identities=20% Similarity=0.219 Sum_probs=220.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhh-cc------------chHHHHHHHHHHHHHHh
Q 037717 56 MLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYL-YE------------PRWVAAMSVAARVSQEM 120 (582)
Q Consensus 56 ~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~l-l~------------P~r~~a~~~a~~va~~~ 120 (582)
.+.+.-...|- +.|++-+.....++++++-|..|+||| +.+|.+= .+ |+|.+|.+..+ ++.++
T Consensus 99 gIfe~G~ekPS-PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq-vc~~l 176 (459)
T KOG0326|consen 99 GIFEKGFEKPS-PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ-VCKEL 176 (459)
T ss_pred HHHHhccCCCC-CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH-HHHHH
Confidence 34444444443 345666666778899999999999999 5666541 11 99999999854 66677
Q ss_pred CCccCcEEeEEEeec----c--cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 121 GVKLGHEVGYSIRFE----D--CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 121 ~~~~g~~vgy~v~~~----~--~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
+...|..|-....+. + ..++..+++++|||++++.....-. ++++..+|+|||+ .-+..|+--.+-+-+.-.
T Consensus 177 skh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~l 255 (459)
T KOG0326|consen 177 SKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFL 255 (459)
T ss_pred hcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhC
Confidence 666665443222221 1 2345679999999999998876544 9999999999999 455555543333333334
Q ss_pred CCCceEEEecccC--ChHHHHh-hhCCCCEEeeCCc--eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCC
Q 037717 194 RPDLKLLISSATL--DAEKFSD-YFGSAPIFKIPGR--RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTG 268 (582)
Q Consensus 194 ~~~~kii~~SAT~--~~~~~~~-~f~~~~v~~i~gr--~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~ 268 (582)
.++.|+++.|||. -+..|-+ |+...-.+..-.. ..-|+.+|.-..+...+.- +.+++ ..-.-.+.+|||++
T Consensus 256 P~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhC-LntLf---skLqINQsIIFCNS 331 (459)
T KOG0326|consen 256 PKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHC-LNTLF---SKLQINQSIIFCNS 331 (459)
T ss_pred CccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhh-HHHHH---HHhcccceEEEecc
Confidence 5678999999999 4555544 4443333332222 2235556654443333221 22222 22223579999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccc
Q 037717 269 QDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKV 348 (582)
Q Consensus 269 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~ 348 (582)
.+.+|.+|+.+.+ -++.+..+|+.|-++.|.+||..|++|..+.+|||+.+-+||||++|.+|||+.++|
T Consensus 332 ~~rVELLAkKITe---------lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk- 401 (459)
T KOG0326|consen 332 TNRVELLAKKITE---------LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK- 401 (459)
T ss_pred chHhHHHHHHHHh---------ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-
Confidence 9999999999987 477888999999999999999999999999999999999999999999999777654
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhhhhh
Q 037717 349 KSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHRIWM 399 (582)
Q Consensus 349 ~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~~~~ 399 (582)
+..+|.||+||+||.|. |.++.|.+-++-.++..
T Consensus 402 -----------------~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~ 436 (459)
T KOG0326|consen 402 -----------------NAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYR 436 (459)
T ss_pred -----------------CHHHHHHHccCCccCCCcceEEEEEehhhhhhHHH
Confidence 44579999999999996 99999999766555443
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.8e-28 Score=260.45 Aligned_cols=295 Identities=21% Similarity=0.239 Sum_probs=204.0
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCCccCcEEeEEE----
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGVKLGHEVGYSI---- 132 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~g~~vgy~v---- 132 (582)
..+-|.++++++.+++++++..|||+||| +|+|..+.+ |--.+-......+ ...| ..+.+--
T Consensus 18 FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l-~~~G----i~A~~lnS~l~ 92 (590)
T COG0514 18 FRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQL-EAAG----IRAAYLNSTLS 92 (590)
T ss_pred cCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHH-HHcC----ceeehhhcccC
Confidence 34458899999999999999999999999 999999887 6433322211111 1122 1121100
Q ss_pred eec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc---CCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 133 RFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ---ERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 133 ~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H---eR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
+.+ .......+++|.+|++|...-..+.. -..+++++||||| +.|.+----+..+..+....|++.++.+
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~Al 172 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLAL 172 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEE
Confidence 000 01123578999999998654332222 5678999999999 5554433344556666667789999999
Q ss_pred cccCChHHHHh---hhC-CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHH
Q 037717 203 SATLDAEKFSD---YFG-SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEI 278 (582)
Q Consensus 203 SAT~~~~~~~~---~f~-~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 278 (582)
|||.+...-.+ -++ +.+.+.+.+-..| .++|...+..+.... +..+.. ......++-||||.|++.++.+++.
T Consensus 173 TATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q-~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 173 TATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQ-LAFLAT-VLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred eCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHH-HHHHHh-hccccCCCeEEEEeeHHhHHHHHHH
Confidence 99996654443 333 2222222211111 122222111111111 111111 2245567899999999999999999
Q ss_pred HHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcc
Q 037717 279 LKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGME 358 (582)
Q Consensus 279 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~ 358 (582)
|.. .++.+.++||||+.++|+.+.+.|..+..+|+|||+...+|||.|||++||+ ||
T Consensus 250 L~~---------~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~------ 306 (590)
T COG0514 250 LRK---------NGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD------ 306 (590)
T ss_pred HHH---------CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec------
Confidence 998 4789999999999999999999999999999999999999999999999993 33
Q ss_pred cccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 359 SLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 359 ~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
.|-|..+|.|-+|||||.| |..|+.||+..+..
T Consensus 307 ----lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 307 ----LPGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ----CCCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 3667788999999999999 59999999987753
No 63
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.2e-29 Score=266.27 Aligned_cols=307 Identities=18% Similarity=0.184 Sum_probs=236.2
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEEeEE
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEVGYS 131 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~vgy~ 131 (582)
+-+.++|...+..+..++.|+|+|.|.+|||..+..++.. |-+.+..|-.+.+-.|++ .+|..
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLM---- 202 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK-DVGLM---- 202 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc-cccee----
Confidence 4478999999999999999999999999999666555443 888888888888888876 23333
Q ss_pred EeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 132 IRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 132 v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
.+|-..++++..++||+++|..++.++.. +..+..||+||+| |||+.++-.+.++. +++|.|.+|||
T Consensus 203 -TGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP------~~vr~VFLSAT 275 (1041)
T KOG0948|consen 203 -TGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP------DNVRFVFLSAT 275 (1041)
T ss_pred -ecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc------ccceEEEEecc
Confidence 33556788899999999999999988776 9999999999999 99998876555543 57899999999
Q ss_pred C-ChHHHHhhhC-----CCCEEeeCCceeceeEEEecCC---------------chhHHHH-------------------
Q 037717 206 L-DAEKFSDYFG-----SAPIFKIPGRRYPVELFYTKAP---------------EVDYIEA------------------- 245 (582)
Q Consensus 206 ~-~~~~~~~~f~-----~~~v~~i~gr~~~v~~~~~~~~---------------~~~~~~~------------------- 245 (582)
+ |+.+|++|.. .|.|+..+-|+-|+..+..+.. +.++..+
T Consensus 276 iPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k 355 (1041)
T KOG0948|consen 276 IPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKK 355 (1041)
T ss_pred CCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccc
Confidence 9 9999999984 4677888888888766533210 1111111
Q ss_pred --------------HHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhh---------------------ccCCCC
Q 037717 246 --------------AIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTR---------------------GLGTKI 290 (582)
Q Consensus 246 --------------~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~---------------------~~~~~~ 290 (582)
.+-.++.........++|||.-++++|+..|-.+...-. .-+..+
T Consensus 356 ~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~L 435 (1041)
T KOG0948|consen 356 GRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDREL 435 (1041)
T ss_pred cccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccc
Confidence 011122222223346899999999999999987754211 112223
Q ss_pred CCe---------EEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCccccc
Q 037717 291 AEL---------IICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLL 361 (582)
Q Consensus 291 ~~~---------~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~ 361 (582)
|.+ -+...||||-|--++-|+-.|.+|-+||++||.+.+.|+|.|+-++|. .....||.. .
T Consensus 436 Pqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG~------~ 505 (1041)
T KOG0948|consen 436 PQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDGK------K 505 (1041)
T ss_pred hHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCCc------c
Confidence 322 144569999999999999999999999999999999999999888887 556667654 4
Q ss_pred ccccCHHhHHHHhcCCCCCC---CCeEEEeeChh
Q 037717 362 VNPISKASANQRTGLSERTG---PGKCFRLYTLH 392 (582)
Q Consensus 362 ~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~ 392 (582)
-.|+|-.+|+||+|||||.| .|+|+.+..+.
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 57999999999999999999 49999998865
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=246.29 Aligned_cols=304 Identities=21% Similarity=0.201 Sum_probs=214.2
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
+-...||..+......+ +++|+.|||=|||+.+...+.. |++-++.|-+..+.+-++.+....+..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l 92 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL 92 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee
Confidence 33567888888766665 5888999999999776655443 999999999999999888765544332
Q ss_pred E--Eeecc--cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 131 S--IRFED--CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 131 ~--v~~~~--~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
. ++-+. ..-.+.+|+|+||.++.+-+..+.. +.+++|+|+|||| |..-.-....+.+..++...+..+++||||
T Consensus 93 tGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTAS 171 (542)
T COG1111 93 TGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTAS 171 (542)
T ss_pred cCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecC
Confidence 2 11111 1124679999999999999988876 9999999999999 776655566667777778889999999999
Q ss_pred C--ChHHHHhhhCCCCEEee----CC----c--eeceeEEEecCC-----------------------------------
Q 037717 206 L--DAEKFSDYFGSAPIFKI----PG----R--RYPVELFYTKAP----------------------------------- 238 (582)
Q Consensus 206 ~--~~~~~~~~f~~~~v~~i----~g----r--~~~v~~~~~~~~----------------------------------- 238 (582)
+ +.+.+.+-..+-.+-.+ +. + ...+++.+.+.+
T Consensus 172 PGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~ 251 (542)
T COG1111 172 PGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPV 251 (542)
T ss_pred CCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcc
Confidence 9 78888776543211111 10 0 111222221100
Q ss_pred -chh-------------------------------------------------HHH------------------------
Q 037717 239 -EVD-------------------------------------------------YIE------------------------ 244 (582)
Q Consensus 239 -~~~-------------------------------------------------~~~------------------------ 244 (582)
..+ |+.
T Consensus 252 ~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~ 331 (542)
T COG1111 252 SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFK 331 (542)
T ss_pred cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhH
Confidence 000 000
Q ss_pred HHHH----------------HHHHH----HhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEE-----ec
Q 037717 245 AAIV----------------TALQI----HVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICP-----IY 299 (582)
Q Consensus 245 ~~~~----------------~~~~i----~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~-----lh 299 (582)
.++. .+..+ ....++..+|||..-++.++.+.+.|..... ... ....+ .-
T Consensus 332 ~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~----~~~-~rFiGQa~r~~~ 406 (542)
T COG1111 332 RALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI----KAR-VRFIGQASREGD 406 (542)
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC----cce-eEEeeccccccc
Confidence 0000 00000 1112346899999999999999999877421 111 11111 13
Q ss_pred CCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCC
Q 037717 300 ANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSER 379 (582)
Q Consensus 300 ~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR 379 (582)
.||++.+|.++++.|+.|..+|+|||+|+|.|+|||++++|| .|+|- .|.--++||.||+||
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi--------fYEpv----------pSeIR~IQR~GRTGR 468 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI--------FYEPV----------PSEIRSIQRKGRTGR 468 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE--------EecCC----------cHHHHHHHhhCcccc
Confidence 689999999999999999999999999999999999999999 77754 455568999999999
Q ss_pred CCCCeEEEeeChh
Q 037717 380 TGPGKCFRLYTLH 392 (582)
Q Consensus 380 ~~~G~~~~L~~~~ 392 (582)
..+|..|.|.++.
T Consensus 469 ~r~Grv~vLvt~g 481 (542)
T COG1111 469 KRKGRVVVLVTEG 481 (542)
T ss_pred CCCCeEEEEEecC
Confidence 9999999999987
No 65
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.2e-29 Score=260.74 Aligned_cols=313 Identities=24% Similarity=0.250 Sum_probs=211.9
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhh--cc------------------------
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYL--YE------------------------ 103 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~l--l~------------------------ 103 (582)
.-+..+...-.+-|...+...+..++.+..+++-.|+|||||| +-||..- ++
T Consensus 191 ~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~t 270 (731)
T KOG0347|consen 191 EILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVT 270 (731)
T ss_pred HHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEec
Confidence 4555666666777777777777788888899999999999999 5566543 11
Q ss_pred chHHHHHHHHHHHHHHh---CCccCcEEeE-EE-eecccCCCCccEEEEChHHHHHHHHcCCC----CCCCCceEeeccc
Q 037717 104 PRWVAAMSVAARVSQEM---GVKLGHEVGY-SI-RFEDCTSDKTVLKYMTDCMLLREIVIEPS----LESYSVLIVDEAQ 174 (582)
Q Consensus 104 P~r~~a~~~a~~va~~~---~~~~g~~vgy-~v-~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~----l~~~~~vViDE~H 174 (582)
|+|.+|.|+.+.+-... +..+...+|. .+ ..+...+...+|+|+|||+|...+..+.. +.+++++||||++
T Consensus 271 PTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD 350 (731)
T KOG0347|consen 271 PTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD 350 (731)
T ss_pred ChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH
Confidence 99999999988765432 2222222221 11 11223355789999999999998876654 7889999999999
Q ss_pred CCCcc---hhHHHHHHHHHH--hhCCCceEEEecccCChHHHHhhhCCC-----------CE---E-eeCCceeceeEEE
Q 037717 175 ERTLS---TDNLFGLLKDLI--NYRPDLKLLISSATLDAEKFSDYFGSA-----------PI---F-KIPGRRYPVELFY 234 (582)
Q Consensus 175 eR~~~---~d~ll~~lk~~~--~~~~~~kii~~SAT~~~~~~~~~f~~~-----------~v---~-~i~gr~~~v~~~~ 234 (582)
|.+. -+-+-.+|+.+. +.++..|.+++|||+.....+..-... ++ + .+.-+.-|.-+..
T Consensus 351 -RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~ 429 (731)
T KOG0347|consen 351 -RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDL 429 (731)
T ss_pred -HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEec
Confidence 5443 233445555544 245678999999999543332211000 00 0 0000011111110
Q ss_pred ecCCchhHHHHHHHHH-----------HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCC
Q 037717 235 TKAPEVDYIEAAIVTA-----------LQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLP 303 (582)
Q Consensus 235 ~~~~~~~~~~~~~~~~-----------~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 303 (582)
. +...-........ +..+...-+|..||||++.+.+..++-.|.. -++..+++|+.|.
T Consensus 430 t--~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~---------L~i~p~~LHA~M~ 498 (731)
T KOG0347|consen 430 T--PQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN---------LDIPPLPLHASMI 498 (731)
T ss_pred C--cchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh---------cCCCCchhhHHHH
Confidence 1 1110000001111 1112234579999999999999999999876 3667889999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-
Q 037717 304 TELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP- 382 (582)
Q Consensus 304 ~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~- 382 (582)
+.+|-+-++.|++..--|++||++|++|+|||+|.+||. | .+|-+-..|+||.||+.|++.
T Consensus 499 QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------Y----------qVPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 499 QKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------Y----------QVPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred HHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------e----------ecCCccceeEecccccccccCC
Confidence 999999999999999999999999999999999999993 3 234555569999999999996
Q ss_pred CeEEEeeChhhh
Q 037717 383 GKCFRLYTLHNY 394 (582)
Q Consensus 383 G~~~~L~~~~~~ 394 (582)
|...-|..+.+.
T Consensus 561 Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 561 GVSVMLCGPQEV 572 (731)
T ss_pred CeEEEEeChHHh
Confidence 999988877653
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=3.6e-27 Score=247.09 Aligned_cols=276 Identities=17% Similarity=0.210 Sum_probs=176.0
Q ss_pred HHHHHHHHHhCCC--eEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhC-------CccCcEEeE
Q 037717 69 FWEELLQAVSGYP--VLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMG-------VKLGHEVGY 130 (582)
Q Consensus 69 ~~~~il~~i~~~~--~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~-------~~~g~~vgy 130 (582)
||.+.++++.+++ +++++||||||||...-..++. |.+.++.+..+++..... ..++...|-
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 5788899988775 5899999999999544332222 999999999888766542 111111111
Q ss_pred EEe----e----------cc--------cCCCCccEEEEChHHHHHHHHc---CC------CCCCCCceEeecccCCCcc
Q 037717 131 SIR----F----------ED--------CTSDKTVLKYMTDCMLLREIVI---EP------SLESYSVLIVDEAQERTLS 179 (582)
Q Consensus 131 ~v~----~----------~~--------~~~~~t~I~~~T~g~Ll~~l~~---~~------~l~~~~~vViDE~HeR~~~ 179 (582)
... . +. .......|+++||++|...+.. .+ .+.++++||+||+|..+..
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 000 0 00 0012456777778888654432 22 2589999999999976653
Q ss_pred hh-HHH---HHHHHHHhhCCCceEEEecccCChHH---HHhh-hCCCCEEeeCCc--ee--------------------c
Q 037717 180 TD-NLF---GLLKDLINYRPDLKLLISSATLDAEK---FSDY-FGSAPIFKIPGR--RY--------------------P 229 (582)
Q Consensus 180 ~d-~ll---~~lk~~~~~~~~~kii~~SAT~~~~~---~~~~-f~~~~v~~i~gr--~~--------------------~ 229 (582)
.. .++ ...+.+.......++|+||||++... +.+. +-+.++..++|+ .+ +
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T TIGR03158 161 QLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPP 240 (357)
T ss_pred cchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccc
Confidence 32 122 22222222223579999999996542 2232 123567777776 11 3
Q ss_pred eeEEEecCCc--hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHH
Q 037717 230 VELFYTKAPE--VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQ 307 (582)
Q Consensus 230 v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 307 (582)
++..+...+. ...+......+.+.....+++++||||++++.++.+++.|.+.. .++.+..+||.+++++|
T Consensus 241 i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 241 VELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAPKKDR 313 (357)
T ss_pred eEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCCHHHH
Confidence 4444443221 11222222333333333456799999999999999999998631 13567889999999999
Q ss_pred HHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCC
Q 037717 308 AKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSE 378 (582)
Q Consensus 308 ~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaG 378 (582)
+++. +.+|+|||+++|+|||||++ +|| + .|.+..+|.||+||+|
T Consensus 314 ~~~~------~~~iLVaTdv~~rGiDi~~~-~vi---------~-----------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERAM------QFDILLGTSTVDVGVDFKRD-WLI---------F-----------SARDAAAFWQRLGRLG 357 (357)
T ss_pred HHhc------cCCEEEEecHHhcccCCCCc-eEE---------E-----------CCCCHHHHhhhcccCC
Confidence 8764 57899999999999999987 555 1 1456789999999998
No 67
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=7.2e-28 Score=270.47 Aligned_cols=313 Identities=19% Similarity=0.189 Sum_probs=236.8
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc----c--------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----E--------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll----~--------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
...+.++++|++.+.+|..++.|+|+||||||||.....++. + |.+++..|....+..+++.. ...|
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~v 193 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMV 193 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhc
Confidence 467789999999999999999999999999999966555443 3 99999999999999888754 2223
Q ss_pred eEEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 129 GYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 129 gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
|. ..+|-..++++.+++||+++|.+++..+.. +..+..||+||+| +||+.++..+..+. .++++|+|
T Consensus 194 GL-~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP------~~v~~v~L 266 (1041)
T COG4581 194 GL-MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP------DHVRFVFL 266 (1041)
T ss_pred cc-eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC------CCCcEEEE
Confidence 33 234667788999999999999999988754 9999999999999 89999888766553 47899999
Q ss_pred cccC-ChHHHHhhhC-----CCCEEeeCCceeceeEEEecCC--------chhHHHHH----H-----------------
Q 037717 203 SATL-DAEKFSDYFG-----SAPIFKIPGRRYPVELFYTKAP--------EVDYIEAA----I----------------- 247 (582)
Q Consensus 203 SAT~-~~~~~~~~f~-----~~~v~~i~gr~~~v~~~~~~~~--------~~~~~~~~----~----------------- 247 (582)
|||+ |++.|+.|++ ++.++..+-|+.|...++.... ..++.... .
T Consensus 267 SATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 346 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGD 346 (1041)
T ss_pred eCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccc
Confidence 9999 9999999997 4556777888888888775431 01100000 0
Q ss_pred ---------------------HHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHh-------------------hhccC
Q 037717 248 ---------------------VTALQIHVNEPTGDILVFLTGQDEIERAEEILKQR-------------------TRGLG 287 (582)
Q Consensus 248 ---------------------~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~-------------------~~~~~ 287 (582)
..+++.......-++++|+-++++|+..+..+... +..+.
T Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~ 426 (1041)
T COG4581 347 VGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLA 426 (1041)
T ss_pred cccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcC
Confidence 01112222223358999999999999998877521 11111
Q ss_pred CCCCCe-------------EEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCC
Q 037717 288 TKIAEL-------------IICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPK 354 (582)
Q Consensus 288 ~~~~~~-------------~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~ 354 (582)
....++ -+...|+||-+..+..|+..|..|-+||++||.+.+.|+|+|.-++|+ .....||.
T Consensus 427 ~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~----~~l~K~dG- 501 (1041)
T COG4581 427 EEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF----TSLSKFDG- 501 (1041)
T ss_pred hhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee----eeeEEecC-
Confidence 111111 133559999999999999999999999999999999999999777666 44444553
Q ss_pred CCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeCh
Q 037717 355 TGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTL 391 (582)
Q Consensus 355 ~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~ 391 (582)
-...|.|..+|.|++|||||.| .|..+.+.+.
T Consensus 502 -----~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 502 -----NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred -----CceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 3457899999999999999999 4988888543
No 68
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.8e-28 Score=246.26 Aligned_cols=309 Identities=21% Similarity=0.285 Sum_probs=210.1
Q ss_pred HHhcCCCChHHHHHHHHHHh---------CCCeEEEECCCCCchh--chHhhh--hcc------------chHHHHHHHH
Q 037717 59 EERKTLPIYPFWEELLQAVS---------GYPVLAIVGETGSGKT--TQIPQY--LYE------------PRWVAAMSVA 113 (582)
Q Consensus 59 ~~r~~lPi~~~~~~il~~i~---------~~~~viv~a~TGSGKT--t~ip~~--ll~------------P~r~~a~~~a 113 (582)
......-.++.|..++..+. ..+++.|.|||||||| +.+|.. +.. |+|.+|.|++
T Consensus 153 ~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~ 232 (620)
T KOG0350|consen 153 VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVY 232 (620)
T ss_pred HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHH
Confidence 33455556666776766662 2467999999999999 666643 222 9999999998
Q ss_pred HHHHHHhCCccCcEEeEEEeecc---c--------CCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcc-
Q 037717 114 ARVSQEMGVKLGHEVGYSIRFED---C--------TSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLS- 179 (582)
Q Consensus 114 ~~va~~~~~~~g~~vgy~v~~~~---~--------~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~- 179 (582)
.-+...+. ..|..|+-.....+ . .....+|+++|||+|.+++.+.+. |+++.++|||||+ |.++
T Consensus 233 ~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~q 310 (620)
T KOG0350|consen 233 DTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQ 310 (620)
T ss_pred HHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHH
Confidence 87665443 33444543222111 0 112458999999999999986554 9999999999998 3222
Q ss_pred -----hhHHHHHHHH---------HH-------------------hhCCCceEEEecccC--ChHHHHhhhCCCC-EEee
Q 037717 180 -----TDNLFGLLKD---------LI-------------------NYRPDLKLLISSATL--DAEKFSDYFGSAP-IFKI 223 (582)
Q Consensus 180 -----~d~ll~~lk~---------~~-------------------~~~~~~kii~~SAT~--~~~~~~~~f~~~~-v~~i 223 (582)
.+.++..++. ++ +..+.+..+.+|||+ ++.++.++=-..| ++.+
T Consensus 311 sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v 390 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHV 390 (620)
T ss_pred HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEe
Confidence 1112221111 11 112445578899999 9999998755555 5554
Q ss_pred CCceeceeEEEecCCchh--HH----HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEE
Q 037717 224 PGRRYPVELFYTKAPEVD--YI----EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICP 297 (582)
Q Consensus 224 ~gr~~~v~~~~~~~~~~~--~~----~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 297 (582)
.+. .-..|.-.+... ++ .-....+..........++|+|+++...+..++..|.-...+ ..+.+-.
T Consensus 391 ~~~---~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~~s~ 462 (620)
T KOG0350|consen 391 SKP---LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-----DNFKVSE 462 (620)
T ss_pred ecc---cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-----ccchhhh
Confidence 421 111222111000 00 000112233333344678999999999999999999843332 3445556
Q ss_pred ecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCC
Q 037717 298 IYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLS 377 (582)
Q Consensus 298 lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRa 377 (582)
+.|++....|.+.++.|..|.++|+|||+++++|+|+.+|+.|| .||+ |.|-..|+||+||+
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI--------NYd~----------P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI--------NYDP----------PASDKTYVHRAGRT 524 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe--------ecCC----------CchhhHHHHhhccc
Confidence 88999999999999999999999999999999999999999999 6775 45666799999999
Q ss_pred CCCCC-CeEEEeeChhhhh
Q 037717 378 ERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 378 GR~~~-G~~~~L~~~~~~~ 395 (582)
+|+|. |.||.|.+...-.
T Consensus 525 ARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred ccccCCceEEEeeccccch
Confidence 99997 9999999876543
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=3.9e-27 Score=267.97 Aligned_cols=315 Identities=21% Similarity=0.220 Sum_probs=220.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc----------chHHHHHHHHHHHHHHh
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE----------PRWVAAMSVAARVSQEM 120 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~----------P~r~~a~~~a~~va~~~ 120 (582)
..-...+....+|.||.+.++.+.+++++||+.+|||||| +++|.+ ++. |++++|...+.++.+..
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 3344456677799999999999999999999999999999 566644 221 99999999999998765
Q ss_pred CCccCcEEeEEEeecccC---------CCCccEEEEChHHHHHHHHcCCC-----CCCCCceEeeccc-CCCcc---hhH
Q 037717 121 GVKLGHEVGYSIRFEDCT---------SDKTVLKYMTDCMLLREIVIEPS-----LESYSVLIVDEAQ-ERTLS---TDN 182 (582)
Q Consensus 121 ~~~~g~~vgy~v~~~~~~---------~~~t~I~~~T~g~Ll~~l~~~~~-----l~~~~~vViDE~H-eR~~~---~d~ 182 (582)
....+ .|+.. +++..+ ....+|++++|.||..+++.... ++++++||+||+| -||+. .-.
T Consensus 140 ~~~~~-~v~~~-~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ 217 (851)
T COG1205 140 SDLPG-KVTFG-RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVAL 217 (851)
T ss_pred HhCCC-cceee-eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHH
Confidence 43322 33222 222221 35679999999999987765432 7889999999999 56654 444
Q ss_pred HHHHHHHHHhhC-CCceEEEecccC-ChHHHHhhhCCCCEEe-eCCc--eeceeEEEecCCch---------hHHHHHHH
Q 037717 183 LFGLLKDLINYR-PDLKLLISSATL-DAEKFSDYFGSAPIFK-IPGR--RYPVELFYTKAPEV---------DYIEAAIV 248 (582)
Q Consensus 183 ll~~lk~~~~~~-~~~kii~~SAT~-~~~~~~~~f~~~~v~~-i~gr--~~~v~~~~~~~~~~---------~~~~~~~~ 248 (582)
++..|++.++.. .++++|.+|||+ |+..++.-+.+...-. +.+. ......++...|.. +.... ..
T Consensus 218 llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~-~~ 296 (851)
T COG1205 218 LLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAE-LA 296 (851)
T ss_pred HHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHH-HH
Confidence 555555555433 379999999999 8777765433333222 3332 22222222222210 11111 11
Q ss_pred HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCC
Q 037717 249 TALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIA 328 (582)
Q Consensus 249 ~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ia 328 (582)
.+... .-..+-++|||+-+++.++.+.....+.....+ ..-...+..+||+++.++|.+++..+++|+.+++++||.+
T Consensus 297 ~~~~~-~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Al 374 (851)
T COG1205 297 TLAAL-LVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNAL 374 (851)
T ss_pred HHHHH-HHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhh
Confidence 11111 112356899999999999999866655554444 2223568889999999999999999999999999999999
Q ss_pred ccccccCCeeEEEeCCcccceeecCCCCccccccccc-CHHhHHHHhcCCCCCC-CCeEEEeeChh
Q 037717 329 ETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPI-SKASANQRTGLSERTG-PGKCFRLYTLH 392 (582)
Q Consensus 329 e~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~-S~~~~~QR~GRaGR~~-~G~~~~L~~~~ 392 (582)
|.||||.++..||..|+ |. |..+++||+|||||.+ .+..+..+..+
T Consensus 375 elgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 375 ELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred hhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999995554 55 7889999999999998 45555554444
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=5.6e-27 Score=254.15 Aligned_cols=305 Identities=21% Similarity=0.259 Sum_probs=199.9
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCc
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
-..+|+..||.++.+... ++++||++|||||||..+...+++ |++-++.|....+. .++.....
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~-~~~~~~~~ 135 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFS-IYLIPYSV 135 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHh-hccCcccc
Confidence 367899999999998888 999999999999999887777665 89888887763333 23322111
Q ss_pred EEeEEEeeccc------CCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhhCC-Cc
Q 037717 127 EVGYSIRFEDC------TSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP-DL 197 (582)
Q Consensus 127 ~vgy~v~~~~~------~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~-~~ 197 (582)
.|. ...... .-...++.|+||.+|.+.|.+... |+.++++|+|||| |+.---..-.+++..+.... ..
T Consensus 136 -T~~-l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 136 -TGQ-LGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred -eee-ccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 111 111111 113678999999999998876543 7899999999999 54333333333333333222 33
Q ss_pred eEEEecccC--ChHHHHhhhCCCCEEeeCC----------------ceeceeE---------------------------
Q 037717 198 KLLISSATL--DAEKFSDYFGSAPIFKIPG----------------RRYPVEL--------------------------- 232 (582)
Q Consensus 198 kii~~SAT~--~~~~~~~~f~~~~v~~i~g----------------r~~~v~~--------------------------- 232 (582)
|++++|||+ +.+...++..+--+- ++- ...|+++
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 999999999 777777766421000 000 0011110
Q ss_pred --------EEec---------C---Cc--h---------hH---------------------------------------
Q 037717 233 --------FYTK---------A---PE--V---------DY--------------------------------------- 242 (582)
Q Consensus 233 --------~~~~---------~---~~--~---------~~--------------------------------------- 242 (582)
.|.. . +. . .|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0000 0 00 0 00
Q ss_pred ----H---------------------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEE
Q 037717 243 ----I---------------------EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICP 297 (582)
Q Consensus 243 ----~---------------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 297 (582)
+ +.....+.+.....+...+|||+.+++.++.+.+.|.+. ...+-+ +.+.+..
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir-~~~fiGq 449 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIK-AEIFIGQ 449 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccc-cceeeec
Confidence 0 000001111122334578999999999999999999852 111111 1121211
Q ss_pred e----cCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHH
Q 037717 298 I----YANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQR 373 (582)
Q Consensus 298 l----h~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR 373 (582)
- -.+|++.+|+++++.|+.|..+|||||+|+|.|+||+.++.|| .||..++ .-..+||
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI--------cYd~~sn----------pIrmIQr 511 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI--------CYDYSSN----------PIRMVQR 511 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE--------EecCCcc----------HHHHHHH
Confidence 1 2589999999999999999999999999999999999999999 7876544 3368999
Q ss_pred hcCCCCCCCCeEEEeeChh
Q 037717 374 TGLSERTGPGKCFRLYTLH 392 (582)
Q Consensus 374 ~GRaGR~~~G~~~~L~~~~ 392 (582)
+|| ||...|+|+.|++..
T Consensus 512 rGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred hcc-ccccCCeEEEEEcch
Confidence 999 999999999999943
No 71
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=254.05 Aligned_cols=409 Identities=17% Similarity=0.167 Sum_probs=268.3
Q ss_pred ChHHHHHHHHH-HhCCCeEEEECCCCCchhchHhhhhcc-----------------------chHHHHHHHHHHHHHHhC
Q 037717 66 IYPFWEELLQA-VSGYPVLAIVGETGSGKTTQIPQYLYE-----------------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 66 i~~~~~~il~~-i~~~~~viv~a~TGSGKTt~ip~~ll~-----------------------P~r~~a~~~a~~va~~~~ 121 (582)
+...|..+..+ +....++++|||||+|||-.+-.-+++ |-+.++..+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 33445555544 455678999999999999433322222 878887777666665442
Q ss_pred CccCcEEeEEEeec---ccCCCCccEEEEChHHHHHHHHcC----CCCCCCCceEeeccc----CCCcchhHHHHHHHHH
Q 037717 122 VKLGHEVGYSIRFE---DCTSDKTVLKYMTDCMLLREIVIE----PSLESYSVLIVDEAQ----ERTLSTDNLFGLLKDL 190 (582)
Q Consensus 122 ~~~g~~vgy~v~~~---~~~~~~t~I~~~T~g~Ll~~l~~~----~~l~~~~~vViDE~H----eR~~~~d~ll~~lk~~ 190 (582)
.+|.+|+-..+.. ...-..|.++++||+-.- .+..+ ...+-|+.+||||+| +||+..+.+..+..+.
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ 467 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRR 467 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHH
Confidence 4455554332211 122357999999998542 22222 125678999999998 7999988877765544
Q ss_pred H-hhCCCceEEEecccC-ChHHHHhhhCCCC----EEeeCCceeceeEEEecCCchhHHHH--HHH-HHH-HHHhcCCCC
Q 037717 191 I-NYRPDLKLLISSATL-DAEKFSDYFGSAP----IFKIPGRRYPVELFYTKAPEVDYIEA--AIV-TAL-QIHVNEPTG 260 (582)
Q Consensus 191 ~-~~~~~~kii~~SAT~-~~~~~~~~f~~~~----v~~i~gr~~~v~~~~~~~~~~~~~~~--~~~-~~~-~i~~~~~~g 260 (582)
. ......|++++|||+ |.++.+.|++..+ .+.-.-|+.|++..|....+.+.... +.. ... .+.....++
T Consensus 468 ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~ 547 (1674)
T KOG0951|consen 468 SESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKN 547 (1674)
T ss_pred hhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCC
Confidence 3 344579999999999 9999999887544 23335677888888876544333222 111 111 122233458
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhhh----------c---------------cCCC---CCCeEEEEecCCCCHHHHHHhcC
Q 037717 261 DILVFLTGQDEIERAEEILKQRTR----------G---------------LGTK---IAELIICPIYANLPTELQAKIFE 312 (582)
Q Consensus 261 ~iLVFl~~~~~i~~~~~~L~~~~~----------~---------------~~~~---~~~~~v~~lh~~l~~~~r~~v~~ 312 (582)
++|||+.+++|.-+.|+.+++.+- . .+.+ +-+.-+...|+||...+|..+++
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 999999999999999999985321 0 0111 11334667799999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-----CCeEEE
Q 037717 313 PTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-----PGKCFR 387 (582)
Q Consensus 313 ~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-----~G~~~~ 387 (582)
.|..|.++|+++|.++|+|+|+|+-+++| .....|||..|.- .+.|.-+..||.|||||.+ .|+...
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 99999999999999999999999999999 7788999998843 3589999999999999988 344444
Q ss_pred eeChhhhh-hhhh---hhhHhhhh--HHHHHH-HHhcCCcccc------c------------------cCCCCch----H
Q 037717 388 LYTLHNYH-RIWM---TILCQKYN--ELIWKM-LSLFSNVLVN------F------------------DFIDPPL----E 432 (582)
Q Consensus 388 L~~~~~~~-~~~~---~pei~r~~--~~~L~l-~~l~~~~~~~------f------------------~~~~~p~----~ 432 (582)
=+++-.|. .+|. +.|-++.. .-+|.. ..+|+..... + +..|++. .
T Consensus 700 ~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~ 779 (1674)
T KOG0951|consen 700 DHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRA 779 (1674)
T ss_pred CchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHh
Confidence 44443332 2222 23333332 111111 1122211110 0 1112221 2
Q ss_pred HHHHHHHHHHHHcCCCcCC---C--ccchhchhhhcCCCChHHHHHHHhcccccChH
Q 037717 433 EALLKAFELLYALGALNKA---G--QLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSD 484 (582)
Q Consensus 433 ~~i~~al~~L~~lgal~~~---~--~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~ 484 (582)
+.+.+|.-.|...|.|--+ | +.|.+|++.+.+++.-......-......|.+
T Consensus 780 ~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 780 DLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred hhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 4567888899999988432 3 78999999999999877766666655555554
No 72
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=6.8e-27 Score=258.09 Aligned_cols=327 Identities=19% Similarity=0.214 Sum_probs=233.5
Q ss_pred CCCCCCccccccCCcccccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------
Q 037717 33 DGDNFDEFESELPNKSVVKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE------- 103 (582)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~------- 103 (582)
.|..-+.+..+|..-......+..+++.-.. +..+.|.+++.+|..++.+|.+|.|||||| +.+|.+.+.
T Consensus 356 ~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~-k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~ 434 (997)
T KOG0334|consen 356 KGKECPKPVTSWTQCGLSSKILETLKKLGYE-KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE 434 (997)
T ss_pred ccCCCCcccchHhhCCchHHHHHHHHHhcCC-CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChh
Confidence 3344445555566666666666666443333 566677889999999999999999999999 556666433
Q ss_pred -----------chHHHHHHHHHHHHHHhCCccCcEE--eEE-Eeec---ccCCCCccEEEEChHHHHHHHHcCCC----C
Q 037717 104 -----------PRWVAAMSVAARVSQEMGVKLGHEV--GYS-IRFE---DCTSDKTVLKYMTDCMLLREIVIEPS----L 162 (582)
Q Consensus 104 -----------P~r~~a~~~a~~va~~~~~~~g~~v--gy~-v~~~---~~~~~~t~I~~~T~g~Ll~~l~~~~~----l 162 (582)
|+|.+|.|+.+.+..... .+|..+ -|+ .+.. .....++.|+|||||+.++.+..+.. |
T Consensus 435 ~gdGPi~li~aPtrela~QI~r~~~kf~k-~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnl 513 (997)
T KOG0334|consen 435 EGDGPIALILAPTRELAMQIHREVRKFLK-LLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNL 513 (997)
T ss_pred hCCCceEEEEcCCHHHHHHHHHHHHHHHh-hcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccc
Confidence 999999999776655432 244332 121 1111 12235699999999999988865443 6
Q ss_pred CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCEEe-eCCce---eceeEEEec
Q 037717 163 ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPIFK-IPGRR---YPVELFYTK 236 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~-i~gr~---~~v~~~~~~ 236 (582)
.++.++|+||++ |..++.+.-...+.+-..+|+.|.+++|||. ..+.+++-.-..|+-. +.|+. ..|+..+..
T Consensus 514 rR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 514 RRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV 592 (997)
T ss_pred cccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE
Confidence 677799999999 7767666555555444568999999999999 4566666554566533 33432 123333332
Q ss_pred CC-chhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCC
Q 037717 237 AP-EVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTP 315 (582)
Q Consensus 237 ~~-~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~ 315 (582)
.+ +...+.... .++.. ....+++|||+..++.++.+.+.|.+ .++.+..+||+.++.+|..+++.|+
T Consensus 593 ~~~e~eKf~kL~-eLl~e--~~e~~~tiiFv~~qe~~d~l~~~L~~---------ag~~~~slHGgv~q~dR~sti~dfK 660 (997)
T KOG0334|consen 593 CAIENEKFLKLL-ELLGE--RYEDGKTIIFVDKQEKADALLRDLQK---------AGYNCDSLHGGVDQHDRSSTIEDFK 660 (997)
T ss_pred ecCchHHHHHHH-HHHHH--HhhcCCEEEEEcCchHHHHHHHHHHh---------cCcchhhhcCCCchHHHHhHHHHHh
Confidence 22 222222222 22222 23379999999999999999999986 5777788999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChh
Q 037717 316 ERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLH 392 (582)
Q Consensus 316 ~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~ 392 (582)
+|..++++||+++++|+|++++..|| .||-...+. .|.||.||+||+|+ |.||.+.++.
T Consensus 661 ~~~~~LLvaTsvvarGLdv~~l~Lvv--------nyd~pnh~e----------dyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 661 NGVVNLLVATSVVARGLDVKELILVV--------NYDFPNHYE----------DYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred ccCceEEEehhhhhcccccccceEEE--------EcccchhHH----------HHHHHhcccccCCccceeEEEeChH
Confidence 99999999999999999999999999 555444433 49999999999997 9999998874
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=8.4e-26 Score=247.13 Aligned_cols=283 Identities=13% Similarity=0.095 Sum_probs=189.4
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhh---cc----------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYL---YE----------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~l---l~----------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
...+++|.+++..+..++..++++|||||||..+..++ .. |++.++.|+..++.+......+ .++.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~-~~~~ 191 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE-AMHK 191 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc-ceeE
Confidence 57888999988888888889999999999996554321 11 9999999999988764322211 1111
Q ss_pred EEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC-ChH
Q 037717 131 SIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL-DAE 209 (582)
Q Consensus 131 ~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~ 209 (582)
... ......+.+|+++|++.+.+.. ...+.++++||+||||. .... .+-.+++. ..+..+++++|||+ +..
T Consensus 192 i~~-g~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~~-~~~~il~~---~~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 192 IYS-GTAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTGK-SLTSIITK---LDNCKFKFGLTGSLRDGK 263 (501)
T ss_pred Eec-CcccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccch-hHHHHHHh---hhccceEEEEeccCCCcc
Confidence 111 1122245789999999987643 22478999999999993 2221 12222222 12345789999999 321
Q ss_pred ----HHHhhhCCCCEEeeC-------CceeceeEE--EecCCc--------hhHHH------------HHHHHHHHHHhc
Q 037717 210 ----KFSDYFGSAPIFKIP-------GRRYPVELF--YTKAPE--------VDYIE------------AAIVTALQIHVN 256 (582)
Q Consensus 210 ----~~~~~f~~~~v~~i~-------gr~~~v~~~--~~~~~~--------~~~~~------------~~~~~~~~i~~~ 256 (582)
.+..+||+. ...+. |...++++. +...+. .+|-. ..+........
T Consensus 264 ~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~- 341 (501)
T PHA02558 264 ANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA- 341 (501)
T ss_pred ccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-
Confidence 134466632 11111 211122211 111110 11110 11111111111
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeC-CCCccccccC
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLAT-NIAETSLTID 335 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT-~iae~gidIp 335 (582)
..++++|||+...++++.+++.|.+ .+..+..+||++++++|+.+++.|+.|...||||| +++++|+|+|
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~---------~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKK---------VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHH---------cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 3457899999999999999999987 35678999999999999999999999999999998 8999999999
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCe
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGK 384 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~ 384 (582)
+++.|| +...+-|+..|.||+||+||.++|+
T Consensus 413 ~ld~vI------------------l~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 413 NLHHVI------------------FAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccEEE------------------EecCCcchhhhhhhhhccccCCCCC
Confidence 999999 4455567889999999999999875
No 74
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=233.42 Aligned_cols=309 Identities=20% Similarity=0.229 Sum_probs=213.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhc------------------cchHHHHHHHHH
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLY------------------EPRWVAAMSVAA 114 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll------------------~P~r~~a~~~a~ 114 (582)
..+...-..-|...+ ..++..+..+++++.||||||||| +.+|.+.. .|+|.+|.++..
T Consensus 149 ~nl~~~~F~~Pt~iq-~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~r 227 (593)
T KOG0344|consen 149 ENLQELGFDEPTPIQ-KQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYR 227 (593)
T ss_pred HhHhhCCCCCCCccc-chhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHH
Confidence 344444444454433 367788889999999999999999 55664321 199999999977
Q ss_pred HHHHHh--CCccCcEEe--EEE----eecccCCCCccEEEEChHHHHHHHHcCC---CCCCCCceEeecccCCCcchhHH
Q 037717 115 RVSQEM--GVKLGHEVG--YSI----RFEDCTSDKTVLKYMTDCMLLREIVIEP---SLESYSVLIVDEAQERTLSTDNL 183 (582)
Q Consensus 115 ~va~~~--~~~~g~~vg--y~v----~~~~~~~~~t~I~~~T~g~Ll~~l~~~~---~l~~~~~vViDE~HeR~~~~d~l 183 (582)
.+.... ...-....+ |.. ..-.......++++.||-.+...+..++ .++++.++|+||++ +-..-..+
T Consensus 228 e~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f 306 (593)
T KOG0344|consen 228 EMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFF 306 (593)
T ss_pred HHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhH
Confidence 665443 111111111 110 0001122467899999999999887776 49999999999999 22222233
Q ss_pred HHHHHHHHh--hCCCceEEEecccC--ChHHHHhhhCCCCEEeeCCceec----e--eEEEecCCchhHHHHHHHHHHHH
Q 037717 184 FGLLKDLIN--YRPDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRRYP----V--ELFYTKAPEVDYIEAAIVTALQI 253 (582)
Q Consensus 184 l~~lk~~~~--~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~~----v--~~~~~~~~~~~~~~~~~~~~~~i 253 (582)
...+-++.. ..|++++=++|||+ .++++++-....++..+-|..-. | +..|.... ...+..+.++
T Consensus 307 ~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse-----~~K~lA~rq~ 381 (593)
T KOG0344|consen 307 VEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE-----KGKLLALRQL 381 (593)
T ss_pred HHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc-----hhHHHHHHHH
Confidence 333333322 44899999999999 66777765544444433333211 1 11111111 1123334444
Q ss_pred HhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccc
Q 037717 254 HVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLT 333 (582)
Q Consensus 254 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gid 333 (582)
....-.-++|||+.+.+.+..+...|.. .+++.+-.+||..++.+|++++++|+.|++.|++||+++++|+|
T Consensus 382 v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiD 453 (593)
T KOG0344|consen 382 VASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGID 453 (593)
T ss_pred HhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhcccc
Confidence 4443456899999999999998888852 26788999999999999999999999999999999999999999
Q ss_pred cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
+-|++.||+ || .|-|..+|.||+||+||.|+ |++|.+||+++...
T Consensus 454 f~gvn~VIn--------yD----------~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 454 FKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred ccCcceEEe--------cC----------CCchhHHHHHHhhccCCCCCCcceEEEeccccchh
Confidence 999999994 54 35677789999999999997 99999999976644
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=1.2e-24 Score=251.01 Aligned_cols=302 Identities=20% Similarity=0.220 Sum_probs=199.0
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
..+....||.++...+..+ +++|++|||+|||.+....+.. |++.++.|.+..+...++.. +..+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v 89 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKI 89 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceE
Confidence 3566788999998877776 6899999999999644332221 99999999988887766542 1122
Q ss_pred eEEEeeccc------CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 129 GYSIRFEDC------TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 129 gy~v~~~~~------~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
+. +.++.. ...+.+|+++||+++...+..... +.++++||+||||. .........+.+......+..++++
T Consensus 90 ~~-~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~-~~~~~~~~~i~~~~~~~~~~~~il~ 167 (773)
T PRK13766 90 VV-FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR-AVGNYAYVYIAERYHEDAKNPLVLG 167 (773)
T ss_pred EE-EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc-ccccccHHHHHHHHHhcCCCCEEEE
Confidence 11 111111 113578999999999988876655 88999999999993 3222222223333344456678999
Q ss_pred ecccC--ChHHHHhhhCCC--CEEeeCCce--------eceeEEE--ecCCc----------------------------
Q 037717 202 SSATL--DAEKFSDYFGSA--PIFKIPGRR--------YPVELFY--TKAPE---------------------------- 239 (582)
Q Consensus 202 ~SAT~--~~~~~~~~f~~~--~v~~i~gr~--------~~v~~~~--~~~~~---------------------------- 239 (582)
||||+ +.+.+.+.+..- ..+.+..+. .+..+.+ ...+.
T Consensus 168 lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~ 247 (773)
T PRK13766 168 LTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVS 247 (773)
T ss_pred EEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 99999 444444332210 001110000 0000000 00000
Q ss_pred -------hh-------------------------------------------------HHHH------------------
Q 037717 240 -------VD-------------------------------------------------YIEA------------------ 245 (582)
Q Consensus 240 -------~~-------------------------------------------------~~~~------------------ 245 (582)
.+ |+..
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~ 327 (773)
T PRK13766 248 ISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLV 327 (773)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHH
Confidence 00 0000
Q ss_pred --------------------HHHHHHHHH----hcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCC
Q 037717 246 --------------------AIVTALQIH----VNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYAN 301 (582)
Q Consensus 246 --------------------~~~~~~~i~----~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~ 301 (582)
.+..+..+. ...+++++|||+++++.++.+.+.|.. .++.+..+||.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~---------~~~~~~~~~g~ 398 (773)
T PRK13766 328 EDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK---------EGIKAVRFVGQ 398 (773)
T ss_pred hCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh---------CCCceEEEEcc
Confidence 000001111 114568899999999999999999965 34455566664
Q ss_pred --------CCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHH
Q 037717 302 --------LPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQR 373 (582)
Q Consensus 302 --------l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR 373 (582)
+++.+|.++++.|+.|..+|+|||++++.|+|+|++++|| .||+ +.+...+.||
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI--------~yd~----------~~s~~r~iQR 460 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI--------FYEP----------VPSEIRSIQR 460 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE--------EeCC----------CCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 6665 3456679999
Q ss_pred hcCCCCCCCCeEEEeeChhhh
Q 037717 374 TGLSERTGPGKCFRLYTLHNY 394 (582)
Q Consensus 374 ~GRaGR~~~G~~~~L~~~~~~ 394 (582)
+||+||.++|.+|.|+++...
T Consensus 461 ~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 461 KGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred hcccCcCCCCEEEEEEeCCCh
Confidence 999999999999999986543
No 76
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.5e-25 Score=223.90 Aligned_cols=303 Identities=22% Similarity=0.276 Sum_probs=212.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhh--hcc-----------------chHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQY--LYE-----------------PRWVAAMSV 112 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~--ll~-----------------P~r~~a~~~ 112 (582)
++.+-+.-..-|.. .|...|..+.++++++.-|.|||||| +++|.. ++. |+|.+|.|+
T Consensus 31 lkAi~~lG~ekpTl-IQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQv 109 (569)
T KOG0346|consen 31 LKAITKLGWEKPTL-IQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQV 109 (569)
T ss_pred HHHHHHhCcCCcch-hhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHH
Confidence 33444444555554 45566677778889999999999999 667754 332 999999999
Q ss_pred HHHHHHHh---CCccCcEEeEEEeec-----ccCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeeccc---CCCcc
Q 037717 113 AARVSQEM---GVKLGHEVGYSIRFE-----DCTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQ---ERTLS 179 (582)
Q Consensus 113 a~~va~~~---~~~~g~~vgy~v~~~-----~~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~H---eR~~~ 179 (582)
..-+.+.. ...+. .+......+ ....+..+|+++||+.+++++..+.. +..++++|+|||+ ..|..
T Consensus 110 y~viekL~~~c~k~lr-~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYe 188 (569)
T KOG0346|consen 110 YKVIEKLVEYCSKDLR-AINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYE 188 (569)
T ss_pred HHHHHHHHHHHHHhhh-hhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccH
Confidence 76554431 11110 000000000 11235689999999999999998884 8899999999997 22322
Q ss_pred hhHHHHHHHHHH-hhCCCceEEEecccC--ChHHHHhhhCCCCEEee-C-Cc---eeceeEEEecCCchhHHHHHHHHHH
Q 037717 180 TDNLFGLLKDLI-NYRPDLKLLISSATL--DAEKFSDYFGSAPIFKI-P-GR---RYPVELFYTKAPEVDYIEAAIVTAL 251 (582)
Q Consensus 180 ~d~ll~~lk~~~-~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i-~-gr---~~~v~~~~~~~~~~~~~~~~~~~~~ 251 (582)
-| ++.+. ...+..|.++||||+ |+..+.+.|-..|++.- . +. .-.+..++....+.|.+-- +-.++
T Consensus 189 ed-----lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll-lyall 262 (569)
T KOG0346|consen 189 ED-----LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL-LYALL 262 (569)
T ss_pred HH-----HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH-HHHHH
Confidence 22 22222 244678999999999 89999999888887532 1 11 1224455554444333211 22223
Q ss_pred HHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC-----
Q 037717 252 QIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATN----- 326 (582)
Q Consensus 252 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~----- 326 (582)
.+.. -.|++|+|+++.+.+..+.-.|++ -++..+.+.|.||..-|--|++.|..|...+|+||+
T Consensus 263 KL~L--I~gKsliFVNtIdr~YrLkLfLeq---------FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~ 331 (569)
T KOG0346|consen 263 KLRL--IRGKSLIFVNTIDRCYRLKLFLEQ---------FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADG 331 (569)
T ss_pred HHHH--hcCceEEEEechhhhHHHHHHHHH---------hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccch
Confidence 3222 258999999999999999888877 367788999999999999999999999999999999
Q ss_pred ------------------------------CCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcC
Q 037717 327 ------------------------------IAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGL 376 (582)
Q Consensus 327 ------------------------------iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GR 376 (582)
=..+|||+..|..|||+.+ |-+..+|+||+||
T Consensus 332 ~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------------------P~t~~sYIHRvGR 393 (569)
T KOG0346|consen 332 DKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------------------PETVTSYIHRVGR 393 (569)
T ss_pred hhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC------------------CCchHHHHHhccc
Confidence 1357899999999996554 4566789999999
Q ss_pred CCCCCC-CeEEEeeChhh
Q 037717 377 SERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 377 aGR~~~-G~~~~L~~~~~ 393 (582)
++|.+. |....+..+.+
T Consensus 394 TaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 394 TARGNNKGTALSFVSPKE 411 (569)
T ss_pred cccCCCCCceEEEecchH
Confidence 999985 99888877543
No 77
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.93 E-value=3.4e-25 Score=231.37 Aligned_cols=308 Identities=15% Similarity=0.206 Sum_probs=224.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHh
Q 037717 56 MLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEM 120 (582)
Q Consensus 56 ~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~ 120 (582)
.|.+.-..+|. +.|..+|.++..+-++||.+..|+|||.....+.++ |+|.+|+|+..-+....
T Consensus 39 glrrn~f~~pt-kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~ 117 (980)
T KOG4284|consen 39 GLRRNAFALPT-KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVA 117 (980)
T ss_pred HHHhhcccCCC-chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhc
Confidence 34433455665 456777888888888999999999999554433333 99999999976655432
Q ss_pred CCccCcEEeEEE-----eecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhC
Q 037717 121 GVKLGHEVGYSI-----RFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYR 194 (582)
Q Consensus 121 ~~~~g~~vgy~v-----~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~ 194 (582)
-..-|..+..-+ ..+...-..++|+++|||++++....+.. .+.++++|+|||+ .-+++..+-.-+..++..-
T Consensus 118 ~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~sl 196 (980)
T KOG4284|consen 118 PSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSL 196 (980)
T ss_pred ccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhc
Confidence 211232222222 22223345789999999999998876665 8999999999999 4445455555555555444
Q ss_pred C-CceEEEecccC--C-hHHHHhhhCCCCEEeeCCc---eeceeEEEecCCch----hHHHHHHHHHHHHHhcCCCCCEE
Q 037717 195 P-DLKLLISSATL--D-AEKFSDYFGSAPIFKIPGR---RYPVELFYTKAPEV----DYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 195 ~-~~kii~~SAT~--~-~~~~~~~f~~~~v~~i~gr---~~~v~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
| ..|++.+|||- | .+.++.|+.++-.+....+ .+-++.+|...+.. ..+...+..+-+++..-|-.+.|
T Consensus 197 P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAl 276 (980)
T KOG4284|consen 197 PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQAL 276 (980)
T ss_pred chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHH
Confidence 4 46899999999 3 3557788876655555443 23344444333222 23344455555666666668899
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||.....++-++..|.. .++.+..+-|.|++.+|..+++..+.-..+|+|||+..++|||-|++..|||.
T Consensus 277 VF~~~~sra~~~a~~L~s---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 277 VFCDQISRAEPIATHLKS---------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred hhhhhhhhhhHHHHHhhc---------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEec
Confidence 999999999999999977 68889999999999999999999999999999999999999999999999943
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLH 392 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~ 392 (582)
| .|..-..|.||+|||||.|. |..+.+.-..
T Consensus 348 --------D----------~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 348 --------D----------APADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred --------C----------CCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 2 34555679999999999998 9988877654
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.92 E-value=3e-24 Score=251.39 Aligned_cols=270 Identities=18% Similarity=0.202 Sum_probs=174.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch-Hhhh--hc---------cchHHHHHHHHHHHHHHhCCcc
Q 037717 57 LQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ-IPQY--LY---------EPRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 57 ~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~-ip~~--ll---------~P~r~~a~~~a~~va~~~~~~~ 124 (582)
+.+.......+++|..++..+..+++++++||||||||+. +|.. +. -|+|.+|.|++.++... +...
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l-~~~~ 150 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF-GEKV 150 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH-hhhc
Confidence 4444445678899999999999999999999999999953 2221 11 19999999998887654 3333
Q ss_pred CcEEeEEEeecc-----------c-CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccC-----CC---------c
Q 037717 125 GHEVGYSIRFED-----------C-TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQE-----RT---------L 178 (582)
Q Consensus 125 g~~vgy~v~~~~-----------~-~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~He-----R~---------~ 178 (582)
+..+........ . .....+|+|+|||.|.+.+. .-....+++|||||||. |+ .
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 333221111110 0 12357999999999998875 22256699999999992 11 1
Q ss_pred chhH---HHHHHHH-------------HHh-----hCCCceEEEecccCChHHHH-hhhCCCCEEeeCCc---eeceeEE
Q 037717 179 STDN---LFGLLKD-------------LIN-----YRPDLKLLISSATLDAEKFS-DYFGSAPIFKIPGR---RYPVELF 233 (582)
Q Consensus 179 ~~d~---ll~~lk~-------------~~~-----~~~~~kii~~SAT~~~~~~~-~~f~~~~v~~i~gr---~~~v~~~ 233 (582)
..+. ++..++. +.. ...+.+++++|||+++.... .+|...--+.+... ..++...
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~ 309 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDS 309 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEE
Confidence 1111 1111110 000 01157899999999654222 22322111332221 1234444
Q ss_pred EecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH---HHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHh
Q 037717 234 YTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDE---IERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKI 310 (582)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~---i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 310 (582)
|...+ +... .+ ..+.... +..+||||++++. ++.+++.|.. .++.+..+||+| + +.
T Consensus 310 yi~~~--~k~~-~L---~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~---------~gi~v~~~hg~l----~-~~ 368 (1176)
T PRK09401 310 YIVDE--DSVE-KL---VELVKRL-GDGGLIFVPSDKGKEYAEELAEYLED---------LGINAELAISGF----E-RK 368 (1176)
T ss_pred EEEcc--cHHH-HH---HHHHHhc-CCCEEEEEecccChHHHHHHHHHHHH---------CCCcEEEEeCcH----H-HH
Confidence 54332 1111 12 2222222 3579999999777 9999999987 478899999999 2 23
Q ss_pred cCCCCCCCcEEEEe----CCCCccccccCC-eeEEEeCCcccce
Q 037717 311 FEPTPERARKVVLA----TNIAETSLTIDG-IKYVIHPGFAKVK 349 (582)
Q Consensus 311 ~~~~~~g~~kViva----T~iae~gidIp~-v~~VID~g~~k~~ 349 (582)
++.|++|+.+|+|| ||++++|||+|+ |+|||++|+++.+
T Consensus 369 l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 369 FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 49999999999999 799999999999 8999999998843
No 79
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4e-24 Score=213.25 Aligned_cols=309 Identities=16% Similarity=0.255 Sum_probs=224.2
Q ss_pred ccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHH
Q 037717 50 VKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAA 114 (582)
Q Consensus 50 ~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~ 114 (582)
.++-+..+...-.+-|-..+|..|+..+. +.++++.+++|+|||...-..++. |+|++|.++.
T Consensus 34 ~e~LLrgiy~yGFekPSaIQqraI~p~i~-G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~- 111 (397)
T KOG0327|consen 34 KESLLRGIYAYGFEKPSAIQQRAILPCIK-GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQ- 111 (397)
T ss_pred CHHHHhHHHhhccCCchHHHhcccccccc-CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHH-
Confidence 34667777778888888888877777665 466899999999999332222221 9999999998
Q ss_pred HHHHHhCCccC----cEEeEEEee-cc--cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcc--hhHHH
Q 037717 115 RVSQEMGVKLG----HEVGYSIRF-ED--CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLS--TDNLF 184 (582)
Q Consensus 115 ~va~~~~~~~g----~~vgy~v~~-~~--~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~--~d~ll 184 (582)
.+....|...+ ..+|..... +. ......+|++.|||+.+.++..... ...+..+|+||++|+-.. -|.+.
T Consensus 112 ~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~ 191 (397)
T KOG0327|consen 112 KVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIY 191 (397)
T ss_pred HHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHH
Confidence 44444443322 222322111 11 1233579999999999999977755 677999999999954322 23333
Q ss_pred HHHHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCEEeeCCce----eceeEEEecCCchhHHHHHHHHHHHHHhcCC
Q 037717 185 GLLKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPIFKIPGRR----YPVELFYTKAPEVDYIEAAIVTALQIHVNEP 258 (582)
Q Consensus 185 ~~lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~----~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 258 (582)
.+.+ ..+++.|++++|||+ +....++-|...|+...-.+. --++.+|....... .+.++..++. .
T Consensus 192 ~if~---~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~ 262 (397)
T KOG0327|consen 192 DIFQ---ELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--R 262 (397)
T ss_pred HHHH---HcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--h
Confidence 3333 356789999999999 667778877777764432221 11223333222222 4455556655 4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCee
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIK 338 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~ 338 (582)
..+.+|||+|++.+..+...|.. .++.+..+||.+.+.+|..+...|+.|..+|++.|+.+++|+|+-.+.
T Consensus 263 ~~q~~if~nt~r~v~~l~~~L~~---------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 263 VTQAVIFCNTRRKVDNLTDKLRA---------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred hhcceEEecchhhHHHHHHHHhh---------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 57899999999999999999965 578899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 339 YVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 339 ~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
.|| .||. |.-+.+|.+|+||+||.|. |....+.++.+...
T Consensus 334 lvi--------nydl----------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 334 LVV--------NYDL----------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred eee--------eecc----------ccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 999 5553 3456789999999999995 99999999876544
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.1e-23 Score=230.63 Aligned_cols=293 Identities=15% Similarity=0.153 Sum_probs=186.5
Q ss_pred CCCChHHHHHHHHHHhCC---CeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 63 TLPIYPFWEELLQAVSGY---PVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~---~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
...+++||.+.+.++..+ +..+|+.|||+|||.+.-.++.. |+..++.|....+.+-.....+ .++.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~-~I~~ 331 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDS-QICR 331 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-eEEE
Confidence 344789999999887643 36789999999999665444332 9999999998888765443322 2321
Q ss_pred EEeec-ccCCCCccEEEEChHHHHHHHHcC-------CCC--CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEE
Q 037717 131 SIRFE-DCTSDKTVLKYMTDCMLLREIVIE-------PSL--ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLL 200 (582)
Q Consensus 131 ~v~~~-~~~~~~t~I~~~T~g~Ll~~l~~~-------~~l--~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii 200 (582)
-.... ........|+++|..++....... ..+ ..+++||+|||| +... ...+.++..-.....+
T Consensus 332 ~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lpA-----~~fr~il~~l~a~~RL 405 (732)
T TIGR00603 332 FTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVPA-----AMFRRVLTIVQAHCKL 405 (732)
T ss_pred EecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-cccH-----HHHHHHHHhcCcCcEE
Confidence 11111 111224689999999885422111 112 468999999999 3322 1233333322344679
Q ss_pred EecccC---Ch--HHHHhhhCCCCEEee-------CCceeceeE--EEecCCch---hHHH-----------------HH
Q 037717 201 ISSATL---DA--EKFSDYFGSAPIFKI-------PGRRYPVEL--FYTKAPEV---DYIE-----------------AA 246 (582)
Q Consensus 201 ~~SAT~---~~--~~~~~~f~~~~v~~i-------~gr~~~v~~--~~~~~~~~---~~~~-----------------~~ 246 (582)
++|||+ |- ..+..+|| .+++.. .|..-|++. .+.+.+.. .|+. .+
T Consensus 406 GLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~ 484 (732)
T TIGR00603 406 GLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRA 484 (732)
T ss_pred EEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHH
Confidence 999999 21 22333444 334333 233333322 12222211 1111 01
Q ss_pred HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC-CcEEEEeC
Q 037717 247 IVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-ARKVVLAT 325 (582)
Q Consensus 247 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kVivaT 325 (582)
+..++..|. ..+.++|||+.....++.+++.|. +..+||++++.+|+++++.|+.| ..++||+|
T Consensus 485 ~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 485 CQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred HHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 111233332 356799999999888887776551 23479999999999999999875 78999999
Q ss_pred CCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCC-eE-------EEeeChhhhh
Q 037717 326 NIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPG-KC-------FRLYTLHNYH 395 (582)
Q Consensus 326 ~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G-~~-------~~L~~~~~~~ 395 (582)
+++.+|||+|++++|| .+++. +-|+.+|.||.||++|.++| .+ |.|.++...+
T Consensus 550 kVgdeGIDlP~a~vvI--------~~s~~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 550 KVGDTSIDLPEANVLI--------QISSH---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred cccccccCCCCCCEEE--------EeCCC---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999999999999 33322 24788999999999999974 44 7787776543
No 81
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=6.4e-23 Score=232.80 Aligned_cols=286 Identities=19% Similarity=0.174 Sum_probs=174.8
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc---c-----------chHHHHHHHHHHHHHHhC-----CccC
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY---E-----------PRWVAAMSVAARVSQEMG-----VKLG 125 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll---~-----------P~r~~a~~~a~~va~~~~-----~~~g 125 (582)
..+++|..+.+.......+||.||||||||..+-.+.. . |++..+.++..|+.+... ..++
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~ 365 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLI 365 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 45777887755444578899999999999954332211 1 999999999999875221 1111
Q ss_pred cEEeEEE---eecc--------------------------cCCCCccEEEEChHHHHHHHHcCCC--CCC----CCceEe
Q 037717 126 HEVGYSI---RFED--------------------------CTSDKTVLKYMTDCMLLREIVIEPS--LES----YSVLIV 170 (582)
Q Consensus 126 ~~vgy~v---~~~~--------------------------~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~----~~~vVi 170 (582)
...|... .+.. +..--..++|+|...++...+..+. +.. -++|||
T Consensus 366 L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIi 445 (878)
T PRK09694 366 LAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIV 445 (878)
T ss_pred eecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEE
Confidence 1112110 0000 0001268999999888865554322 222 369999
Q ss_pred ecccCCCcchhHHHH-HHHHHHhhCCCceEEEecccCChHHHHhh---hCCC---------CEEeeCC----ce------
Q 037717 171 DEAQERTLSTDNLFG-LLKDLINYRPDLKLLISSATLDAEKFSDY---FGSA---------PIFKIPG----RR------ 227 (582)
Q Consensus 171 DE~HeR~~~~d~ll~-~lk~~~~~~~~~kii~~SAT~~~~~~~~~---f~~~---------~v~~i~g----r~------ 227 (582)
||+|--+..+.-++. +++.+.. ...++|+||||+....-.++ ++.. |.+...+ ..
T Consensus 446 DEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 446 DEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred echhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 999977666554433 4443322 45789999999954333222 2221 1111110 00
Q ss_pred -------eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecC
Q 037717 228 -------YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYA 300 (582)
Q Consensus 228 -------~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 300 (582)
..+.+..............+..+.... ..++++|||+||.+.++.+++.|.+... .+..+..+||
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llHs 595 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFHA 595 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEeC
Confidence 011111110000001112222232222 3468899999999999999999986321 2457889999
Q ss_pred CCCHHHHH----HhcCCC-CCCC---cEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHH
Q 037717 301 NLPTELQA----KIFEPT-PERA---RKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQ 372 (582)
Q Consensus 301 ~l~~~~r~----~v~~~~-~~g~---~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Q 372 (582)
++++.+|+ ++++.| ++|+ .+|||||+++|.||||+ ++++|. . ..+..+++|
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlIt------------------d--laPidsLiQ 654 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLIT------------------Q--LCPVDLLFQ 654 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEE------------------C--CCCHHHHHH
Confidence 99999994 456666 5665 47999999999999995 788881 1 134578999
Q ss_pred HhcCCCCCC
Q 037717 373 RTGLSERTG 381 (582)
Q Consensus 373 R~GRaGR~~ 381 (582)
|+||+||.+
T Consensus 655 RaGR~~R~~ 663 (878)
T PRK09694 655 RLGRLHRHH 663 (878)
T ss_pred HHhccCCCC
Confidence 999999986
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=4e-23 Score=246.84 Aligned_cols=313 Identities=14% Similarity=0.109 Sum_probs=196.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhc--c--------chHHHHHHHHHHHHHHhCC
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLY--E--------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll--~--------P~r~~a~~~a~~va~~~~~ 122 (582)
.+..+.-.....++.|.+++..+..+++++++||||||||+ +++...+ . |+|.++.|++..+.... .
T Consensus 69 ~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~-~ 147 (1638)
T PRK14701 69 EEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFC-E 147 (1638)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHH-h
Confidence 33333323446888999999999999999999999999996 2222222 1 99999999988776532 2
Q ss_pred cc--CcEEeEEEeecc----------cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCC---Ccc-------h
Q 037717 123 KL--GHEVGYSIRFED----------CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQER---TLS-------T 180 (582)
Q Consensus 123 ~~--g~~vgy~v~~~~----------~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR---~~~-------~ 180 (582)
.. +..+.+-...-+ ......+|+|+|||.|.+.+.... ..++++|||||||.- +-+ .
T Consensus 148 ~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~ll 226 (1638)
T PRK14701 148 KANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLL 226 (1638)
T ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcC
Confidence 22 222222111111 012347999999999987664322 267999999999932 111 1
Q ss_pred hHHHHHHH-------------------------HHHhh-CCCce-EEEecccCCh-HHHHhhhCCCCEEeeCCce---ec
Q 037717 181 DNLFGLLK-------------------------DLINY-RPDLK-LLISSATLDA-EKFSDYFGSAPIFKIPGRR---YP 229 (582)
Q Consensus 181 d~ll~~lk-------------------------~~~~~-~~~~k-ii~~SAT~~~-~~~~~~f~~~~v~~i~gr~---~~ 229 (582)
++.-.+.. ..+.. .+..+ ++++|||+.+ ....++|...-.+.+.... ..
T Consensus 227 GF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~ 306 (1638)
T PRK14701 227 GFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRN 306 (1638)
T ss_pred CChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCC
Confidence 22111111 11111 12334 5778999964 3455666543334443322 22
Q ss_pred eeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH---HHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHH
Q 037717 230 VELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEI---ERAEEILKQRTRGLGTKIAELIICPIYANLPTEL 306 (582)
Q Consensus 230 v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i---~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 306 (582)
+...|......+ . . .++.+.... +...||||++++.+ +.+++.|.+ .++.+..+||+
T Consensus 307 i~~~yi~~~~~~-k-~---~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~---------~Gi~a~~~h~~----- 366 (1638)
T PRK14701 307 IVDVYLNPEKII-K-E---HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLE---------DGFKIELVSAK----- 366 (1638)
T ss_pred cEEEEEECCHHH-H-H---HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHH---------CCCeEEEecch-----
Confidence 344444322221 1 1 222332222 45799999998865 788888887 58899999996
Q ss_pred HHHhcCCCCCCCcEEEEeC----CCCccccccCC-eeEEEeCCccccee----ecCCCCcccccccccCHHhHHHHhcCC
Q 037717 307 QAKIFEPTPERARKVVLAT----NIAETSLTIDG-IKYVIHPGFAKVKS----YNPKTGMESLLVNPISKASANQRTGLS 377 (582)
Q Consensus 307 r~~v~~~~~~g~~kVivaT----~iae~gidIp~-v~~VID~g~~k~~~----yd~~~~~~~l~~~~~S~~~~~QR~GRa 377 (582)
|..+++.|++|+.+|+||| +++++|||+|+ |+|||+.|++|... |.+.... .+. .....++.|||
T Consensus 367 R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a 440 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEE 440 (1638)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhh
Confidence 8889999999999999999 59999999999 99999999988331 2221110 011 23456788999
Q ss_pred CCCC-CCeEEEeeChhhhh
Q 037717 378 ERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 378 GR~~-~G~~~~L~~~~~~~ 395 (582)
||.| ++.|+..+..+.+.
T Consensus 441 ~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 441 LKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred cccCCcchhHHHhHHHHHH
Confidence 9998 47776555555543
No 83
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=2.4e-23 Score=235.65 Aligned_cols=302 Identities=19% Similarity=0.234 Sum_probs=207.4
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCCccCcEEeEEEe--
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR-- 133 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~-- 133 (582)
-..+.|.+++.++..++.++|..|||.||| +|+|.+++. |...+-......+. ..+......-+-+..
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~q~~~~ 342 (941)
T KOG0351|consen 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLS-KKGIPACFLSSIQTAAE 342 (941)
T ss_pred cCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhh-hcCcceeeccccccHHH
Confidence 356778899999999999999999999999 899999887 76665544433331 111110000000000
Q ss_pred ----ecc--cCCCCccEEEEChHHHHHHHHc---CCCCCC---CCceEeeccc---CCCcchhHHHHHHHHHHhhCCCce
Q 037717 134 ----FED--CTSDKTVLKYMTDCMLLREIVI---EPSLES---YSVLIVDEAQ---ERTLSTDNLFGLLKDLINYRPDLK 198 (582)
Q Consensus 134 ----~~~--~~~~~t~I~~~T~g~Ll~~l~~---~~~l~~---~~~vViDE~H---eR~~~~d~ll~~lk~~~~~~~~~k 198 (582)
+.. ......+|+|+||+.+...-.- ...|.. +..+|||||| +.|.+---....+..+..+.+...
T Consensus 343 ~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP 422 (941)
T KOG0351|consen 343 RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVP 422 (941)
T ss_pred HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCC
Confidence 000 1123679999999877542211 111333 8899999999 455443334445555555778899
Q ss_pred EEEecccCCh---HHHHhhhC--CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Q 037717 199 LLISSATLDA---EKFSDYFG--SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIE 273 (582)
Q Consensus 199 ii~~SAT~~~---~~~~~~f~--~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 273 (582)
+|.+|||... +++.+-++ +++++.-. ..+-..+|...+..+ .+........+....+.+.+||+|.++.+++
T Consensus 423 ~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 423 FIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred eEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHH
Confidence 9999999944 34444443 23332211 111122222222111 1222223344445567789999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecC
Q 037717 274 RAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNP 353 (582)
Q Consensus 274 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~ 353 (582)
.++..|... ++....+|+||++.+|+.|-..|-.++.+||+||-...+|||.|||+.||.+++
T Consensus 500 ~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l-------- 562 (941)
T KOG0351|consen 500 QVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL-------- 562 (941)
T ss_pred HHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC--------
Confidence 999999883 567889999999999999999999999999999999999999999999996665
Q ss_pred CCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhhh
Q 037717 354 KTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHRI 397 (582)
Q Consensus 354 ~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~~ 397 (582)
|-|-..|.|-+|||||.| +..|..+|+-.++..+
T Consensus 563 ----------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 563 ----------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred ----------chhHHHHHHhccccCcCCCcceeEEecchhHHHHH
Confidence 445668999999999999 4999999998877553
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.90 E-value=4.9e-22 Score=219.93 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=91.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC-
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID- 335 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp- 335 (582)
..+.++||||++.+.++.+++.|.+ .++....+||.+.++++..+...+.+| +|+||||+|++|+|||
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~---------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l 490 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLR---------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKL 490 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHH---------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCC
Confidence 3467899999999999999999987 467788999999999999998888877 7999999999999999
Q ss_pred --------CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhh
Q 037717 336 --------GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHN 393 (582)
Q Consensus 336 --------~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~ 393 (582)
++.+|| .|+++. .+. ..||+||+||.| ||.++.+.+.++
T Consensus 491 ~~~v~~~GGL~vIi--------t~~~ps----------~ri-d~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 491 GKGVAELGGLAVIG--------TERMEN----------SRV-DLQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred CccccccCCeEEEE--------ecCCCC----------cHH-HHHhhhcccCCCCceeEEEEEccch
Confidence 999999 455432 233 499999999999 599998888643
No 85
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=4e-23 Score=207.14 Aligned_cols=295 Identities=18% Similarity=0.209 Sum_probs=185.8
Q ss_pred HHH-HHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCCcc---CcEEeEEEe---
Q 037717 70 WEE-LLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGVKL---GHEVGYSIR--- 133 (582)
Q Consensus 70 ~~~-il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~---g~~vgy~v~--- 133 (582)
|++ +...+..+++|.|+.|||+||| +|+|.++.+ |.-.+-......+.. +.++. .....-.-|
T Consensus 25 QE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt~ER~ri 103 (641)
T KOG0352|consen 25 QEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLSTVERSRI 103 (641)
T ss_pred HHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhHHHHHHH
Confidence 444 4456788899999999999999 899988877 543333222221111 01000 000000000
Q ss_pred -e-cccCCCCccEEEEChHHHHHHHHcCC-----CCCCCCceEeeccc---C--CCcchhH-HHHHHHHHHhhCCCceEE
Q 037717 134 -F-EDCTSDKTVLKYMTDCMLLREIVIEP-----SLESYSVLIVDEAQ---E--RTLSTDN-LFGLLKDLINYRPDLKLL 200 (582)
Q Consensus 134 -~-~~~~~~~t~I~~~T~g~Ll~~l~~~~-----~l~~~~~vViDE~H---e--R~~~~d~-ll~~lk~~~~~~~~~kii 200 (582)
. -....++++++|.||++.-.....+- .-.-++++|+|||| . .+..-|. -|+-|+. ..++..-|
T Consensus 104 ~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS---~~~~vpwv 180 (641)
T KOG0352|consen 104 MGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS---VCPGVPWV 180 (641)
T ss_pred HHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh---hCCCCceE
Confidence 0 01234678999999987532221111 12346899999999 2 2233333 2444443 56899999
Q ss_pred EecccCChHHHHhhhC----CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHH----------hcCC---CCCEE
Q 037717 201 ISSATLDAEKFSDYFG----SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIH----------VNEP---TGDIL 263 (582)
Q Consensus 201 ~~SAT~~~~~~~~~f~----~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~----------~~~~---~g~iL 263 (582)
.++||.+++.-.+.|. ..||-....-.|.-..+|...- .+.+......+.+.. ...+ .|--|
T Consensus 181 ALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~-K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGI 259 (641)
T KOG0352|consen 181 ALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM-KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGI 259 (641)
T ss_pred EeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH-HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceE
Confidence 9999997766555432 2232222222222222222100 011111111111110 0111 37789
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||.|++++|.++-.|.. .++....+|+||...||.+|.+.+.+|+..||+||+...+|+|-|+|++||
T Consensus 260 VYCRTR~~cEq~AI~l~~---------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi-- 328 (641)
T KOG0352|consen 260 VYCRTRNECEQVAIMLEI---------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI-- 328 (641)
T ss_pred EEeccHHHHHHHHHHhhh---------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE--
Confidence 999999999999988876 578899999999999999999999999999999999999999999999999
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
.||+. -+.+-|.|-.|||||.|. ..|=.-|++++-+.
T Consensus 329 ------HW~~~----------qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 329 ------HWSPS----------QNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ------ecCch----------hhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 55544 455679999999999996 66766677766543
No 86
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=220.99 Aligned_cols=313 Identities=16% Similarity=0.201 Sum_probs=204.8
Q ss_pred CCChHHHHHHH--HHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 64 LPIYPFWEELL--QAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 64 lPi~~~~~~il--~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
+-.|..|.+-+ ..+.++.++|...||+.|||......++. |.-..+..-...++. +...+|-.|
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G~~v 300 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccCCcc
Confidence 44666677665 45678999999999999999766655443 211111111111111 123333333
Q ss_pred -eEEEeecc-cCCCCccEEEEChHH---HHHHHHcCCCCCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhCCCce
Q 037717 129 -GYSIRFED-CTSDKTVLKYMTDCM---LLREIVIEPSLESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYRPDLK 198 (582)
Q Consensus 129 -gy~v~~~~-~~~~~t~I~~~T~g~---Ll~~l~~~~~l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~~~~k 198 (582)
+|.-++.. .......+.+||.++ |.+.+.....+..++.|||||.| +||...+.++..+...... ..++
T Consensus 301 e~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~-~~~~ 379 (1008)
T KOG0950|consen 301 EEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE-TSVQ 379 (1008)
T ss_pred hhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc-ccee
Confidence 34322221 122456899999864 56666666678999999999999 8999888888766554332 3488
Q ss_pred EEEecccC-ChHHHHhhhCCCCEEeeCCceeceeEEEecCCc---hhHHHHHHHHHHH----------------HH-hcC
Q 037717 199 LLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPE---VDYIEAAIVTALQ----------------IH-VNE 257 (582)
Q Consensus 199 ii~~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~---~~~~~~~~~~~~~----------------i~-~~~ 257 (582)
+|+||||+ |.+.+++||. +.+....-|+.|.+.+....+. .+ ....+..+-. .+ ..-
T Consensus 380 iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~ 457 (1008)
T KOG0950|consen 380 IIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETA 457 (1008)
T ss_pred EeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhh
Confidence 99999999 9999999996 4344333444444443322110 00 0011111110 00 011
Q ss_pred C-CCCEEEEcCCHHHHHHHHHHHHHhhhc----------------------cCCCCC-------CeEEEEecCCCCHHHH
Q 037717 258 P-TGDILVFLTGQDEIERAEEILKQRTRG----------------------LGTKIA-------ELIICPIYANLPTELQ 307 (582)
Q Consensus 258 ~-~g~iLVFl~~~~~i~~~~~~L~~~~~~----------------------~~~~~~-------~~~v~~lh~~l~~~~r 307 (582)
+ +.++|||||+++.++.++..+...... ....+. ..-+..+|+|++.++|
T Consensus 458 ~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 458 PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEER 537 (1008)
T ss_pred hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchH
Confidence 2 245999999999999999776543211 000000 1235566999999999
Q ss_pred HHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCe
Q 037717 308 AKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGK 384 (582)
Q Consensus 308 ~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~ 384 (582)
+.|+..|+.|...|++||++++.|++.|..+|+|-.-+ ......++.+|.||+|||||+| -|.
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~Gd 603 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGD 603 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcc
Confidence 99999999999999999999999999999999882211 2344578889999999999998 399
Q ss_pred EEEeeChhhh
Q 037717 385 CFRLYTLHNY 394 (582)
Q Consensus 385 ~~~L~~~~~~ 394 (582)
++.++.+.+-
T Consensus 604 siLI~k~~e~ 613 (1008)
T KOG0950|consen 604 SILIIKSSEK 613 (1008)
T ss_pred eEEEeeccch
Confidence 9999987664
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.9e-21 Score=190.92 Aligned_cols=296 Identities=18% Similarity=0.221 Sum_probs=199.6
Q ss_pred HHHHHHHhCCCeEEEECCCCCchhchHhh---hhcc---------chHHHHHHHHHHHHHHhC-CccCcEEeEEEeeccc
Q 037717 71 EELLQAVSGYPVLAIVGETGSGKTTQIPQ---YLYE---------PRWVAAMSVAARVSQEMG-VKLGHEVGYSIRFEDC 137 (582)
Q Consensus 71 ~~il~~i~~~~~viv~a~TGSGKTt~ip~---~ll~---------P~r~~a~~~a~~va~~~~-~~~g~~vgy~v~~~~~ 137 (582)
+.+++.+.+.+..+|.|-||||||-.+-+ ..++ ||--.+..++.|+.+.+. +.+.. ..+++.
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~-----Lyg~S~ 181 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL-----LYGDSD 181 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeee-----EecCCc
Confidence 45678889999999999999999944433 3333 998899999999998775 33221 122344
Q ss_pred CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHH-HHHHHhhCCCceEEEecccCChHHHHhhhC
Q 037717 138 TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGL-LKDLINYRPDLKLLISSATLDAEKFSDYFG 216 (582)
Q Consensus 138 ~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~-lk~~~~~~~~~kii~~SAT~~~~~~~~~f~ 216 (582)
..-.+.++++|...|++.- ..++++||||++-.-...|..|.. ++.. +.+.--+|.||||..-+.-.+-..
T Consensus 182 ~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~~ 253 (441)
T COG4098 182 SYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERKILK 253 (441)
T ss_pred hhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHHhhh
Confidence 4445899999999999865 457999999999776666665554 3332 234567899999994333333322
Q ss_pred -CCCEEeeCCce----eceeEEEecCCchhHHH-----HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhcc
Q 037717 217 -SAPIFKIPGRR----YPVELFYTKAPEVDYIE-----AAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGL 286 (582)
Q Consensus 217 -~~~v~~i~gr~----~~v~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~ 286 (582)
.-..+.+|.|. -|+..+....+-...+. ..+...++-+.. .+.++|||+|+.+-.+.++..|++..
T Consensus 254 g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~~--- 329 (441)
T COG4098 254 GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKKL--- 329 (441)
T ss_pred CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhhC---
Confidence 22345666553 23333322222222222 233333433332 35789999999999999999997643
Q ss_pred CCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccC
Q 037717 287 GTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPIS 366 (582)
Q Consensus 287 ~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S 366 (582)
+...+..+||.- ..|.+..+.|++|+.+++++|.|+|+|+|+|+|+++| .+.. ..-.|
T Consensus 330 ----~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V---------lgae-------h~vfT 387 (441)
T COG4098 330 ----PKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV---------LGAE-------HRVFT 387 (441)
T ss_pred ----CccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE---------ecCC-------ccccc
Confidence 455677888863 4577777889999999999999999999999999887 1111 12367
Q ss_pred HHhHHHHhcCCCCCC--C-Ce-EEEeeChhhhhhhhh-hhhHhhhh
Q 037717 367 KASANQRTGLSERTG--P-GK-CFRLYTLHNYHRIWM-TILCQKYN 407 (582)
Q Consensus 367 ~~~~~QR~GRaGR~~--~-G~-~~~L~~~~~~~~~~~-~pei~r~~ 407 (582)
.++.+|.+||+||.- | |. +|-=|... ..+.. .-||+++|
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~G~s--kaM~~A~keIk~MN 431 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHYGKS--KAMKQARKEIKEMN 431 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEeccch--HHHHHHHHHHHHHH
Confidence 899999999999975 3 65 34334333 23333 46777666
No 88
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=8.9e-22 Score=231.08 Aligned_cols=272 Identities=19% Similarity=0.228 Sum_probs=173.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch-Hhhh--hcc---------chHHHHHHHHHHHHHHhCC
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ-IPQY--LYE---------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~-ip~~--ll~---------P~r~~a~~~a~~va~~~~~ 122 (582)
.+..........++.|...+..+..+++++++||||||||+. +|.. +.. |+|.+|.|++..+.....
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~- 146 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAE- 146 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHH-
Confidence 333344455678899999999999999999999999999963 3322 111 999999999887765432
Q ss_pred ccCc---EEeEEEee---cc-------cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccC-----CC-------
Q 037717 123 KLGH---EVGYSIRF---ED-------CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQE-----RT------- 177 (582)
Q Consensus 123 ~~g~---~vgy~v~~---~~-------~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~He-----R~------- 177 (582)
..|. .+|+-... .. ....+.+|+++||++|.+.+..-. .+++++||||||. |+
T Consensus 147 ~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~~~k~vd~il~l 224 (1171)
T TIGR01054 147 KAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLKASKNVDKLLKL 224 (1171)
T ss_pred hcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhhccccHHHHHHH
Confidence 1121 12211111 00 012347999999999988765422 2899999999992 11
Q ss_pred --cchhH---HHHHHH------------H---HHh-hCCCc--eEEEecccCChHHHH-hhhCCCCEEeeCCc---eece
Q 037717 178 --LSTDN---LFGLLK------------D---LIN-YRPDL--KLLISSATLDAEKFS-DYFGSAPIFKIPGR---RYPV 230 (582)
Q Consensus 178 --~~~d~---ll~~lk------------~---~~~-~~~~~--kii~~SAT~~~~~~~-~~f~~~~v~~i~gr---~~~v 230 (582)
..-+. ++..++ . .++ ..++. .++++|||..+.... .+|...-.+.+... ...+
T Consensus 225 lGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I 304 (1171)
T TIGR01054 225 LGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNV 304 (1171)
T ss_pred cCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccce
Confidence 11111 111111 0 011 11223 367789995322222 23432222333222 1234
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH---HHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHH
Q 037717 231 ELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQ---DEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQ 307 (582)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~---~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 307 (582)
...|..... .. ..+ ..+.... +...|||++++ +.++.+++.|.+ .++.+..+||++++
T Consensus 305 ~~~~~~~~~--~~-~~L---~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~---------~g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 305 VDVYVEDED--LK-ETL---LEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLEN---------HGVKAVAYHATKPK--- 365 (1171)
T ss_pred EEEEEeccc--HH-HHH---HHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHh---------CCceEEEEeCCCCH---
Confidence 445543222 11 112 2222222 35799999998 999999999987 47889999999973
Q ss_pred HHhcCCCCCCCcEEEEe----CCCCccccccCC-eeEEEeCCcccce
Q 037717 308 AKIFEPTPERARKVVLA----TNIAETSLTIDG-IKYVIHPGFAKVK 349 (582)
Q Consensus 308 ~~v~~~~~~g~~kViva----T~iae~gidIp~-v~~VID~g~~k~~ 349 (582)
.+++.|++|+.+|+|| |+++++|||||+ |+|||++|+++.+
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 6889999999999999 599999999999 8999999999864
No 89
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.8e-22 Score=222.80 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=93.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCcccccc---
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTI--- 334 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidI--- 334 (582)
.+.++||||+|.+.++.+++.|.+ .++.+..+||.+.++++..+...+.+| +|+||||+|++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~---------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDE---------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHH---------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 468899999999999999999987 478889999999999998888888777 799999999999999
Q ss_pred CCee-----EEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 335 DGIK-----YVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 335 p~v~-----~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
|+|. +||++. .|.|...|.||+||+||.|. |.|..+++.++
T Consensus 496 ~~V~~~GGL~VI~~d------------------~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 496 EGVHELGGLAVIGTE------------------RMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cccccccCcEEEecc------------------CCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 7998 999433 35677789999999999994 99999888643
No 90
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.88 E-value=1.5e-21 Score=219.65 Aligned_cols=299 Identities=16% Similarity=0.210 Sum_probs=186.8
Q ss_pred CCCChHHHHHHHHHHhC---CCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 63 TLPIYPFWEELLQAVSG---YPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~---~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
...+.++|.++++.+.+ ++++++.|+||||||......+.+ |++.++.++.+++.+.++..+...
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 34578899999999987 478999999999999544333221 999999999999988776443222
Q ss_pred EeEEEeec------ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchh------H-HHHHHHHHHhhC
Q 037717 128 VGYSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTD------N-LFGLLKDLINYR 194 (582)
Q Consensus 128 vgy~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d------~-ll~~lk~~~~~~ 194 (582)
.|..-..+ .......+|+++|++.+. ..+.++++|||||+|+-+...+ . -+..++ ...
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r---a~~ 292 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR---AKL 292 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH---hhc
Confidence 22100000 112345799999998764 2378899999999995443221 1 111111 234
Q ss_pred CCceEEEecccCChHHHHhhhC-CCCEEeeCCce----eceeEEEecCCc--h----hHH-HHHHHHHHHHHhcCCCCCE
Q 037717 195 PDLKLLISSATLDAEKFSDYFG-SAPIFKIPGRR----YPVELFYTKAPE--V----DYI-EAAIVTALQIHVNEPTGDI 262 (582)
Q Consensus 195 ~~~kii~~SAT~~~~~~~~~f~-~~~v~~i~gr~----~~v~~~~~~~~~--~----~~~-~~~~~~~~~i~~~~~~g~i 262 (582)
.+.++|++|||+..+.+..... ....+..+.+. .|. +....... . ..+ ...+..+.+.. ..++++
T Consensus 293 ~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qv 369 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQV 369 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeE
Confidence 6889999999998887766432 22333343332 221 11111100 0 001 11111121111 234578
Q ss_pred EEEcCCHH------------------------------------------------------------HHHHHHHHHHHh
Q 037717 263 LVFLTGQD------------------------------------------------------------EIERAEEILKQR 282 (582)
Q Consensus 263 LVFl~~~~------------------------------------------------------------~i~~~~~~L~~~ 282 (582)
|||+|.+. .++.+++.|.+.
T Consensus 370 ll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~ 449 (679)
T PRK05580 370 LLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL 449 (679)
T ss_pred EEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh
Confidence 88887522 444555555443
Q ss_pred hhccCCCCCCeEEEEecCCCCH--HHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCC--cc
Q 037717 283 TRGLGTKIAELIICPIYANLPT--ELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTG--ME 358 (582)
Q Consensus 283 ~~~~~~~~~~~~v~~lh~~l~~--~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~--~~ 358 (582)
+ ++..+..+|+++++ ++++++++.|++|+..|||+|++++.|+|+|+|+.|+ .+|.... ..
T Consensus 450 f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~--------il~aD~~l~~p 514 (679)
T PRK05580 450 F-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVG--------VLDADLGLFSP 514 (679)
T ss_pred C-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEE--------EEcCchhccCC
Confidence 2 56778899999974 5788999999999999999999999999999999986 2222211 11
Q ss_pred cccccccCHHhHHHHhcCCCCCC-CCeEEEe
Q 037717 359 SLLVNPISKASANQRTGLSERTG-PGKCFRL 388 (582)
Q Consensus 359 ~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L 388 (582)
.+...--.-..+.|++|||||.+ +|.++..
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 11111122356999999999966 4888853
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=1.4e-21 Score=210.08 Aligned_cols=284 Identities=19% Similarity=0.209 Sum_probs=193.4
Q ss_pred hcCCCChHHHHHHHHHHhC----CCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 61 RKTLPIYPFWEELLQAVSG----YPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~----~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
......++||+++++++.. ++..+++.|||+|||.....++.. |++.++.|.+.+.....+.. ..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~--~~ 109 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLN--DE 109 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCc--cc
Confidence 4566689999999999988 889999999999999777666544 99999999988777766543 12
Q ss_pred EeEEEeecccCCCCccEEEEChHHHHHH-HHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCce-EEEeccc
Q 037717 128 VGYSIRFEDCTSDKTVLKYMTDCMLLRE-IVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLK-LLISSAT 205 (582)
Q Consensus 128 vgy~v~~~~~~~~~t~I~~~T~g~Ll~~-l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~k-ii~~SAT 205 (582)
+|.--.......+ ..|+|+|...+.+. .........+++||+||||.-+.... +.+........ ++++|||
T Consensus 110 ~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~------~~~~~~~~~~~~~LGLTAT 182 (442)
T COG1061 110 IGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY------RRILELLSAAYPRLGLTAT 182 (442)
T ss_pred cceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH------HHHHHhhhcccceeeeccC
Confidence 2221111111112 57999999999886 33333355799999999995444321 22222233445 9999999
Q ss_pred C---ChHH---HHhhhCCCCEEeeC-------CceeceeEEEecC-----CchhHHH-----------------------
Q 037717 206 L---DAEK---FSDYFGSAPIFKIP-------GRRYPVELFYTKA-----PEVDYIE----------------------- 244 (582)
Q Consensus 206 ~---~~~~---~~~~f~~~~v~~i~-------gr~~~v~~~~~~~-----~~~~~~~----------------------- 244 (582)
+ |... +..++| ..+..++ |..-|........ ....|..
T Consensus 183 p~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (442)
T COG1061 183 PEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARR 261 (442)
T ss_pred ceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 7 4223 333443 2233222 2233332221111 0000000
Q ss_pred ------HHHHHHHHHHhcC-CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC
Q 037717 245 ------AAIVTALQIHVNE-PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER 317 (582)
Q Consensus 245 ------~~~~~~~~i~~~~-~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g 317 (582)
..+..+..+.... .+.+++||+.....++.++..+.. ++. +..+.+..+.++|..+++.|+.|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~eR~~il~~fr~g 331 (442)
T COG1061 262 IAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEEREAILERFRTG 331 (442)
T ss_pred HhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHHHHHHHHHHHcC
Confidence 0011111111111 356899999999999999998865 344 77889999999999999999999
Q ss_pred CcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC
Q 037717 318 ARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP 382 (582)
Q Consensus 318 ~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 382 (582)
.+++|+++.++..|+|+|++.++| +....-|+..|.||+||.=|..+
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i------------------~~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLI------------------ILRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEE------------------EeCCCCcHHHHHHHhhhhccCCC
Confidence 999999999999999999999999 55667889999999999999544
No 92
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=2.5e-21 Score=213.05 Aligned_cols=119 Identities=24% Similarity=0.202 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEE
Q 037717 244 EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVL 323 (582)
Q Consensus 244 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViv 323 (582)
.+.+..+...| ..+.++||||++.+.++.+++.|.+ .++....+||. +.+|+..+..+..+.-.|+|
T Consensus 392 ~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~---------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 392 KAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKE---------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHH---------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEE
Confidence 33344444444 3478999999999999999999988 46778889998 78888888889999999999
Q ss_pred eCCCCccccccCC-------eeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 324 ATNIAETSLTIDG-------IKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 324 aT~iae~gidIp~-------v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
|||+|++|+||+. ..+||.+ ..|-|+..+.||.||+||.|. |.+..+.+.++
T Consensus 459 ATnmAgRGtDI~l~~V~~~GGl~VI~t------------------~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 459 ATNMAGRGTDIKLEEVKELGGLYVIGT------------------ERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EeccccCCcCCCccchhhcCCcEEEec------------------CCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9999999999998 4589933 346778889999999999995 99888877653
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.7e-21 Score=209.18 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=112.7
Q ss_pred eEEEecccC--ChHHHHhhhCCCCEEeeCCceeceeEE---EecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Q 037717 198 KLLISSATL--DAEKFSDYFGSAPIFKIPGRRYPVELF---YTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEI 272 (582)
Q Consensus 198 kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~~v~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 272 (582)
++-+||||. ..+.|.++++-.+ +.||...-..... +...+..+.....+..+...+ ..+.++||||++.+.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~v-v~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPV-VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCe-EEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 678888888 4456777776443 4444332111000 111122222333222222222 2356899999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC---Cee-----EEEeCC
Q 037717 273 ERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID---GIK-----YVIHPG 344 (582)
Q Consensus 273 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp---~v~-----~VID~g 344 (582)
+.+++.|.+ .++.+..+||.....++..+...+..| +|+||||+|++|+||+ +|. +||++.
T Consensus 487 e~L~~~L~~---------~gi~~~~Lhg~~~~rE~~ii~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 487 ERLSALLRE---------AGLPHQVLNAKQDAEEAAIVARAGQRG--RITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred HHHHHHHHH---------CCCCEEEeeCCcHHHHHHHHHHcCCCC--cEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 999999987 478899999997766666666555444 6999999999999999 776 999433
Q ss_pred cccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 345 FAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 345 ~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
.|.|...|.||+||+||.|. |.|+.+++.++
T Consensus 556 ------------------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 556 ------------------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ------------------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 35667789999999999994 99999998754
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=3.1e-21 Score=206.87 Aligned_cols=296 Identities=17% Similarity=0.170 Sum_probs=207.4
Q ss_pred HHHHhcCCC--ChHHHHHHHHHHhCC------CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHH
Q 037717 57 LQEERKTLP--IYPFWEELLQAVSGY------PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARV 116 (582)
Q Consensus 57 ~~~~r~~lP--i~~~~~~il~~i~~~------~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~v 116 (582)
+.+....|| +...|+..+..|... -+=++.|+-|||||..+...++. |+.++|.|-+..+
T Consensus 252 ~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESL 331 (677)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHH
Confidence 334445666 567777777777542 13478999999999666555443 9999999999888
Q ss_pred HHHhCCccCcEEeEEEeec----------ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHH
Q 037717 117 SQEMGVKLGHEVGYSIRFE----------DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~----------~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
++.+. ++|..|++-...- ...+...+|+++|...+- .+-.+.++.++|+||=|..|+..-..
T Consensus 332 ~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRFGV~QR~~--- 403 (677)
T COG1200 332 RKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRFGVHQRLA--- 403 (677)
T ss_pred HHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cceeecceeEEEEeccccccHHHHHH---
Confidence 77654 3344454432211 123456899999986432 22348999999999999888765221
Q ss_pred HHHHHhhCC-CceEEEecccCChHHHH-hhhCCCCEEe---eCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCC
Q 037717 187 LKDLINYRP-DLKLLISSATLDAEKFS-DYFGSAPIFK---IPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGD 261 (582)
Q Consensus 187 lk~~~~~~~-~~kii~~SAT~~~~~~~-~~f~~~~v~~---i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 261 (582)
+..... .+.+++||||+=+..++ ..||+-.+-. .|.-..|+.....+....+.+-..+ ..-. ..+.+
T Consensus 404 ---L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i---~~ei--~~GrQ 475 (677)
T COG1200 404 ---LREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERI---REEI--AKGRQ 475 (677)
T ss_pred ---HHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHH---HHHH--HcCCE
Confidence 122334 57899999999555555 4567654433 3444468888877755443332222 2211 24678
Q ss_pred EEEEcCCHHHHH--------HHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccc
Q 037717 262 ILVFLTGQDEIE--------RAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLT 333 (582)
Q Consensus 262 iLVFl~~~~~i~--------~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gid 333 (582)
+.|-||=.++.| ..++.|. ...+++.+.-+||.|++++++.|++.|++|+.+|+|||++.|.|||
T Consensus 476 aY~VcPLIeESE~l~l~~a~~~~~~L~-------~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVd 548 (677)
T COG1200 476 AYVVCPLIEESEKLELQAAEELYEELK-------SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVD 548 (677)
T ss_pred EEEEeccccccccchhhhHHHHHHHHH-------HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEeccc
Confidence 999998766555 3333333 2346788999999999999999999999999999999999999999
Q ss_pred cCCeeEEEeCCcccceeecCC-CCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPK-TGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~-~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
+|+.++.| .+|+. .| -++..|-.||+||-+. +.|+.+|....
T Consensus 549 VPnATvMV--------Ie~AERFG----------LaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 549 VPNATVMV--------IENAERFG----------LAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCCCeEEE--------Eechhhhh----------HHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999988 67763 34 3467999999999874 99999998654
No 95
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=9.8e-22 Score=197.29 Aligned_cols=309 Identities=19% Similarity=0.174 Sum_probs=203.9
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhc--------------cchHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLY--------------EPRWVAAMSVAAR 115 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll--------------~P~r~~a~~~a~~ 115 (582)
+.+..+.+.-...|...+|+. +..+.+++.++-.|-|||||| +.+|.+.. .|+|.+|.|.-.-
T Consensus 31 ~v~raI~kkg~~~ptpiqRKT-ipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkv 109 (529)
T KOG0337|consen 31 KVLRAIHKKGFNTPTPIQRKT-IPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKV 109 (529)
T ss_pred HHHHHHHHhhcCCCCchhccc-ccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHH
Confidence 556666666666676655554 466788888999999999999 56665421 1999999998664
Q ss_pred HHHHhCCccCc----EEeEEEeec--ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHH
Q 037717 116 VSQEMGVKLGH----EVGYSIRFE--DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLK 188 (582)
Q Consensus 116 va~~~~~~~g~----~vgy~v~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk 188 (582)
++ +++.-.+. .+|+.--.+ .....+.+|+++|||+++.....-.. |+.+.+||+||++ |-..+.+--.+-+
T Consensus 110 vk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e 187 (529)
T KOG0337|consen 110 VK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHE 187 (529)
T ss_pred HH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHH
Confidence 44 44432222 223211111 12356789999999999876654333 9999999999999 4444433333333
Q ss_pred HHHhhCCCceEEEecccCC--hHHHHhhhCCCCEE-e--eCCceec-eeEEEecCCchhHHHHHHHHHHHHHhcC-CCCC
Q 037717 189 DLINYRPDLKLLISSATLD--AEKFSDYFGSAPIF-K--IPGRRYP-VELFYTKAPEVDYIEAAIVTALQIHVNE-PTGD 261 (582)
Q Consensus 189 ~~~~~~~~~kii~~SAT~~--~~~~~~~f~~~~v~-~--i~gr~~~-v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~ 261 (582)
.+.+...+.+.++||||+. .-.|++-=...|+. . ++.+..+ ++..|...... .....++.+.... ...+
T Consensus 188 ~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a----~K~aaLl~il~~~~~~~~ 263 (529)
T KOG0337|consen 188 ILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA----EKEAALLSILGGRIKDKQ 263 (529)
T ss_pred HHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH----HHHHHHHHHHhccccccc
Confidence 3334455779999999992 22444321112221 1 1111111 11112211111 1122333333221 1357
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEE
Q 037717 262 ILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVI 341 (582)
Q Consensus 262 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VI 341 (582)
.+||++++..++.+...|.+ .++....+||+|.++-|..-+..|..++-.+++.|++|++|+|||...-||
T Consensus 264 t~vf~~tk~hve~~~~ll~~---------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 264 TIVFVATKHHVEYVRGLLRD---------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred eeEEecccchHHHHHHHHHh---------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 99999999999999999987 466777889999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
+..++- ...-+.||.||+.|.|. |..|.+....+.
T Consensus 335 nyd~p~------------------~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 335 NYDFPP------------------DDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred cccCCC------------------CCceEEEEecchhhccccceEEEEEecccc
Confidence 655522 11236789999998884 999998876543
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=2.4e-20 Score=217.56 Aligned_cols=301 Identities=19% Similarity=0.307 Sum_probs=190.1
Q ss_pred CChHHHHHHHHHHh-----CCCeEEEECCCCCchhchHhhhh---cc-----------chHHHHHHHHHHHHHHhCCccC
Q 037717 65 PIYPFWEELLQAVS-----GYPVLAIVGETGSGKTTQIPQYL---YE-----------PRWVAAMSVAARVSQEMGVKLG 125 (582)
Q Consensus 65 Pi~~~~~~il~~i~-----~~~~viv~a~TGSGKTt~ip~~l---l~-----------P~r~~a~~~a~~va~~~~~~~g 125 (582)
....||.+++.++. .++..+++.+||||||..+..++ +. ||+.++.|....+..- +...+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-ccccc
Confidence 45789999887764 34668889999999994433222 11 9999999988766543 11111
Q ss_pred cEE--eEEEe--ecccCCCCccEEEEChHHHHHHHHcC------CCCCCCCceEeecccCCCcchhH-------------
Q 037717 126 HEV--GYSIR--FEDCTSDKTVLKYMTDCMLLREIVIE------PSLESYSVLIVDEAQERTLSTDN------------- 182 (582)
Q Consensus 126 ~~v--gy~v~--~~~~~~~~t~I~~~T~g~Ll~~l~~~------~~l~~~~~vViDE~HeR~~~~d~------------- 182 (582)
..+ -|.+. .+......++|+|+|...|.+.+... +.+..+++||||||| |+...|-
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~~ 570 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQL 570 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchhh
Confidence 111 01111 11122346899999999988765421 247889999999999 7642111
Q ss_pred -HHHHHHHHHhhCCCceEEEecccCChHHHHhhhCCCCEEeeC-------Ccee----ceeEE---------EecC----
Q 037717 183 -LFGLLKDLINYRPDLKLLISSATLDAEKFSDYFGSAPIFKIP-------GRRY----PVELF---------YTKA---- 237 (582)
Q Consensus 183 -ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~~~~v~~i~-------gr~~----~v~~~---------~~~~---- 237 (582)
.....+.++.. .+..+|+||||+.. ...++||. |+.... |-.. |..+. |...
T Consensus 571 ~~~~~yr~iL~y-FdA~~IGLTATP~r-~t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 571 DYVSKYRRVLDY-FDAVKIGLTATPAL-HTTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hHHHHHHHHHhh-cCccEEEEecCCcc-chhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 13445565553 35688999999953 34567763 443211 2111 11111 0000
Q ss_pred --------------Cc-hhHHH--------------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCC
Q 037717 238 --------------PE-VDYIE--------------AAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGT 288 (582)
Q Consensus 238 --------------~~-~~~~~--------------~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~ 288 (582)
+. .+|.. ..+..+.+......++++||||.++++++.+++.|.+......+
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 00 00000 00111222122223489999999999999999998876533222
Q ss_pred CCCCeEEEEecCCCCHHHHHHhcCCCCCCCc-EEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCH
Q 037717 289 KIAELIICPIYANLPTELQAKIFEPTPERAR-KVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISK 367 (582)
Q Consensus 289 ~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~-kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~ 367 (582)
......+..+||+.+ +++.+++.|+++.. +|+|+++++.+|+|+|.|..|| +...+-|+
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV------------------f~rpvkS~ 787 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV------------------FLRRVRSR 787 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE------------------EecCCCCH
Confidence 223335566888875 45678889988876 7999999999999999999999 55566789
Q ss_pred HhHHHHhcCCCCCCC--Ce-EEEeeC
Q 037717 368 ASANQRTGLSERTGP--GK-CFRLYT 390 (582)
Q Consensus 368 ~~~~QR~GRaGR~~~--G~-~~~L~~ 390 (582)
..|.||+||+.|..+ |+ +|.+|.
T Consensus 788 ~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 788 ILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999999987 55 555555
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=2.2e-21 Score=211.10 Aligned_cols=278 Identities=15% Similarity=0.208 Sum_probs=169.7
Q ss_pred EEECCCCCchhchHhhhhc---c---------chHHHHHHHHHHHHHHhCCccCcEEeEEEe------ecccCCCCccEE
Q 037717 84 AIVGETGSGKTTQIPQYLY---E---------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR------FEDCTSDKTVLK 145 (582)
Q Consensus 84 iv~a~TGSGKTt~ip~~ll---~---------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~------~~~~~~~~t~I~ 145 (582)
++.|+||||||...-.++. . |++.++.+++.++.+.++..+....|..-. +........+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 4689999999954433321 1 999999999999988766433211110000 001122457899
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCcch------hHH-HHHHHHHHhhCCCceEEEecccCChHHHHhhhCCC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTLST------DNL-FGLLKDLINYRPDLKLLISSATLDAEKFSDYFGSA 218 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~------d~l-l~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~~~ 218 (582)
++|...+. ..+.++++|||||+|+-+... +.. +..++ ....+.++|++|||+..+.+.....+.
T Consensus 81 VGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r---a~~~~~~vil~SATPsles~~~~~~g~ 151 (505)
T TIGR00595 81 IGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR---AKKFNCPVVLGSATPSLESYHNAKQKA 151 (505)
T ss_pred ECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH---HHhcCCCEEEEeCCCCHHHHHHHhcCC
Confidence 99998663 137889999999999543222 110 12222 233688999999999888877654322
Q ss_pred -CEEeeCC----ceece-eEEEecCCc-hhHH-HHHHHHHHHHHhcCCCCCEEEEcCCHHH-------------------
Q 037717 219 -PIFKIPG----RRYPV-ELFYTKAPE-VDYI-EAAIVTALQIHVNEPTGDILVFLTGQDE------------------- 271 (582)
Q Consensus 219 -~v~~i~g----r~~~v-~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~g~iLVFl~~~~~------------------- 271 (582)
.....+. +..|. ++.-..... ...+ ...+..+.+.. ..++++|||+|++.-
T Consensus 152 ~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~ 229 (505)
T TIGR00595 152 YRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCD 229 (505)
T ss_pred eEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCC
Confidence 2222222 22221 111111110 0111 12222222222 235789999776542
Q ss_pred -----------------------------------------HHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHH--H
Q 037717 272 -----------------------------------------IERAEEILKQRTRGLGTKIAELIICPIYANLPTELQ--A 308 (582)
Q Consensus 272 -----------------------------------------i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r--~ 308 (582)
++.+.+.|.+.+ ++..+..+|++++...+ +
T Consensus 230 ~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 230 VSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred CceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcEEEEecccccCccHHH
Confidence 456666665533 56789999999987765 8
Q ss_pred HhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCc--ccccccccCHHhHHHHhcCCCCCCC-CeE
Q 037717 309 KIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGM--ESLLVNPISKASANQRTGLSERTGP-GKC 385 (582)
Q Consensus 309 ~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~--~~l~~~~~S~~~~~QR~GRaGR~~~-G~~ 385 (582)
++++.|++|+.+|||+|++++.|+|+|+|+.|+ ..|....+ ..+...--.-..+.|++|||||.+. |.+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~--------vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~v 374 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVG--------VLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQV 374 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEE--------EEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEE
Confidence 899999999999999999999999999999886 22222211 1111111233568999999999764 888
Q ss_pred EE
Q 037717 386 FR 387 (582)
Q Consensus 386 ~~ 387 (582)
+.
T Consensus 375 ii 376 (505)
T TIGR00595 375 II 376 (505)
T ss_pred EE
Confidence 74
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=3.2e-19 Score=201.28 Aligned_cols=287 Identities=19% Similarity=0.236 Sum_probs=211.5
Q ss_pred hHHHHHHHHHHhC----CC--eEEEECCCCCchhchHhhhhc----c--------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 67 YPFWEELLQAVSG----YP--VLAIVGETGSGKTTQIPQYLY----E--------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 67 ~~~~~~il~~i~~----~~--~viv~a~TGSGKTt~ip~~ll----~--------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
.+-|...++.+.+ ++ +=+|||.-|=|||-.+-.+.. + |+-++|.|-.+.+.+.+. .++..|
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I 674 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA-GFPVRI 674 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeE
Confidence 4446666666643 22 358899999999955544322 2 999999999999988774 334455
Q ss_pred eEEEeeccc----------CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCce
Q 037717 129 GYSIRFEDC----------TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLK 198 (582)
Q Consensus 129 gy~v~~~~~----------~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~k 198 (582)
+.-.||.+. ...+.+|+++|...| ..+-.+++++++||||=|..|+..---+ |. .+.++-
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk~KEkL---K~---Lr~~VD 744 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVKHKEKL---KE---LRANVD 744 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcCccHHHHH---HH---HhccCc
Confidence 555566543 235779999997543 2333499999999999998888763322 22 457899
Q ss_pred EEEecccCChHHHHhhhCC---CCEE-eeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 037717 199 LLISSATLDAEKFSDYFGS---APIF-KIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIER 274 (582)
Q Consensus 199 ii~~SAT~~~~~~~~~f~~---~~v~-~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 274 (582)
++-||||+=+..+.--+.+ -.++ +.|.+.+||..+..+.... .+.+++..-+ ..+|++-.-.|..++|+.
T Consensus 745 vLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~-~ireAI~REl-----~RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 745 VLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL-LIREAILREL-----LRGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChH-HHHHHHHHHH-----hcCCEEEEEecchhhHHH
Confidence 9999999955554443322 2333 3466789999988775543 2333222211 237999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCC
Q 037717 275 AEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPK 354 (582)
Q Consensus 275 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~ 354 (582)
+++.|++.. |+..+...||.|+..+-+.++..|-+|...|+|||.|.|+|||||+++.+| ..+..
T Consensus 819 ~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI--------Ie~AD 883 (1139)
T COG1197 819 KAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII--------IERAD 883 (1139)
T ss_pred HHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE--------Eeccc
Confidence 999999865 789999999999999999999999999999999999999999999999888 33331
Q ss_pred CCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 355 TGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 355 ~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
-.--++..|-.||+||... |.||.||+....
T Consensus 884 ---------~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~ 915 (1139)
T COG1197 884 ---------KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA 915 (1139)
T ss_pred ---------cccHHHHHHhccccCCccceEEEEEeecCccc
Confidence 1223568999999999886 999999997543
No 99
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.83 E-value=1.5e-20 Score=188.92 Aligned_cols=227 Identities=19% Similarity=0.226 Sum_probs=156.2
Q ss_pred CCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccC--CCcchhHHHHHHHHHHh---hCCCceEEEecccC---ChH
Q 037717 139 SDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQE--RTLSTDNLFGLLKDLIN---YRPDLKLLISSATL---DAE 209 (582)
Q Consensus 139 ~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~He--R~~~~d~ll~~lk~~~~---~~~~~kii~~SAT~---~~~ 209 (582)
.++++|+++|||+|++.+..... |..+.++|+||++- -....|.+..+-+.+-. ....++.+++|||+ ++.
T Consensus 337 ~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVk 416 (725)
T KOG0349|consen 337 KDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVK 416 (725)
T ss_pred hcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEee
Confidence 46899999999999999876655 88999999999971 11334554444433322 22458999999999 666
Q ss_pred HHHhhhCCCCE-EeeCCc-eeceeEEE-----ec-----------------CCchhH----------HHHHHHHHHH---
Q 037717 210 KFSDYFGSAPI-FKIPGR-RYPVELFY-----TK-----------------APEVDY----------IEAAIVTALQ--- 252 (582)
Q Consensus 210 ~~~~~f~~~~v-~~i~gr-~~~v~~~~-----~~-----------------~~~~~~----------~~~~~~~~~~--- 252 (582)
++++-.-.-|. +...|. ..|-++|. .+ .+..++ ...++ .+++
T Consensus 417 k~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~-kilkgEy 495 (725)
T KOG0349|consen 417 KVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSAT-KILKGEY 495 (725)
T ss_pred ehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhh-HHhcCch
Confidence 66643321111 111111 11111111 00 001111 11111 1111
Q ss_pred ---HHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCc
Q 037717 253 ---IHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAE 329 (582)
Q Consensus 253 ---i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae 329 (582)
........+.++||.++.+|+.+.+++.+... ..+.++.+||+..++||+.-++.|+.+..|.++||++|+
T Consensus 496 ~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaa 569 (725)
T KOG0349|consen 496 GVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAA 569 (725)
T ss_pred hhhhhhhhccCceEEEEeccccchHHHHHHHHcCC------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhh
Confidence 11122347899999999999999999987432 478999999999999999999999999999999999999
Q ss_pred cccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeC
Q 037717 330 TSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYT 390 (582)
Q Consensus 330 ~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~ 390 (582)
+|+||-++-|+|| ++.|-.|.+|.||+||+||... |..+.|..
T Consensus 570 rgldi~g~p~~in------------------vtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 570 RGLDITGLPFMIN------------------VTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ccccccCCceEEE------------------EecCcccchhhhhhhccchhhhcceeEEEee
Confidence 9999999999994 4456677789999999999876 88877754
No 100
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.82 E-value=5.9e-19 Score=174.77 Aligned_cols=279 Identities=18% Similarity=0.199 Sum_probs=176.3
Q ss_pred hHHHHHHHhcCC-CChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc-------chHHHHHHHHHHHHHHhCC
Q 037717 53 TLEMLQEERKTL-PIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE-------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 53 ~~~~~~~~r~~l-Pi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~-------P~r~~a~~~a~~va~~~~~ 122 (582)
+...+++....| ...+.|.+.+.+...+..++++.|||.||| +|+|.++.+ |.-.+.....-. -+.+|.
T Consensus 81 e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~-lkqlgi 159 (695)
T KOG0353|consen 81 EAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQ-LKQLGI 159 (695)
T ss_pred HHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHH-HHHhCc
Confidence 334444444433 256678899999999999999999999999 899988877 543332221111 111221
Q ss_pred ccCcEEeEE-----Eeecc---cCCCCccEEEEChHHHHH------HHHcCCCCCCCCceEeeccc-----CCCcchhH-
Q 037717 123 KLGHEVGYS-----IRFED---CTSDKTVLKYMTDCMLLR------EIVIEPSLESYSVLIVDEAQ-----ERTLSTDN- 182 (582)
Q Consensus 123 ~~g~~vgy~-----v~~~~---~~~~~t~I~~~T~g~Ll~------~l~~~~~l~~~~~vViDE~H-----eR~~~~d~- 182 (582)
.....-.-+ -+.+. .....-+++|.||+.+.. .+...-...-+..|-|||+| ..+...|.
T Consensus 160 ~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~ 239 (695)
T KOG0353|consen 160 DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYK 239 (695)
T ss_pred chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchH
Confidence 100000000 00011 122346899999987643 33222235678999999999 23333443
Q ss_pred HHHHHHHHHhhCCCceEEEecccCC---hHHHHhhhCCCCEEeeC-Cceec-ee--EEEecCCchhHHHHHHHHHHHHHh
Q 037717 183 LFGLLKDLINYRPDLKLLISSATLD---AEKFSDYFGSAPIFKIP-GRRYP-VE--LFYTKAPEVDYIEAAIVTALQIHV 255 (582)
Q Consensus 183 ll~~lk~~~~~~~~~kii~~SAT~~---~~~~~~~f~~~~v~~i~-gr~~~-v~--~~~~~~~~~~~~~~~~~~~~~i~~ 255 (582)
.|++||+ ..+...+|+++||.. ..+..+.++-...+... |-..| +. +.-.+..+.+..+..... +..
T Consensus 240 ~l~ilkr---qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~---i~~ 313 (695)
T KOG0353|consen 240 ALGILKR---QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKL---IKG 313 (695)
T ss_pred HHHHHHH---hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHH---hcc
Confidence 4666665 668999999999982 22333333211111111 11111 11 111223344444443222 222
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC
Q 037717 256 NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID 335 (582)
Q Consensus 256 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp 335 (582)
.-.+..-||||-++++++.++..|+. .++....+|+.|.++++..+-+.+-.|++.|||||-...+|||-|
T Consensus 314 ~f~gqsgiiyc~sq~d~ekva~alkn---------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkp 384 (695)
T KOG0353|consen 314 DFAGQSGIIYCFSQKDCEKVAKALKN---------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKP 384 (695)
T ss_pred ccCCCcceEEEeccccHHHHHHHHHh---------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCC
Confidence 23345679999999999999999987 578889999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCccc
Q 037717 336 GIKYVIHPGFAK 347 (582)
Q Consensus 336 ~v~~VID~g~~k 347 (582)
+|++||.-.++|
T Consensus 385 dvrfvihhsl~k 396 (695)
T KOG0353|consen 385 DVRFVIHHSLPK 396 (695)
T ss_pred CeeEEEecccch
Confidence 999999666554
No 101
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.82 E-value=1.8e-21 Score=209.71 Aligned_cols=497 Identities=10% Similarity=-0.124 Sum_probs=358.6
Q ss_pred HHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-----------------chHHHHHHHHHHHHHHhC
Q 037717 59 EERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-----------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 59 ~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-----------------P~r~~a~~~a~~va~~~~ 121 (582)
..+.-+|+.++.+.|++++..+.++++.+.||||||++.|+.+++ ||++.|...+.+++-+.+
T Consensus 400 getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fct 479 (1282)
T KOG0921|consen 400 GETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCT 479 (1282)
T ss_pred ecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeec
Confidence 345678999999999999999999999999999999999999987 999999999988888888
Q ss_pred CccCcEEeEEEeeccc-CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEE
Q 037717 122 VKLGHEVGYSIRFEDC-TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLL 200 (582)
Q Consensus 122 ~~~g~~vgy~v~~~~~-~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii 200 (582)
+.++...+|.++++.. .-.+..+-++|.+.+++.++.+ +.+..+.+.||.|+++++||+++.+++.+ ++++
T Consensus 480 vgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~ 551 (1282)
T KOG0921|consen 480 VGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVT 551 (1282)
T ss_pred cchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------ccee
Confidence 8888788887765543 2345567788999888877644 66778999999999999999999888763 3559
Q ss_pred EecccCChHHHHhhhCCCCEEeeCCceeceeEEE------------------------ec------------CCchhHHH
Q 037717 201 ISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFY------------------------TK------------APEVDYIE 244 (582)
Q Consensus 201 ~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~------------------------~~------------~~~~~~~~ 244 (582)
++++|.+++.|-.++-.+++..++++.++++.++ .. .......+
T Consensus 552 ~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~E 631 (1282)
T KOG0921|consen 552 VHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIE 631 (1282)
T ss_pred eccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHH
Confidence 9999999999888877788888888777664432 00 01123433
Q ss_pred HHHHHHHH------HHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC
Q 037717 245 AAIVTALQ------IHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA 318 (582)
Q Consensus 245 ~~~~~~~~------i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~ 318 (582)
+.+..+.. +..-.+++..|+|++++.-+......+... .-++. ....+.+.|......+++.+++....+.
T Consensus 632 al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~ilp~--Hsq~~~~eqrkvf~~~p~gv~kii~stn 708 (1282)
T KOG0921|consen 632 ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EILPL--HSQLTSQEQRKVFEPVPEGVTKIILSTN 708 (1282)
T ss_pred HHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-ccccc--hhhcccHhhhhccCcccccccccccccc
Confidence 33332221 233467899999999998888777766542 11111 3456778899999999999999999999
Q ss_pred cEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhhh
Q 037717 319 RKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRIW 398 (582)
Q Consensus 319 ~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~~ 398 (582)
+++...|+..++.|.+-+..+|++++..+.+.+.....++.....|-+...-.||.||++|...+.||.+.....+..+.
T Consensus 709 iaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~ 788 (1282)
T KOG0921|consen 709 IAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMF 788 (1282)
T ss_pred eeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhh
Confidence 99999999999999999999999999999888777777777888999999999999999999999999999999998877
Q ss_pred h--hhhHhhhh--HHHHHHHHhcCCccccc--cCCCCchHHHHHHHHHHHHHcCCCcCCC--ccchhchhhhcCCCChHH
Q 037717 399 M--TILCQKYN--ELIWKMLSLFSNVLVNF--DFIDPPLEEALLKAFELLYALGALNKAG--QLTRVGRQMAEFPIDPKL 470 (582)
Q Consensus 399 ~--~pei~r~~--~~~L~l~~l~~~~~~~f--~~~~~p~~~~i~~al~~L~~lgal~~~~--~lT~lG~~~a~lpl~p~~ 470 (582)
. .|||.++. ...+.++.+-.+.+..+ +.+.+|+......+ .|..-+-+...| .+|.+++.....|+.|..
T Consensus 789 r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~--~ld~n~elt~lg~~la~l~iep~~~k~~~lg~ 866 (1282)
T KOG0921|consen 789 RTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMG--ALDANDELTPLGRMLARLPIEPRIGKMMILGT 866 (1282)
T ss_pred cCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhh--hhhccCcccchhhhhhhccCcccccceeeech
Confidence 7 49988877 22222222222222222 45566655444433 333334444444 689999999999999999
Q ss_pred HHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHHHHHhhhccCCCCCcHHH---HHHHHH-HHHHcCCcHHHHH
Q 037717 471 SKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARMNFHLGDVGDRIA---LLRVYN-CWRECNYSTEWCR 546 (582)
Q Consensus 471 ~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~~f~~~~~sD~~~---~l~~~~-~~~~~~~~~~~c~ 546 (582)
+++...++.+-..+-...+.+.-.. ...|... .++ ..-+..+|+....+||.+ --.++. +-.+..+...||.
T Consensus 867 ~~g~~~~m~~~as~~s~~~~~~~~~-~~~~rl~-g~q--~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l 942 (1282)
T KOG0921|consen 867 ALGAGSVMCDVASAMSFPTPFVPRE-KHHSRLS-GTQ--RKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSL 942 (1282)
T ss_pred hhccchhhhhhhccccccccccccc-ccccccc-cch--hhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhh
Confidence 9988877766544444444443222 3333221 111 112344554443344421 222211 1122334456899
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhcC
Q 037717 547 ENYIQVSSMKRARDIRDQLEGLFARVE 573 (582)
Q Consensus 547 ~~~l~~~~l~~~~~~~~ql~~~l~~~~ 573 (582)
.+-++.-+...-+++..||. +|..-+
T Consensus 943 ~~~~~~~t~~a~~ql~d~L~-q~~fpe 968 (1282)
T KOG0921|consen 943 SNPVLKMTDGARRQLIDVLR-QCSFPE 968 (1282)
T ss_pred cchhhhhhhhhHHHHHHHHH-hccCcc
Confidence 99999999999999999998 665444
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.8e-17 Score=185.16 Aligned_cols=79 Identities=23% Similarity=0.168 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEE
Q 037717 244 EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVL 323 (582)
Q Consensus 244 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViv 323 (582)
.+.+..+...|. .+.++||||++.+..+.+++.|.+ .++....+||.+.+.+++.|.+++++|. |+|
T Consensus 431 ~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~---------~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtI 497 (896)
T PRK13104 431 QAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKK---------ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTI 497 (896)
T ss_pred HHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHH---------cCCCeEeecCCCChHHHHHHHhCCCCCc--EEE
Confidence 344444544443 478999999999999999999988 5788899999999999999999999994 999
Q ss_pred eCCCCccccccC
Q 037717 324 ATNIAETSLTID 335 (582)
Q Consensus 324 aT~iae~gidIp 335 (582)
|||+|++|+||-
T Consensus 498 ATNmAGRGtDI~ 509 (896)
T PRK13104 498 ATNMAGRGTDIV 509 (896)
T ss_pred eccCccCCccee
Confidence 999999999986
No 103
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.75 E-value=2.9e-17 Score=179.17 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=103.4
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCc-c--Cc
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVK-L--GH 126 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~-~--g~ 126 (582)
+--...|.+.++.+..+..++|+|||.+|||+.-+.++-. |++.+..+++..|-...+.. + |.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 5566789999999999999999999999999655544321 99999999987776555321 1 11
Q ss_pred EE-eEEEeecccCCCCccEEEEChHHHHHHHHcCCC----CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 127 EV-GYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS----LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 127 ~v-gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~----l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
.+ |--.+.-+...-+++|+++-|+.+-..|.+.|. ...++++|+||+|.-|-.-|-++-.. +-.--.+.+++
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq---ll~li~CP~L~ 666 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQ---LLLLIPCPFLV 666 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHH---HHHhcCCCeeE
Confidence 11 100000011123789999999999888877543 78899999999995443333222111 11113568999
Q ss_pred ecccC-ChHHHHhhhC
Q 037717 202 SSATL-DAEKFSDYFG 216 (582)
Q Consensus 202 ~SAT~-~~~~~~~~f~ 216 (582)
+|||+ |++.|..|+.
T Consensus 667 LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLN 682 (1330)
T ss_pred EecccCCHHHHHHHHH
Confidence 99999 9999999986
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=4.7e-17 Score=181.00 Aligned_cols=107 Identities=26% Similarity=0.251 Sum_probs=93.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCcccccc--
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTI-- 334 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidI-- 334 (582)
..+.++||||++...++.+++.|.+ .++....+||.....+++.|.+++++|. |+||||+|++|+||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~---------~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l 506 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDE---------AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKL 506 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHH---------CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCC
Confidence 3478999999999999999999988 4677889999999999999999888886 99999999999999
Q ss_pred -CCee-----EEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChh
Q 037717 335 -DGIK-----YVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLH 392 (582)
Q Consensus 335 -p~v~-----~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~ 392 (582)
++|. +||. ...|-|+..+.||.|||||.|. |.+..+.+.+
T Consensus 507 ~~~V~~~GGLhVI~------------------te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 507 GPGVKELGGLAVIG------------------TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred CcchhhhCCcEEEe------------------eecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 4899 9993 3346778889999999999995 9987777765
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=5.8e-17 Score=180.97 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCC
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDG 336 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~ 336 (582)
..+.++||||.+.+.++.+++.|.+ .++....+||. +.+|+..+..|..+...|+||||+|++|+||+=
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~---------~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~L 496 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKK---------AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKL 496 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHH---------CCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccC
Confidence 3467999999999999999999987 46778889995 788999999999999999999999999999982
Q ss_pred e---eEEEeCCccc----------------ceeecCCCCcccccc-cccCHHhHHHHhcCCCCCC-CCeEEEeeCh
Q 037717 337 I---KYVIHPGFAK----------------VKSYNPKTGMESLLV-NPISKASANQRTGLSERTG-PGKCFRLYTL 391 (582)
Q Consensus 337 v---~~VID~g~~k----------------~~~yd~~~~~~~l~~-~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~ 391 (582)
= .+.....+.. ...--...|+..+.+ .+-|+--=.|-.|||||.| ||.+-.+.+-
T Consensus 497 gGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSl 572 (830)
T PRK12904 497 GGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 572 (830)
T ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEc
Confidence 1 0000000000 000000122222222 3566666789999999999 4876555443
No 106
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.75 E-value=1.2e-16 Score=183.19 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=96.3
Q ss_pred HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCC--CCcEEEEeCCCC
Q 037717 251 LQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPE--RARKVVLATNIA 328 (582)
Q Consensus 251 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~--g~~kVivaT~ia 328 (582)
..+.....+.++||||.++..+..+++.|... .++.+..+||+|++.+|+++.+.|.+ |..+|+|||+++
T Consensus 485 ~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 485 IDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred HHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 33334444678999999999999999999542 46889999999999999999999987 468999999999
Q ss_pred ccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChhh
Q 037717 329 ETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLHN 393 (582)
Q Consensus 329 e~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~~ 393 (582)
++|+|++.+++|| .|| .|.+...|.||+||+||.|. -..|.++.+..
T Consensus 557 seGlNlq~a~~VI--------nfD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 557 SEGRNFQFASHLV--------LFD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT 606 (956)
T ss_pred ccCCCcccccEEE--------Eec----------CCCCHHHHHHHhcccccCCCCceEEEEEccCCCC
Confidence 9999999999999 444 35677789999999999885 34566666543
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.74 E-value=4e-17 Score=185.76 Aligned_cols=295 Identities=21% Similarity=0.178 Sum_probs=172.0
Q ss_pred ChHHHHHHHHHHh---CCC-eEEEECCCCCchhchHhhhhcc----------------chHHHHHHHHHHHHHHhCC--c
Q 037717 66 IYPFWEELLQAVS---GYP-VLAIVGETGSGKTTQIPQYLYE----------------PRWVAAMSVAARVSQEMGV--K 123 (582)
Q Consensus 66 i~~~~~~il~~i~---~~~-~viv~a~TGSGKTt~ip~~ll~----------------P~r~~a~~~a~~va~~~~~--~ 123 (582)
.++.|..+++.+. ... .+++.||||+|||+..-.+.+. |.|.+..++..++....+. .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 4566666666554 345 8999999999999544322111 9999999998888754332 1
Q ss_pred cCc-EEeEEEee---cc-----c---CC-----CCccEEEEChHHHHHHHHcCCCC-----CCCCceEeecccCCCcc--
Q 037717 124 LGH-EVGYSIRF---ED-----C---TS-----DKTVLKYMTDCMLLREIVIEPSL-----ESYSVLIVDEAQERTLS-- 179 (582)
Q Consensus 124 ~g~-~vgy~v~~---~~-----~---~~-----~~t~I~~~T~g~Ll~~l~~~~~l-----~~~~~vViDE~HeR~~~-- 179 (582)
.+. ..|..... +. . +. .-..+.++|+-..+......... -..+++|+||+|-..-+
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 122 11111100 00 0 00 01123333433333221111111 23589999999943333
Q ss_pred hhHHHHHHHHHHhhCCCceEEEecccCCh---HHHHhhhCCCCEEeeCCceeceeEEEe--cCCchhHHHHH--HHHHHH
Q 037717 180 TDNLFGLLKDLINYRPDLKLLISSATLDA---EKFSDYFGSAPIFKIPGRRYPVELFYT--KAPEVDYIEAA--IVTALQ 252 (582)
Q Consensus 180 ~d~ll~~lk~~~~~~~~~kii~~SAT~~~---~~~~~~f~~~~v~~i~gr~~~v~~~~~--~~~~~~~~~~~--~~~~~~ 252 (582)
.-++++++..+.. -+.++|+||||+.. +.+.++++....+.......+....+. .....+..+.. -.....
T Consensus 356 ~~~l~~~i~~l~~--~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 356 LAALLALLEALAE--AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 3444555544332 47899999999943 444555543222221100000000000 00001111110 011111
Q ss_pred HHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCC----CCCCCcEEEEeCCCC
Q 037717 253 IHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEP----TPERARKVVLATNIA 328 (582)
Q Consensus 253 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~----~~~g~~kVivaT~ia 328 (582)
......+++++|-++|.+.+.++++.|++.. ..++-+||.++..+|.+.++. +..+.-.|+|||.+.
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVI 504 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKG---------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVI 504 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcC---------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEE
Confidence 1223456899999999999999999998732 268999999999999887763 245677999999999
Q ss_pred ccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC--C-CeEEEeeChh
Q 037717 329 ETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG--P-GKCFRLYTLH 392 (582)
Q Consensus 329 e~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~--~-G~~~~L~~~~ 392 (582)
|.|+||. .+++| +.+.+..+..||+||.+|.| . |..|..-...
T Consensus 505 EagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 505 EAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9999998 66666 45677789999999999999 4 5555444333
No 108
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.73 E-value=7.6e-18 Score=144.04 Aligned_cols=92 Identities=45% Similarity=0.729 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccccChhhHHHHH--HHh
Q 037717 437 KAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFYRPKDKQIYAD--NAR 514 (582)
Q Consensus 437 ~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~--~~~ 514 (582)
+|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|++++++|+|+|++ .++|..|.+++...+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999 889999765443332 233
Q ss_pred hhc--------cCCCCCcHHHHH
Q 037717 515 MNF--------HLGDVGDRIALL 529 (582)
Q Consensus 515 ~~f--------~~~~~sD~~~~l 529 (582)
.+| ..+..|||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 344 233569999986
No 109
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=1.8e-16 Score=164.59 Aligned_cols=267 Identities=24% Similarity=0.268 Sum_probs=174.3
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc--------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChH
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE--------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDC 150 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~--------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g 150 (582)
..++++-+|||.||||+-+.|-+.+ |.|.+|..++.|+.. .|.......|-..++.-.....+..+-||.+
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hvScTVE 268 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHVSCTVE 268 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccceEEEEE
Confidence 3456888999999999888877665 999999999998755 4555444445444444333445667788887
Q ss_pred HHHHHHHcCCCCCCCCceEeeccc-----CCCc-chhHHHHHHHHHHhhCCCceEEEecccC-ChHHHHhhhCCCCEEee
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQ-----ERTL-STDNLFGLLKDLINYRPDLKLLISSATL-DAEKFSDYFGSAPIFKI 223 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~H-----eR~~-~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i 223 (582)
|.- .-..|++.||||++ .||+ .|..+|++..+-+....+. |-+ =+.++.+.
T Consensus 269 M~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGep------svldlV~~i~k~--------- 326 (700)
T KOG0953|consen 269 MVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEP------SVLDLVRKILKM--------- 326 (700)
T ss_pred Eee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCc------hHHHHHHHHHhh---------
Confidence 742 34568999999999 5664 3667777766544433322 111 12223322
Q ss_pred CCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCC
Q 037717 224 PGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLP 303 (582)
Q Consensus 224 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 303 (582)
.|....|..+-.-.|- ...+ ..+.-..+-.+|+++|=+ ++++|-.+...+.+.. ...+..+||+||
T Consensus 327 TGd~vev~~YeRl~pL-~v~~----~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g--------~~k~aVIYGsLP 392 (700)
T KOG0953|consen 327 TGDDVEVREYERLSPL-VVEE----TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAG--------NHKCAVIYGSLP 392 (700)
T ss_pred cCCeeEEEeecccCcc-eehh----hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhc--------CcceEEEecCCC
Confidence 2333322222111111 1111 222223334567877644 5889999999998742 345888999999
Q ss_pred HHHHHHhcCCC--CCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC
Q 037717 304 TELQAKIFEPT--PERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG 381 (582)
Q Consensus 304 ~~~r~~v~~~~--~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~ 381 (582)
++.|..--..| +++..+|+|||+...+|+|+. |+-||=+.+.| |+ .-.+.+++.++..|-+|||||.|
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccc
Confidence 98765433334 458899999999999999998 77777333322 33 24567899999999999999998
Q ss_pred C----CeEEEeeChh
Q 037717 382 P----GKCFRLYTLH 392 (582)
Q Consensus 382 ~----G~~~~L~~~~ 392 (582)
. |..-.|+.++
T Consensus 463 s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 463 SKYPQGEVTTLHSED 477 (700)
T ss_pred cCCcCceEEEeeHhh
Confidence 3 8877777764
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=3.5e-15 Score=166.58 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEE
Q 037717 244 EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVL 323 (582)
Q Consensus 244 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViv 323 (582)
.+.+..+...|. .+.++||||.+.+..+.++..|.. .++....+|+..++.+++.|.+.+++|. |+|
T Consensus 436 ~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~---------~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtI 502 (908)
T PRK13107 436 QAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVK---------EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTI 502 (908)
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHH---------CCCCeEeccCcccHHHHHHHHhCCCCCc--EEE
Confidence 344555555553 378899999999999999999987 4677888999999999999999999998 999
Q ss_pred eCCCCccccccC
Q 037717 324 ATNIAETSLTID 335 (582)
Q Consensus 324 aT~iae~gidIp 335 (582)
|||+|++|+||.
T Consensus 503 ATnmAGRGTDIk 514 (908)
T PRK13107 503 ATNMAGRGTDIV 514 (908)
T ss_pred ecCCcCCCccee
Confidence 999999999986
No 111
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.64 E-value=4.7e-16 Score=130.60 Aligned_cols=91 Identities=51% Similarity=0.813 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccc-cChHHHHHHHHhhccCCCccccChhhHHHHHHHhh
Q 037717 437 KAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKY-KCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARM 515 (582)
Q Consensus 437 ~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~-~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~ 515 (582)
+|++.|+.+||||.+|+||++|+.|++||++|++||||+.|..+ +|.+++++|+|++++ .++|..+ .........+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~-~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSV-GDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcC-CCCcCCc-hHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 899999999999998 4577766 44555666777
Q ss_pred hccCCCCCcHHHHH
Q 037717 516 NFHLGDVGDRIALL 529 (582)
Q Consensus 516 ~f~~~~~sD~~~~l 529 (582)
.|.....|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 88765359999864
No 112
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=2.4e-15 Score=142.37 Aligned_cols=274 Identities=17% Similarity=0.217 Sum_probs=160.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHH---H
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAA---R 115 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~---~ 115 (582)
+..+-..-..-|-.-+++-|.++|..-+ ++..|..|-|||......-+. .+|.+|-++.+ |
T Consensus 54 lraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~r 132 (387)
T KOG0329|consen 54 LRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYER 132 (387)
T ss_pred HHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHH
Confidence 3445555566777767777778887665 778999999999544333222 78999999954 5
Q ss_pred HHHHhCC-ccCcEE-eEEEeeccc-CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHH
Q 037717 116 VSQEMGV-KLGHEV-GYSIRFEDC-TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLI 191 (582)
Q Consensus 116 va~~~~~-~~g~~v-gy~v~~~~~-~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~ 191 (582)
+++.+-. .+.... |..+.-+.. .....+|+++|||+++....+... |+++.+.|+||++..--..|.--. ...+.
T Consensus 133 fskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRD-vQEif 211 (387)
T KOG0329|consen 133 FSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD-VQEIF 211 (387)
T ss_pred HHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHH-HHHHh
Confidence 5655531 111111 223332221 223578999999999998877666 999999999999821111111111 11222
Q ss_pred h-hCCCceEEEecccC--ChHHHHhhhCCCCE-EeeCCc----eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 192 N-YRPDLKLLISSATL--DAEKFSDYFGSAPI-FKIPGR----RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 192 ~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v-~~i~gr----~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
+ ..++-|++++|||+ +......-|-..|+ +.++.. .+-+..+|.+..+... +..+..++.. -.-.+++
T Consensus 212 r~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eK-Nrkl~dLLd~---LeFNQVv 287 (387)
T KOG0329|consen 212 RMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEK-NRKLNDLLDV---LEFNQVV 287 (387)
T ss_pred hcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhh-hhhhhhhhhh---hhhccee
Confidence 2 23466888999999 44444444433321 111110 1112222222111110 1111111111 1235677
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
||+.+... ++ | ..+ +|||++..+|+||..+..|+|
T Consensus 288 IFvKsv~R------------------------------l~----------f---~kr-~vat~lfgrgmdiervNi~~N- 322 (387)
T KOG0329|consen 288 IFVKSVQR------------------------------LS----------F---QKR-LVATDLFGRGMDIERVNIVFN- 322 (387)
T ss_pred Eeeehhhh------------------------------hh----------h---hhh-hHHhhhhccccCcccceeeec-
Confidence 77665432 00 1 123 899999999999999999994
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYH 395 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~ 395 (582)
||. |-+..+|.||.|||||.|. |..+.+.+.+.-.
T Consensus 323 -------Ydm----------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 323 -------YDM----------PEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred -------cCC----------CCCchHHHHHhhhhhccccccceeehhcchhhH
Confidence 443 3344579999999999997 8888887765443
No 113
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=2.8e-15 Score=155.54 Aligned_cols=294 Identities=15% Similarity=0.051 Sum_probs=193.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh------hcc---------chHHHHHHHHHHHHHHhC
Q 037717 57 LQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY------LYE---------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 57 ~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~------ll~---------P~r~~a~~~a~~va~~~~ 121 (582)
+.+....-.-+.+|.+++..+.+++++++...|.|||++. |+. ++. |....+. +
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~-~~~~s~~~~~~~~~s~~~~~~~~~~~~~----------~ 346 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTC-PTSGSRKFQTLCHATNSLLPSEMVEHLR----------N 346 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccC-cccchhhhhhcCcccceecchhHHHHhh----------c
Confidence 3344455668899999999999999999999999999953 221 111 3332222 2
Q ss_pred CccCcEEe----------EEEeecccC--------CCCccEEEEChHHHHHHHHcCCC-----CCCCCceEeeccc-CCC
Q 037717 122 VKLGHEVG----------YSIRFEDCT--------SDKTVLKYMTDCMLLREIVIEPS-----LESYSVLIVDEAQ-ERT 177 (582)
Q Consensus 122 ~~~g~~vg----------y~v~~~~~~--------~~~t~I~~~T~g~Ll~~l~~~~~-----l~~~~~vViDE~H-eR~ 177 (582)
..-|..|- |.-..+..+ ..+.+++|..+.+.....+.+.. +-...++++||+| ..+
T Consensus 347 ~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 347 GSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred cCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 22222221 111111111 12568999999888776654432 3445788999999 222
Q ss_pred cchh---HHHHHHHHHHh---hCCCceEEEecccC--ChHHHHhhhCCC--CEEeeCCceeceeEEEecCCc--------
Q 037717 178 LSTD---NLFGLLKDLIN---YRPDLKLLISSATL--DAEKFSDYFGSA--PIFKIPGRRYPVELFYTKAPE-------- 239 (582)
Q Consensus 178 ~~~d---~ll~~lk~~~~---~~~~~kii~~SAT~--~~~~~~~~f~~~--~v~~i~gr~~~v~~~~~~~~~-------- 239 (582)
+... ..+..|.++++ .+.+++++-.|||. ......+.|+-. ..++++|.+..-+.+..-.|.
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhh
Confidence 2222 22222333332 45689999999999 456677777744 456777776554444332221
Q ss_pred -hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC
Q 037717 240 -VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA 318 (582)
Q Consensus 240 -~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~ 318 (582)
.+++.+......++. ..+-.+|.||++++-|+.+....++.+...++++- -.+..+.||...++|++|+...-.|+
T Consensus 507 ~~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV-~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLV-EAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHH-HHHHhhcCccchhhHHHHHHHhhCCe
Confidence 122322222223332 23568999999999999887776665443333211 13566789999999999999888999
Q ss_pred cEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC
Q 037717 319 RKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP 382 (582)
Q Consensus 319 ~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 382 (582)
.+-|+|||.+|.||||.+.+.|+.+|+ |.|.+++.|..|||||...
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 999999999999999999999997775 7899999999999999874
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.59 E-value=6.5e-15 Score=137.66 Aligned_cols=143 Identities=19% Similarity=0.172 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEe
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR 133 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~ 133 (582)
++|.++++.+.+++++++.||||||||+....+++. |++.++.+...++....... +..+.....
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccc-ccccccccc
Confidence 679999999999999999999999999766554432 99999999998887766542 112221111
Q ss_pred ecc-------cCCCCccEEEEChHHHHHHHHcCC-CCCCCCceEeecccCCCcc-hhHHHHHHHHHHhhCCCceEEEecc
Q 037717 134 FED-------CTSDKTVLKYMTDCMLLREIVIEP-SLESYSVLIVDEAQERTLS-TDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 134 ~~~-------~~~~~t~I~~~T~g~Ll~~l~~~~-~l~~~~~vViDE~HeR~~~-~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
... ....+.+|+|+||++|++.+.... .+.++++||+||+|..+.. ....+..+.......++.++|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 000 112468999999999999988643 3666999999999954442 1222222222233334789999999
Q ss_pred cCChHHHH
Q 037717 205 TLDAEKFS 212 (582)
Q Consensus 205 T~~~~~~~ 212 (582)
|+. ..+.
T Consensus 161 T~~-~~~~ 167 (169)
T PF00270_consen 161 TLP-SNVE 167 (169)
T ss_dssp SST-HHHH
T ss_pred CCC-hhHh
Confidence 996 4443
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.59 E-value=1.2e-14 Score=162.21 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=100.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCC
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDG 336 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~ 336 (582)
..+.++|||+++++.++.+++.|.+ .++.+..+||++++.+|.++++.|+.|...|+|||+++++|+|+|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~---------~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~ 510 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKE---------LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhh---------hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCC
Confidence 3467899999999999999999987 3677889999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhh
Q 037717 337 IKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHN 393 (582)
Q Consensus 337 v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~ 393 (582)
+++|| .+|.. ....|-|..+|.||+|||||..+|+++.+++...
T Consensus 511 v~lVv--------i~Dad-----ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 511 VSLVA--------ILDAD-----KEGFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred CcEEE--------EeCcc-----cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 99999 44432 2335678889999999999999999988887543
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.57 E-value=1.6e-13 Score=149.83 Aligned_cols=280 Identities=14% Similarity=0.162 Sum_probs=166.5
Q ss_pred hHHHHHHH----HHHhCC-CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 67 YPFWEELL----QAVSGY-PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 67 ~~~~~~il----~~i~~~-~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
..||..++ +++.+| +-++++..||+|||..+-+++.. -|+++..|....+.+-+ +-|..
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~--P~~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFL--PFGTK 244 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhC--CCccc
Confidence 45666555 444443 44888899999999555555432 67777777665544332 22222
Q ss_pred EeEEEeecccCCCCccEEEEChHHHHHHHHcC-CC-----CCCCCceEeecccCCCcchhH--HHHHHHHHHhhCCCceE
Q 037717 128 VGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE-PS-----LESYSVLIVDEAQERTLSTDN--LFGLLKDLINYRPDLKL 199 (582)
Q Consensus 128 vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~-~~-----l~~~~~vViDE~HeR~~~~d~--ll~~lk~~~~~~~~~ki 199 (582)
+.. -.+......++|-++|...+....... .. ...|++||||||| ||...+. ++.++.. -.
T Consensus 245 ~n~--i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~~I~dYFdA--------~~ 313 (875)
T COG4096 245 MNK--IEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWSSILDYFDA--------AT 313 (875)
T ss_pred eee--eecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhHHHHHHHHH--------HH
Confidence 211 112223335799999998888776554 11 4559999999999 8765443 2233222 23
Q ss_pred EEecccC-ChHH--HHhhhCCCCEEe------------eCCceeceeEEEec-------C-------------CchhH--
Q 037717 200 LISSATL-DAEK--FSDYFGSAPIFK------------IPGRRYPVELFYTK-------A-------------PEVDY-- 242 (582)
Q Consensus 200 i~~SAT~-~~~~--~~~~f~~~~v~~------------i~gr~~~v~~~~~~-------~-------------~~~~~-- 242 (582)
++++||+ +... --.||++.|+.. +|-+...+...+.. . ...+|
T Consensus 314 ~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~ 393 (875)
T COG4096 314 QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEA 393 (875)
T ss_pred HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccc
Confidence 4459999 3222 234785555532 22222222222110 0 00000
Q ss_pred -----------HHHHHH-HHHHHHhc--C--CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHH
Q 037717 243 -----------IEAAIV-TALQIHVN--E--PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTEL 306 (582)
Q Consensus 243 -----------~~~~~~-~~~~i~~~--~--~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 306 (582)
....+. .+...... . ..+++||||.+..+++.+...|.......+ +--+..+.|.-.+.+
T Consensus 394 ~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~----~~~a~~IT~d~~~~q 469 (875)
T COG4096 394 RDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN----GRYAMKITGDAEQAQ 469 (875)
T ss_pred cccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc----CceEEEEeccchhhH
Confidence 011122 22222222 1 137899999999999999999988665432 233555555544333
Q ss_pred HHHhcCCC-CCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC
Q 037717 307 QAKIFEPT-PERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP 382 (582)
Q Consensus 307 r~~v~~~~-~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 382 (582)
..|-+.+ ++.-.+|.++.+.+.||||+|.|..+| +...--|+.-|+||.||+-|..+
T Consensus 470 -~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV------------------F~r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 470 -ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV------------------FDRKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred -HHHHHHHhcCCCCceEEehhhhhcCCCchheeeee------------------ehhhhhhHHHHHHHhcCccccCc
Confidence 3332222 345568999999999999999999988 44455789999999999999875
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2.9e-13 Score=151.63 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=81.3
Q ss_pred cCCC--ChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhh----------ccchHHHHHHHHHHHHHHhCCccCcE
Q 037717 62 KTLP--IYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYL----------YEPRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 62 ~~lP--i~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~l----------l~P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
...| +.+++.+++..+..++.+|..++||+||| +.+|.+. +-|+|.+|.+.+..+.. +...+|..
T Consensus 87 ~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~-L~k~lGLs 165 (970)
T PRK12899 87 YHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGS-VLRWLGLT 165 (970)
T ss_pred ccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHH-HHhhcCCe
Confidence 3456 89999999999999999999999999999 4455441 11999999999876554 33445556
Q ss_pred EeEEEeeccc----CCCCccEEEEChHHH-HHHHHcCCC-CC-------CCCceEeeccc
Q 037717 128 VGYSIRFEDC----TSDKTVLKYMTDCML-LREIVIEPS-LE-------SYSVLIVDEAQ 174 (582)
Q Consensus 128 vgy~v~~~~~----~~~~t~I~~~T~g~L-l~~l~~~~~-l~-------~~~~vViDE~H 174 (582)
+|..+.+.+. ..-+++|+|+|||.| ++.+..+.. ++ .+.++|||||+
T Consensus 166 V~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 166 TGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 6554332211 112579999999999 888765533 33 56899999999
No 118
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.54 E-value=4.8e-14 Score=125.69 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=92.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCe
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGI 337 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v 337 (582)
+++++|||+++...++.+++.|.+ ....+..+||+++..+|..+++.|.+|..+|+++|+.+++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK---------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 468999999999999999999986 35678999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEE
Q 037717 338 KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFR 387 (582)
Q Consensus 338 ~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~ 387 (582)
+.|| +...|.+...+.|++||+||.| .|.|+.
T Consensus 98 ~~vi------------------~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 98 SVVI------------------NYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CEEE------------------EeCCCCCHHHheecccccccCCCCceEEe
Confidence 9999 3333678889999999999999 487764
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.52 E-value=1.6e-13 Score=154.41 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=99.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCe
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGI 337 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v 337 (582)
.+.++|||+++++.++.+++.|.+ .++.+..+||++++.+|..+++.|++|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~---------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKE---------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhh---------cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 367899999999999999999987 46889999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChh
Q 037717 338 KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLH 392 (582)
Q Consensus 338 ~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~ 392 (582)
++|| .||.. +...|.+..+|.||+||+||...|+|+.+.+..
T Consensus 516 ~lVi--------i~d~e-----ifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~ 557 (652)
T PRK05298 516 SLVA--------ILDAD-----KEGFLRSERSLIQTIGRAARNVNGKVILYADKI 557 (652)
T ss_pred cEEE--------EeCCc-----ccccCCCHHHHHHHhccccCCCCCEEEEEecCC
Confidence 9999 34422 223456888999999999999889999998853
No 120
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.51 E-value=3.9e-13 Score=129.87 Aligned_cols=143 Identities=17% Similarity=0.031 Sum_probs=95.2
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----------------cchHHHHHHHHHHHHHHhCCccC
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----------------EPRWVAAMSVAARVSQEMGVKLG 125 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----------------~P~r~~a~~~a~~va~~~~~~~g 125 (582)
.-..+++|.+++..+..++++++++|||+|||......++ -|++.++.+.+..+..... ..+
T Consensus 19 ~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~ 97 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGK-HTN 97 (203)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCC
Confidence 3447889999999999999999999999999954322221 1999999998877655432 122
Q ss_pred cEEeEEEeec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCce
Q 037717 126 HEVGYSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLK 198 (582)
Q Consensus 126 ~~vgy~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~k 198 (582)
..++...... .....+.+|+++|++.|++.+..... +.+++++|+||+|.-. +..+...+........++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~~~~~l~~~~~ 176 (203)
T cd00268 98 LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIREILKLLPKDRQ 176 (203)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHHHHHhCCcccE
Confidence 2222111100 11123678999999999998876654 8899999999999422 22211111111112345899
Q ss_pred EEEecccCC
Q 037717 199 LLISSATLD 207 (582)
Q Consensus 199 ii~~SAT~~ 207 (582)
++++|||+.
T Consensus 177 ~~~~SAT~~ 185 (203)
T cd00268 177 TLLFSATMP 185 (203)
T ss_pred EEEEeccCC
Confidence 999999993
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.47 E-value=2.5e-12 Score=145.14 Aligned_cols=273 Identities=14% Similarity=0.047 Sum_probs=152.0
Q ss_pred CCeEEEECCCCCchhchHhhh---hcc-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecc-cCCCCccE
Q 037717 80 YPVLAIVGETGSGKTTQIPQY---LYE-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED-CTSDKTVL 144 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~---ll~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~-~~~~~t~I 144 (582)
.+..+|..+||||||..+..+ ++. ||..+..|....+........ ..++..-.... .......|
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~i 341 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGI 341 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCE
Confidence 357899999999999443322 221 999999999887765432111 00110000000 11234689
Q ss_pred EEEChHHHHHHHHcC--C-CCCCC-CceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCC----hHHHHhhhC
Q 037717 145 KYMTDCMLLREIVIE--P-SLESY-SVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLD----AEKFSDYFG 216 (582)
Q Consensus 145 ~~~T~g~Ll~~l~~~--~-~l~~~-~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~----~~~~~~~f~ 216 (582)
+++|...+.+.+... + ..... -+||+|||| |+....+ ...++ ...|+...+++|||+- ...+ +.|+
T Consensus 342 ivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~-~~~l~---~~~p~a~~lGfTaTP~~~~d~~t~-~~f~ 415 (667)
T TIGR00348 342 IITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGEL-AKNLK---KALKNASFFGFTGTPIFKKDRDTS-LTFA 415 (667)
T ss_pred EEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHH-HHHHH---hhCCCCcEEEEeCCCccccccccc-cccc
Confidence 999999987643221 1 11111 279999999 6654332 22222 3457889999999992 1222 2333
Q ss_pred ---CCCEEee-------CCceeceeEEEecCCch-------------hH---------------H---------------
Q 037717 217 ---SAPIFKI-------PGRRYPVELFYTKAPEV-------------DY---------------I--------------- 243 (582)
Q Consensus 217 ---~~~v~~i-------~gr~~~v~~~~~~~~~~-------------~~---------------~--------------- 243 (582)
+.++... .|-..|+ .|...... ++ +
T Consensus 416 ~~fg~~i~~Y~~~~AI~dG~~~~i--~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 493 (667)
T TIGR00348 416 YVFGRYLHRYFITDAIRDGLTVKI--DYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNED 493 (667)
T ss_pred CCCCCeEEEeeHHHHhhcCCeeeE--EEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChH
Confidence 1222221 2323332 23221100 00 0
Q ss_pred --HHHHHHHHHHH---hcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHH-------------
Q 037717 244 --EAAIVTALQIH---VNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTE------------- 305 (582)
Q Consensus 244 --~~~~~~~~~i~---~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~------------- 305 (582)
......++.-. ....+++.+|||.++..+..+++.|.+...... +.....++++-..+
T Consensus 494 ~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~~~~~~~~~~~~~ 569 (667)
T TIGR00348 494 RLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDAEIRDYNKHIRTK 569 (667)
T ss_pred HHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchhHHHHHHHHhccc
Confidence 00000111111 112248999999999999999988876532211 12333444432211
Q ss_pred --------HHHHhcCCCCC-CCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcC
Q 037717 306 --------LQAKIFEPTPE-RARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGL 376 (582)
Q Consensus 306 --------~r~~v~~~~~~-g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GR 376 (582)
..+.+.+.|+. +..+|+|.++.+-||+|.|.+.+++ ...|..-..+.|.+||
T Consensus 570 ~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy-------------------ldKplk~h~LlQai~R 630 (667)
T TIGR00348 570 FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY-------------------LDKPLKYHGLLQAIAR 630 (667)
T ss_pred cccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE-------------------EeccccccHHHHHHHH
Confidence 12355666654 6789999999999999999998877 1123333468999999
Q ss_pred CCCC-CCCe
Q 037717 377 SERT-GPGK 384 (582)
Q Consensus 377 aGR~-~~G~ 384 (582)
+.|. .+|+
T Consensus 631 ~nR~~~~~K 639 (667)
T TIGR00348 631 TNRIDGKDK 639 (667)
T ss_pred hccccCCCC
Confidence 9994 5554
No 122
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.45 E-value=7.6e-14 Score=113.20 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=67.2
Q ss_pred CCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhH
Q 037717 291 AELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASA 370 (582)
Q Consensus 291 ~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~ 370 (582)
.++.+..+||++++++|+.+++.|.+|..+||+||+++++|+|+|++++||..+ .|.|..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~------------------~~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYD------------------PPWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESS------------------SESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccc------------------cCCCHHHH
Confidence 578899999999999999999999999999999999999999999999999433 36788899
Q ss_pred HHHhcCCCCCC
Q 037717 371 NQRTGLSERTG 381 (582)
Q Consensus 371 ~QR~GRaGR~~ 381 (582)
.||+||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999986
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.41 E-value=2.3e-11 Score=140.55 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=91.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCC---CCcEEEEeCCCCcccccc
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPE---RARKVVLATNIAETSLTI 334 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~---g~~kVivaT~iae~gidI 334 (582)
.+.++|||+.-....+.+.+.|.. .++..+.+||+++.++|+.+++.|.. +...+|++|.++..|||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~---------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY---------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH---------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 356899999887777777777765 46778899999999999999999954 334678999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChhhhhh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLHNYHR 396 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~~~~~ 396 (582)
...++|| .||+ |-+.+...|+.||+-|-|. -.+|+|+++...+.
T Consensus 557 t~Ad~VI--------iyD~----------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 557 ATADIVI--------LYDS----------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred hhCCEEE--------EeCC----------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 9999999 5554 3456678999999999885 46899999887643
No 124
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2.4e-12 Score=144.65 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=117.1
Q ss_pred ceEEEecccC--ChHHHHhhhCCCCEEeeCCceecee------EEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCC
Q 037717 197 LKLLISSATL--DAEKFSDYFGSAPIFKIPGRRYPVE------LFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTG 268 (582)
Q Consensus 197 ~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~~v~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~ 268 (582)
-|+-+||.|. ....|.+.++ -+|+.||... |+. ..|.. ......+.+..+...+ ..+.++||||+|
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnr-P~~R~D~~d~vy~t--~~eK~~Ali~~I~~~~--~~grpVLIft~S 607 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYK-LDVVVIPTNK-PIVRKDMDDLVYKT--RREKYNAIVLKVEELQ--KKGQPVLVGTAS 607 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhC-CcEEECCCCC-CcceecCCCeEecC--HHHHHHHHHHHHHHHh--hCCCCEEEEeCc
Confidence 3778888888 5566666554 5677776542 221 11211 1223333333333333 346899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC---CeeEE-----
Q 037717 269 QDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID---GIKYV----- 340 (582)
Q Consensus 269 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp---~v~~V----- 340 (582)
.+.++.+++.|.. .++....+|+ .+.+|+..+..+..+.-.|+||||+|++|+||+ +|..|
T Consensus 608 ve~sE~Ls~~L~~---------~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~V 676 (1025)
T PRK12900 608 VEVSETLSRMLRA---------KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFI 676 (1025)
T ss_pred HHHHHHHHHHHHH---------cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCcee
Confidence 9999999999987 4667778897 588888889999999999999999999999999 45333
Q ss_pred EeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 341 IHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 341 ID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
|. ...|-|+-.+.||.|||||.|. |.+..+++.++
T Consensus 677 Ig------------------terhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 677 LG------------------SERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred eC------------------CCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 42 2345677789999999999995 99998888754
No 125
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.39 E-value=1e-11 Score=138.03 Aligned_cols=300 Identities=17% Similarity=0.203 Sum_probs=176.0
Q ss_pred CCCChHHHHHHHHHHhCC----CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCc
Q 037717 63 TLPIYPFWEELLQAVSGY----PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~----~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
.+.+...|..+.+.+.+. ...++.|-||||||-..-+++.+ |--.+.-++..|+...+|..++.
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~v 275 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAV 275 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhh
Confidence 355667777777777655 78999999999999544443332 88888889999999888866543
Q ss_pred EEeE---EEee---cccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCC------cchhH-HHHHHHHHHhh
Q 037717 127 EVGY---SIRF---EDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERT------LSTDN-LFGLLKDLINY 193 (582)
Q Consensus 127 ~vgy---~v~~---~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~------~~~d~-ll~~lk~~~~~ 193 (582)
.-.. +-|. ....+...+|+++|---+. .-+.++++|||||=|+-+ +.... -+++++. .
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra---~ 346 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA---K 346 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH---H
Confidence 2110 0011 1123457789999854332 128899999999999432 22221 1222222 2
Q ss_pred CCCceEEEecccCChHHHHhhhCC-CCEEeeCCcee---ceeEEEecCC----chh--HHHHHHHHHHHHHhcCCCCCEE
Q 037717 194 RPDLKLLISSATLDAEKFSDYFGS-APIFKIPGRRY---PVELFYTKAP----EVD--YIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~f~~-~~v~~i~gr~~---~v~~~~~~~~----~~~--~~~~~~~~~~~i~~~~~~g~iL 263 (582)
.-+..+|+-|||+..+.+.+--.+ -..+....|.. +-.+...... ..+ +-...+..+-+.. +.+.++|
T Consensus 347 ~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~l 424 (730)
T COG1198 347 KENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVL 424 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEE
Confidence 247899999999988888776433 12233333322 2222222110 000 1111111111111 1234555
Q ss_pred EEcCCHH------------------------------------------------------------HHHHHHHHHHHhh
Q 037717 264 VFLTGQD------------------------------------------------------------EIERAEEILKQRT 283 (582)
Q Consensus 264 VFl~~~~------------------------------------------------------------~i~~~~~~L~~~~ 283 (582)
+|+|.+. .++.+++.|.+.+
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 5554332 3344444454433
Q ss_pred hccCCCCCCeEEEEecCCCCHHH--HHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCccc--
Q 037717 284 RGLGTKIAELIICPIYANLPTEL--QAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMES-- 359 (582)
Q Consensus 284 ~~~~~~~~~~~v~~lh~~l~~~~--r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~-- 359 (582)
|+..+..+-++.+... -+..+..|.+|+..|||-|...+-|.|.|+++.|. .-|...++..
T Consensus 505 -------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVg--------vl~aD~~L~~~D 569 (730)
T COG1198 505 -------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVG--------VLDADTGLGSPD 569 (730)
T ss_pred -------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEE--------EEechhhhcCCC
Confidence 5667777777665433 34567889999999999999999999999999876 2222222111
Q ss_pred ccccccCHHhHHHHhcCCCCC-CCCeEEEe
Q 037717 360 LLVNPISKASANQRTGLSERT-GPGKCFRL 388 (582)
Q Consensus 360 l~~~~~S~~~~~QR~GRaGR~-~~G~~~~L 388 (582)
+...--+-.-+.|=+|||||. .+|..+.-
T Consensus 570 fRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 570 FRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred cchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 111112233578999999998 56876653
No 126
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.39 E-value=5.1e-11 Score=134.75 Aligned_cols=218 Identities=20% Similarity=0.148 Sum_probs=128.0
Q ss_pred CccEEEEChHHHHHHHHcCC--C--C----CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHH
Q 037717 141 KTVLKYMTDCMLLREIVIEP--S--L----ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFS 212 (582)
Q Consensus 141 ~t~I~~~T~g~Ll~~l~~~~--~--l----~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~ 212 (582)
...+.|||...++.....-. . + -.-++|||||+|-.+..+-.++..+-.+. ..-..++++||||+.+....
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~-~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLA-GLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHH-HHcCCCEEEEeCCCCHHHHH
Confidence 45799999999887663221 1 1 12489999999976665544433333322 33578999999999654433
Q ss_pred h----hhCCCC----EEeeCCceeceeEE---------------------------------------------EecCCc
Q 037717 213 D----YFGSAP----IFKIPGRRYPVELF---------------------------------------------YTKAPE 239 (582)
Q Consensus 213 ~----~f~~~~----v~~i~gr~~~v~~~---------------------------------------------~~~~~~ 239 (582)
. |..+.. ....+++..++-.- ..+.+.
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 3 321100 00011111111000 001110
Q ss_pred -------hhHHHHHHHHHHHHHhcC----C-CCC----EEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCC
Q 037717 240 -------VDYIEAAIVTALQIHVNE----P-TGD----ILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLP 303 (582)
Q Consensus 240 -------~~~~~~~~~~~~~i~~~~----~-~g~----iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 303 (582)
..+.......++.+|... + .|+ -||=+.+.+.+-.+++.|.......+ ..+.++.+||..+
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~---~~i~~~~yHSr~~ 797 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEK---YQIHLCCYHAQDP 797 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccC---CceeEEEecccCh
Confidence 012222333444444321 1 222 25666777777778877776543222 4577899999998
Q ss_pred HHHHHHhcCC--------------------------CCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCc
Q 037717 304 TELQAKIFEP--------------------------TPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGM 357 (582)
Q Consensus 304 ~~~r~~v~~~--------------------------~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~ 357 (582)
...|..+++. ...+...|||||.+.|.|+|++ .+.+|
T Consensus 798 l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~---------------- 860 (1110)
T TIGR02562 798 LLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI---------------- 860 (1110)
T ss_pred HHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee----------------
Confidence 7777666532 1135779999999999999988 55544
Q ss_pred ccccccccCHHhHHHHhcCCCCCCCC
Q 037717 358 ESLLVNPISKASANQRTGLSERTGPG 383 (582)
Q Consensus 358 ~~l~~~~~S~~~~~QR~GRaGR~~~G 383 (582)
+.+.+..+.+||+||..|.+..
T Consensus 861 ----~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 861 ----ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred ----eccCcHHHHHHHhhcccccccC
Confidence 3456777899999999999853
No 127
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.38 E-value=3.2e-11 Score=134.04 Aligned_cols=268 Identities=18% Similarity=0.199 Sum_probs=176.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh---hcc---------chHHHHHHHHHHHHHHhCC
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY---LYE---------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~---ll~---------P~r~~a~~~a~~va~~~~~ 122 (582)
.+..+.-...+.|..|..+..-+..|+..-++||||.||||....+ +.. |++.++.|++.++.+....
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 3344444566899999999999999999999999999999755433 331 9999999999988754311
Q ss_pred --ccCcEEeEEEeecc---------cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeeccc---CCCcchhHHHHH--
Q 037717 123 --KLGHEVGYSIRFED---------CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQ---ERTLSTDNLFGL-- 186 (582)
Q Consensus 123 --~~g~~vgy~v~~~~---------~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H---eR~~~~d~ll~~-- 186 (582)
.+...++|+-.... -.+.+-+|+++|...|...+..-.. -++++|++|.++ ..+-+.|-+|.+
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcC
Confidence 22223334432211 1235689999999998876642221 479999999999 222222222221
Q ss_pred --------------HHHHH----------------------hhCCCceEEEecccCCh-----HHHHhhhCCCCEEeeCC
Q 037717 187 --------------LKDLI----------------------NYRPDLKLLISSATLDA-----EKFSDYFGSAPIFKIPG 225 (582)
Q Consensus 187 --------------lk~~~----------------------~~~~~~kii~~SAT~~~-----~~~~~~f~~~~v~~i~g 225 (582)
++..+ +....-.+|++|||..+ ..|.+.+|-. +.+
T Consensus 231 f~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe----vG~ 306 (1187)
T COG1110 231 FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE----VGS 306 (1187)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----cCc
Confidence 11111 12234678999999933 4466666522 111
Q ss_pred c---eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCC---HHHHHHHHHHHHHhhhccCCCCCCeEEEEec
Q 037717 226 R---RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTG---QDEIERAEEILKQRTRGLGTKIAELIICPIY 299 (582)
Q Consensus 226 r---~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~---~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh 299 (582)
. ..++.-.|...+ ....++.+...- +...|||+|. ++.++++++.|.+ .++.+..+|
T Consensus 307 ~~~~LRNIvD~y~~~~-------~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~---------~Gi~a~~~~ 369 (1187)
T COG1110 307 GGEGLRNIVDIYVESE-------SLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRS---------HGINAELIH 369 (1187)
T ss_pred cchhhhheeeeeccCc-------cHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHh---------cCceEEEee
Confidence 1 123333344331 122222332222 3458999998 8888888888887 578899999
Q ss_pred CCCCHHHHHHhcCCCCCCCcEEEEeC----CCCccccccCC-eeEEEeCCcccce
Q 037717 300 ANLPTELQAKIFEPTPERARKVVLAT----NIAETSLTIDG-IKYVIHPGFAKVK 349 (582)
Q Consensus 300 ~~l~~~~r~~v~~~~~~g~~kVivaT----~iae~gidIp~-v~~VID~g~~k~~ 349 (582)
+. .++.++.|..|+..|+|.. .++-+|||+|. ++|+|=.|.+|.+
T Consensus 370 a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 370 AE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred cc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 84 3678899999999999864 58899999995 6799999998643
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.37 E-value=1.1e-10 Score=135.94 Aligned_cols=183 Identities=18% Similarity=0.224 Sum_probs=108.8
Q ss_pred ceEEEecccCC----hHHHHhhhCCCCE--EeeCCceec----eeEEEe---cC----CchhHHHHHHHHHHHHHhcCCC
Q 037717 197 LKLLISSATLD----AEKFSDYFGSAPI--FKIPGRRYP----VELFYT---KA----PEVDYIEAAIVTALQIHVNEPT 259 (582)
Q Consensus 197 ~kii~~SAT~~----~~~~~~~f~~~~v--~~i~gr~~~----v~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~~ 259 (582)
-.+|++|||+. .+.+.+.+|-... ..+...+|+ ..++.. +. ...+|.+.....+..+... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 36789999994 3556666663221 122122222 112211 11 1234555555555555443 35
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCee-
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIK- 338 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~- 338 (582)
|++|||+++.+..+.+++.|...... .++.+.. .+.. ..|.++++.|++|...|+++|+.+..|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999998753211 1222222 2222 4678889999999999999999999999999876
Q ss_pred -EEEeCCcccceeecCC----------CCcccc--cccccCHHhHHHHhcCCCCCCC--CeEEEe
Q 037717 339 -YVIHPGFAKVKSYNPK----------TGMESL--LVNPISKASANQRTGLSERTGP--GKCFRL 388 (582)
Q Consensus 339 -~VID~g~~k~~~yd~~----------~~~~~l--~~~~~S~~~~~QR~GRaGR~~~--G~~~~L 388 (582)
.||=.|++-...-||. .|-+.+ ...|.......|-+||.=|... |..+.|
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 4554665422111110 011111 1123344568899999999875 665555
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=5.8e-11 Score=130.26 Aligned_cols=118 Identities=24% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEE
Q 037717 243 IEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVV 322 (582)
Q Consensus 243 ~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVi 322 (582)
..+.+..+...|. .+.+|||.+.+.++.+.+++.|.+. ++....+++.-..+|-+.|-++-+.| .|.
T Consensus 413 ~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~g--aVT 479 (764)
T PRK12326 413 NDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKYG--AVT 479 (764)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCCC--cEE
Confidence 3445555555554 4689999999999999999999873 44455566653333333344443444 689
Q ss_pred EeCCCCccccccC---------------CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEE
Q 037717 323 LATNIAETSLTID---------------GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCF 386 (582)
Q Consensus 323 vaT~iae~gidIp---------------~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~ 386 (582)
||||.|.+|.||. +=-+||= ...+-|+--=.|-.|||||.| ||.+-
T Consensus 480 IATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIg------------------TerheSrRID~QLrGRaGRQGDpGss~ 541 (764)
T PRK12326 480 VSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIG------------------TGRHRSERLDNQLRGRAGRQGDPGSSV 541 (764)
T ss_pred EEecCCCCccCeecCCCcccchHHHHHcCCcEEEe------------------ccCCchHHHHHHHhcccccCCCCCcee
Confidence 9999999999986 2224552 224556666789999999999 48765
Q ss_pred EeeCh
Q 037717 387 RLYTL 391 (582)
Q Consensus 387 ~L~~~ 391 (582)
.+.+-
T Consensus 542 f~lSl 546 (764)
T PRK12326 542 FFVSL 546 (764)
T ss_pred EEEEc
Confidence 55543
No 130
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.36 E-value=2.5e-11 Score=136.37 Aligned_cols=294 Identities=16% Similarity=0.096 Sum_probs=192.4
Q ss_pred hCCCeEEEECCCCCchhchHhhhhcc-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec----ccCCCCc
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLYE-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE----DCTSDKT 142 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~----~~~~~~t 142 (582)
+.|++++|.+|+|||||.....+++. |....+...+..+...++.-.|..+-- ..++ -+.-...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~-l~ge~s~~lkl~~~~ 1235 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVK-LTGETSLDLKLLQKG 1235 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEe-cCCccccchHHhhhc
Confidence 46889999999999999888888776 666666666555555544444433311 1112 1223578
Q ss_pred cEEEEChHHHHHHHHcCCCCCCCCceEeecccCCC----cchhHHHHHHHHHHhhCCCceEEEecccC-ChHHHHhhhCC
Q 037717 143 VLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERT----LSTDNLFGLLKDLINYRPDLKLLISSATL-DAEKFSDYFGS 217 (582)
Q Consensus 143 ~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~----~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~~~~~~f~~ 217 (582)
+++++||+..-.. ...+++++.|.||.|.-| ...+.+.+........-+++|++.+|-.+ |+..+ -++..
T Consensus 1236 ~vii~tpe~~d~l----q~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~-ig~s~ 1310 (1674)
T KOG0951|consen 1236 QVIISTPEQWDLL----QSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL-IGASS 1310 (1674)
T ss_pred ceEEechhHHHHH----hhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-ccccc
Confidence 9999999976433 157889999999999443 33344444222223345689999999998 88888 34444
Q ss_pred CCEEee--CCceeceeEEEecCCchhHHHHH-------HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhcc--
Q 037717 218 APIFKI--PGRRYPVELFYTKAPEVDYIEAA-------IVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGL-- 286 (582)
Q Consensus 218 ~~v~~i--~gr~~~v~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~-- 286 (582)
+.++.. ..|..|.+++........+.... ...+.+ |. ..+.+.+||+|+++.+..++..+-..+..-
T Consensus 1311 ~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~-~a-~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1311 SGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR-HA-GNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH-Hh-cCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 556554 45667777765443322222111 111111 22 246789999999999998887654322110
Q ss_pred ----------CCCC-CCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCC
Q 037717 287 ----------GTKI-AELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKT 355 (582)
Q Consensus 287 ----------~~~~-~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~ 355 (582)
...+ ..+....=|-+|+..++..+-..|..|.+.|.|...- -.|+....--+|| ..+..||.+.
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv----mgt~~ydg~e 1463 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV----MGTQYYDGKE 1463 (1674)
T ss_pred HHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE----ecceeecccc
Confidence 0000 1111111189999999999999999999998877655 7777777555666 6677898876
Q ss_pred CcccccccccCHHhHHHHhcCCCCCCCCeEEEeeC
Q 037717 356 GMESLLVNPISKASANQRTGLSERTGPGKCFRLYT 390 (582)
Q Consensus 356 ~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~ 390 (582)
. ...+.+.++..|+.|+|.| .|+|..+..
T Consensus 1464 ~----~~~~y~i~~ll~m~G~a~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1464 H----SYEDYPIAELLQMVGLASG--AGKCVIMCH 1492 (1674)
T ss_pred c----ccccCchhHHHHHhhhhcC--CccEEEEec
Confidence 5 3346888999999999998 577776654
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.36 E-value=1.5e-11 Score=116.92 Aligned_cols=153 Identities=25% Similarity=0.180 Sum_probs=104.3
Q ss_pred CCCChHHHHHHHHHHhCC-CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 63 TLPIYPFWEELLQAVSGY-PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~-~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
..+..++|.+++..+... +++++.|+||||||+.+..++++ |++.++.+...++........+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 456788999999999988 99999999999999866555443 889989888888776654321111
Q ss_pred EeEEEeecc------cCCCCccEEEEChHHHHHHHHcCC-CCCCCCceEeecccCCCc--chhHHHHHHHHHHhhCCCce
Q 037717 128 VGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEP-SLESYSVLIVDEAQERTL--STDNLFGLLKDLINYRPDLK 198 (582)
Q Consensus 128 vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~-~l~~~~~vViDE~HeR~~--~~d~ll~~lk~~~~~~~~~k 198 (582)
..+.-.... ......+++++|++.+.+.+.... ....++++|+||+|.... ..+.+..++.. ..+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~ 162 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL---LPKNVQ 162 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh---CCccce
Confidence 111101000 112233999999999999887765 477899999999995442 22333333322 246789
Q ss_pred EEEecccC--ChHHHHhhhCCC
Q 037717 199 LLISSATL--DAEKFSDYFGSA 218 (582)
Q Consensus 199 ii~~SAT~--~~~~~~~~f~~~ 218 (582)
++++|||+ +...+...+...
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~ 184 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLND 184 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCC
Confidence 99999999 566665554433
No 132
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.30 E-value=2.1e-11 Score=108.96 Aligned_cols=123 Identities=33% Similarity=0.324 Sum_probs=85.0
Q ss_pred CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccC------CC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT------SD 140 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~------~~ 140 (582)
+++++.||||||||+++..++.. |++.++.+....+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 35899999999999877766443 9999999988887776643 33444444433333 45
Q ss_pred CccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 141 KTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 141 ~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
...++++|++.+.+.+..... ...+++|||||+|.-......... ........+..+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 789999999999888876543 667999999999933222111111 22233345678999999996
No 133
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.30 E-value=3.8e-12 Score=103.42 Aligned_cols=72 Identities=32% Similarity=0.406 Sum_probs=65.9
Q ss_pred CeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHH
Q 037717 292 ELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASAN 371 (582)
Q Consensus 292 ~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~ 371 (582)
++.+..+||++++++|..+++.|.+|..+|+++|+++++|+|+|+++.||..+ .|.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~------------------~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD------------------LPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeC------------------CCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999433 367889999
Q ss_pred HHhcCCCCCC
Q 037717 372 QRTGLSERTG 381 (582)
Q Consensus 372 QR~GRaGR~~ 381 (582)
||+||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 134
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.25 E-value=3.6e-11 Score=106.79 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=83.5
Q ss_pred hCCCeEEEECCCCCchhch-Hhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec-ccCCCCcc
Q 037717 78 SGYPVLAIVGETGSGKTTQ-IPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE-DCTSDKTV 143 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~-ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~-~~~~~~t~ 143 (582)
.+++..+|-..+|||||+. +|.++.+ |+|++|.++.+.+. |..+.+....- .....+.-
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFGSSI 74 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----SSSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccCCCc
Confidence 3567889999999999975 7776554 99999887766552 22244432221 22345678
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
|.+||.+.+.+.+.+...+.+|++||+||+|--+..+-...+.++.... ....++|.||||+
T Consensus 75 i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATP 136 (148)
T PF07652_consen 75 IDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATP 136 (148)
T ss_dssp EEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-
T ss_pred ccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCC
Confidence 9999999999988875559999999999999777777677777777644 3568999999999
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=5.2e-10 Score=125.73 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=74.3
Q ss_pred HhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchH--hhhhcc----------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 60 ERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQI--PQYLYE----------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 60 ~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~i--p~~ll~----------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
.|+.|-+.+|--+++..+.=++--|....||+|||..+ |.++.- |...+|..-+..+...+. .+|..
T Consensus 75 ~~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~ 153 (913)
T PRK13103 75 GKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE-FLGLS 153 (913)
T ss_pred HHHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCE
Confidence 35566677776678877665666678999999999443 433221 999999888777766543 45667
Q ss_pred EeEEEeeccc----CCCCccEEEEChHHH-----HHHHHc---CCCCCCCCceEeeccc
Q 037717 128 VGYSIRFEDC----TSDKTVLKYMTDCML-----LREIVI---EPSLESYSVLIVDEAQ 174 (582)
Q Consensus 128 vgy~v~~~~~----~~~~t~I~~~T~g~L-----l~~l~~---~~~l~~~~~vViDE~H 174 (582)
||.-...... ..-.++|+|+|..-+ .+.+.. +....++.++||||+|
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 7753221110 112479999998765 333321 1125889999999999
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=2.6e-09 Score=119.12 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEE
Q 037717 244 EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVL 323 (582)
Q Consensus 244 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViv 323 (582)
.+.+..+...| ..+.+|||.+.+.+..+.+++.|.+. ++..-.+++.-...|-+.|-++-+. -.|.|
T Consensus 413 ~Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTI 479 (925)
T PRK12903 413 KAVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQK--GAITI 479 (925)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCCC--CeEEE
Confidence 34444455555 34789999999999999999999873 4444445554222333333333333 36899
Q ss_pred eCCCCccccccCCee--------EEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeC
Q 037717 324 ATNIAETSLTIDGIK--------YVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYT 390 (582)
Q Consensus 324 aT~iae~gidIp~v~--------~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~ 390 (582)
|||.|.+|.||.--. +||-+. .+-|+--=.|-.|||||.| ||.+-.+.+
T Consensus 480 ATNMAGRGTDI~Lg~~V~~~GGLhVIgTe------------------rheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 480 ATNMAGRGTDIKLSKEVLELGGLYVLGTD------------------KAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred ecccccCCcCccCchhHHHcCCcEEEecc------------------cCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 999999999987222 666222 2344444579999999999 486543333
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.16 E-value=9.2e-09 Score=118.58 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCc
Q 037717 240 VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERAR 319 (582)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~ 319 (582)
.+|.+.....+..+. ..+|++||+++|.+..+.+++.|... ...++.-..+.+ +.++.+.|+++..
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~l~Qg~~~~---~~~l~~~F~~~~~ 695 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSHLAQEKNGT---AYNIKKRFDRGEQ 695 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcEEEeCCCcc---HHHHHHHHHcCCC
Confidence 356555555555544 34689999999999999999888642 122222121222 3456777888888
Q ss_pred EEEEeCCCCccccccCC--eeEEEeCCcccceeecCC----------CCccccc--ccccCHHhHHHHhcCCCCCCC--C
Q 037717 320 KVVLATNIAETSLTIDG--IKYVIHPGFAKVKSYNPK----------TGMESLL--VNPISKASANQRTGLSERTGP--G 383 (582)
Q Consensus 320 kVivaT~iae~gidIp~--v~~VID~g~~k~~~yd~~----------~~~~~l~--~~~~S~~~~~QR~GRaGR~~~--G 383 (582)
.|+++|...-.|||+|+ ...||=.+++=....||- .|-+.+. ..|.-.-.+.|-+||.=|... |
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999973 444554555422121210 1111111 123334568899999999874 7
Q ss_pred eEEEeeCh
Q 037717 384 KCFRLYTL 391 (582)
Q Consensus 384 ~~~~L~~~ 391 (582)
..+.|=++
T Consensus 776 vv~ilD~R 783 (820)
T PRK07246 776 AVLILDRR 783 (820)
T ss_pred EEEEECCc
Confidence 76655433
No 138
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.14 E-value=1.7e-09 Score=121.04 Aligned_cols=113 Identities=21% Similarity=0.186 Sum_probs=71.0
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhcc----------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLYE----------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll~----------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
++.+-+.+|--+++.++.-++--|....||.|||. .+|.++.- +...+|..-+..+..-+ ..+|.+|
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy-~~LGLsv 148 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY-RFLGLTV 148 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH-HHcCCce
Confidence 45555666666688777767777889999999994 44555432 66777665555443322 3456677
Q ss_pred eEEEeeccc----CCCCccEEEEChH-----HHHHHHHcCC---CCCCCCceEeeccc
Q 037717 129 GYSIRFEDC----TSDKTVLKYMTDC-----MLLREIVIEP---SLESYSVLIVDEAQ 174 (582)
Q Consensus 129 gy~v~~~~~----~~~~t~I~~~T~g-----~Ll~~l~~~~---~l~~~~~vViDE~H 174 (582)
|......+. ..=.++|+|+|.. .|.+.+...+ ....+.+.|||||+
T Consensus 149 g~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 149 GLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 754321111 1125689999984 5555553222 26778999999998
No 139
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.04 E-value=2.9e-10 Score=107.37 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=84.5
Q ss_pred CCChHHHHHHHHHHhC-------CCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 64 LPIYPFWEELLQAVSG-------YPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 64 lPi~~~~~~il~~i~~-------~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
+.++++|.+++..+.. ++.+++.+|||||||..+-.++.+ |+..++.+....+......... .
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~-~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYN-F 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEE-E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhh-h
Confidence 3468899999888873 689999999999999665544333 9998888887777332221110 0
Q ss_pred EeE-----------------EEeecccCCCCccEEEEChHHHHHHHHcCC------------CCCCCCceEeecccCCCc
Q 037717 128 VGY-----------------SIRFEDCTSDKTVLKYMTDCMLLREIVIEP------------SLESYSVLIVDEAQERTL 178 (582)
Q Consensus 128 vgy-----------------~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~------------~l~~~~~vViDE~HeR~~ 178 (582)
.+. .............+.+.|...+........ ....+++||+||+|.-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~- 159 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYP- 159 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTH-
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcC-
Confidence 000 000001123467899999999887764321 14567999999999333
Q ss_pred chhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 179 STDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 179 ~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.... .+.++. .+...+|+||||+
T Consensus 160 ~~~~----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 160 SDSS----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp HHHH----HHHHHH-SSCCEEEEEESS-
T ss_pred CHHH----HHHHHc-CCCCeEEEEEeCc
Confidence 2221 233333 5778899999997
No 140
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.03 E-value=3.8e-09 Score=109.30 Aligned_cols=278 Identities=17% Similarity=0.188 Sum_probs=153.6
Q ss_pred ChHHHHHHHHHHhCC---CeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcEEeEEEe
Q 037717 66 IYPFWEELLQAVSGY---PVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR 133 (582)
Q Consensus 66 i~~~~~~il~~i~~~---~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~ 133 (582)
+.+||+.-+..+-.| +.-||+-|-|+|||..-..+... -.-+.+.|..+.+..-....-...+.+...
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd 382 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSD 382 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEeecc
Confidence 788999988877654 46788899999999332222111 333445555554443322222222222111
Q ss_pred ecccCCCCccEEEEChHHHHHHH----HcCC-----CCCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEec
Q 037717 134 FEDCTSDKTVLKYMTDCMLLREI----VIEP-----SLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISS 203 (582)
Q Consensus 134 ~~~~~~~~t~I~~~T~g~Ll~~l----~~~~-----~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~S 203 (582)
..+....++.|++.|..|+-..- .... .-...+++|+||+|- +-. .++++++..- .+.| ++++
T Consensus 383 ~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv--vPA----~MFRRVlsiv~aHcK-LGLT 455 (776)
T KOG1123|consen 383 AKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV--VPA----KMFRRVLSIVQAHCK-LGLT 455 (776)
T ss_pred ccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc--chH----HHHHHHHHHHHHHhh-ccce
Confidence 11122346789999987774211 0000 134689999999992 111 1223222211 1223 6789
Q ss_pred ccC--ChHHHHh--hhCCCCEEee-------CCceecee--EEEecCCch---hHHH-----------------HHHHHH
Q 037717 204 ATL--DAEKFSD--YFGSAPIFKI-------PGRRYPVE--LFYTKAPEV---DYIE-----------------AAIVTA 250 (582)
Q Consensus 204 AT~--~~~~~~~--~f~~~~v~~i-------~gr~~~v~--~~~~~~~~~---~~~~-----------------~~~~~~ 250 (582)
||+ .-+++.+ |+-+.++... .|..-.|. ..+.+.... .|+. .+..-+
T Consensus 456 ATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfL 535 (776)
T KOG1123|consen 456 ATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFL 535 (776)
T ss_pred eEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHH
Confidence 998 3333333 2222211111 11111111 112221111 1221 122334
Q ss_pred HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC-CcEEEEeCCCCc
Q 037717 251 LQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-ARKVVLATNIAE 329 (582)
Q Consensus 251 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kVivaT~iae 329 (582)
++.|.. .+.+||||....-.....+-.|.+ -.+||..++.||.+|++.|.-+ .++-|+-+-++.
T Consensus 536 I~~HE~-RgDKiIVFsDnvfALk~YAikl~K--------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgD 600 (776)
T KOG1123|consen 536 IKFHER-RGDKIIVFSDNVFALKEYAIKLGK--------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGD 600 (776)
T ss_pred HHHHHh-cCCeEEEEeccHHHHHHHHHHcCC--------------ceEECCCchhHHHHHHHhcccCCccceEEEeeccC
Confidence 444544 467899997665544444333322 1469999999999999999754 568889999999
Q ss_pred cccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC
Q 037717 330 TSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP 382 (582)
Q Consensus 330 ~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 382 (582)
+|+|+|..++.|... . ---|+-+-.||.||.-|...
T Consensus 601 tSiDLPEAnvLIQIS--------S---------H~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 601 TSIDLPEANVLIQIS--------S---------HGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred ccccCCcccEEEEEc--------c---------cccchHHHHHHHHHHHHHhh
Confidence 999999999999321 1 12466678899998888763
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=3.5e-08 Score=110.61 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=72.2
Q ss_pred HhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhhhcc----------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 60 ERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQYLYE----------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 60 ~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~ll~----------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
.|+.|-+.+|--+++.++.=++--|....||-|||.. +|.|+.- +...+|..=++.+...+ ..+|.+
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy-~~LGLt 156 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH-RFLGLS 156 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH-HHhCCe
Confidence 4567777777777888876666678899999999943 4555432 55555544433333222 245777
Q ss_pred EeEEEeecc----cCCCCccEEEEChHHH-----HHHHHcCC---CCCCCCceEeeccc
Q 037717 128 VGYSIRFED----CTSDKTVLKYMTDCML-----LREIVIEP---SLESYSVLIVDEAQ 174 (582)
Q Consensus 128 vgy~v~~~~----~~~~~t~I~~~T~g~L-----l~~l~~~~---~l~~~~~vViDE~H 174 (582)
||......+ +..=.++|+|+|..-| .+.+.... ....+.+.|||||+
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 776432111 1112689999998554 66665432 26888999999998
No 142
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.90 E-value=2.1e-08 Score=105.12 Aligned_cols=174 Identities=17% Similarity=0.120 Sum_probs=123.2
Q ss_pred CceEEEecccCChHHHHhhhCC--CCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Q 037717 196 DLKLLISSATLDAEKFSDYFGS--APIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIE 273 (582)
Q Consensus 196 ~~kii~~SAT~~~~~~~~~f~~--~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 273 (582)
..|+|..|||+..-.+..-=+. ..++...|-.-|.-. -.|....++..+..+-... ..+..+||-+-|++.++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ie---vRp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIE---VRPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCcee---eecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHH
Confidence 3589999999955544432111 112222232222111 1122233344333333322 23578999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecC
Q 037717 274 RAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNP 353 (582)
Q Consensus 274 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~ 353 (582)
.+.+.|.+ .++.+..+||++..-+|.+|+...+.|...|+|--|.+-.|+|+|.|..|- ..|.
T Consensus 461 dLT~Yl~e---------~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA--------IlDA 523 (663)
T COG0556 461 DLTEYLKE---------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA--------ILDA 523 (663)
T ss_pred HHHHHHHh---------cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE--------Eeec
Confidence 99999998 589999999999999999999999999999999999999999999999988 5554
Q ss_pred CCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhh
Q 037717 354 KTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRI 397 (582)
Q Consensus 354 ~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~ 397 (582)
.. ....-|-.+.+|-+|||.|--.|+++ ||...--..+
T Consensus 524 DK-----eGFLRse~SLIQtIGRAARN~~GkvI-lYAD~iT~sM 561 (663)
T COG0556 524 DK-----EGFLRSERSLIQTIGRAARNVNGKVI-LYADKITDSM 561 (663)
T ss_pred Cc-----cccccccchHHHHHHHHhhccCCeEE-EEchhhhHHH
Confidence 32 23345777899999999999999876 5554433333
No 143
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.90 E-value=5.4e-08 Score=105.62 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=87.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC---CcEEEEeCCCCcccccc
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER---ARKVVLATNIAETSLTI 334 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g---~~kVivaT~iae~gidI 334 (582)
.+..||||-.=..-. +.|.+.+. ..++..+-+.|+.+.++|...++.|... +.-.+++|-+...|||+
T Consensus 486 ~GhRVLIFSQmt~mL----DILeDyc~-----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 486 QGHRVLIFSQMTRML----DILEDYCM-----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred CCCeEEEeHHHHHHH----HHHHHHHH-----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 356799995433333 34444331 2578899999999999999888777433 44567999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
-..+.|| .||...+ |-.--++.+|+-|.|...+=++|||.|++..+.
T Consensus 557 ~aADtVI--------lyDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 557 TAADTVI--------LYDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccEEE--------EecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 9999999 7776655 333447899999999999999999999987654
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.86 E-value=5.8e-07 Score=105.61 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCc
Q 037717 240 VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERAR 319 (582)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~ 319 (582)
..|.......+..+... .+|.+|||+++.+..+.+++.|...... .++.+.. . ++....|.++.+.|+.+..
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----EGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccc-----cCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 35555555555555433 4689999999999999999998763210 1222222 1 2222346777888888888
Q ss_pred EEEEeCCCCccccccCCe--eEEEeCCcccceeecC----------CCCcccc--cccccCHHhHHHHhcCCCCCCC--C
Q 037717 320 KVVLATNIAETSLTIDGI--KYVIHPGFAKVKSYNP----------KTGMESL--LVNPISKASANQRTGLSERTGP--G 383 (582)
Q Consensus 320 kVivaT~iae~gidIp~v--~~VID~g~~k~~~yd~----------~~~~~~l--~~~~~S~~~~~QR~GRaGR~~~--G 383 (582)
.|+++|.....|||+|+- +.||=.+++=...-|| ..|-+.+ ...|...-...|-+||.=|... |
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 999999999999999974 6676555532111011 0011111 1123445567899999988874 7
Q ss_pred eEEEeeC
Q 037717 384 KCFRLYT 390 (582)
Q Consensus 384 ~~~~L~~ 390 (582)
..+.|=+
T Consensus 886 ~v~ilD~ 892 (928)
T PRK08074 886 TVFVLDR 892 (928)
T ss_pred EEEEecC
Confidence 6665533
No 145
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.81 E-value=3e-07 Score=102.25 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=156.8
Q ss_pred hCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCC-CCcc
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS-DKTV 143 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~-~~t~ 143 (582)
....+.+|-+|.||||||.+-.++.+ -|+.++.+++.++.... +...+-|.--.+.... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccccccC
Confidence 45678999999999999988777633 68888888888876531 1122333221111111 1223
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeeccc-------CCC-cchhHHHHHHHHHHhhCCCceEEEecccCCh---HHHH
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQ-------ERT-LSTDNLFGLLKDLINYRPDLKLLISSATLDA---EKFS 212 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H-------eR~-~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~---~~~~ 212 (582)
-++++-+.|.+.. .+.+.+|++|||||+- ..+ -.......+++.+++. .-++|+|-||++. +.++
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tvdFl~ 199 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTVDFLA 199 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHHHHHH
Confidence 4455555565542 4458889999999996 111 1223445566666553 4589999999954 3344
Q ss_pred hhhCCCCEEeeCCc----eece-eEEEecCCchhHH--------------------------------HHHHHHHHHHHh
Q 037717 213 DYFGSAPIFKIPGR----RYPV-ELFYTKAPEVDYI--------------------------------EAAIVTALQIHV 255 (582)
Q Consensus 213 ~~f~~~~v~~i~gr----~~~v-~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~ 255 (582)
..-++.++..+.+. .|.- ...+.+.-..+.+ .......+...
T Consensus 200 ~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~- 278 (824)
T PF02399_consen 200 SCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR- 278 (824)
T ss_pred HhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH-
Confidence 44344454433322 1110 0111110000000 00011111111
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC
Q 037717 256 NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID 335 (582)
Q Consensus 256 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp 335 (582)
-..+.+|-||++|....+.+++..... .-.++.+.|.-+.. .+.+ =++.+|++=|++...|+++.
T Consensus 279 L~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 279 LNAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HhCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccc
Confidence 123567889999999888888877663 34566667765544 2321 34578999999999999987
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChh
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLH 392 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~ 392 (582)
...+=--+++.|... .| .+..+..|+.||+-.......|.-+...
T Consensus 344 ~~HF~~~f~yvk~~~----~g--------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMS----YG--------PDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred hhhceEEEEEecCCC----CC--------CcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 543211111122111 11 3345689999999877766666655543
No 146
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.74 E-value=4.3e-07 Score=99.23 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=95.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCc--EEEEeCCCCccccccCC
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERAR--KVVLATNIAETSLTIDG 336 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~--kVivaT~iae~gidIp~ 336 (582)
+..+|+|-.++..++.+...|.. ..++..+.+.|..+...|..+.+.|.++.- -.+++|-+...|+|+-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~--------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR--------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh--------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 45899999999988888888774 158889999999999999999999987764 35789999999999999
Q ss_pred eeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhh
Q 037717 337 IKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNY 394 (582)
Q Consensus 337 v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~ 394 (582)
.+-|| .|||..+ |.+-.++.-|+=|.|....=..|||.+....
T Consensus 618 AnRVI--------IfDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 618 ANRVI--------IFDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred CceEE--------EECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99999 8888776 4556678899999998888889999876543
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.62 E-value=1.7e-05 Score=88.37 Aligned_cols=137 Identities=15% Similarity=0.037 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCC----C
Q 037717 242 YIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPE----R 317 (582)
Q Consensus 242 ~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~----g 317 (582)
|.+.....+..+... .+|.+||-+++...++.+++.|...+. +. +.+.|..++ +....+.|+. |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~--------~~-~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIP--------AE-IVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcC--------CC-EEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 444444555555433 468999999999999999999976431 22 233455432 2233444443 5
Q ss_pred CcEEEEeCCCCcccccc----------CCeeEEEeCCcccceeecCC--------CCcccccccccCHHhHHHHhcCCCC
Q 037717 318 ARKVVLATNIAETSLTI----------DGIKYVIHPGFAKVKSYNPK--------TGMESLLVNPISKASANQRTGLSER 379 (582)
Q Consensus 318 ~~kVivaT~iae~gidI----------p~v~~VID~g~~k~~~yd~~--------~~~~~l~~~~~S~~~~~QR~GRaGR 379 (582)
...|+++|..+-.|||+ +.++.||=.-++=.. -||- .|-......|-..-...|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 346666632222000 1110 1111112234444456777777776
Q ss_pred CC----CCeEEEeeCh
Q 037717 380 TG----PGKCFRLYTL 391 (582)
Q Consensus 380 ~~----~G~~~~L~~~ 391 (582)
.. .|....|-++
T Consensus 601 ~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 601 HPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCCcCceEEEEEeCC
Confidence 64 2555544444
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.54 E-value=2.1e-06 Score=96.39 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=75.0
Q ss_pred EEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhC-CccCcEEeEEEeec---------ccCCCC
Q 037717 84 AIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMG-VKLGHEVGYSIRFE---------DCTSDK 141 (582)
Q Consensus 84 iv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~-~~~g~~vgy~v~~~---------~~~~~~ 141 (582)
+..+-+|||||...-+++.+ |.-.++.++..++...++ ..+ +.|+-... ......
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v---~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDV---AVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcE---EEECCCCCHHHHHHHHHHHhCCC
Confidence 34445799999655544322 999999999999988776 322 22322111 122456
Q ss_pred ccEEEEChHHHHHHHHcCCCCCCCCceEeeccc------CCCcchhHH-HHHHHHHHhhCCCceEEEecccCChHHHHh
Q 037717 142 TVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQ------ERTLSTDNL-FGLLKDLINYRPDLKLLISSATLDAEKFSD 213 (582)
Q Consensus 142 t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H------eR~~~~d~l-l~~lk~~~~~~~~~kii~~SAT~~~~~~~~ 213 (582)
.+|+++|-.-+. .-+.++++|||||=| ++++..+.- +.+++. ...+..+|+.|||...+.+..
T Consensus 241 ~~IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra---~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 241 ARVVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA---HQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CcEEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH---HHcCCcEEEECCCCCHHHHHH
Confidence 789999864332 127899999999999 344443221 122221 235889999999998888765
No 149
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.44 E-value=9.8e-06 Score=90.66 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=67.4
Q ss_pred CCeEEEEecCCCCHHHHHHhcCCCCC--CC-cEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCH
Q 037717 291 AELIICPIYANLPTELQAKIFEPTPE--RA-RKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISK 367 (582)
Q Consensus 291 ~~~~v~~lh~~l~~~~r~~v~~~~~~--g~-~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~ 367 (582)
.+..++.+||.++..+|+++.+.|.+ +. .-.+++|-+..-||++=+.+.|| .||+..+ |.--
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli--------l~D~dWN-------Pa~d 682 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI--------LFDPDWN-------PAVD 682 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE--------EeCCCCC-------chhH
Confidence 37889999999999999999888853 33 33456777888999999999888 7777655 2223
Q ss_pred HhHHHHhcCCCCCCCCeEEEeeChhhhh
Q 037717 368 ASANQRTGLSERTGPGKCFRLYTLHNYH 395 (582)
Q Consensus 368 ~~~~QR~GRaGR~~~G~~~~L~~~~~~~ 395 (582)
.+++-|+=|-|...+-..|||.+....+
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCCCch
Confidence 3555566666666678899999876544
No 150
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.34 E-value=2.5e-05 Score=89.43 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=91.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCC---CCCcEEEEeCCCCccccc
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTP---ERARKVVLATNIAETSLT 333 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~---~g~~kVivaT~iae~gid 333 (582)
..+..||||-.=.+..+.++++|.. .++..--|-|+.+.+.|+..+..|. +...-.++||-+...|||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~---------r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSL---------RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHH---------cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 3457899998877778888888876 4677788899999999999887774 345678999999999999
Q ss_pred cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhhh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHRI 397 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~~ 397 (582)
+-..+.|| .||+..+- -.--++.-|+-|.|-...=..|||.|+..|+..
T Consensus 768 LatADTVI--------IFDSDWNP-------QNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 768 LATADTVI--------IFDSDWNP-------QNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred ccccceEE--------EeCCCCCc-------chHHHHHHHHHhhcccceEEEEEEecCCchHHH
Confidence 99999988 67665442 222245557777776666889999999999864
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.32 E-value=8.5e-06 Score=92.86 Aligned_cols=158 Identities=25% Similarity=0.265 Sum_probs=102.9
Q ss_pred eEEEecccC--ChHHHHhhhCCCCEEeeCCceecee------EEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 037717 198 KLLISSATL--DAEKFSDYFGSAPIFKIPGRRYPVE------LFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQ 269 (582)
Q Consensus 198 kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~~v~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 269 (582)
|+-+||.|. ....|.+.++ -+|+.||... |+. ..|. .......+.+..+...|. .+.||||-+.|.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTnr-P~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SV 638 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK-LDVVVIPTNR-PIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTSV 638 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCC-CcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCcH
Confidence 788899998 5566776664 5677777642 221 1222 122334566666666664 468999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC--------CeeEEE
Q 037717 270 DEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID--------GIKYVI 341 (582)
Q Consensus 270 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp--------~v~~VI 341 (582)
+..+.++++|... ++..-.+++.....|-+.|-++-..| .|-||||.|.+|-||. |=-+||
T Consensus 639 e~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VI 707 (1112)
T PRK12901 639 EISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAII 707 (1112)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEE
Confidence 9999999999873 33333344443344444454554444 5889999999999987 334555
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeC
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYT 390 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~ 390 (582)
....+-|+--=.|-.|||||.| ||.+-.+.+
T Consensus 708 ------------------gTerheSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 708 ------------------GTERHESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred ------------------EccCCCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 2234566666789999999999 487543333
No 152
>COG4889 Predicted helicase [General function prediction only]
Probab=98.12 E-value=5.9e-06 Score=91.11 Aligned_cols=108 Identities=13% Similarity=0.208 Sum_probs=77.7
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhc----cCCCCCC--eEEEEecCCCCHHHHHHhc---CCCCCCCcEEEEeCCCCcc
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRG----LGTKIAE--LIICPIYANLPTELQAKIF---EPTPERARKVVLATNIAET 330 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~----~~~~~~~--~~v~~lh~~l~~~~r~~v~---~~~~~g~~kVivaT~iae~ 330 (582)
...+-||.+.+.-..+++.+..-... +..+.++ +.+-.+.|.|..-+|.... ..|++...||+-.--.+..
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 45678888777777777666442221 1112233 3444556888888886543 3578888999988888999
Q ss_pred ccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeE
Q 037717 331 SLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKC 385 (582)
Q Consensus 331 gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~ 385 (582)
|||+|..+-|| .|||+..| -..+|-.||+=|..+|+-
T Consensus 541 GVDVPaLDsVi--------Ff~pr~sm----------VDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 541 GVDVPALDSVI--------FFDPRSSM----------VDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred CCCccccceEE--------EecCchhH----------HHHHHHHHHHHHhCcCCc
Confidence 99999999999 88887654 457999999999998873
No 153
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.05 E-value=9.9e-06 Score=77.68 Aligned_cols=113 Identities=29% Similarity=0.396 Sum_probs=72.7
Q ss_pred CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEE
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKY 146 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~ 146 (582)
++++++||||+||||.+..+... ..|+.|....+..++.++.++- ..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~-----~~~~~----------- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFY-----VARTE----------- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEE-----ESSTT-----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccc-----hhhcc-----------
Confidence 47889999999999888765332 6778888888888888774421 00000
Q ss_pred EChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh-CCCceEEEecccCChHH
Q 037717 147 MTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY-RPDLKLLISSATLDAEK 210 (582)
Q Consensus 147 ~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~-~~~~kii~~SAT~~~~~ 210 (582)
..|.-+++.......-+++++|+||-+. |......++..++.+... .+.-.++.+|||...+.
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 0133333322222224568999999998 776666666767666553 46678888999994444
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.96 E-value=0.0026 Score=66.97 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC--cEEEEeCCCCcccccc
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA--RKVVLATNIAETSLTI 334 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~--~kVivaT~iae~gidI 334 (582)
.++.+.+||+.-..-.+.+...+.+ .++-.+-+.|..++.+|...-+.|.... +--|++-..+.+|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~---------r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNK---------RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHH---------cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 3457899999988888888888877 4566778899999999999988886543 3457788889999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLH 392 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~ 392 (582)
-..+.|| .-+-.|||.-- -++.-|+-|.|....=..+.|..+.
T Consensus 561 tAa~~VV----FaEL~wnPgvL-----------lQAEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 561 TAASVVV----FAELHWNPGVL-----------LQAEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred eccceEE----EEEecCCCceE-----------EechhhhhhccccceeeEEEEEecC
Confidence 9999999 33334444321 1345567777766653333344443
No 155
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=8.6e-05 Score=78.34 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=68.5
Q ss_pred CCeEEEECCCCCchhchHhhhhc--------c----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLY--------E----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDK 141 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll--------~----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~ 141 (582)
..+++++||||+||||.+-.+.. . +.|++|....+..++.++.++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----------------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----------------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-----------------
Confidence 46899999999999987654311 0 555555554444444443321
Q ss_pred ccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh-CCC-ceEEEecccCChHHHHhhhC
Q 037717 142 TVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY-RPD-LKLLISSATLDAEKFSDYFG 216 (582)
Q Consensus 142 t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~-~~~-~kii~~SAT~~~~~~~~~f~ 216 (582)
....++.-+...+. .+.++++|+||++. |.......+..++.++.. .++ -.++.+|||...+.+.+.|.
T Consensus 237 --~~~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 237 --KAIESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --EeeCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 01113334443332 24789999999998 655433345556666553 334 46788999997766666553
No 156
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=6.4e-06 Score=73.29 Aligned_cols=102 Identities=25% Similarity=0.416 Sum_probs=55.7
Q ss_pred hCCCeEEEECCCCCchhchHhhhhcc------------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCC
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLYE------------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS 139 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll~------------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~ 139 (582)
++++.++|.|++|+|||+.+-.++.+ |.......+.+.++..++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 45678999999999999888766442 21222344455555555533211
Q ss_pred CCccEEEEChH----HHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 140 DKTVLKYMTDC----MLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 140 ~~t~I~~~T~g----~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
-.|.. .+.+.+..... .+|||||+|.-. .+-.+..++.+.. .+.+++|+.+..
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~----~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRV----VLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTE----EEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcCC----eEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11223 33333333321 689999999532 2566777777665 677887776543
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00012 Score=82.36 Aligned_cols=114 Identities=26% Similarity=0.256 Sum_probs=71.2
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhcc--chHHHHHHH----HHHHHHHhC---CccCcEEe
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLYE--PRWVAAMSV----AARVSQEMG---VKLGHEVG 129 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll~--P~r~~a~~~----a~~va~~~~---~~~g~~vg 129 (582)
++.+-.+++--+++.++.-+.--|.-.-||=||| -.+|.|+-. +..+..+.+ |+|-+.+|+ ..+|.+||
T Consensus 74 ~Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG 153 (822)
T COG0653 74 KRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVG 153 (822)
T ss_pred HHhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCcee
Confidence 4556677777788888888877888999999999 345555443 333322222 444444444 34577788
Q ss_pred EEEeecccCC----CCccEEEEChH-----HHHHHHHcCC---CCCCCCceEeeccc
Q 037717 130 YSIRFEDCTS----DKTVLKYMTDC-----MLLREIVIEP---SLESYSVLIVDEAQ 174 (582)
Q Consensus 130 y~v~~~~~~~----~~t~I~~~T~g-----~Ll~~l~~~~---~l~~~~~vViDE~H 174 (582)
..+.+-.... =.++|+|+|.. .|.+.+.... .+....+-|+||++
T Consensus 154 ~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 154 VILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 7665432221 15799999974 3443333222 25668888888888
No 158
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.79 E-value=1.1e-05 Score=90.84 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=123.1
Q ss_pred CCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecc----cCCCC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED----CTSDK 141 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~----~~~~~ 141 (582)
+.+.++-+|||||||..+...+.. |-..+....+.+....+... |..++-. .++. ..-..
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~-tgd~~pd~~~v~~ 1020 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIEL-TGDVTPDVKAVRE 1020 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEec-cCccCCChhheec
Confidence 344677899999999666554332 65666655555555444333 3333211 0111 11236
Q ss_pred ccEEEEChHHHH---HHHHcCCCCCCCCceEeeccc----CCCcchhHHHHHHHHH-HhhCCCceEEEecccC-ChHHHH
Q 037717 142 TVLKYMTDCMLL---REIVIEPSLESYSVLIVDEAQ----ERTLSTDNLFGLLKDL-INYRPDLKLLISSATL-DAEKFS 212 (582)
Q Consensus 142 t~I~~~T~g~Ll---~~l~~~~~l~~~~~vViDE~H----eR~~~~d~ll~~lk~~-~~~~~~~kii~~SAT~-~~~~~~ 212 (582)
+.+++.||+..- |.+.+...+.+++.+|+||.| .|++..+.+......+ ....+.+|++++|--+ |+.+++
T Consensus 1021 ~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla 1100 (1230)
T KOG0952|consen 1021 ADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLA 1100 (1230)
T ss_pred CceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHH
Confidence 789999997654 334444458999999999999 6777766655554441 2234567888887666 999999
Q ss_pred hhhCCCCE--EeeCCceeceeEEEecCCchhHHHHHH---HHHHH-HHhcCCCCCEEEEcCCHHHHHHHHHHHHH
Q 037717 213 DYFGSAPI--FKIPGRRYPVELFYTKAPEVDYIEAAI---VTALQ-IHVNEPTGDILVFLTGQDEIERAEEILKQ 281 (582)
Q Consensus 213 ~~f~~~~v--~~i~gr~~~v~~~~~~~~~~~~~~~~~---~~~~~-i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 281 (582)
+|++..+. +...-|+.|.+.++...|..-|..... ...++ +....|..++|||+.+++....-+.-|..
T Consensus 1101 ~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1101 DWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred HHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHh
Confidence 99986655 333455667777777666533332211 12233 23345568999999988866655554443
No 159
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00017 Score=75.20 Aligned_cols=115 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE-
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK- 145 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~- 145 (582)
+++.++||||+||||.+-.+... |.|++|.+.....++.++ ..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lg--------------------ipv~v 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------------------FEVIA 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcC--------------------CcEEe
Confidence 67899999999999877544211 555544443333333322 1222
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCC---hHHHHhhhC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLD---AEKFSDYFG 216 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~---~~~~~~~f~ 216 (582)
..++.-+.+.+..-..-.++++|+||-+= |.....-.+.-++.++. ..|+-.++.+|||.. ...+.+.|.
T Consensus 302 ~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 302 VRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 23566665555322222368999999996 55444445555555553 446666777999883 344555554
No 160
>PRK06526 transposase; Provisional
Probab=97.77 E-value=8.3e-05 Score=74.28 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.9
Q ss_pred HHHhCCCeEEEECCCCCchhchH
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~i 97 (582)
+.+..+++++++||+|+|||+++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHH
Confidence 34567889999999999999654
No 161
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.71 E-value=0.00081 Score=77.23 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=48.4
Q ss_pred CccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 141 KTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 141 ~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
++.|+++||.+|..-++++.. +..++.||||||| |...+-.---+++.....+++.-|.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 467999999999998888776 9999999999999 4433222222223333466778899999999
No 162
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.66 E-value=0.00039 Score=72.43 Aligned_cols=112 Identities=29% Similarity=0.363 Sum_probs=78.5
Q ss_pred CCeEEEECCCCCchhchHhhh----h-cc-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCcc
Q 037717 80 YPVLAIVGETGSGKTTQIPQY----L-YE-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTV 143 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~----l-l~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~ 143 (582)
++++.++||||.||||.+..+ . .. -.|+.|...-+..|+.|+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 789999999999999766543 2 11 567777777677777776543
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCc-eEEEecccCChHHHHhh
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDL-KLLISSATLDAEKFSDY 214 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~-kii~~SAT~~~~~~~~~ 214 (582)
.++-+|.=|...+. .+.++++|.||=+- |+..-...+.-++.......++ ..+.+|||...+.+.+-
T Consensus 264 ~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 264 EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 22334554544442 47889999999997 8877777888888887655444 56778999955555543
No 163
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.63 E-value=0.0071 Score=69.71 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHhC-CCeEEEECCCCCchhchHhhhhc--c----------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 63 TLPIYPFWEELLQAVSG-YPVLAIVGETGSGKTTQIPQYLY--E----------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~-~~~viv~a~TGSGKTt~ip~~ll--~----------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
...+..-|.+++..+.. +++++|+|++|+||||.+-.++. + |+..+|..+. +
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~----------- 414 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----A----------- 414 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----h-----------
Confidence 35677888889888766 68999999999999987754321 0 3333332211 1
Q ss_pred EEEeecccCCCCccEEEEChHHHHHHHHcC-CCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 130 YSIRFEDCTSDKTVLKYMTDCMLLREIVIE-PSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 130 y~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~-~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
.+.+--.|-..++..+..+ ..+...++|||||+- .++.+.+..+++.... ...|+|++.
T Consensus 415 -----------~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 415 -----------ESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred -----------ccCCceeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 1111122333333222222 237789999999995 5566666666654432 467887765
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.63 E-value=0.0028 Score=67.55 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=143.9
Q ss_pred CCccEEEEChHHHHHHHHc------CCC-CCCCCceEeecccC-CCcchhHHHHHHHHHHhhC-----------------
Q 037717 140 DKTVLKYMTDCMLLREIVI------EPS-LESYSVLIVDEAQE-RTLSTDNLFGLLKDLINYR----------------- 194 (582)
Q Consensus 140 ~~t~I~~~T~g~Ll~~l~~------~~~-l~~~~~vViDE~He-R~~~~d~ll~~lk~~~~~~----------------- 194 (582)
-+++|++++|=-|...+.. +.. |+++.++|||.+|- -.-++|-+..+++.+-...
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 3789999999766655542 122 99999999999981 1223444555554332111
Q ss_pred ----CCceEEEecccCChHHHH---hhhCC----CCEEee-C--Cc----eeceeEEEecCCchhH-------HHHHHHH
Q 037717 195 ----PDLKLLISSATLDAEKFS---DYFGS----APIFKI-P--GR----RYPVELFYTKAPEVDY-------IEAAIVT 249 (582)
Q Consensus 195 ----~~~kii~~SAT~~~~~~~---~~f~~----~~v~~i-~--gr----~~~v~~~~~~~~~~~~-------~~~~~~~ 249 (582)
--.|.|++|+..+++.-+ .++.+ ..+... + |. ..++...|..-+..+. ++--...
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 125899999988665432 22211 111111 1 11 2233344433222111 1111222
Q ss_pred HHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCC
Q 037717 250 ALQIHV-NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIA 328 (582)
Q Consensus 250 ~~~i~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ia 328 (582)
++.... ....+.+|||+|+.-+--.+-+.|.+ .++....+|--.++.+-.++=..|..|+.+|++-|.=+
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~---------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~ 360 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK---------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERF 360 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHh---------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHH
Confidence 333333 44568899999999999999999886 57888889888888888888888999999999999532
Q ss_pred c--cccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCC----CCCCeEEEeeChhhhhhh
Q 037717 329 E--TSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSER----TGPGKCFRLYTLHNYHRI 397 (582)
Q Consensus 329 e--~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR----~~~G~~~~L~~~~~~~~~ 397 (582)
= +=..|.|++.||=.|++....|. ++...+.+.... .+.+.|..||++.+...+
T Consensus 361 HFfrRy~irGi~~viFY~~P~~p~fY---------------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~L 420 (442)
T PF06862_consen 361 HFFRRYRIRGIRHVIFYGPPENPQFY---------------SELLNMLDESSGGEVDAADATVTVLYSKYDALRL 420 (442)
T ss_pred hhhhhceecCCcEEEEECCCCChhHH---------------HHHHhhhcccccccccccCceEEEEecHhHHHHH
Confidence 2 34678899999955555444332 233333333322 235889999999876554
No 165
>PRK14974 cell division protein FtsY; Provisional
Probab=97.53 E-value=0.00038 Score=72.12 Aligned_cols=118 Identities=25% Similarity=0.354 Sum_probs=67.0
Q ss_pred CCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
..+++++|++|+||||.+-.+... +.|..|....+..+..++..+-. + ...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g------ 204 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYG------ 204 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCC------
Confidence 358999999999999866543211 55666655555556655543210 0 000
Q ss_pred EECh-HHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccC--ChHHHHhhh
Q 037717 146 YMTD-CMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATL--DAEKFSDYF 215 (582)
Q Consensus 146 ~~T~-g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~--~~~~~~~~f 215 (582)
..| .++.+.+.. ....++++|+||.++ |...-.-++.-|+.+.+ ..|+..++++|||. |.-..++.|
T Consensus 205 -~dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 205 -ADPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred -CCHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 011 112222211 113467999999998 55443444555555543 46888899999988 333334444
No 166
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.53 E-value=0.011 Score=69.36 Aligned_cols=114 Identities=21% Similarity=0.179 Sum_probs=68.2
Q ss_pred cCCCChHHHHHHHHHHhC-CCeEEEECCCCCchhchHhhhh--cc----------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 62 KTLPIYPFWEELLQAVSG-YPVLAIVGETGSGKTTQIPQYL--YE----------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~-~~~viv~a~TGSGKTt~ip~~l--l~----------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
..+.+..-|.+.+..+.. +++++|+|..|+||||.+-.+. ++ |+-.+|..+. .
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~--------e------ 408 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE--------G------ 408 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh--------h------
Confidence 456788889999887776 5789999999999998753221 00 3333222111 0
Q ss_pred eEEEeecccCCCCccEEEEChHHHHHHHHcC-CCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 129 GYSIRFEDCTSDKTVLKYMTDCMLLREIVIE-PSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 129 gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~-~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
.+.+--.|-..|+..+..+ ..+...++|||||+- .+.+..+..+++.+. ....|+|++.-+
T Consensus 409 ------------~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 409 ------------GSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred ------------ccCcchhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 1111122333333322222 237788999999996 666666666665543 356788887544
No 167
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00044 Score=72.48 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=61.9
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccC------------CCCccE
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT------------SDKTVL 144 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~------------~~~t~I 144 (582)
+..+.+++++||||+||||.+-.+ +.+.....|. ..|++- ..+... .-+..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakL------------A~~~~~~~G~---~~V~li-t~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKL------------AARCVMRFGA---SKVALL-TTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHH------------HHHHHHhcCC---CeEEEE-ecccccccHHHHHHHHHHHcCCce
Confidence 346789999999999999877432 1221111110 123221 111100 001112
Q ss_pred -EEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChHHH
Q 037717 145 -KYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 145 -~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~~~ 211 (582)
.+.+++-+...+. .+.++++|+||++= |...-+.+...+..+.. ..+.-+++++|||...+.+
T Consensus 198 ~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 2334444443332 25678999999996 55444555555555433 2345578899999954443
No 168
>PRK08181 transposase; Validated
Probab=97.47 E-value=0.00082 Score=67.61 Aligned_cols=105 Identities=18% Similarity=0.305 Sum_probs=60.9
Q ss_pred HHhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHH
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLRE 155 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~ 155 (582)
.+..++++++.||+|+|||.++ ..++..+... | ..+.|.|..-|+..
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa------------~Aia~~a~~~-----g----------------~~v~f~~~~~L~~~ 148 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLA------------AAIGLALIEN-----G----------------WRVLFTRTTDLVQK 148 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHH------------HHHHHHHHHc-----C----------------CceeeeeHHHHHHH
Confidence 4567889999999999999553 3333333221 1 23455555555554
Q ss_pred HHc---CC-------CCCCCCceEeecccCCCcc---hhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhCC
Q 037717 156 IVI---EP-------SLESYSVLIVDEAQERTLS---TDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFGS 217 (582)
Q Consensus 156 l~~---~~-------~l~~~~~vViDE~HeR~~~---~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~~ 217 (582)
+.. +. .+.++++|||||++--..+ .+.++.++..... . +-++++.-.++..+.+.|++
T Consensus 149 l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 149 LQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred HHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHhcCC
Confidence 421 11 1578899999999833222 2345555554322 2 23455555567777777753
No 169
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0004 Score=72.24 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=67.8
Q ss_pred hCCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCcc
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTV 143 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~ 143 (582)
..+++++++||||+||||.+..+... |.|.+|...-+..++.++. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgv--------------------p 263 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV--------------------E 263 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCC--------------------C
Confidence 35788999999999999876543211 4444333332222222221 1
Q ss_pred EE-EEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChHHHHhhh
Q 037717 144 LK-YMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 144 I~-~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~~~~~~f 215 (582)
+. ..+|.-+.+.+..-....++++|+||=+= |....+-.+.-++.+.. ..|+.-++.+|||.....+.+.+
T Consensus 264 v~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 264 LIVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 21 23455554444322224678999999996 55444455555555543 34666678889988665555543
No 170
>PF05729 NACHT: NACHT domain
Probab=97.41 E-value=0.0019 Score=59.44 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=38.4
Q ss_pred ceEeecccCCCcchhH-----HHHHHHHHHhh--CCCceEEEecccCChHHHHhhhCCCCEEeeC
Q 037717 167 VLIVDEAQERTLSTDN-----LFGLLKDLINY--RPDLKLLISSATLDAEKFSDYFGSAPIFKIP 224 (582)
Q Consensus 167 ~vViDE~HeR~~~~d~-----ll~~lk~~~~~--~~~~kii~~SAT~~~~~~~~~f~~~~v~~i~ 224 (582)
++|||-++|-...... ....++.++.. .++.++++.|.+-....+.+++.....+.++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELE 148 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC
Confidence 5899988865543322 44555555544 6789999988877777788887655444443
No 171
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0012 Score=70.84 Aligned_cols=115 Identities=27% Similarity=0.316 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCCchhchHhhhh-----cc-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYL-----YE-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT 142 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~l-----l~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t 142 (582)
.+.+++++||||+||||.+-.+. .. |.|.++.......+..++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------ 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------ 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------------
Confidence 35689999999999998664321 11 445444433333333333211
Q ss_pred cEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-h-CCCceEEEecccCChHHH---HhhhC
Q 037717 143 VLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-Y-RPDLKLLISSATLDAEKF---SDYFG 216 (582)
Q Consensus 143 ~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~-~~~~kii~~SAT~~~~~~---~~~f~ 216 (582)
....++.-+...+. .+.++++||||.+- |.....-.+..++.++. . .+.-.++++|||.....+ .+.|.
T Consensus 282 -~~~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 282 -EVVYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred -EccCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 11223444444443 24578999999996 43332233444444444 2 344568889999955444 44554
No 172
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0012 Score=69.87 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=67.4
Q ss_pred CCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVL 144 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I 144 (582)
+.+++++|||||||||++.++... +.|.++.....+.++.++..+ +
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~-----~-------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-----Y-------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----e--------------
Confidence 467889999999999887665321 666666666666655544321 0
Q ss_pred EEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh----CCCceEEEecccC---ChHHHHhhhCC
Q 037717 145 KYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY----RPDLKLLISSATL---DAEKFSDYFGS 217 (582)
Q Consensus 145 ~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~----~~~~kii~~SAT~---~~~~~~~~f~~ 217 (582)
.......+...+. -.++++||||=+- |.....-.+..++.+... .+.-.++.+|||. +...+.++|..
T Consensus 284 ~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~ 358 (432)
T PRK12724 284 PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYES 358 (432)
T ss_pred ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcC
Confidence 0001223333332 2578999999875 443333344444444432 2345788899999 44555566643
No 173
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.35 E-value=0.00074 Score=68.84 Aligned_cols=118 Identities=17% Similarity=0.088 Sum_probs=59.5
Q ss_pred hCCCeEEEECCCCCchhchHhhhhc---c--------------chHHHHHHHHHHHHHHhCC-ccCcEEeEEEee-----
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLY---E--------------PRWVAAMSVAARVSQEMGV-KLGHEVGYSIRF----- 134 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll---~--------------P~r~~a~~~a~~va~~~~~-~~g~~vgy~v~~----- 134 (582)
...+-.+++-++|+|||.++-.++. + |. .+..+....+...... .. ..+-|.-..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRL 100 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-cccccccccccccc
Confidence 3556788899999999965554433 1 55 2233444444444321 11 111111110
Q ss_pred cccCCCCccEEEEChHHHH--------HHHHcCCCCCCCCceEeecccCC-CcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 135 EDCTSDKTVLKYMTDCMLL--------REIVIEPSLESYSVLIVDEAQER-TLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 135 ~~~~~~~t~I~~~T~g~Ll--------~~l~~~~~l~~~~~vViDE~HeR-~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
........+++++|.+.+. ..+. -.++++||+||+|.- +..+.. ...+.. . ...+.+++|||
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~----~~~~~~vIvDEaH~~k~~~s~~-~~~l~~---l-~~~~~~lLSgT 171 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLK----QIKWDRVIVDEAHRLKNKDSKR-YKALRK---L-RARYRWLLSGT 171 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHH----TSEEEEEEETTGGGGTTTTSHH-HHHHHC---C-CECEEEEE-SS
T ss_pred cccccccceeeeccccccccccccccccccc----cccceeEEEecccccccccccc-cccccc---c-ccceEEeeccc
Confidence 1123456789999999988 2221 134899999999943 333322 222222 2 25567889999
Q ss_pred C
Q 037717 206 L 206 (582)
Q Consensus 206 ~ 206 (582)
+
T Consensus 172 P 172 (299)
T PF00176_consen 172 P 172 (299)
T ss_dssp -
T ss_pred c
Confidence 8
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.26 E-value=0.00039 Score=66.77 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHh-C-CCeEEEECCCCCchhchHhh
Q 037717 67 YPFWEELLQAVS-G-YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 67 ~~~~~~il~~i~-~-~~~viv~a~TGSGKTt~ip~ 99 (582)
.+-|.+++..+. + +++++|.|+.|+||||.+-.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~ 37 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA 37 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH
Confidence 456778888774 3 35899999999999987644
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.25 E-value=0.0012 Score=58.97 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHHHHHHhC--CCeEEEECCCCCchhchH
Q 037717 71 EELLQAVSG--YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 71 ~~il~~i~~--~~~viv~a~TGSGKTt~i 97 (582)
..+...+.. +..+++.||+|+|||+.+
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 445555555 788999999999999655
No 176
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.24 E-value=0.0016 Score=67.58 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=59.2
Q ss_pred CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
.++.+++.|+||+|||+++ ..+|..+... | ..++|.|...|+..+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa------------~aIa~~l~~~-----g----------------~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS------------NCIAKELLDR-----G----------------KSVIYRTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHHH------------HHHHHHHHHC-----C----------------CeEEEEEHHHHHHHHHH
Confidence 4688999999999999653 3344443221 1 34567777666665522
Q ss_pred C------------CCCCCCCceEeeccc-CCC--cchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhC
Q 037717 159 E------------PSLESYSVLIVDEAQ-ERT--LSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFG 216 (582)
Q Consensus 159 ~------------~~l~~~~~vViDE~H-eR~--~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~ 216 (582)
. ..+.++++||||+++ +.. ...+.++.++...... . +-+++|....++.+.+.++
T Consensus 229 ~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~--~-k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 229 IRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLR--Q-KKMIISTNLSLEELLKTYS 298 (329)
T ss_pred HHhccchhHHHHHHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHC--C-CCEEEECCCCHHHHHHHHh
Confidence 1 125789999999998 221 1123344444332221 2 3355566666776666553
No 177
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.24 E-value=0.0013 Score=73.42 Aligned_cols=123 Identities=24% Similarity=0.239 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc------------c-----chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY------------E-----PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll------------~-----P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
..|+..+.....+++++|+|+.|+||||.+-.++. . |+.-+|..+.+.+..... .++.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~---- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAA---- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-cccc----
Confidence 56777888888899999999999999986554321 1 776666665554433221 1100
Q ss_pred EEeecccCCCCccEEEEChHHHHHHHH-------cCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 131 SIRFEDCTSDKTVLKYMTDCMLLREIV-------IEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 131 ~v~~~~~~~~~t~I~~~T~g~Ll~~l~-------~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
.........+...|-..|+.... .......+++|||||+= +++...+..+++. ..+..|+|++-
T Consensus 223 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 223 ----AEALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred ----chhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 00000000111223222222110 01123468999999994 5666655555553 34678888864
Q ss_pred c
Q 037717 204 A 204 (582)
Q Consensus 204 A 204 (582)
-
T Consensus 294 D 294 (586)
T TIGR01447 294 D 294 (586)
T ss_pred C
Confidence 3
No 178
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.19 E-value=0.0057 Score=70.06 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcC----CCC
Q 037717 240 VDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFE----PTP 315 (582)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~----~~~ 315 (582)
.+|.......+..+.. . +|.+|||+++.+..+.+++.|.... +..+ ..+|.. .+.++++ .|.
T Consensus 517 ~~~~~~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~l-l~Q~~~---~~~~ll~~f~~~~~ 582 (697)
T PRK11747 517 EAHTAEMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL--------RLML-LVQGDQ---PRQRLLEKHKKRVD 582 (697)
T ss_pred HHHHHHHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc--------CCcE-EEeCCc---hHHHHHHHHHHHhc
Confidence 3566666666666665 3 4558999999999999999887521 1112 224543 3445553 344
Q ss_pred CCCcEEEEeCCCCccccccCC--eeEEEeCCcccceeecCC----------CCccccc--ccccCHHhHHHHhcCCCCCC
Q 037717 316 ERARKVVLATNIAETSLTIDG--IKYVIHPGFAKVKSYNPK----------TGMESLL--VNPISKASANQRTGLSERTG 381 (582)
Q Consensus 316 ~g~~kVivaT~iae~gidIp~--v~~VID~g~~k~~~yd~~----------~~~~~l~--~~~~S~~~~~QR~GRaGR~~ 381 (582)
.|...|+++|.....|||+|+ .+.||=.|++-...-||. .|-+.+. ..|.-.....|-+||.=|..
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 577789999999999999987 677776666422111110 0101111 11333345789999998876
Q ss_pred C--CeEEEeeCh
Q 037717 382 P--GKCFRLYTL 391 (582)
Q Consensus 382 ~--G~~~~L~~~ 391 (582)
. |..+.|=.+
T Consensus 663 ~D~G~i~ilD~R 674 (697)
T PRK11747 663 QDRGRVTILDRR 674 (697)
T ss_pred CceEEEEEEccc
Confidence 4 766655443
No 179
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.17 E-value=0.00076 Score=63.70 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=55.2
Q ss_pred HHHhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHH
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLR 154 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~ 154 (582)
+.+..++++++.|+||+|||.+ |..++..+.. . | ..+.|.+..-|++
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThL------------a~ai~~~~~~-~----g----------------~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHL------------AVAIANEAIR-K----G----------------YSVLFITASDLLD 88 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHH------------HHHHHHHHHH-T----T------------------EEEEEHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHH------------HHHHHHHhcc-C----C----------------cceeEeecCceec
Confidence 3456788999999999999955 3444444433 1 1 2234555555665
Q ss_pred HHHcCC----------CCCCCCceEeecccCCCc---chhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhCCC
Q 037717 155 EIVIEP----------SLESYSVLIVDEAQERTL---STDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFGSA 218 (582)
Q Consensus 155 ~l~~~~----------~l~~~~~vViDE~HeR~~---~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~~~ 218 (582)
.+.... .+.+++++||||+---.. ..+.+..++..... +..+|+ +.-.+++.+.+.|++.
T Consensus 89 ~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~---~~~tIi-TSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 89 ELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDERYE---RKPTII-TSNLSPSELEEVLGDR 161 (178)
T ss_dssp HHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHHHH---T-EEEE-EESS-HHHHHT-----
T ss_pred cccccccccchhhhcCccccccEecccccceeeecccccccchhhhhHhhc---ccCeEe-eCCCchhhHhhccccc
Confidence 554321 156789999999962111 22334444443222 224454 4446889999988754
No 180
>PF13173 AAA_14: AAA domain
Probab=97.14 E-value=0.00097 Score=59.27 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 164 SYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 164 ~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
.-.+|+|||+|.- .+ ....++.+....++.++++.+-.
T Consensus 61 ~~~~i~iDEiq~~-~~---~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYL-PD---WEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhh-cc---HHHHHHHHHHhccCceEEEEccc
Confidence 5689999999933 23 34455665555578888886443
No 181
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.14 E-value=0.0012 Score=73.81 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc----------------cchHHHHHHHHHHHHHHhCCccCcEEeEE
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----------------EPRWVAAMSVAARVSQEMGVKLGHEVGYS 131 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll----------------~P~r~~a~~~a~~va~~~~~~~g~~vgy~ 131 (582)
..|+..+.....+++++|+|++|+||||.+-.++. -|+.-+|..+.+.+..... .++ .
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~----~- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLP----L- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-ccc----c-
Confidence 56777777777889999999999999987644321 1777777766665543321 110 0
Q ss_pred EeecccCCCCccEEEEChHHHHHHHH-------cCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 132 IRFEDCTSDKTVLKYMTDCMLLREIV-------IEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 132 v~~~~~~~~~t~I~~~T~g~Ll~~l~-------~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
.+...........|-..|+.... +......+++|||||+- .++...+..+++. ..++.|+|++.-
T Consensus 229 ---~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvGD 300 (615)
T PRK10875 229 ---TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLGD 300 (615)
T ss_pred ---chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEecc
Confidence 00000000001122222221110 01123457999999995 5565555555553 346788888653
No 182
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.13 E-value=0.068 Score=63.43 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHH-hCCCeEEEECCCCCchhchHhhhhc--c----------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 63 TLPIYPFWEELLQAV-SGYPVLAIVGETGSGKTTQIPQYLY--E----------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 63 ~lPi~~~~~~il~~i-~~~~~viv~a~TGSGKTt~ip~~ll--~----------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
...+..-|.+.+..+ ..+++++|+|+.|+||||.+-.+.- + |+--+|..+ .+..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L----~e~~--------- 445 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL----EKEA--------- 445 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH----HHhh---------
Confidence 467888899999877 4578999999999999987744311 0 333332221 1111
Q ss_pred EEEeecccCCCCccEEEEChHHHHHHH-HcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 130 YSIRFEDCTSDKTVLKYMTDCMLLREI-VIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 130 y~v~~~~~~~~~t~I~~~T~g~Ll~~l-~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
.|--.|-..++..+ .....+..-++|||||+. .+++..+..+++.+. ....|+|++.-+
T Consensus 446 -------------Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 446 -------------GIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred -------------CCCeeeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 11122323332112 122337778899999996 666666666666543 246788887544
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.12 E-value=0.0025 Score=73.07 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=33.5
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhh
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.....+...|.+++..+..+++++|+|+.|+||||.+-.
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~ 357 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRA 357 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH
Confidence 345678889999999999999999999999999987643
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.08 E-value=0.002 Score=63.71 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=33.2
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhh
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..-|....|...+.++.+++++++.||+|||||+++-.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45778889999999999999999999999999976644
No 185
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.0041 Score=61.65 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecccCChHHHHhhhCC
Q 037717 162 LESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSATLDAEKFSDYFGS 217 (582)
Q Consensus 162 l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SAT~~~~~~~~~f~~ 217 (582)
+.++++|||||++.-. .++.-..++-.++..| .+.+-+++|.-++.+.+.+.+++
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 6789999999999322 3444444444444332 22344555566677888877753
No 186
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0036 Score=66.71 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=65.2
Q ss_pred hCCCeEEEECCCCCchhchHhhhhc------c----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCC
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLY------E----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDK 141 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll------~----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~ 141 (582)
..++++.++||||+||||.+-.+.. . ..|+.+.+.....++.+|..+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~----------------- 251 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV----------------- 251 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce-----------------
Confidence 3567899999999999988753211 0 333444433333333333221
Q ss_pred ccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecccCChHH---HHhhhC
Q 037717 142 TVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSATLDAEK---FSDYFG 216 (582)
Q Consensus 142 t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SAT~~~~~---~~~~f~ 216 (582)
..+-++.-+...+. .+.++++++||.+ -|....+.+...++.+.... +.-.++++|||...+. +...|.
T Consensus 252 --~~v~~~~dl~~al~---~l~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 252 --RSIKDIADLQLMLH---ELRGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred --ecCCCHHHHHHHHH---HhcCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 01112222222222 2678899999997 35554455666666654433 4456788999985444 444554
No 187
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.03 E-value=0.0026 Score=73.42 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=89.5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC-CcEEE-EeCCCCccccccCCe
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-ARKVV-LATNIAETSLTIDGI 337 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kVi-vaT~iae~gidIp~v 337 (582)
.++||||.=+..++.+.+-|-+. ..+.+.-..+.|+.++.+|.++.+.|.++ .+.|+ ++|-+...|+|+-+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA 1414 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA 1414 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCC
Confidence 57999999999888888776552 23566677889999999999999999988 77775 778899999999999
Q ss_pred eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 338 KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 338 ~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
+.|| .+++..+ |.---+++-|+-|.|....=-.|||.++...+.
T Consensus 1415 DTVV--------FvEHDWN-------PMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1415 DTVV--------FVEHDWN-------PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred ceEE--------EEecCCC-------chhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 9999 4444433 111124666777777666677999999987653
No 188
>PRK08116 hypothetical protein; Validated
Probab=96.98 E-value=0.0056 Score=61.77 Aligned_cols=100 Identities=24% Similarity=0.338 Sum_probs=53.9
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
+..+++.|++|+|||.++ .+++..+.+. | ..++|.+..-+++.+...
T Consensus 114 ~~gl~l~G~~GtGKThLa------------~aia~~l~~~-----~----------------~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLA------------ACIANELIEK-----G----------------VPVIFVNFPQLLNRIKST 160 (268)
T ss_pred CceEEEECCCCCCHHHHH------------HHHHHHHHHc-----C----------------CeEEEEEHHHHHHHHHHH
Confidence 345999999999999553 3444544331 1 234455555455444211
Q ss_pred -------------CCCCCCCceEeeccc-CCCcchhHHHHHHHHHHhh--CCCceEEEecccCChHHHHhhh
Q 037717 160 -------------PSLESYSVLIVDEAQ-ERTLSTDNLFGLLKDLINY--RPDLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 160 -------------~~l~~~~~vViDE~H-eR~~~~d~ll~~lk~~~~~--~~~~kii~~SAT~~~~~~~~~f 215 (582)
..+.++++|||||++ ++. ++.....+-.++.. +....+|+ |....++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~--t~~~~~~l~~iin~r~~~~~~~Ii-TsN~~~~eL~~~~ 229 (268)
T PRK08116 161 YKSSGKEDENEIIRSLVNADLLILDDLGAERD--TEWAREKVYNIIDSRYRKGLPTIV-TTNLSLEELKNQY 229 (268)
T ss_pred HhccccccHHHHHHHhcCCCEEEEecccCCCC--CHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHH
Confidence 016788999999997 332 23323333333322 23344554 4445566665544
No 189
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.006 Score=61.34 Aligned_cols=117 Identities=15% Similarity=0.255 Sum_probs=63.5
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccE
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVL 144 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I 144 (582)
.++.+.++|++|+||||.+-.+... +.|+.+.+..+..+..++ ..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--------------------~~~ 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------------------FEV 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC--------------------ceE
Confidence 4578999999999999866433111 444433332222222211 112
Q ss_pred EE-EChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCC---hHHHHhhhC
Q 037717 145 KY-MTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLD---AEKFSDYFG 216 (582)
Q Consensus 145 ~~-~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~---~~~~~~~f~ 216 (582)
.. .++.-+.+.+..-....++++||||-+= |...-+-++.-++.++. ..|+..++.+|||.. .....+.|.
T Consensus 134 ~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 134 IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 22 2344444433211123578999999996 44433344444444443 356667888999984 444455554
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0035 Score=68.11 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHH
Q 037717 162 LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFS 212 (582)
Q Consensus 162 l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~ 212 (582)
+.++++||||.+- ++.....+...+..+......-.+++++++.....+.
T Consensus 426 l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 426 LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 4679999999996 3333233333333333333456788888888444443
No 191
>PRK06893 DNA replication initiation factor; Validated
Probab=96.95 E-value=0.0022 Score=63.14 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=29.6
Q ss_pred CCCCCceEeecccCCCcc---hhHHHHHHHHHHhhCCCceEEEecccCChHHHH
Q 037717 162 LESYSVLIVDEAQERTLS---TDNLFGLLKDLINYRPDLKLLISSATLDAEKFS 212 (582)
Q Consensus 162 l~~~~~vViDE~HeR~~~---~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~ 212 (582)
+.++++|||||+|.-..+ ...++.++..... ...++|++|++..+..+.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l~ 140 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHALS 140 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHcc
Confidence 567899999999943212 2245555555432 233567788877555443
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.95 E-value=0.0043 Score=60.65 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=16.8
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..+++.||+|+|||+++
T Consensus 36 ~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35678999999999999765
No 193
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0049 Score=69.98 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=67.6
Q ss_pred CCeEEEECCCCCchhchHhhhhcc----------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCcc
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE----------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTV 143 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~----------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~ 143 (582)
++++.++||||+||||.+-.+... +.|+.+...-+..++.++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 578999999999999877543210 334444443333333333211
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChHHHH
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAEKFS 212 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~~~~ 212 (582)
..+.++.-+...+. .+.++++|+||=+= |...-.-+...++.+.. ..|.-.++++|||...+.+.
T Consensus 246 ~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 11235666655553 36688999999996 65544446666666543 44667889999998554443
No 194
>PRK08727 hypothetical protein; Validated
Probab=96.92 E-value=0.0027 Score=62.71 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.|++|||||.++
T Consensus 41 ~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999654
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=96.89 E-value=0.0059 Score=61.29 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCCCceEeecccCCCcchh---HHHHHHHHHHhhCCCceEEEecccCChHHHHhhh
Q 037717 162 LESYSVLIVDEAQERTLSTD---NLFGLLKDLINYRPDLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 162 l~~~~~vViDE~HeR~~~~d---~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f 215 (582)
+...+++||||++....+.+ .++.++...... -. ++++.-..+..+.+.|
T Consensus 162 ~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~---~s-~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK---GS-MILTSNLPFGQWDQTF 214 (259)
T ss_pred hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhc---Cc-EEEecCCCHHHHHHHh
Confidence 45678999999994433322 455555443322 13 4555555677888877
No 196
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.88 E-value=0.0066 Score=62.70 Aligned_cols=112 Identities=26% Similarity=0.269 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccE
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVL 144 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I 144 (582)
.++++.++||+|+||||.+-.+... +.|.+|.......+..++. ++... ... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~~~--~---- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-KEG--A---- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-CCC--C----
Confidence 4578999999999999876543211 4455544443344443331 11100 000 0
Q ss_pred EEEChHH-HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-------hCCCceEEEecccCCh
Q 037717 145 KYMTDCM-LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-------YRPDLKLLISSATLDA 208 (582)
Q Consensus 145 ~~~T~g~-Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-------~~~~~kii~~SAT~~~ 208 (582)
.|.. ..+.+. .....++++||||=+- |....+.++..++.+.+ ..|+-.++.++||...
T Consensus 180 ---dpa~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 180 ---DPASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred ---CHHHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 1111 111111 1124678999999997 66555555555555433 3466788999999833
No 197
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.86 E-value=0.01 Score=68.34 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=105.4
Q ss_pred eEEEecccC-ChHHHHhhhCCC-CEEeeCCceec---e--------------eEEEecCCchhHHHHHHHHHHHHHhcCC
Q 037717 198 KLLISSATL-DAEKFSDYFGSA-PIFKIPGRRYP---V--------------ELFYTKAPEVDYIEAAIVTALQIHVNEP 258 (582)
Q Consensus 198 kii~~SAT~-~~~~~~~~f~~~-~v~~i~gr~~~---v--------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 258 (582)
.+|++|||+ ..+.|.+.+|-. +.....+..+| + ...|......++.......+..+....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~- 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII- 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-
Confidence 578999999 677788888742 21111111111 1 112222222446666555666665544
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhh--hccCCCCCCeEEEEecCCCCHHHHHHhcCCCC----CCCcEEEEeC--CCCcc
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRT--RGLGTKIAELIICPIYANLPTELQAKIFEPTP----ERARKVVLAT--NIAET 330 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~----~g~~kVivaT--~iae~ 330 (582)
+|.+|||+||....+.+.+.+.+.. ..+.. ...+.+-+ .++ .+++++++.|. .|.--|++|+ .....
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~-~~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVET-KDA---QETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeC-CCc---chHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 5889999999999999998876521 00000 01222222 111 35666777664 2455699999 78888
Q ss_pred ccccCC--eeEEEeCCcccceeecCCCC--cccc-------cc-cc---cCHHhHHHHhcCCCCCCC--CeEEEe
Q 037717 331 SLTIDG--IKYVIHPGFAKVKSYNPKTG--MESL-------LV-NP---ISKASANQRTGLSERTGP--GKCFRL 388 (582)
Q Consensus 331 gidIp~--v~~VID~g~~k~~~yd~~~~--~~~l-------~~-~~---~S~~~~~QR~GRaGR~~~--G~~~~L 388 (582)
|||++| .+.||=.|++-....|+... +..+ .. .| ...-...|-+||+=|... |..+.+
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 999998 57777788875333222110 0000 00 11 222457899999999986 544443
No 198
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.86 E-value=0.0021 Score=67.65 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=14.5
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
++++|.|..|||||.++
T Consensus 2 ~v~~I~G~aGTGKTvla 18 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLA 18 (352)
T ss_pred eEEEEEecCCcCHHHHH
Confidence 57899999999999543
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.85 E-value=0.0046 Score=54.45 Aligned_cols=18 Identities=56% Similarity=0.654 Sum_probs=16.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
++.+++.||+||||||.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 568999999999999776
No 200
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.004 Score=67.17 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=27.4
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHH
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEK 210 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~ 210 (582)
.+.-..+.++||||||. +..+..-.+||.+-. |...++++-||-+...
T Consensus 116 ~p~~g~~KV~IIDEah~--Ls~~A~NALLKtLEE--Pp~~viFILaTte~~k 163 (484)
T PRK14956 116 APMGGKYKVYIIDEVHM--LTDQSFNALLKTLEE--PPAHIVFILATTEFHK 163 (484)
T ss_pred hhhcCCCEEEEEechhh--cCHHHHHHHHHHhhc--CCCceEEEeecCChhh
Confidence 34456789999999993 334444555555422 4445554445554443
No 201
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.0054 Score=69.08 Aligned_cols=49 Identities=24% Similarity=0.427 Sum_probs=27.6
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
++.....+.-..++++||||+|.-+ .+..-.+||.+-.-.++.++|+.+
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3333334445678999999999433 333344555433333456666543
No 202
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.84 E-value=0.00018 Score=72.36 Aligned_cols=115 Identities=23% Similarity=0.324 Sum_probs=62.7
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHhhhhcc----------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecc
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIPQYLYE----------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED 136 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip~~ll~----------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~ 136 (582)
++.-.+.+...|++|||||||||.+.-|-++ -.|+++.-+.+++...+...+...--|.-+|+
T Consensus 266 ~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFE- 344 (514)
T KOG2373|consen 266 YLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFE- 344 (514)
T ss_pred HhccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHh-
Confidence 3444456788999999999999999888776 34555544433321110000000000111222
Q ss_pred cCCCCccEEEECh------HHHHHHHHcCCCCCCCCceEeeccc----------CCCcchhHHHHHHHHHHh
Q 037717 137 CTSDKTVLKYMTD------CMLLREIVIEPSLESYSVLIVDEAQ----------ERTLSTDNLFGLLKDLIN 192 (582)
Q Consensus 137 ~~~~~t~I~~~T~------g~Ll~~l~~~~~l~~~~~vViDE~H----------eR~~~~d~ll~~lk~~~~ 192 (582)
...+-+||- ...++.+...-...++-|||||..+ .|-...|.+++.++....
T Consensus 345 ----rlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT 412 (514)
T KOG2373|consen 345 ----RLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFAT 412 (514)
T ss_pred ----ccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHhh
Confidence 233445552 2233444433346778999999987 344455666677666543
No 203
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.84 E-value=0.0093 Score=68.55 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=94.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCc--EEEEeCCCCcccccc
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERAR--KVVLATNIAETSLTI 334 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~--kVivaT~iae~gidI 334 (582)
..+..+|||..=.+..+-+...|.- .++.-+-+.|+..-++|+..++.|....+ -.|++|-....|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLny---------HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNY---------HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhh---------cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 3478899998766666666666554 57888889999999999999999977654 468999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
-+.+.|| .||...+ |.=-+.+.-|.-|.|++..=+.|||.++...+.
T Consensus 1345 tgADTVv--------FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVV--------FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEE--------EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 9999999 8887766 222356778999999999999999999887653
No 204
>PRK06921 hypothetical protein; Provisional
Probab=96.83 E-value=0.0067 Score=61.09 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.+++.|+||+|||+++
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4678999999999999654
No 205
>PF13245 AAA_19: Part of AAA domain
Probab=96.81 E-value=0.0018 Score=51.93 Aligned_cols=42 Identities=33% Similarity=0.593 Sum_probs=29.3
Q ss_pred HHHhCCCeEEEECCCCCchhchHhhhhcc----------------chHHHHHHHHHHH
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQYLYE----------------PRWVAAMSVAARV 116 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~~ll~----------------P~r~~a~~~a~~v 116 (582)
.++.+++.++|.||+|||||+.+-..+.. |++.++..+.+++
T Consensus 5 ~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 5 RALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 36666788888999999999554332211 7777777776666
No 206
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.79 E-value=0.0014 Score=57.83 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.9
Q ss_pred EEEECCCCCchhchH
Q 037717 83 LAIVGETGSGKTTQI 97 (582)
Q Consensus 83 viv~a~TGSGKTt~i 97 (582)
+++.||+|+|||+.+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999665
No 207
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.77 E-value=0.12 Score=65.48 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=119.5
Q ss_pred CCCChHHHHHHHHHHhC--CCeEEEECCCCCchhchHhhhhc--c----------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 63 TLPIYPFWEELLQAVSG--YPVLAIVGETGSGKTTQIPQYLY--E----------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~--~~~viv~a~TGSGKTt~ip~~ll--~----------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
.+++..-|.+.+..+.. +++.+|+|+.|+||||.+-.++. + |+.-+|..+++ ..+..-. ++
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e----~~g~~A~-Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ----KIPRLAS-TF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH----Hhcchhh-hH
Confidence 45677778888877765 48999999999999987654321 1 65555544332 2111100 00
Q ss_pred eEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC--
Q 037717 129 GYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL-- 206 (582)
Q Consensus 129 gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-- 206 (582)
. ++-..... .....|...++ ..+..+...++|||||+- .+++..+..+++.+.. .+.|+|++.-+-
T Consensus 502 ~---~~l~~l~~--~~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvGD~~QL 569 (1960)
T TIGR02760 502 I---TWVKNLFN--DDQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLNDSAQR 569 (1960)
T ss_pred H---HHHHhhcc--cccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEcChhhc
Confidence 0 00000000 00011222222 122336778999999996 6677777777765433 568888875443
Q ss_pred C---h-HHHHhhh-CCCCEEeeCCc-eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHH
Q 037717 207 D---A-EKFSDYF-GSAPIFKIPGR-RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILK 280 (582)
Q Consensus 207 ~---~-~~~~~~f-~~~~v~~i~gr-~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~ 280 (582)
. + ..|...- ++.+....... ...-.+........+.........+.+.. .....+|+.++.++...+...++
T Consensus 570 ~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 570 QGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHREQQDLTQIIR 647 (1960)
T ss_pred CccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcHHHHHHHHHHH
Confidence 1 1 2233222 23444433221 11111122222222222333333333322 33469999999999999999999
Q ss_pred HhhhccCCC-CCCeEEEEe-cCCCCHHHHHHh
Q 037717 281 QRTRGLGTK-IAELIICPI-YANLPTELQAKI 310 (582)
Q Consensus 281 ~~~~~~~~~-~~~~~v~~l-h~~l~~~~r~~v 310 (582)
..+...|.- ..+..+..+ -.+|+..++...
T Consensus 648 ~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~ 679 (1960)
T TIGR02760 648 NALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA 679 (1960)
T ss_pred HHHHHcCCcCCCceEEEEeccCCCCHHHHhhH
Confidence 877544432 134444444 245777776643
No 208
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.77 E-value=0.02 Score=65.52 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=105.1
Q ss_pred eEEEecccC-ChHHHHhhhCCC---CEE--eeCCceeceeE---EEec----CCc-hhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 198 KLLISSATL-DAEKFSDYFGSA---PIF--KIPGRRYPVEL---FYTK----APE-VDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 198 kii~~SAT~-~~~~~~~~f~~~---~v~--~i~gr~~~v~~---~~~~----~~~-~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
.+|++|||+ ..+.|..+.+.. ... .....+++... .+.+ .+. ..+.......+..+.... +|.+|
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCEE
Confidence 589999999 445555555422 111 22222222111 1211 111 245555555566655544 56999
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCc-EEEEeCCCCccccccCCe--eEE
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERAR-KVVLATNIAETSLTIDGI--KYV 340 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~-kVivaT~iae~gidIp~v--~~V 340 (582)
||+|+.+..+.+.+.+.+... ...+..+|.-+.+ .+++.|..+.- -++|+|..+..|||+|+= +.|
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~--------~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERS--------TLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCc--------cceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEE
Confidence 999999999999999876321 1244556666555 33444433333 899999999999999976 455
Q ss_pred EeCCcccce----------eecCCCCc--ccccccccCHHhHHHHhcCCCCCCC--CeEEEeeC
Q 037717 341 IHPGFAKVK----------SYNPKTGM--ESLLVNPISKASANQRTGLSERTGP--GKCFRLYT 390 (582)
Q Consensus 341 ID~g~~k~~----------~yd~~~~~--~~l~~~~~S~~~~~QR~GRaGR~~~--G~~~~L~~ 390 (582)
|=.|++=.. .|....|. -.....|...-...|-+||+=|... |.++.|=.
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 545554221 11111110 1122345556678999999999765 77766633
No 209
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.75 E-value=0.0041 Score=62.53 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.1
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..++++.||+|+|||+.+
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 356899999999999765
No 210
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0057 Score=64.63 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=25.8
Q ss_pred HHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 154 REIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 154 ~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
..+...|....+.++||||+|.-+ .+..-.++|.+-...+..++|+.
T Consensus 109 ~~~~~~p~~~~~kviIIDEa~~l~--~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 109 DNIYYSPSKSRFKVYLIDEVHMLS--RHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred HHHhcCcccCCceEEEEEChhhcC--HHHHHHHHHHHhcCCCCeEEEEE
Confidence 333344556778999999999433 22222344443333344555554
No 211
>PRK05642 DNA replication initiation factor; Validated
Probab=96.72 E-value=0.0044 Score=61.21 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=51.0
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc-C
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-E 159 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-~ 159 (582)
..+++.|++|+|||.++ ..++..+... | .+++|.+.+-+...... -
T Consensus 46 ~~l~l~G~~G~GKTHLl------------~a~~~~~~~~-----~----------------~~v~y~~~~~~~~~~~~~~ 92 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL------------QAACLRFEQR-----G----------------EPAVYLPLAELLDRGPELL 92 (234)
T ss_pred CeEEEECCCCCCHHHHH------------HHHHHHHHhC-----C----------------CcEEEeeHHHHHhhhHHHH
Confidence 56889999999999654 1222222110 2 23445555444332110 0
Q ss_pred CCCCCCCceEeecccCC-C--cchhHHHHHHHHHHhhCCCceEEEecccCChHHH
Q 037717 160 PSLESYSVLIVDEAQER-T--LSTDNLFGLLKDLINYRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 160 ~~l~~~~~vViDE~HeR-~--~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~ 211 (582)
..+.+++++|||++|-- + -..+.++.++..... .-+.++++++..+..+
T Consensus 93 ~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~---~g~~ilits~~~p~~l 144 (234)
T PRK05642 93 DNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRD---SGRRLLLAASKSPREL 144 (234)
T ss_pred HhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHh---cCCEEEEeCCCCHHHc
Confidence 12567799999999922 1 112345666655332 2245677777644443
No 212
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.72 E-value=0.026 Score=66.71 Aligned_cols=116 Identities=22% Similarity=0.128 Sum_probs=68.6
Q ss_pred CeEEEECCCCCchhchH---hhhhcc-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecc------c-CC
Q 037717 81 PVLAIVGETGSGKTTQI---PQYLYE-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED------C-TS 139 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i---p~~ll~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~------~-~~ 139 (582)
+.-+|.--||||||..+ ...+++ -|+.+-.|+...+..-..... . ++ +.++ . ..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~-~~---~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-N-DP---KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhh-h-cc---cccCHHHHHHHHhc
Confidence 34788888999999322 222333 678888887666554321110 0 00 0011 0 11
Q ss_pred CCccEEEEChHHHHHHHHcCC-C-C-CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 140 DKTVLKYMTDCMLLREIVIEP-S-L-ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 140 ~~t~I~~~T~g~Ll~~l~~~~-~-l-~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
....|+++|-.-+-....... . + .+==+||+|||| |+-.. .+-..++.. .++...+++|.|+
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G-~~~~~~~~~---~~~a~~~gFTGTP 413 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYG-ELAKLLKKA---LKKAIFIGFTGTP 413 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechh-hcccc-HHHHHHHHH---hccceEEEeeCCc
Confidence 246899999887776665431 1 2 222368999999 77554 334444543 3568999999999
No 213
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.013 Score=64.09 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHHHcCCCCCCCCceEeecccCC
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQER 176 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR 176 (582)
++......|...++.++||||+|.-
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~L 140 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHML 140 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhhc
Confidence 3344445566788999999999943
No 214
>PHA02244 ATPase-like protein
Probab=96.66 E-value=0.0058 Score=63.59 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 69 FWEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 69 ~~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
....+...+..+..+++.||||||||+.+
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34566777888999999999999999665
No 215
>PRK04296 thymidine kinase; Provisional
Probab=96.65 E-value=0.017 Score=55.13 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.3
Q ss_pred CCeEEEECCCCCchhchHhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~ 99 (582)
+...+++||+|+||||.+-.
T Consensus 2 g~i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred cEEEEEECCCCCHHHHHHHH
Confidence 45789999999999987633
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.65 E-value=0.009 Score=59.09 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.||+|||||+++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999765
No 217
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.0092 Score=66.32 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=27.9
Q ss_pred HHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 155 EIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 155 ~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
.+...+....++++||||+|.- +....-.+||.+-.-.+++++|+.|
T Consensus 115 ~~~~~P~~gr~KViIIDEah~L--s~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHML--TNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHhchhcCCceEEEEEChHhc--CHHHHHHHHHhhccCCCCceEEEEe
Confidence 3333445678999999999943 3344445566433333456666654
No 218
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.63 E-value=0.0022 Score=68.55 Aligned_cols=96 Identities=28% Similarity=0.329 Sum_probs=51.0
Q ss_pred CCCChHHHHHHHHHHh--CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHH-h-CCccCcEEeEEEeecccC
Q 037717 63 TLPIYPFWEELLQAVS--GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQE-M-GVKLGHEVGYSIRFEDCT 138 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~--~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~-~-~~~~g~~vgy~v~~~~~~ 138 (582)
.|...+++.+.+..+. .+-.++|+|||||||||.+-.++. ++... . -..+-+.|-|.+.+-...
T Consensus 239 ~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~------------~ln~~~~nI~TiEDPVE~~~~gI~Q~ 306 (500)
T COG2804 239 KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALS------------ELNTPERNIITIEDPVEYQLPGINQV 306 (500)
T ss_pred HhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHH------------HhcCCCceEEEeeCCeeeecCCccee
Confidence 3455566655554443 345789999999999977633211 11100 0 011223344443322222
Q ss_pred --CCCccEEEEChHHHHHHH-HcCCCCCCCCceEeecccCCCcch
Q 037717 139 --SDKTVLKYMTDCMLLREI-VIEPSLESYSVLIVDEAQERTLST 180 (582)
Q Consensus 139 --~~~t~I~~~T~g~Ll~~l-~~~~~l~~~~~vViDE~HeR~~~~ 180 (582)
+++.. +|....++.+ ..+| ++|+|.|+ |+..|
T Consensus 307 qVN~k~g---ltfa~~LRa~LRqDP-----DvImVGEI--RD~ET 341 (500)
T COG2804 307 QVNPKIG---LTFARALRAILRQDP-----DVIMVGEI--RDLET 341 (500)
T ss_pred ecccccC---CCHHHHHHHHhccCC-----CeEEEecc--CCHHH
Confidence 22222 3444555544 4566 89999999 66655
No 219
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.0032 Score=70.53 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=30.2
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHH
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEK 210 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~ 210 (582)
+..+...+.-..+.++||||+|.. ..+..-.+||.+-.-.++.++|+. |-+...
T Consensus 108 i~~~~~~p~~g~~KV~IIDEah~L--s~~a~NALLKtLEEPp~~v~FIL~--Tt~~~k 161 (647)
T PRK07994 108 LDNVQYAPARGRFKVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLA--TTDPQK 161 (647)
T ss_pred HHHHHhhhhcCCCEEEEEechHhC--CHHHHHHHHHHHHcCCCCeEEEEe--cCCccc
Confidence 333334445678999999999943 334445555544332334555554 444443
No 220
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.58 E-value=0.024 Score=59.05 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=20.0
Q ss_pred HHHHHHHhCCC--eEEEECCCCCchhchH
Q 037717 71 EELLQAVSGYP--VLAIVGETGSGKTTQI 97 (582)
Q Consensus 71 ~~il~~i~~~~--~viv~a~TGSGKTt~i 97 (582)
+.+..++..++ .+++.||+|+|||+.+
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 33444555555 7999999999999765
No 221
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.0098 Score=65.65 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
++..+...|...++.++||||+|.-+ .+..-.++|.+-.-.+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~ls--~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHMLS--KQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhhcc--HHHHHHHHHHHhcCCCCceEEEEE
Confidence 44555555667789999999999433 233333444333222345566543
No 222
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.01 Score=68.14 Aligned_cols=49 Identities=31% Similarity=0.457 Sum_probs=28.9
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHH
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~ 211 (582)
.+.-..+.++||||||.. ..+..-.+||.+-.-.+++++|+. |-+...+
T Consensus 114 ~P~~gk~KViIIDEAh~L--T~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHML--SRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred hhhcCCcEEEEEechHhc--CHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 344567899999999943 344445555554333345666664 5544443
No 223
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.015 Score=63.03 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc----------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE----------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT 142 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~----------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t 142 (582)
.++++.++||||+||||.+-.+... +.|+.|......+++.++..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv------------------ 316 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV------------------ 316 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe------------------
Confidence 4678999999999999877543210 444444444444444443211
Q ss_pred cEEEE-ChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecccCChHH---HHhhhC
Q 037717 143 VLKYM-TDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSATLDAEK---FSDYFG 216 (582)
Q Consensus 143 ~I~~~-T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SAT~~~~~---~~~~f~ 216 (582)
... +..-+...+ ..+.++++++||.+= |+.....+...+..+.... |.-.++.++||..... ..+.|.
T Consensus 317 --~~~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 317 --HAVKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred --eccCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 111 111122222 246788999999974 5443322222333222211 3347888999985544 444554
No 224
>PRK12377 putative replication protein; Provisional
Probab=96.51 E-value=0.013 Score=58.37 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.7
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.|++|+|||+++
T Consensus 100 ~~~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 3468999999999999653
No 225
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.50 E-value=0.021 Score=56.06 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.6
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..++.+++.||+|+|||+++
T Consensus 40 ~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568999999999999665
No 226
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.014 Score=65.11 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=18.9
Q ss_pred HHHHHHhCC---CeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGY---PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~---~~viv~a~TGSGKTt~i 97 (582)
.+..++..+ +.++++||.|+||||.+
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 344555555 35799999999999664
No 227
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0063 Score=61.14 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=39.9
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCc-------EEeEEEeecccCCCCccEEEEChHHH
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGH-------EVGYSIRFEDCTSDKTVLKYMTDCML 152 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~-------~vgy~v~~~~~~~~~t~I~~~T~g~L 152 (582)
..++++.||||||||.++ +-+|+.++.++.. +.||.- ++ -..+|
T Consensus 97 KSNILLiGPTGsGKTlLA----------------qTLAk~LnVPFaiADATtLTEAGYVG--ED-----------VENil 147 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA----------------QTLAKILNVPFAIADATTLTEAGYVG--ED-----------VENIL 147 (408)
T ss_pred eccEEEECCCCCcHHHHH----------------HHHHHHhCCCeeeccccchhhccccc--hh-----------HHHHH
Confidence 346889999999999432 4556666654321 123311 11 02466
Q ss_pred HHHHHcCCC---CCCCCceEeeccc
Q 037717 153 LREIVIEPS---LESYSVLIVDEAQ 174 (582)
Q Consensus 153 l~~l~~~~~---l~~~~~vViDE~H 174 (582)
++.+..... -..-+.|.|||++
T Consensus 148 lkLlqaadydV~rAerGIIyIDEID 172 (408)
T COG1219 148 LKLLQAADYDVERAERGIIYIDEID 172 (408)
T ss_pred HHHHHHcccCHHHHhCCeEEEechh
Confidence 776654322 4567899999999
No 228
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.42 E-value=0.003 Score=65.22 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=22.9
Q ss_pred HHHHH-HHHhCCCeEEEECCCCCchhchH
Q 037717 70 WEELL-QAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 70 ~~~il-~~i~~~~~viv~a~TGSGKTt~i 97 (582)
+.+++ .++..+.+++|+|+|||||||.+
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 34444 56788999999999999999876
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.42 E-value=0.01 Score=59.67 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 67 YPFWEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 67 ~~~~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
....+.++..+..+..+++.||+|+|||+.+
T Consensus 8 ~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 8 KRVTSRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 3455677888889999999999999999654
No 230
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.017 Score=63.62 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=24.9
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
.|.-.+++++||||||.-+ .+..-.++|.+-.-.++.++|+.
T Consensus 114 ~p~~~~~kV~iIDE~~~ls--~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 114 APTKGRFKVYLIDEVHMLS--GHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCcEEEEEEChHhcC--HHHHHHHHHHHhccCCCeEEEEE
Confidence 4556789999999999433 33344455543333345666654
No 231
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.017 Score=64.93 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=26.3
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
.+.+.+++++||||+|.- ..+..-.++|.+-...+..++|+.+
T Consensus 114 ~P~~gk~KVIIIDEad~L--s~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVHML--SKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECcccc--CHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 455678999999999942 3333334455443334456676654
No 232
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.011 Score=64.29 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=27.9
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
+......|...++.++||||+|.-+ .+..-.++|.+-.-.+..++|+.
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~Ls--~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHMLS--NSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred HHHHHhccccCCceEEEEeChHhCC--HHHHHHHHHHHhCCCCCeEEEEE
Confidence 3344455667899999999999433 23333444443333344555554
No 233
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.40 E-value=0.0079 Score=65.50 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=51.5
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc--
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-- 158 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-- 158 (582)
+.+++.||+|+|||+++ ..++..+.+.. ++..++|.|...+.+.+..
T Consensus 149 ~~l~l~G~~G~GKThL~------------~ai~~~~~~~~-------------------~~~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL------------HAIGNYILEKN-------------------PNAKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHH------------HHHHHHHHHhC-------------------CCCeEEEEEHHHHHHHHHHHH
Confidence 45899999999999654 22333332210 1234556665544433221
Q ss_pred --CC------CCCCCCceEeecccCCCc---chhHHHHHHHHHHhhCCCceEEEecccCChHH
Q 037717 159 --EP------SLESYSVLIVDEAQERTL---STDNLFGLLKDLINYRPDLKLLISSATLDAEK 210 (582)
Q Consensus 159 --~~------~l~~~~~vViDE~HeR~~---~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~ 210 (582)
.. .+.++++|||||+|.-.- ..+.++..+..+... . +.++++++..+..
T Consensus 198 ~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~-~~iiits~~~p~~ 257 (450)
T PRK00149 198 RNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--G-KQIVLTSDRPPKE 257 (450)
T ss_pred HcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--C-CcEEEECCCCHHH
Confidence 11 255789999999993221 123455555554432 2 3355556554433
No 234
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.39 E-value=0.0054 Score=66.40 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHhCC-CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAVSGY-PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVS 117 (582)
Q Consensus 66 i~~~~~~il~~i~~~-~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va 117 (582)
..+.|.+++.....+ ...+|.||+|+|||+.+-.++.. |+.+++-.+..|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 456778888777666 78899999999999544433332 88888777766543
No 235
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.015 Score=63.26 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=18.2
Q ss_pred HHHHHhCCCe---EEEECCCCCchhchH
Q 037717 73 LLQAVSGYPV---LAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~~~~~---viv~a~TGSGKTt~i 97 (582)
+..++..++. ++++||+|+||||.+
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3344555543 799999999999765
No 236
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.34 E-value=0.0038 Score=58.26 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC--CCccccccC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATN--IAETSLTID 335 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~--iae~gidIp 335 (582)
.+|.+|||+|+.+..+.+.+.+...... .++.+..- ...+...+.+.|.++.--|++|+. ....|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3589999999999999998887653211 11222211 244667777888888889999998 888899999
Q ss_pred C--eeEEEeCCcccceeecCCCC------------cccccccccCHHhHHHHhcCCCCCCCCeEEEee
Q 037717 336 G--IKYVIHPGFAKVKSYNPKTG------------MESLLVNPISKASANQRTGLSERTGPGKCFRLY 389 (582)
Q Consensus 336 ~--v~~VID~g~~k~~~yd~~~~------------~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~ 389 (582)
+ .+.||=.|++-....|+... -......|...-...|-+||+=|...-.+..+.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l 146 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIIL 146 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEE
Confidence 6 77788777764332222100 001112233345678999999998874444433
No 237
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.34 E-value=0.011 Score=67.69 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCccEEEEChHHHHHHHH--cCCCCCC--CCceEeeccc
Q 037717 140 DKTVLKYMTDCMLLREIV--IEPSLES--YSVLIVDEAQ 174 (582)
Q Consensus 140 ~~t~I~~~T~g~Ll~~l~--~~~~l~~--~~~vViDE~H 174 (582)
..++|+|+....|+..+. .+..|.+ ++++||||||
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH 256 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGH 256 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECcc
Confidence 467899999999988774 2345654 7889999999
No 238
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.30 E-value=0.0062 Score=59.53 Aligned_cols=93 Identities=25% Similarity=0.369 Sum_probs=56.3
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc--
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-- 158 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-- 158 (582)
+.++|.||+|+|||.++ .+++..+.+. .++.+++|.+..-+.+.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL------------~Ai~~~~~~~-------------------~~~~~v~y~~~~~f~~~~~~~~ 83 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLL------------QAIANEAQKQ-------------------HPGKRVVYLSAEEFIREFADAL 83 (219)
T ss_dssp SEEEEEESTTSSHHHHH------------HHHHHHHHHH-------------------CTTS-EEEEEHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHH------------HHHHHHHHhc-------------------cccccceeecHHHHHHHHHHHH
Confidence 45899999999999654 2223333221 12457888887766554432
Q ss_pred --CC------CCCCCCceEeecccCCCc---chhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 159 --EP------SLESYSVLIVDEAQERTL---STDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 159 --~~------~l~~~~~vViDE~HeR~~---~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
+. .+.++++|+||.+|.-.- ..+.++.++..+... +-++|+.|...
T Consensus 84 ~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~ 140 (219)
T PF00308_consen 84 RDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRP 140 (219)
T ss_dssp HTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-
T ss_pred HcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCC
Confidence 11 167899999999994322 235666666665543 34666666443
No 239
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.027 Score=63.11 Aligned_cols=50 Identities=26% Similarity=0.459 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
+...+...|....+++|||||+|.-+ .+..-.++|.+-.-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~Ls--~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHMLS--TAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHhCC--HHHHHHHHHHHHhCCCCeEEEEEe
Confidence 34444456668899999999999443 222333444433333456666644
No 240
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.29 E-value=0.0079 Score=60.49 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=17.3
Q ss_pred CCeEEEECCCCCchhchHhhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ 100 (582)
...++++||+||||||.+-.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 447999999999999887544
No 241
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.28 E-value=0.0093 Score=64.02 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=52.7
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHH---
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIV--- 157 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~--- 157 (582)
+.+++.|++|+|||+++ ..++..+.+. . ++..++|.|..-+.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~------------~ai~~~l~~~---~----------------~~~~v~yi~~~~~~~~~~~~~ 185 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL------------HAIGNEILEN---N----------------PNAKVVYVSSEKFTNDFVNAL 185 (405)
T ss_pred CeEEEECCCCCcHHHHH------------HHHHHHHHHh---C----------------CCCcEEEEEHHHHHHHHHHHH
Confidence 45889999999999654 2233333221 0 123455555544433221
Q ss_pred -cC------CCCCCCCceEeecccCCCc---chhHHHHHHHHHHhhCCCceEEEecccCChHHHHh
Q 037717 158 -IE------PSLESYSVLIVDEAQERTL---STDNLFGLLKDLINYRPDLKLLISSATLDAEKFSD 213 (582)
Q Consensus 158 -~~------~~l~~~~~vViDE~HeR~~---~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~ 213 (582)
.+ ..+.++++|||||+|.-.- ..+.++..+...... + +.++++++..+..+..
T Consensus 186 ~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~-~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 186 RNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN--G-KQIVLTSDRPPKELPG 248 (405)
T ss_pred HcCCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--C-CCEEEecCCCHHHHhh
Confidence 11 0145678999999993211 123455555554332 2 3355666665555544
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.28 E-value=0.035 Score=57.08 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
.++.+++.|++|+|||+++ ..++..++. . |. .+.|.+...|++.+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa------------~Aia~~l~~-~----g~----------------~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLL------------AAIANELAK-K----GV----------------SSTLLHFPEFIRELKN 201 (306)
T ss_pred CCCeEEEECCCCCCHHHHH------------HHHHHHHHH-c----CC----------------CEEEEEHHHHHHHHHH
Confidence 3568999999999999654 334444432 1 21 2233333333333321
Q ss_pred ---CC-------CCCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecccCChHHHHhhh
Q 037717 159 ---EP-------SLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 159 ---~~-------~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SAT~~~~~~~~~f 215 (582)
+. .+.++++|||||+.--.......-.++-.++..| .+-+-.++|.-++.+.+.+.|
T Consensus 202 ~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 202 SISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred HHhcCcHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 11 1678999999999822222111111222222222 122344455556777788777
No 243
>PRK09087 hypothetical protein; Validated
Probab=96.28 E-value=0.02 Score=56.27 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=25.8
Q ss_pred CceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChH
Q 037717 166 SVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAE 209 (582)
Q Consensus 166 ~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~ 209 (582)
++|+||++|....+.+.++.++..+... . +.++++++..+.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~--g-~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQA--G-TSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhC--C-CeEEEECCCChH
Confidence 6899999995544556666766665442 2 456666665333
No 244
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.27 E-value=0.019 Score=62.13 Aligned_cols=94 Identities=16% Similarity=0.292 Sum_probs=51.8
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHH---
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIV--- 157 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~--- 157 (582)
+.+++.||+|+|||+++ ..++..+... +.+++|++...+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl------------~Ai~~~l~~~---------------------~~~v~yi~~~~f~~~~~~~l 188 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM------------QAAVHALRES---------------------GGKILYVRSELFTEHLVSAI 188 (445)
T ss_pred ceEEEEcCCCCCHHHHH------------HHHHHHHHHc---------------------CCCEEEeeHHHHHHHHHHHH
Confidence 45899999999999664 2223332211 13456666655544332
Q ss_pred -cC------CCCCCCCceEeecccCCC---cchhHHHHHHHHHHhhCCCceEEEecccCChHH
Q 037717 158 -IE------PSLESYSVLIVDEAQERT---LSTDNLFGLLKDLINYRPDLKLLISSATLDAEK 210 (582)
Q Consensus 158 -~~------~~l~~~~~vViDE~HeR~---~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~ 210 (582)
.+ ..+.++++|+|||+|.-. ...+.++..+...... . +.|+++++..+..
T Consensus 189 ~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~--~-k~IIlts~~~p~~ 248 (445)
T PRK12422 189 RSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE--G-KLIVISSTCAPQD 248 (445)
T ss_pred hcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC--C-CcEEEecCCCHHH
Confidence 11 115678999999999322 2234455555544321 2 3455555543433
No 245
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.26 E-value=0.024 Score=57.23 Aligned_cols=112 Identities=25% Similarity=0.322 Sum_probs=59.8
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccE
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVL 144 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I 144 (582)
..++++++|++|+||||.+-.+... +.|..+.......++.++..+ +.. .. ..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~-----~~~--~~--~~---- 137 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV-----IKQ--KE--GA---- 137 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE-----EeC--CC--CC----
Confidence 3568889999999999866443211 445555444444444443110 000 00 00
Q ss_pred EEECh-HHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-------hCCCceEEEecccCCh
Q 037717 145 KYMTD-CMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-------YRPDLKLLISSATLDA 208 (582)
Q Consensus 145 ~~~T~-g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-------~~~~~kii~~SAT~~~ 208 (582)
-| ....+.+. .....++++||||=+- |...-..++.-++.+.+ ..++-.++.++||...
T Consensus 138 ---dp~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 138 ---DPAAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred ---CHHHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 11 12222221 1124678999999997 54443344444444432 1267788999999843
No 246
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.24 E-value=0.0061 Score=58.97 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=40.0
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
..+++.||+|+||||++ .-+|.+++..+-...|- . +--++-|...+.
T Consensus 51 ~h~lf~GPPG~GKTTLA----------------~IIA~e~~~~~~~~sg~------~--------i~k~~dl~~il~--- 97 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA----------------RIIANELGVNFKITSGP------A--------IEKAGDLAAILT--- 97 (233)
T ss_dssp -EEEEESSTTSSHHHHH----------------HHHHHHCT--EEEEECC------C----------SCHHHHHHHH---
T ss_pred ceEEEECCCccchhHHH----------------HHHHhccCCCeEeccch------h--------hhhHHHHHHHHH---
Confidence 47999999999999664 55677777554211110 0 111333333332
Q ss_pred CCCCCCceEeecccCCCc-chhHHHHHHH
Q 037717 161 SLESYSVLIVDEAQERTL-STDNLFGLLK 188 (582)
Q Consensus 161 ~l~~~~~vViDE~HeR~~-~~d~ll~~lk 188 (582)
.+..-+++.|||+|.-.- ..|+++..+.
T Consensus 98 ~l~~~~ILFIDEIHRlnk~~qe~LlpamE 126 (233)
T PF05496_consen 98 NLKEGDILFIDEIHRLNKAQQEILLPAME 126 (233)
T ss_dssp T--TT-EEEECTCCC--HHHHHHHHHHHH
T ss_pred hcCCCcEEEEechhhccHHHHHHHHHHhc
Confidence 245568999999994332 2455555553
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.24 E-value=0.025 Score=60.51 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=63.6
Q ss_pred CeEEEECCCCCchhchHhhhhc--------------cchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEE
Q 037717 81 PVLAIVGETGSGKTTQIPQYLY--------------EPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKY 146 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll--------------~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~ 146 (582)
.+++++|++||||||.+-.+.. +|.|.+|....+..+...+.++ +... ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~-----~~------ 164 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSY-----TE------ 164 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----Eeec-----CC------
Confidence 5789999999999987654421 1666666555444444333221 1000 00
Q ss_pred ECh-HHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccC--ChHHHHhhh
Q 037717 147 MTD-CMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATL--DAEKFSDYF 215 (582)
Q Consensus 147 ~T~-g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~--~~~~~~~~f 215 (582)
..| .+..+.+.. ..-.++++||||=+- |...-+-++.-++.+.. ..|+-.+++++||. +....++-|
T Consensus 165 ~dp~~i~~~~l~~-~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 165 SDPVKIASEGVEK-FKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCHHHHHHHHHHH-HHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 011 111111110 012468999999997 55444455666665543 34677888889987 343344444
No 248
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.016 Score=67.20 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=25.6
Q ss_pred cCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 158 IEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 158 ~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
..+....++++||||+|..+ .+..-.+||.+-.-...+.+|+.+
T Consensus 114 ~~p~~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hchhcCCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34556789999999999443 333334444433333455556543
No 249
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.025 Score=62.61 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
+......|...++.++||||+|.-+. +..-.++|.+-...+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~ls~--~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCcccCCH--HHHHHHHHHHhCCCCCEEEEEEe
Confidence 33444456678899999999994432 23333444433333456666643
No 250
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.025 Score=63.00 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=27.9
Q ss_pred HHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 154 REIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 154 ~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
..+...|....+.++||||+|.- ..+..-.++|.+-.-.+...+|+.+
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~L--t~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHMV--TTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCcC--CHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 33444566789999999999943 3334444455443333355555543
No 251
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.12 E-value=0.02 Score=62.09 Aligned_cols=98 Identities=24% Similarity=0.328 Sum_probs=52.8
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc--
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-- 158 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-- 158 (582)
+.+++.||+|+|||+++ ..++..+.+. .++.+++|.|...+++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl------------~ai~~~l~~~-------------------~~~~~v~yi~~~~f~~~~~~~~ 179 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL------------QSIGNYVVQN-------------------EPDLRVMYITSEKFLNDLVDSM 179 (440)
T ss_pred CeEEEEcCCCCcHHHHH------------HHHHHHHHHh-------------------CCCCeEEEEEHHHHHHHHHHHH
Confidence 45899999999999654 2233333221 01245667776665554421
Q ss_pred --CCC------C-CCCCceEeecccCCC-c--chhHHHHHHHHHHhhCCCceEEEecccCChHHHH
Q 037717 159 --EPS------L-ESYSVLIVDEAQERT-L--STDNLFGLLKDLINYRPDLKLLISSATLDAEKFS 212 (582)
Q Consensus 159 --~~~------l-~~~~~vViDE~HeR~-~--~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~ 212 (582)
+.. + .+.++|+|||+|.-. - ..+.++..+..+... . +.++++++-++..+.
T Consensus 180 ~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~-k~iIitsd~~p~~l~ 242 (440)
T PRK14088 180 KEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--G-KQIVICSDREPQKLS 242 (440)
T ss_pred hcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--C-CeEEEECCCCHHHHH
Confidence 110 1 257899999999221 1 123345555554432 2 345555555555443
No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.05 Score=54.41 Aligned_cols=107 Identities=25% Similarity=0.420 Sum_probs=61.1
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHH
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCML 152 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~L 152 (582)
+.+.+..+.++++.|++|+|||.+ |..++.+++ .. | -+++|.|..-|
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKThL------------a~Ai~~~l~-~~----g----------------~sv~f~~~~el 144 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTHL------------AIAIGNELL-KA----G----------------ISVLFITAPDL 144 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHHH------------HHHHHHHHH-Hc----C----------------CeEEEEEHHHH
Confidence 334455788999999999999954 455556655 22 2 22344444334
Q ss_pred HHHHHc---C-C-------CCCCCCceEeecccCCCc---chhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhC
Q 037717 153 LREIVI---E-P-------SLESYSVLIVDEAQERTL---STDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFG 216 (582)
Q Consensus 153 l~~l~~---~-~-------~l~~~~~vViDE~HeR~~---~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~ 216 (582)
++.+.. + . .+.+++++||||+=-... ..+.++.++-.....+ +. +++.-.+.+.+.+-|+
T Consensus 145 ~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 145 LSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELFG 218 (254)
T ss_pred HHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhcc
Confidence 433322 1 1 178899999999972221 2345555544433222 22 4555556666666665
No 253
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.10 E-value=0.055 Score=55.89 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEec
Q 037717 160 PSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISS 203 (582)
Q Consensus 160 ~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~S 203 (582)
+.....++|||||+|.-+.. + ....++..+... ++.++|+.+
T Consensus 96 ~~~~~~~vliiDe~d~l~~~-~-~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 96 SLTGGGKVIIIDEFDRLGLA-D-AQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred cccCCCeEEEEECcccccCH-H-HHHHHHHHHHhcCCCceEEEEc
Confidence 33467899999999943121 1 234445544433 345565533
No 254
>CHL00181 cbbX CbbX; Provisional
Probab=96.07 E-value=0.037 Score=56.39 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+-++++.||+|+|||+.+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999664
No 255
>PHA00729 NTP-binding motif containing protein
Probab=96.06 E-value=0.009 Score=58.14 Aligned_cols=81 Identities=25% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHHHHhCC--CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChH
Q 037717 73 LLQAVSGY--PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDC 150 (582)
Q Consensus 73 il~~i~~~--~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g 150 (582)
+++.+.++ .+++|+|++|+|||+++ ..++.++. ..++..... +....+.-...|.+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA------------~aLa~~l~----~~l~~l~~~----~~~~d~~~~~~fid~~ 67 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYA------------LKVARDVF----WKLNNLSTK----DDAWQYVQNSYFFELP 67 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHH------------HHHHHHHH----hhcccccch----hhHHhcCCcEEEEEHH
Confidence 44444433 36999999999999664 33334332 222111110 1111223345666666
Q ss_pred HHHHHHHcC-CCCCCCCceEeecc
Q 037717 151 MLLREIVIE-PSLESYSVLIVDEA 173 (582)
Q Consensus 151 ~Ll~~l~~~-~~l~~~~~vViDE~ 173 (582)
-|++.+... .....++++||||+
T Consensus 68 ~Ll~~L~~a~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 68 DALEKIQDAIDNDYRIPLIIFDDA 91 (226)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCC
Confidence 676666421 11345688999994
No 256
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.02 E-value=0.022 Score=51.77 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=48.6
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEE---EChHHHH
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKY---MTDCMLL 153 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~---~T~g~Ll 153 (582)
+..++.+.|.|+.||||||.+-.+ +......-| . +.++.. ..+-| .+.|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l----------------~G~~~~~~G-~----i~~~~~----~~i~~~~~lS~G~~~ 77 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLI----------------AGELEPDEG-I----VTWGST----VKIGYFEQLSGGEKM 77 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH----------------cCCCCCCce-E----EEECCe----EEEEEEccCCHHHHH
Confidence 457899999999999999877332 111111111 1 111110 12222 5567666
Q ss_pred HHHHcCCCCCCCCceEeecccCCCcchhHHHHH
Q 037717 154 REIVIEPSLESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 154 ~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
+.......+.+-+++++||.- .+++.+....+
T Consensus 78 rv~laral~~~p~illlDEP~-~~LD~~~~~~l 109 (144)
T cd03221 78 RLALAKLLLENPNLLLLDEPT-NHLDLESIEAL 109 (144)
T ss_pred HHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHH
Confidence 555545556677999999996 66665543333
No 257
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.00 E-value=0.02 Score=58.30 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+..+++.||+|+|||+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 346899999999999664
No 258
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.019 Score=52.73 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=50.3
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc-CC------CCccEEE---
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC-TS------DKTVLKY--- 146 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~-~~------~~t~I~~--- 146 (582)
+..++.+.|.|++||||||.+-.+ +......-| .+ .++.. .. ....+.|
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l----------------~g~~~~~~G-~i----~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAI----------------AGLLKPTSG-EI----LIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH----------------hCCCCCCcc-EE----EECCEEcccCCHHHHHhceEEEee
Confidence 357889999999999999877332 111111111 11 11110 00 0123444
Q ss_pred EChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHH
Q 037717 147 MTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLK 188 (582)
Q Consensus 147 ~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk 188 (582)
.+.|...+.........+.+++++||.- .+++.+....+.+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~ 121 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLE 121 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHH
Confidence 5667665555444445667999999997 6666554433333
No 259
>PRK06620 hypothetical protein; Validated
Probab=95.98 E-value=0.033 Score=54.20 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 163 ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.+.++++|||+|.. ....++.++..+... . +.+++|||-
T Consensus 84 ~~~d~lliDdi~~~--~~~~lf~l~N~~~e~--g-~~ilits~~ 122 (214)
T PRK06620 84 EKYNAFIIEDIENW--QEPALLHIFNIINEK--Q-KYLLLTSSD 122 (214)
T ss_pred hcCCEEEEeccccc--hHHHHHHHHHHHHhc--C-CEEEEEcCC
Confidence 45589999999932 334566666655442 2 345555554
No 260
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.93 E-value=0.022 Score=61.89 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=48.2
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc--
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-- 158 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-- 158 (582)
+.+++.|++|+|||+++ ..++..+... .++.+++|.|.+.+.+.+..
T Consensus 142 npl~i~G~~G~GKTHLl------------~Ai~~~l~~~-------------------~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL------------KAAKNYIESN-------------------FSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH------------HHHHHHHHHh-------------------CCCCeEEEEEHHHHHHHHHHHH
Confidence 45889999999999665 1222222211 11245667777666655431
Q ss_pred -C---C------CCCCCCceEeecccCCC---cchhHHHHHHHHHHh
Q 037717 159 -E---P------SLESYSVLIVDEAQERT---LSTDNLFGLLKDLIN 192 (582)
Q Consensus 159 -~---~------~l~~~~~vViDE~HeR~---~~~d~ll~~lk~~~~ 192 (582)
. . .+.++++|||||+|.-. -..+.++.++.....
T Consensus 191 ~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~ 237 (450)
T PRK14087 191 QKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE 237 (450)
T ss_pred HHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH
Confidence 1 0 15678999999999332 223556666666544
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.91 E-value=0.027 Score=60.56 Aligned_cols=107 Identities=25% Similarity=0.351 Sum_probs=57.5
Q ss_pred CCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
..+++++|++|+||||.+-.+... +.|.+|......++...+.++ |. ... .
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~-----~~---~~~---~---- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF-----YG---DPD---N---- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE-----Ee---cCC---c----
Confidence 457889999999999876543211 444545444444444433221 00 000 0
Q ss_pred EECh-HHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccC
Q 037717 146 YMTD-CMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATL 206 (582)
Q Consensus 146 ~~T~-g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~ 206 (582)
..+ ..+.+.+.. +..+++||||.+- |....+.++.-++.+.. ..|+.-++.++||.
T Consensus 160 -~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 160 -KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred -cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 011 222222221 2345999999996 44344455555555433 34777788888877
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.91 E-value=0.017 Score=58.74 Aligned_cols=21 Identities=48% Similarity=0.664 Sum_probs=17.2
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+++++++||||+||||.+-.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356899999999999987643
No 263
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.023 Score=60.85 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHcCCCCCCCCceEeecccCCC
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERT 177 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~ 177 (582)
...+...|...++.++||||+|.-+
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~ 140 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLS 140 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCC
Confidence 3444455678899999999999443
No 264
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.022 Score=63.77 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=27.3
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
+......+....++++||||+|.- ..+..-.++|.+-.-.+..++|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~L--s~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHML--TNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhhC--CHHHHHHHHHhcccCCCCeEEEEEE
Confidence 334444555778999999999943 3333333444332222345666543
No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.022 Score=59.66 Aligned_cols=27 Identities=33% Similarity=0.256 Sum_probs=21.3
Q ss_pred HHHHHHHhCCC---eEEEECCCCCchhchH
Q 037717 71 EELLQAVSGYP---VLAIVGETGSGKTTQI 97 (582)
Q Consensus 71 ~~il~~i~~~~---~viv~a~TGSGKTt~i 97 (582)
..+..++..++ .++++||+|+||||.+
T Consensus 33 ~~L~~a~~~grl~ha~L~~G~~G~GKttlA 62 (351)
T PRK09112 33 AFLAQAYREGKLHHALLFEGPEGIGKATLA 62 (351)
T ss_pred HHHHHHHHcCCCCeeEeeECCCCCCHHHHH
Confidence 45566677766 5999999999999765
No 266
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.039 Score=62.59 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
.+...+...|....+.++||||||.- ..+..-.++|.+
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~L--T~~A~NALLKtL 142 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHML--SKSAFNALLKTL 142 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhhC--CHHHHHHHHHHh
Confidence 34445555666789999999999943 333444444443
No 267
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.78 E-value=0.033 Score=59.58 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 69 FWEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 69 ~~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
..+.++.++..++++++.||+|+|||+++
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34567888889999999999999999665
No 268
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.058 Score=59.31 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=24.4
Q ss_pred HcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 157 VIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 157 ~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
...+......+|||||+|.- ..+.+-.+++.+-...+...+|+
T Consensus 109 ~~~p~~~~~kVVIIDEad~l--s~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHMM--SKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred hhccccCCCeEEEEECcccc--CHHHHHHHHHHHHhCCCCEEEEE
Confidence 33456788999999999933 23334444444333223344444
No 269
>PRK04195 replication factor C large subunit; Provisional
Probab=95.68 E-value=0.066 Score=58.84 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+||||.+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999665
No 270
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.67 E-value=0.061 Score=52.35 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=74.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHhC---CCeEEEECCCCCchhc-hHhhhhc---c---------chHHHHHHHHHHHHHHh
Q 037717 57 LQEERKTLPIYPFWEELLQAVSG---YPVLAIVGETGSGKTT-QIPQYLY---E---------PRWVAAMSVAARVSQEM 120 (582)
Q Consensus 57 ~~~~r~~lPi~~~~~~il~~i~~---~~~viv~a~TGSGKTt-~ip~~ll---~---------P~r~~a~~~a~~va~~~ 120 (582)
+.+....+=+.+.|.++...+.+ +++.+...-.|.|||+ .+|...+ + | +.+..+..+-+...+
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 56677888899999999988875 4688999999999995 5565432 3 3 234444444444444
Q ss_pred CCccCcEEeEEEeecccCC-----------------CCccEEEEChHHHHHHHHc-------C-C-----------CCCC
Q 037717 121 GVKLGHEVGYSIRFEDCTS-----------------DKTVLKYMTDCMLLREIVI-------E-P-----------SLES 164 (582)
Q Consensus 121 ~~~~g~~vgy~v~~~~~~~-----------------~~t~I~~~T~g~Ll~~l~~-------~-~-----------~l~~ 164 (582)
+.-++..| |.+.|+..+. ....|+++||+.++...+. . + .+.+
T Consensus 94 g~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~ 172 (229)
T PF12340_consen 94 GGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDE 172 (229)
T ss_pred HHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 44444433 5566665432 2456999999877643221 1 0 1345
Q ss_pred CCceEeeccc
Q 037717 165 YSVLIVDEAQ 174 (582)
Q Consensus 165 ~~~vViDE~H 174 (582)
.+-=|+||+|
T Consensus 173 ~~rdilDEsD 182 (229)
T PF12340_consen 173 HSRDILDESD 182 (229)
T ss_pred cCCeEeECch
Confidence 5667999998
No 271
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.66 E-value=0.023 Score=59.98 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=33.2
Q ss_pred HHHHHHHHHH------hCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHH
Q 037717 68 PFWEELLQAV------SGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSV 112 (582)
Q Consensus 68 ~~~~~il~~i------~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~ 112 (582)
+.|+.+++.+ .++.++.|.|+-|+|||+.+-.+... |+.+||..+
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 4566666666 78889999999999999877554321 777777654
No 272
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.66 E-value=0.011 Score=59.22 Aligned_cols=110 Identities=22% Similarity=0.147 Sum_probs=57.7
Q ss_pred cCCCChHHHHHHHHH--HhCCCeEEEECCCCCchhchHhh--hhcc----------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 62 KTLPIYPFWEELLQA--VSGYPVLAIVGETGSGKTTQIPQ--YLYE----------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 62 ~~lPi~~~~~~il~~--i~~~~~viv~a~TGSGKTt~ip~--~ll~----------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
+.+-..++--+++.. +..++ ++.-.||=|||..+.. ++.- ....+|..=++.+..-+ ..+|..
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y-~~LGls 148 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY-EFLGLS 148 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH-HHTT--
T ss_pred HHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH-HHhhhc
Confidence 344455554445544 44555 7788999999954433 2221 33344433333332222 245777
Q ss_pred EeEEEeecccC----CCCccEEEEChHHHHHHHHcC-----C---CCCCCCceEeeccc
Q 037717 128 VGYSIRFEDCT----SDKTVLKYMTDCMLLREIVIE-----P---SLESYSVLIVDEAQ 174 (582)
Q Consensus 128 vgy~v~~~~~~----~~~t~I~~~T~g~Ll~~l~~~-----~---~l~~~~~vViDE~H 174 (582)
||+........ .=..+|+|+|..-+..-.+.+ + ....+.++|||||+
T Consensus 149 v~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 149 VGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred cccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 77754322211 014679999987665432222 1 15789999999998
No 273
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.61 E-value=0.089 Score=57.96 Aligned_cols=43 Identities=26% Similarity=0.489 Sum_probs=26.4
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
.|....+.++||||||.-+ .+..-.++|.+-.-.+..++|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~Lt--~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHMLT--KEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECcccCC--HHHHHHHHHHHhhcCCceEEEEEE
Confidence 4567889999999999443 334344444443333456666644
No 274
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.61 E-value=0.028 Score=56.87 Aligned_cols=34 Identities=38% Similarity=0.639 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhC---------CCeEEEECCCCCchhchHhhh
Q 037717 67 YPFWEELLQAVSG---------YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 67 ~~~~~~il~~i~~---------~~~viv~a~TGSGKTt~ip~~ 100 (582)
|+...++++.+.+ -.+++|+|+||-|||+.+-.|
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF 81 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERF 81 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHH
Confidence 5556666666542 257999999999999877544
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.59 E-value=0.061 Score=57.76 Aligned_cols=109 Identities=27% Similarity=0.354 Sum_probs=57.4
Q ss_pred CeEEEECCCCCchhchHhhh---hc-c-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 81 PVLAIVGETGSGKTTQIPQY---LY-E-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~---ll-~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
.+++++|++||||||.+-.+ +. . ++|.+|.......+...+.++ +... ..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~-----~~~~-----~~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV-----FALG-----KG----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce-----EecC-----CC-----
Confidence 47889999999999775433 11 1 666666555555555443221 0000 00
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATL 206 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~ 206 (582)
..|.-+...........++++||||=+- |...-+.++..++.+.. ..|+--+++++||.
T Consensus 165 -~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0122222222111123568999999997 44433445555554433 23555566667665
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=95.58 E-value=0.071 Score=57.29 Aligned_cols=109 Identities=26% Similarity=0.321 Sum_probs=58.6
Q ss_pred CeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
.+++++|++||||||.+-.+... +.|.+|....+..+...+..+ |... .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~~----~------- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPSG----D------- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----EecC----C-------
Confidence 57889999999999865443211 666666544444454443221 0000 0
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATL 206 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~ 206 (582)
-..|.-+...........++++||||=+= |...-+.++..+..+.. ..|+--++.++|+.
T Consensus 165 ~~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 165 GQDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 01233333322222224578999999996 44333444454444433 23555566677766
No 277
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.024 Score=56.35 Aligned_cols=67 Identities=27% Similarity=0.342 Sum_probs=45.1
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
+.+++.||+|-||||++ .-+|.|||..+..+-|-.+ --||=|...+.
T Consensus 53 DHvLl~GPPGlGKTTLA----------------~IIA~Emgvn~k~tsGp~l--------------eK~gDlaaiLt--- 99 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA----------------HIIANELGVNLKITSGPAL--------------EKPGDLAAILT--- 99 (332)
T ss_pred CeEEeeCCCCCcHHHHH----------------HHHHHHhcCCeEecccccc--------------cChhhHHHHHh---
Confidence 57999999999999765 5578888876543333211 12444555442
Q ss_pred CCCCCCceEeecccCCCcch
Q 037717 161 SLESYSVLIVDEAQERTLST 180 (582)
Q Consensus 161 ~l~~~~~vViDE~HeR~~~~ 180 (582)
.|+.-+++.|||+|.-+...
T Consensus 100 ~Le~~DVLFIDEIHrl~~~v 119 (332)
T COG2255 100 NLEEGDVLFIDEIHRLSPAV 119 (332)
T ss_pred cCCcCCeEEEehhhhcChhH
Confidence 37788999999999544443
No 278
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.033 Score=58.89 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=18.9
Q ss_pred HHHHHHhCC---CeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGY---PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~---~~viv~a~TGSGKTt~i 97 (582)
.+...+..+ +.+++.||+|+|||+.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 344555554 36889999999999665
No 279
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.061 Score=58.94 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCCCCCCceEeecccCC
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQER 176 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~HeR 176 (582)
.+.+.+...|....+.++||||+|.-
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~L 131 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHML 131 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhhc
Confidence 34444455666788999999999943
No 280
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.57 E-value=0.091 Score=57.94 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=94.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC-cEEEEeCCCCccccccC
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA-RKVVLATNIAETSLTID 335 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~-~kVivaT~iae~gidIp 335 (582)
..+..+|+|+.-.+.++.+.++|.. .++.-+.+.|+....+|..+...+.... .-.+++|-....||++-
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~y---------r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVY---------RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHh---------hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 4467899999988888888888876 4777888999999999999988886644 45679999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
+.+.|| .||...+ |.--.++.-|+-|-|.+..-.+|||.++...+.
T Consensus 1113 AADTVi--------FYdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1113 AADTVI--------FYDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred ccceEE--------EecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 999999 7776655 222346778888888888889999999887654
No 281
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.56 E-value=0.026 Score=53.65 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=18.6
Q ss_pred HHHHHcCCCCCCCCceEeecccCCC
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERT 177 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~ 177 (582)
.+.+...+......+|||||+|.-+
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l~ 109 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERMN 109 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhhC
Confidence 4555556667889999999999443
No 282
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.55 E-value=0.098 Score=53.87 Aligned_cols=17 Identities=47% Similarity=0.737 Sum_probs=14.5
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..+++.||+|+|||+.+
T Consensus 39 ~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999665
No 283
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.056 Score=60.33 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=18.7
Q ss_pred HHHHHHhCC---CeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGY---PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~---~~viv~a~TGSGKTt~i 97 (582)
.+..++.++ +.+++.||.|+||||.+
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiA 55 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIA 55 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 344555554 35889999999999665
No 284
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.034 Score=62.33 Aligned_cols=50 Identities=28% Similarity=0.469 Sum_probs=28.0
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
+...+...|...++.++||||+|.-+ .+..-.++|.+-.-.++..+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~Lt--~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHMLS--TNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhhCC--HHHHHHHHHHHHcCCCCeEEEEEe
Confidence 34444445667889999999999433 233333444332223345555533
No 285
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.072 Score=59.92 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.6
Q ss_pred HHHcCCCCCCCCceEeecccCC
Q 037717 155 EIVIEPSLESYSVLIVDEAQER 176 (582)
Q Consensus 155 ~l~~~~~l~~~~~vViDE~HeR 176 (582)
.+...+...++.+|||||+|.-
T Consensus 111 ~~~~~p~~~~~kVvIIDEa~~L 132 (585)
T PRK14950 111 RVQFRPALARYKVYIIDEVHML 132 (585)
T ss_pred HHhhCcccCCeEEEEEeChHhC
Confidence 3444566788999999999943
No 286
>PRK10436 hypothetical protein; Provisional
Probab=95.44 E-value=0.063 Score=58.29 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCChHHHHHHHH-HH-hCCCeEEEECCCCCchhchH
Q 037717 64 LPIYPFWEELLQ-AV-SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 64 lPi~~~~~~il~-~i-~~~~~viv~a~TGSGKTt~i 97 (582)
|-..+.+.+.+. .+ ..+..++|+|||||||||.+
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 334444444444 33 35668999999999999876
No 287
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.42 E-value=0.037 Score=61.47 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=18.1
Q ss_pred HHHHHhCC---CeEEEECCCCCchhchH
Q 037717 73 LLQAVSGY---PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~~~---~~viv~a~TGSGKTt~i 97 (582)
+..++..+ +..+++||.|+||||.+
T Consensus 28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 28 LVNAILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 34455443 45789999999999665
No 288
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.40 E-value=0.023 Score=59.18 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.7
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+.+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999654
No 289
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.36 E-value=0.1 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=18.7
Q ss_pred HHHHHHcCCCCCCCCceEeecccCC
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQER 176 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR 176 (582)
+...+...|...+..+|||||+|.-
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~l 129 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHML 129 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhhc
Confidence 4555555666788999999999843
No 290
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.35 E-value=0.045 Score=60.89 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=52.1
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc--
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-- 158 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-- 158 (582)
+.++|.|++|+|||.++ ..++..+... ..+.+++|.|...+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL------------~AIa~~a~~~-------------------~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 315 NPLFIYGESGLGKTHLL------------HAIGHYARRL-------------------YPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred CcEEEECCCCCCHHHHH------------HHHHHHHHHh-------------------CCCCeEEEeeHHHHHHHHHHHH
Confidence 45899999999999554 2233332221 11245677777666544421
Q ss_pred --CC------CCCCCCceEeecccCCCc---chhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 159 --EP------SLESYSVLIVDEAQERTL---STDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 159 --~~------~l~~~~~vViDE~HeR~~---~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
+. .+.++++||||++|.-.. ..+.++.++..+... +.++|+ |+..
T Consensus 364 ~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~III-TSd~ 419 (617)
T PRK14086 364 RDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVL-SSDR 419 (617)
T ss_pred HhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEE-ecCC
Confidence 11 156789999999993221 124455666655432 334554 4444
No 291
>PLN03025 replication factor C subunit; Provisional
Probab=95.29 E-value=0.097 Score=54.25 Aligned_cols=17 Identities=53% Similarity=0.856 Sum_probs=14.7
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.++++.||+|+|||+.+
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999665
No 292
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.1 Score=55.05 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=31.3
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
+.+.+...+....+.++||||+|.. +....-.++|.+-.-.+...+|++|...
T Consensus 129 l~~~~~~~~~~~~~kVviIDead~m--~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 129 LISFFGLTAAEGGWRVVIVDTADEM--NANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred HHHHhCcCcccCCCEEEEEechHhc--CHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 3444444445678899999999933 4455555666554333345566655444
No 293
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=95.28 E-value=0.038 Score=55.83 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=62.8
Q ss_pred CCeEEEECCCCCchhchHhhhhcc-----chHH--------HHHHHHHHHHHHhCCccCcEEe-EEEeecccCCCCccEE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE-----PRWV--------AAMSVAARVSQEMGVKLGHEVG-YSIRFEDCTSDKTVLK 145 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~-----P~r~--------~a~~~a~~va~~~~~~~g~~vg-y~v~~~~~~~~~t~I~ 145 (582)
..-.++-=.||.||--++..+|++ .+|. +-.. |+|=-...|..--.... ......+...-+..|+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D-a~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD-AERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH-HHHHHHHhCCCcccceechhhccCcCCCCCCCcc
Confidence 344566667999999888887776 2111 1111 22211222221000000 0011111122345699
Q ss_pred EEChHHHHHHHHcCC---C-CC--------C-CCceEeecccCC-Ccch------hHHHHHHHHHHhhCCCceEEEeccc
Q 037717 146 YMTDCMLLREIVIEP---S-LE--------S-YSVLIVDEAQER-TLST------DNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~---~-l~--------~-~~~vViDE~HeR-~~~~------d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
|+|.-.|...-.... . |. + =.+||+||+|.- +... ..-.. ...+.+.-|+.|+|.+|||
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~a-vl~LQ~~LP~ARvvY~SAT 219 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIA-VLELQNRLPNARVVYASAT 219 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHH-HHHHHHhCCCCcEEEeccc
Confidence 999888776643211 0 11 1 268999999921 1111 11111 1223334589999999999
Q ss_pred C
Q 037717 206 L 206 (582)
Q Consensus 206 ~ 206 (582)
-
T Consensus 220 g 220 (303)
T PF13872_consen 220 G 220 (303)
T ss_pred c
Confidence 8
No 294
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=95.27 E-value=0.15 Score=57.09 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=88.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC--cEEEEeCCCCccccccC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA--RKVVLATNIAETSLTID 335 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~--~kVivaT~iae~gidIp 335 (582)
.+.+||+|-.=..-.+.+...|.. .++..+-+.|+.+-.+|+.++..|...+ .-.+++|-...-|||+-
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~---------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT---------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh---------cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 357899997655555555555544 4678889999999999999999986543 35689999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
....|| .-...|||.. --++.-|+-|.|.+.|=..|||.++...+.
T Consensus 847 ~An~VI----ihD~dFNP~d-----------D~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 847 CANTVI----IHDIDFNPYD-----------DKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccceEE----EeecCCCCcc-----------cchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 999999 2222344433 335788999999999999999999987654
No 295
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.029 Score=58.33 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCCCceEeecccCCC-cchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 163 ESYSVLIVDEAQERT-LSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 163 ~~~~~vViDE~HeR~-~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.+=.+++|||+|... ...|++|-.+. +-.+++..||-
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lLp~vE-------~G~iilIGATT 140 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALLPHVE-------NGTIILIGATT 140 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhhhhhc-------CCeEEEEeccC
Confidence 345789999999332 34566666553 45788888987
No 296
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.22 E-value=0.068 Score=56.65 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=52.2
Q ss_pred HHHhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHH
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLR 154 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~ 154 (582)
..++.+.+++..||+|+|||... .++....+-..| -+.|...|..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla------------~~l~~~~a~~sG-----------------------~f~T~a~Lf~ 248 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIY------------NNLSPYVILISG-----------------------GTITVAKLFY 248 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHH------------HHHhHHHHHHcC-----------------------CcCcHHHHHH
Confidence 45678999999999999999543 122121111111 2556666666
Q ss_pred HHHcCCC--CCCCCceEeecccCCCcc-hhHHHHHHHHHHh
Q 037717 155 EIVIEPS--LESYSVLIVDEAQERTLS-TDNLFGLLKDLIN 192 (582)
Q Consensus 155 ~l~~~~~--l~~~~~vViDE~HeR~~~-~d~ll~~lk~~~~ 192 (582)
.+..... +..+++||+||+--.... .+-..+.+|.-+.
T Consensus 249 ~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMe 289 (449)
T TIGR02688 249 NISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYME 289 (449)
T ss_pred HHHHHHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHH
Confidence 6654332 889999999999842222 2335677777654
No 297
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.20 E-value=0.027 Score=62.98 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=23.0
Q ss_pred CCChHHHHHHH-HHHh-CCCeEEEECCCCCchhchH
Q 037717 64 LPIYPFWEELL-QAVS-GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 64 lPi~~~~~~il-~~i~-~~~~viv~a~TGSGKTt~i 97 (582)
|-+.+.+.+.+ +.+. .+..++++|||||||||.+
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 34444444444 4444 4568899999999999876
No 298
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.18 E-value=0.019 Score=55.88 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhCCCe-EEEECCCCCchhchHhh
Q 037717 67 YPFWEELLQAVSGYPV-LAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 67 ~~~~~~il~~i~~~~~-viv~a~TGSGKTt~ip~ 99 (582)
.+.|.+++..+..+.. .+|.||+|+|||+.+..
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH
Confidence 4678888888888886 99999999999976633
No 299
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.18 E-value=0.067 Score=50.31 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=59.8
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhcc--c---------hHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCc---
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYE--P---------RWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT--- 142 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~--P---------~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t--- 142 (582)
+..++.+.+.|+.||||||++-.+.-. | ..+... ..... ..+||..... ...+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~--------~~i~~~~q~~-~~~~~tv~~ 93 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALS--------SLISVLNQRP-YLFDTTLRN 93 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHHHH--------hhEEEEccCC-eeecccHHH
Confidence 457899999999999999887554322 1 111100 01111 1234422100 000000
Q ss_pred c-EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHH
Q 037717 143 V-LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 143 ~-I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~ 211 (582)
. ..-.+.|...+.......+.+-+++++||.= .+++.+....+++.+.+.....-+|+.| -+.+.+
T Consensus 94 ~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s--h~~~~~ 160 (178)
T cd03247 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT--HHLTGI 160 (178)
T ss_pred hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe--cCHHHH
Confidence 0 2234556655555545556777999999996 5666544333333332222233444433 344444
No 300
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.17 E-value=0.037 Score=59.00 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+++
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 456999999999999554
No 301
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.12 E-value=0.084 Score=57.84 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHH-Hh-CCCeEEEECCCCCchhchHh
Q 037717 64 LPIYPFWEELLQA-VS-GYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 64 lPi~~~~~~il~~-i~-~~~~viv~a~TGSGKTt~ip 98 (582)
|.+.+.+.+.+.. +. .+..++|+|||||||||.+-
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4445555545444 33 34578999999999998773
No 302
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.052 Score=61.24 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=17.7
Q ss_pred HHHHHhCC---CeEEEECCCCCchhchH
Q 037717 73 LLQAVSGY---PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~~~---~~viv~a~TGSGKTt~i 97 (582)
+..++..+ ..+++.||.|+|||+.+
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSA 55 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHH
Confidence 33444444 45699999999999665
No 303
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.08 E-value=0.091 Score=56.02 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHHHcCCCc
Q 037717 428 DPPLEEALLKAFELLYALGALN 449 (582)
Q Consensus 428 ~~p~~~~i~~al~~L~~lgal~ 449 (582)
+|.....+...+..|...|.|.
T Consensus 335 ~~~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 335 EPRTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred CcCcHHHHHHHHHHHHhcCCeE
Confidence 3556788889999999999986
No 304
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.06 E-value=0.018 Score=55.43 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
-|....|..+++++.+++.+++.||.|||||+++
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHH
Confidence 4778899999999999999999999999999654
No 305
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.05 E-value=0.095 Score=52.73 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
...+.+..||.|+|||..+
T Consensus 56 ~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred CCceEEeeCCCCCcHhHHH
Confidence 4578999999999999655
No 306
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.05 E-value=0.024 Score=58.14 Aligned_cols=29 Identities=41% Similarity=0.465 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCeEEEECCCCCchhchHhh
Q 037717 71 EELLQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 71 ~~il~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.-+..+++.+.+++|+|+|||||||.+-.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~a 151 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANA 151 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHH
Confidence 34556778888999999999999988743
No 307
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.01 E-value=0.14 Score=46.00 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.2
Q ss_pred EEEECCCCCchhchH
Q 037717 83 LAIVGETGSGKTTQI 97 (582)
Q Consensus 83 viv~a~TGSGKTt~i 97 (582)
++|+|||||||||++
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999765
No 308
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.99 E-value=0.048 Score=52.97 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=21.9
Q ss_pred HHHHHHhC--CCeEEEECCCCCchhchHhhhh
Q 037717 72 ELLQAVSG--YPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 72 ~il~~i~~--~~~viv~a~TGSGKTt~ip~~l 101 (582)
++.+.+.. ++.++|.||.|+|||+++-.++
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~ 41 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFI 41 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHH
Confidence 34444444 5889999999999998765543
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.99 E-value=0.08 Score=49.89 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCcc------CcEEeEEEeecccCCCCccEEEECh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKL------GHEVGYSIRFEDCTSDKTVLKYMTD 149 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~------g~~vgy~v~~~~~~~~~t~I~~~T~ 149 (582)
.+..+..+.+.||.||||||++-.+ +......- |..+||... ... .+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l----------------~Gl~~p~~G~i~~~g~~i~~~~q-------~~~---LSg 74 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKIL----------------AGQLIPNGDNDEWDGITPVYKPQ-------YID---LSG 74 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHH----------------HcCCCCCCcEEEECCEEEEEEcc-------cCC---CCH
Confidence 4578999999999999999887332 11111011 122333211 000 555
Q ss_pred HHHHHHHHcCCCCCCCCceEeecccCCCcchhH
Q 037717 150 CMLLREIVIEPSLESYSVLIVDEAQERTLSTDN 182 (582)
Q Consensus 150 g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ 182 (582)
|+-.+.......+.+-+++++||-- .+++...
T Consensus 75 Gq~qrv~laral~~~p~lllLDEPt-s~LD~~~ 106 (177)
T cd03222 75 GELQRVAIAAALLRNATFYLFDEPS-AYLDIEQ 106 (177)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHH
Confidence 6555444444445666999999996 5666444
No 310
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.09 Score=49.45 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=52.6
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhcc--chH--HH--HHHHHHH--HHHHhCCccCcEEeEEEeecccCCC---CccEE
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYE--PRW--VA--AMSVAAR--VSQEMGVKLGHEVGYSIRFEDCTSD---KTVLK 145 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~--P~r--~~--a~~~a~~--va~~~~~~~g~~vgy~v~~~~~~~~---~t~I~ 145 (582)
+..++.+.+.||.||||||++-.+.-. |.. +. -..+... -... ....++|.......... .-.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhee
Confidence 457899999999999999887554321 110 00 0000000 0000 01124443211111000 11233
Q ss_pred E-EChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHH
Q 037717 146 Y-MTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLF 184 (582)
Q Consensus 146 ~-~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll 184 (582)
+ .+.|+..+.......+.+-.++|+||-- .+++.+...
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~ 137 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRR 137 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHH
Confidence 3 6777766655555556777999999997 666655433
No 311
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.98 E-value=0.044 Score=60.83 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHh------CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccC
Q 037717 65 PIYPFWEELLQAVS------GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT 138 (582)
Q Consensus 65 Pi~~~~~~il~~i~------~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~ 138 (582)
+-..+..+.+++.. ..+++++|||.|-||||++ .-+|.. .||.|-.-+..
T Consensus 305 s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA----------------HViAkq--------aGYsVvEINAS 360 (877)
T KOG1969|consen 305 SKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA----------------HVIAKQ--------AGYSVVEINAS 360 (877)
T ss_pred ccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH----------------HHHHHh--------cCceEEEeccc
Confidence 44445556666554 3578999999999999775 223332 46765432232
Q ss_pred CCCccEEEEChHHHHHHHHcCCCC---CCCCceEeecccCCCcc---hhHHHHHHH
Q 037717 139 SDKTVLKYMTDCMLLREIVIEPSL---ESYSVLIVDEAQERTLS---TDNLFGLLK 188 (582)
Q Consensus 139 ~~~t~I~~~T~g~Ll~~l~~~~~l---~~~~~vViDE~HeR~~~---~d~ll~~lk 188 (582)
.+.+-= +--..+.........+ ++-.|+||||++ |.. .|.++.+++
T Consensus 361 DeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEID--Ga~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 361 DERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEID--GAPRAAVDVILSLVK 412 (877)
T ss_pred ccccHH--HHHHHHHHHHhhccccccCCCcceEEEeccc--CCcHHHHHHHHHHHH
Confidence 222110 0123344444445556 678999999998 333 566777666
No 312
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.96 E-value=0.017 Score=58.34 Aligned_cols=25 Identities=48% Similarity=0.583 Sum_probs=20.8
Q ss_pred HHHhCCCeEEEECCCCCchhchHhh
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+++.+.+++++|+|||||||++-.
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~a 146 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLNA 146 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHHH
T ss_pred hccccceEEEEECCCccccchHHHH
Confidence 4456789999999999999988743
No 313
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.94 E-value=0.019 Score=43.83 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=17.4
Q ss_pred CCeEEEECCCCCchhchHhhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ 100 (582)
+++++|+|++||||||++-.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 458999999999999887543
No 314
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.14 Score=54.30 Aligned_cols=93 Identities=20% Similarity=0.321 Sum_probs=57.3
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
.+.+++.|++|+|||.++ +.++.+.. ...++.+++|+|.+.+.+.+...
T Consensus 113 ~nplfi~G~~GlGKTHLl----------------~Aign~~~---------------~~~~~a~v~y~~se~f~~~~v~a 161 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLL----------------QAIGNEAL---------------ANGPNARVVYLTSEDFTNDFVKA 161 (408)
T ss_pred CCcEEEECCCCCCHHHHH----------------HHHHHHHH---------------hhCCCceEEeccHHHHHHHHHHH
Confidence 567999999999999554 11111111 12345789999998776544322
Q ss_pred ----------CCCCCCCceEeecccCCCcc---hhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 160 ----------PSLESYSVLIVDEAQERTLS---TDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 160 ----------~~l~~~~~vViDE~HeR~~~---~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
... ++++++||.++-..-. .+.++..+..+....+ ++|+.|...
T Consensus 162 ~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~ 218 (408)
T COG0593 162 LRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRP 218 (408)
T ss_pred HHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCC
Confidence 114 7999999999932222 4556666666554332 666666443
No 315
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.93 E-value=0.069 Score=57.45 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.2
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.||+|+||||++
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6889999999999765
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.077 Score=49.54 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.4
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.||.||||||++-.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i 48 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLL 48 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999887544
No 317
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.90 E-value=0.027 Score=58.11 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.1
Q ss_pred HHHHHHhCCCeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
-+..++..+.+++|+|+|||||||.+
T Consensus 136 ~L~~~v~~~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 136 VIRSAIDSRLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 34567788889999999999999887
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.12 Score=48.00 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=59.8
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeE---EEeeccc-CCCCccEEE---ECh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGY---SIRFEDC-TSDKTVLKY---MTD 149 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy---~v~~~~~-~~~~t~I~~---~T~ 149 (582)
+..++.+.+.|+.||||||++-.+.-. ....-| .+-+ .+...+. ......+-| .+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~----------------~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~ 85 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL----------------YKPDSG-EILVDGKEVSFASPRDARRAGIAMVYQLSV 85 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC----------------CCCCCe-EEEECCEECCcCCHHHHHhcCeEEEEecCH
Confidence 568899999999999999887443211 000001 1100 0000000 000112333 566
Q ss_pred HHHHHHHHcCCCCCCCCceEeecccCCCcchhHH---HHHHHHHHhhCCCceEEEecccCChHHHHhhh
Q 037717 150 CMLLREIVIEPSLESYSVLIVDEAQERTLSTDNL---FGLLKDLINYRPDLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 150 g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~l---l~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f 215 (582)
|+..+.......+.+-+++++||.= .+++.+.. ...++.+.+ ...-+|+.| =+.+.+.++.
T Consensus 86 G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~--~~~tiii~s--h~~~~~~~~~ 149 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRA--QGVAVIFIS--HRLDEVFEIA 149 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHH--CCCEEEEEe--CCHHHHHHhC
Confidence 7666555544456667999999996 66665543 334443321 233444433 3445555544
No 319
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.89 E-value=0.1 Score=48.71 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=17.1
Q ss_pred CCCCceEeecccCCCcchhHHHHHHHHHHh
Q 037717 163 ESYSVLIVDEAQERTLSTDNLFGLLKDLIN 192 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~~~d~ll~~lk~~~~ 192 (582)
.+-+++||||+=-.-+...-....+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 467899999998554555555566666655
No 320
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.071 Score=55.01 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=25.0
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEec
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISS 203 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~S 203 (582)
.+....+.+||||||+.- ..|..=.++|.+....++..+|+.+
T Consensus 104 ~~~~~~~kviiidead~m--t~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 104 SPLEGGYKVVIIDEADKL--TEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCCCCceEEEeCcHHHH--hHHHHHHHHHHhccCCCCeEEEEEc
Confidence 334578999999999833 3344444444443333445555543
No 321
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.78 E-value=0.093 Score=48.65 Aligned_cols=50 Identities=26% Similarity=0.386 Sum_probs=29.5
Q ss_pred HHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 155 EIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 155 ~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.+...+.-..+.++||||||. +..+..=++||.+-.-..+..+|++|-..
T Consensus 93 ~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 93 FLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 333344466899999999993 34445555566544433467777766544
No 322
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.78 E-value=0.034 Score=52.81 Aligned_cols=26 Identities=42% Similarity=0.465 Sum_probs=21.7
Q ss_pred HHHHhCCCeEEEECCCCCchhchHhh
Q 037717 74 LQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 74 l~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
-..+..+.+++++|||||||||++-.
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 35577899999999999999988733
No 323
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.026 Score=58.33 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhC-CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEE
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSG-YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSI 132 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~-~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v 132 (582)
.+++++.---||++- .+....++. =+-+++.||+|+|||.+ |+.||.|.+..+ +.|
T Consensus 220 AK~lL~EAVvlPi~m--Pe~F~GirrPWkgvLm~GPPGTGKTlL----------------AKAvATEc~tTF-----FNV 276 (491)
T KOG0738|consen 220 AKKLLKEAVVLPIWM--PEFFKGIRRPWKGVLMVGPPGTGKTLL----------------AKAVATECGTTF-----FNV 276 (491)
T ss_pred HHHHHHHHHhhhhhh--HHHHhhcccccceeeeeCCCCCcHHHH----------------HHHHHHhhcCeE-----EEe
Confidence 344444445566642 122333322 24589999999999943 366777776432 112
Q ss_pred eecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeeccc----CCCcchh
Q 037717 133 RFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQ----ERTLSTD 181 (582)
Q Consensus 133 ~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H----eR~~~~d 181 (582)
.-...++ =+=+-.+.|+|.|..-.-+-.-+.|.|||++ .||-..+
T Consensus 277 SsstltS----KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E 325 (491)
T KOG0738|consen 277 SSSTLTS----KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE 325 (491)
T ss_pred chhhhhh----hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc
Confidence 1111110 1112245677766543334556999999999 5665544
No 324
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.76 E-value=0.031 Score=58.34 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=22.8
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHhhh
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+-.+++.+.+++|+|+|||||||.+-.+
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aL 182 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTL 182 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHH
Confidence 3356778899999999999999887443
No 325
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.75 E-value=0.043 Score=56.47 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred HHHHHHhCCCeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
.++..+..++.+++.|++|+|||+.+
T Consensus 56 ~vl~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 56 AICAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHH
Confidence 47777888889999999999999665
No 326
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.75 E-value=0.075 Score=61.58 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHh--------CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEE-Eeecc
Q 037717 66 IYPFWEELLQAVS--------GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYS-IRFED 136 (582)
Q Consensus 66 i~~~~~~il~~i~--------~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~-v~~~~ 136 (582)
....++.|++.+. .+..+++.||+|+|||+.+ +.++..++.... .+..+ ++...
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~----------------~~ia~~l~~~~~-~i~~~~~~d~~ 389 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG----------------QSIAKATGRKYV-RMALGGVRDEA 389 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH----------------HHHHHHhCCCEE-EEEcCCCCCHH
Confidence 3444566665443 3568999999999999554 455555554421 11111 01000
Q ss_pred cCCCCccEEE--EChHHHHHHHHcCCCCCCCCceEeecccC
Q 037717 137 CTSDKTVLKY--MTDCMLLREIVIEPSLESYSVLIVDEAQE 175 (582)
Q Consensus 137 ~~~~~t~I~~--~T~g~Ll~~l~~~~~l~~~~~vViDE~He 175 (582)
.. .+.+-.| ..+|.+.+.+...... -.++++||+|.
T Consensus 390 ~i-~g~~~~~~g~~~G~~~~~l~~~~~~--~~villDEidk 427 (784)
T PRK10787 390 EI-RGHRRTYIGSMPGKLIQKMAKVGVK--NPLFLLDEIDK 427 (784)
T ss_pred Hh-ccchhccCCCCCcHHHHHHHhcCCC--CCEEEEEChhh
Confidence 01 1122223 2578888777543322 24899999993
No 327
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.08 Score=59.52 Aligned_cols=29 Identities=3% Similarity=0.037 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCCcc
Q 037717 548 NYIQVSSMKRARDIRDQLEGLFARVEIDT 576 (582)
Q Consensus 548 ~~l~~~~l~~~~~~~~ql~~~l~~~~~~~ 576 (582)
|-+++.-|..-.++-..++.-+.+..|.+
T Consensus 548 ~~~~~e~l~~~~~~l~~~~~~~~~~~~~~ 576 (620)
T PRK14954 548 RKFSYEELMQDAALLSKEIESFYGIPLKL 576 (620)
T ss_pred ccccHHHHHhHHHHHHHHHHHHhcCCceE
Confidence 34567777777788888888887776654
No 328
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.67 E-value=0.11 Score=61.16 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=88.8
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC--CcEEEEeCCCCccccccCCee
Q 037717 261 DILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER--ARKVVLATNIAETSLTIDGIK 338 (582)
Q Consensus 261 ~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g--~~kVivaT~iae~gidIp~v~ 338 (582)
++|+|.+-....+.+...+... ++..+.++|+++.+.|+..++.|.++ ..-.+++|-.+..|+|.-...
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999988888888887762 35688899999999999999999875 556778888999999999999
Q ss_pred EEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 339 YVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 339 ~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
.|| .||+..+ |.-..++..|+-|.|+..+=..|++.++...+.
T Consensus 784 ~vi--------~~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVI--------LFDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEE--------EeccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 999 6665433 222335566777777777888999999987654
No 329
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.12 Score=53.73 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=28.5
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCC-CceEEEec
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP-DLKLLISS 203 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~-~~kii~~S 203 (582)
+...+...+.....+++||||+|.. +.+..=++||.+ ...| +..+|+.|
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m--~~~aaNaLLK~L-EEPp~~~~fiL~t 143 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAM--NRNAANALLKSL-EEPSGDTVLLLIS 143 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhC--CHHHHHHHHHHH-hCCCCCeEEEEEE
Confidence 3444445566788999999999933 334445555543 3333 34444433
No 330
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.54 E-value=0.18 Score=50.91 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=21.4
Q ss_pred HHHHHHHh-CC--CeEEEECCCCCchhchHhhh
Q 037717 71 EELLQAVS-GY--PVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 71 ~~il~~i~-~~--~~viv~a~TGSGKTt~ip~~ 100 (582)
+.++..+. .+ +++++.|||||||||.+-.+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l 131 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDL 131 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHH
Confidence 33444443 33 58899999999999887554
No 331
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.52 E-value=0.084 Score=57.85 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.3
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
..+.+++.||+|||||+.+
T Consensus 215 ~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCcceEEECCCCCcHHHHH
Confidence 3456999999999999543
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.50 E-value=0.19 Score=46.80 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=24.0
Q ss_pred CCCCceEeecccCCCcchhHHHHHHHHHHhh-CCCceEEEecccC
Q 037717 163 ESYSVLIVDEAQERTLSTDNLFGLLKDLINY-RPDLKLLISSATL 206 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~-~~~~kii~~SAT~ 206 (582)
.+++++|+|...-...+. ..+..++.+... .++--++.++|..
T Consensus 81 ~~~d~viiDt~g~~~~~~-~~l~~l~~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDE-NLMEELKKIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred CCCCEEEEECcccchhhH-HHHHHHHHHHhhcCCCeEEEEEECCC
Confidence 467899999988333322 233444443332 3555666666654
No 333
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=94.50 E-value=0.041 Score=56.14 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.8
Q ss_pred cCCCChHHHHH----HHHHHhCCCeEEEECCCCCchhch
Q 037717 62 KTLPIYPFWEE----LLQAVSGYPVLAIVGETGSGKTTQ 96 (582)
Q Consensus 62 ~~lPi~~~~~~----il~~i~~~~~viv~a~TGSGKTt~ 96 (582)
.+++.++.|.+ +.+++.+++.+++.+|||+|||..
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~ 43 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLS 43 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHH
Confidence 34445888887 666678899999999999999943
No 334
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=94.50 E-value=0.041 Score=56.14 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.8
Q ss_pred cCCCChHHHHH----HHHHHhCCCeEEEECCCCCchhch
Q 037717 62 KTLPIYPFWEE----LLQAVSGYPVLAIVGETGSGKTTQ 96 (582)
Q Consensus 62 ~~lPi~~~~~~----il~~i~~~~~viv~a~TGSGKTt~ 96 (582)
.+++.++.|.+ +.+++.+++.+++.+|||+|||..
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~ 43 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLS 43 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHH
Confidence 34445888887 666678899999999999999943
No 335
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.49 E-value=0.05 Score=55.85 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=14.5
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+.+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999654
No 336
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.48 E-value=0.067 Score=57.62 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.||+|+|||+.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999554
No 337
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.47 E-value=0.48 Score=50.52 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
+.+.+...|...++.++||||+|.-+. ...-.++|.+ ...|+-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~m~~--~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADRLTE--RAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhhcCH--HHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 344444456677889999999994332 2333344433 33333344444444
No 338
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.45 E-value=0.038 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHhCCCeEEEECCCCCchhchHhh
Q 037717 74 LQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 74 l~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+++.+.+++|+|+|||||||.+-.
T Consensus 154 ~~~v~~~~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 154 EHAVISKKNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHHHH
Confidence 34567889999999999999988844
No 339
>CHL00176 ftsH cell division protein; Validated
Probab=94.45 E-value=0.06 Score=60.80 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.5
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999654
No 340
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.33 E-value=0.13 Score=48.06 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=20.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.||.||||||++-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l 48 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLI 48 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999877544
No 341
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.32 E-value=0.19 Score=56.14 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=22.6
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
+.......|....+.++||||+|.- ..+..-.++|.
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~L--t~~a~naLLKt 142 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHML--STGAFNALLKT 142 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECcccC--CHHHHHHHHHH
Confidence 3344444566788999999999943 33334444554
No 342
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.099 Score=54.85 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.1
Q ss_pred CCeEEEECCCCCchhch
Q 037717 80 YPVLAIVGETGSGKTTQ 96 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ 96 (582)
..++++.||||||||.+
T Consensus 226 KSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLL 242 (564)
T ss_pred cccEEEECCCCCchhHH
Confidence 34789999999999943
No 343
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.27 E-value=0.12 Score=60.06 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=15.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.++++.||+|+|||+.+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999554
No 344
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.24 E-value=0.029 Score=56.17 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....++|+|||||||||.+
T Consensus 124 ~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCceEEEeCCCCCcHHHHH
Confidence 4557899999999999776
No 345
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.19 E-value=0.14 Score=57.04 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHcCCCCCCCCceEeecccCC
Q 037717 156 IVIEPSLESYSVLIVDEAQER 176 (582)
Q Consensus 156 l~~~~~l~~~~~vViDE~HeR 176 (582)
+...|...++.++||||+|.-
T Consensus 111 ~~~~p~~~~~KVvIIDEa~~L 131 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVHML 131 (563)
T ss_pred HHhchhcCCCEEEEEEChhhc
Confidence 345566789999999999944
No 346
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.17 E-value=0.043 Score=57.66 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=20.1
Q ss_pred HHHHHh-CCCeEEEECCCCCchhchH
Q 037717 73 LLQAVS-GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~-~~~~viv~a~TGSGKTt~i 97 (582)
+.+.+. .+..++|+|||||||||.+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 444444 6789999999999999876
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.048 Score=52.68 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecccCChHHHHhhhC
Q 037717 164 SYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSATLDAEKFSDYFG 216 (582)
Q Consensus 164 ~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SAT~~~~~~~~~f~ 216 (582)
+-++.|+||.+ -|++.|.+-.+-+.+-..+ ++.-+++.+ -.+.+.+|..
T Consensus 162 ePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT---Hy~rll~~i~ 211 (251)
T COG0396 162 EPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT---HYQRLLDYIK 211 (251)
T ss_pred CCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe---cHHHHHhhcC
Confidence 34899999999 7889888766555544333 333333332 3455666654
No 348
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.08 E-value=0.1 Score=55.85 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.1
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..++++.||||||||+.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999654
No 349
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.17 Score=46.29 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=14.2
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
-+.|+|++|+||||.+
T Consensus 7 ki~ITG~PGvGKtTl~ 22 (179)
T COG1618 7 KIFITGRPGVGKTTLV 22 (179)
T ss_pred EEEEeCCCCccHHHHH
Confidence 4789999999999876
No 350
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.07 E-value=0.035 Score=52.07 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=47.8
Q ss_pred EEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec-------ccCCCCcc
Q 037717 84 AIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE-------DCTSDKTV 143 (582)
Q Consensus 84 iv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~-------~~~~~~t~ 143 (582)
||+|+-|-|||+.+-..+.. |....+..+.+.....+. ..||...-. .....+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 57999999999877665433 887777766554433221 122221100 01123568
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
|.|..|..+... -...+++|||||= .+. +.+|+.++. ....++||.|+
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp----~p~L~~ll~---~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIP----LPLLKQLLR---RFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-----HHHHHHHHC---CSSEEEEEEEB
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCC----HHHHHHHHh---hCCEEEEEeec
Confidence 889888876532 2245999999995 333 334455543 23456778887
No 351
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.17 Score=56.47 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHh--------CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCc-EEeEEEeecc
Q 037717 66 IYPFWEELLQAVS--------GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGH-EVGYSIRFED 136 (582)
Q Consensus 66 i~~~~~~il~~i~--------~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~-~vgy~v~~~~ 136 (582)
+...++.|++.+. .+..+.++||+|.||| |+++.+|+.++..... .+| ++|.+.
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKT----------------SLgkSIA~al~RkfvR~sLG-GvrDEA 390 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKT----------------SLGKSIAKALGRKFVRISLG-GVRDEA 390 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCch----------------hHHHHHHHHhCCCEEEEecC-ccccHH
Confidence 5666888888773 5689999999999999 4445555556544311 111 233333
Q ss_pred cCCCCccEEE--EChHHHHHHHHcCCCCCCCCceEeeccc
Q 037717 137 CTSDKTVLKY--MTDCMLLREIVIEPSLESYSVLIVDEAQ 174 (582)
Q Consensus 137 ~~~~~t~I~~--~T~g~Ll~~l~~~~~l~~~~~vViDE~H 174 (582)
..... +=+| +-||.+.+-|..-.... -++++||++
T Consensus 391 EIRGH-RRTYIGamPGrIiQ~mkka~~~N--Pv~LLDEID 427 (782)
T COG0466 391 EIRGH-RRTYIGAMPGKIIQGMKKAGVKN--PVFLLDEID 427 (782)
T ss_pred Hhccc-cccccccCChHHHHHHHHhCCcC--CeEEeechh
Confidence 32222 2223 45999999886433222 479999999
No 352
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.26 Score=55.68 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=18.2
Q ss_pred HHHHcCCCCCCCCceEeecccCCC
Q 037717 154 REIVIEPSLESYSVLIVDEAQERT 177 (582)
Q Consensus 154 ~~l~~~~~l~~~~~vViDE~HeR~ 177 (582)
..+...|...++.++||||+|.-+
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls 134 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLS 134 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCC
Confidence 344556778899999999999543
No 353
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.03 E-value=0.086 Score=59.81 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHhCC-CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHH
Q 037717 65 PIYPFWEELLQAVSGY-PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQE 119 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~-~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~ 119 (582)
++...|.+++.....+ ++++|.||+|+|||+.+-.++.. |+..++..+..++...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 3567777777776655 89999999999999766554332 8999999998888763
No 354
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.94 E-value=0.03 Score=53.62 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.2
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 568999999999999999887
No 355
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.12 Score=53.28 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=65.7
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHH
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREI 156 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l 156 (582)
+...+.+++-||+|+|||.+ |+.+|++.|...+..-++.+ +.=+|+-.+-|.+.+
T Consensus 124 l~p~kGiLL~GPpG~GKTml----------------AKA~Akeaga~fInv~~s~l---------t~KWfgE~eKlv~Av 178 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTML----------------AKAIAKEAGANFINVSVSNL---------TSKWFGEAQKLVKAV 178 (386)
T ss_pred ccCCccceecCCCCchHHHH----------------HHHHHHHcCCCcceeecccc---------chhhHHHHHHHHHHH
Confidence 34567799999999999933 47778887766543222222 223555566677766
Q ss_pred HcCCCCCCCCceEeeccc----CCCcchhHHHHHHHHH-H------hhCCCceEEEecccCChHHH
Q 037717 157 VIEPSLESYSVLIVDEAQ----ERTLSTDNLFGLLKDL-I------NYRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 157 ~~~~~l~~~~~vViDE~H----eR~~~~d~ll~~lk~~-~------~~~~~~kii~~SAT~~~~~~ 211 (582)
.+-+.--.-+.|.|||++ .|...-.-....+|.- + ....+.+|++|-||=-+.++
T Consensus 179 FslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 179 FSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 554443344789999998 4432222233333322 1 23345689999999744333
No 356
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.90 E-value=0.13 Score=59.04 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=14.8
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..+++.||+|+||||.+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999765
No 357
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.88 E-value=0.071 Score=52.22 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=14.6
Q ss_pred EEEECCCCCchhchHhhh
Q 037717 83 LAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 83 viv~a~TGSGKTt~ip~~ 100 (582)
++|.|+.||||||.+-..
T Consensus 1 ~vv~G~pGsGKSt~i~~~ 18 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKL 18 (234)
T ss_pred CEEEcCCCCCHHHHHHHH
Confidence 478999999999877443
No 358
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.85 E-value=0.18 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=18.6
Q ss_pred HHHHHHhCC---CeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGY---PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~---~~viv~a~TGSGKTt~i 97 (582)
.+..++..+ +..++.||+|+|||+.+
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 344455554 35789999999999665
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.1 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.2
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|.|+.||||||++-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999877544
No 360
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=93.80 E-value=0.1 Score=55.23 Aligned_cols=53 Identities=9% Similarity=0.170 Sum_probs=39.6
Q ss_pred CCCceEeecccCCCcchhHHHHHHHHHHh---hCCCceEEEecccC-ChHHHHhhhC
Q 037717 164 SYSVLIVDEAQERTLSTDNLFGLLKDLIN---YRPDLKLLISSATL-DAEKFSDYFG 216 (582)
Q Consensus 164 ~~~~vViDE~HeR~~~~d~ll~~lk~~~~---~~~~~kii~~SAT~-~~~~~~~~f~ 216 (582)
..-+||||-+..+.-..+++...+-++.. ...-..||++|... ..+.+++.+.
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLP 204 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALP 204 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCC
Confidence 35789999998777667787777776643 34557899999888 6677888773
No 361
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=93.77 E-value=0.076 Score=54.30 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh---hc-c------------chHHHHHHHHHHHHHHhC
Q 037717 67 YPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY---LY-E------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 67 ~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~---ll-~------------P~r~~a~~~a~~va~~~~ 121 (582)
.+-|.+++.. .++.++|.|..|||||+.+-.- ++ . +++.+|..+..|+...++
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 3567777776 5677888999999999766432 21 1 778888888888877543
No 362
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.75 E-value=0.21 Score=47.14 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=54.3
Q ss_pred eEEEECCCCCchhchHhhhhcc----chHHHHHHHHHHH--HHHhCCccCcEEeE-EEeeccc-----CCCCccEEEECh
Q 037717 82 VLAIVGETGSGKTTQIPQYLYE----PRWVAAMSVAARV--SQEMGVKLGHEVGY-SIRFEDC-----TSDKTVLKYMTD 149 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ll~----P~r~~a~~~a~~v--a~~~~~~~g~~vgy-~v~~~~~-----~~~~t~I~~~T~ 149 (582)
..+++||+|||||+.+-.+.+- +.+.... ..+ .... ...|...++ .+.++.. ..+.+.| .+.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~v~~~f~~~~~~~~~~~~~~~--LS~ 97 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRG---SLLFLAGGG-VKAGINSASVEITFDKSYFLVLQGKVEQI--LSG 97 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCc---chhhhcccc-cCCCCceEEEEEEEECceEEecCCcCccc--CCH
Confidence 7889999999999776543221 1111000 000 0000 112222222 2333221 1223444 566
Q ss_pred HHHHHHHHcCCC----CCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecc
Q 037717 150 CMLLREIVIEPS----LESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSA 204 (582)
Q Consensus 150 g~Ll~~l~~~~~----l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SA 204 (582)
|+..+....... +.+.+++++||.. .+++......+.+.+.... ....+|+.|-
T Consensus 98 Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 98 GEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 654443332211 3567999999998 6666554443333332221 2355665544
No 363
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.74 E-value=0.12 Score=60.03 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.5
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
...+.+++.||+|||||+.+
T Consensus 210 ~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCceEEEECCCCCChHHHH
Confidence 34577999999999999664
No 364
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.73 E-value=0.056 Score=56.18 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=43.1
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
..+.+.||.|||||.++ +.++.+++..+- .+...+. ..=.++-++.++|.+....
T Consensus 149 lgllL~GPPGcGKTllA----------------raiA~elg~~~i-----~vsa~eL----~sk~vGEsEk~IR~~F~~A 203 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC----------------ELVFKKMGIEPI-----VMSAGEL----ESENAGEPGKLIRQRYREA 203 (413)
T ss_pred eEEEeeCCCCCCHHHHH----------------HHHHHHcCCCeE-----EEEHHHh----hcCcCCcHHHHHHHHHHHH
Confidence 45888999999999554 556777765431 1110111 1123566788888776432
Q ss_pred C-----CCCCCceEeeccc
Q 037717 161 S-----LESYSVLIVDEAQ 174 (582)
Q Consensus 161 ~-----l~~~~~vViDE~H 174 (582)
. -..-.+|+|||+|
T Consensus 204 ~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred HHHhhccCCCeEEEEehhh
Confidence 2 1346899999999
No 365
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.73 E-value=0.28 Score=56.37 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=17.5
Q ss_pred CCCCceEeecccCCCc-chhHHHHHHHH
Q 037717 163 ESYSVLIVDEAQERTL-STDNLFGLLKD 189 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~-~~d~ll~~lk~ 189 (582)
..+.+|||||+|...- ..++|+.+++.
T Consensus 868 r~v~IIILDEID~L~kK~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccHHHHHHHHHHH
Confidence 4467899999993322 34566666654
No 366
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=0.27 Score=47.59 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
++++.||+|+||||++
T Consensus 139 ntLiigpP~~GKTTlL 154 (308)
T COG3854 139 NTLIIGPPQVGKTTLL 154 (308)
T ss_pred eeEEecCCCCChHHHH
Confidence 4799999999999886
No 367
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.68 E-value=0.26 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=20.2
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.|+.||||||++-.+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i 45 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTL 45 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999877554
No 368
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.64 E-value=0.19 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHHHHHHcCCCcC
Q 037717 427 IDPPLEEALLKAFELLYALGALNK 450 (582)
Q Consensus 427 ~~~p~~~~i~~al~~L~~lgal~~ 450 (582)
.+|.....+...+..|..+|.|+.
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 346677888888888888888864
No 369
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.64 E-value=0.036 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.1
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+..+.|.||+||||||++-.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLni 50 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNL 50 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 56899999999999999998743
No 370
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.61 E-value=0.075 Score=56.69 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
..+.+++.||+|||||+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999654
No 371
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.59 E-value=0.079 Score=53.34 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=23.2
Q ss_pred ChHHHHHHH-HHHh-CCCeEEEECCCCCchhchHhh
Q 037717 66 IYPFWEELL-QAVS-GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 66 i~~~~~~il-~~i~-~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+.+.+.+ .++. .+..++|+|+|||||||.+-.
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 444444444 4444 456899999999999988743
No 372
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.56 E-value=0.21 Score=47.11 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=42.1
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc-CCCCccEEEEChHHHHHHHHc
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC-TSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~-~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
++.+|++||+|||||++. .++.++....++..+.|..|--.. ..++.+-.|.|.+-+.++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~----------------~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~ 65 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLA----------------KRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKA 65 (183)
T ss_dssp SSEEEEESSTTSSHHHHH----------------HHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHH----------------HHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhcc
Confidence 578999999999999654 667777665555556666553322 123567788899988877765
Q ss_pred C
Q 037717 159 E 159 (582)
Q Consensus 159 ~ 159 (582)
+
T Consensus 66 ~ 66 (183)
T PF00625_consen 66 G 66 (183)
T ss_dssp T
T ss_pred c
Confidence 5
No 373
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.53 E-value=0.36 Score=46.92 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCeEEEECCCCCchhchHhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~ 99 (582)
++.++++||.|+||||.+-.
T Consensus 29 ~~~~~itGpNg~GKStlLk~ 48 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQ 48 (213)
T ss_pred ceEEEEECCCCCChHHHHHH
Confidence 37899999999999988743
No 374
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.49 E-value=0.67 Score=47.89 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
-+.+.+...|....++++|||++|..+ ....=+++|. +...|+..+|+.|.
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae~m~--~~aaNaLLK~-LEEPp~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAETMN--EAAANALLKT-LEEPGNGTLILIAP 161 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchhhcC--HHHHHHHHHH-HhCCCCCeEEEEEC
Confidence 345556566778899999999998433 2233334444 34455555555544
No 375
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.48 E-value=0.27 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.2
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.|+.||||||++-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l 47 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRAL 47 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999887443
No 376
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.43 E-value=0.34 Score=56.92 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCCCCCCCceEeecccCCCcc-hhHHHHHHHHHHhhCC-------CceEEEecccCChHHHHhhh
Q 037717 149 DCMLLREIVIEPSLESYSVLIVDEAQERTLS-TDNLFGLLKDLINYRP-------DLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 149 ~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~-~d~ll~~lk~~~~~~~-------~~kii~~SAT~~~~~~~~~f 215 (582)
.|.|...+.. ..+++|++||++.-... .+.++.++..-.-... .-.+++|+..+..+.+.+.+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 4566666654 45799999999832222 2334433322100000 12566677666555555543
No 377
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.07 Score=58.16 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=21.7
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCcc
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~ 124 (582)
+-+++.||+||||| .+|+.+|.+++.++
T Consensus 224 rGvLlHGPPGCGKT----------------~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKT----------------SLANAIAGELGVPF 251 (802)
T ss_pred CceeeeCCCCccHH----------------HHHHHHhhhcCCce
Confidence 45899999999999 34466777777654
No 378
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.36 E-value=0.19 Score=55.07 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=14.8
Q ss_pred CCCeEEEECCCCCchhch
Q 037717 79 GYPVLAIVGETGSGKTTQ 96 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ 96 (582)
..+-+++.||+|||||+.
T Consensus 258 ~pkGILL~GPpGTGKTll 275 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLT 275 (489)
T ss_pred CCceEEEECCCCCcHHHH
Confidence 346699999999999944
No 379
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.34 E-value=0.049 Score=52.31 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=15.0
Q ss_pred eEEEECCCCCchhchHh
Q 037717 82 VLAIVGETGSGKTTQIP 98 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip 98 (582)
.++|+|||||||||.+-
T Consensus 3 lilI~GptGSGKTTll~ 19 (198)
T cd01131 3 LVLVTGPTGSGKSTTLA 19 (198)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998873
No 380
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.30 E-value=1.1 Score=45.95 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=64.9
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc------------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCC
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE------------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSD 140 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~------------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~ 140 (582)
+.+.++++||-|||||+.+-..+.+ --+++...++..++.++... +..+|- +. +
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs---ft----e 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS---FT----E 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc---cc----h
Confidence 5677999999999999887665543 33556666777777666432 111110 00 0
Q ss_pred CccEEEEChHHHHHHHHcCCCCCCCC-ceEeecccCCCc-chhH-HHHHHHHHHhhCCCceEEEecccCChHH
Q 037717 141 KTVLKYMTDCMLLREIVIEPSLESYS-VLIVDEAQERTL-STDN-LFGLLKDLINYRPDLKLLISSATLDAEK 210 (582)
Q Consensus 141 ~t~I~~~T~g~Ll~~l~~~~~l~~~~-~vViDE~HeR~~-~~d~-ll~~lk~~~~~~~~~kii~~SAT~~~~~ 210 (582)
+-..|+..+..+..-.+.. ++|+||++-... .-.. +..++-.....+..+-+|++|--.|.-+
T Consensus 120 -------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE 185 (408)
T KOG2228|consen 120 -------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILE 185 (408)
T ss_pred -------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHH
Confidence 1134555665544444443 457788873222 2222 2333333333455677788877776533
No 381
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.31 Score=51.40 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=13.9
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.+++|.|+||+|||+.+
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 35899999999999544
No 382
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.24 E-value=0.21 Score=58.26 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---Ce-----E--EE
Q 037717 318 ARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GK-----C--FR 387 (582)
Q Consensus 318 ~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~-----~--~~ 387 (582)
.++.|++-+.+..|.|-|++-.+. .....-|.....|-+||.=|..- |. - ..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~------------------~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LT 562 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIA------------------KLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLN 562 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEE------------------EeccCCchHHHHHHhccceeccccccCccccCccEEEE
Confidence 689999999999999999775444 11123455678999999988652 32 1 22
Q ss_pred eeChhhhhhhhh--hhhHhhhh--H---HHHHHHHhcCCccccccCCCCchHHHHHHHHHHHHHcCCCcCCCccchhch
Q 037717 388 LYTLHNYHRIWM--TILCQKYN--E---LIWKMLSLFSNVLVNFDFIDPPLEEALLKAFELLYALGALNKAGQLTRVGR 459 (582)
Q Consensus 388 L~~~~~~~~~~~--~pei~r~~--~---~~L~l~~l~~~~~~~f~~~~~p~~~~i~~al~~L~~lgal~~~~~lT~lG~ 459 (582)
.+-.+.|+.+.. .-||.... . -.+....+..-.+.. ..+.|- .....-...|...|.||.+|++|+-++
T Consensus 563 vianesy~dFa~~LQ~EI~~~~~~~~~~~~~~~~~f~~i~~~~-~~~~~~--~~~~~l~~~L~~~~~Id~~~~~~~~~~ 638 (986)
T PRK15483 563 YLIDYDEKDFASKLVGEINSDSKVQLNEEKLTEEMIQKIVTEK-QKVDPD--FTELRLLEDLDDKKIIDRSNNFKEDGF 638 (986)
T ss_pred EEeCccHHHHHHHHHHHHHhhcccccccccccHHHHhcccccc-eecCcc--ccHHHHHHHHHHcCccCccCcccHhHH
Confidence 223334444333 23432210 0 000000000000000 111211 123355788999999999999998776
No 383
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.23 E-value=0.22 Score=54.19 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCCCccEEEEChHHHHHHHHcCCC-------CCCCCce-EeecccCCCcc-----hh---H---HHHHHHHHHhhCCCce
Q 037717 138 TSDKTVLKYMTDCMLLREIVIEPS-------LESYSVL-IVDEAQERTLS-----TD---N---LFGLLKDLINYRPDLK 198 (582)
Q Consensus 138 ~~~~t~I~~~T~g~Ll~~l~~~~~-------l~~~~~v-ViDE~HeR~~~-----~d---~---ll~~lk~~~~~~~~~k 198 (582)
.++...|.|+|.+-|...+.+... |.+..+| +-||+|.-... .| . .-..++-..+.+++--
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 456678999999888776654321 4555554 55999911100 00 0 1123444456778888
Q ss_pred EEEecccC--ChHHHHhh
Q 037717 199 LLISSATL--DAEKFSDY 214 (582)
Q Consensus 199 ii~~SAT~--~~~~~~~~ 214 (582)
++.+|||. +....++|
T Consensus 158 ~lef~at~~k~k~v~~ky 175 (812)
T COG3421 158 LLEFSATIPKEKSVEDKY 175 (812)
T ss_pred eehhhhcCCccccHHHHh
Confidence 88899999 44445555
No 384
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.18 E-value=0.11 Score=60.16 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
..-+++.||+|||||+.+ +.+|.+.+..+ ..+...... .-.+.-.+..++.+...
T Consensus 487 ~~giLL~GppGtGKT~la----------------kalA~e~~~~f-----i~v~~~~l~----~~~vGese~~i~~~f~~ 541 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA----------------KAVATESGANF-----IAVRGPEIL----SKWVGESEKAIREIFRK 541 (733)
T ss_pred CceEEEECCCCCCHHHHH----------------HHHHHhcCCCE-----EEEehHHHh----hcccCcHHHHHHHHHHH
Confidence 345889999999999554 55566655432 111111100 01122233344444433
Q ss_pred CCCCCCCceEeeccc----CCCcch-----h-HHHHHHHHHHhhCCCceEEEecccCChHH
Q 037717 160 PSLESYSVLIVDEAQ----ERTLST-----D-NLFGLLKDLINYRPDLKLLISSATLDAEK 210 (582)
Q Consensus 160 ~~l~~~~~vViDE~H----eR~~~~-----d-~ll~~lk~~~~~~~~~kii~~SAT~~~~~ 210 (582)
..-...++|+|||+| .|+... + ++-.++..+-...+.-+++++-||-.++.
T Consensus 542 A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 542 ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDI 602 (733)
T ss_pred HHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhh
Confidence 333455899999998 444321 1 12223333222223345667767754443
No 385
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.47 Score=51.18 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=36.8
Q ss_pred HHcCCCCCCCCceEeecccCCCcc--------hhHHHHHHHHHHhhCCC--ceEEEecccCChHHHHh
Q 037717 156 IVIEPSLESYSVLIVDEAQERTLS--------TDNLFGLLKDLINYRPD--LKLLISSATLDAEKFSD 213 (582)
Q Consensus 156 l~~~~~l~~~~~vViDE~HeR~~~--------~d~ll~~lk~~~~~~~~--~kii~~SAT~~~~~~~~ 213 (582)
...+..-+..++||+|++. |-++ ...++..|+-+++..|. .|++++..|-..+.+.+
T Consensus 590 ~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~ 656 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE 656 (744)
T ss_pred HHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH
Confidence 3345556778999999996 4433 34566666666665543 47888877766665554
No 386
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.10 E-value=0.1 Score=53.29 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=33.5
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCc-eEEEecc
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDL-KLLISSA 204 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~-kii~~SA 204 (582)
+--.+-|+-.+.......+.+-+++|+||-= .|+|......+...+.....+- +.|++|-
T Consensus 134 ~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~~g~~tvliss 194 (293)
T COG1131 134 VRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAKEGGVTILLST 194 (293)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3334556655554444456667999999996 6777655444443333332222 4555543
No 387
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.03 E-value=0.81 Score=43.21 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=58.1
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc-CCCCccEEEEChHHHHHHHHc
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC-TSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~-~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
++.++++||+||||+|++.. +.++....++..+.+..|.-.. ...+.+..|+|..-+.+.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~----------------L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~ 65 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAE----------------LIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKS 65 (184)
T ss_pred CcEEEEECCCCCCHHHHHHH----------------HHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHc
Confidence 46789999999999977633 3333211222333333332211 113567888998888877765
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC-ChHHHHhh
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL-DAEKFSDY 214 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~~~~~~~~ 214 (582)
+. ++=-.++|. .........++.++. .-+.+++-.++ .+..+.+.
T Consensus 66 g~------fve~~~~~g--~~YGt~~~~i~~~~~---~~~~~ild~~~~~~~~l~~~ 111 (184)
T smart00072 66 GL------FLEWGEYSG--NYYGTSKETIRQVAE---QGKHCLLDIDPQGVKQLRKA 111 (184)
T ss_pred CC------eEEEEEEcC--cCcccCHHHHHHHHH---cCCeEEEEECHHHHHHHHHh
Confidence 53 333334442 222233333444443 23677777776 45555543
No 388
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.00 E-value=0.092 Score=57.92 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=15.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|||||+.+
T Consensus 88 ~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 346999999999999665
No 389
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.99 E-value=0.083 Score=55.84 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+.+
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999665
No 390
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.95 E-value=0.16 Score=57.49 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc--------------------------------------------
Q 037717 68 PFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------------------------------------- 103 (582)
Q Consensus 68 ~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------------------------------------- 103 (582)
.+-..++..+...++.++..|||+|||..+.-..+-
T Consensus 28 a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~~ 107 (945)
T KOG1132|consen 28 AFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIACY 107 (945)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCccccc
Q ss_pred ----------------------------------------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc
Q 037717 104 ----------------------------------------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC 137 (582)
Q Consensus 104 ----------------------------------------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~ 137 (582)
-+++.-.+....++.+.+..-+..++-.+.....
T Consensus 108 ~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~~~~~~sl 187 (945)
T KOG1132|consen 108 TGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYKIVEEKSL 187 (945)
T ss_pred cCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccccccccccccc
Q ss_pred CC-------------------------------CCccEEEEChHHHHHHHHcCCC---CCCCCceEeeccc
Q 037717 138 TS-------------------------------DKTVLKYMTDCMLLREIVIEPS---LESYSVLIVDEAQ 174 (582)
Q Consensus 138 ~~-------------------------------~~t~I~~~T~g~Ll~~l~~~~~---l~~~~~vViDE~H 174 (582)
.. +.++|+||-...|++-..+... |.+ ++||+||||
T Consensus 188 ~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 188 QPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred ccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
No 391
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.95 E-value=0.073 Score=60.76 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=58.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhh---hhcc-----chHHHHHHHHHHHHHHhCCccCcE
Q 037717 56 MLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQ---YLYE-----PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 56 ~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~---~ll~-----P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
...+.-.+-|+.+.|.+++.. ....++|.|..|||||+.+-. +++. |.+++++.-.++.|.+|...+...
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 344444568899999888754 334578889999999965533 2222 555555444444444444333222
Q ss_pred EeEEEeecccCCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecc
Q 037717 128 VGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEA 173 (582)
Q Consensus 128 vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~ 173 (582)
+| ...+.+.|--.+-..+.... ....++.+..|+-
T Consensus 265 lg-----------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~ 301 (684)
T PRK11054 265 LG-----------TEDITARTFHALALHIIQQGSKKVPVISKLENDSK 301 (684)
T ss_pred cC-----------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchH
Confidence 22 14577888765554443321 1233444555654
No 392
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.94 E-value=0.25 Score=53.49 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=21.4
Q ss_pred HHHHHHhCCCeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
.++.++..+.++++.||+|+|||+.+
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHH
Confidence 35566778999999999999999554
No 393
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=92.88 E-value=0.33 Score=44.85 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=16.8
Q ss_pred CCeEEEECCCCCchhchHhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~ 99 (582)
++.++|+||.|||||+.+-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~ 40 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDA 40 (162)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35899999999999987744
No 394
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.41 Score=53.40 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHh--------CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc
Q 037717 66 IYPFWEELLQAVS--------GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC 137 (582)
Q Consensus 66 i~~~~~~il~~i~--------~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~ 137 (582)
+...++.|++.|. +++++..+||+|-||| ++++.+|..++... +-+++.+-..
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKT----------------SI~kSIA~ALnRkF---fRfSvGG~tD 476 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKT----------------SIAKSIARALNRKF---FRFSVGGMTD 476 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcc----------------cHHHHHHHHhCCce---EEEecccccc
Confidence 5556788888774 6789999999999999 44555666665432 1122221111
Q ss_pred CC--CCccEEE--EChHHHHHHHHcCCCCCCCCceEeeccc--CCCcchhHHHHHH
Q 037717 138 TS--DKTVLKY--MTDCMLLREIVIEPSLESYSVLIVDEAQ--ERTLSTDNLFGLL 187 (582)
Q Consensus 138 ~~--~~t~I~~--~T~g~Ll~~l~~~~~l~~~~~vViDE~H--eR~~~~d~ll~~l 187 (582)
.. .+-+=.| +-||.+.+.|..-.. +=-++.|||++ -++...|-.-++|
T Consensus 477 vAeIkGHRRTYVGAMPGkiIq~LK~v~t--~NPliLiDEvDKlG~g~qGDPasALL 530 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKIIQCLKKVKT--ENPLILIDEVDKLGSGHQGDPASALL 530 (906)
T ss_pred HHhhcccceeeeccCChHHHHHHHhhCC--CCceEEeehhhhhCCCCCCChHHHHH
Confidence 11 1222233 459999998853221 12478999999 4556666544444
No 395
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.86 E-value=0.34 Score=49.71 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=37.2
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhh
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDY 214 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (582)
+.-.+.|+..+.......+.+-.++++||.- .+++......+.+.+.....+.-+|+.|-- .+.+.++
T Consensus 131 ~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~~~tiii~sH~--l~~~~~~ 198 (301)
T TIGR03522 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGKDKTIILSTHI--MQEVEAI 198 (301)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEcCC--HHHHHHh
Confidence 3445666665555545556677999999997 666655433333333222234444444443 3444444
No 396
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.85 E-value=0.44 Score=53.70 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.++.+++.||+||||||.+-.
T Consensus 109 ~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 346799999999999988744
No 397
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.80 E-value=0.12 Score=53.41 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=21.7
Q ss_pred HHHhCCCeEEEECCCCCchhchHhhh
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.++..+.+++++|+|||||||++-.+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al 164 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSL 164 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHH
Confidence 35668899999999999999987443
No 398
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.80 E-value=0.063 Score=46.67 Aligned_cols=16 Identities=50% Similarity=0.725 Sum_probs=13.9
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
+++|+|++||||||.+
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999765
No 399
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.16 Score=55.45 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=65.5
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
.-++++||+|||||.+ |+.||.|.+..+- +|++-.- -+-.|+-.++..|.+....
T Consensus 546 sGvLL~GPPGCGKTLl----------------AKAVANEag~NFi-----sVKGPEL----lNkYVGESErAVR~vFqRA 600 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLL----------------AKAVANEAGANFI-----SVKGPEL----LNKYVGESERAVRQVFQRA 600 (802)
T ss_pred CceEEeCCCCccHHHH----------------HHHHhhhccCceE-----eecCHHH----HHHHhhhHHHHHHHHHHHh
Confidence 4489999999999943 3556666654321 1111100 1122333445555555444
Q ss_pred CCCCCCceEeeccc----CCCcc-hhHHHHHHHHHHh----hCCCceEEEecccCChHHHHhhhCCCCEEeeCCceecee
Q 037717 161 SLESYSVLIVDEAQ----ERTLS-TDNLFGLLKDLIN----YRPDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVE 231 (582)
Q Consensus 161 ~l~~~~~vViDE~H----eR~~~-~d~ll~~lk~~~~----~~~~~kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~ 231 (582)
--+.-.+|.+||++ .|+-. ...--.++.+++. ......+.++-||--++.+ .|-+.-|||.- +
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI------DpAiLRPGRlD--k 672 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII------DPAILRPGRLD--K 672 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc------chhhcCCCccC--c
Confidence 44556889999999 33321 1122222333322 2223466777788632222 13344477753 4
Q ss_pred EEEecCCchhH
Q 037717 232 LFYTKAPEVDY 242 (582)
Q Consensus 232 ~~~~~~~~~~~ 242 (582)
..|...|....
T Consensus 673 ~LyV~lPn~~e 683 (802)
T KOG0733|consen 673 LLYVGLPNAEE 683 (802)
T ss_pred eeeecCCCHHH
Confidence 45666555443
No 400
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.78 E-value=0.099 Score=48.96 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.0
Q ss_pred eEEEECCCCCchhch
Q 037717 82 VLAIVGETGSGKTTQ 96 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ 96 (582)
++++.||||+|||..
T Consensus 5 ~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 688999999999943
No 401
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.75 E-value=0.54 Score=50.05 Aligned_cols=145 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhCCCe-----EEEECCCCCchhchHhhhhcc----------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 64 LPIYPFWEELLQAVSGYPV-----LAIVGETGSGKTTQIPQYLYE----------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~-----viv~a~TGSGKTt~ip~~ll~----------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
+|+-+||.+.+..+..... -|+.-+-|-|||.|...+++. -.-++.+|.-..++.-....+...+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~ 262 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYI 262 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEE
Q ss_pred eEEEeecccCCC--CccEEEEChHHHHHHHHcCCC-CCC---------------CCceEeeccc---CCCcchhHHHHHH
Q 037717 129 GYSIRFEDCTSD--KTVLKYMTDCMLLREIVIEPS-LES---------------YSVLIVDEAQ---ERTLSTDNLFGLL 187 (582)
Q Consensus 129 gy~v~~~~~~~~--~t~I~~~T~g~Ll~~l~~~~~-l~~---------------~~~vViDE~H---eR~~~~d~ll~~l 187 (582)
-++-.-+....+ +.+++.+|..++-........ +.. +--||+|||| +|..++--..--|
T Consensus 263 YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L 342 (791)
T KOG1002|consen 263 YHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFAL 342 (791)
T ss_pred EecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhh
Q ss_pred HHHHhhCCCceEEEecccCChHHHHhhh
Q 037717 188 KDLINYRPDLKLLISSATLDAEKFSDYF 215 (582)
Q Consensus 188 k~~~~~~~~~kii~~SAT~~~~~~~~~f 215 (582)
+.-.+ ..+|.|+=-..+.+.|
T Consensus 343 ~tt~r-------w~LSGTPLQNrigEly 363 (791)
T KOG1002|consen 343 ETTYR-------WCLSGTPLQNRIGELY 363 (791)
T ss_pred Hhhhh-------hhccCCcchhhHHHHH
No 402
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=1 Score=48.55 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=76.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCc--cccccCC
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAE--TSLTIDG 336 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae--~gidIp~ 336 (582)
...|||+.|+.-+--.+-+.+.+. ++....+|---+.+.-.++=+.|-.|..+|++-|.-+- +--+|.|
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikG 622 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKG 622 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecc
Confidence 356999999999988888888773 33344443322233323333446778899999996543 4678899
Q ss_pred eeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-----CCeEEEeeChhhhhh
Q 037717 337 IKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-----PGKCFRLYTLHNYHR 396 (582)
Q Consensus 337 v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-----~G~~~~L~~~~~~~~ 396 (582)
|+-|| .|.|++. |---++...+.+|+--.| .-.|-.||++-+--.
T Consensus 623 Vk~vV--------fYqpP~~-------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~ 672 (698)
T KOG2340|consen 623 VKNVV--------FYQPPNN-------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIR 672 (698)
T ss_pred eeeEE--------EecCCCC-------cHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHH
Confidence 99999 6665544 444567788888875443 246889999865443
No 403
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.71 E-value=0.29 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
+..|+.+.++||+||||||.+-..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999999999886553
No 404
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=92.64 E-value=0.23 Score=47.13 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=32.6
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC--ChHHHHh
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL--DAEKFSD 213 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~--~~~~~~~ 213 (582)
-|.+.++| +++|+||.- -|++.-....+...+.+.+..-|.|++|.-. +++.+.+
T Consensus 145 ARAlvh~P-----~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 145 ARALVHDP-----SILVLDEPT-SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred HHHHhcCC-----CeEEEcCCC-CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 34555555 999999996 5665544444444444455555666666544 5555554
No 405
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.58 E-value=0.3 Score=58.02 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.0
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhc
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLY 102 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll 102 (582)
....++++|+||.|+||||.+-+++.
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999988764
No 406
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.55 E-value=0.33 Score=56.11 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCC
Q 037717 249 TALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIA 328 (582)
Q Consensus 249 ~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ia 328 (582)
.+..+.....++++++-+||.--+.++++.|.......+ .....+. +||.|+..+++.+.+.+.+|..+|+|+|+-.
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 344444445568899999999999999999988776555 2345555 9999999999999999999999999999854
No 407
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.42 Score=46.81 Aligned_cols=27 Identities=41% Similarity=0.405 Sum_probs=22.7
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhcc
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYE 103 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~ 103 (582)
+..++.-+|.||.||||||++-.+..+
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcc
Confidence 467888999999999999998776554
No 408
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.47 E-value=0.073 Score=47.71 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=14.3
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
+++++|++||||||.+
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5799999999999776
No 409
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.46 E-value=0.15 Score=58.05 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.4
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.++++||+|||||+.+
T Consensus 186 ~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLA 202 (644)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45999999999999654
No 410
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.42 E-value=0.097 Score=55.21 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=17.2
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..++|+|||||||||.+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLA 166 (372)
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 45667899999999999877
No 411
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.42 E-value=0.58 Score=45.45 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.4
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|+||.||||||++-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l 48 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKML 48 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999877544
No 412
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.40 E-value=0.34 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.3
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|+|++||||||++-.+
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L 50 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAF 50 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 568899999999999999877544
No 413
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.36 E-value=0.43 Score=53.86 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=21.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
+..++.+.|+|++||||||++-..+
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~ 382 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQ 382 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4588999999999999999886553
No 414
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.30 E-value=0.2 Score=49.31 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=22.2
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhcc
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYE 103 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~ 103 (582)
+-.+..++|.|++|||||+..-+++++
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 345788999999999999888777654
No 415
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.28 E-value=0.07 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.0
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+.++..+++.||+||||||.+-.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~ 48 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRM 48 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 56889999999999999988743
No 416
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.28 E-value=0.095 Score=54.91 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=17.5
Q ss_pred CCCeEEEECCCCCchhchHh
Q 037717 79 GYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip 98 (582)
.+..++|+|||||||||.+-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 46789999999999998873
No 417
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.26 E-value=0.25 Score=52.85 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=14.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.++++.||||||||+.+
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 47999999999999654
No 418
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.26 Score=52.37 Aligned_cols=104 Identities=26% Similarity=0.311 Sum_probs=59.1
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
+-+++.||.|+|||.++ +.+|.|.+..+ +.+. .+.-+.=.++=.+.+++.+..-.
T Consensus 187 rglLLfGPpgtGKtmL~----------------~aiAsE~~atf-----f~iS----assLtsK~~Ge~eK~vralf~vA 241 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLA----------------KAIATESGATF-----FNIS----ASSLTSKYVGESEKLVRALFKVA 241 (428)
T ss_pred chhheecCCCCchHHHH----------------HHHHhhhcceE-----eecc----HHHhhhhccChHHHHHHHHHHHH
Confidence 34778999999999443 44455543221 1110 00001111222267777776555
Q ss_pred CCCCCCceEeeccc----CC---------CcchhHHHHHHHHHHhhCCCceEEEecccCChHHH
Q 037717 161 SLESYSVLIVDEAQ----ER---------TLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 161 ~l~~~~~vViDE~H----eR---------~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~ 211 (582)
.....++++|||+| +| -+.+++++...-. ...++-|+++++||=-+..+
T Consensus 242 r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~--~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 242 RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK--NSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc--cCCCCCeEEEEecCCCchHH
Confidence 56778999999999 33 3345555554432 23356699999999743333
No 419
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.13 E-value=0.41 Score=56.23 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHHHh-----CCCeEEEECCCCCchhchH
Q 037717 64 LPIYPFWEELLQAVS-----GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 64 lPi~~~~~~il~~i~-----~~~~viv~a~TGSGKTt~i 97 (582)
=|+.....++-..+. ...+.+++||.|+|||+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 456555555444442 2357899999999999665
No 420
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.08 E-value=0.58 Score=54.22 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHh-----CCCeEEEECCCCCchhchH
Q 037717 65 PIYPFWEELLQAVS-----GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 65 Pi~~~~~~il~~i~-----~~~~viv~a~TGSGKTt~i 97 (582)
|+.....++-..+. ...++++.||+|+|||+.+
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 66655444433332 3467899999999999654
No 421
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.58 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.5
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|.|+.||||||++-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l 46 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLI 46 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999877554
No 422
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.06 E-value=0.75 Score=47.58 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHhcCCCChHHHHHHHHHHhCCC--eEEEECCCCCchhchH
Q 037717 58 QEERKTLPIYPFWEELLQAVSGYP--VLAIVGETGSGKTTQI 97 (582)
Q Consensus 58 ~~~r~~lPi~~~~~~il~~i~~~~--~viv~a~TGSGKTt~i 97 (582)
++...-.|...+|.-.++++...+ .|.+.|+-|||||.++
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLA 262 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLA 262 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHH
Confidence 345567889999999999998764 5788999999999443
No 423
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.05 E-value=0.12 Score=53.21 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEECCCCCchhchHhhhhc
Q 037717 72 ELLQAVSGYPVLAIVGETGSGKTTQIPQYLY 102 (582)
Q Consensus 72 ~il~~i~~~~~viv~a~TGSGKTt~ip~~ll 102 (582)
-+..+++.+++++++|+|||||||++-..+.
T Consensus 135 yL~~~ie~~~siii~G~t~sGKTt~lnall~ 165 (312)
T COG0630 135 YLWLAIEARKSIIICGGTASGKTTLLNALLD 165 (312)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHH
Confidence 3778899999999999999999988755443
No 424
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.01 E-value=0.1 Score=48.94 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
++.+++.||+||||||++
T Consensus 1 g~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLV 18 (180)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999876
No 425
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.01 E-value=0.63 Score=57.41 Aligned_cols=53 Identities=8% Similarity=0.107 Sum_probs=35.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCC-CCeEEEEe-cCCCCHHHHHHhc
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKI-AELIICPI-YANLPTELQAKIF 311 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~-~~~~v~~l-h~~l~~~~r~~v~ 311 (582)
...+||+.++.++-..+...+++.+...|.-- ....+-.+ -.+++..++..+-
T Consensus 1091 R~~TLIIa~tN~~R~aIN~~IR~~L~~~G~Lg~~~~~~~~L~~~~~T~aE~r~a~ 1145 (1623)
T PRK14712 1091 REQTLIVTHLNEDRRVLNSMIHDAREKAGELGQVQVMVPVLNTANIRDGELRRLS 1145 (1623)
T ss_pred hcceEEEecccHHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCHHHHhhhh
Confidence 46899999999999999998888765433211 12333333 3678887776553
No 426
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.97 E-value=0.54 Score=55.24 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHH-----hCCCeEEEECCCCCchhchH
Q 037717 64 LPIYPFWEELLQAV-----SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 64 lPi~~~~~~il~~i-----~~~~~viv~a~TGSGKTt~i 97 (582)
=|+....+++-..+ ...+++++.||+|+|||+.+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHH
Confidence 36655555544333 24567899999999999665
No 427
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=91.96 E-value=0.33 Score=55.99 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.5
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|+|++||||||++-..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL 511 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLL 511 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987554
No 428
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.95 E-value=0.38 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.7
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.++||+||||||++-..
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999987655
No 429
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.94 E-value=0.14 Score=55.33 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=17.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+++++++||+||||||.+
T Consensus 109 ~~~iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTV 127 (634)
T ss_pred CceEEEEeCCCCCCchhHH
Confidence 5789999999999999887
No 430
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.93 E-value=0.42 Score=56.25 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHh-----CCCeEEEECCCCCchhchH
Q 037717 64 LPIYPFWEELLQAVS-----GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 64 lPi~~~~~~il~~i~-----~~~~viv~a~TGSGKTt~i 97 (582)
=|+.....++-..+. ...++++.||+|+|||+.+
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHH
Confidence 466655655555552 4458999999999999665
No 431
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.34 Score=55.31 Aligned_cols=73 Identities=29% Similarity=0.422 Sum_probs=40.0
Q ss_pred CeEEEECCCCCchhchH---hhhhcc----chHHH--HHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHH
Q 037717 81 PVLAIVGETGSGKTTQI---PQYLYE----PRWVA--AMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCM 151 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i---p~~ll~----P~r~~--a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~ 151 (582)
.+.+..||||.|||-++ ..+|.. .-|+= -..-...|++..|.+.| -|||.- -|.
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPG-YVGyee----------------GG~ 584 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPG-YVGYEE----------------GGQ 584 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCC-Cceecc----------------ccc
Confidence 36888999999999433 233332 00110 00001234555555554 456532 234
Q ss_pred HHHHHHcCCCCCCCCceEeeccc
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQ 174 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~H 174 (582)
|.....++| |++|.+||+.
T Consensus 585 LTEaVRr~P----ySViLlDEIE 603 (786)
T COG0542 585 LTEAVRRKP----YSVILLDEIE 603 (786)
T ss_pred hhHhhhcCC----CeEEEechhh
Confidence 444454444 8999999986
No 432
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.88 E-value=0.83 Score=45.34 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=44.3
Q ss_pred EEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchh---HHHHHHHHHHhhCCCceEEEecccCChHHHHhhhCCCCE
Q 037717 144 LKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTD---NLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFGSAPI 220 (582)
Q Consensus 144 I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d---~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~~~~v 220 (582)
|-=.+-|..-|-++.....++-+++++||-= -++|.. .++.+++++.+. =+.|+| -|-|.....+||+ .+
T Consensus 137 i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~e---g~tIl~-vtHDL~~v~~~~D--~v 209 (254)
T COG1121 137 IGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQE---GKTVLM-VTHDLGLVMAYFD--RV 209 (254)
T ss_pred ccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHC---CCEEEE-EeCCcHHhHhhCC--EE
Confidence 3344556666666666667777999999985 344432 344555554332 244443 3457888888874 34
Q ss_pred EeeCC
Q 037717 221 FKIPG 225 (582)
Q Consensus 221 ~~i~g 225 (582)
+.+..
T Consensus 210 i~Ln~ 214 (254)
T COG1121 210 ICLNR 214 (254)
T ss_pred EEEcC
Confidence 44433
No 433
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.83 E-value=0.86 Score=47.21 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
+.+.+...+....++++|||+||..+ ....-++||.+-.-.++..+|+.|.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~m~--~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAERLT--EAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred HHHHHhhccccCCceEEEEechhhhC--HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 34445556667889999999999433 3344555665433233444444433
No 434
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.14 Score=51.25 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred eEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCC
Q 037717 82 VLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS 161 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~ 161 (582)
-+++-||+|+|||+++ +.||.|-+... ++|...+. ..=+.+-.+.|.+.|..-..
T Consensus 168 giLLyGPPGTGKSYLA----------------KAVATEAnSTF-----FSvSSSDL----vSKWmGESEkLVknLFemAR 222 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLA----------------KAVATEANSTF-----FSVSSSDL----VSKWMGESEKLVKNLFEMAR 222 (439)
T ss_pred eEEEeCCCCCcHHHHH----------------HHHHhhcCCce-----EEeehHHH----HHHHhccHHHHHHHHHHHHH
Confidence 4889999999999543 55666655221 22221111 11233445566665543323
Q ss_pred CCCCCceEeeccc-------------CCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 162 LESYSVLIVDEAQ-------------ERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 162 l~~~~~vViDE~H-------------eR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
-..-+.|.|||++ .|.+.+++|..+--- -+.+-.++++.||-
T Consensus 223 e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV---G~d~~gvLVLgATN 277 (439)
T KOG0739|consen 223 ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV---GNDNDGVLVLGATN 277 (439)
T ss_pred hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc---ccCCCceEEEecCC
Confidence 4456999999999 233445554432110 12345677788885
No 435
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.68 E-value=0.12 Score=49.68 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=17.5
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..++.++++||+||||||++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36788999999999999776
No 436
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.62 E-value=0.1 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=18.9
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.+.||+||||||++..
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHH
Confidence 34578899999999999988743
No 437
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.57 E-value=0.46 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
+..++.+.|+||+||||||.+-...
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~ 387 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLT 387 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999999999876553
No 438
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.56 E-value=0.84 Score=47.10 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHcCCCCCCCCceEeecccCCC
Q 037717 156 IVIEPSLESYSVLIVDEAQERT 177 (582)
Q Consensus 156 l~~~~~l~~~~~vViDE~HeR~ 177 (582)
+...|...+..++||||+|..+
T Consensus 85 ~~~~p~~~~~kv~iI~~ad~m~ 106 (313)
T PRK05564 85 VNKKPYEGDKKVIIIYNSEKMT 106 (313)
T ss_pred HhcCcccCCceEEEEechhhcC
Confidence 3356778899999999998544
No 439
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.56 E-value=0.75 Score=57.44 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=28.9
Q ss_pred CCChHHHHHHHHHHhC--CCeEEEECCCCCchhchHh
Q 037717 64 LPIYPFWEELLQAVSG--YPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 64 lPi~~~~~~il~~i~~--~~~viv~a~TGSGKTt~ip 98 (582)
..+..-|.+.+..+.. +++++|+|..|+||||.+-
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~ 1002 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR 1002 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH
Confidence 4567788888888776 4799999999999998763
No 440
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.54 E-value=0.87 Score=46.65 Aligned_cols=119 Identities=26% Similarity=0.309 Sum_probs=71.2
Q ss_pred CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEE
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKY 146 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~ 146 (582)
.+++++|-.|+||||.+-.+... --|.+|+..-+-.++..|..+ +... .-++.+.+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v-------I~~~-~G~DpAaV-- 209 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV-------ISGK-EGADPAAV-- 209 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE-------EccC-CCCCcHHH--
Confidence 47888999999999888655332 557888877777777766543 1111 11111112
Q ss_pred EChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh-CCCc------eEEEecccC--ChHHHHhhhC
Q 037717 147 MTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY-RPDL------KLLISSATL--DAEKFSDYFG 216 (582)
Q Consensus 147 ~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~-~~~~------kii~~SAT~--~~~~~~~~f~ 216 (582)
..+-+ ....-+++++|++|=|- |..+-.-|+.-|+++.+. .|+. .++.+=||. |.-.-++.|.
T Consensus 210 -----afDAi-~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 210 -----AFDAI-QAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred -----HHHHH-HHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 22222 12235788999999997 665655566666666542 2332 566668988 4444444553
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.51 E-value=0.1 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.3
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..|+++.+.||+||||||++
T Consensus 26 v~~GEfvsilGpSGcGKSTLL 46 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLL 46 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 568999999999999999987
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.50 E-value=0.2 Score=48.46 Aligned_cols=18 Identities=56% Similarity=0.789 Sum_probs=15.8
Q ss_pred CeEEEECCCCCchhchHh
Q 037717 81 PVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip 98 (582)
.++|++||+|+||||.+-
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 579999999999998763
No 443
>PF13871 Helicase_C_4: Helicase_C-like
Probab=91.48 E-value=0.93 Score=45.65 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=48.2
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC
Q 037717 311 FEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP 382 (582)
Q Consensus 311 ~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 382 (582)
.+.|.+|+.+|+|-|..+.+||.+.+-.-+-| .+.++......|.|-..++|..||+-|.+.
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ 115 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSNQ 115 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhcccccccc
Confidence 35688999999999999999999886444442 233334456678899999999999999974
No 444
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.44 E-value=0.58 Score=59.70 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCChHHHHHHHHHHhC--CCeEEEECCCCCchhchH
Q 037717 63 TLPIYPFWEELLQAVSG--YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~--~~~viv~a~TGSGKTt~i 97 (582)
...+.+-|.+.+..+.. +++++|+|..|+||||.+
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l 1053 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML 1053 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH
Confidence 34678888888888754 478999999999999887
No 445
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.38 E-value=0.92 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.4
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|.||.||||||++-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l 48 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLI 48 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 458899999999999999877544
No 446
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.36 E-value=0.21 Score=51.35 Aligned_cols=37 Identities=32% Similarity=0.253 Sum_probs=25.8
Q ss_pred ChHHHHHHH-HHHhCCCeEEEECCCCCchhchHhhhhc
Q 037717 66 IYPFWEELL-QAVSGYPVLAIVGETGSGKTTQIPQYLY 102 (582)
Q Consensus 66 i~~~~~~il-~~i~~~~~viv~a~TGSGKTt~ip~~ll 102 (582)
+.+.+.+++ .++....+++|+|.|||||||.+-.++.
T Consensus 158 ~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~ 195 (355)
T COG4962 158 MIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSG 195 (355)
T ss_pred cCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHh
Confidence 334444444 4555666999999999999998855433
No 447
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=91.31 E-value=0.18 Score=51.56 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.5
Q ss_pred CCCeEEEECCCCCchh
Q 037717 79 GYPVLAIVGETGSGKT 94 (582)
Q Consensus 79 ~~~~viv~a~TGSGKT 94 (582)
.+++++|+||||||||
T Consensus 3 ~~~ii~I~GpTasGKS 18 (300)
T PRK14729 3 ENKIVFIFGPTAVGKS 18 (300)
T ss_pred CCcEEEEECCCccCHH
Confidence 4678999999999999
No 448
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.30 E-value=0.37 Score=55.19 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=60.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCee
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIK 338 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~ 338 (582)
++++||.+|+++-+.++.+.+.+.+ +..+..+||+++..+|.+++.....|..+|||+|.-+- -+.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 5789999999999999999887743 24688899999999999998888889999999997443 25566777
Q ss_pred EEE
Q 037717 339 YVI 341 (582)
Q Consensus 339 ~VI 341 (582)
.||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 666
No 449
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.30 E-value=0.25 Score=53.94 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=34.9
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChH
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAE 209 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~ 209 (582)
+.......|.-.+|.+.||||+| .+.....=++||.+-.-.+++++|+ ||-+++
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIl--ATTe~~ 160 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFIL--ATTEPQ 160 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEE--ecCCcC
Confidence 44445556778999999999999 4555556667776544333455554 665443
No 450
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.29 E-value=0.2 Score=44.75 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 70 WEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 70 ~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
-+.+...+..+.++++.|+.|+||||.+
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~ 39 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLV 39 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHH
Confidence 3456666778999999999999999776
No 451
>PTZ00293 thymidine kinase; Provisional
Probab=91.29 E-value=0.6 Score=45.09 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=16.8
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+...++.||-+|||||.+-+
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr 23 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMR 23 (211)
T ss_pred ceEEEEEECCCCChHHHHHHH
Confidence 456788999999999986533
No 452
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.26 E-value=0.95 Score=46.79 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
+.+.+...+....++++|||+||.. +....=++||.+-.-.++..+|+.|.-
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae~m--~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPADAI--NRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHhhh--CHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3344444566788999999999943 334445566643332235556666543
No 453
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.36 Score=53.26 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=58.3
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHH
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREI 156 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l 156 (582)
+.....+++.||+|+|||++. +.++.+.+..+- .+... .-..-.++-.+...+.+
T Consensus 273 ~~~~~giLl~GpPGtGKT~lA----------------kava~~~~~~fi-----~v~~~----~l~sk~vGesek~ir~~ 327 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLA----------------KAVALESRSRFI-----SVKGS----ELLSKWVGESEKNIREL 327 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHH----------------HHHHhhCCCeEE-----EeeCH----HHhccccchHHHHHHHH
Confidence 445567999999999999443 555555544321 11111 11233455566666666
Q ss_pred HcCCCCCCCCceEeeccc----CCCcch-----hHHHHHHHHHHhhCCCceEEEecccC
Q 037717 157 VIEPSLESYSVLIVDEAQ----ERTLST-----DNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 157 ~~~~~l~~~~~vViDE~H----eR~~~~-----d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.....-..-.+|.+||++ .|+... .++-.++..+-.....-.++++-||-
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Confidence 655445666999999999 565443 23333444332122222344555554
No 454
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=91.18 E-value=0.53 Score=53.13 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=20.6
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.++||+||||||.+-..
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll 381 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLL 381 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999887654
No 455
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.16 E-value=0.19 Score=44.18 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 69 FWEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 69 ~~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
.-+.+...+..++++++.|+-||||||.+
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFV 32 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 34567788899999999999999999776
No 456
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.15 E-value=0.14 Score=50.44 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=18.0
Q ss_pred HHhCCCeEEEECCCCCchhchH
Q 037717 76 AVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~i 97 (582)
++.....+|++|+|||||||.+
T Consensus 123 a~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 123 ALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred hcccCceEEEECCCCCCchhhH
Confidence 3456678999999999999765
No 457
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.06 E-value=0.5 Score=55.71 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHh-----CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHh--CCccCc
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVS-----GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEM--GVKLGH 126 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~-----~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~--~~~~g~ 126 (582)
+.+..+..+-=|+.....++-..+. ..++.+++||+|+|||+.+ +.++... +.....
T Consensus 163 l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~----------------~~la~~i~~~~~p~~ 226 (852)
T TIGR03346 163 LTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIV----------------EGLAQRIVNGDVPES 226 (852)
T ss_pred HHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHH----------------HHHHHHHhccCCchh
Q ss_pred EEeEEEeec--ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhCCCceE
Q 037717 127 EVGYSIRFE--DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYRPDLKL 199 (582)
Q Consensus 127 ~vgy~v~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~~~~ki 199 (582)
..|+.+..- ...-.++...--....+.+.+..-..-..-.+|+|||+| ..+-...-...+|+..+ .+.++++
T Consensus 227 l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g~i~~ 305 (852)
T TIGR03346 227 LKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARGELHC 305 (852)
T ss_pred hcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcCceEE
Q ss_pred EEec
Q 037717 200 LISS 203 (582)
Q Consensus 200 i~~S 203 (582)
|+.+
T Consensus 306 IgaT 309 (852)
T TIGR03346 306 IGAT 309 (852)
T ss_pred EEeC
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.04 E-value=0.11 Score=45.34 Aligned_cols=15 Identities=53% Similarity=0.694 Sum_probs=13.2
Q ss_pred EEEECCCCCchhchH
Q 037717 83 LAIVGETGSGKTTQI 97 (582)
Q Consensus 83 viv~a~TGSGKTt~i 97 (582)
++|.|++||||||++
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999775
No 459
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.03 E-value=0.27 Score=48.42 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCceEeeccc----------CCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHH
Q 037717 165 YSVLIVDEAQ----------ERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKF 211 (582)
Q Consensus 165 ~~~vViDE~H----------eR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~ 211 (582)
-.++.|||.+ -||-..++.-++|-.+-....+-=++-.-||-+++.+
T Consensus 211 PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 211 PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 3688899998 2444445555555444333334456666777765544
No 460
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.97 E-value=0.49 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.5
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|+||+||||||++-..
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999877544
No 461
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.94 E-value=0.69 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.6
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.++||+||||||.+-..
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll 364 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLI 364 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 458899999999999999987655
No 462
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.19 Score=50.93 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.2
Q ss_pred hCCCeEEEECCCCCchhch
Q 037717 78 SGYPVLAIVGETGSGKTTQ 96 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ 96 (582)
..|+.+++.||+|+|||++
T Consensus 175 t~NRliLlhGPPGTGKTSL 193 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSL 193 (423)
T ss_pred eeeeEEEEeCCCCCChhHH
Confidence 3578899999999999954
No 463
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.91 E-value=0.46 Score=51.32 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=49.8
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC
Q 037717 261 DILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATN 326 (582)
Q Consensus 261 ~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ 326 (582)
-.|||.||++-+..+.+.|....+ ..++.+..+.|||....|+++++. ...|||||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~-----~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAE-----KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcc-----ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 389999999999999998887654 268999999999999999999987 458999997
No 464
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.88 E-value=0.66 Score=54.63 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.9
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++||||+|||+.+
T Consensus 600 ~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 600 SFLFLGPTGVGKTELC 615 (857)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6889999999999654
No 465
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.86 E-value=0.18 Score=54.66 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHhCCCeEEEECCCCCchhchHhhhhc
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQYLY 102 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ll 102 (582)
-+..+.++++.|++|+||||++-|++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~ 102 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAA 102 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345578999999999999988776643
No 466
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.83 E-value=0.92 Score=47.17 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=32.2
Q ss_pred cCCCChHHHHHHHHHHhCCCe------EEEECCCCCchhchHhhhhcc
Q 037717 62 KTLPIYPFWEELLQAVSGYPV------LAIVGETGSGKTTQIPQYLYE 103 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~------viv~a~TGSGKTt~ip~~ll~ 103 (582)
...|-...|-..+..+..++. +++-|.+|||||..+-+++-.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~ 53 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRK 53 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhh
Confidence 356777788888887776543 488999999999888777654
No 467
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.80 E-value=1.1 Score=46.55 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
+.+.+...|....++++|+|++| +++....-.++|.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~ 136 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKV 136 (325)
T ss_pred HHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHH
Confidence 44455556667889999999998 3344444445553
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.79 E-value=0.12 Score=46.06 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.5
Q ss_pred hCCCeEEEECCCCCchhchHhhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
..++.+.|+|+.||||||++-.+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEEccCCCccccceeee
Confidence 46889999999999999887543
No 469
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.78 E-value=0.55 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.2
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..|+.+.|+|++||||||++-..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL 396 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNAL 396 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 358899999999999999877544
No 470
>PRK13695 putative NTPase; Provisional
Probab=90.77 E-value=1.5 Score=40.96 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=15.2
Q ss_pred EEEECCCCCchhchHhhh
Q 037717 83 LAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 83 viv~a~TGSGKTt~ip~~ 100 (582)
++++|+.||||||.+-.+
T Consensus 3 i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKI 20 (174)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999887543
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.71 E-value=0.15 Score=48.32 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
++.++++||.||||||++
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999876
No 472
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=90.71 E-value=0.46 Score=45.53 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.5
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
++++++||.||||||.+-.
T Consensus 29 ~~~~ltG~Ng~GKStll~~ 47 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKT 47 (200)
T ss_pred eEEEEECCCCCChHHHHHH
Confidence 5799999999999988744
No 473
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.71 E-value=4 Score=46.02 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCchhchHhhh----hc-c--------chHHHHHHHHHHHHHHhC---C-----ccCcEEe-----EEE
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY----LY-E--------PRWVAAMSVAARVSQEMG---V-----KLGHEVG-----YSI 132 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~----ll-~--------P~r~~a~~~a~~va~~~~---~-----~~g~~vg-----y~v 132 (582)
..+..++.+|=|.|||+.+-.+ +. . |+.-.+.++.+++..-+. . ..+..+. ..+
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I 265 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDENL 265 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeEE
Confidence 4456788899999999765432 22 1 776677777666544332 1 1111110 011
Q ss_pred eecccCC---CCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCCh
Q 037717 133 RFEDCTS---DKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDA 208 (582)
Q Consensus 133 ~~~~~~~---~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~ 208 (582)
++..... ..+.+.|++.+ .+.. -.+++++|+|||+.- ..+.+..++--+.. .+-++|++|-+-+.
T Consensus 266 ~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI--~~~~l~aIlP~l~~--~~~k~IiISS~~~~ 334 (752)
T PHA03333 266 EYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFV--NPGALLSVLPLMAV--KGTKQIHISSPVDA 334 (752)
T ss_pred EEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccC--CHHHHHHHHHHHcc--CCCceEEEeCCCCc
Confidence 2211111 11456665433 1111 246799999999843 33555555554433 36788999998888
Q ss_pred HHHHhhhCC
Q 037717 209 EKFSDYFGS 217 (582)
Q Consensus 209 ~~~~~~f~~ 217 (582)
+.+..++++
T Consensus 335 ~s~tS~L~n 343 (752)
T PHA03333 335 DSWISRVGE 343 (752)
T ss_pred chHHHHhhh
Confidence 888777754
No 474
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.69 E-value=0.8 Score=52.62 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=66.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCC-CccccccCC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNI-AETSLTIDG 336 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~i-ae~gidIp~ 336 (582)
.+.+++|.+||+.-+...++.+.+.+..+ ++.+..+||+++..+|..+++...+|...|||+|.. +...+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPL-----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhc-----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 35689999999999999999888766432 477999999999999999999999999999999973 444567888
Q ss_pred eeEEE
Q 037717 337 IKYVI 341 (582)
Q Consensus 337 v~~VI 341 (582)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88777
No 475
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.69 E-value=0.92 Score=47.35 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
-+.+.+...+....++++|||+||.. +....=++||.+-.-.++..+|+.|.
T Consensus 119 ~l~~~~~~~~~~~~~kV~iI~~ae~m--~~~AaNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 119 ALLDFCGVGTHRGGARVVVLYPAEAL--NVAAANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred HHHHHhccCCccCCceEEEEechhhc--CHHHHHHHHHHhcCCCcCcEEEEEEC
Confidence 34455555566788999999999943 33344455665433223444454443
No 476
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.65 E-value=0.26 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=21.2
Q ss_pred HHhCCCeEEEECCCCCchhchHhhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
.+..++.++++||||||||..+-.++
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHHcCCcEEEECCCCCchhHHHHhhh
Confidence 35678899999999999997775544
No 477
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.64 E-value=1.3 Score=51.23 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..++++.||+|+|||+.+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 567899999999999654
No 478
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.62 E-value=0.14 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.3
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++.+.+.||.||||||++-
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVN 39 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999999883
No 479
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.14 Score=51.13 Aligned_cols=43 Identities=28% Similarity=0.511 Sum_probs=26.8
Q ss_pred chHHHHHHHhcCCCC--hHHHHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 52 STLEMLQEERKTLPI--YPFWEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi--~~~~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+++.+. -.||+ ..+-++. -+..-+-||+.|++|+|||.++
T Consensus 192 ~QiQEiKEs-vELPLthPE~Yeem--GikpPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 192 SQIQEIKES-VELPLTHPEYYEEM--GIKPPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred HHHHHHHHh-hcCCCCCHHHHHHc--CCCCCCeeEEeCCCCCchhHHH
Confidence 445555443 34565 3333333 3556677999999999999443
No 480
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.45 E-value=1 Score=42.64 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc---------CC-CCccEEEECh
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC---------TS-DKTVLKYMTD 149 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~---------~~-~~t~I~~~T~ 149 (582)
++..+++||-.||||+-+.+. .+-.++.+..+ +.+.-..|+. .. ...-+.+-.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r-------------~~~~~~~g~~v---~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~ 67 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRR-------------ARRYKEAGMKV---LVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSD 67 (201)
T ss_pred EEEEEEEccCcCcchHHHHHH-------------HHHHHHcCCeE---EEEecccccccccceeeeccCCcccceecCCh
Confidence 456789999999999755332 11123333221 1222222221 11 1123445556
Q ss_pred HHHHHHHHcCCCCCCCCceEeecccCCC
Q 037717 150 CMLLREIVIEPSLESYSVLIVDEAQERT 177 (582)
Q Consensus 150 g~Ll~~l~~~~~l~~~~~vViDE~HeR~ 177 (582)
.-+...+.......++++|.||||+-.+
T Consensus 68 ~~i~~~i~~~~~~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 68 TDIFDEIAALHEKPPVDCVLIDEAQFFD 95 (201)
T ss_pred HHHHHHHHhcccCCCcCEEEEehhHhCC
Confidence 6666777655544458999999999433
No 481
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.42 E-value=0.78 Score=51.47 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.7
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.|..++++-++||.||||||.+-..
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL 514 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLL 514 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999999988655
No 482
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=90.38 E-value=0.7 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
++.|+.+.|+|++||||||++-..
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL 386 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLL 386 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999887654
No 483
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=90.36 E-value=0.73 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.5
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.|+|++||||||++-.+
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll 389 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLL 389 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987655
No 484
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.34 E-value=1.1 Score=52.10 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=13.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
+++++||||+|||+.+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5789999999999543
No 485
>PRK08233 hypothetical protein; Provisional
Probab=90.34 E-value=0.18 Score=47.24 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.4
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..++.|.|++||||||+.
T Consensus 3 ~~iI~I~G~~GsGKtTla 20 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLT 20 (182)
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 357888999999999876
No 486
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=90.32 E-value=0.37 Score=53.06 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~ 118 (582)
+...|..+.+++.++...+|.||+|+|||.....+++. |.-+|+-++|+.+-+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 56678999999999999999999999999554444332 889999888887653
No 487
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=1.4 Score=49.38 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.++++.||.|||||+++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~ 448 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLV 448 (952)
T ss_pred ccccccEEEeCCCCCCHhHHH
Confidence 667888999999999999654
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.27 E-value=0.19 Score=47.15 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=15.1
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.++|+||+||||||++
T Consensus 2 ~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLL 18 (179)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999776
No 489
>PLN02165 adenylate isopentenyltransferase
Probab=90.19 E-value=0.17 Score=52.16 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=16.5
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+.+++|+||||||||++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA 60 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLS 60 (334)
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 45678999999999999553
No 490
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.18 E-value=0.78 Score=47.77 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 153 LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 153 l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
...+...+....+.++||||+|.-+. +..-.++|.+-.-.++..+|+
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~~~~--~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADKMTA--SAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhhhCH--HHHHHHHHHhcCCCCCceEEE
Confidence 33444455678899999999994432 233334444322223344454
No 491
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.16 E-value=0.15 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.|+|||||||++-..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l 50 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLL 50 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999987543
No 492
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.16 E-value=0.89 Score=51.09 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=20.7
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.++|||||||||.+-..
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 678899999999999999887554
No 493
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=90.10 E-value=0.18 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.9
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.++||.||||||++-
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 4578999999999999999887
No 494
>PRK13764 ATPase; Provisional
Probab=90.09 E-value=0.22 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.6
Q ss_pred HHHHH-hCCCeEEEECCCCCchhchH
Q 037717 73 LLQAV-SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i-~~~~~viv~a~TGSGKTt~i 97 (582)
+++.+ ..+.+++|+|||||||||.+
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHH
Confidence 44444 45678999999999999876
No 495
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.06 E-value=1.9 Score=46.08 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCC-eEEEECCCCCchhchH
Q 037717 68 PFWEELLQAVSGYP-VLAIVGETGSGKTTQI 97 (582)
Q Consensus 68 ~~~~~il~~i~~~~-~viv~a~TGSGKTt~i 97 (582)
.+..++++.+.... .++|.||=++||||.+
T Consensus 24 ~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll 54 (398)
T COG1373 24 KLLPRLIKKLDLRPFIILILGPRQVGKTTLL 54 (398)
T ss_pred hhhHHHHhhcccCCcEEEEECCccccHHHHH
Confidence 55666777777777 8999999999999887
No 496
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.37 Score=49.63 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=59.7
Q ss_pred CCCChHHHHHHHHHH--hCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCC
Q 037717 63 TLPIYPFWEELLQAV--SGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSD 140 (582)
Q Consensus 63 ~lPi~~~~~~il~~i--~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~ 140 (582)
.||+- +.++.+.+ ..-+=|++-||+|+|||.++ +.||...+..+=..+|-..- ..-..+
T Consensus 168 ELPL~--~PElF~~~GI~PPKGVLLYGPPGTGKTLLA----------------kAVA~~T~AtFIrvvgSElV-qKYiGE 228 (406)
T COG1222 168 ELPLK--NPELFEELGIDPPKGVLLYGPPGTGKTLLA----------------KAVANQTDATFIRVVGSELV-QKYIGE 228 (406)
T ss_pred ccccc--CHHHHHHcCCCCCCceEeeCCCCCcHHHHH----------------HHHHhccCceEEEeccHHHH-HHHhcc
Confidence 46653 34455543 45567999999999999443 44454444332111110000 000011
Q ss_pred CccEEEEChHHHHHHHHcCCCCCCCCceEeeccc----CC-----CcchhH---HHHHHHHHHh--hCCCceEEEecccC
Q 037717 141 KTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQ----ER-----TLSTDN---LFGLLKDLIN--YRPDLKLLISSATL 206 (582)
Q Consensus 141 ~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~H----eR-----~~~~d~---ll~~lk~~~~--~~~~~kii~~SAT~ 206 (582)
--+|.|.+..-.--..-+.|.|||++ .| +-+.++ ++.+|.++-. .+.++|+|+.+--+
T Consensus 229 --------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 229 --------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred --------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 12455555433333455899999999 12 222222 4444444322 34688999855433
No 497
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.02 E-value=0.18 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.9
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++++.+.||.||||||.+
T Consensus 30 i~~~~VTAlIGPSGcGKST~L 50 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLL 50 (253)
T ss_pred ccCCceEEEECCCCcCHHHHH
Confidence 457899999999999999887
No 498
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.99 E-value=0.2 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.6
Q ss_pred HHhCCCeEEEECCCCCchhchHhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+..++.+++.||.||||||++-.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl 50 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNL 50 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHH
Confidence 357899999999999999988744
No 499
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=89.88 E-value=1.2 Score=45.82 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.3
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++++.+.||.||||||++-.+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l 39 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRML 39 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999987544
No 500
>PF12846 AAA_10: AAA-like domain
Probab=89.88 E-value=0.18 Score=51.18 Aligned_cols=19 Identities=53% Similarity=0.737 Sum_probs=16.2
Q ss_pred CCeEEEECCCCCchhchHh
Q 037717 80 YPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip 98 (582)
|.+++|+|+||||||+.+-
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5679999999999997763
Done!