Query 037717
Match_columns 582
No_of_seqs 448 out of 2819
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 4.1E-93 1.4E-97 812.1 50.9 528 49-578 78-636 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 3.7E-58 1.3E-62 524.7 32.0 509 51-572 16-628 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-57 7.5E-62 517.0 34.0 488 65-571 25-606 (702)
4 2zj8_A DNA helicase, putative 100.0 3.6E-55 1.2E-59 500.2 24.5 498 51-568 9-613 (720)
5 4f92_B U5 small nuclear ribonu 100.0 1.9E-40 6.4E-45 403.2 36.3 447 53-508 915-1466(1724)
6 4f92_B U5 small nuclear ribonu 100.0 3.9E-40 1.3E-44 400.4 30.9 434 66-509 80-636 (1724)
7 3l9o_A ATP-dependent RNA helic 100.0 5.8E-40 2E-44 386.3 20.6 318 60-394 179-599 (1108)
8 3o8b_A HCV NS3 protease/helica 100.0 2.7E-40 9.2E-45 365.8 15.9 298 56-396 208-518 (666)
9 3eiq_A Eukaryotic initiation f 100.0 5.2E-39 1.8E-43 342.1 18.2 314 51-396 48-391 (414)
10 3fht_A ATP-dependent RNA helic 100.0 1.3E-37 4.5E-42 330.8 27.2 319 52-394 34-381 (412)
11 3pey_A ATP-dependent RNA helic 100.0 2.2E-37 7.6E-42 326.8 27.2 317 53-394 15-358 (395)
12 2z83_A Helicase/nucleoside tri 100.0 3.9E-38 1.3E-42 340.7 18.9 281 73-392 14-313 (459)
13 2jlq_A Serine protease subunit 100.0 1.9E-38 6.5E-43 342.5 15.5 288 62-391 4-310 (451)
14 4a4z_A Antiviral helicase SKI2 100.0 2.1E-38 7.3E-43 370.0 17.0 359 62-435 36-549 (997)
15 2db3_A ATP-dependent RNA helic 100.0 4.3E-36 1.5E-40 322.7 32.9 305 54-393 67-408 (434)
16 2xgj_A ATP-dependent RNA helic 100.0 7.5E-37 2.6E-41 357.0 23.5 310 61-392 82-499 (1010)
17 1hv8_A Putative ATP-dependent 100.0 3.1E-36 1E-40 314.8 24.7 310 52-396 15-349 (367)
18 2whx_A Serine protease/ntpase/ 100.0 2.5E-37 8.5E-42 344.4 16.9 289 60-390 169-476 (618)
19 2j0s_A ATP-dependent RNA helic 100.0 7.8E-36 2.7E-40 317.7 26.1 309 54-396 48-387 (410)
20 1xti_A Probable ATP-dependent 100.0 4.7E-35 1.6E-39 309.1 31.0 310 54-395 19-360 (391)
21 1s2m_A Putative ATP-dependent 100.0 3.7E-35 1.3E-39 311.2 30.3 309 54-396 32-369 (400)
22 3fmp_B ATP-dependent RNA helic 100.0 5.7E-37 1.9E-41 333.7 16.7 319 52-394 101-448 (479)
23 2v1x_A ATP-dependent DNA helic 100.0 1.1E-35 3.7E-40 330.1 26.7 318 49-396 27-378 (591)
24 2i4i_A ATP-dependent RNA helic 100.0 8.5E-36 2.9E-40 317.7 24.1 312 51-396 23-387 (417)
25 3rc3_A ATP-dependent RNA helic 100.0 5.2E-36 1.8E-40 335.1 16.6 353 77-477 152-532 (677)
26 3i5x_A ATP-dependent RNA helic 100.0 1.2E-34 4.1E-39 321.6 24.5 313 59-395 88-452 (563)
27 1oyw_A RECQ helicase, ATP-depe 100.0 6.4E-35 2.2E-39 320.3 22.0 295 65-396 25-347 (523)
28 2z0m_A 337AA long hypothetical 100.0 9.5E-35 3.3E-39 300.1 21.9 294 57-390 8-321 (337)
29 1yks_A Genome polyprotein [con 100.0 5.7E-35 1.9E-39 314.1 18.7 276 76-390 4-297 (440)
30 1fuu_A Yeast initiation factor 100.0 1.2E-35 4E-40 313.9 12.4 314 51-396 29-370 (394)
31 2v6i_A RNA helicase; membrane, 100.0 1.3E-34 4.6E-39 310.5 19.8 272 79-390 1-288 (431)
32 3sqw_A ATP-dependent RNA helic 100.0 8.4E-34 2.9E-38 315.9 26.0 307 64-394 42-400 (579)
33 3fho_A ATP-dependent RNA helic 100.0 1.9E-35 6.5E-40 323.9 11.0 305 65-393 141-471 (508)
34 2ykg_A Probable ATP-dependent 100.0 1.1E-33 3.8E-38 321.6 25.1 307 63-394 11-518 (696)
35 2wv9_A Flavivirin protease NS2 100.0 2.2E-33 7.7E-38 314.6 19.6 277 75-390 236-531 (673)
36 3oiy_A Reverse gyrase helicase 100.0 1.7E-33 5.7E-38 300.5 17.1 297 52-391 8-364 (414)
37 1wp9_A ATP-dependent RNA helic 100.0 7.1E-33 2.4E-37 299.2 19.4 303 63-396 7-479 (494)
38 4a2p_A RIG-I, retinoic acid in 100.0 1.6E-32 5.5E-37 303.2 21.3 314 62-396 4-512 (556)
39 3i4u_A ATP-dependent RNA helic 100.0 1.7E-32 5.7E-37 273.5 17.8 157 421-579 5-162 (270)
40 3tbk_A RIG-I helicase domain; 100.0 5E-32 1.7E-36 298.8 23.1 311 63-395 2-510 (555)
41 4gl2_A Interferon-induced heli 100.0 2.2E-32 7.6E-37 311.1 16.0 309 61-391 3-518 (699)
42 4a2q_A RIG-I, retinoic acid in 100.0 1E-30 3.4E-35 301.4 22.4 313 63-395 246-752 (797)
43 2eyq_A TRCF, transcription-rep 100.0 1.5E-29 5.3E-34 299.4 25.6 290 63-393 601-923 (1151)
44 1gm5_A RECG; helicase, replica 100.0 1.2E-30 4.3E-35 295.9 13.8 290 62-390 365-695 (780)
45 4a2w_A RIG-I, retinoic acid in 100.0 1.9E-29 6.6E-34 294.3 24.2 313 62-395 245-752 (936)
46 4ddu_A Reverse gyrase; topoiso 100.0 4.4E-30 1.5E-34 302.3 14.3 264 57-347 70-388 (1104)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-29 4E-34 298.7 13.5 265 54-347 46-353 (1054)
48 2fwr_A DNA repair protein RAD2 100.0 2.8E-29 9.5E-34 272.4 13.2 285 63-395 91-457 (472)
49 3llm_A ATP-dependent RNA helic 100.0 1.4E-28 4.8E-33 242.3 16.5 170 52-223 48-235 (235)
50 2oca_A DAR protein, ATP-depend 100.0 1.5E-28 5.1E-33 269.3 12.9 290 63-390 111-453 (510)
51 1tf5_A Preprotein translocase 99.9 8.5E-26 2.9E-30 252.3 23.6 106 259-393 432-546 (844)
52 3h1t_A Type I site-specific re 99.9 3E-26 1E-30 255.5 17.5 289 64-382 177-545 (590)
53 2fsf_A Preprotein translocase 99.9 5.4E-25 1.9E-29 245.2 18.6 108 257-393 439-584 (853)
54 3eaq_A Heat resistant RNA depe 99.9 3.5E-25 1.2E-29 214.5 11.6 167 249-442 21-211 (212)
55 1nkt_A Preprotein translocase 99.9 1.1E-23 3.9E-28 234.8 21.2 295 63-393 109-618 (922)
56 3i32_A Heat resistant RNA depe 99.9 1.7E-24 5.7E-29 220.0 11.2 186 231-447 4-213 (300)
57 3dmq_A RNA polymerase-associat 99.9 3E-23 1E-27 242.5 15.5 121 248-394 492-617 (968)
58 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.6E-21 1.6E-25 223.0 18.8 293 64-383 270-695 (1038)
59 1z63_A Helicase of the SNF2/RA 99.9 1.8E-21 6.1E-26 212.5 13.9 113 258-396 340-457 (500)
60 3jux_A Protein translocase sub 99.8 5.6E-20 1.9E-24 201.1 22.8 163 197-393 410-588 (822)
61 2rb4_A ATP-dependent RNA helic 99.8 2.2E-19 7.5E-24 168.2 14.3 143 229-395 7-150 (175)
62 2hjv_A ATP-dependent RNA helic 99.8 3E-19 1E-23 165.2 13.5 135 230-395 10-145 (163)
63 1fuk_A Eukaryotic initiation f 99.8 1.6E-19 5.6E-24 167.4 10.0 117 252-395 23-140 (165)
64 2d7d_A Uvrabc system protein B 99.8 4.1E-19 1.4E-23 199.5 14.1 115 258-394 444-558 (661)
65 1z3i_X Similar to RAD54-like; 99.8 4.6E-18 1.6E-22 190.9 22.4 112 258-396 415-532 (644)
66 1t5i_A C_terminal domain of A 99.8 4.7E-19 1.6E-23 165.5 12.0 134 229-393 5-139 (172)
67 1c4o_A DNA nucleotide excision 99.8 4.8E-19 1.6E-23 199.0 14.3 115 258-394 438-552 (664)
68 2jgn_A DBX, DDX3, ATP-dependen 99.8 8.8E-19 3E-23 165.6 11.5 136 229-395 19-156 (185)
69 3mwy_W Chromo domain-containin 99.8 2.7E-18 9.1E-23 197.5 14.4 112 258-396 571-688 (800)
70 2p6n_A ATP-dependent RNA helic 99.7 2.5E-18 8.4E-23 163.4 10.0 107 259-392 54-161 (191)
71 3ber_A Probable ATP-dependent 99.7 1.4E-17 4.6E-22 165.1 14.5 170 50-221 50-244 (249)
72 3iuy_A Probable ATP-dependent 99.7 3.3E-17 1.1E-21 159.8 15.7 161 58-221 35-225 (228)
73 2yjt_D ATP-dependent RNA helic 99.6 2.6E-19 8.8E-24 166.9 0.0 118 251-395 22-140 (170)
74 1vec_A ATP-dependent RNA helic 99.7 7.5E-17 2.6E-21 154.4 16.9 166 53-220 13-203 (206)
75 1qde_A EIF4A, translation init 99.7 5.3E-17 1.8E-21 157.7 15.4 173 52-226 23-219 (224)
76 1q0u_A Bstdead; DEAD protein, 99.7 5.3E-17 1.8E-21 157.3 14.0 168 52-221 13-208 (219)
77 3bor_A Human initiation factor 99.7 8.3E-17 2.8E-21 158.1 15.2 165 52-221 39-231 (237)
78 2gxq_A Heat resistant RNA depe 99.7 1.3E-16 4.6E-21 152.7 15.2 164 53-221 11-202 (207)
79 3fmo_B ATP-dependent RNA helic 99.7 1.2E-16 4.2E-21 162.6 15.7 168 52-220 101-293 (300)
80 2pl3_A Probable ATP-dependent 99.7 2.3E-16 7.9E-21 154.6 16.8 166 52-220 34-228 (236)
81 2oxc_A Probable ATP-dependent 99.7 1.5E-16 5.3E-21 155.4 14.0 156 52-208 33-210 (230)
82 3dkp_A Probable ATP-dependent 99.7 3.9E-16 1.3E-20 153.9 16.0 166 55-221 41-237 (245)
83 3fe2_A Probable ATP-dependent 99.7 1.5E-16 5.2E-21 156.7 12.6 165 54-220 40-233 (242)
84 1t6n_A Probable ATP-dependent 99.7 8.1E-16 2.8E-20 148.9 17.0 166 54-220 25-216 (220)
85 3ly5_A ATP-dependent RNA helic 99.7 2E-16 6.9E-21 157.8 12.5 164 54-220 65-259 (262)
86 1wrb_A DJVLGB; RNA helicase, D 99.6 1.5E-15 5.2E-20 150.4 12.6 155 64-221 44-236 (253)
87 3b6e_A Interferon-induced heli 99.6 9.3E-15 3.2E-19 140.4 10.5 143 60-205 28-216 (216)
88 2ipc_A Preprotein translocase 99.5 2.7E-13 9.2E-18 151.3 21.4 108 64-174 78-212 (997)
89 2vl7_A XPD; helicase, unknown 99.5 4.1E-14 1.4E-18 155.6 9.7 125 247-388 373-518 (540)
90 1rif_A DAR protein, DNA helica 99.4 2.6E-13 8.9E-18 136.6 7.3 134 64-206 112-262 (282)
91 2fz4_A DNA repair protein RAD2 99.3 5E-12 1.7E-16 123.9 11.5 128 64-206 92-228 (237)
92 1z5z_A Helicase of the SNF2/RA 99.3 1.8E-12 6E-17 129.7 7.1 113 258-396 111-228 (271)
93 3crv_A XPD/RAD3 related DNA he 99.2 3.4E-09 1.2E-13 116.7 25.6 173 197-388 316-528 (551)
94 1w36_D RECD, exodeoxyribonucle 97.7 4.7E-05 1.6E-09 84.5 7.8 130 67-205 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 97.4 0.00021 7E-09 78.6 8.3 51 64-114 188-250 (574)
96 3ec2_A DNA replication protein 97.2 0.0015 5.3E-08 60.0 10.0 19 79-97 37-55 (180)
97 2w58_A DNAI, primosome compone 97.1 0.00069 2.4E-08 63.5 6.6 17 81-97 55-71 (202)
98 3upu_A ATP-dependent DNA helic 97.0 0.00099 3.4E-08 71.2 7.7 51 66-116 26-94 (459)
99 2b8t_A Thymidine kinase; deoxy 96.8 0.0071 2.4E-07 57.9 11.1 105 78-204 10-124 (223)
100 2kjq_A DNAA-related protein; s 96.8 0.003 1E-07 56.5 7.7 19 79-97 35-53 (149)
101 3te6_A Regulatory protein SIR3 96.8 0.0057 2E-07 61.8 10.5 44 163-207 131-174 (318)
102 1njg_A DNA polymerase III subu 96.8 0.0027 9.4E-08 60.2 7.9 26 72-97 34-62 (250)
103 2chg_A Replication factor C sm 96.7 0.0074 2.5E-07 56.4 10.2 26 72-97 28-55 (226)
104 3kl4_A SRP54, signal recogniti 96.6 0.0079 2.7E-07 63.3 10.9 110 80-206 97-223 (433)
105 3n70_A Transport activator; si 96.6 0.012 4.2E-07 51.9 10.5 25 73-97 17-41 (145)
106 2qgz_A Helicase loader, putati 96.6 0.0032 1.1E-07 63.5 7.2 18 80-97 152-169 (308)
107 3bos_A Putative DNA replicatio 96.6 0.0015 5.1E-08 62.5 4.6 19 79-97 51-69 (242)
108 4a15_A XPD helicase, ATP-depen 96.6 0.0034 1.2E-07 69.5 8.0 174 198-388 377-581 (620)
109 1jr3_A DNA polymerase III subu 96.5 0.0071 2.4E-07 62.1 9.5 26 151-176 106-131 (373)
110 1a5t_A Delta prime, HOLB; zinc 96.4 0.0052 1.8E-07 62.6 7.9 51 152-204 96-146 (334)
111 2orw_A Thymidine kinase; TMTK, 96.4 0.0049 1.7E-07 57.1 6.8 21 79-99 2-22 (184)
112 3syl_A Protein CBBX; photosynt 96.4 0.0064 2.2E-07 60.8 8.2 18 80-97 67-84 (309)
113 3lfu_A DNA helicase II; SF1 he 96.4 0.045 1.6E-06 60.7 15.9 55 66-122 10-80 (647)
114 3h4m_A Proteasome-activating n 96.3 0.0039 1.3E-07 61.6 5.5 20 78-97 49-68 (285)
115 1d2n_A N-ethylmaleimide-sensit 96.1 0.0098 3.4E-07 58.4 7.6 51 163-213 123-182 (272)
116 3b9p_A CG5977-PA, isoform A; A 96.1 0.0064 2.2E-07 60.5 6.1 19 79-97 53-71 (297)
117 3vfd_A Spastin; ATPase, microt 96.1 0.01 3.6E-07 61.7 7.9 18 80-97 148-165 (389)
118 1l8q_A Chromosomal replication 96.1 0.0065 2.2E-07 61.4 6.1 18 80-97 37-54 (324)
119 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0045 1.5E-07 60.2 4.3 20 78-97 37-56 (262)
120 3u61_B DNA polymerase accessor 95.9 0.03 1E-06 56.3 10.4 17 81-97 49-65 (324)
121 1sxj_A Activator 1 95 kDa subu 95.9 0.012 4E-07 63.8 7.5 44 163-207 147-190 (516)
122 3pfi_A Holliday junction ATP-d 95.8 0.025 8.6E-07 57.3 9.3 64 81-177 56-119 (338)
123 3co5_A Putative two-component 95.8 0.0045 1.5E-07 54.7 3.2 25 73-97 20-44 (143)
124 1sxj_E Activator 1 40 kDa subu 95.8 0.02 7E-07 58.3 8.6 43 162-206 132-174 (354)
125 1sxj_C Activator 1 40 kDa subu 95.8 0.017 5.7E-07 58.9 7.8 26 72-97 36-63 (340)
126 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.013 4.3E-07 59.4 6.7 18 80-97 45-62 (322)
127 2qp9_X Vacuolar protein sortin 95.8 0.0091 3.1E-07 61.4 5.7 18 80-97 84-101 (355)
128 3cf0_A Transitional endoplasmi 95.8 0.065 2.2E-06 53.5 11.8 20 78-97 47-66 (301)
129 3dm5_A SRP54, signal recogniti 95.7 0.012 4E-07 62.1 6.2 110 80-206 100-224 (443)
130 1iqp_A RFCS; clamp loader, ext 95.6 0.019 6.7E-07 57.4 7.5 25 73-97 37-63 (327)
131 1hqc_A RUVB; extended AAA-ATPa 95.6 0.031 1E-06 56.1 8.6 18 80-97 38-55 (324)
132 2z4s_A Chromosomal replication 95.5 0.028 9.5E-07 59.5 8.6 18 80-97 130-147 (440)
133 2px0_A Flagellar biosynthesis 95.5 0.021 7.1E-07 57.1 7.2 52 162-214 180-232 (296)
134 1vma_A Cell division protein F 95.5 0.032 1.1E-06 56.0 8.5 110 79-206 103-234 (306)
135 3eie_A Vacuolar protein sortin 95.5 0.022 7.5E-07 57.5 7.4 18 80-97 51-68 (322)
136 1xx6_A Thymidine kinase; NESG, 95.5 0.041 1.4E-06 51.1 8.7 21 79-99 7-27 (191)
137 3t15_A Ribulose bisphosphate c 95.5 0.033 1.1E-06 55.5 8.3 18 80-97 36-53 (293)
138 2gno_A DNA polymerase III, gam 95.4 0.064 2.2E-06 53.8 10.2 50 151-203 69-119 (305)
139 1sxj_D Activator 1 41 kDa subu 95.3 0.017 6E-07 58.6 6.0 27 71-97 47-75 (353)
140 2bjv_A PSP operon transcriptio 95.3 0.083 2.8E-06 51.4 10.5 21 77-97 26-46 (265)
141 1fnn_A CDC6P, cell division co 95.3 0.048 1.7E-06 56.0 9.2 43 428-470 328-374 (389)
142 3d8b_A Fidgetin-like protein 1 95.3 0.015 5.1E-07 59.8 5.2 19 79-97 116-134 (357)
143 1lv7_A FTSH; alpha/beta domain 95.3 0.024 8.3E-07 55.0 6.5 18 80-97 45-62 (257)
144 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.035 1.2E-06 56.4 7.6 26 75-100 166-191 (330)
145 3vkw_A Replicase large subunit 95.2 0.029 1E-06 58.9 7.1 101 79-205 160-269 (446)
146 4b4t_J 26S protease regulatory 95.1 0.023 7.8E-07 59.1 6.1 103 79-206 181-295 (405)
147 3pvs_A Replication-associated 95.1 0.011 3.9E-07 62.6 3.7 23 75-97 43-67 (447)
148 3cpe_A Terminase, DNA packagin 95.0 0.18 6.2E-06 55.4 13.4 140 64-215 162-323 (592)
149 1sxj_B Activator 1 37 kDa subu 95.0 0.042 1.4E-06 54.9 7.5 26 72-97 32-59 (323)
150 4b3f_X DNA-binding protein smu 94.9 0.027 9.2E-07 62.7 6.3 53 66-118 190-255 (646)
151 2zan_A Vacuolar protein sortin 94.9 0.028 9.5E-07 59.6 6.0 18 80-97 167-184 (444)
152 2v1u_A Cell division control p 94.9 0.028 9.4E-07 57.7 5.9 47 428-474 328-376 (387)
153 1ye8_A Protein THEP1, hypothet 94.8 0.22 7.6E-06 45.5 11.4 17 82-98 2-18 (178)
154 2o0j_A Terminase, DNA packagin 94.8 0.25 8.6E-06 51.0 13.0 141 63-215 161-323 (385)
155 4b4t_H 26S protease regulatory 94.7 0.041 1.4E-06 58.0 6.8 104 78-206 241-356 (467)
156 2chq_A Replication factor C sm 94.6 0.047 1.6E-06 54.4 6.8 16 82-97 40-55 (319)
157 1um8_A ATP-dependent CLP prote 94.5 0.11 3.6E-06 53.6 9.2 19 79-97 71-89 (376)
158 3b85_A Phosphate starvation-in 94.4 0.025 8.6E-07 53.4 4.0 34 65-98 7-40 (208)
159 4b4t_M 26S protease regulatory 94.4 0.026 8.8E-07 59.4 4.4 70 80-174 215-284 (434)
160 2qby_A CDC6 homolog 1, cell di 94.4 0.04 1.4E-06 56.4 5.6 45 428-472 325-371 (386)
161 4b4t_K 26S protease regulatory 94.3 0.06 2.1E-06 56.5 6.9 71 79-174 205-275 (428)
162 4b4t_I 26S protease regulatory 94.3 0.059 2E-06 56.3 6.7 70 80-174 216-285 (437)
163 2ce7_A Cell division protein F 94.2 0.041 1.4E-06 58.6 5.3 17 81-97 50-66 (476)
164 4a15_A XPD helicase, ATP-depen 94.1 0.047 1.6E-06 60.4 5.9 51 67-117 5-72 (620)
165 4b4t_L 26S protease subunit RP 94.1 0.053 1.8E-06 57.0 6.0 70 80-174 215-284 (437)
166 4fcw_A Chaperone protein CLPB; 94.1 0.055 1.9E-06 53.8 5.9 17 81-97 48-64 (311)
167 3pxi_A Negative regulator of g 94.1 0.2 7E-06 56.7 11.2 16 82-97 523-538 (758)
168 1ls1_A Signal recognition part 93.9 0.12 4.2E-06 51.4 8.0 22 79-100 97-118 (295)
169 3k1j_A LON protease, ATP-depen 93.9 0.18 6.3E-06 55.5 10.0 27 71-97 51-77 (604)
170 1kgd_A CASK, peripheral plasma 93.7 0.027 9.2E-07 51.6 2.5 19 79-97 4-22 (180)
171 2gk6_A Regulator of nonsense t 93.7 0.074 2.5E-06 58.9 6.4 53 66-118 181-246 (624)
172 2xzl_A ATP-dependent helicase 93.5 0.083 2.8E-06 60.1 6.5 53 66-118 361-426 (802)
173 2fna_A Conserved hypothetical 93.3 0.32 1.1E-05 48.8 10.2 20 81-100 31-50 (357)
174 3hu3_A Transitional endoplasmi 93.3 0.077 2.7E-06 56.8 5.6 19 79-97 237-255 (489)
175 3tr0_A Guanylate kinase, GMP k 93.3 0.033 1.1E-06 51.8 2.3 21 77-97 4-24 (205)
176 2j9r_A Thymidine kinase; TK1, 93.2 0.061 2.1E-06 50.8 4.1 22 79-100 27-48 (214)
177 2qor_A Guanylate kinase; phosp 93.2 0.12 4.2E-06 48.1 6.2 65 77-157 9-74 (204)
178 1ojl_A Transcriptional regulat 93.2 0.33 1.1E-05 48.4 9.7 20 78-97 23-42 (304)
179 2eyu_A Twitching motility prot 93.0 0.03 1E-06 54.8 1.8 22 77-98 22-43 (261)
180 3e70_C DPA, signal recognition 93.0 0.14 4.6E-06 51.9 6.6 23 78-100 127-149 (328)
181 2zpa_A Uncharacterized protein 93.0 0.06 2E-06 59.5 4.1 101 67-206 177-288 (671)
182 3hgt_A HDA1 complex subunit 3; 92.9 0.61 2.1E-05 46.7 11.0 111 258-399 124-244 (328)
183 2gza_A Type IV secretion syste 92.8 0.042 1.4E-06 56.5 2.5 25 75-99 170-194 (361)
184 3m6a_A ATP-dependent protease 92.8 0.062 2.1E-06 58.5 4.0 19 79-97 107-125 (543)
185 1ex7_A Guanylate kinase; subst 92.8 0.26 8.9E-06 45.4 7.6 64 81-160 2-66 (186)
186 2wjy_A Regulator of nonsense t 92.7 0.12 4.1E-06 58.8 6.4 53 66-118 357-422 (800)
187 4gp7_A Metallophosphoesterase; 92.7 0.029 1E-06 51.0 1.0 22 78-99 7-28 (171)
188 1znw_A Guanylate kinase, GMP k 92.7 0.046 1.6E-06 51.2 2.4 22 76-97 16-37 (207)
189 2j41_A Guanylate kinase; GMP, 92.6 0.047 1.6E-06 50.7 2.3 21 77-97 3-23 (207)
190 2oap_1 GSPE-2, type II secreti 92.5 0.064 2.2E-06 57.8 3.5 26 73-98 253-278 (511)
191 3cf2_A TER ATPase, transitiona 92.4 0.027 9.2E-07 63.8 0.4 70 80-174 238-307 (806)
192 3tau_A Guanylate kinase, GMP k 92.3 0.061 2.1E-06 50.5 2.8 20 78-97 6-25 (208)
193 1lvg_A Guanylate kinase, GMP k 92.3 0.053 1.8E-06 50.5 2.2 19 79-97 3-21 (198)
194 3e2i_A Thymidine kinase; Zn-bi 92.2 0.23 7.9E-06 46.8 6.5 20 78-97 26-45 (219)
195 3im1_A Protein SNU246, PRE-mRN 92.1 0.8 2.7E-05 46.2 10.9 93 446-538 1-101 (328)
196 1z6g_A Guanylate kinase; struc 92.0 0.062 2.1E-06 50.9 2.5 21 77-97 20-40 (218)
197 2dhr_A FTSH; AAA+ protein, hex 92.0 0.11 3.6E-06 55.8 4.4 17 81-97 65-81 (499)
198 3ney_A 55 kDa erythrocyte memb 91.9 0.076 2.6E-06 49.6 2.8 19 79-97 18-36 (197)
199 1zp6_A Hypothetical protein AT 91.8 0.041 1.4E-06 50.5 0.9 21 77-97 6-26 (191)
200 1p9r_A General secretion pathw 91.8 0.11 3.9E-06 54.3 4.4 27 71-97 156-184 (418)
201 2orv_A Thymidine kinase; TP4A 91.7 0.67 2.3E-05 44.1 9.1 21 79-99 18-38 (234)
202 3lnc_A Guanylate kinase, GMP k 91.6 0.053 1.8E-06 51.7 1.4 21 77-97 24-44 (231)
203 3a00_A Guanylate kinase, GMP k 91.5 0.077 2.6E-06 48.7 2.3 18 80-97 1-18 (186)
204 3jvv_A Twitching mobility prot 91.4 0.076 2.6E-06 54.5 2.4 21 77-97 120-140 (356)
205 1ypw_A Transitional endoplasmi 91.3 0.072 2.5E-06 60.8 2.3 20 78-97 236-255 (806)
206 1s96_A Guanylate kinase, GMP k 91.2 0.086 2.9E-06 50.1 2.5 22 76-97 12-33 (219)
207 2yhs_A FTSY, cell division pro 91.2 0.41 1.4E-05 51.0 7.8 22 79-100 292-313 (503)
208 2ewv_A Twitching motility prot 91.0 0.068 2.3E-06 55.2 1.7 23 77-99 133-155 (372)
209 3vaa_A Shikimate kinase, SK; s 90.8 0.11 3.7E-06 48.2 2.7 21 77-97 22-42 (199)
210 1jbk_A CLPB protein; beta barr 90.8 0.2 6.8E-06 45.1 4.4 26 72-97 33-60 (195)
211 3tif_A Uncharacterized ABC tra 90.8 0.073 2.5E-06 51.1 1.5 23 77-99 28-50 (235)
212 1zu4_A FTSY; GTPase, signal re 90.7 0.65 2.2E-05 46.7 8.6 21 79-99 104-124 (320)
213 1w4r_A Thymidine kinase; type 90.7 0.13 4.4E-06 47.8 3.0 21 79-99 19-39 (195)
214 1j8m_F SRP54, signal recogniti 90.6 0.44 1.5E-05 47.4 7.2 110 80-206 98-224 (297)
215 3lw7_A Adenylate kinase relate 90.5 0.11 3.7E-06 46.4 2.3 18 81-98 2-19 (179)
216 1zuh_A Shikimate kinase; alpha 90.4 0.17 5.9E-06 45.3 3.6 17 81-97 8-24 (168)
217 2ffh_A Protein (FFH); SRP54, s 90.3 0.72 2.5E-05 48.2 8.7 22 79-100 97-118 (425)
218 3c8u_A Fructokinase; YP_612366 90.3 0.097 3.3E-06 49.0 1.8 20 78-97 20-39 (208)
219 4eun_A Thermoresistant glucoki 90.2 0.12 4.2E-06 47.9 2.5 20 78-97 27-46 (200)
220 1r6b_X CLPA protein; AAA+, N-t 90.1 0.74 2.5E-05 52.0 9.3 16 82-97 490-505 (758)
221 2ehv_A Hypothetical protein PH 90.1 0.098 3.4E-06 50.0 1.8 24 76-99 26-49 (251)
222 3exa_A TRNA delta(2)-isopenten 90.1 0.1 3.6E-06 52.2 2.0 18 80-97 3-20 (322)
223 3umf_A Adenylate kinase; rossm 90.1 0.11 3.6E-06 49.4 1.9 21 77-97 26-46 (217)
224 1kag_A SKI, shikimate kinase I 89.9 0.12 4.2E-06 46.4 2.1 18 80-97 4-21 (173)
225 2p65_A Hypothetical protein PF 89.9 0.17 5.9E-06 45.5 3.2 18 80-97 43-60 (187)
226 2cbz_A Multidrug resistance-as 89.9 0.097 3.3E-06 50.3 1.5 22 77-98 28-49 (237)
227 1kht_A Adenylate kinase; phosp 89.7 0.15 5.2E-06 46.4 2.6 18 80-97 3-20 (192)
228 1qvr_A CLPB protein; coiled co 89.7 0.48 1.7E-05 54.4 7.4 18 80-97 191-208 (854)
229 1qhx_A CPT, protein (chloramph 89.6 0.14 4.9E-06 46.1 2.3 18 80-97 3-20 (178)
230 3a8t_A Adenylate isopentenyltr 89.5 0.13 4.3E-06 52.2 2.0 19 79-97 39-57 (339)
231 3trf_A Shikimate kinase, SK; a 89.5 0.16 5.4E-06 46.2 2.6 18 80-97 5-22 (185)
232 3gfo_A Cobalt import ATP-bindi 89.5 0.11 3.6E-06 51.3 1.4 23 77-99 31-53 (275)
233 2pcj_A ABC transporter, lipopr 89.4 0.1 3.5E-06 49.7 1.2 22 77-98 27-48 (224)
234 3cf2_A TER ATPase, transitiona 89.4 0.24 8.2E-06 56.1 4.4 101 81-206 512-624 (806)
235 1ly1_A Polynucleotide kinase; 89.3 0.14 4.8E-06 46.2 2.0 17 81-97 3-19 (181)
236 2v3c_C SRP54, signal recogniti 89.2 0.31 1.1E-05 51.2 4.9 19 81-99 100-118 (432)
237 1knq_A Gluconate kinase; ALFA/ 89.2 0.13 4.6E-06 46.3 1.9 19 79-97 7-25 (175)
238 1htw_A HI0065; nucleotide-bind 89.1 0.25 8.5E-06 44.3 3.5 20 78-97 31-50 (158)
239 3kb2_A SPBC2 prophage-derived 89.1 0.17 5.6E-06 45.3 2.4 16 82-97 3-18 (173)
240 1sgw_A Putative ABC transporte 89.1 0.11 3.8E-06 49.1 1.2 22 77-98 32-53 (214)
241 2ze6_A Isopentenyl transferase 89.0 0.16 5.5E-06 49.2 2.3 16 82-97 3-18 (253)
242 2pze_A Cystic fibrosis transme 89.0 0.12 4.2E-06 49.3 1.5 22 77-98 31-52 (229)
243 4a74_A DNA repair and recombin 88.9 0.1 3.6E-06 49.1 0.9 25 76-100 21-45 (231)
244 3foz_A TRNA delta(2)-isopenten 88.9 0.14 4.8E-06 51.2 1.8 17 81-97 11-27 (316)
245 1b0u_A Histidine permease; ABC 88.9 0.13 4.4E-06 50.3 1.5 22 77-98 29-50 (262)
246 1g6h_A High-affinity branched- 88.9 0.12 4.3E-06 50.2 1.4 21 77-97 30-50 (257)
247 3asz_A Uridine kinase; cytidin 88.8 0.13 4.6E-06 47.9 1.6 20 78-97 4-23 (211)
248 4g1u_C Hemin import ATP-bindin 88.8 0.13 4.4E-06 50.5 1.5 24 77-100 34-57 (266)
249 2ff7_A Alpha-hemolysin translo 88.8 0.13 4.3E-06 49.9 1.4 23 77-99 32-54 (247)
250 2c95_A Adenylate kinase 1; tra 88.8 0.21 7.2E-06 45.7 2.9 22 77-98 6-27 (196)
251 2ghi_A Transport protein; mult 88.7 0.13 4.5E-06 50.1 1.5 21 77-97 43-63 (260)
252 2bdt_A BH3686; alpha-beta prot 88.7 0.13 4.3E-06 47.2 1.3 17 81-97 3-19 (189)
253 1mv5_A LMRA, multidrug resista 88.6 0.12 4E-06 49.9 1.0 23 77-99 25-47 (243)
254 1ji0_A ABC transporter; ATP bi 88.6 0.13 4.6E-06 49.4 1.4 22 77-98 29-50 (240)
255 2qmh_A HPR kinase/phosphorylas 88.5 0.18 6.2E-06 47.0 2.2 19 79-97 33-51 (205)
256 1vpl_A ABC transporter, ATP-bi 88.4 0.14 4.9E-06 49.8 1.5 22 77-98 38-59 (256)
257 2olj_A Amino acid ABC transpor 88.4 0.14 4.9E-06 50.0 1.5 22 77-98 47-68 (263)
258 3uie_A Adenylyl-sulfate kinase 88.3 0.16 5.6E-06 47.0 1.8 21 77-97 22-42 (200)
259 2zu0_C Probable ATP-dependent 88.2 0.15 5.1E-06 50.0 1.5 21 77-97 43-63 (267)
260 3cm0_A Adenylate kinase; ATP-b 88.2 0.16 5.6E-06 46.1 1.7 20 79-98 3-22 (186)
261 2cvh_A DNA repair and recombin 88.2 0.17 5.8E-06 47.3 1.8 25 76-100 16-40 (220)
262 2w0m_A SSO2452; RECA, SSPF, un 88.2 0.16 5.6E-06 47.7 1.7 25 76-100 19-43 (235)
263 2d2e_A SUFC protein; ABC-ATPas 88.2 0.15 5E-06 49.5 1.4 21 77-97 26-46 (250)
264 2bwj_A Adenylate kinase 5; pho 88.1 0.25 8.4E-06 45.4 2.9 23 76-98 8-30 (199)
265 3sr0_A Adenylate kinase; phosp 88.1 0.2 6.9E-06 47.0 2.3 19 82-100 2-20 (206)
266 2v9p_A Replication protein E1; 88.0 0.18 6.3E-06 50.3 2.0 21 77-97 123-143 (305)
267 2ixe_A Antigen peptide transpo 88.0 0.16 5.4E-06 49.9 1.5 23 77-99 42-64 (271)
268 2v54_A DTMP kinase, thymidylat 87.9 0.24 8.3E-06 45.6 2.7 19 79-97 3-21 (204)
269 3iij_A Coilin-interacting nucl 87.9 0.22 7.7E-06 45.0 2.4 19 79-97 10-28 (180)
270 2yz2_A Putative ABC transporte 87.9 0.16 5.5E-06 49.7 1.5 22 77-98 30-51 (266)
271 3nh6_A ATP-binding cassette SU 87.9 0.14 4.7E-06 51.3 1.1 23 77-99 77-99 (306)
272 1zd8_A GTP:AMP phosphotransfer 87.8 0.21 7.3E-06 47.2 2.3 21 79-99 6-26 (227)
273 2ihy_A ABC transporter, ATP-bi 87.8 0.16 5.5E-06 50.1 1.5 22 77-98 44-65 (279)
274 2nq2_C Hypothetical ABC transp 87.7 0.16 5.6E-06 49.3 1.4 23 77-99 28-50 (253)
275 2qi9_C Vitamin B12 import ATP- 87.7 0.17 5.7E-06 49.1 1.5 22 77-98 23-44 (249)
276 1qvr_A CLPB protein; coiled co 87.7 0.59 2E-05 53.6 6.3 17 81-97 589-605 (854)
277 3t61_A Gluconokinase; PSI-biol 87.6 0.19 6.6E-06 46.5 1.8 17 81-97 19-35 (202)
278 1cke_A CK, MSSA, protein (cyti 87.5 0.23 7.7E-06 46.8 2.3 18 80-97 5-22 (227)
279 3b9q_A Chloroplast SRP recepto 87.3 0.17 5.9E-06 50.5 1.3 23 78-100 98-120 (302)
280 2rhm_A Putative kinase; P-loop 87.3 0.21 7.2E-06 45.6 1.9 19 79-97 4-22 (193)
281 2pez_A Bifunctional 3'-phospho 87.2 0.22 7.7E-06 45.1 1.9 19 79-97 4-22 (179)
282 2bbw_A Adenylate kinase 4, AK4 87.2 0.25 8.4E-06 47.5 2.3 21 80-100 27-47 (246)
283 1y63_A LMAJ004144AAA protein; 87.1 0.29 9.9E-06 44.7 2.7 19 79-97 9-27 (184)
284 1gvn_B Zeta; postsegregational 87.0 0.35 1.2E-05 47.8 3.4 18 80-97 33-50 (287)
285 2j37_W Signal recognition part 87.0 1.8 6.3E-05 46.2 9.2 20 81-100 102-121 (504)
286 1rj9_A FTSY, signal recognitio 86.8 0.26 8.9E-06 49.2 2.3 21 79-99 101-121 (304)
287 2dr3_A UPF0273 protein PH0284; 86.7 0.2 6.8E-06 47.7 1.4 24 77-100 20-43 (247)
288 3d3q_A TRNA delta(2)-isopenten 86.7 0.24 8.1E-06 50.2 2.0 17 81-97 8-24 (340)
289 1n0w_A DNA repair protein RAD5 86.7 0.22 7.6E-06 47.2 1.7 25 76-100 20-44 (243)
290 1tev_A UMP-CMP kinase; ploop, 86.6 0.26 8.9E-06 44.9 2.1 18 80-97 3-20 (196)
291 1nks_A Adenylate kinase; therm 86.5 0.26 8.9E-06 44.8 2.0 16 82-97 3-18 (194)
292 1ypw_A Transitional endoplasmi 86.5 0.049 1.7E-06 62.1 -3.6 19 79-97 510-528 (806)
293 2plr_A DTMP kinase, probable t 86.5 0.28 9.5E-06 45.4 2.2 19 79-97 3-21 (213)
294 2jaq_A Deoxyguanosine kinase; 86.5 0.3 1E-05 44.8 2.5 16 82-97 2-17 (205)
295 3tqc_A Pantothenate kinase; bi 86.4 0.43 1.5E-05 48.0 3.7 16 82-97 94-109 (321)
296 3crm_A TRNA delta(2)-isopenten 86.4 0.26 8.8E-06 49.6 2.1 17 81-97 6-22 (323)
297 2vp4_A Deoxynucleoside kinase; 86.4 0.24 8.2E-06 47.1 1.8 22 78-99 18-39 (230)
298 3kta_A Chromosome segregation 86.3 0.29 1E-05 44.3 2.3 19 81-99 27-45 (182)
299 1xjc_A MOBB protein homolog; s 86.3 0.33 1.1E-05 44.0 2.5 19 81-99 5-23 (169)
300 2jeo_A Uridine-cytidine kinase 86.3 0.24 8.2E-06 47.6 1.7 21 77-97 22-42 (245)
301 1cr0_A DNA primase/helicase; R 86.2 0.23 7.9E-06 49.1 1.6 28 72-99 27-54 (296)
302 3tlx_A Adenylate kinase 2; str 86.2 0.28 9.6E-06 47.1 2.2 21 79-99 28-48 (243)
303 2qt1_A Nicotinamide riboside k 86.2 0.21 7.2E-06 46.4 1.2 22 76-97 17-38 (207)
304 1f2t_A RAD50 ABC-ATPase; DNA d 86.2 0.29 9.9E-06 43.3 2.1 19 81-99 24-42 (149)
305 3thx_A DNA mismatch repair pro 86.2 0.96 3.3E-05 52.1 6.9 21 79-99 661-681 (934)
306 2yvu_A Probable adenylyl-sulfa 86.1 0.26 9.1E-06 44.9 1.8 19 79-97 12-30 (186)
307 2i3b_A HCR-ntpase, human cance 86.1 0.32 1.1E-05 44.9 2.4 20 80-99 1-20 (189)
308 1aky_A Adenylate kinase; ATP:A 86.0 0.35 1.2E-05 45.4 2.7 18 80-97 4-21 (220)
309 2f1r_A Molybdopterin-guanine d 86.0 0.18 6.3E-06 45.8 0.7 19 81-99 3-21 (171)
310 3fb4_A Adenylate kinase; psych 86.0 0.31 1.1E-05 45.5 2.3 18 82-99 2-19 (216)
311 1rz3_A Hypothetical protein rb 86.0 0.38 1.3E-05 44.6 2.9 19 79-97 21-39 (201)
312 1np6_A Molybdopterin-guanine d 86.0 0.34 1.2E-05 44.1 2.5 19 81-99 7-25 (174)
313 2onk_A Molybdate/tungstate ABC 85.9 0.23 8E-06 47.7 1.4 20 78-98 23-42 (240)
314 1m7g_A Adenylylsulfate kinase; 85.9 0.26 8.8E-06 46.1 1.6 22 76-97 21-42 (211)
315 2bbs_A Cystic fibrosis transme 85.8 0.22 7.6E-06 49.4 1.2 21 78-98 62-82 (290)
316 3fvq_A Fe(3+) IONS import ATP- 85.8 0.22 7.5E-06 50.9 1.2 23 77-99 27-49 (359)
317 2vli_A Antibiotic resistance p 85.7 0.29 9.7E-06 44.3 1.8 18 80-97 5-22 (183)
318 2z0h_A DTMP kinase, thymidylat 85.6 0.33 1.1E-05 44.4 2.3 16 82-97 2-17 (197)
319 1zak_A Adenylate kinase; ATP:A 85.6 0.3 1E-05 46.0 2.0 18 80-97 5-22 (222)
320 3rlf_A Maltose/maltodextrin im 85.6 0.25 8.7E-06 50.9 1.5 24 77-100 26-49 (381)
321 3aez_A Pantothenate kinase; tr 85.6 0.24 8.1E-06 49.7 1.3 21 77-97 87-107 (312)
322 2zts_A Putative uncharacterize 85.5 0.25 8.5E-06 47.1 1.4 24 77-100 27-50 (251)
323 1z47_A CYSA, putative ABC-tran 85.4 0.25 8.6E-06 50.5 1.4 23 77-99 38-60 (355)
324 3dl0_A Adenylate kinase; phosp 85.4 0.34 1.2E-05 45.3 2.3 18 82-99 2-19 (216)
325 2xxa_A Signal recognition part 85.4 2.1 7.1E-05 44.9 8.5 20 81-100 101-120 (433)
326 1e6c_A Shikimate kinase; phosp 85.3 0.35 1.2E-05 43.2 2.2 17 81-97 3-19 (173)
327 1ofh_A ATP-dependent HSL prote 85.2 0.5 1.7E-05 46.5 3.5 19 79-97 49-67 (310)
328 2wwf_A Thymidilate kinase, put 85.2 0.37 1.2E-05 44.7 2.3 19 79-97 9-27 (212)
329 2cdn_A Adenylate kinase; phosp 85.2 0.42 1.4E-05 44.1 2.8 17 81-97 21-37 (201)
330 4e22_A Cytidylate kinase; P-lo 85.1 0.37 1.3E-05 46.6 2.4 20 78-97 25-44 (252)
331 1nlf_A Regulatory protein REPA 85.0 0.27 9.2E-06 48.2 1.4 25 76-100 26-50 (279)
332 2yyz_A Sugar ABC transporter, 85.0 0.28 9.5E-06 50.2 1.5 24 77-100 26-49 (359)
333 2pjz_A Hypothetical protein ST 85.0 0.27 9.2E-06 48.0 1.4 20 77-97 28-47 (263)
334 1gtv_A TMK, thymidylate kinase 85.0 0.19 6.5E-06 46.8 0.3 16 82-97 2-17 (214)
335 2r44_A Uncharacterized protein 85.0 0.41 1.4E-05 48.0 2.8 28 70-97 36-63 (331)
336 2it1_A 362AA long hypothetical 85.0 0.28 9.6E-06 50.2 1.5 23 77-99 26-48 (362)
337 2og2_A Putative signal recogni 84.9 0.26 9E-06 50.4 1.3 22 79-100 156-177 (359)
338 1nn5_A Similar to deoxythymidy 84.9 0.37 1.3E-05 44.7 2.3 20 78-97 7-26 (215)
339 1qf9_A UMP/CMP kinase, protein 84.8 0.35 1.2E-05 43.9 2.0 17 81-97 7-23 (194)
340 1ukz_A Uridylate kinase; trans 84.6 0.39 1.3E-05 44.3 2.3 17 81-97 16-32 (203)
341 3eph_A TRNA isopentenyltransfe 84.6 0.29 1E-05 50.7 1.5 17 81-97 3-19 (409)
342 2pbr_A DTMP kinase, thymidylat 84.6 0.4 1.4E-05 43.6 2.3 16 82-97 2-17 (195)
343 1in4_A RUVB, holliday junction 84.5 0.44 1.5E-05 48.1 2.8 17 81-97 52-68 (334)
344 1v43_A Sugar-binding transport 84.3 0.31 1.1E-05 50.1 1.5 23 77-99 34-56 (372)
345 4eaq_A DTMP kinase, thymidylat 84.3 0.4 1.4E-05 45.6 2.2 19 79-97 25-43 (229)
346 4f4c_A Multidrug resistance pr 84.2 0.93 3.2E-05 54.6 5.8 25 77-101 441-465 (1321)
347 1g29_1 MALK, maltose transport 84.2 0.31 1.1E-05 50.2 1.4 22 77-98 26-47 (372)
348 2xb4_A Adenylate kinase; ATP-b 84.2 0.43 1.5E-05 45.1 2.3 16 82-97 2-17 (223)
349 3d31_A Sulfate/molybdate ABC t 84.1 0.25 8.7E-06 50.3 0.8 24 77-100 23-46 (348)
350 3thx_B DNA mismatch repair pro 84.1 1.3 4.6E-05 50.8 6.8 22 78-99 671-692 (918)
351 1uaa_A REP helicase, protein ( 84.1 0.9 3.1E-05 50.5 5.3 55 66-122 3-73 (673)
352 3gd7_A Fusion complex of cysti 84.0 0.29 1E-05 50.6 1.2 23 77-99 44-66 (390)
353 2pt5_A Shikimate kinase, SK; a 84.0 0.46 1.6E-05 42.2 2.4 17 82-98 2-18 (168)
354 3tui_C Methionine import ATP-b 83.9 0.33 1.1E-05 49.7 1.5 23 77-99 51-73 (366)
355 1via_A Shikimate kinase; struc 83.9 0.4 1.4E-05 43.1 1.9 16 82-97 6-21 (175)
356 2iyv_A Shikimate kinase, SK; t 83.7 0.45 1.5E-05 43.1 2.3 17 81-97 3-19 (184)
357 1jjv_A Dephospho-COA kinase; P 83.7 0.41 1.4E-05 44.3 2.0 16 82-97 4-19 (206)
358 1g5t_A COB(I)alamin adenosyltr 83.7 3.7 0.00013 37.9 8.4 48 163-214 119-170 (196)
359 2if2_A Dephospho-COA kinase; a 83.6 0.41 1.4E-05 44.2 1.9 16 82-97 3-18 (204)
360 1e4v_A Adenylate kinase; trans 83.6 0.42 1.4E-05 44.7 2.0 16 82-97 2-17 (214)
361 1gm5_A RECG; helicase, replica 83.6 1.1 3.6E-05 50.8 5.6 78 259-341 417-495 (780)
362 3hws_A ATP-dependent CLP prote 83.5 0.75 2.6E-05 46.9 4.0 19 79-97 50-68 (363)
363 3a4m_A L-seryl-tRNA(SEC) kinas 83.5 0.41 1.4E-05 46.4 1.9 18 80-97 4-21 (260)
364 2qen_A Walker-type ATPase; unk 83.5 0.76 2.6E-05 45.9 4.0 29 73-101 24-52 (350)
365 1ak2_A Adenylate kinase isoenz 83.4 0.54 1.9E-05 44.6 2.7 18 80-97 16-33 (233)
366 3qf7_A RAD50; ABC-ATPase, ATPa 83.3 0.45 1.5E-05 48.8 2.2 18 82-99 25-42 (365)
367 1vht_A Dephospho-COA kinase; s 83.3 0.41 1.4E-05 44.8 1.8 18 80-97 4-21 (218)
368 1odf_A YGR205W, hypothetical 3 83.0 0.44 1.5E-05 47.2 2.0 18 80-97 31-48 (290)
369 3be4_A Adenylate kinase; malar 82.6 0.56 1.9E-05 43.9 2.5 17 81-97 6-22 (217)
370 1ixz_A ATP-dependent metallopr 82.4 0.47 1.6E-05 45.6 1.9 17 81-97 50-66 (254)
371 1oxx_K GLCV, glucose, ABC tran 82.3 0.26 9E-06 50.3 0.0 23 77-99 28-50 (353)
372 2qby_B CDC6 homolog 3, cell di 82.3 0.75 2.6E-05 46.8 3.5 43 428-470 316-360 (384)
373 1tq4_A IIGP1, interferon-induc 82.2 0.76 2.6E-05 47.9 3.5 27 73-99 62-88 (413)
374 4a82_A Cystic fibrosis transme 82.0 0.42 1.4E-05 52.3 1.5 23 77-99 364-386 (578)
375 3nbx_X ATPase RAVA; AAA+ ATPas 81.9 0.82 2.8E-05 48.9 3.7 28 70-97 31-58 (500)
376 1pjr_A PCRA; DNA repair, DNA r 81.7 1.2 3.9E-05 50.2 5.0 54 66-121 12-81 (724)
377 3sop_A Neuronal-specific septi 81.5 0.49 1.7E-05 46.3 1.7 18 82-99 4-21 (270)
378 1e9r_A Conjugal transfer prote 81.4 0.47 1.6E-05 49.7 1.6 21 79-99 52-72 (437)
379 3auy_A DNA double-strand break 81.4 0.51 1.7E-05 48.4 1.8 19 81-99 26-44 (371)
380 1pui_A ENGB, probable GTP-bind 81.3 0.4 1.4E-05 44.2 0.9 24 78-101 24-47 (210)
381 1sq5_A Pantothenate kinase; P- 81.3 0.81 2.8E-05 45.6 3.2 20 78-97 78-97 (308)
382 1uf9_A TT1252 protein; P-loop, 81.3 0.59 2E-05 42.9 2.0 17 81-97 9-25 (203)
383 3b5x_A Lipid A export ATP-bind 81.1 0.51 1.7E-05 51.6 1.8 23 77-99 366-388 (582)
384 4tmk_A Protein (thymidylate ki 81.1 0.63 2.1E-05 43.8 2.2 19 79-97 2-20 (213)
385 3nwj_A ATSK2; P loop, shikimat 81.0 0.54 1.8E-05 45.5 1.7 18 80-97 48-65 (250)
386 3v9p_A DTMP kinase, thymidylat 80.9 0.65 2.2E-05 44.2 2.2 21 77-97 22-42 (227)
387 2p5t_B PEZT; postsegregational 80.8 0.49 1.7E-05 45.7 1.3 18 80-97 32-49 (253)
388 3bh0_A DNAB-like replicative h 80.8 0.5 1.7E-05 47.3 1.5 30 71-100 59-88 (315)
389 2yv5_A YJEQ protein; hydrolase 80.7 0.94 3.2E-05 45.0 3.4 25 75-99 160-184 (302)
390 3qf4_B Uncharacterized ABC tra 80.5 0.59 2E-05 51.3 2.0 23 77-99 378-400 (598)
391 4edh_A DTMP kinase, thymidylat 80.4 0.68 2.3E-05 43.5 2.2 20 78-97 4-23 (213)
392 4ag6_A VIRB4 ATPase, type IV s 80.4 0.69 2.4E-05 47.7 2.4 19 79-97 34-52 (392)
393 3qf4_A ABC transporter, ATP-bi 80.4 0.51 1.7E-05 51.7 1.4 24 77-100 366-389 (587)
394 2npi_A Protein CLP1; CLP1-PCF1 80.4 0.51 1.8E-05 50.0 1.4 26 73-98 131-156 (460)
395 3b60_A Lipid A export ATP-bind 80.3 0.49 1.7E-05 51.8 1.3 23 77-99 366-388 (582)
396 3qks_A DNA double-strand break 79.9 0.74 2.5E-05 42.8 2.2 20 80-99 23-42 (203)
397 2yl4_A ATP-binding cassette SU 79.9 0.54 1.8E-05 51.6 1.4 23 77-99 367-389 (595)
398 3u4q_A ATP-dependent helicase/ 79.7 1.1 3.7E-05 53.6 4.1 57 63-121 8-82 (1232)
399 1iy2_A ATP-dependent metallopr 79.7 0.66 2.2E-05 45.3 1.9 17 81-97 74-90 (278)
400 3uk6_A RUVB-like 2; hexameric 79.6 1 3.5E-05 45.6 3.4 17 81-97 71-87 (368)
401 1svm_A Large T antigen; AAA+ f 79.5 0.71 2.4E-05 47.5 2.1 21 77-97 166-186 (377)
402 1nij_A Hypothetical protein YJ 79.2 0.61 2.1E-05 46.7 1.5 18 81-98 5-22 (318)
403 3lv8_A DTMP kinase, thymidylat 79.1 0.86 2.9E-05 43.6 2.4 19 79-97 26-44 (236)
404 3qkt_A DNA double-strand break 79.0 0.7 2.4E-05 46.7 1.9 20 80-99 23-42 (339)
405 3tmk_A Thymidylate kinase; pho 79.0 0.87 3E-05 43.0 2.4 19 79-97 4-22 (216)
406 1e69_A Chromosome segregation 79.0 0.78 2.7E-05 46.0 2.2 19 81-99 25-43 (322)
407 1ltq_A Polynucleotide kinase; 78.9 0.82 2.8E-05 45.0 2.3 17 81-97 3-19 (301)
408 2qag_B Septin-6, protein NEDD5 78.9 0.63 2.1E-05 48.6 1.5 26 75-100 35-62 (427)
409 1p5z_B DCK, deoxycytidine kina 78.5 0.76 2.6E-05 44.4 1.9 22 78-99 22-43 (263)
410 4hlc_A DTMP kinase, thymidylat 78.4 0.78 2.7E-05 42.9 1.8 18 80-97 2-19 (205)
411 1pzn_A RAD51, DNA repair and r 78.3 0.57 1.9E-05 47.7 0.9 22 78-99 129-150 (349)
412 2x8a_A Nuclear valosin-contain 78.2 0.77 2.6E-05 44.9 1.8 17 81-97 45-61 (274)
413 3cr8_A Sulfate adenylyltranfer 78.1 0.8 2.7E-05 49.6 2.1 21 77-97 366-386 (552)
414 1tf7_A KAIC; homohexamer, hexa 78.0 0.64 2.2E-05 50.1 1.3 26 76-101 35-60 (525)
415 2dyk_A GTP-binding protein; GT 77.8 0.95 3.2E-05 39.3 2.2 20 82-101 3-22 (161)
416 1a7j_A Phosphoribulokinase; tr 77.7 0.87 3E-05 45.0 2.1 18 80-97 5-22 (290)
417 2grj_A Dephospho-COA kinase; T 77.6 0.99 3.4E-05 41.7 2.3 18 80-97 12-29 (192)
418 3lda_A DNA repair protein RAD5 77.5 0.68 2.3E-05 48.0 1.3 23 78-100 176-198 (400)
419 1lw7_A Transcriptional regulat 77.5 0.72 2.5E-05 47.1 1.4 24 76-99 164-189 (365)
420 2ius_A DNA translocase FTSK; n 77.5 0.85 2.9E-05 48.8 2.0 20 78-97 165-184 (512)
421 2rcn_A Probable GTPase ENGC; Y 77.4 1.4 4.7E-05 45.0 3.5 25 76-100 211-235 (358)
422 3pxg_A Negative regulator of g 77.1 1.4 4.7E-05 46.7 3.5 25 73-97 192-218 (468)
423 1uj2_A Uridine-cytidine kinase 77.0 0.92 3.2E-05 43.6 2.0 17 81-97 23-39 (252)
424 1u0l_A Probable GTPase ENGC; p 77.0 1.4 4.9E-05 43.6 3.4 24 77-100 166-189 (301)
425 1yqt_A RNAse L inhibitor; ATP- 76.7 0.82 2.8E-05 49.5 1.6 24 77-100 44-67 (538)
426 2qm8_A GTPase/ATPase; G protei 76.5 0.81 2.8E-05 46.3 1.5 28 72-99 43-74 (337)
427 1z2a_A RAS-related protein RAB 76.4 1.1 3.6E-05 39.2 2.1 19 82-100 7-25 (168)
428 2r6a_A DNAB helicase, replicat 76.4 0.81 2.8E-05 48.3 1.5 30 71-100 194-223 (454)
429 2ocp_A DGK, deoxyguanosine kin 76.3 0.89 3.1E-05 43.3 1.7 18 80-97 2-19 (241)
430 3r20_A Cytidylate kinase; stru 76.3 1.2 4.3E-05 42.4 2.6 20 79-98 8-27 (233)
431 4f4c_A Multidrug resistance pr 76.0 0.93 3.2E-05 54.6 2.0 23 77-99 1102-1124(1321)
432 3ake_A Cytidylate kinase; CMP 76.0 1.2 3.9E-05 41.0 2.3 16 82-97 4-19 (208)
433 2z43_A DNA repair and recombin 75.9 0.81 2.8E-05 45.9 1.3 23 77-99 104-126 (324)
434 2ged_A SR-beta, signal recogni 75.8 1.1 3.9E-05 40.4 2.2 21 80-100 48-68 (193)
435 2ce2_X GTPase HRAS; signaling 75.7 1 3.6E-05 39.0 1.8 19 82-100 5-23 (166)
436 2f9l_A RAB11B, member RAS onco 75.7 1.1 3.9E-05 40.9 2.1 19 82-100 7-25 (199)
437 1ky3_A GTP-binding protein YPT 75.4 1.2 4.1E-05 39.5 2.2 19 82-100 10-28 (182)
438 3ux8_A Excinuclease ABC, A sub 75.1 0.88 3E-05 50.6 1.4 22 78-99 346-367 (670)
439 2zr9_A Protein RECA, recombina 74.8 0.93 3.2E-05 46.1 1.4 25 76-100 57-81 (349)
440 1v5w_A DMC1, meiotic recombina 74.8 0.9 3.1E-05 46.0 1.3 23 77-99 119-141 (343)
441 2f6r_A COA synthase, bifunctio 74.8 1.2 4E-05 43.8 2.0 17 81-97 76-92 (281)
442 1oix_A RAS-related protein RAB 74.7 1.1 3.9E-05 40.7 1.9 18 82-99 31-48 (191)
443 1z0j_A RAB-22, RAS-related pro 74.7 1.3 4.4E-05 38.8 2.2 19 82-100 8-26 (170)
444 1kao_A RAP2A; GTP-binding prot 74.6 1.3 4.4E-05 38.5 2.2 19 82-100 5-23 (167)
445 1ek0_A Protein (GTP-binding pr 74.6 1.3 4.3E-05 38.8 2.1 19 82-100 5-23 (170)
446 1tue_A Replication protein E1; 74.6 1.2 4E-05 41.8 1.8 17 81-97 59-75 (212)
447 1u8z_A RAS-related protein RAL 74.4 1.3 4.4E-05 38.5 2.1 19 82-100 6-24 (168)
448 1c9k_A COBU, adenosylcobinamid 74.3 1.3 4.3E-05 40.5 2.0 15 83-97 2-16 (180)
449 2erx_A GTP-binding protein DI- 74.2 1.3 4.6E-05 38.7 2.2 19 82-100 5-23 (172)
450 3zvl_A Bifunctional polynucleo 74.1 1.5 5.2E-05 45.6 2.8 18 80-97 258-275 (416)
451 3hr8_A Protein RECA; alpha and 74.1 0.87 3E-05 46.5 0.9 24 77-100 58-81 (356)
452 2wji_A Ferrous iron transport 74.1 1.3 4.5E-05 39.0 2.1 19 82-100 5-23 (165)
453 2wsm_A Hydrogenase expression/ 74.0 1.3 4.4E-05 41.2 2.1 21 79-99 29-49 (221)
454 1g41_A Heat shock protein HSLU 73.9 3 0.0001 43.7 5.1 18 80-97 50-67 (444)
455 1g8p_A Magnesium-chelatase 38 73.9 1.5 5.2E-05 43.9 2.7 18 80-97 45-62 (350)
456 3ozx_A RNAse L inhibitor; ATP 73.7 1 3.5E-05 48.6 1.5 23 78-100 292-314 (538)
457 2zej_A Dardarin, leucine-rich 73.7 1.4 4.8E-05 39.6 2.2 20 83-102 5-24 (184)
458 2c9o_A RUVB-like 1; hexameric 73.7 2 6.9E-05 45.2 3.7 18 80-97 63-80 (456)
459 3pqc_A Probable GTP-binding pr 73.7 1.2 3.9E-05 40.2 1.6 19 82-100 25-43 (195)
460 3bk7_A ABC transporter ATP-bin 73.6 1.1 3.7E-05 49.2 1.6 25 77-101 114-138 (607)
461 3oiy_A Reverse gyrase helicase 73.6 3.6 0.00012 42.3 5.6 79 257-341 62-144 (414)
462 1g16_A RAS-related protein SEC 73.6 1.3 4.3E-05 38.8 1.8 20 82-101 5-24 (170)
463 1c1y_A RAS-related protein RAP 73.6 1.4 4.8E-05 38.4 2.1 19 82-100 5-23 (167)
464 1wms_A RAB-9, RAB9, RAS-relate 73.5 1.4 4.8E-05 38.9 2.2 19 82-100 9-27 (177)
465 1z08_A RAS-related protein RAB 73.5 1.4 4.9E-05 38.5 2.2 19 82-100 8-26 (170)
466 2r62_A Cell division protease 73.4 0.67 2.3E-05 44.8 -0.1 18 80-97 44-61 (268)
467 3ld9_A DTMP kinase, thymidylat 73.2 1.4 4.9E-05 41.6 2.2 19 79-97 20-38 (223)
468 1svi_A GTP-binding protein YSX 73.2 1.2 4.1E-05 40.2 1.6 21 81-101 24-44 (195)
469 3j16_B RLI1P; ribosome recycli 73.1 1.1 3.9E-05 49.0 1.6 25 76-100 99-123 (608)
470 2vhj_A Ntpase P4, P4; non- hyd 73.0 1.3 4.5E-05 44.4 1.9 23 77-99 120-142 (331)
471 2i1q_A DNA repair and recombin 73.0 0.92 3.2E-05 45.3 0.8 23 77-99 95-117 (322)
472 4aby_A DNA repair protein RECN 72.9 0.49 1.7E-05 49.1 -1.3 20 79-99 60-79 (415)
473 3hjn_A DTMP kinase, thymidylat 72.8 1.4 4.8E-05 40.7 2.0 17 82-98 2-18 (197)
474 1jr3_D DNA polymerase III, del 72.5 9.9 0.00034 37.9 8.5 102 79-207 17-118 (343)
475 2wjg_A FEOB, ferrous iron tran 72.4 1.5 5.2E-05 39.3 2.1 19 82-100 9-27 (188)
476 1q3t_A Cytidylate kinase; nucl 72.4 1.8 6.1E-05 41.0 2.7 20 78-97 14-33 (236)
477 3tw8_B RAS-related protein RAB 72.4 1.5 5.3E-05 38.7 2.1 20 82-101 11-30 (181)
478 3q85_A GTP-binding protein REM 72.4 1.5 5.3E-05 38.3 2.1 19 83-101 5-23 (169)
479 1w1w_A Structural maintenance 72.3 1.5 5.2E-05 45.7 2.3 22 79-100 25-46 (430)
480 3euj_A Chromosome partition pr 72.3 1.2 4.1E-05 47.3 1.6 19 81-99 30-48 (483)
481 1r2q_A RAS-related protein RAB 72.2 1.6 5.4E-05 38.1 2.1 19 82-100 8-26 (170)
482 2lkc_A Translation initiation 72.2 1.9 6.4E-05 38.1 2.6 21 80-100 8-28 (178)
483 4a1f_A DNAB helicase, replicat 72.0 1.1 3.8E-05 45.3 1.1 31 70-100 36-66 (338)
484 2r2a_A Uncharacterized protein 72.0 1.5 5.1E-05 40.7 2.0 16 82-97 7-22 (199)
485 2www_A Methylmalonic aciduria 72.0 1.6 5.3E-05 44.4 2.3 21 80-100 74-94 (349)
486 1nrj_B SR-beta, signal recogni 71.9 1.7 5.7E-05 40.2 2.3 19 81-99 13-31 (218)
487 3ux8_A Excinuclease ABC, A sub 71.9 1.2 4E-05 49.6 1.4 21 77-97 41-61 (670)
488 1t9h_A YLOQ, probable GTPase E 71.9 0.55 1.9E-05 46.9 -1.1 25 76-100 169-193 (307)
489 2q0z_X Protein Pro2281; SEC63, 71.8 2.5 8.7E-05 42.6 3.8 86 453-538 14-104 (339)
490 1u94_A RECA protein, recombina 71.7 1.2 4.1E-05 45.5 1.3 23 77-99 60-82 (356)
491 2nzj_A GTP-binding protein REM 71.7 1.7 5.7E-05 38.3 2.2 20 82-101 6-25 (175)
492 3lxx_A GTPase IMAP family memb 71.7 1.6 5.5E-05 41.3 2.2 20 82-101 31-50 (239)
493 2q6t_A DNAB replication FORK h 71.7 1.1 3.8E-05 47.1 1.1 29 71-99 191-219 (444)
494 2y8e_A RAB-protein 6, GH09086P 71.4 1.5 5.2E-05 38.7 1.8 19 82-100 16-34 (179)
495 2eyq_A TRCF, transcription-rep 71.2 5.4 0.00018 47.2 6.9 79 258-341 651-730 (1151)
496 3bk7_A ABC transporter ATP-bin 71.0 1.3 4.5E-05 48.6 1.5 22 78-99 380-401 (607)
497 2hf9_A Probable hydrogenase ni 71.0 1.6 5.6E-05 40.6 2.0 19 81-99 39-57 (226)
498 1z0f_A RAB14, member RAS oncog 71.0 1.7 5.9E-05 38.3 2.1 19 82-100 17-35 (179)
499 1yqt_A RNAse L inhibitor; ATP- 71.0 1.3 4.5E-05 47.8 1.5 22 78-99 310-331 (538)
500 2efe_B Small GTP-binding prote 70.9 1.8 6E-05 38.4 2.2 19 82-100 14-32 (181)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.1e-93 Score=812.12 Aligned_cols=528 Identities=49% Similarity=0.802 Sum_probs=493.2
Q ss_pred cccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHH
Q 037717 49 VVKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVA 113 (582)
Q Consensus 49 ~~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a 113 (582)
.....+.++.+.|..+|++.++++|+.++.++++++++|||||||||++|+++++ |+|++|.+++
T Consensus 78 ~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~ 157 (773)
T 2xau_A 78 EFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVA 157 (773)
T ss_dssp BCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHH
Confidence 3346788888889999999999999999999999999999999999999988653 9999999999
Q ss_pred HHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 114 ARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 114 ~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
.+++++++..+|..+||.++++.....+++|+++|+|++++.+..++.+.++++|||||+|+|+++.|.++.+++.+...
T Consensus 158 ~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~ 237 (773)
T 2xau_A 158 QRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR 237 (773)
T ss_dssp HHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh
Confidence 99999999999999999999988888899999999999999999988899999999999999999999999999999988
Q ss_pred CCCceEEEecccCChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Q 037717 194 RPDLKLLISSATLDAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIE 273 (582)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 273 (582)
+++.++|+||||++.+.+++||++++++.++|+.+|++++|...+..++....+..+++++...++|++||||+|+++++
T Consensus 238 ~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 238 RPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp CTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred CCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 89999999999999999999999999999999999999999998888999888888888888777899999999999999
Q ss_pred HHHHHHHHhhhcc--CCCCCCeEEEEecCCCCHHHHHHhcCCCC-----CCCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 274 RAEEILKQRTRGL--GTKIAELIICPIYANLPTELQAKIFEPTP-----ERARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 274 ~~~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~v~~~~~-----~g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
.+++.|.+....+ .....++.+.++||+|++++|+++++.|+ +|.++||||||++|+|||||+|++|||+|++
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 9999998644322 11225788999999999999999999999 9999999999999999999999999999999
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh-hhh--hhhHhhhh--HHHHHHHHhcCCcc
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR-IWM--TILCQKYN--ELIWKMLSLFSNVL 421 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~-~~~--~pei~r~~--~~~L~l~~l~~~~~ 421 (582)
|.+.||+..|++.+...|+|+++|.||+|||||.++|.||+||++.++.. +.+ .|||++.+ +++|+++.+|++++
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~ 477 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDL 477 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCG
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCCh
Confidence 99999999999999999999999999999999999999999999999954 444 59999999 99999999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCccc
Q 037717 422 VNFDFIDPPLEEALLKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSIFY 501 (582)
Q Consensus 422 ~~f~~~~~p~~~~i~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~f~ 501 (582)
..|+|++||+.+.+..|++.|..+||||++|+||++|+.|++||++|++||||+.|..++|++++++|+|||++ .++|+
T Consensus 478 ~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~-~~~f~ 556 (773)
T 2xau_A 478 VHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFI 556 (773)
T ss_dssp GGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTS-CCCBC
T ss_pred hhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhccc-CCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred cChhhHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHcC---Cc-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccc
Q 037717 502 RPKDKQIYADNARMNFHLGDVGDRIALLRVYNCWRECN---YS-TEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTS 577 (582)
Q Consensus 502 ~~~~~~~~~~~~~~~f~~~~~sD~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~ 577 (582)
+|.+.+.+++.++.+|.... |||++++|+|++|.+.+ .+ .+||++||||+++|++|.++|.||.++|.+++++..
T Consensus 557 ~~~~~~~~~~~~~~~f~~~~-~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~ 635 (773)
T 2xau_A 557 RPTKDKKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELN 635 (773)
T ss_dssp CCTTCHHHHHHHHHTTCCTT-BHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CChHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999998754 99999999999997654 44 789999999999999999999999999999998865
Q ss_pred c
Q 037717 578 I 578 (582)
Q Consensus 578 ~ 578 (582)
+
T Consensus 636 ~ 636 (773)
T 2xau_A 636 T 636 (773)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-58 Score=524.66 Aligned_cols=509 Identities=16% Similarity=0.129 Sum_probs=369.2
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHH-HhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHH
Q 037717 51 KSTLEMLQEERKTLPIYPFWEELLQA-VSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARV 116 (582)
Q Consensus 51 ~~~~~~~~~~r~~lPi~~~~~~il~~-i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~v 116 (582)
.....+..+.+.--..+++|.+++.. +.++++++++||||||||+++++++++ |+|++|.+++.++
T Consensus 16 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~ 95 (715)
T 2va8_A 16 PSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF 95 (715)
T ss_dssp CHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHH
Confidence 34455555544444689999999998 889999999999999999999988763 9999999999998
Q ss_pred H--HHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 117 S--QEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 117 a--~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
. .++|..+|..+|+..+.+... .+++|+|+|||+|.+.+..++. +.++++|||||+|+.+- .+ .-..++.++..
T Consensus 96 ~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-~~-~~~~l~~i~~~ 172 (715)
T 2va8_A 96 KDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND-PE-RGPVVESVTIR 172 (715)
T ss_dssp GGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC-TT-THHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC-cc-cchHHHHHHHh
Confidence 3 234555555566554444333 3789999999999999988877 89999999999997431 11 11222333323
Q ss_pred CCCceEEEecccC-ChHHHHhhhCCCCEEeeCCceeceeEEEecCC--------------chhH--HHHHHHHHHHHHhc
Q 037717 194 RPDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVELFYTKAP--------------EVDY--IEAAIVTALQIHVN 256 (582)
Q Consensus 194 ~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~--------------~~~~--~~~~~~~~~~i~~~ 256 (582)
.+++|+|+||||+ |++.+++||+ ++++..++|++|+..++...+ ...+ .......+.+.+
T Consensus 173 ~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (715)
T 2va8_A 173 AKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL-- 249 (715)
T ss_dssp HHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--
T ss_pred cccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--
Confidence 3389999999999 7999999997 677888889888876542211 0000 122233333333
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhc--cCC-----------CC--------------CCeEEEEecCCCCHHHHHH
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRG--LGT-----------KI--------------AELIICPIYANLPTELQAK 309 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~--~~~-----------~~--------------~~~~v~~lh~~l~~~~r~~ 309 (582)
.+++++||||+|+++++.+++.|.+.... +.. .+ -...+.++||+|++++|+.
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 35799999999999999999999875321 000 00 0124888999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEE
Q 037717 310 IFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCF 386 (582)
Q Consensus 310 v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~ 386 (582)
+++.|++|.++|||||+++|+|||+|++++|||+ ...||++.+.. ..|+|.++|.||+|||||.| +|.||
T Consensus 330 v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 402 (715)
T 2va8_A 330 IEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESI 402 (715)
T ss_dssp HHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred HHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999976 45688665432 67999999999999999999 89999
Q ss_pred EeeChhh-hhh----hhh-hhhHhhhh--------HHHHHHHHhcC----Cccccc---cCCC-CchHHHHHHHHHHHHH
Q 037717 387 RLYTLHN-YHR----IWM-TILCQKYN--------ELIWKMLSLFS----NVLVNF---DFID-PPLEEALLKAFELLYA 444 (582)
Q Consensus 387 ~L~~~~~-~~~----~~~-~pei~r~~--------~~~L~l~~l~~----~~~~~f---~~~~-~p~~~~i~~al~~L~~ 444 (582)
+++++.+ +.. ++. .||+.+++ ..++.+...|. .++..| .|+. +|+...+..+++.|..
T Consensus 403 ~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~ 482 (715)
T 2va8_A 403 VVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLE 482 (715)
T ss_dssp EECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHH
Confidence 9998765 322 223 47877765 25666666662 123322 4554 5566789999999999
Q ss_pred cCCCcCCC---ccchhchhhhcCCCChHHHHHHHhcccc---cChHHHHHHHHhhccCCCccccChhhHHHHHHHhh---
Q 037717 445 LGALNKAG---QLTRVGRQMAEFPIDPKLSKTIVSLDKY---KCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARM--- 515 (582)
Q Consensus 445 lgal~~~~---~lT~lG~~~a~lpl~p~~~k~l~~~~~~---~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~--- 515 (582)
+|+|+.++ .+|++|+.|+++|++|.++++++.+... .|..+++.|+|+.+..+++|++|.+.....+....
T Consensus 483 ~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~ 562 (715)
T 2va8_A 483 HSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDC 562 (715)
T ss_dssp TTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSS
T ss_pred CcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcch
Confidence 99998764 8999999999999999999999999988 79999999999988768899988765544333211
Q ss_pred h-ccCCCCC--------cHHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Q 037717 516 N-FHLGDVG--------DRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARV 572 (582)
Q Consensus 516 ~-f~~~~~s--------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~ 572 (582)
. +...... .|+-..-+.++|.+...-..+|.++.+....|..+.+...+|...+.++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i 628 (715)
T 2va8_A 563 ELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHL 628 (715)
T ss_dssp CCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHH
Confidence 1 1110111 3444555678898877778899999999999988777777766655443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-57 Score=517.01 Aligned_cols=488 Identities=16% Similarity=0.139 Sum_probs=377.5
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHH--HhCCccCcEEeE
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQ--EMGVKLGHEVGY 130 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~--~~~~~~g~~vgy 130 (582)
..+++|.+++.++.++++++++||||||||+++++++++ |+|++|.+++.++.. .+|..++..+|+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~ 104 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGD 104 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 678899999999999999999999999999999888764 999999999998832 234455555565
Q ss_pred EEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccC-----CCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 131 SIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQE-----RTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 131 ~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~He-----R~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
..+.+... .+++|+|+|||+|.+.+..++. +.++++|||||+|+ |+..++.++..++. .++++|+|+|||
T Consensus 105 ~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~ii~lSA 180 (702)
T 2p6r_A 105 YESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRVIGLSA 180 (702)
T ss_dssp CBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEEEEEEC
T ss_pred CCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cCcCceEEEECC
Confidence 54444332 3789999999999999988777 89999999999996 88888888887775 467899999999
Q ss_pred cC-ChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHH---------HHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Q 037717 205 TL-DAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEA---------AIVTALQIHVNEPTGDILVFLTGQDEIER 274 (582)
Q Consensus 205 T~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 274 (582)
|+ |++.+++||+ ++++..+++++|+..++...+...+.+. ....+.+.. .+++++||||+++++++.
T Consensus 181 Tl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~ 257 (702)
T 2p6r_A 181 TAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEK 257 (702)
T ss_dssp CCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHH
T ss_pred CcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHH
Confidence 99 6999999997 7788889999998876643322111100 122223332 247899999999999999
Q ss_pred HHHHHHHhhhccCCCC----------C-----------CeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccc
Q 037717 275 AEEILKQRTRGLGTKI----------A-----------ELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLT 333 (582)
Q Consensus 275 ~~~~L~~~~~~~~~~~----------~-----------~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gid 333 (582)
+++.|.+.....-... . +..+.++||+|++++|+.+++.|++|.++|||||+++++|||
T Consensus 258 ~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gid 337 (702)
T 2p6r_A 258 TAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVN 337 (702)
T ss_dssp HHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSC
T ss_pred HHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCC
Confidence 9999987543210000 0 123778999999999999999999999999999999999999
Q ss_pred cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChhhhhhhh----h-hhhHhh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLHNYHRIW----M-TILCQK 405 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~~~~~~~----~-~pei~r 405 (582)
+|++++|||+ ...|| +. ..|.|.++|.||+|||||.| +|.||+++++.+++... . .||+.+
T Consensus 338 ip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~ 406 (702)
T 2p6r_A 338 LPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERIT 406 (702)
T ss_dssp CCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCC
T ss_pred CCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCce
Confidence 9999999975 55677 21 57899999999999999999 79999999988765433 2 477776
Q ss_pred hh--------HHHHHHHHhcC-C---ccccc---cCC----CCchHHHHHHHHHHHHHcCCCcCC--CccchhchhhhcC
Q 037717 406 YN--------ELIWKMLSLFS-N---VLVNF---DFI----DPPLEEALLKAFELLYALGALNKA--GQLTRVGRQMAEF 464 (582)
Q Consensus 406 ~~--------~~~L~l~~l~~-~---~~~~f---~~~----~~p~~~~i~~al~~L~~lgal~~~--~~lT~lG~~~a~l 464 (582)
++ ..++.+...|. . ++..| .|+ ++|..+.+..+++.|...|+|+.+ +.+|++|+.|+.+
T Consensus 407 s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~ 486 (702)
T 2p6r_A 407 SKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRL 486 (702)
T ss_dssp CCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHT
T ss_pred eecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHH
Confidence 65 24555566662 2 22222 333 367889999999999999999877 7899999999999
Q ss_pred CCChHHHHHHHhcccc--cChHHHHHHHHhhccCCCccccChhhHHHHHHH-h--hhc-cCC-CCC-------cHHHHHH
Q 037717 465 PIDPKLSKTIVSLDKY--KCSDEIITIAAMLFVGNSIFYRPKDKQIYADNA-R--MNF-HLG-DVG-------DRIALLR 530 (582)
Q Consensus 465 pl~p~~~k~l~~~~~~--~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~-~--~~f-~~~-~~s-------D~~~~l~ 530 (582)
|++|.++++++.+... .|..+++.|+|+.+..+++++++.+ ....+.. + ..+ ..+ ... .|+-..-
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 565 (702)
T 2p6r_A 487 YIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTAL 565 (702)
T ss_dssp TCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999998 8999999999999887889999887 3222211 1 122 111 011 4555666
Q ss_pred HHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Q 037717 531 VYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFAR 571 (582)
Q Consensus 531 ~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~ 571 (582)
+.++|.+...-...|.++++....++.+.+-..+|...+.+
T Consensus 566 lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~ 606 (702)
T 2p6r_A 566 CLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNR 606 (702)
T ss_dssp HHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHH
Confidence 78899987766789999999888888777766666665544
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.6e-55 Score=500.17 Aligned_cols=498 Identities=15% Similarity=0.114 Sum_probs=361.3
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHH-HhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHH
Q 037717 51 KSTLEMLQEERKTLPIYPFWEELLQA-VSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARV 116 (582)
Q Consensus 51 ~~~~~~~~~~r~~lPi~~~~~~il~~-i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~v 116 (582)
.....+..+.+.-...+++|.+++.+ +.++++++++||||||||+++++++++ |+|++|.+++.++
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~ 88 (720)
T 2zj8_A 9 DERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88 (720)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHH
Confidence 34555666665556889999999998 889999999999999999988877653 9999999999998
Q ss_pred HH--HhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc-----CCCcchhHHHHHHH
Q 037717 117 SQ--EMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ-----ERTLSTDNLFGLLK 188 (582)
Q Consensus 117 a~--~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H-----eR~~~~d~ll~~lk 188 (582)
.. ++|..++..+| ....+.+...+++|+|+|||+|.+.+..++. +.++++|||||+| +|+..++.++..++
T Consensus 89 ~~l~~~g~~v~~~~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~ 167 (720)
T 2zj8_A 89 QDWEKIGLRVAMATG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167 (720)
T ss_dssp GGGGGGTCCEEEECS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB
T ss_pred HHHHhcCCEEEEecC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh
Confidence 52 22333333333 1122222234789999999999999888776 8999999999999 78888888777765
Q ss_pred HHHhhCCCceEEEecccC-ChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhH-------HHHHHHHHHHHHhcCCCC
Q 037717 189 DLINYRPDLKLLISSATL-DAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDY-------IEAAIVTALQIHVNEPTG 260 (582)
Q Consensus 189 ~~~~~~~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~g 260 (582)
+++|+|+||||+ |++.+++||+ ++.+..++++.|+..++...+...+ .......+.+.+ .+++
T Consensus 168 ------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 238 (720)
T 2zj8_A 168 ------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKK 238 (720)
T ss_dssp ------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTC
T ss_pred ------cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCC
Confidence 279999999999 8999999996 5567778888887765433221111 111122222322 2468
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhhhccCC------------CC------------CCeEEEEecCCCCHHHHHHhcCCCCC
Q 037717 261 DILVFLTGQDEIERAEEILKQRTRGLGT------------KI------------AELIICPIYANLPTELQAKIFEPTPE 316 (582)
Q Consensus 261 ~iLVFl~~~~~i~~~~~~L~~~~~~~~~------------~~------------~~~~v~~lh~~l~~~~r~~v~~~~~~ 316 (582)
++||||+++++++.+++.|.+....... .+ -...+.++||+|++++|+.+++.|++
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 9999999999999999999875332100 00 01238899999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChhh
Q 037717 317 RARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLHN 393 (582)
Q Consensus 317 g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~~ 393 (582)
|.++|||||+++++|||+|++++||+.+ ..|| ..| ..|.|.++|.||+|||||.| +|.||+++++..
T Consensus 319 g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 319 GIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp TSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999754 4566 222 35899999999999999998 699999999876
Q ss_pred hhh----hhh-hh-hHhhh-----h--HHHHHHHHhcCC----cc---ccccCC------CCchHHHHHHHHHHHHHcCC
Q 037717 394 YHR----IWM-TI-LCQKY-----N--ELIWKMLSLFSN----VL---VNFDFI------DPPLEEALLKAFELLYALGA 447 (582)
Q Consensus 394 ~~~----~~~-~p-ei~r~-----~--~~~L~l~~l~~~----~~---~~f~~~------~~p~~~~i~~al~~L~~lga 447 (582)
++. ++. .| ++... . ..++.....|.. ++ ..+.|+ ++|..+.+..+++.|...|+
T Consensus 389 ~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 468 (720)
T 2zj8_A 389 PREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEF 468 (720)
T ss_dssp HHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCC
Confidence 433 332 22 22111 1 233344444421 12 122333 44556889999999999999
Q ss_pred Cc-CCC---ccchhchhhhcCCCChHHHHHHHhcccc----cChHHHHHHHHhhccCCCccccChhhHHHHHHHhh---h
Q 037717 448 LN-KAG---QLTRVGRQMAEFPIDPKLSKTIVSLDKY----KCSDEIITIAAMLFVGNSIFYRPKDKQIYADNARM---N 516 (582)
Q Consensus 448 l~-~~~---~lT~lG~~~a~lpl~p~~~k~l~~~~~~----~c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~---~ 516 (582)
|+ .++ .+|++|+.|+++|++|..+++++.+... .|..+++.|+|+++..+++|+++.+.....+.... .
T Consensus 469 i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~ 548 (720)
T 2zj8_A 469 IEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDR 548 (720)
T ss_dssp EEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGG
T ss_pred eeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhcccc
Confidence 98 655 7999999999999999999999999987 89999999999999778899998775544332211 1
Q ss_pred c----cCCC--CC-------cHHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 037717 517 F----HLGD--VG-------DRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGL 568 (582)
Q Consensus 517 f----~~~~--~s-------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~ 568 (582)
+ .... .. .|+-..-+.+.|.+...-...+.++.+....++.+.+-...|...
T Consensus 549 ~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a 613 (720)
T 2zj8_A 549 LYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYS 613 (720)
T ss_dssp CSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHH
Confidence 1 0101 01 344455567888876666677888888777776655544444443
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-40 Score=403.22 Aligned_cols=447 Identities=14% Similarity=0.095 Sum_probs=313.4
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHH-hCCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAV-SGYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVS 117 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i-~~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va 117 (582)
.++.+...+... ..+.|.+++.++ ..+++++|+||||||||+....+++. |+|.+|.+....+.
T Consensus 915 ~~e~l~~~~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~ 993 (1724)
T 4f92_B 915 AFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWY 993 (1724)
T ss_dssp HHHTTTTTTCSB-CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHH
Confidence 344443333333 567888888887 56788999999999999877666543 99999999999999
Q ss_pred HHhCCccCcEEeEEEee---cccCCCCccEEEEChHHHHHHHHcCC---CCCCCCceEeeccc----CCCcchhHHHHHH
Q 037717 118 QEMGVKLGHEVGYSIRF---EDCTSDKTVLKYMTDCMLLREIVIEP---SLESYSVLIVDEAQ----ERTLSTDNLFGLL 187 (582)
Q Consensus 118 ~~~~~~~g~~vgy~v~~---~~~~~~~t~I~~~T~g~Ll~~l~~~~---~l~~~~~vViDE~H----eR~~~~d~ll~~l 187 (582)
+.++..+|..||..... +.....+++|+|||||.+...+.+.. .+.++++||+||+| +|+...+.++..+
T Consensus 994 ~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl 1073 (1724)
T 4f92_B 994 EKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRM 1073 (1724)
T ss_dssp HHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHH
T ss_pred HHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHH
Confidence 88887777777653321 11112457899999999865554322 27899999999999 7888888888888
Q ss_pred HHHHh-hCCCceEEEecccC-ChHHHHhhhCCC--CEEeeC--CceeceeEEEecCCchhHHH---HHHHHH-HHHHhcC
Q 037717 188 KDLIN-YRPDLKLLISSATL-DAEKFSDYFGSA--PIFKIP--GRRYPVELFYTKAPEVDYIE---AAIVTA-LQIHVNE 257 (582)
Q Consensus 188 k~~~~-~~~~~kii~~SAT~-~~~~~~~~f~~~--~v~~i~--gr~~~v~~~~~~~~~~~~~~---~~~~~~-~~i~~~~ 257 (582)
+.+.. ..+++|+|+||||+ |++++++|++.. +++.+. .|+.|++.+....+...... .....+ ..+....
T Consensus 1074 ~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1153 (1724)
T 4f92_B 1074 RYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHS 1153 (1724)
T ss_dssp HHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhc
Confidence 87654 44689999999999 999999999854 344443 45555555543322221111 111111 1222345
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCC-----------------C--------CCeEEEEecCCCCHHHHHHhcC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTK-----------------I--------AELIICPIYANLPTELQAKIFE 312 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~-----------------~--------~~~~v~~lh~~l~~~~r~~v~~ 312 (582)
+++++||||++++.++.++..|...+...... . -..-+..+||||++++|+.|++
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 67899999999999999998886543221100 0 0123778999999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEee
Q 037717 313 PTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLY 389 (582)
Q Consensus 313 ~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~ 389 (582)
.|++|.++|||||+++++|||+|++++|| .....||+... ...|.|..+|.||+|||||.| .|.|+.++
T Consensus 1234 lF~~G~i~VLvaT~tlA~GVnlPa~~VVI----~~~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~ 1305 (1724)
T 4f92_B 1234 LFSSGAIQVVVASRSLCWGMNVAAHLVII----MDTQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMC 1305 (1724)
T ss_dssp HHHHTSBCEEEEEGGGSSSCCCCBSEEEE----ECSEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEE
T ss_pred HHHCCCCeEEEEChHHHcCCCCCccEEEE----ecCccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEe
Confidence 99999999999999999999999999999 34556776543 345889999999999999998 59999998
Q ss_pred Chhhh---hhhhhhhhHhhhh------HHHHHHHHhc-CCc----------------------ccccc-----CCCCchH
Q 037717 390 TLHNY---HRIWMTILCQKYN------ELIWKMLSLF-SNV----------------------LVNFD-----FIDPPLE 432 (582)
Q Consensus 390 ~~~~~---~~~~~~pei~r~~------~~~L~l~~l~-~~~----------------------~~~f~-----~~~~p~~ 432 (582)
..... ..++..|+...+. ..++.....| +.+ ...+. .++....
T Consensus 1306 ~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~ 1385 (1724)
T 4f92_B 1306 QGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLS 1385 (1724)
T ss_dssp EGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHH
T ss_pred cchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHH
Confidence 76543 3332222222111 2222111111 111 00011 1122345
Q ss_pred HHHHHHHHHHHHcCCCc--CCC--ccchhchhhhcCCCChHHHHHHHhcccccC-hHHHHHHHHhhccCCCccccChhhH
Q 037717 433 EALLKAFELLYALGALN--KAG--QLTRVGRQMAEFPIDPKLSKTIVSLDKYKC-SDEIITIAAMLFVGNSIFYRPKDKQ 507 (582)
Q Consensus 433 ~~i~~al~~L~~lgal~--~~~--~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c-~~~~l~i~a~l~~~~~~f~~~~~~~ 507 (582)
+.++++++.|.+.|+|. +++ .+|++|++++.++++|..++++..+..-++ ..++|.++|......++.+++.+..
T Consensus 1386 ~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~ 1465 (1724)
T 4f92_B 1386 ELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDN 1465 (1724)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHH
T ss_pred HHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHH
Confidence 66789999999999995 333 579999999999999999999998877665 4678888887777677777776554
Q ss_pred H
Q 037717 508 I 508 (582)
Q Consensus 508 ~ 508 (582)
.
T Consensus 1466 ~ 1466 (1724)
T 4f92_B 1466 L 1466 (1724)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.9e-40 Score=400.38 Aligned_cols=434 Identities=16% Similarity=0.149 Sum_probs=301.4
Q ss_pred ChHHHHHHHHH-HhCCCeEEEECCCCCchhchHhhhhcc-----------------------chHHHHHHHHHHHHHHhC
Q 037717 66 IYPFWEELLQA-VSGYPVLAIVGETGSGKTTQIPQYLYE-----------------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 66 i~~~~~~il~~-i~~~~~viv~a~TGSGKTt~ip~~ll~-----------------------P~r~~a~~~a~~va~~~~ 121 (582)
..+.|.+++.. +.++++++|+||||||||..+...+++ |.|++|.++...+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 45678887765 567899999999999999654433321 999999999998877664
Q ss_pred CccCcEEeEEEeecccCC----CCccEEEEChHHHHHHHHcCC---CCCCCCceEeeccc----CCCcchhHHHHHHHHH
Q 037717 122 VKLGHEVGYSIRFEDCTS----DKTVLKYMTDCMLLREIVIEP---SLESYSVLIVDEAQ----ERTLSTDNLFGLLKDL 190 (582)
Q Consensus 122 ~~~g~~vgy~v~~~~~~~----~~t~I~~~T~g~Ll~~l~~~~---~l~~~~~vViDE~H----eR~~~~d~ll~~lk~~ 190 (582)
. +|..|+... ++.... ..++|+|+||+.+...+.+.. .++++++|||||+| +||...+.++..+++.
T Consensus 160 ~-~gi~V~~~t-Gd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 160 T-YGITVAELT-GDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp T-TTCCEEECC-SSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHH
T ss_pred h-CCCEEEEEE-CCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHH
Confidence 2 344454221 222221 357999999999754433322 27899999999999 8999999888877665
Q ss_pred H-hhCCCceEEEecccC-ChHHHHhhhCCCC---EEeeCC--ceeceeEEEecCCchhHHH--HHHHH-HHHH-HhcCCC
Q 037717 191 I-NYRPDLKLLISSATL-DAEKFSDYFGSAP---IFKIPG--RRYPVELFYTKAPEVDYIE--AAIVT-ALQI-HVNEPT 259 (582)
Q Consensus 191 ~-~~~~~~kii~~SAT~-~~~~~~~~f~~~~---v~~i~g--r~~~v~~~~~~~~~~~~~~--~~~~~-~~~i-~~~~~~ 259 (582)
. ...+++|+|+||||+ |++++++|++..+ ++.+.. |+.|++.++.......... ..+.. +... .....+
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK 317 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcC
Confidence 4 356789999999999 9999999998643 344444 4555555554332221111 11111 1121 222345
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccCCC----------------------------CCCeEEEEecCCCCHHHHHHhc
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLGTK----------------------------IAELIICPIYANLPTELQAKIF 311 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~----------------------------~~~~~v~~lh~~l~~~~r~~v~ 311 (582)
+++||||+++++++.+++.|.+.....+.. .-..-+..+||||++++|..|+
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE 397 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE 397 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHH
Confidence 799999999999999999987654221100 0012267889999999999999
Q ss_pred CCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEe
Q 037717 312 EPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRL 388 (582)
Q Consensus 312 ~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L 388 (582)
+.|++|.++|||||+++|+|||+|++++|| .....||+..|. ..|+|.++|.||+|||||.| .|.++.+
T Consensus 398 ~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI----~~~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 398 DLFADKHIQVLVSTATLAWGVNLPAHTVII----KGTQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp HHHHTTCCCEEEECHHHHHHSCCCBSEEEE----ECCEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEEcchhHhhCCCCCceEEE----eCCEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999 556789987763 35799999999999999998 5999999
Q ss_pred eChhhh---hhhhhh--h-hHhhhh---HHHHHHHHhc-CC----------------------cccc--------ccCCC
Q 037717 389 YTLHNY---HRIWMT--I-LCQKYN---ELIWKMLSLF-SN----------------------VLVN--------FDFID 428 (582)
Q Consensus 389 ~~~~~~---~~~~~~--p-ei~r~~---~~~L~l~~l~-~~----------------------~~~~--------f~~~~ 428 (582)
.++.+. ..++.. | |-.... ..+..-..+| +. .... .+.++
T Consensus 470 ~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~ 549 (1724)
T 4f92_B 470 TSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLD 549 (1724)
T ss_dssp EESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCH
T ss_pred ecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHH
Confidence 876543 222221 1 000000 1111111111 10 0111 12233
Q ss_pred CchHHHHHHHHHHHHHcCCCcC---CC--ccchhchhhhcCCCChHHHHHHHhcccccC-hHHHHHHHHhhccCCCcccc
Q 037717 429 PPLEEALLKAFELLYALGALNK---AG--QLTRVGRQMAEFPIDPKLSKTIVSLDKYKC-SDEIITIAAMLFVGNSIFYR 502 (582)
Q Consensus 429 ~p~~~~i~~al~~L~~lgal~~---~~--~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c-~~~~l~i~a~l~~~~~~f~~ 502 (582)
....+.+..++..|.+.|+|.- +| .+|++|++||+++++|..++.+.....-.+ ..+++.+.|+......+.++
T Consensus 550 ~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R 629 (1724)
T 4f92_B 550 QRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR 629 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcC
Confidence 3345668899999999999942 22 689999999999999999999998877654 45788888888877777777
Q ss_pred ChhhHHH
Q 037717 503 PKDKQIY 509 (582)
Q Consensus 503 ~~~~~~~ 509 (582)
..++...
T Consensus 630 ~~E~~~l 636 (1724)
T 4f92_B 630 EEEKLEL 636 (1724)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-40 Score=386.34 Aligned_cols=318 Identities=15% Similarity=0.138 Sum_probs=240.4
Q ss_pred HhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 60 ERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 60 ~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
....++++++|.+++.++..+++++++||||||||++...+++. |+|++|.|.+.++...++ .
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~ 253 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----D 253 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----S
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----C
Confidence 34566789999999999999999999999999999877666553 999999999999998876 3
Q ss_pred EeEEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 128 VGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 128 vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
+|+ +.++.....+++|+|+|||+|++++..+.. +.++++||||||| +..+.+.-..+-..+....+++++|+||||+
T Consensus 254 Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 254 VGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp EEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred ccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCC
Confidence 555 345556677899999999999999988876 8899999999999 4434333222222223345789999999999
Q ss_pred -ChHHHHhhhCC-----CCEEeeCCceeceeEEEecCCch---------------hHH----------------------
Q 037717 207 -DAEKFSDYFGS-----APIFKIPGRRYPVELFYTKAPEV---------------DYI---------------------- 243 (582)
Q Consensus 207 -~~~~~~~~f~~-----~~v~~i~gr~~~v~~~~~~~~~~---------------~~~---------------------- 243 (582)
+...+++|++. +.++..+.+..|+..++...... .+.
T Consensus 332 pn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 411 (1108)
T 3l9o_A 332 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGK 411 (1108)
T ss_dssp SSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------
T ss_pred CCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccc
Confidence 88889988752 45666777888877665322100 000
Q ss_pred --------------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhcc---------------------CC
Q 037717 244 --------------EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGL---------------------GT 288 (582)
Q Consensus 244 --------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~---------------------~~ 288 (582)
...+..++..+.....+++||||+++++++.++..|....... ..
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 491 (1108)
T 3l9o_A 412 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 491 (1108)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTT
T ss_pred cccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhh
Confidence 2233344555555667899999999999999999885421110 00
Q ss_pred CCCC---------eEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCccc
Q 037717 289 KIAE---------LIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMES 359 (582)
Q Consensus 289 ~~~~---------~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~ 359 (582)
.++. .-+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+... .||+.
T Consensus 492 ~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~----- 562 (1108)
T 3l9o_A 492 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ----- 562 (1108)
T ss_dssp CCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS-----
T ss_pred hhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc-----
Confidence 0000 11789999999999999999999999999999999999999999999995543 45433
Q ss_pred ccccccCHHhHHHHhcCCCCCC---CCeEEEeeChhhh
Q 037717 360 LLVNPISKASANQRTGLSERTG---PGKCFRLYTLHNY 394 (582)
Q Consensus 360 l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~~~ 394 (582)
...|+|.++|.||+|||||.| .|.||.++++...
T Consensus 563 -~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 563 -QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp -CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred -ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 235889999999999999999 6999999987643
No 8
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.7e-40 Score=365.79 Aligned_cols=298 Identities=21% Similarity=0.234 Sum_probs=226.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCc
Q 037717 56 MLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 56 ~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
+..+.|..+|++.+|++++.++.++++++++||||||||+++++++++ |+|++|.++++++++.++..++.
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~ 287 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNI 287 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEE
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeE
Confidence 346678899999999999999999999999999999999999988775 99999999999999999888776
Q ss_pred EEeEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 127 EVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 127 ~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.+|+.. ...+++|+|+|||+|++. ....+.++++|||||||+++...+..+..+...+...+...+++||||+
T Consensus 288 ~vG~~~-----~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 288 RTGVRT-----ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp ECSSCE-----ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred EECcEe-----ccCCCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCC
Confidence 666533 356789999999998421 1223778999999999999888777777776666554555578889999
Q ss_pred ChHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhcc
Q 037717 207 DAEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGL 286 (582)
Q Consensus 207 ~~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~ 286 (582)
+.. +. . ..+ ...++...+... ..+..... . .....++++||||+++++++.+++.|.+
T Consensus 361 ~~~-i~--~-~~p------~i~~v~~~~~~~--i~~~~~~~----~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~----- 418 (666)
T 3o8b_A 361 PGS-VT--V-PHP------NIEEVALSNTGE--IPFYGKAI----P-IEAIRGGRHLIFCHSKKKCDELAAKLSG----- 418 (666)
T ss_dssp TTC-CC--C-CCT------TEEEEECBSCSS--EEETTEEE----C-GGGSSSSEEEEECSCHHHHHHHHHHHHT-----
T ss_pred Ccc-cc--c-CCc------ceEEEeecccch--hHHHHhhh----h-hhhccCCcEEEEeCCHHHHHHHHHHHHh-----
Confidence 432 10 0 111 111111111110 00000000 0 1122468999999999999999999987
Q ss_pred CCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCccccee----ecCCCCcccccc
Q 037717 287 GTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKS----YNPKTGMESLLV 362 (582)
Q Consensus 287 ~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~----yd~~~~~~~l~~ 362 (582)
.++.+..+||+|++++ ++++..+||||||++|+||||| |++|||+|+.+... |||..++.. ..
T Consensus 419 ----~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~ 485 (666)
T 3o8b_A 419 ----LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TT 485 (666)
T ss_dssp ----TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EE
T ss_pred ----CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-cc
Confidence 3678999999999875 3456679999999999999998 99999999988664 556677654 36
Q ss_pred cccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 363 NPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 363 ~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
.|.|.++|.||+|||||.++|. |.||++.++..
T Consensus 486 ~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EECBHHHHHHHHTTBCSSSCEE-EEESCCCCBCS
T ss_pred CcCCHHHHHHHhccCCCCCCCE-EEEEecchhhc
Confidence 8999999999999999966799 99999877654
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=342.12 Aligned_cols=314 Identities=12% Similarity=0.142 Sum_probs=217.5
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHH
Q 037717 51 KSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAAR 115 (582)
Q Consensus 51 ~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~ 115 (582)
.....+......-.+.+++|.+++..+..+++++++||||||||+++..++++ |++.++.+++.+
T Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 127 (414)
T 3eiq_A 48 SESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKV 127 (414)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHH
Confidence 34455555666778899999999999999999999999999999776555432 999999999888
Q ss_pred HHHHhCCccCcEEeEEEeecc-------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHH
Q 037717 116 VSQEMGVKLGHEVGYSIRFED-------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLL 187 (582)
Q Consensus 116 va~~~~~~~g~~vgy~v~~~~-------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~l 187 (582)
+.... ...+..++....... .....++|+|+||++|++.+..+.. +.++++||+||||+. .+.++...+.
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~ 205 (414)
T 3eiq_A 128 VMALG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM-LSRGFKDQIY 205 (414)
T ss_dssp HHHHG-GGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-HHTTTHHHHH
T ss_pred HHHHh-cccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh-hccCcHHHHH
Confidence 77643 233444433322221 1225689999999999999987765 888999999999942 2222222223
Q ss_pred HHHHhhCCCceEEEecccCCh--HHHHh-hhCCCCEEeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCC
Q 037717 188 KDLINYRPDLKLLISSATLDA--EKFSD-YFGSAPIFKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGD 261 (582)
Q Consensus 188 k~~~~~~~~~kii~~SAT~~~--~~~~~-~f~~~~v~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 261 (582)
+.+...+++.++|+||||+.. ..+.. ++.+...+.+.... ..+...+......+. ....+..+....+.++
T Consensus 206 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 282 (414)
T 3eiq_A 206 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQ 282 (414)
T ss_dssp HHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSS
T ss_pred HHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCc
Confidence 333335578999999999943 33333 44433333332221 123333443333322 2234445555566789
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEE
Q 037717 262 ILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVI 341 (582)
Q Consensus 262 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VI 341 (582)
+||||+++++++.+++.|.+ .++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHA---------RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHT---------TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred EEEEeCCHHHHHHHHHHHHh---------cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 99999999999999999987 367789999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
+.+. |.|..+|.||+|||||.| +|.||.++++.+...
T Consensus 354 ~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 354 NYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp ESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred EeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 5443 457789999999999997 499999999876654
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.3e-37 Score=330.82 Aligned_cols=319 Identities=14% Similarity=0.121 Sum_probs=227.3
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCC--CeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGY--PVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAA 114 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~--~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~ 114 (582)
....+......-...+++|.+++..+..+ ++++++||||||||.....++++ |++.++.+++.
T Consensus 34 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 113 (412)
T 3fht_A 34 PQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK 113 (412)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHH
Confidence 33444444445556788999999999886 89999999999999765444331 99999999988
Q ss_pred HHHHHhCCccCcEEeEEEeeccc---CCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFEDC---TSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~~---~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
++.+......+..+++....... .....+|+|+||++|++.+..... +.++++||+||||.......+.......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~ 193 (412)
T 3fht_A 114 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193 (412)
T ss_dssp HHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHH
T ss_pred HHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHH
Confidence 87776544345556665443322 234579999999999998866443 6899999999999322111121111122
Q ss_pred HHhhCCCceEEEecccCCh--HHHHh-hhCCCCEEeeCCc---eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 190 LINYRPDLKLLISSATLDA--EKFSD-YFGSAPIFKIPGR---RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 190 ~~~~~~~~kii~~SAT~~~--~~~~~-~f~~~~v~~i~gr---~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
.....++.++++||||+.. ..+.. ++.+...+.+... ...+...+...+..+. ....+..+......+++|
T Consensus 194 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~l 270 (412)
T 3fht_A 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQALCNLYGAITIAQAM 270 (412)
T ss_dssp HHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH---HHHHHHHHHHHHSSSEEE
T ss_pred HhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH---HHHHHHHHHhhcCCCCEE
Confidence 2224567899999999944 34444 4443333333322 2233444444333322 223333444444568999
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||+++++++.+++.|.+ .+..+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+.
T Consensus 271 vf~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 341 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSK---------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 341 (412)
T ss_dssp EECSSHHHHHHHHHHHHH---------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEES
T ss_pred EEeCCHHHHHHHHHHHHh---------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEE
Confidence 999999999999999987 35678899999999999999999999999999999999999999999999977
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
+++....+ +.|..+|.||+|||||.|. |.|+.+++....
T Consensus 342 ~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 342 DLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 381 (412)
T ss_dssp SCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred CCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChhh
Confidence 66443322 3678899999999999886 999999987653
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.2e-37 Score=326.77 Aligned_cols=317 Identities=15% Similarity=0.130 Sum_probs=226.5
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhCC--CeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAVSGY--PVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAAR 115 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i~~~--~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~ 115 (582)
...+......-...+++|.+++..+..+ +++++++|||||||+++..+++. |++.++.+++.+
T Consensus 15 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 15 ELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHH
Confidence 3444444455567889999999999887 89999999999999765544332 999999999887
Q ss_pred HHHHhCCccCcEEeEEEe--ecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHh
Q 037717 116 VSQEMGVKLGHEVGYSIR--FEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLIN 192 (582)
Q Consensus 116 va~~~~~~~g~~vgy~v~--~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~ 192 (582)
+... +...+..++.... .......+.+|+|+||+.|++.+..... +.++++||+||||.......+.....+....
T Consensus 95 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~ 173 (395)
T 3pey_A 95 VQEM-GKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRF 173 (395)
T ss_dssp HHHH-TTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHH-hcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHh
Confidence 7654 3333333333221 1222334689999999999998876654 8999999999999433223332222222223
Q ss_pred hCCCceEEEecccCCh--HHHHhhh-CCCCEEeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEc
Q 037717 193 YRPDLKLLISSATLDA--EKFSDYF-GSAPIFKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFL 266 (582)
Q Consensus 193 ~~~~~kii~~SAT~~~--~~~~~~f-~~~~v~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl 266 (582)
..++.++++||||+.. ..+...+ .....+.+.... ..+...+....... .....+..+....+.+++||||
T Consensus 174 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~ 250 (395)
T 3pey_A 174 LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEA---DKFDVLTELYGLMTIGSSIIFV 250 (395)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHH---HHHHHHHHHHTTTTSSEEEEEC
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchH---HHHHHHHHHHHhccCCCEEEEe
Confidence 4567999999999943 4454444 333333333222 22333343332222 2223334444445568999999
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 267 TGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 267 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
+++++++.+++.|.+ .+..+..+||++++++|+++++.|++|..+|||||+++++|+|+|++++||+.+.+
T Consensus 251 ~~~~~~~~l~~~l~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 251 ATKKTANVLYGKLKS---------EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp SCHHHHHHHHHHHHH---------TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CCHHHHHHHHHHHHh---------cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCC
Confidence 999999999999987 35678899999999999999999999999999999999999999999999966543
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
. +...+.|..+|.||+|||||.|. |.|+.+++..+.
T Consensus 322 ~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 322 T------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp B------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred C------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 3 23345799999999999999986 999999986543
No 12
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.9e-38 Score=340.70 Aligned_cols=281 Identities=17% Similarity=0.171 Sum_probs=205.6
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecc-cC
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED-CT 138 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~-~~ 138 (582)
...++.++++++++||||||||++....+++ |+|++|.+++.++. |..+++...... ..
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~ 86 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREH 86 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCC
Confidence 3556788999999999999999875444332 99999999988764 334444332211 23
Q ss_pred CCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhh-CC
Q 037717 139 SDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYF-GS 217 (582)
Q Consensus 139 ~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f-~~ 217 (582)
.+...+.++|.+.+.+.+..++.+.++++|||||||+++...++.++.++.... .++.++|+||||++.+. ..+. ..
T Consensus 87 t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~~ 164 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDSN 164 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCCS
T ss_pred CCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccCC
Confidence 456789999999999999988889999999999999998888888887776543 46899999999995331 1221 23
Q ss_pred CCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEE
Q 037717 218 APIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICP 297 (582)
Q Consensus 218 ~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 297 (582)
.|+..+.. ..|.. ...... .... ..++++||||+++++++.+++.|.. .++.+..
T Consensus 165 ~pi~~~~~-~~~~~------~~~~~~--------~~l~-~~~~~~LVF~~s~~~~~~l~~~L~~---------~g~~v~~ 219 (459)
T 2z83_A 165 APIHDLQD-EIPDR------AWSSGY--------EWIT-EYAGKTVWFVASVKMGNEIAMCLQR---------AGKKVIQ 219 (459)
T ss_dssp SCEEEEEC-CCCSS------CCSSCC--------HHHH-HCCSCEEEECSCHHHHHHHHHHHHH---------TTCCEEE
T ss_pred CCeEEecc-cCCcc------hhHHHH--------HHHH-hcCCCEEEEeCChHHHHHHHHHHHh---------cCCcEEe
Confidence 44443221 11110 000000 0011 1268999999999999999999987 3677889
Q ss_pred ecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeec--CCCCcccccccccCHHhHHHHhc
Q 037717 298 IYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYN--PKTGMESLLVNPISKASANQRTG 375 (582)
Q Consensus 298 lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd--~~~~~~~l~~~~~S~~~~~QR~G 375 (582)
+||. +|+++++.|++|.++|||||+++|+|||||+ ++|||+|+.+...|+ ....+..+...|.|+++|.||+|
T Consensus 220 lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~G 294 (459)
T 2z83_A 220 LNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRG 294 (459)
T ss_dssp ESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHT
T ss_pred cCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcc
Confidence 9994 7889999999999999999999999999999 999999988877765 33333333458999999999999
Q ss_pred CCCCCC--CCeEEEeeChh
Q 037717 376 LSERTG--PGKCFRLYTLH 392 (582)
Q Consensus 376 RaGR~~--~G~~~~L~~~~ 392 (582)
||||.| +|.||.+++..
T Consensus 295 RaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 295 RVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp TSSCCTTCCCEEEEECSCC
T ss_pred ccCCCCCCCCeEEEEEccc
Confidence 999998 79999999886
No 13
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.9e-38 Score=342.48 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=215.5
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-c------------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-E------------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-~------------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
+..|+. +.|...+.++++++++||||||||+++...++ . |+|++|.+++..+. |..+
T Consensus 4 q~~~iq---~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v 73 (451)
T 2jlq_A 4 MGEPDY---EVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR-------GLPI 73 (451)
T ss_dssp CCSCCC---CCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCE
T ss_pred CCCCcH---HHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-------Ccee
Confidence 445652 23444455677779999999999975322221 1 99999999887652 4456
Q ss_pred eEEEeecc-cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCC
Q 037717 129 GYSIRFED-CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLD 207 (582)
Q Consensus 129 gy~v~~~~-~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~ 207 (582)
+|..+... ...+++.|.++|+|.|.+.+...+.+.++++|||||||+++...+.++..+... ...++.++|+||||++
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~ 152 (451)
T 2jlq_A 74 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPP 152 (451)
T ss_dssp EECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCT
T ss_pred eeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCC
Confidence 66554332 334567899999999999999888899999999999998866666666655432 2456899999999996
Q ss_pred hHHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccC
Q 037717 208 AEKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLG 287 (582)
Q Consensus 208 ~~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~ 287 (582)
.+....++++.+++.+. +..|... |.. . ..... ...+++||||+++++++.+++.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~-~~~p~~~-~~~--~-----------~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~------ 210 (451)
T 2jlq_A 153 GSTDPFPQSNSPIEDIE-REIPERS-WNT--G-----------FDWIT-DYQGKTVWFVPSIKAGNDIANCLRK------ 210 (451)
T ss_dssp TCCCSSCCCSSCEEEEE-CCCCSSC-CSS--S-----------CHHHH-HCCSCEEEECSSHHHHHHHHHHHHT------
T ss_pred ccchhhhcCCCceEecC-ccCCchh-hHH--H-----------HHHHH-hCCCCEEEEcCCHHHHHHHHHHHHH------
Confidence 65544455555555443 2233111 110 0 01111 1367999999999999999999976
Q ss_pred CCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccc---cc
Q 037717 288 TKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLV---NP 364 (582)
Q Consensus 288 ~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~---~~ 364 (582)
.++.+..+||.+ ++++++.|++|+++|||||+++|+|||+|+ ++|||+|+.+...|| ..+...+.. .|
T Consensus 211 ---~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p 281 (451)
T 2jlq_A 211 ---SGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIP 281 (451)
T ss_dssp ---TTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEE
T ss_pred ---cCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeeccccc
Confidence 356788999975 467899999999999999999999999999 999999999999998 555566665 89
Q ss_pred cCHHhHHHHhcCCCCCC--CCeEEEeeCh
Q 037717 365 ISKASANQRTGLSERTG--PGKCFRLYTL 391 (582)
Q Consensus 365 ~S~~~~~QR~GRaGR~~--~G~~~~L~~~ 391 (582)
.|.++|.||+|||||.| +|.||.++..
T Consensus 282 ~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 282 VTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999 6899888754
No 14
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.1e-38 Score=369.97 Aligned_cols=359 Identities=14% Similarity=0.144 Sum_probs=246.7
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhh--hcc--------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQY--LYE--------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~--ll~--------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
..++..++|.+++.++.++++++++||||||||+. +|.. +.. |++.++.+++.++.+.++ |..+|
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~ 112 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIG 112 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEE
Confidence 45668999999999999999999999999999953 2222 111 999999999999887652 23344
Q ss_pred EEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC-C
Q 037717 130 YSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL-D 207 (582)
Q Consensus 130 y~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~-~ 207 (582)
.. .++......++|+|+||++|++++..... +.++++||||||| +..+.+....+...+....+++++|+||||+ |
T Consensus 113 ~l-~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 113 LI-TGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPN 190 (997)
T ss_dssp EE-CSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTT
T ss_pred EE-eCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCC
Confidence 32 22334556789999999999999877665 8899999999999 2222221111112222345789999999999 9
Q ss_pred hHHHHhhhC-----CCCEEeeCCceeceeEEEecCCc-------------hhHH--------------------------
Q 037717 208 AEKFSDYFG-----SAPIFKIPGRRYPVELFYTKAPE-------------VDYI-------------------------- 243 (582)
Q Consensus 208 ~~~~~~~f~-----~~~v~~i~gr~~~v~~~~~~~~~-------------~~~~-------------------------- 243 (582)
...|++|++ ...++..+++..|+..++..... ..+.
T Consensus 191 ~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (997)
T 4a4z_A 191 TYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 270 (997)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------
T ss_pred hHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccc
Confidence 999999996 33467778888888766532100 0000
Q ss_pred --------------------------------------------------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Q 037717 244 --------------------------------------------------EAAIVTALQIHVNEPTGDILVFLTGQDEIE 273 (582)
Q Consensus 244 --------------------------------------------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 273 (582)
...+..++........+++|||++++++++
T Consensus 271 ~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e 350 (997)
T 4a4z_A 271 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCE 350 (997)
T ss_dssp ----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHH
Confidence 011234444555556689999999999999
Q ss_pred HHHHHHHHhhh------------------ccC---CCC---------CCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEE
Q 037717 274 RAEEILKQRTR------------------GLG---TKI---------AELIICPIYANLPTELQAKIFEPTPERARKVVL 323 (582)
Q Consensus 274 ~~~~~L~~~~~------------------~~~---~~~---------~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViv 323 (582)
.++..|.+... .+. ..+ ....+.++||+|++.+|+.+++.|++|.++|||
T Consensus 351 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLv 430 (997)
T 4a4z_A 351 EYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF 430 (997)
T ss_dssp HHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 99988854100 000 000 011378899999999999999999999999999
Q ss_pred eCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---CCeEEEeeChh-----hhh
Q 037717 324 ATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG---PGKCFRLYTLH-----NYH 395 (582)
Q Consensus 324 aT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~L~~~~-----~~~ 395 (582)
||+++++|||+|++.+|+ .+..+ ||+. ...|+|..+|.||+|||||.| .|.||.++... .+.
T Consensus 431 AT~~~a~GIDiP~~~VVi-~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 431 ATETFAMGLNLPTRTVIF-SSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp ECTHHHHSCCCCCSEEEE-SCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred EchHhhCCCCCCCceEEE-ecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 999999999999955555 44443 5543 235899999999999999988 69999999532 223
Q ss_pred hhhh-hhhHhhhh-----HHHHH---HHHhcCCccccccCCCCchHHHH
Q 037717 396 RIWM-TILCQKYN-----ELIWK---MLSLFSNVLVNFDFIDPPLEEAL 435 (582)
Q Consensus 396 ~~~~-~pei~r~~-----~~~L~---l~~l~~~~~~~f~~~~~p~~~~i 435 (582)
.++. .|+.+++. ++++. +...+++++..+.|.+.+....+
T Consensus 501 ~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~ 549 (997)
T 4a4z_A 501 EVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQ 549 (997)
T ss_dssp HHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHH
T ss_pred HHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhh
Confidence 3322 35554442 33333 33344455555666555544333
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.3e-36 Score=322.74 Aligned_cols=305 Identities=19% Similarity=0.209 Sum_probs=216.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhh--hc----------------cchHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQY--LY----------------EPRWVAAMSVA 113 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~--ll----------------~P~r~~a~~~a 113 (582)
..+......--..+++|.+++..+.++++++++||||||||.. +|.+ ++ -|+|.+|.|++
T Consensus 67 l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~ 146 (434)
T 2db3_A 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIF 146 (434)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHH
Confidence 3333333344446788999999999999999999999999953 3432 11 19999999998
Q ss_pred HHHHHHhCCccCcEEeEEEeec------ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHH
Q 037717 114 ARVSQEMGVKLGHEVGYSIRFE------DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 114 ~~va~~~~~~~g~~vgy~v~~~------~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
..+.+... ..+..++....+. .....+++|+|+|||+|++.+..... +.++++||+|||| +..+..+.-.
T Consensus 147 ~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~- 223 (434)
T 2db3_A 147 NEARKFAF-ESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSED- 223 (434)
T ss_dssp HHHHHHTT-TSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHH-
T ss_pred HHHHHHhc-cCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHH-
Confidence 87765432 2222222211111 11235689999999999999876654 8999999999999 4444433222
Q ss_pred HHHHHh---hCCCceEEEecccCC--hHHHHhhhCCCCEEeeCCc----eeceeEEEecCCchhHHHHHHHHHHHHHhcC
Q 037717 187 LKDLIN---YRPDLKLLISSATLD--AEKFSDYFGSAPIFKIPGR----RYPVELFYTKAPEVDYIEAAIVTALQIHVNE 257 (582)
Q Consensus 187 lk~~~~---~~~~~kii~~SAT~~--~~~~~~~f~~~~v~~i~gr----~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~ 257 (582)
++.++. .+++.+++++|||+. ...++..+-..+++...+. ...+...+......+... .++.+....
T Consensus 224 ~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~----~l~~~l~~~ 299 (434)
T 2db3_A 224 MRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS----KLIEILSEQ 299 (434)
T ss_dssp HHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHH----HHHHHHHHC
T ss_pred HHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHH----HHHHHHHhC
Confidence 233332 357899999999993 4455554433444332221 233444444333333222 233333333
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCe
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGI 337 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v 337 (582)
. +++||||+++++++.+++.|.+ .++.+..+||++++++|+++++.|++|..+|||||+++++|+|+|++
T Consensus 300 ~-~~~lVF~~t~~~a~~l~~~L~~---------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 300 A-DGTIVFVETKRGADFLASFLSE---------KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp C-TTEEEECSSHHHHHHHHHHHHH---------TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred C-CCEEEEEeCcHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 3 3499999999999999999987 46779999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 338 KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 338 ~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
++||++++ |.|..+|.||+||+||.|. |.|+.+|+.+.
T Consensus 370 ~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 370 KHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp CEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred CEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 99995433 4578899999999999985 99999999543
No 16
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-37 Score=356.97 Aligned_cols=310 Identities=17% Similarity=0.175 Sum_probs=232.4
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCccCcEE
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKLGHEV 128 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~g~~v 128 (582)
...+..+++|.+++.++..+++++|+||||||||+....+++. |++.++.|.+.++....+ .+
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~v 156 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DV 156 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC-----CE
Confidence 3456689999999999999999999999999999765443332 999999999999988876 34
Q ss_pred eEEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeeccc-----CCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 129 GYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQ-----ERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 129 gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~H-----eR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
|. +.++....++++|+|+||++|.+++..+.. +.++++||||||| +|+...+.++.. ..++.++|+|
T Consensus 157 gl-ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------l~~~~~il~L 229 (1010)
T 2xgj_A 157 GL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------LPDKVRYVFL 229 (1010)
T ss_dssp EE-ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH------SCTTCEEEEE
T ss_pred EE-EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh------cCCCCeEEEE
Confidence 44 233444556789999999999998876654 8999999999999 345444433322 3468999999
Q ss_pred cccC-ChHHHHhhhC-----CCCEEeeCCceeceeEEEecCCc----------h-----hHH------------------
Q 037717 203 SATL-DAEKFSDYFG-----SAPIFKIPGRRYPVELFYTKAPE----------V-----DYI------------------ 243 (582)
Q Consensus 203 SAT~-~~~~~~~~f~-----~~~v~~i~gr~~~v~~~~~~~~~----------~-----~~~------------------ 243 (582)
|||+ |...|++|++ .+.++..+++..|+..++...+. . .+.
T Consensus 230 SATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 309 (1010)
T 2xgj_A 230 SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD 309 (1010)
T ss_dssp ECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------
T ss_pred cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccc
Confidence 9999 8999999985 34566667787787766543210 0 000
Q ss_pred ------------------HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhh------------------ccC
Q 037717 244 ------------------EAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTR------------------GLG 287 (582)
Q Consensus 244 ------------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~------------------~~~ 287 (582)
...+..++........+++|||+++++.++.+++.|..... .+.
T Consensus 310 ~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 389 (1010)
T 2xgj_A 310 SRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 389 (1010)
T ss_dssp -------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred cccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcc
Confidence 11122233333344456899999999999999988854100 000
Q ss_pred CC---CC---------CeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCC
Q 037717 288 TK---IA---------ELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKT 355 (582)
Q Consensus 288 ~~---~~---------~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~ 355 (582)
.. ++ ...+..+||+|++++|+.+++.|++|.++|||||+++++|||+|++++||+. ...||...
T Consensus 390 ~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~ 465 (1010)
T 2xgj_A 390 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ 465 (1010)
T ss_dssp GGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC
T ss_pred hhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC
Confidence 00 00 1127889999999999999999999999999999999999999999999952 33466432
Q ss_pred CcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChh
Q 037717 356 GMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLH 392 (582)
Q Consensus 356 ~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~ 392 (582)
..|.|.++|.||+|||||.|. |.||.++++.
T Consensus 466 ------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp ------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 358899999999999999984 9999999864
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-36 Score=314.83 Aligned_cols=310 Identities=19% Similarity=0.218 Sum_probs=224.9
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCC-CeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGY-PVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARV 116 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~-~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~v 116 (582)
....+..+...--..+++|.+++..+.++ +++++.+|||||||++...+++. |++.++.+++.++
T Consensus 15 ~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 94 (367)
T 1hv8_A 15 DNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEI 94 (367)
T ss_dssp HHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHH
Confidence 33344444455556789999999888777 79999999999999765544332 9999999999998
Q ss_pred HHHhCCccCcEEeEEEeecc-----cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 117 SQEMGVKLGHEVGYSIRFED-----CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~~-----~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
....+.. +..++....... ....+.+|+|+||+.|++.+..... +.++++||+||||.. ....+...+.+..
T Consensus 95 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~~~ 172 (367)
T 1hv8_A 95 ESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNMGFIKDVEKIL 172 (367)
T ss_dssp HHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTTTTHHHHHHHH
T ss_pred HHHhCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhhchHHHHHHHH
Confidence 8876532 222222111111 0112678999999999998877655 899999999999942 1222222222222
Q ss_pred HhhCCCceEEEecccCChH---HHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcC
Q 037717 191 INYRPDLKLLISSATLDAE---KFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLT 267 (582)
Q Consensus 191 ~~~~~~~kii~~SAT~~~~---~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~ 267 (582)
....++.++++||||+..+ .+..|+++...+.. ....++...|......+.... +..+.. ..++++||||+
T Consensus 173 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~ 246 (367)
T 1hv8_A 173 NACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA-KINANIEQSYVEVNENERFEA----LCRLLK-NKEFYGLVFCK 246 (367)
T ss_dssp HTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC-CSSSSSEEEEEECCGGGHHHH----HHHHHC-STTCCEEEECS
T ss_pred HhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEe-cCCCCceEEEEEeChHHHHHH----HHHHHh-cCCCcEEEEEC
Confidence 2345789999999999543 34556665433332 223345555554444443332 222222 45688999999
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCccc
Q 037717 268 GQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAK 347 (582)
Q Consensus 268 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k 347 (582)
++++++.+++.|.+ .++.+..+||++++++|+++++.|++|..+|||||+++++|+|+|++++||+.+.
T Consensus 247 ~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~-- 315 (367)
T 1hv8_A 247 TKRDTKELASMLRD---------IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL-- 315 (367)
T ss_dssp SHHHHHHHHHHHHH---------TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC--
T ss_pred CHHHHHHHHHHHHh---------cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC--
Confidence 99999999999987 3567889999999999999999999999999999999999999999999995443
Q ss_pred ceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 348 VKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 348 ~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
|.|..+|.||+|||||.| +|.|+.++++.++..
T Consensus 316 ----------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 316 ----------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp ----------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred ----------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 568889999999999998 699999999887754
No 18
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.5e-37 Score=344.41 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=222.3
Q ss_pred HhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCc
Q 037717 60 ERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGH 126 (582)
Q Consensus 60 ~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~ 126 (582)
.+..+|++.+ . +..+.++++++++||||||||+++...++. |+|++|.|+.+.+. |.
T Consensus 169 ~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 169 ERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred cccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 3788999876 2 888999999999999999999874332221 99999999887654 34
Q ss_pred EEeEEEee-cccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 127 EVGYSIRF-EDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 127 ~vgy~v~~-~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
.++|..+. +....++..+.++|.+.+.+.+..++.+.++++|||||||+++...+..+..++..+. +++.|+|+||||
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~~~q~il~SAT 317 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MGEAAAIFMTAT 317 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSS
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-ccCccEEEEECC
Confidence 56676543 3345667889999999999999988889999999999999887666666776666552 368999999999
Q ss_pred CChHHHHhhhC-CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhh
Q 037717 206 LDAEKFSDYFG-SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTR 284 (582)
Q Consensus 206 ~~~~~~~~~f~-~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~ 284 (582)
++.. ..+++. +.+++.+..+ +.. ..+ . .++..... ..+++||||+++++++.+++.|.+
T Consensus 318 ~~~~-~~~~~~~~~~~~~v~~~-------~~~---~~~-~----~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~--- 377 (618)
T 2whx_A 318 PPGS-TDPFPQSNSPIEDIERE-------IPE---RSW-N----TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK--- 377 (618)
T ss_dssp CTTC-CCSSCCCSSCEEEEECC-------CCS---SCC-S----SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH---
T ss_pred Cchh-hhhhhccCCceeeeccc-------CCH---HHH-H----HHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH---
Confidence 9433 223333 2223333221 111 111 0 01111111 267999999999999999999987
Q ss_pred ccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceee--cCCCCcccccc
Q 037717 285 GLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSY--NPKTGMESLLV 362 (582)
Q Consensus 285 ~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~y--d~~~~~~~l~~ 362 (582)
.++.+..+||. +|+++++.|++|.++|||||+++++|||+| +++|||+|+.+...+ +...++..+..
T Consensus 378 ------~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d 446 (618)
T 2whx_A 378 ------SGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGP 446 (618)
T ss_dssp ------TTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEE
T ss_pred ------cCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEccc
Confidence 35678999984 788899999999999999999999999998 999999999877665 44455667788
Q ss_pred cccCHHhHHHHhcCCCCCC--CCeEEEeeC
Q 037717 363 NPISKASANQRTGLSERTG--PGKCFRLYT 390 (582)
Q Consensus 363 ~~~S~~~~~QR~GRaGR~~--~G~~~~L~~ 390 (582)
.|.|.++|.||+|||||.| +|.||.+++
T Consensus 447 ~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 447 IPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 8999999999999999996 799999998
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.8e-36 Score=317.67 Aligned_cols=309 Identities=15% Similarity=0.182 Sum_probs=219.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~ 118 (582)
..+-.....--..+++|.+++..+.+++++++++|||||||.+....+++ |+|.++.++++.+..
T Consensus 48 l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 48 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH
Confidence 33333333444578899999999999999999999999999655443321 999999999888766
Q ss_pred HhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHH
Q 037717 119 EMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLI 191 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~ 191 (582)
. +...+..++....... ....+.+|+++||+.|++.+..... +.++++||+||||. ..+..+. ..+..+.
T Consensus 128 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~-~~~~~i~ 204 (410)
T 2j0s_A 128 L-GDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFK-EQIYDVY 204 (410)
T ss_dssp H-TTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTH-HHHHHHH
T ss_pred H-hccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhH-HHHHHHH
Confidence 3 3333444443222111 1113568999999999998876654 88899999999993 2222222 2223333
Q ss_pred h-hCCCceEEEecccCChH--HHH-hhhCCCCEEe-eCCc---eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 192 N-YRPDLKLLISSATLDAE--KFS-DYFGSAPIFK-IPGR---RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 192 ~-~~~~~kii~~SAT~~~~--~~~-~~f~~~~v~~-i~gr---~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
. ..++.++++||||+..+ .+. .++. .|+.. +... ...+...+......+.... .+..+......+++|
T Consensus 205 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~l~~~~~~~~~~~~l 280 (410)
T 2j0s_A 205 RYLPPATQVVLISATLPHEILEMTNKFMT-DPIRILVKRDELTLEGIKQFFVAVEREEWKFD---TLCDLYDTLTITQAV 280 (410)
T ss_dssp TTSCTTCEEEEEESCCCHHHHTTGGGTCS-SCEEECCCGGGCSCTTEEEEEEEESSTTHHHH---HHHHHHHHHTSSEEE
T ss_pred HhCccCceEEEEEcCCCHHHHHHHHHHcC-CCEEEEecCccccCCCceEEEEEeCcHHhHHH---HHHHHHHhcCCCcEE
Confidence 3 44678999999999443 333 3443 44432 2222 1223444443333332222 223333333457899
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||+++++++.+++.|.+ .++.+..+||++++++|+++++.|++|..+|||||+++++|+|+|++++||+.
T Consensus 281 Vf~~~~~~~~~l~~~L~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 281 IFCNTKRKVDWLTEKMRE---------ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp EECSSHHHHHHHHHHHHH---------TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred EEEcCHHHHHHHHHHHHh---------CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 999999999999999987 36678899999999999999999999999999999999999999999999954
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
+. |.|..+|.||+||+||.| +|.|+.++++.+...
T Consensus 352 ~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 352 DL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387 (410)
T ss_dssp SC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred CC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHHHH
Confidence 42 567889999999999997 599999999876543
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.7e-35 Score=309.13 Aligned_cols=310 Identities=12% Similarity=0.085 Sum_probs=221.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~ 118 (582)
..+......--..+++|.+++..+..++++++++|||||||.....+++. |++.++.+++..+..
T Consensus 19 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~ 98 (391)
T 1xti_A 19 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 98 (391)
T ss_dssp HHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHH
Confidence 33333434444489999999999999999999999999999654332221 999999999888876
Q ss_pred HhCCccCcEEeEEEeeccc-------CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 119 EMGVKLGHEVGYSIRFEDC-------TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~~~-------~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
......+..++........ .....+|+|+||++|++.+..... +.++++||+||||...-..++.. .+..+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~-~~~~~ 177 (391)
T 1xti_A 99 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR-DVQEI 177 (391)
T ss_dssp HTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHH-HHHHH
T ss_pred HHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHH-HHHHH
Confidence 6543223444432211110 112468999999999998877654 89999999999994432233322 23333
Q ss_pred Hh-hCCCceEEEecccC--ChHHHH-hhhCCCCEEeeCCc----eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCE
Q 037717 191 IN-YRPDLKLLISSATL--DAEKFS-DYFGSAPIFKIPGR----RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDI 262 (582)
Q Consensus 191 ~~-~~~~~kii~~SAT~--~~~~~~-~~f~~~~v~~i~gr----~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i 262 (582)
.. ..++.++++||||+ +...+. .++.....+.+... ...+..++...+..+... .+..+....+.+++
T Consensus 178 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~ 253 (391)
T 1xti_A 178 FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR----KLFDLLDVLEFNQV 253 (391)
T ss_dssp HHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH----HHHHHHHHSCCSEE
T ss_pred HhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH----HHHHHHHhcCCCcE
Confidence 33 34588999999999 334444 45543333333222 122344444433333222 22233333467899
Q ss_pred EEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEe
Q 037717 263 LVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIH 342 (582)
Q Consensus 263 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID 342 (582)
|||++++++++.+++.|.+ .++.+..+||++++++|+++++.|++|..+|||||+++++|+|+|++++||+
T Consensus 254 lvf~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~ 324 (391)
T 1xti_A 254 VIFVKSVQRCIALAQLLVE---------QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324 (391)
T ss_dssp EEECSCHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE
Confidence 9999999999999999987 3567889999999999999999999999999999999999999999999994
Q ss_pred CCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 343 PGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 343 ~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
.+ .|.|..+|.||+||+||.| +|.|+.+++..+..
T Consensus 325 ~~------------------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 360 (391)
T 1xti_A 325 YD------------------MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360 (391)
T ss_dssp SS------------------CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHH
T ss_pred eC------------------CCCCHHHHHHhcccccCCCCceEEEEEEcccchH
Confidence 33 3567889999999999997 59999999976543
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.7e-35 Score=311.23 Aligned_cols=309 Identities=16% Similarity=0.148 Sum_probs=220.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~ 118 (582)
..+......--..+++|.+++..+.+++++++++|||||||+....+++. |++.++.++++++..
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 111 (400)
T 1s2m_A 32 LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRT 111 (400)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHH
Confidence 33333333334488999999999999999999999999999654433221 999999999887766
Q ss_pred HhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHH
Q 037717 119 EMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLI 191 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~ 191 (582)
.. ...|..++....... ......+|+|+||+.|++.+..... +.++++||+|||| +....++ ...+..+.
T Consensus 112 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~-~~~~~~i~ 188 (400)
T 1s2m_A 112 LG-KHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDF-KTIIEQIL 188 (400)
T ss_dssp HT-TTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHH-HHHHHHHH
T ss_pred Hh-cccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-Hhhhhch-HHHHHHHH
Confidence 43 333444433222111 1235679999999999998876644 8999999999999 3333332 23334443
Q ss_pred h-hCCCceEEEecccCChH---HHHhhhCCCCEEeeCCc--eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEE
Q 037717 192 N-YRPDLKLLISSATLDAE---KFSDYFGSAPIFKIPGR--RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVF 265 (582)
Q Consensus 192 ~-~~~~~kii~~SAT~~~~---~~~~~f~~~~v~~i~gr--~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVF 265 (582)
. ..+..++++||||+... .+..++.....+.+... ...+..++.......... .+..+....+.+++|||
T Consensus 189 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~~~~~~~~~~lVf 264 (400)
T 1s2m_A 189 SFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLH----CLNTLFSKLQINQAIIF 264 (400)
T ss_dssp TTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEE
T ss_pred HhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHH----HHHHHHhhcCCCcEEEE
Confidence 3 34578999999999432 23445543322222221 122334444333332222 22333334456899999
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCc
Q 037717 266 LTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGF 345 (582)
Q Consensus 266 l~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~ 345 (582)
|+++++++.+++.|.+. ++.+..+||++++++|+.+++.|++|..+|||||+++++|+|+|++++||+.+
T Consensus 265 ~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~- 334 (400)
T 1s2m_A 265 CNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFD- 334 (400)
T ss_dssp CSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESS-
T ss_pred EecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeC-
Confidence 99999999999999873 56788999999999999999999999999999999999999999999999543
Q ss_pred ccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 346 AKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 346 ~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
.|.|..+|.||+|||||.| +|.|+.+|++.+...
T Consensus 335 -----------------~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 335 -----------------FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp -----------------CCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred -----------------CCCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 2567889999999999997 599999999987654
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.7e-37 Score=333.70 Aligned_cols=319 Identities=14% Similarity=0.128 Sum_probs=113.6
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCC--CeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGY--PVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAA 114 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~--~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~ 114 (582)
....+......-...+++|.+++..+..+ ++++++||||||||.....+++. |+|.+|.|++.
T Consensus 101 ~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 180 (479)
T 3fmp_B 101 PQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK 180 (479)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHH
Confidence 33333334445556788899999999886 99999999999999665444332 99999999988
Q ss_pred HHHHHhCCccCcEEeEEEeecc---cCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFED---CTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~---~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
.+........+..+++.+.... ......+|+|+||++|++.+..... +.++++|||||+|...-...+.......
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i 260 (479)
T 3fmp_B 181 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (479)
T ss_dssp HHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHH
T ss_pred HHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHH
Confidence 8776654433444555444322 2233568999999999999876444 6899999999999332112222222222
Q ss_pred HHhhCCCceEEEecccCCh--HHHHhh-hCCCCEEeeCCcee---ceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 190 LINYRPDLKLLISSATLDA--EKFSDY-FGSAPIFKIPGRRY---PVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 190 ~~~~~~~~kii~~SAT~~~--~~~~~~-f~~~~v~~i~gr~~---~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
.....++.++|++|||+.. ..+... +.+...+.+..... .+...+...+.. ......+..++.....+++|
T Consensus 261 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~l 337 (479)
T 3fmp_B 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAM 337 (479)
T ss_dssp HTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------
T ss_pred HhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH---HHHHHHHHHHHhhccCCceE
Confidence 2224467899999999944 345544 43333333332211 111222211111 11222333344444568899
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||++++.++.+++.|.. .+..+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+.
T Consensus 338 vF~~s~~~~~~l~~~L~~---------~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 338 IFCHTRKTASWLAAELSK---------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCcHHHHHHHHHHHHh---------CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEe
Confidence 999999999999999876 35678899999999999999999999999999999999999999999999976
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNY 394 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~ 394 (582)
+++.... .+.|..+|.||+|||||.|. |.|+.+++....
T Consensus 409 d~p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 409 DLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp ----------------------------------------------------
T ss_pred cCCCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 6543221 13567789999999999986 999999987653
No 23
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-35 Score=330.08 Aligned_cols=318 Identities=16% Similarity=0.152 Sum_probs=221.0
Q ss_pred cccchHHHHHHHhcC-CCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhcc-------chHHHHHHHHHHHHH
Q 037717 49 VVKSTLEMLQEERKT-LPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLYE-------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 49 ~~~~~~~~~~~~r~~-lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll~-------P~r~~a~~~a~~va~ 118 (582)
.......+.++.... -...++|.++++++.+++++++++|||||||. ++|.+... |++.++.+....+..
T Consensus 27 ~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 27 PWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHh
Confidence 333444555554333 34678999999999999999999999999994 77776554 999999999888766
Q ss_pred HhCCccCcEEeEEEeecc--------cCCCCccEEEEChHHHH------HHHHcCCCCCCCCceEeecccCC---C--cc
Q 037717 119 EMGVKLGHEVGYSIRFED--------CTSDKTVLKYMTDCMLL------REIVIEPSLESYSVLIVDEAQER---T--LS 179 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~~--------~~~~~t~I~~~T~g~Ll------~~l~~~~~l~~~~~vViDE~HeR---~--~~ 179 (582)
. +...+...|.....+. ......+|+|+||++|. +.+.....+.++++|||||||.. + ..
T Consensus 107 ~-gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr 185 (591)
T 2v1x_A 107 L-GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFR 185 (591)
T ss_dssp H-TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCC
T ss_pred c-CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccH
Confidence 4 4332111111000000 02457899999999874 23322223778999999999942 2 22
Q ss_pred hhHHHHHHHHHHhhCCCceEEEecccCCh---HHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhc
Q 037717 180 TDNLFGLLKDLINYRPDLKLLISSATLDA---EKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVN 256 (582)
Q Consensus 180 ~d~ll~~lk~~~~~~~~~kii~~SAT~~~---~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (582)
.++ ..+..+....|+.++|+||||++. +.+.++++......+........++|...+........+..++.....
T Consensus 186 ~~~--~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~ 263 (591)
T 2v1x_A 186 PDY--KALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263 (591)
T ss_dssp GGG--GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHH--HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHH
Confidence 222 122233345678999999999965 445667764332222221111122222111111122233344444432
Q ss_pred -CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC
Q 037717 257 -EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID 335 (582)
Q Consensus 257 -~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp 335 (582)
.+++++||||+++++++.+++.|.. .++.+..+||+|++++|.++++.|.+|..+|||||+++++|||+|
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~---------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p 334 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQN---------LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKP 334 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCS
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHH---------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcc
Confidence 3568999999999999999999987 467899999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
+|++||+.++ |.|..+|.||+|||||.| +|.|+.+|+..+...
T Consensus 335 ~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 335 DVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp CEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred cccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 9999995443 457889999999999998 599999999887654
No 24
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=317.74 Aligned_cols=312 Identities=17% Similarity=0.141 Sum_probs=219.0
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhh----------------------------
Q 037717 51 KSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQY---------------------------- 100 (582)
Q Consensus 51 ~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~---------------------------- 100 (582)
.....+......-...+++|.+++..+.++++++++||||||||. ++|.+
T Consensus 23 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T 2i4i_A 23 GEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYP 102 (417)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCC
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCc
Confidence 344444444455556788999999999999999999999999995 34432
Q ss_pred ---hccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEe
Q 037717 101 ---LYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIV 170 (582)
Q Consensus 101 ---ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vVi 170 (582)
++-|+|.+|.+++.++..... ..+..++....... ....+++|+|+||++|++.+..+.. +.++++|||
T Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 103 ISLVLAPTRELAVQIYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred cEEEECCcHHHHHHHHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 112999999999988776542 22333332211111 1234679999999999999887664 899999999
Q ss_pred ecccCCCcchhHHHHHHHHHHhh-----CCCceEEEecccCC--hHHHHhhhCCCCEEeeCCce----eceeEEEecCCc
Q 037717 171 DEAQERTLSTDNLFGLLKDLINY-----RPDLKLLISSATLD--AEKFSDYFGSAPIFKIPGRR----YPVELFYTKAPE 239 (582)
Q Consensus 171 DE~HeR~~~~d~ll~~lk~~~~~-----~~~~kii~~SAT~~--~~~~~~~f~~~~v~~i~gr~----~~v~~~~~~~~~ 239 (582)
||||. .....+ ...++.+... ....++++||||+. ...+...+...++....++. ..+...+...+.
T Consensus 182 DEah~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (417)
T 2i4i_A 182 DEADR-MLDMGF-EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 259 (417)
T ss_dssp SSHHH-HHHTTC-HHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCG
T ss_pred EChhH-hhccCc-HHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEecc
Confidence 99993 111111 1223333321 22689999999993 34455444445544332221 123333333333
Q ss_pred hhHHHHHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC
Q 037717 240 VDYIEAAIVTALQIHVN-EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA 318 (582)
Q Consensus 240 ~~~~~~~~~~~~~i~~~-~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~ 318 (582)
.+... .+..+... ..++++||||+++++++.+++.|.+ .++.+..+||++++++|.++++.|++|.
T Consensus 260 ~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 260 SDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH---------EGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp GGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred HhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH---------CCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 22222 22233322 3467899999999999999999987 3677999999999999999999999999
Q ss_pred cEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhhhhh
Q 037717 319 RKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHNYHR 396 (582)
Q Consensus 319 ~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~~~~ 396 (582)
.+|||||+++++|+|+|++++||+.+. |.|..+|.||+||+||.|. |.|+.+|++.+...
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999999999999999999999995443 5678899999999999985 99999999877654
No 25
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.2e-36 Score=335.10 Aligned_cols=353 Identities=15% Similarity=0.137 Sum_probs=233.3
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhcc--------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEC
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYE--------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMT 148 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~--------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T 148 (582)
..++++++++||||||||+.+.+.+.. |+|++|.++++++.+ ++..++..+|.............+++++|
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~il~~T 230 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQASHVSCT 230 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCSEEEEE
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccceeEec
Confidence 347889999999999999977776654 999999999999865 45444433332222111122347888998
Q ss_pred hHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC-CCceEEEecccC-ChHHHHhhhCCCCEEeeCCc
Q 037717 149 DCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR-PDLKLLISSATL-DAEKFSDYFGSAPIFKIPGR 226 (582)
Q Consensus 149 ~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~-~~~kii~~SAT~-~~~~~~~~f~~~~v~~i~gr 226 (582)
++++ +....+++|||||+|++ .+.+....+.+.+.... ++++++++|||. ..+.+....+....+....+
T Consensus 231 ~e~~-------~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r 302 (677)
T 3rc3_A 231 VEMC-------SVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKR 302 (677)
T ss_dssp GGGC-------CSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCC
T ss_pred HhHh-------hhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEeee
Confidence 8653 24678899999999965 44444444444444444 678999999997 45555655543322211122
Q ss_pred eeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHH
Q 037717 227 RYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTEL 306 (582)
Q Consensus 227 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 306 (582)
..+.. +....- ........|+ +||++++++++.+++.|.+ .++.+.++||+|++++
T Consensus 303 ~~~l~--~~~~~l------------~~l~~~~~g~-iIf~~s~~~ie~la~~L~~---------~g~~v~~lHG~L~~~~ 358 (677)
T 3rc3_A 303 LTPIS--VLDHAL------------ESLDNLRPGD-CIVCFSKNDIYSVSRQIEI---------RGLESAVIYGSLPPGT 358 (677)
T ss_dssp SSCEE--ECSSCC------------CSGGGCCTTE-EEECSSHHHHHHHHHHHHH---------TTCCCEEECTTSCHHH
T ss_pred cchHH--HHHHHH------------HHHHhcCCCC-EEEEcCHHHHHHHHHHHHh---------cCCCeeeeeccCCHHH
Confidence 22221 111110 0011122344 6778889999999999987 3577999999999999
Q ss_pred HHHhcCCCCC--CCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC---
Q 037717 307 QAKIFEPTPE--RARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG--- 381 (582)
Q Consensus 307 r~~v~~~~~~--g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~--- 381 (582)
|+++++.|++ |.++|||||+++++|||+ ++++|||+|+.|. .||+..+. ...|+|.++|.||+|||||.|
T Consensus 359 R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g 433 (677)
T 3rc3_A 359 KLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRF 433 (677)
T ss_dssp HHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSC
T ss_pred HHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCC
Confidence 9999999988 999999999999999999 8999999999987 78877443 256999999999999999999
Q ss_pred -CCeEEEeeChh--hhhhhhh--hhhHhhhh--HHHHHHHHhcCCccccccCCCCchHHHHHHHHHHHHHcCCCcCCC--
Q 037717 382 -PGKCFRLYTLH--NYHRIWM--TILCQKYN--ELIWKMLSLFSNVLVNFDFIDPPLEEALLKAFELLYALGALNKAG-- 452 (582)
Q Consensus 382 -~G~~~~L~~~~--~~~~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f~~~~~p~~~~i~~al~~L~~lgal~~~~-- 452 (582)
+|.||++++++ .+..++. .|++.+.+ ...++++.++.. ++...+...++.+..++.++...
T Consensus 434 ~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~l~ell~~l~~~~~vd~~f~~ 503 (677)
T 3rc3_A 434 KEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDATLSNLIDIFVDFSQVDGQYFV 503 (677)
T ss_dssp SSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSCHHHHHHHHHHHCBCCTTEEE
T ss_pred CCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcchHHHHHHHHHHhhcccchhhc
Confidence 58999999887 4555555 47777755 455555555421 11123455666666666665432
Q ss_pred ----ccchhchhhhcCCCChHHHHHHHhc
Q 037717 453 ----QLTRVGRQMAEFPIDPKLSKTIVSL 477 (582)
Q Consensus 453 ----~lT~lG~~~a~lpl~p~~~k~l~~~ 477 (582)
+...++..+..+|++..---.++.+
T Consensus 504 ~~l~~~~~la~~l~~~~L~~~~~~~f~~a 532 (677)
T 3rc3_A 504 CNMDDFKFSAELIQHIPLSLRVRYVFCTA 532 (677)
T ss_dssp CCCHHHHHHHHHTTTSCCCHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhhCCCCHHHHhheEeC
Confidence 2334555666666666554444443
No 26
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.2e-34 Score=321.61 Aligned_cols=313 Identities=16% Similarity=0.175 Sum_probs=215.6
Q ss_pred HHhcCCCChHHHHHHHHHHh--CCCeEEEECCCCCchhch--Hhhh--h---------------ccchHHHHHHHHHHHH
Q 037717 59 EERKTLPIYPFWEELLQAVS--GYPVLAIVGETGSGKTTQ--IPQY--L---------------YEPRWVAAMSVAARVS 117 (582)
Q Consensus 59 ~~r~~lPi~~~~~~il~~i~--~~~~viv~a~TGSGKTt~--ip~~--l---------------l~P~r~~a~~~a~~va 117 (582)
....-...+++|.+++..+. .+++++++||||||||.. +|.+ + +-|+|.+|.|++..+.
T Consensus 88 ~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 88 TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 33344457899999999988 678999999999999953 3322 1 1199999999999887
Q ss_pred HHhCCccC---cEEeEEEeecc-------cCCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecccC-----CCcch
Q 037717 118 QEMGVKLG---HEVGYSIRFED-------CTSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQE-----RTLST 180 (582)
Q Consensus 118 ~~~~~~~g---~~vgy~v~~~~-------~~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~He-----R~~~~ 180 (582)
.......+ ..+........ ....+.+|+|+||++|++.+.... .+.++++|||||||. +....
T Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~ 247 (563)
T 3i5x_A 168 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 247 (563)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHH
Confidence 75332111 11111111111 012357899999999998886542 388999999999993 12223
Q ss_pred hHHHHHHHHHHh-hCCCceEEEecccCC--hHHHHhhhCCCCE-EeeCC-------ceeceeEEEec-CCchhHHHHHHH
Q 037717 181 DNLFGLLKDLIN-YRPDLKLLISSATLD--AEKFSDYFGSAPI-FKIPG-------RRYPVELFYTK-APEVDYIEAAIV 248 (582)
Q Consensus 181 d~ll~~lk~~~~-~~~~~kii~~SAT~~--~~~~~~~f~~~~v-~~i~g-------r~~~v~~~~~~-~~~~~~~~~~~~ 248 (582)
+.++..++.... ..++.++++||||++ ...+..++...+. +.+.. ....+...+.. ..........+.
T Consensus 248 ~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (563)
T 3i5x_A 248 ETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVE 327 (563)
T ss_dssp HHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHH
T ss_pred HHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHH
Confidence 333444433221 234789999999994 4666666554432 22111 01112222221 122222233333
Q ss_pred HHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCC
Q 037717 249 TALQIHV-NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNI 327 (582)
Q Consensus 249 ~~~~i~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~i 327 (582)
.+..... ..+++++||||++++.++.+++.|.+... .++.+..+||+|++++|.++++.|++|..+|||||++
T Consensus 328 ~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~ 401 (563)
T 3i5x_A 328 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 401 (563)
T ss_dssp HHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG
T ss_pred HHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch
Confidence 3333332 35568999999999999999999987542 2677999999999999999999999999999999999
Q ss_pred CccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 328 AETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 328 ae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
+++|||+|++++||+.+. |.|..+|.||+|||||.| +|.|+.++++.+..
T Consensus 402 ~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 402 GARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp GTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred hhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 999999999999994432 456778999999999998 59999999987643
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.4e-35 Score=320.28 Aligned_cols=295 Identities=20% Similarity=0.271 Sum_probs=217.0
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhcc-------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLYE-------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE 135 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll~-------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~ 135 (582)
...++|.++++++.+++++++++|||||||. ++|.++.. |++.++.+...++.. ++. .+++-....
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~-~gi----~~~~l~~~~ 99 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQA-NGV----AAACLNSTQ 99 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHH-TTC----CEEEECTTS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHH-cCC----cEEEEeCCC
Confidence 4588999999999999999999999999995 78877555 999999998887764 332 232211110
Q ss_pred ----------ccCCCCccEEEEChHHHHHHHHcC-CCCCCCCceEeecccC---CCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 136 ----------DCTSDKTVLKYMTDCMLLREIVIE-PSLESYSVLIVDEAQE---RTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 136 ----------~~~~~~t~I~~~T~g~Ll~~l~~~-~~l~~~~~vViDE~He---R~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
.......+|+|+||++|......+ ....++++|||||||. ++.+....+..+..+....|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~ 179 (523)
T 1oyw_A 100 TREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMA 179 (523)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEE
Confidence 011245799999999985321111 1247889999999994 34333334445555666778999999
Q ss_pred ecccCChH---HHHhhhC-CCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHH
Q 037717 202 SSATLDAE---KFSDYFG-SAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEE 277 (582)
Q Consensus 202 ~SAT~~~~---~~~~~f~-~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 277 (582)
+|||++.. .+.++++ ..+.+.+.+...| .+.|...+..+... .++......+++++||||+++++++.+++
T Consensus 180 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~----~l~~~l~~~~~~~~IVf~~sr~~~e~l~~ 254 (523)
T 1oyw_A 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLD----QLMRYVQEQRGKSGIIYCNSRAKVEDTAA 254 (523)
T ss_dssp EESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHH----HHHHHHHHTTTCCEEEECSSHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHH----HHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Confidence 99999553 4566665 3455544443332 12222212222222 23333334466799999999999999999
Q ss_pred HHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCc
Q 037717 278 ILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGM 357 (582)
Q Consensus 278 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~ 357 (582)
.|.+ .++.+..+||+|++++|+++++.|.+|..+|||||+++++|||+|+|++||+.+.
T Consensus 255 ~L~~---------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------ 313 (523)
T 1oyw_A 255 RLQS---------KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI------------ 313 (523)
T ss_dssp HHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC------------
T ss_pred HHHH---------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC------------
Confidence 9987 3677999999999999999999999999999999999999999999999995443
Q ss_pred ccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 358 ESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 358 ~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
|.|.++|.||+|||||.| +|.|+.+|+..+...
T Consensus 314 ------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~ 347 (523)
T 1oyw_A 314 ------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (523)
T ss_dssp ------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHHH
Confidence 568889999999999998 599999999887643
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.5e-35 Score=300.11 Aligned_cols=294 Identities=16% Similarity=0.140 Sum_probs=211.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcE
Q 037717 57 LQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHE 127 (582)
Q Consensus 57 ~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~ 127 (582)
..+...--..+++|.+++..+.+++++++++|||||||.....++++ |++.++.+++.++.+.. ...+..
T Consensus 8 ~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~-~~~~~~ 86 (337)
T 2z0m_A 8 AIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG-RYMDTK 86 (337)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT-TTSCCC
T ss_pred HHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh-hhcCCc
Confidence 33444555689999999999999999999999999999766655544 99999999998887543 223333
Q ss_pred EeEEEeecc-----cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEE
Q 037717 128 VGYSIRFED-----CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLL 200 (582)
Q Consensus 128 vgy~v~~~~-----~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii 200 (582)
++....... ....+.+|+|+||+.|.+.+..... +.++++||+||||.. ....+ ...++.++. ..+..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~-~~~~~~~~~~~~~~~~~~ 164 (337)
T 2z0m_A 87 VAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM-FEMGF-IDDIKIILAQTSNRKITG 164 (337)
T ss_dssp EEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH-HHTTC-HHHHHHHHHHCTTCSEEE
T ss_pred EEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh-hcccc-HHHHHHHHhhCCcccEEE
Confidence 333221111 0113478999999999998876554 789999999999921 11111 112222222 33567888
Q ss_pred EecccCCh---HHHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHH
Q 037717 201 ISSATLDA---EKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEE 277 (582)
Q Consensus 201 ~~SAT~~~---~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 277 (582)
+||||+.. +.+.+|+.+...+.......++...+........ . .+.......++++|||++++++++.+++
T Consensus 165 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~lvf~~~~~~~~~l~~ 238 (337)
T 2z0m_A 165 LFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR--S----KVQALRENKDKGVIVFVRTRNRVAKLVR 238 (337)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH--H----HHHHHHTCCCSSEEEECSCHHHHHHHHT
T ss_pred EEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH--H----HHHHHHhCCCCcEEEEEcCHHHHHHHHH
Confidence 99999944 3456677655444433333344444443322211 1 1233344567899999999999998887
Q ss_pred HHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCc
Q 037717 278 ILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGM 357 (582)
Q Consensus 278 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~ 357 (582)
.|. .+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+.+
T Consensus 239 ~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~------------- 292 (337)
T 2z0m_A 239 LFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD------------- 292 (337)
T ss_dssp TCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS-------------
T ss_pred Hhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec-------------
Confidence 664 267899999999999999999999999999999999999999999999543
Q ss_pred ccccccccCHHhHHHHhcCCCCCC-CCeEEEeeC
Q 037717 358 ESLLVNPISKASANQRTGLSERTG-PGKCFRLYT 390 (582)
Q Consensus 358 ~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~ 390 (582)
.|.|..+|.||+|||||.| +|.|+.++.
T Consensus 293 -----~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 293 -----APQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp -----CCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred -----CCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 2567889999999999997 599999998
No 29
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.7e-35 Score=314.13 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=196.2
Q ss_pred HHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec-ccCCCC
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE-DCTSDK 141 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~-~~~~~~ 141 (582)
++.++++++++||||||||+.+...++. |+|++|.|++..+. +..+++....- ...+++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh-------cCCeEEecccceeccCCc
Confidence 4578899999999999999764333221 99999999987664 22345544321 234455
Q ss_pred ccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhC-CCCE
Q 037717 142 TVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFG-SAPI 220 (582)
Q Consensus 142 t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~-~~~v 220 (582)
.-+.+++.+.+.+.+.....+.++++|||||+|..+...+..++.+..... +++.++++||||+... ..++.. ..++
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~-~~~~~~~~~~~ 154 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT-SDEFPHSNGEI 154 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch-hhhhhhcCCCe
Confidence 667788888888888877779999999999999876666666777766553 4679999999999433 112221 1122
Q ss_pred EeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecC
Q 037717 221 FKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYA 300 (582)
Q Consensus 221 ~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 300 (582)
.. +...+........+. .+ . ..++++||||+++++++.+++.|.+ .++.+..+||
T Consensus 155 ~~-------~~~~~~~~~~~~~~~----~l----~-~~~~~~lVF~~s~~~a~~l~~~L~~---------~~~~v~~lhg 209 (440)
T 1yks_A 155 ED-------VQTDIPSEPWNTGHD----WI----L-ADKRPTAWFLPSIRAANVMAASLRK---------AGKSVVVLNR 209 (440)
T ss_dssp EE-------EECCCCSSCCSSSCH----HH----H-HCCSCEEEECSCHHHHHHHHHHHHH---------TTCCEEECCS
T ss_pred eE-------eeeccChHHHHHHHH----HH----H-hcCCCEEEEeCCHHHHHHHHHHHHH---------cCCCEEEecc
Confidence 11 111111111111111 11 1 1268999999999999999999987 3567999999
Q ss_pred CCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceee-cCCCCcccccccccCHHhHHHHhcCCCC
Q 037717 301 NLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSY-NPKTGMESLLVNPISKASANQRTGLSER 379 (582)
Q Consensus 301 ~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~y-d~~~~~~~l~~~~~S~~~~~QR~GRaGR 379 (582)
++|+++++.|++|+.+|||||+++|+|||+| +++|||+|+.+...| +...++......|.|.++|.||+||+||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 5788999999999999999999999999999 999999999988776 4444566677789999999999999999
Q ss_pred CC--CCeEEEeeC
Q 037717 380 TG--PGKCFRLYT 390 (582)
Q Consensus 380 ~~--~G~~~~L~~ 390 (582)
.| +|.||.+|+
T Consensus 285 ~g~~~g~~~~l~~ 297 (440)
T 1yks_A 285 NPNRDGDSYYYSE 297 (440)
T ss_dssp CTTCCCEEEEECS
T ss_pred CCCCCceEEEEec
Confidence 74 699999984
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-35 Score=313.94 Aligned_cols=314 Identities=15% Similarity=0.176 Sum_probs=109.9
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHH
Q 037717 51 KSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAAR 115 (582)
Q Consensus 51 ~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~ 115 (582)
.....+......--..+++|.+++..+.+++++++++|||||||.+...+++. |++.++.++++.
T Consensus 29 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 29 DENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHH
Confidence 33344444444445688999999999999999999999999999654332221 999999999888
Q ss_pred HHHHhCCccCcEEeEEEeeccc-----CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 116 VSQEMGVKLGHEVGYSIRFEDC-----TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 116 va~~~~~~~g~~vgy~v~~~~~-----~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
+..... ..+..++........ ...+.+|+|+||+.|++.+..... +.++++||+||||.- ....+...+.+.
T Consensus 109 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~-~~~~~~~~~~~~ 186 (394)
T 1fuu_A 109 VMALAF-HMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-LSSGFKEQIYQI 186 (394)
T ss_dssp HHHHTT-TSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-HHTTCHHHHHHH
T ss_pred HHHHhc-cCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh-hCCCcHHHHHHH
Confidence 766432 223333322211110 012578999999999998876655 789999999999931 111111112222
Q ss_pred HHhhCCCceEEEecccCCh---HHHHhhhCCCCEEeeCCcee---ceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 037717 190 LINYRPDLKLLISSATLDA---EKFSDYFGSAPIFKIPGRRY---PVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDIL 263 (582)
Q Consensus 190 ~~~~~~~~kii~~SAT~~~---~~~~~~f~~~~v~~i~gr~~---~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iL 263 (582)
.....++.++++||||+.. +.+..++.....+.+..... .+..++......++.. ..+..+....+.+++|
T Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~l 263 (394)
T 1fuu_A 187 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY---ECLTDLYDSISVTQAV 263 (394)
T ss_dssp HHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------------------
T ss_pred HHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH---HHHHHHHhcCCCCcEE
Confidence 2234568899999999943 33444554332333322211 1122222222222111 1222233333467899
Q ss_pred EEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeC
Q 037717 264 VFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHP 343 (582)
Q Consensus 264 VFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~ 343 (582)
|||+++++++.+++.|.+ .++.+..+||++++++|+++++.|++|..+|||||+++++|+|+|++++||+.
T Consensus 264 Vf~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 264 IFCNTRRKVEELTTKLRN---------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCHHHHHHHHHHHHH---------cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 999999999999999876 36778899999999999999999999999999999999999999999999944
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh
Q 037717 344 GFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR 396 (582)
Q Consensus 344 g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~ 396 (582)
+ .|.|..+|.||+||+||.| +|.|+.++++.+...
T Consensus 335 ~------------------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 335 D------------------LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ------------------------------------------------------
T ss_pred C------------------CCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 3 3567788999999999997 599999999886543
No 31
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.3e-34 Score=310.52 Aligned_cols=272 Identities=16% Similarity=0.157 Sum_probs=201.2
Q ss_pred CCCeEEEECCCCCchhchHhhhhc----c---------chHHHHHHHHHHHHHHhCCccCcEEeEEEee-cccCCCCccE
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLY----E---------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRF-EDCTSDKTVL 144 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll----~---------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~-~~~~~~~t~I 144 (582)
.+++++++||||||||+.+...++ . |++++|.|++..+. |..+++..+. +....++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCCCceE
Confidence 368999999999999976533222 1 99999999876653 3345554432 3344557789
Q ss_pred EEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhC-CCCEEee
Q 037717 145 KYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFG-SAPIFKI 223 (582)
Q Consensus 145 ~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~-~~~v~~i 223 (582)
.++|.+.+.+.+..+..+.++++|||||+|.++...+.....++... .+++.++|+||||+... +.++.. ..|+..+
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~ 151 (431)
T 2v6i_A 74 DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSNSPIIDE 151 (431)
T ss_dssp EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCSSCCEEE
T ss_pred EEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCCCceeec
Confidence 99999999998888777999999999999988777777777777764 34689999999999432 122221 2233322
Q ss_pred CCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCC
Q 037717 224 PGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLP 303 (582)
Q Consensus 224 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 303 (582)
.+. +....... ++.... ..++++||||+++++++.+++.|.+. ++.+..+||+
T Consensus 152 ~~~-------~~~~~~~~--------~~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~-- 204 (431)
T 2v6i_A 152 ETR-------IPDKAWNS--------GYEWIT-EFDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK-- 204 (431)
T ss_dssp ECC-------CCSSCCSS--------CCHHHH-SCSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT--
T ss_pred ccc-------CCHHHHHH--------HHHHHH-cCCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc--
Confidence 211 11100011 111111 23679999999999999999999873 5679999997
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-
Q 037717 304 TELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP- 382 (582)
Q Consensus 304 ~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~- 382 (582)
+|+++++.|++|+.+|||||+++|+|||+| +.+|||+|..+...|| ..++......|.|.++|.||+||+||.|+
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 688899999999999999999999999999 9999999999999998 66777778899999999999999999984
Q ss_pred CeEEEeeC
Q 037717 383 GKCFRLYT 390 (582)
Q Consensus 383 G~~~~L~~ 390 (582)
+.|+.+|.
T Consensus 281 ~~~~~~~~ 288 (431)
T 2v6i_A 281 LGDIYAYS 288 (431)
T ss_dssp CCCEEEEC
T ss_pred CCeEEEEc
Confidence 44555554
No 32
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.4e-34 Score=315.89 Aligned_cols=307 Identities=16% Similarity=0.178 Sum_probs=210.8
Q ss_pred CCChHHHHHHHHHHh--CCCeEEEECCCCCchhc--hHhhh--h---------------ccchHHHHHHHHHHHHHHhCC
Q 037717 64 LPIYPFWEELLQAVS--GYPVLAIVGETGSGKTT--QIPQY--L---------------YEPRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 64 lPi~~~~~~il~~i~--~~~~viv~a~TGSGKTt--~ip~~--l---------------l~P~r~~a~~~a~~va~~~~~ 122 (582)
-...++|.+++..+. .+++++++||||||||. ++|.+ + +-|+|.+|.|++..+......
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhh
Confidence 347899999999988 78899999999999995 44432 1 119999999999888775421
Q ss_pred ccC---cEEeEEEeeccc-------CCCCccEEEEChHHHHHHHHcC--CCCCCCCceEeecccC---CC--cchhHHHH
Q 037717 123 KLG---HEVGYSIRFEDC-------TSDKTVLKYMTDCMLLREIVIE--PSLESYSVLIVDEAQE---RT--LSTDNLFG 185 (582)
Q Consensus 123 ~~g---~~vgy~v~~~~~-------~~~~t~I~~~T~g~Ll~~l~~~--~~l~~~~~vViDE~He---R~--~~~d~ll~ 185 (582)
..+ ..+......... ...+.+|+|+||++|++.+... ..+.++++|||||||. .+ .+...++.
T Consensus 122 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201 (579)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred cccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHH
Confidence 111 111111111110 0235789999999999888654 2388999999999993 22 11222333
Q ss_pred HHHHHHh-hCCCceEEEecccCC--hHHHHhhhCCCCE-EeeCC-------ceeceeEEEecCC-chhHHHHHHHHHHHH
Q 037717 186 LLKDLIN-YRPDLKLLISSATLD--AEKFSDYFGSAPI-FKIPG-------RRYPVELFYTKAP-EVDYIEAAIVTALQI 253 (582)
Q Consensus 186 ~lk~~~~-~~~~~kii~~SAT~~--~~~~~~~f~~~~v-~~i~g-------r~~~v~~~~~~~~-~~~~~~~~~~~~~~i 253 (582)
.+..... ..++.++++||||+. ...+..++...+. +.+.. ....+...+...+ ........+..+...
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 281 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHH
Confidence 3332211 123789999999994 3555555544432 22211 0111222222211 122222333333333
Q ss_pred Hh-cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCcccc
Q 037717 254 HV-NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSL 332 (582)
Q Consensus 254 ~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gi 332 (582)
.. ..+++++||||++++.++.+++.|.+... .++.+..+||+|++++|.++++.|++|..+|||||+++++||
T Consensus 282 ~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 355 (579)
T 3sqw_A 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355 (579)
T ss_dssp HHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred HhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCC
Confidence 32 25568999999999999999999987542 267799999999999999999999999999999999999999
Q ss_pred ccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhh
Q 037717 333 TIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNY 394 (582)
Q Consensus 333 dIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~ 394 (582)
|+|++++||+.+ .|.|..+|.||+|||||.| +|.|+.++++.+.
T Consensus 356 Dip~v~~VI~~~------------------~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 356 DFPNVHEVLQIG------------------VPSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp CCTTCCEEEEES------------------CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CcccCCEEEEcC------------------CCCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 999999999443 2456778999999999998 4999999998754
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-35 Score=323.91 Aligned_cols=305 Identities=13% Similarity=0.145 Sum_probs=194.2
Q ss_pred CChHHHHHHHHHHhCC--CeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHHHhCCc-cCc
Q 037717 65 PIYPFWEELLQAVSGY--PVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQEMGVK-LGH 126 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~--~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~~~~~~-~g~ 126 (582)
..+++|.+++.++.++ ++++++||||||||.+...+++. |++.++.|++.++....... +..
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT 220 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCE
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeE
Confidence 3567888899999887 99999999999999765443331 99999999999887764322 222
Q ss_pred EEeEEEeecccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 127 EVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 127 ~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
..++..........+.+|+|+|+++|.+.+..... +.++++|||||+|.......+.....+......++.++|+||||
T Consensus 221 ~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 221 AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp EC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred EEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 22333222233344789999999999998877664 89999999999995433222222222222224468999999999
Q ss_pred CC--hHHHHhhhCCCC-EEeeCCceec---eeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHH
Q 037717 206 LD--AEKFSDYFGSAP-IFKIPGRRYP---VELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEIL 279 (582)
Q Consensus 206 ~~--~~~~~~~f~~~~-v~~i~gr~~~---v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L 279 (582)
+. .+.+...+...+ .+.+.....+ +...+....... .....+..+......+++||||+++++++.+++.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 301 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE---HKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp CSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH---HHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH---HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 94 566666655443 3333333221 222222222211 12223344444445689999999999999999988
Q ss_pred HHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCccc
Q 037717 280 KQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMES 359 (582)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~ 359 (582)
.+ .+..+..+||++++++|+.+++.|++|..+|||||+++++|+|+|++++||+.+.+...
T Consensus 378 ~~---------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~---------- 438 (508)
T 3fho_A 378 TA---------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ---------- 438 (508)
T ss_dssp TT---------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----------
T ss_pred Hh---------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc----------
Confidence 76 35678899999999999999999999999999999999999999999999965543211
Q ss_pred ccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhh
Q 037717 360 LLVNPISKASANQRTGLSERTG-PGKCFRLYTLHN 393 (582)
Q Consensus 360 l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~ 393 (582)
..+.|..+|.||+|||||.| +|.|+.+++...
T Consensus 439 --~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 439 --AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp ------CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred --cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 11256788999999999998 499999998543
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-33 Score=321.60 Aligned_cols=307 Identities=15% Similarity=0.146 Sum_probs=171.9
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-----------------chHHHHHHHHHHHHHHhCCccC
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-----------------PRWVAAMSVAARVSQEMGVKLG 125 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-----------------P~r~~a~~~a~~va~~~~~~~g 125 (582)
-...+++|.+++..+..++++++++|||||||++...++++ |++.++.+....+.+... ..|
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~-~~~ 89 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE-RHG 89 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT-TTT
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc-cCC
Confidence 34578999999999999999999999999999765554431 999999999877766542 223
Q ss_pred cEEeEEEeecccC------CCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhH---HHHHHHHHHh--
Q 037717 126 HEVGYSIRFEDCT------SDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDN---LFGLLKDLIN-- 192 (582)
Q Consensus 126 ~~vgy~v~~~~~~------~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~---ll~~lk~~~~-- 192 (582)
..++.-....... ..+++|+|+|||+|++.+..+.. +.++++|||||||...-.... +..++.....
T Consensus 90 ~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~ 169 (696)
T 2ykg_A 90 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS 169 (696)
T ss_dssp CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhccc
Confidence 3343322211111 13579999999999999987644 788999999999964433222 2222222211
Q ss_pred hCCCceEEEecccCC-------h---HHHHhhhC--CCCEEeeCCce---------eceeEEEec-CCc-----------
Q 037717 193 YRPDLKLLISSATLD-------A---EKFSDYFG--SAPIFKIPGRR---------YPVELFYTK-APE----------- 239 (582)
Q Consensus 193 ~~~~~kii~~SAT~~-------~---~~~~~~f~--~~~v~~i~gr~---------~~v~~~~~~-~~~----------- 239 (582)
..+..++|+||||+. . +.+.+.+. +.+++...... .|...+... ...
T Consensus 170 ~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l 249 (696)
T 2ykg_A 170 SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 249 (696)
T ss_dssp CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHH
Confidence 246789999999995 2 22222221 11111110000 000000000 000
Q ss_pred ----------------------------h---------------------------------------------------
Q 037717 240 ----------------------------V--------------------------------------------------- 240 (582)
Q Consensus 240 ----------------------------~--------------------------------------------------- 240 (582)
.
T Consensus 250 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~ 329 (696)
T 2ykg_A 250 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 329 (696)
T ss_dssp HHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchh
Confidence 0
Q ss_pred ---------------------h-----H--------------------HHHHHHHHHHHHh----cCCCCCEEEEcCCHH
Q 037717 241 ---------------------D-----Y--------------------IEAAIVTALQIHV----NEPTGDILVFLTGQD 270 (582)
Q Consensus 241 ---------------------~-----~--------------------~~~~~~~~~~i~~----~~~~g~iLVFl~~~~ 270 (582)
+ + ....+..+..+.. ..+++++|||+++++
T Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~ 409 (696)
T 2ykg_A 330 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 409 (696)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHH
Confidence 0 0 0001111222221 235689999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCeEEEEe--------cCCCCHHHHHHhcCCCCC-CCcEEEEeCCCCccccccCCeeEEE
Q 037717 271 EIERAEEILKQRTRGLGTKIAELIICPI--------YANLPTELQAKIFEPTPE-RARKVVLATNIAETSLTIDGIKYVI 341 (582)
Q Consensus 271 ~i~~~~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~v~~~~~~-g~~kVivaT~iae~gidIp~v~~VI 341 (582)
+++.+++.|.+... ...+.+..+ ||+|++++|+++++.|++ |.++|||||+++++|||+|++++||
T Consensus 410 ~~~~l~~~L~~~~~-----~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI 484 (696)
T 2ykg_A 410 LVDALKNWIEGNPK-----LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484 (696)
T ss_dssp HHHHHHHHHHHCTT-----CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEE
T ss_pred HHHHHHHHHHhCCC-----ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEE
Confidence 99999999987311 122556666 669999999999999998 9999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhh
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNY 394 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~ 394 (582)
+ ||+. .|..+|.||+|| ||.++|.|+.|+++.+.
T Consensus 485 ~--------~d~p----------~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 485 L--------YEYV----------GNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp E--------ESCC------------CCCC----------CCCEEEEEESCHHH
T ss_pred E--------eCCC----------CCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 4 5443 344578999999 99999999999998776
No 35
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.2e-33 Score=314.59 Aligned_cols=277 Identities=15% Similarity=0.170 Sum_probs=206.3
Q ss_pred HHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeEEEee-cccCCC
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRF-EDCTSD 140 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~-~~~~~~ 140 (582)
+.+.++++++++||||||||+.+...++. |+|++|.|+++.+.. ..+++.... .....+
T Consensus 236 ~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~-------~~i~~~~~~l~~v~tp 308 (673)
T 2wv9_A 236 EMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG-------LPVRYLTPAVQREHSG 308 (673)
T ss_dssp GGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCCEECCC---CCCCS
T ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc-------CCeeeecccccccCCH
Confidence 34448999999999999999764333221 999999998876642 123443321 124455
Q ss_pred CccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhhhC-CCC
Q 037717 141 KTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDYFG-SAP 219 (582)
Q Consensus 141 ~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~f~-~~~ 219 (582)
+..+.+++.+.+.+.+..+..+.++++|||||+|+.+...+..+..++.... +++.++++||||+... +.++.. ..|
T Consensus 309 ~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~~~~~ 386 (673)
T 2wv9_A 309 NEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPDTNSP 386 (673)
T ss_dssp CCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSC
T ss_pred HHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcccCCc
Confidence 6778899999999999888779999999999999887777777777777653 3678999999999432 112221 223
Q ss_pred EEeeCCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEec
Q 037717 220 IFKIPGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIY 299 (582)
Q Consensus 220 v~~i~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh 299 (582)
+..+... +........ +.... ..++++||||+++++++.+++.|.+ .++.+..+|
T Consensus 387 i~~v~~~-------~~~~~~~~~--------l~~l~-~~~~~~lVF~~s~~~~e~la~~L~~---------~g~~v~~lH 441 (673)
T 2wv9_A 387 VHDVSSE-------IPDRAWSSG--------FEWIT-DYAGKTVWFVASVKMSNEIAQCLQR---------AGKRVIQLN 441 (673)
T ss_dssp EEEEECC-------CCSSCCSSC--------CHHHH-SCCSCEEEECSSHHHHHHHHHHHHT---------TTCCEEEEC
T ss_pred eEEEeee-------cCHHHHHHH--------HHHHH-hCCCCEEEEECCHHHHHHHHHHHHh---------CCCeEEEeC
Confidence 3322211 110111111 11111 2478999999999999999999987 357799999
Q ss_pred CCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccce--eecCCCCcccccccccCHHhHHHHhcCC
Q 037717 300 ANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVK--SYNPKTGMESLLVNPISKASANQRTGLS 377 (582)
Q Consensus 300 ~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~--~yd~~~~~~~l~~~~~S~~~~~QR~GRa 377 (582)
| ++|+++++.|++|+.+|||||+++|+|||+| +++|||+|+.... .||...++..+...|.|.++|.||+||+
T Consensus 442 g----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRa 516 (673)
T 2wv9_A 442 R----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRV 516 (673)
T ss_dssp S----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTS
T ss_pred h----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhcc
Confidence 9 3799999999999999999999999999999 9999999976653 4677666666778899999999999999
Q ss_pred CCC-C-CCeEEEeeC
Q 037717 378 ERT-G-PGKCFRLYT 390 (582)
Q Consensus 378 GR~-~-~G~~~~L~~ 390 (582)
||. + +|.||.++.
T Consensus 517 GR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 517 GRNPSQIGDEYHYGG 531 (673)
T ss_dssp SCCSSCCCEEEEECS
T ss_pred CCCCCCCCEEEEEEe
Confidence 998 3 699999974
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.7e-33 Score=300.48 Aligned_cols=297 Identities=14% Similarity=0.102 Sum_probs=200.9
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhhh-c-c--------chHHHHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQYL-Y-E--------PRWVAAMSVAARVSQE 119 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~l-l-~--------P~r~~a~~~a~~va~~ 119 (582)
..+.+..+.......+++|.+++..+.++++++++||||||||.. +|... . . |+|.+|.|++.++...
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 344555566667778899999999999999999999999999952 22111 1 1 9999999999998774
Q ss_pred hCCccCcEEeEEEeeccc----------CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccC--------------
Q 037717 120 MGVKLGHEVGYSIRFEDC----------TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQE-------------- 175 (582)
Q Consensus 120 ~~~~~g~~vgy~v~~~~~----------~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~He-------------- 175 (582)
.. .|..++.-...... .....+|+|+||++|++.+.. ..+.++++|||||||.
T Consensus 88 ~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 88 AD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp CC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred cc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhh
Confidence 32 44444432221111 112489999999999877653 3477999999999992
Q ss_pred CCcchhHHHHHHHHHH--------hhCCCceEEEecccCCh-----HHHHhhhCCCCEEeeCCceeceeEEEecCCchhH
Q 037717 176 RTLSTDNLFGLLKDLI--------NYRPDLKLLISSATLDA-----EKFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDY 242 (582)
Q Consensus 176 R~~~~d~ll~~lk~~~--------~~~~~~kii~~SAT~~~-----~~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~ 242 (582)
.+...+.+-.+++.+- ...++.+++++|||+.+ ..+..+++ ..+.........+...|......+.
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 243 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEK 243 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHH
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHH
Confidence 2222221112222110 11267899999999522 22333333 1111111112234444444433222
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEE-EecCCCCHHHHHHhcCCCCCCCcEE
Q 037717 243 IEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIIC-PIYANLPTELQAKIFEPTPERARKV 321 (582)
Q Consensus 243 ~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~~~~g~~kV 321 (582)
+. .++. . .++++||||+++++++.+++.|.. .++.+. .+||. +|+ ++.|++|..+|
T Consensus 244 l~----~~l~---~-~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 244 LV----ELLE---I-FRDGILIFAQTEEEGKELYEYLKR---------FKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp HH----HHHH---H-HCSSEEEEESSHHHHHHHHHHHHH---------TTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred HH----HHHH---H-cCCCEEEEECCHHHHHHHHHHHHH---------cCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 21 1222 1 247899999999999999999987 356777 88885 344 88999999999
Q ss_pred EEe----CCCCccccccCC-eeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-----CCeEEEeeCh
Q 037717 322 VLA----TNIAETSLTIDG-IKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-----PGKCFRLYTL 391 (582)
Q Consensus 322 iva----T~iae~gidIp~-v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-----~G~~~~L~~~ 391 (582)
||| |+++++|+|+|+ |++||++|.++ + .|..+|.||+|||||.| .|.|+.++.+
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~--------~--------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPS--------G--------PDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCT--------T--------TCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCC--------C--------CCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 999 999999999999 99999544421 0 67889999999999986 6999999944
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.1e-33 Score=299.17 Aligned_cols=303 Identities=17% Similarity=0.161 Sum_probs=209.3
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
.++++++|.+++..+..+ .+++.+|||+|||.++..++.. |++.++.+++..+.+..+... ..++
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~-~~v~ 84 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPP-EKIV 84 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCG-GGEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcch-hheE
Confidence 467899999999999988 8999999999999776655432 999999999999988765421 1222
Q ss_pred EEEeeccc------CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 130 YSIRFEDC------TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 130 y~v~~~~~------~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
.-. +... ...+.+|+|+|++.|.+.+..... +.++++||+||||... .......+.+.+....+..++++|
T Consensus 85 ~~~-g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~-~~~~~~~~~~~~~~~~~~~~~l~l 162 (494)
T 1wp9_A 85 ALT-GEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV-GNYAYVFIAREYKRQAKNPLVIGL 162 (494)
T ss_dssp EEC-SCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS-TTCHHHHHHHHHHHHCSSCCEEEE
T ss_pred Eee-CCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccC-CCCcHHHHHHHHHhcCCCCeEEEE
Confidence 111 1110 012568999999999998876654 8899999999999432 222222333444445678899999
Q ss_pred cccC--ChHHHHhhh---CCCCEEeeCCc-------eeceeEEE--ecCCch----------------------------
Q 037717 203 SATL--DAEKFSDYF---GSAPIFKIPGR-------RYPVELFY--TKAPEV---------------------------- 240 (582)
Q Consensus 203 SAT~--~~~~~~~~f---~~~~v~~i~gr-------~~~v~~~~--~~~~~~---------------------------- 240 (582)
|||+ +.+.+.+++ +..+....... ..+....+ ...+..
T Consensus 163 TaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
T 1wp9_A 163 TASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESS 242 (494)
T ss_dssp ESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred ecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999 345554433 32211110000 00111110 000000
Q ss_pred --------------------------------------------------------hHHH--------------------
Q 037717 241 --------------------------------------------------------DYIE-------------------- 244 (582)
Q Consensus 241 --------------------------------------------------------~~~~-------------------- 244 (582)
.++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (494)
T 1wp9_A 243 SPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSD 322 (494)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTS
T ss_pred CCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 0000
Q ss_pred --------------------HHHHHHHHHHhc----CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecC
Q 037717 245 --------------------AAIVTALQIHVN----EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYA 300 (582)
Q Consensus 245 --------------------~~~~~~~~i~~~----~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 300 (582)
..+..+..+... .+++++|||+++++.++.+++.|.+ .++.+..+||
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g 393 (494)
T 1wp9_A 323 KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK---------DGIKAKRFVG 393 (494)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH---------TTCCEEEECC
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH---------cCCCcEEEec
Confidence 001111222211 4678999999999999999999987 3577889999
Q ss_pred --------CCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHH
Q 037717 301 --------NLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQ 372 (582)
Q Consensus 301 --------~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Q 372 (582)
+++.++|+++++.|++|..+|||||+++++|+|+|++++||. || .|.+.+.+.|
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~--------~d----------~~~~~~~~~Q 455 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YE----------PVPSAIRSIQ 455 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SS----------CCHHHHHHHH
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--------eC----------CCCCHHHHHH
Confidence 999999999999999999999999999999999999999993 33 3457788999
Q ss_pred HhcCCCCCCCCeEEEeeChhhhhh
Q 037717 373 RTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 373 R~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
|+|||||.|+|.+|+|+++...+.
T Consensus 456 r~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 456 RRGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HHTTSCSCCCSEEEEEEETTSHHH
T ss_pred HHhhccCCCCceEEEEEecCCHHH
Confidence 999999999999999999887654
No 38
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.6e-32 Score=303.21 Aligned_cols=314 Identities=14% Similarity=0.115 Sum_probs=159.7
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc----------c-------chHHHHHHHHHHHHHHh---C
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----------E-------PRWVAAMSVAARVSQEM---G 121 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll----------~-------P~r~~a~~~a~~va~~~---~ 121 (582)
..+..+++|.+++..+..++++++++|||||||.+...+++ . |++.++.++...+.... +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 35668899999999999999999999999999955433321 1 99999999988877654 3
Q ss_pred CccCcEEeEEEeecc--cCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhh----
Q 037717 122 VKLGHEVGYSIRFED--CTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINY---- 193 (582)
Q Consensus 122 ~~~g~~vgy~v~~~~--~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~---- 193 (582)
..++...|....... ....+.+|+|+||++|.+.+..... +.++++|||||||...-. .....+++..+..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHHHHHHHHHHhhhcc
Confidence 332222221100000 0112478999999999999877653 889999999999944322 2233333333222
Q ss_pred -CCCceEEEecccC---ChHHHHh----------hhCCCCEEeeCCc---------eeceeEE--EecCCch--------
Q 037717 194 -RPDLKLLISSATL---DAEKFSD----------YFGSAPIFKIPGR---------RYPVELF--YTKAPEV-------- 240 (582)
Q Consensus 194 -~~~~kii~~SAT~---~~~~~~~----------~f~~~~v~~i~gr---------~~~v~~~--~~~~~~~-------- 240 (582)
.+..++++||||+ +...+.+ .++. ..+..... ..|.... +......
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC-eEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 4678999999999 3222222 2221 11221110 0011110 1000000
Q ss_pred -----------------------------h---HH---------------------------------------------
Q 037717 241 -----------------------------D---YI--------------------------------------------- 243 (582)
Q Consensus 241 -----------------------------~---~~--------------------------------------------- 243 (582)
. ++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 00
Q ss_pred -------------------------------------------------HHHHHHHHHH----HhcCCCCCEEEEcCCHH
Q 037717 244 -------------------------------------------------EAAIVTALQI----HVNEPTGDILVFLTGQD 270 (582)
Q Consensus 244 -------------------------------------------------~~~~~~~~~i----~~~~~~g~iLVFl~~~~ 270 (582)
...+..+..+ ....+++++|||+++++
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0000111111 11255689999999999
Q ss_pred HHHHHHHHHHHhhhccC---CCCCCeEEEEecCCCCHHHHHHhcCCCCC-CCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 271 EIERAEEILKQRTRGLG---TKIAELIICPIYANLPTELQAKIFEPTPE-RARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 271 ~i~~~~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
.++.+++.|.+.....+ ..+.+.....+||++++++|.++++.|++ |..+|||||+++++|||+|++++||
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI----- 476 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV----- 476 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEE-----
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEE-----
Confidence 99999999976310000 01123345566899999999999999999 9999999999999999999999999
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhhh
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYHR 396 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~~ 396 (582)
.||+ |.|...|.||+|| ||.++|.||.|+++.+.+.
T Consensus 477 ---~~d~----------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 477 ---LYEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---EETC----------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred ---EeCC----------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 4553 5678899999999 9999999999999876643
No 39
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=273.48 Aligned_cols=157 Identities=45% Similarity=0.815 Sum_probs=142.8
Q ss_pred cccccC-CCCchHHHHHHHHHHHHHcCCCcCCCccchhchhhhcCCCChHHHHHHHhcccccChHHHHHHHHhhccCCCc
Q 037717 421 LVNFDF-IDPPLEEALLKAFELLYALGALNKAGQLTRVGRQMAEFPIDPKLSKTIVSLDKYKCSDEIITIAAMLFVGNSI 499 (582)
Q Consensus 421 ~~~f~~-~~~p~~~~i~~al~~L~~lgal~~~~~lT~lG~~~a~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~~ 499 (582)
...|+| +|||+.+++.+|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|++++++|+|+|++ .++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~-~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSV-QNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTS-SCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCC-Ccc
Confidence 345788 999999999999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred cccChhhHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHcCCcHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 037717 500 FYRPKDKQIYADNARMNFHLGDVGDRIALLRVYNCWRECNYSTEWCRENYIQVSSMKRARDIRDQLEGLFARVEIDTSIY 579 (582)
Q Consensus 500 f~~~~~~~~~~~~~~~~f~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~ 579 (582)
|++|.+++.+++.+|.+|... .|||++++|+|++|.+.+.+.+||++||||+++|++|.++|+||.++|++.+++..++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~-~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~ 162 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQT-EGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC 162 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBT-TBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCchhHHHHHHHHHHccCC-CChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 999999999999999999875 4999999999999999888899999999999999999999999999999999886554
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5e-32 Score=298.84 Aligned_cols=311 Identities=14% Similarity=0.127 Sum_probs=181.2
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc----------c-------chHHHHHHHHHHHHHHhCCccC
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----------E-------PRWVAAMSVAARVSQEMGVKLG 125 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll----------~-------P~r~~a~~~a~~va~~~~~~~g 125 (582)
.+..+++|.+++..+..++++++++|||||||.+...+++ . |++.++.++...+...... .|
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~ 80 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LG 80 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TT
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CC
Confidence 3567899999999999999999999999999954333321 1 9999999998887765421 12
Q ss_pred cEEeEEEeecccC------CCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecccCCCcchhHHHHHHHHHHhh----
Q 037717 126 HEVGYSIRFEDCT------SDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQERTLSTDNLFGLLKDLINY---- 193 (582)
Q Consensus 126 ~~vgy~v~~~~~~------~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~---- 193 (582)
..++......... ..+.+|+|+||++|.+.+.... .+.++++|||||||...-.. ....++...+..
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhcc
Confidence 3333221111111 1247899999999999987765 37889999999999443222 222222222221
Q ss_pred --CCCceEEEecccCCh----------HHH---HhhhCCCCEEeeCCc---------eeceeEE-EecC-Cchh------
Q 037717 194 --RPDLKLLISSATLDA----------EKF---SDYFGSAPIFKIPGR---------RYPVELF-YTKA-PEVD------ 241 (582)
Q Consensus 194 --~~~~kii~~SAT~~~----------~~~---~~~f~~~~v~~i~gr---------~~~v~~~-~~~~-~~~~------ 241 (582)
.++.++++||||+.. +.+ ...++ .+.+..... ..|.... .... ....
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 267899999999922 222 22232 222222111 0111110 0000 0000
Q ss_pred -----------------------------------HH-------------------------------------------
Q 037717 242 -----------------------------------YI------------------------------------------- 243 (582)
Q Consensus 242 -----------------------------------~~------------------------------------------- 243 (582)
+.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred ---------------------------------------------------HHHHHHHH----HHHhcCCCCCEEEEcCC
Q 037717 244 ---------------------------------------------------EAAIVTAL----QIHVNEPTGDILVFLTG 268 (582)
Q Consensus 244 ---------------------------------------------------~~~~~~~~----~i~~~~~~g~iLVFl~~ 268 (582)
...+..+. ......+.+++|||+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00001111 11222456899999999
Q ss_pred HHHHHHHHHHHHHhhhccC---CCCCCeEEEEecCCCCHHHHHHhcCCCCC-CCcEEEEeCCCCccccccCCeeEEEeCC
Q 037717 269 QDEIERAEEILKQRTRGLG---TKIAELIICPIYANLPTELQAKIFEPTPE-RARKVVLATNIAETSLTIDGIKYVIHPG 344 (582)
Q Consensus 269 ~~~i~~~~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kVivaT~iae~gidIp~v~~VID~g 344 (582)
++.++.+++.|.+...... ..+.+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI--- 475 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI--- 475 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEE---
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEE---
Confidence 9999999999987421000 01123344556789999999999999999 9999999999999999999999999
Q ss_pred cccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhh
Q 037717 345 FAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYH 395 (582)
Q Consensus 345 ~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~ 395 (582)
.||+. .|..+|.||+|| ||..+|.||.|+++.+.+
T Consensus 476 -----~~d~p----------~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 476 -----LYEYV----------GNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp -----EESCC----------SSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred -----EeCCC----------CCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 45543 445568999999 999899999999987653
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.98 E-value=2.2e-32 Score=311.07 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=190.3
Q ss_pred hcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc------------c------chHHHHHHH-HHHHHHHhC
Q 037717 61 RKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY------------E------PRWVAAMSV-AARVSQEMG 121 (582)
Q Consensus 61 r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll------------~------P~r~~a~~~-a~~va~~~~ 121 (582)
+..++.+++|.++++.+.+++++++++|||||||.+...+++ . |++.++.++ +..+.+..+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 456889999999999999999999999999999954433331 1 999999999 888887765
Q ss_pred C--ccCcEEeEEEeec--ccCCCCccEEEEChHHHHHHHHcCC-------CCCCCCceEeecccC---CCcchhHHHHHH
Q 037717 122 V--KLGHEVGYSIRFE--DCTSDKTVLKYMTDCMLLREIVIEP-------SLESYSVLIVDEAQE---RTLSTDNLFGLL 187 (582)
Q Consensus 122 ~--~~g~~vgy~v~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~-------~l~~~~~vViDE~He---R~~~~d~ll~~l 187 (582)
. .++...|.....+ .......+|+|+||++|.+.+...+ .+.++++|||||||. +.....++..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 3 3332223211110 0111468999999999998874322 378899999999992 122222222222
Q ss_pred HHHH-hhC---------CCceEEEecccCCh-------------HHHHhhhCCCCEEeeCCc--------eeceeEEE-e
Q 037717 188 KDLI-NYR---------PDLKLLISSATLDA-------------EKFSDYFGSAPIFKIPGR--------RYPVELFY-T 235 (582)
Q Consensus 188 k~~~-~~~---------~~~kii~~SAT~~~-------------~~~~~~f~~~~v~~i~gr--------~~~v~~~~-~ 235 (582)
+... ... +..++|+||||+.. ..+...++...+...... ..|...+. .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 2211 122 67899999999943 122233332111111110 01111110 0
Q ss_pred cCCc------------------------h-----hHH-------------------------------------------
Q 037717 236 KAPE------------------------V-----DYI------------------------------------------- 243 (582)
Q Consensus 236 ~~~~------------------------~-----~~~------------------------------------------- 243 (582)
.... . .|.
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 000
Q ss_pred ------------------------------------HH-------------------------HHHHHHHHHhcCC-CCC
Q 037717 244 ------------------------------------EA-------------------------AIVTALQIHVNEP-TGD 261 (582)
Q Consensus 244 ------------------------------------~~-------------------------~~~~~~~i~~~~~-~g~ 261 (582)
.. ....+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00 0001111122223 689
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCC--------CCHHHHHHhcCCCCCCCcEEEEeCCCCccccc
Q 037717 262 ILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYAN--------LPTELQAKIFEPTPERARKVVLATNIAETSLT 333 (582)
Q Consensus 262 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~v~~~~~~g~~kVivaT~iae~gid 333 (582)
+|||+++++.++.+++.|.+.. .+ ...++.+..+||+ |++++|.++++.|++|..+|||||+++++|||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~-~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENE-KF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSC-SC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEEECcHHHHHHHHHHHHhCc-cc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 9999999999999999998631 01 0125788899999 99999999999999999999999999999999
Q ss_pred cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeCh
Q 037717 334 IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTL 391 (582)
Q Consensus 334 Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~ 391 (582)
+|++++|| .||+ |.|..+|.||+|||||.| +.++.+++.
T Consensus 480 ip~v~~VI--------~~d~----------p~s~~~~~Qr~GRArr~g-~~~~l~~~~ 518 (699)
T 4gl2_A 480 IKECNIVI--------RYGL----------VTNEIAMVQARGRARADE-STYVLVAHS 518 (699)
T ss_dssp CCSCCCCE--------EESC----------CCCHHHHHHHHTTSCSSS-CEEEEEEES
T ss_pred cccCCEEE--------EeCC----------CCCHHHHHHHcCCCCCCC-ceEEEEEeC
Confidence 99999999 4553 457788999999988765 444444443
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1e-30 Score=301.36 Aligned_cols=313 Identities=14% Similarity=0.118 Sum_probs=166.6
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc----------c-------chHHHHHHHHHHHHHHh---CC
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----------E-------PRWVAAMSVAARVSQEM---GV 122 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll----------~-------P~r~~a~~~a~~va~~~---~~ 122 (582)
....+++|.+++..+..++++++++|||||||.+...+++ . |++.++.++...+.... +.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 4557899999999999999999999999999954433322 1 99999999988777654 33
Q ss_pred ccCcEEeEEEeec--ccCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhh-----
Q 037717 123 KLGHEVGYSIRFE--DCTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINY----- 193 (582)
Q Consensus 123 ~~g~~vgy~v~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~----- 193 (582)
.++...|...... .....+.+|+|+||++|.+.+..... +.++++|||||||...-.. ....+++.....
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 3322222110000 01113578999999999999876543 7889999999999433222 233333333322
Q ss_pred CCCceEEEecccCCh----------HHH---HhhhCCCCEEeeCCc--------eeceeEE--EecCC------------
Q 037717 194 RPDLKLLISSATLDA----------EKF---SDYFGSAPIFKIPGR--------RYPVELF--YTKAP------------ 238 (582)
Q Consensus 194 ~~~~kii~~SAT~~~----------~~~---~~~f~~~~v~~i~gr--------~~~v~~~--~~~~~------------ 238 (582)
.+..++++||||+.. +.+ ...++...+...... ..|.... +....
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999921 122 222322111111100 0000000 00000
Q ss_pred -------------------------chh---HH-----------------------------------------------
Q 037717 239 -------------------------EVD---YI----------------------------------------------- 243 (582)
Q Consensus 239 -------------------------~~~---~~----------------------------------------------- 243 (582)
... ++
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 000 00
Q ss_pred -----------------------------------------------HHHHHHHHHH----HhcCCCCCEEEEcCCHHHH
Q 037717 244 -----------------------------------------------EAAIVTALQI----HVNEPTGDILVFLTGQDEI 272 (582)
Q Consensus 244 -----------------------------------------------~~~~~~~~~i----~~~~~~g~iLVFl~~~~~i 272 (582)
...+..+..+ ....+++++|||+++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0000111111 1225568999999999999
Q ss_pred HHHHHHHHHhhhccCC---CCCCeEEEEecCCCCHHHHHHhcCCCCC-CCcEEEEeCCCCccccccCCeeEEEeCCcccc
Q 037717 273 ERAEEILKQRTRGLGT---KIAELIICPIYANLPTELQAKIFEPTPE-RARKVVLATNIAETSLTIDGIKYVIHPGFAKV 348 (582)
Q Consensus 273 ~~~~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kVivaT~iae~gidIp~v~~VID~g~~k~ 348 (582)
+.+++.|.+.....+. .+.+.....+||++++++|.++++.|++ |..+|||||+++++|||+|++++||
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI------- 717 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV------- 717 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE-------
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE-------
Confidence 9999999763110000 0123345567999999999999999999 9999999999999999999999999
Q ss_pred eeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhh
Q 037717 349 KSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYH 395 (582)
Q Consensus 349 ~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~ 395 (582)
.||+ |.|..+|.||+|| ||..+|.||+|+++.+.+
T Consensus 718 -~yd~----------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 718 -LYEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp -EESC----------CSCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred -EeCC----------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 4553 4677889999999 999999999999987653
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.5e-29 Score=299.44 Aligned_cols=290 Identities=18% Similarity=0.183 Sum_probs=208.1
Q ss_pred CCCChHHHHHHHHHHhC----CC--eEEEECCCCCchhchHhhhhc----c--------chHHHHHHHHHHHHHHhCCcc
Q 037717 63 TLPIYPFWEELLQAVSG----YP--VLAIVGETGSGKTTQIPQYLY----E--------PRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~----~~--~viv~a~TGSGKTt~ip~~ll----~--------P~r~~a~~~a~~va~~~~~~~ 124 (582)
.....++|.++++.+.. ++ +++++||||||||.++..+++ . |++++|.|.+.++.+.+.. .
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~-~ 679 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN-W 679 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT-T
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhc-C
Confidence 33358899999988765 55 899999999999965433221 1 9999999999998876642 2
Q ss_pred CcEEeEEEeeccc----------CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhC
Q 037717 125 GHEVGYSIRFEDC----------TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYR 194 (582)
Q Consensus 125 g~~vgy~v~~~~~----------~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~ 194 (582)
+..+++-.++... .....+|+++|++.|. .+..+.++++|||||+|..+... ...++. .+
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~~---~~~l~~---l~ 749 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVRH---KERIKA---MR 749 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHHH---HHHHHH---HH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChHH---HHHHHH---hc
Confidence 3344443322111 1235899999998653 33458999999999999755432 222222 34
Q ss_pred CCceEEEecccCChHHHHhhhCCCCEEe-e---CCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Q 037717 195 PDLKLLISSATLDAEKFSDYFGSAPIFK-I---PGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQD 270 (582)
Q Consensus 195 ~~~kii~~SAT~~~~~~~~~f~~~~v~~-i---~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 270 (582)
++.++++||||+.+..+...+.+..-.. + +....++..++.......... .++... ..+++++|||++.+
T Consensus 750 ~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~----~il~~l--~~g~qvlvf~~~v~ 823 (1151)
T 2eyq_A 750 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE----AILREI--LRGGQVYYLYNDVE 823 (1151)
T ss_dssp TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHH----HHHHHH--TTTCEEEEECCCSS
T ss_pred CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHH----HHHHHH--hcCCeEEEEECCHH
Confidence 6789999999997666665554332211 1 223345555554433322221 222222 34689999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCccccee
Q 037717 271 EIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKS 350 (582)
Q Consensus 271 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~ 350 (582)
+++.+++.|.+.. ++..+..+||+|++++|+++++.|++|+.+|||||+++++|||+|++++|| .
T Consensus 824 ~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI--------i 888 (1151)
T 2eyq_A 824 NIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII--------I 888 (1151)
T ss_dssp CHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE--------E
T ss_pred HHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE--------E
Confidence 9999999998753 467799999999999999999999999999999999999999999999999 3
Q ss_pred ecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhh
Q 037717 351 YNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHN 393 (582)
Q Consensus 351 yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~ 393 (582)
+++. +.+.+++.||+||+||.| +|.||.+++...
T Consensus 889 ~~~~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 889 ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTTT---------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred eCCC---------CCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 3321 235568999999999988 599999998653
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.2e-30 Score=295.90 Aligned_cols=290 Identities=17% Similarity=0.212 Sum_probs=196.3
Q ss_pred cCCCChHHHHHHHHHHhCC------CeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCc
Q 037717 62 KTLPIYPFWEELLQAVSGY------PVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVK 123 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~------~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~ 123 (582)
......++|.+++..+..+ .+++++||||||||.....+++. |++++|.|.+.++.+... .
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~-~ 443 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFS-K 443 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHT-C
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhh-h
Confidence 3446789999988887654 57899999999999766555443 999999999999887763 2
Q ss_pred cCcEEeEEEeecc----------cCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 124 LGHEVGYSIRFED----------CTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 124 ~g~~vgy~v~~~~----------~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
.|..++.-..... ..+...+|+|+|++.+.+ ...+.++++|||||+|..+.... ..+...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~~~ 513 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALMNK 513 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCSS
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHHHh
Confidence 2334443222111 112358999999997743 44589999999999996543321 111223
Q ss_pred CCCceEEEecccCChHHHHh-hhCCCCEEee---CCceeceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 037717 194 RPDLKLLISSATLDAEKFSD-YFGSAPIFKI---PGRRYPVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQ 269 (582)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~-~f~~~~v~~i---~gr~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 269 (582)
..+.++++||||+.+..++. ++++..+..+ +....|+...+...... ......+... ...+++++|||+..
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~l~~~i~~~--l~~g~qvlVf~~~i 588 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRV---NEVYEFVRQE--VMRGGQAFIVYPLI 588 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTH---HHHHHHHHHH--TTTSCCBCCBCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchH---HHHHHHHHHH--HhcCCcEEEEecch
Confidence 35789999999997776664 4555443333 22234565554443322 2222222221 13468899999976
Q ss_pred HHH--------HHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEE
Q 037717 270 DEI--------ERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVI 341 (582)
Q Consensus 270 ~~i--------~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VI 341 (582)
++. +.+++.|.+. ..+++.+..+||+|++++|+++++.|++|..+|||||+++|+|||+|++++||
T Consensus 589 e~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 589 EESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp --------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 554 3333333320 22467788999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeC
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYT 390 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~ 390 (582)
.||+.. .+.+++.||+||+||.| +|.|+.+++
T Consensus 663 --------i~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 663 --------IENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp --------BCSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred --------EeCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 444432 24457899999999987 599999998
No 45
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1.9e-29 Score=294.28 Aligned_cols=313 Identities=14% Similarity=0.129 Sum_probs=166.5
Q ss_pred cCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc----------c-------chHHHHHHHHHHHHHHh---C
Q 037717 62 KTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY----------E-------PRWVAAMSVAARVSQEM---G 121 (582)
Q Consensus 62 ~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll----------~-------P~r~~a~~~a~~va~~~---~ 121 (582)
.....+++|.+++..+..++++++++|||||||.+...+++ . |++.++.++...+.... +
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 35668899999999999999999999999999955433322 1 99999999988777654 3
Q ss_pred CccCcEEeEEEeec--ccCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhh----
Q 037717 122 VKLGHEVGYSIRFE--DCTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINY---- 193 (582)
Q Consensus 122 ~~~g~~vgy~v~~~--~~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~---- 193 (582)
..++...|...... .....+.+|+|+||++|.+.+..... +.++++|||||||...-. .....+++.....
T Consensus 325 ~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~-~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC-ccHHHHHHHHHHHhhcc
Confidence 33322222110000 00112568999999999999876544 788999999999943322 2233333333322
Q ss_pred -CCCceEEEecccCC---h-------HHHH---hhhCCCCEEeeCCc---------eeceeEE--EecC-----------
Q 037717 194 -RPDLKLLISSATLD---A-------EKFS---DYFGSAPIFKIPGR---------RYPVELF--YTKA----------- 237 (582)
Q Consensus 194 -~~~~kii~~SAT~~---~-------~~~~---~~f~~~~v~~i~gr---------~~~v~~~--~~~~----------- 237 (582)
.+..++++||||+. . +.+. ..++. ..+..... ..|.... +...
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~-~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCC-ceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 56789999999992 1 1111 22221 11111100 0000000 0000
Q ss_pred -----------------------------------------------Cch------------------------------
Q 037717 238 -----------------------------------------------PEV------------------------------ 240 (582)
Q Consensus 238 -----------------------------------------------~~~------------------------------ 240 (582)
+..
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 000
Q ss_pred ------hHHH----------------------------------------HHHHHHHHHHh----cCCCCCEEEEcCCHH
Q 037717 241 ------DYIE----------------------------------------AAIVTALQIHV----NEPTGDILVFLTGQD 270 (582)
Q Consensus 241 ------~~~~----------------------------------------~~~~~~~~i~~----~~~~g~iLVFl~~~~ 270 (582)
.++. ..+..+..+.. ..+++++|||+++++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 0000 00011111111 244689999999999
Q ss_pred HHHHHHHHHHHhhh--ccC-CCCCCeEEEEecCCCCHHHHHHhcCCCCC-CCcEEEEeCCCCccccccCCeeEEEeCCcc
Q 037717 271 EIERAEEILKQRTR--GLG-TKIAELIICPIYANLPTELQAKIFEPTPE-RARKVVLATNIAETSLTIDGIKYVIHPGFA 346 (582)
Q Consensus 271 ~i~~~~~~L~~~~~--~~~-~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kVivaT~iae~gidIp~v~~VID~g~~ 346 (582)
.++.+++.|.+... .+. ..+.+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI----- 717 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV----- 717 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE-----
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE-----
Confidence 99999999987411 000 00123445567999999999999999999 9999999999999999999999999
Q ss_pred cceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhhh
Q 037717 347 KVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNYH 395 (582)
Q Consensus 347 k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~~ 395 (582)
.||+ |-|..+|.||+|| ||.++|.||.|+++...+
T Consensus 718 ---~yD~----------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 718 ---LYEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ---EESC----------CSCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred ---EeCC----------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 5554 4566789999999 999999999999987654
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=4.4e-30 Score=302.30 Aligned_cols=264 Identities=14% Similarity=0.110 Sum_probs=179.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHHHhCCcc
Q 037717 57 LQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQEMGVKL 124 (582)
Q Consensus 57 ~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~~~~~~~ 124 (582)
..+........+.|.+++..+..+++++++||||||||+..-..++. |+|.+|.|++.++.+ ++ ..
T Consensus 70 ~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~ 147 (1104)
T 4ddu_A 70 FFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DE 147 (1104)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CT
T ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CC
Confidence 34444556788999999999999999999999999999632222111 999999999999887 44 44
Q ss_pred CcEEeEEEeeccc---------C-CCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccC--------------CCcch
Q 037717 125 GHEVGYSIRFEDC---------T-SDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQE--------------RTLST 180 (582)
Q Consensus 125 g~~vgy~v~~~~~---------~-~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~He--------------R~~~~ 180 (582)
|..++.-....+. . ....+|+|+|||+|++.+.. ..+.++++|||||||. .+...
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 5555554332222 0 12489999999999887653 3378999999999993 22222
Q ss_pred hHHHHHHHHHH--------hhCCCceEEEecccCChH-----HHHhhhCCCCEEeeCCceeceeEEEecCCchhHHHHHH
Q 037717 181 DNLFGLLKDLI--------NYRPDLKLLISSATLDAE-----KFSDYFGSAPIFKIPGRRYPVELFYTKAPEVDYIEAAI 247 (582)
Q Consensus 181 d~ll~~lk~~~--------~~~~~~kii~~SAT~~~~-----~~~~~f~~~~v~~i~gr~~~v~~~~~~~~~~~~~~~~~ 247 (582)
+.+-.+++.+- ...++.++++||||+.++ .+.++++ ..+.........+...|........+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k~~~L~--- 302 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKLV--- 302 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCCHHHHH---
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCHHHHHH---
Confidence 21122222111 011678999999995222 2333332 111111112233444554443322221
Q ss_pred HHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEE-EecCCCCHHHHHHhcCCCCCCCcEEEEe--
Q 037717 248 VTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIIC-PIYANLPTELQAKIFEPTPERARKVVLA-- 324 (582)
Q Consensus 248 ~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~~~~g~~kViva-- 324 (582)
.++.. .++++||||++++.++.+++.|.. .++.+. .+||. |++ ++.|++|..+||||
T Consensus 303 -~ll~~----~~~~~LVF~~s~~~a~~l~~~L~~---------~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 303 -ELLEI----FRDGILIFAQTEEEGKELYEYLKR---------FKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp -HHHHH----HCSSEEEEESSSHHHHHHHHHHHH---------TTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEET
T ss_pred -HHHHh----cCCCEEEEECcHHHHHHHHHHHHh---------CCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEec
Confidence 12221 248999999999999999999987 356787 89992 555 99999999999999
Q ss_pred --CCCCccccccCC-eeEEEeCCccc
Q 037717 325 --TNIAETSLTIDG-IKYVIHPGFAK 347 (582)
Q Consensus 325 --T~iae~gidIp~-v~~VID~g~~k 347 (582)
|+++++|||+|+ |++||++|+++
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999988
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.2e-29 Score=298.70 Aligned_cols=265 Identities=16% Similarity=0.150 Sum_probs=167.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc-hHhhhhc--c---------chHHHHHHHHHHHHHHhC
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT-QIPQYLY--E---------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt-~ip~~ll--~---------P~r~~a~~~a~~va~~~~ 121 (582)
+.+.......++. ++|.+++..+.++++++++||||||||+ ++|.+.. . |+|.+|.|++..+.....
T Consensus 46 ~~~~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 46 FVEFFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHHHHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3344444444555 9999999999999999999999999994 4443321 1 999999999888776543
Q ss_pred CccCc----EEeEEEeec---------ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccC---CCcchhHHHH
Q 037717 122 VKLGH----EVGYSIRFE---------DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQE---RTLSTDNLFG 185 (582)
Q Consensus 122 ~~~g~----~vgy~v~~~---------~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~He---R~~~~d~ll~ 185 (582)
. .|. .++.-.... ..... ++|+|+|||+|++.+.. |.++++|||||||. ++.+.+.++.
T Consensus 125 ~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~ 199 (1054)
T 1gku_B 125 K-AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLH 199 (1054)
T ss_dssp T-TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHH
T ss_pred h-cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHH
Confidence 2 222 333221111 11122 89999999999987654 78999999999993 2211111211
Q ss_pred HHHHH-----HhhCCCceEEEecccCCh-HHHH-hhhCCCCEEeeCCce---eceeEEEecCCchhHHHHHHHHHHHHHh
Q 037717 186 LLKDL-----INYRPDLKLLISSATLDA-EKFS-DYFGSAPIFKIPGRR---YPVELFYTKAPEVDYIEAAIVTALQIHV 255 (582)
Q Consensus 186 ~lk~~-----~~~~~~~kii~~SAT~~~-~~~~-~~f~~~~v~~i~gr~---~~v~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (582)
.+... ....+..+++++|||+.. ..+. .+++....+.+.... .++...+......+.+ ..+..
T Consensus 200 ~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L-------~~ll~ 272 (1054)
T 1gku_B 200 LLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTL-------SSILE 272 (1054)
T ss_dssp HTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTT-------HHHHT
T ss_pred HhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHH-------HHHHh
Confidence 11100 001245688999999933 3222 222211112222221 2244444433222222 12222
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEe----CCCCccc
Q 037717 256 NEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLA----TNIAETS 331 (582)
Q Consensus 256 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViva----T~iae~g 331 (582)
. .++++||||+++++++.+++.|.+ . +.+..+||++. .+++.|++|..+|||| ||++++|
T Consensus 273 ~-~~~~~LVF~~t~~~a~~l~~~L~~---------~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 273 K-LGTGGIIYARTGEEAEEIYESLKN---------K-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp T-SCSCEEEEESSHHHHHHHHHTTTT---------S-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CC
T ss_pred h-cCCCEEEEEcCHHHHHHHHHHHhh---------c-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 2 257899999999999999988865 2 67899999983 6677789999999999 9999999
Q ss_pred cccCCe-eEEEeCCccc
Q 037717 332 LTIDGI-KYVIHPGFAK 347 (582)
Q Consensus 332 idIp~v-~~VID~g~~k 347 (582)
||+|+| ++||++|.++
T Consensus 337 IDip~VI~~VI~~~~P~ 353 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPS 353 (1054)
T ss_dssp SCCTTTCCEEEEESCCE
T ss_pred cccCCcccEEEEeCCCc
Confidence 999995 9999999983
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=2.8e-29 Score=272.44 Aligned_cols=285 Identities=17% Similarity=0.144 Sum_probs=195.9
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcEEeEEEe
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHEVGYSIR 133 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~ 133 (582)
.++++++|.++++++..++.+++++|||||||.+...++.. |++.++.|++.++.+ ++.. .++.-
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v~~~-- 164 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGI-FGEE---YVGEF-- 164 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGG-GCGG---GEEEB--
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHh-CCCc---ceEEE--
Confidence 45689999999999999999999999999999766555443 999999999888877 5433 03321
Q ss_pred ecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCC-----h
Q 037717 134 FEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLD-----A 208 (582)
Q Consensus 134 ~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~-----~ 208 (582)
........+|+++|++.+...+.. ...++++|||||+|.- ....+ +.+....+..++++||||+. .
T Consensus 165 -~g~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~~-~~~~~-----~~~~~~~~~~~~l~lSATp~~~~~~~ 235 (472)
T 2fwr_A 165 -SGRIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAESY-----VQIAQMSIAPFRLGLTATFEREDGRH 235 (472)
T ss_dssp -SSSCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGGT-TSTTT-----HHHHHTCCCSEEEEEESCCCCTTSGG
T ss_pred -CCCcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcCC-CChHH-----HHHHHhcCCCeEEEEecCccCCCCHH
Confidence 222334678999999998876531 1356999999999942 22222 23444556789999999993 1
Q ss_pred HHHHhhhCCCCEEeeC-----Cc-eecee--EEEecCCch----------------------------------------
Q 037717 209 EKFSDYFGSAPIFKIP-----GR-RYPVE--LFYTKAPEV---------------------------------------- 240 (582)
Q Consensus 209 ~~~~~~f~~~~v~~i~-----gr-~~~v~--~~~~~~~~~---------------------------------------- 240 (582)
..+..+++. .+.... ++ ..+.. .........
T Consensus 236 ~~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (472)
T 2fwr_A 236 EILKEVVGG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDE 314 (472)
T ss_dssp GSHHHHTCC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSS
T ss_pred HHHHHHhCC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCH
Confidence 124445542 111100 00 00000 000000000
Q ss_pred ----hH------------HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCH
Q 037717 241 ----DY------------IEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPT 304 (582)
Q Consensus 241 ----~~------------~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~ 304 (582)
.. .......+..+.....++++|||+++.+.++.+++.|. +..+||+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~ 380 (472)
T 2fwr_A 315 RAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSR 380 (472)
T ss_dssp SSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCS
T ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCH
Confidence 00 00112233334444567899999999999999887762 3468999999
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCC-
Q 037717 305 ELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPG- 383 (582)
Q Consensus 305 ~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G- 383 (582)
++|+++++.|++|..+|||||+++++|+|+|++++|| .|| .|.|..++.||+|||||.|+|
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi--------~~~----------~~~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV--------IMS----------GSGSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE--------EEC----------CSSCCHHHHHHHHHSBCCCTTT
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEE--------EEC----------CCCCHHHHHHHHhhccCCCCCC
Confidence 9999999999999999999999999999999999999 343 345677899999999999987
Q ss_pred ---eEEEeeChhhhh
Q 037717 384 ---KCFRLYTLHNYH 395 (582)
Q Consensus 384 ---~~~~L~~~~~~~ 395 (582)
.+|.++++...+
T Consensus 443 ~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 443 KEAVLYELISRGTGE 457 (472)
T ss_dssp CCEEEEEEEECSCC-
T ss_pred ceEEEEEEEeCCCch
Confidence 467777765544
No 49
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=242.27 Aligned_cols=170 Identities=38% Similarity=0.663 Sum_probs=155.5
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-----------------chHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-----------------PRWVAAMSVAA 114 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-----------------P~r~~a~~~a~ 114 (582)
..+.++.+.|..+|++++|.+++..+.++++++++|||||||||++++++++ |+|++|.++++
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~ 127 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAE 127 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHH
Confidence 4456778889999999999999999999999999999999999988877653 99999999999
Q ss_pred HHHHHhCCccCcEEeEEEeecccCC-CCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh
Q 037717 115 RVSQEMGVKLGHEVGYSIRFEDCTS-DKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY 193 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~~~~-~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~ 193 (582)
+++..++..+|..+||.++++.... .+++|+|+|||+|++.+.. .+.++++|||||||+|+++.++++..++.+...
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 128 RVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp HHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 9999999999999999999887765 6789999999999999876 489999999999999999999999999999988
Q ss_pred CCCceEEEecccCChHHHHhhhCCCCEEee
Q 037717 194 RPDLKLLISSATLDAEKFSDYFGSAPIFKI 223 (582)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~f~~~~v~~i 223 (582)
+++.|+++||||++.+.+++||+++|++.+
T Consensus 206 ~~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp CTTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred CCCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 899999999999988889999999998764
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=1.5e-28 Score=269.29 Aligned_cols=290 Identities=10% Similarity=0.055 Sum_probs=190.0
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEe
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVG 129 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vg 129 (582)
....+++|.++++.+..+++++++||||||||.+...++.. |++.++.+..+++.. ++...+..++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~ 189 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIK 189 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceE
Confidence 34679999999999988899999999999999665443321 999999999988854 3322222333
Q ss_pred EEEeeccc---CCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEeccc
Q 037717 130 YSIRFEDC---TSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSAT 205 (582)
Q Consensus 130 y~v~~~~~---~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT 205 (582)
.-.++... .....+|+++|++.|.+. ....+.++++|||||+|.-+. . .+..+++ ..+..++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~~-~-----~~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLATG-K-----SISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp ECGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCCH-H-----HHHHHGGGCTTCCEEEEEESC
T ss_pred EEecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCCc-c-----cHHHHHHhcccCcEEEEEEeC
Confidence 22121111 115689999999976543 112378899999999994332 1 2333333 3467799999999
Q ss_pred CCh-----HHHHhhhCCCCEEeeCC-------ceeceeEE--EecCCc--------hhHHH------------HHHHHHH
Q 037717 206 LDA-----EKFSDYFGSAPIFKIPG-------RRYPVELF--YTKAPE--------VDYIE------------AAIVTAL 251 (582)
Q Consensus 206 ~~~-----~~~~~~f~~~~v~~i~g-------r~~~v~~~--~~~~~~--------~~~~~------------~~~~~~~ 251 (582)
+.. -.+..+|+. .++.++. ...+.... ....+. ..|.. ..+...+
T Consensus 262 p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 340 (510)
T 2oca_A 262 LRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340 (510)
T ss_dssp GGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHH
Confidence 921 123445542 1212211 11111111 111111 11111 1111112
Q ss_pred HHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeC-CCCcc
Q 037717 252 QIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLAT-NIAET 330 (582)
Q Consensus 252 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT-~iae~ 330 (582)
.......+..++||++ .++++.+++.|.+. +..+..+||++++++|+++++.|.+|..+||||| +++++
T Consensus 341 ~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 341 IKLAQKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHTTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHhcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 2222223445666666 88888888888762 2368899999999999999999999999999999 99999
Q ss_pred ccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCe-EEEeeC
Q 037717 331 SLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGK-CFRLYT 390 (582)
Q Consensus 331 gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~-~~~L~~ 390 (582)
|+|+|++++|| .|+ .|.|.+++.||+||+||.|+|. ++.+|+
T Consensus 411 GiDip~v~~vi--------~~~----------~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVV--------LAH----------GVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEE--------ESS----------CCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEE--------EeC----------CCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999 333 3345678999999999999864 666665
No 51
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=8.5e-26 Score=252.29 Aligned_cols=106 Identities=23% Similarity=0.169 Sum_probs=92.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC---
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID--- 335 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp--- 335 (582)
+.++||||.|++.++.+++.|.. .++.+..+||++.+.++..+.+.++.| .|+||||+|++|+||+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~---------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~ 500 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN---------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGE 500 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT---------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCT
T ss_pred CCcEEEEECCHHHHHHHHHHHHH---------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccc
Confidence 56899999999999999999987 467788999999999998888888776 6999999999999999
Q ss_pred -----CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 336 -----GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 336 -----~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
++.+||++. .|-|...|.||+||+||.|. |.++.+++.++
T Consensus 501 ~V~~~ggl~VIn~d------------------~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 501 GVKELGGLAVVGTE------------------RHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSGGGTSEEEEESS------------------CCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhcCCcEEEEec------------------CCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 899999443 35677889999999999995 99988888654
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=3e-26 Score=255.51 Aligned_cols=289 Identities=15% Similarity=0.135 Sum_probs=169.4
Q ss_pred CCChHHHHHHHHHHhC-----CCeEEEECCCCCchhchHhhhhc-------------c--------chHHHHHHHHHHHH
Q 037717 64 LPIYPFWEELLQAVSG-----YPVLAIVGETGSGKTTQIPQYLY-------------E--------PRWVAAMSVAARVS 117 (582)
Q Consensus 64 lPi~~~~~~il~~i~~-----~~~viv~a~TGSGKTt~ip~~ll-------------~--------P~r~~a~~~a~~va 117 (582)
...+++|.+++..+.+ ++.+++++|||||||.++..++. . |++.++.|......
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3578899999887754 57789999999999955433221 2 88999888762222
Q ss_pred HHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc-----CCCCCCCCceEeecccCCCcchhHHHHHHHHHHh
Q 037717 118 QEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI-----EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN 192 (582)
Q Consensus 118 ~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~-----~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~ 192 (582)
.. .|..++.. .......+.+|+++|++.|.+.... ......+++||||||| |....+ ...++.++.
T Consensus 257 ~~----~~~~~~~~--~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~ 327 (590)
T 3h1t_A 257 TP----FGDARHKI--EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILE 327 (590)
T ss_dssp TT----TCSSEEEC--CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHH
T ss_pred Hh----cchhhhhh--hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHH
Confidence 22 22222211 1223345689999999999876532 1225678999999999 443321 123344455
Q ss_pred hCCCceEEEecccC---ChHHHHhhhCCCCEEeeC-------CceeceeEEEecC--C----------------------
Q 037717 193 YRPDLKLLISSATL---DAEKFSDYFGSAPIFKIP-------GRRYPVELFYTKA--P---------------------- 238 (582)
Q Consensus 193 ~~~~~kii~~SAT~---~~~~~~~~f~~~~v~~i~-------gr~~~v~~~~~~~--~---------------------- 238 (582)
..+..++++||||+ +...+..+|+. ++.... |...|........ .
T Consensus 328 ~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 328 YFEPAFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred hCCcceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 55678899999998 33556778864 333211 1111111111000 0
Q ss_pred --chhH---------HHHHHHHHHHHH-hcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHH
Q 037717 239 --EVDY---------IEAAIVTALQIH-VNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTEL 306 (582)
Q Consensus 239 --~~~~---------~~~~~~~~~~i~-~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 306 (582)
..+. .......+.... ...+.+++||||++++.++.+++.|.+........ ..-.+..+||+++ ++
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~-~~ 484 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEG-KI 484 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTH-HH
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCCh-HH
Confidence 0000 001111122211 22456899999999999999999998754321111 1123677899875 47
Q ss_pred HHHhcCCCCCCCcE---EEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC
Q 037717 307 QAKIFEPTPERARK---VVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP 382 (582)
Q Consensus 307 r~~v~~~~~~g~~k---VivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 382 (582)
|+.+++.|++|..+ |++||+++++|+|+|++++|| .|+ .|.|...|.||+||+||.++
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi--------~~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVV--------LAR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEE--------EES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEE--------EEe----------cCCChHHHHHHHhhhcccCc
Confidence 89999999987765 889999999999999999999 333 35678889999999999886
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=5.4e-25 Score=245.16 Aligned_cols=108 Identities=20% Similarity=0.153 Sum_probs=93.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCC
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDG 336 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~ 336 (582)
..+.++||||+|++.++.+++.|.. .++....+||...+.++..+.+.++.| .|+||||+|++|+||+.
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~---------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTK---------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHH---------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCT
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHH---------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccC
Confidence 3457899999999999999999988 477788999999988998899999988 69999999999999997
Q ss_pred --------------------------------e-----eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCC
Q 037717 337 --------------------------------I-----KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSER 379 (582)
Q Consensus 337 --------------------------------v-----~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR 379 (582)
| .+||++. .|-|+..|.||+||+||
T Consensus 508 ~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te------------------~pes~riy~qr~GRTGR 569 (853)
T 2fsf_A 508 GGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTE------------------RHESRRIDNQLRGRSGR 569 (853)
T ss_dssp TCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESS------------------CCSSHHHHHHHHTTSSG
T ss_pred CCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEcc------------------CCCCHHHHHhhcccccc
Confidence 3 6999443 36778889999999999
Q ss_pred CCC-CeEEEeeChhh
Q 037717 380 TGP-GKCFRLYTLHN 393 (582)
Q Consensus 380 ~~~-G~~~~L~~~~~ 393 (582)
.|. |.+..+.+.++
T Consensus 570 qGd~G~s~~fls~eD 584 (853)
T 2fsf_A 570 QGDAGSSRFYLSMED 584 (853)
T ss_dssp GGCCEEEEEEEETTS
T ss_pred CCCCeeEEEEecccH
Confidence 995 99887776543
No 54
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=3.5e-25 Score=214.46 Aligned_cols=167 Identities=16% Similarity=0.200 Sum_probs=137.5
Q ss_pred HHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCC
Q 037717 249 TALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIA 328 (582)
Q Consensus 249 ~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ia 328 (582)
.+..++...+++++||||+++++++.+++.|.. .++.+.++||++++++|+++++.|++|.++|||||+++
T Consensus 21 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 21 VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHH---------HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH---------cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 344444445578999999999999999999987 36779999999999999999999999999999999999
Q ss_pred ccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhhh-----------
Q 037717 329 ETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYHR----------- 396 (582)
Q Consensus 329 e~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~~----------- 396 (582)
++|+|+|++++||++|+ |.|..+|.||+|||||.| +|.|+.+|+..+...
T Consensus 92 ~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp TCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred hcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999996554 567889999999999998 699999999876321
Q ss_pred ---hhh--hhhHhhhh--HHHHHHHHhcCCccccc-----cCCCCchHHHHHHHHHHH
Q 037717 397 ---IWM--TILCQKYN--ELIWKMLSLFSNVLVNF-----DFIDPPLEEALLKAFELL 442 (582)
Q Consensus 397 ---~~~--~pei~r~~--~~~L~l~~l~~~~~~~f-----~~~~~p~~~~i~~al~~L 442 (582)
+.. .||+.+.. .+++.++.++..+...| +++++|+.+.+..|+..|
T Consensus 154 ~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 154 FKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 111 37787776 77788887776555445 567888889999888766
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=1.1e-23 Score=234.81 Aligned_cols=295 Identities=18% Similarity=0.123 Sum_probs=188.2
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhh--cc--------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYL--YE--------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~l--l~--------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
.+-.++.|...+..+.+++ |..++||+||| ..+|.++ +. |+|.+|.+.++.+.... ..+|..||.
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~-~~lGLsv~~ 185 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVH-RFLGLQVGV 185 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCeEEE
Confidence 3455677777777788887 88999999999 5666654 22 99999999877655432 233444543
Q ss_pred EEeecc----cCCCCccEEEEChHHH-HHHHHcC-------CCCCCCCceEeecccCCCc-c---------------hhH
Q 037717 131 SIRFED----CTSDKTVLKYMTDCML-LREIVIE-------PSLESYSVLIVDEAQERTL-S---------------TDN 182 (582)
Q Consensus 131 ~v~~~~----~~~~~t~I~~~T~g~L-l~~l~~~-------~~l~~~~~vViDE~HeR~~-~---------------~d~ 182 (582)
-..+.+ ...-+++|+|+|||.| .+.+... ..+.++.++|||||| +.+ + +++
T Consensus 186 i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~~~~~~~ 264 (922)
T 1nkt_A 186 ILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPADGASNW 264 (922)
T ss_dssp CCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEECCCCHHH
T ss_pred EeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCCCcchhH
Confidence 222111 1112478999999999 5665543 237899999999999 222 1 222
Q ss_pred HHHHHHHHHhhC----------CCceEE-----------------EecccCC--hHHH-----Hh-hhC--------CCC
Q 037717 183 LFGLLKDLINYR----------PDLKLL-----------------ISSATLD--AEKF-----SD-YFG--------SAP 219 (582)
Q Consensus 183 ll~~lk~~~~~~----------~~~kii-----------------~~SAT~~--~~~~-----~~-~f~--------~~~ 219 (582)
...+..++..- ++.++. ++|||.. ...+ +. +|. +..
T Consensus 265 -y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~ 343 (922)
T 1nkt_A 265 -YTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGE 343 (922)
T ss_dssp -HHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSC
T ss_pred -HHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCc
Confidence 22333333322 345666 7889862 1222 11 121 111
Q ss_pred EEeeC--------Ccee--------------------------------------------------------ceeEEEe
Q 037717 220 IFKIP--------GRRY--------------------------------------------------------PVELFYT 235 (582)
Q Consensus 220 v~~i~--------gr~~--------------------------------------------------------~v~~~~~ 235 (582)
++.+. ||.+ .+.+...
T Consensus 344 vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~I 423 (922)
T 1nkt_A 344 VLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSI 423 (922)
T ss_dssp EEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEEC
T ss_pred eEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEe
Confidence 21111 1110 0000000
Q ss_pred cC---------------CchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecC
Q 037717 236 KA---------------PEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYA 300 (582)
Q Consensus 236 ~~---------------~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 300 (582)
+. ...+.....+..+...+ ..+.++|||+.|++.++.+++.|.. .++....+||
T Consensus 424 Ptn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~---------~Gi~~~vLna 492 (922)
T 1nkt_A 424 PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTK---------RRIPHNVLNA 492 (922)
T ss_dssp CCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHH---------TTCCCEEECS
T ss_pred CCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH---------CCCCEEEecC
Confidence 00 11111222222222222 2356899999999999999999988 4777889999
Q ss_pred CCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCe-------------------------------------------
Q 037717 301 NLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGI------------------------------------------- 337 (582)
Q Consensus 301 ~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v------------------------------------------- 337 (582)
+..+.++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 99888888888999888 699999999999999975
Q ss_pred ---------eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 338 ---------KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 338 ---------~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
.+||++. .|-|+..|.||+||+||.|. |.+..+.+.++
T Consensus 571 ~~~V~~~GGlhVI~te------------------~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTE------------------RHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HHHHHHTTSEEEEECS------------------CCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred hhHHHhcCCcEEEecc------------------CCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 5899433 46778889999999999995 99887777543
No 56
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1.7e-24 Score=219.98 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=144.7
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHh
Q 037717 231 ELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKI 310 (582)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 310 (582)
+.+|...+..+.++ .+..++....++++||||+++++++.+++.|.. .++.+.++||+|++++|+++
T Consensus 4 ~~~~i~~~~~~K~~----~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~---------~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 4 EEEAVPAPVRGRLE----VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp EEEEEECCSSSHHH----HHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHT---------TTCCEEEECSCCCTHHHHHH
T ss_pred EEEEEECCHHHHHH----HHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHHH
Confidence 34444444444333 233333334478999999999999999999976 36789999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEee
Q 037717 311 FEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLY 389 (582)
Q Consensus 311 ~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~ 389 (582)
++.|++|.++||||||++++|+|||++++|||+|+ |.|..+|.||+|||||.| +|.||.+|
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999997665 346678999999999998 69999999
Q ss_pred Chhhhh--------------hhhh--hhhHhhhh--HHHHHHHHhcCCccccc-----cCCCCchHHHHHHHHHHHHHcC
Q 037717 390 TLHNYH--------------RIWM--TILCQKYN--ELIWKMLSLFSNVLVNF-----DFIDPPLEEALLKAFELLYALG 446 (582)
Q Consensus 390 ~~~~~~--------------~~~~--~pei~r~~--~~~L~l~~l~~~~~~~f-----~~~~~p~~~~i~~al~~L~~lg 446 (582)
+..+.. .+.. .|||.+.+ .+++.++.++.+++..| +++++|+.+.+..|+..|....
T Consensus 133 ~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~ 212 (300)
T 3i32_A 133 GPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGA 212 (300)
T ss_dssp CSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCC
Confidence 987632 1111 38888887 77888887766666555 5678899999999999997665
Q ss_pred C
Q 037717 447 A 447 (582)
Q Consensus 447 a 447 (582)
.
T Consensus 213 ~ 213 (300)
T 3i32_A 213 P 213 (300)
T ss_dssp C
T ss_pred c
Confidence 4
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.89 E-value=3e-23 Score=242.47 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC--cEEEEeC
Q 037717 248 VTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA--RKVVLAT 325 (582)
Q Consensus 248 ~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~--~kVivaT 325 (582)
..+..+....+++++||||+++..++.+++.|.+. .++.+..+||++++++|+++++.|++|. .+|+|||
T Consensus 492 ~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 492 EWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp HHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred HHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 33444444466789999999999999999999852 2677999999999999999999999998 9999999
Q ss_pred CCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-C--eEEEeeChhhh
Q 037717 326 NIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-G--KCFRLYTLHNY 394 (582)
Q Consensus 326 ~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G--~~~~L~~~~~~ 394 (582)
+++++|+|+|++++|| .|| .|.+.+.|.||+||+||.|. | ..|+++.+...
T Consensus 564 ~v~~~GlDl~~~~~VI--------~~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMV--------MFD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp CCTTCSSCCTTCCEEE--------CSS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred chhhcCCCcccCcEEE--------Eec----------CCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 9999999999999999 444 34677889999999999986 4 46666665543
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=4.6e-21 Score=222.99 Aligned_cols=293 Identities=12% Similarity=0.044 Sum_probs=184.9
Q ss_pred CCChHHHHHHHHHHhC--------------CCeEEEECCCCCchhchH-h--hhhcc-----------chHHHHHHHHHH
Q 037717 64 LPIYPFWEELLQAVSG--------------YPVLAIVGETGSGKTTQI-P--QYLYE-----------PRWVAAMSVAAR 115 (582)
Q Consensus 64 lPi~~~~~~il~~i~~--------------~~~viv~a~TGSGKTt~i-p--~~ll~-----------P~r~~a~~~a~~ 115 (582)
....++|.+++..+.+ ++..+++++||||||..+ + ..+.. ||+.++.|+...
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 3467788888877654 357899999999999443 2 12221 999999998776
Q ss_pred HHHHhCCccCcEEeEEEe-eccc-CCCCccEEEEChHHHHHHHHcCC---CCCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 116 VSQEMGVKLGHEVGYSIR-FEDC-TSDKTVLKYMTDCMLLREIVIEP---SLESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 116 va~~~~~~~g~~vgy~v~-~~~~-~~~~t~I~~~T~g~Ll~~l~~~~---~l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
+..-....+.. +.... .... ...+.+|+|+|++.|...+.... .+..+.+||+|||| |+...+. .+.+
T Consensus 350 f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNL 422 (1038)
T ss_dssp HHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHH
T ss_pred HHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHH
Confidence 65422211110 00000 0001 13467999999999998775432 36678999999999 6654332 3444
Q ss_pred HhhCCCceEEEecccCCh-------HHHHhhhCCCCEEee-------CCceeceeEEEecCCc-----------h-----
Q 037717 191 INYRPDLKLLISSATLDA-------EKFSDYFGSAPIFKI-------PGRRYPVELFYTKAPE-----------V----- 240 (582)
Q Consensus 191 ~~~~~~~kii~~SAT~~~-------~~~~~~f~~~~v~~i-------~gr~~~v~~~~~~~~~-----------~----- 240 (582)
....|+.++++||||+.. ....++||. ++... .|-..|+.+.|..... .
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i 501 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENALGSETTASVFGR-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAA 501 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHT
T ss_pred HHhCCcccEEEEeCCccccccchhhhHHHHHhCC-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHH
Confidence 455678899999999921 356678874 33322 2444556555542110 0
Q ss_pred ---------hHHHHHHHHHHHHHhc--------CCCCCEEEEcCCHHHHHHHHHHHHHhhhcc---CCCCCCeEE-EEec
Q 037717 241 ---------DYIEAAIVTALQIHVN--------EPTGDILVFLTGQDEIERAEEILKQRTRGL---GTKIAELII-CPIY 299 (582)
Q Consensus 241 ---------~~~~~~~~~~~~i~~~--------~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~---~~~~~~~~v-~~lh 299 (582)
..+...+..++.-+.. ..++++||||+++..+..+++.|.+..... .+...++.+ ..+|
T Consensus 502 ~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s 581 (1038)
T 2w00_A 502 ENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFS 581 (1038)
T ss_dssp CSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEe
Confidence 0011111222221111 124679999999999999999998764221 011122444 3445
Q ss_pred CC----------C----------CHH-----------------------------HHHHhcCCCCCCCcEEEEeCCCCcc
Q 037717 300 AN----------L----------PTE-----------------------------LQAKIFEPTPERARKVVLATNIAET 330 (582)
Q Consensus 300 ~~----------l----------~~~-----------------------------~r~~v~~~~~~g~~kVivaT~iae~ 330 (582)
++ + ++. +|+.+.+.|++|..+|||+|+++.+
T Consensus 582 ~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~llt 661 (1038)
T 2w00_A 582 FAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLT 661 (1038)
T ss_dssp CCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSS
T ss_pred CCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHh
Confidence 42 2 221 3777888999999999999999999
Q ss_pred ccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCC
Q 037717 331 SLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPG 383 (582)
Q Consensus 331 gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G 383 (582)
|+|+|.+.++. +| .|.+...++||+||+||.++|
T Consensus 662 GfDiP~l~tly---------lD----------kpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 662 GFDAPTLNTLF---------VD----------KNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp SCCCTTEEEEE---------EE----------SCCCHHHHHHHHHTTCCCCCT
T ss_pred CcCcccccEEE---------Ec----------cCCCccceeehhhccCcCCCC
Confidence 99999995443 22 456677899999999999864
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.85 E-value=1.8e-21 Score=212.53 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=90.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC-CcE-EEEeCCCCccccccC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-ARK-VVLATNIAETSLTID 335 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~k-VivaT~iae~gidIp 335 (582)
++.++|||+.....++.+++.|.... +..+..+||++++++|+++++.|++| ..+ +|+||+++++|+|+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 46799999999999999999987632 45577899999999999999999887 444 799999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChhhhhh
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLHNYHR 396 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~~~~~ 396 (582)
++++|| .||+ |.+.+.+.||+||++|.|. ..+|+|+++...+.
T Consensus 412 ~~~~vi--------~~d~----------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 412 SANRVI--------HFDR----------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp TCSEEE--------ESSC----------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred hCCEEE--------EeCC----------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 999999 4443 4556679999999999985 44688888776553
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=5.6e-20 Score=201.13 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=119.7
Q ss_pred ceEEEecccC--ChHHHHhhhCCCCEEeeCCceec--ee---EEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Q 037717 197 LKLLISSATL--DAEKFSDYFGSAPIFKIPGRRYP--VE---LFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQ 269 (582)
Q Consensus 197 ~kii~~SAT~--~~~~~~~~f~~~~v~~i~gr~~~--v~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 269 (582)
-|+.+||+|+ ..+.|.+.++ ..++.||...-. .+ ..|. ...+...+.+..+...+. .+.++|||++|+
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~ 484 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYK--KGQPVLVGTTSI 484 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEEEESSH
T ss_pred hHHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEe--cHHHHHHHHHHHHHHHhh--CCCCEEEEECCH
Confidence 3899999999 5677777775 567777754211 11 1222 223333333333333332 256899999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccC--------CeeEEE
Q 037717 270 DEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTID--------GIKYVI 341 (582)
Q Consensus 270 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp--------~v~~VI 341 (582)
+.++.+++.|.+ .++....+||+..+.++..+.+.+++| .|+||||+|++|+||+ +..+||
T Consensus 485 e~sE~Ls~~L~~---------~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI 553 (822)
T 3jux_A 485 EKSELLSSMLKK---------KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII 553 (822)
T ss_dssp HHHHHHHHHHHT---------TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE
T ss_pred HHHHHHHHHHHH---------CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE
Confidence 999999999987 467788999997666666666666666 5999999999999998 777999
Q ss_pred eCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEEeeChhh
Q 037717 342 HPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFRLYTLHN 393 (582)
Q Consensus 342 D~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~L~~~~~ 393 (582)
++. .|-|...|.||+||+||.|. |.+..+.+.++
T Consensus 554 nte------------------~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 554 GTE------------------RHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp ESS------------------CCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred ecC------------------CCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 443 46778889999999999995 99988887654
No 61
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=168.19 Aligned_cols=143 Identities=14% Similarity=0.210 Sum_probs=110.3
Q ss_pred ceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHH
Q 037717 229 PVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQA 308 (582)
Q Consensus 229 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 308 (582)
.++.+|...+..+ .....+..+....+.+++||||++++.++.+++.|.. .++.+..+||++++++|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ---------DGHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHH
Confidence 3556666555433 1233444555555678999999999999999999987 367799999999999999
Q ss_pred HhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEE
Q 037717 309 KIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFR 387 (582)
Q Consensus 309 ~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~ 387 (582)
.+++.|++|..+|+|||+++++|+|+|++++||+.+.+... ....+..+|.||+|||||.| +|.|+.
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~------------~~~~~~~~~~qr~GR~gR~g~~g~~~~ 142 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ------------GEEPDYETYLHRIGRTGRFGKKGLAFN 142 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----CCEEEEE
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc------------cccCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999965542110 11278889999999999997 499999
Q ss_pred eeChhhhh
Q 037717 388 LYTLHNYH 395 (582)
Q Consensus 388 L~~~~~~~ 395 (582)
+++..+..
T Consensus 143 ~~~~~~~~ 150 (175)
T 2rb4_A 143 MIEVDELP 150 (175)
T ss_dssp EECGGGHH
T ss_pred EEccchHH
Confidence 99987643
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=3e-19 Score=165.23 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=110.4
Q ss_pred eeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHH
Q 037717 230 VELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAK 309 (582)
Q Consensus 230 v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 309 (582)
++.+|...+..+.... +..+....+++++|||+++++.++.+++.|.+ .++.+..+||++++++|..
T Consensus 10 i~~~~~~~~~~~K~~~----L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSL----LKDVLMTENPDSCIIFCRTKEHVNQLTDELDD---------LGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHH----HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHH
Confidence 5555555544443322 23333334567999999999999999999987 3677999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEe
Q 037717 310 IFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRL 388 (582)
Q Consensus 310 v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L 388 (582)
+++.|++|..+|||||+++++|+|+|++++||+.+ .|.|..+|.||+||+||.| +|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~------------------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYD------------------LPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESS------------------CCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeC------------------CCCCHHHHHHhccccCcCCCCceEEEE
Confidence 99999999999999999999999999999999443 3567889999999999998 5999999
Q ss_pred eChhhhh
Q 037717 389 YTLHNYH 395 (582)
Q Consensus 389 ~~~~~~~ 395 (582)
++..+..
T Consensus 139 ~~~~~~~ 145 (163)
T 2hjv_A 139 VTAFEKR 145 (163)
T ss_dssp ECGGGHH
T ss_pred ecHHHHH
Confidence 9977543
No 63
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=1.6e-19 Score=167.38 Aligned_cols=117 Identities=16% Similarity=0.348 Sum_probs=99.2
Q ss_pred HHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccc
Q 037717 252 QIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETS 331 (582)
Q Consensus 252 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~g 331 (582)
.+....+++++|||+++++.++.+++.|.. .++.+..+||++++++|.++++.|++|..+|||||+++++|
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRN---------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 333344578999999999999999999987 36779999999999999999999999999999999999999
Q ss_pred cccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 332 LTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 332 idIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
+|+|++++||+.+. |.|..+|.||+||+||.| +|.|+.++++.+..
T Consensus 94 ~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 94 IDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp CCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 99999999995443 456778999999999997 59999999977654
No 64
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.79 E-value=4.1e-19 Score=199.47 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=101.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCe
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGI 337 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v 337 (582)
.++++|||++|++.++.+++.|.+ .++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~---------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKE---------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHh---------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 457999999999999999999988 35678889999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhh
Q 037717 338 KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNY 394 (582)
Q Consensus 338 ~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~ 394 (582)
++||+++.. ....|.|..+|.||+|||||.++|.|+.++++.+.
T Consensus 515 ~lVi~~d~d-------------~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 515 SLVAILDAD-------------KEGFLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp EEEEETTTT-------------CCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred CEEEEeCcc-------------cccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999955431 11236788999999999999999999999987643
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=4.6e-18 Score=190.94 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCc---EEEEeCCCCcccccc
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERAR---KVVLATNIAETSLTI 334 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~---kVivaT~iae~gidI 334 (582)
++.++|||+.....++.+.+.|.. .++.+..+||+++.++|+++++.|.+|.. .+|+||.+++.|+|+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~---------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRN---------RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHH---------HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHH---------CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 467899999999999999998876 36778899999999999999999988754 589999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChhhhhh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLHNYHR 396 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~~~~~ 396 (582)
+++++|| .|| .|-+.+.+.||+||++|.|. ..+|+++++...+.
T Consensus 486 ~~a~~Vi--------~~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 486 IGANRLV--------MFD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp TTEEEEE--------ECS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred ccCCEEE--------EEC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 9999999 444 45678889999999999985 46888998876654
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=4.7e-19 Score=165.51 Aligned_cols=134 Identities=13% Similarity=0.236 Sum_probs=110.1
Q ss_pred ceeEEEecCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHH
Q 037717 229 PVELFYTKAPEVDYIEAAIVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQA 308 (582)
Q Consensus 229 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 308 (582)
.+..+|...+..+... .+..+....+.+++||||++++.++.+++.|.. .++.+..+||++++++|+
T Consensus 5 ~i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE---------QNFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHh---------cCCCEEEEECCCCHHHHH
Confidence 3455565555443332 334444445678999999999999999999987 367789999999999999
Q ss_pred HhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC-CeEEE
Q 037717 309 KIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP-GKCFR 387 (582)
Q Consensus 309 ~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-G~~~~ 387 (582)
.+++.|++|..+|+|||+++++|+|+|++++||+.+ .|.|..+|.||+||+||.|. |.|+.
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d------------------~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD------------------MPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESS------------------CCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEEC------------------CCCCHHHHHHHhcccccCCCCcEEEE
Confidence 999999999999999999999999999999999433 35678899999999999985 99999
Q ss_pred eeChhh
Q 037717 388 LYTLHN 393 (582)
Q Consensus 388 L~~~~~ 393 (582)
+++..+
T Consensus 134 ~~~~~~ 139 (172)
T 1t5i_A 134 FVSDEN 139 (172)
T ss_dssp EECSHH
T ss_pred EEcChh
Confidence 998653
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=4.8e-19 Score=199.00 Aligned_cols=115 Identities=13% Similarity=0.017 Sum_probs=101.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCe
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGI 337 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v 337 (582)
.++++|||++|++.++.+++.|.+ .++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~---------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVE---------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh---------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 357999999999999999999987 35678889999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCCCeEEEeeChhhh
Q 037717 338 KYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGPGKCFRLYTLHNY 394 (582)
Q Consensus 338 ~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~L~~~~~~ 394 (582)
++||+++.. +...|.|..+|.||+|||||.++|.|+.+++....
T Consensus 509 ~lVI~~d~d-------------~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 509 SLVAILDAD-------------KEGFLRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp EEEEETTTT-------------SCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred CEEEEeCCc-------------ccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 999955431 12337788999999999999999999999987543
No 68
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.77 E-value=8.8e-19 Score=165.64 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=96.3
Q ss_pred ceeEEEecCCchhHHHHHHHHHHHHHhcC-CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHH
Q 037717 229 PVELFYTKAPEVDYIEAAIVTALQIHVNE-PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQ 307 (582)
Q Consensus 229 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 307 (582)
.++.+|...+..+.... +..+.... +++++|||+++++.++.+++.|.. .++.+..+||++++++|
T Consensus 19 ~i~q~~~~v~~~~K~~~----L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 19 NITQKVVWVEESDKRSF----LLDLLNATGKDSLTLVFVETKKGADSLEDFLYH---------EGYACTSIHGDRSQRDR 85 (185)
T ss_dssp TEEEEEEECCGGGHHHH----HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHH---------TTCCEEEEC--------
T ss_pred CceEEEEEeCcHHHHHH----HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH---------cCCceEEEeCCCCHHHH
Confidence 34555555444433332 22322222 568899999999999999999987 36789999999999999
Q ss_pred HHhcCCCCCCCcEEEEeCCCCccccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEE
Q 037717 308 AKIFEPTPERARKVVLATNIAETSLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCF 386 (582)
Q Consensus 308 ~~v~~~~~~g~~kVivaT~iae~gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~ 386 (582)
+.+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|.||+||+||.| +|.|+
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~ 147 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLAT 147 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEE
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEE
Confidence 99999999999999999999999999999999994 33 3567889999999999998 59999
Q ss_pred EeeChhhhh
Q 037717 387 RLYTLHNYH 395 (582)
Q Consensus 387 ~L~~~~~~~ 395 (582)
.++++.+..
T Consensus 148 ~~~~~~~~~ 156 (185)
T 2jgn_A 148 SFFNERNIN 156 (185)
T ss_dssp EEECGGGGG
T ss_pred EEEchhhHH
Confidence 999987654
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-18 Score=197.54 Aligned_cols=112 Identities=11% Similarity=0.128 Sum_probs=96.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCC---cEEEEeCCCCcccccc
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERA---RKVVLATNIAETSLTI 334 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~---~kVivaT~iae~gidI 334 (582)
.+.++|||+.....++.+.+.|.. .++.+..+||+++.++|+++++.|..+. ..+|+||.+++.|||+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~---------~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSI---------KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHH---------HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 457899999999999999999976 3667889999999999999999998754 3599999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChhhhhh
Q 037717 335 DGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLHNYHR 396 (582)
Q Consensus 335 p~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~~~~~ 396 (582)
+++++|| .||+ |-+.+.+.||.||++|.|. ..+|+|+++...+.
T Consensus 642 ~~a~~VI--------~~D~----------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 642 MTADTVV--------IFDS----------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp TTCCEEE--------ESSC----------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred cccceEE--------EecC----------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 9999999 4554 4566789999999999884 67899999887764
No 70
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=163.38 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=95.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccccCCee
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLTIDGIK 338 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gidIp~v~ 338 (582)
++++||||++++.++.+++.|.. .++.+..+||++++++|+++++.|++|..+|+|||+++++|+|+|+++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~ 124 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL---------KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQ 124 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH---------HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCC
Confidence 56899999999999999999987 367789999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChh
Q 037717 339 YVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLH 392 (582)
Q Consensus 339 ~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~ 392 (582)
+||+ || .|.+..+|.||+||+||.| +|.|+.+++..
T Consensus 125 ~VI~--------~d----------~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 125 HVIN--------YD----------MPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EEEE--------SS----------CCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EEEE--------eC----------CCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9994 33 3567889999999999998 49999999875
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=165.07 Aligned_cols=170 Identities=20% Similarity=0.132 Sum_probs=117.3
Q ss_pred ccchHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHH
Q 037717 50 VKSTLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAA 114 (582)
Q Consensus 50 ~~~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~ 114 (582)
......+..+...-...+++|.+++..+.++++++++||||||||+....++++ |+|.++.++++
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~ 129 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE 129 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHH
Confidence 345555566666666889999999999999999999999999999765444332 99999999988
Q ss_pred HHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecccCCCcchhHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
++..... ..|..++....... ....+++|+|+||++|++.+.... .+.++++||+|||| +..+.++...+
T Consensus 130 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l 207 (249)
T 3ber_A 130 QFEALGS-SIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEV 207 (249)
T ss_dssp HHHHHHG-GGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHH
T ss_pred HHHHHhc-cCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHH
Confidence 7765432 22333333222111 112467999999999999887643 38899999999999 44443433333
Q ss_pred HHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCEE
Q 037717 187 LKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPIF 221 (582)
Q Consensus 187 lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~ 221 (582)
.+.+...+++.++++||||+ +...+.+.+-..|+.
T Consensus 208 ~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 208 DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp HHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred HHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 23222344588999999999 455666655455543
No 72
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=159.78 Aligned_cols=161 Identities=22% Similarity=0.197 Sum_probs=108.1
Q ss_pred HHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhh--c---------c--------chHHHHHHHHHHH
Q 037717 58 QEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYL--Y---------E--------PRWVAAMSVAARV 116 (582)
Q Consensus 58 ~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~l--l---------~--------P~r~~a~~~a~~v 116 (582)
.....-...+++|.+++..+.++++++++||||||||. ++|.+. . . |+|.+|.|++.++
T Consensus 35 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 114 (228)
T 3iuy_A 35 IIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAEC 114 (228)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHH
Confidence 33344446788999999999999999999999999994 455331 1 1 9999999999888
Q ss_pred HHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 117 SQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
...... +..++....... ....+.+|+|+||++|.+.+..... +.++++||+|||| +..+.++...+.+.
T Consensus 115 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i 191 (228)
T 3iuy_A 115 SKYSYK--GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQIRKI 191 (228)
T ss_dssp HHHCCT--TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHHHHHH
T ss_pred HHhccc--CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHHHHHH
Confidence 775322 222222111111 1124579999999999998877665 8999999999999 32222222222222
Q ss_pred HHhhCCCceEEEecccC--ChHHHHhhhCCCCEE
Q 037717 190 LINYRPDLKLLISSATL--DAEKFSDYFGSAPIF 221 (582)
Q Consensus 190 ~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~ 221 (582)
+...+++.++++||||+ +...+.+.+-..|++
T Consensus 192 ~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 192 LLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp HHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred HHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 23355789999999999 445566555445543
No 73
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.57 E-value=2.6e-19 Score=166.90 Aligned_cols=118 Identities=18% Similarity=0.291 Sum_probs=101.9
Q ss_pred HHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCcc
Q 037717 251 LQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAET 330 (582)
Q Consensus 251 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~ 330 (582)
..+....+++++||||++++.++.+++.|.. .++.+..+||++++++|..+++.|++|..+|||||+++++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLRE---------AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 3333344568899999999999999999976 3677889999999999999999999999999999999999
Q ss_pred ccccCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCC-CCeEEEeeChhhhh
Q 037717 331 SLTIDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTG-PGKCFRLYTLHNYH 395 (582)
Q Consensus 331 gidIp~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-~G~~~~L~~~~~~~ 395 (582)
|+|+|++++||+.+ .|.|..+|.||+||+||.| +|.|+.+++..+..
T Consensus 93 Gid~~~~~~Vi~~~------------------~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 93 GIDIPDVSHVFNFD------------------MPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 99999999999443 3567778999999999998 59999999876543
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=7.5e-17 Score=154.43 Aligned_cols=166 Identities=22% Similarity=0.174 Sum_probs=110.1
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhhhc--c-----------chHHHHHHHHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQYLY--E-----------PRWVAAMSVAARVS 117 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~ll--~-----------P~r~~a~~~a~~va 117 (582)
...+......--..+++|.+++..+.+++++++++|||||||.. +|.+-. . |++.++.++++.+.
T Consensus 13 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 92 (206)
T 1vec_A 13 ELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICI 92 (206)
T ss_dssp HHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHH
Confidence 33334444444567899999999999999999999999999953 333211 0 99999999988877
Q ss_pred HHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 118 QEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 118 ~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
.......+..++....... ....+.+|+|+||+.|.+.+..... +.++++||+||||. ..+.++ ...++.+
T Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~-~~~l~~i 170 (206)
T 1vec_A 93 QVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDF-VQIMEDI 170 (206)
T ss_dssp HHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTT-HHHHHHH
T ss_pred HHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCc-HHHHHHH
Confidence 6543222333433222111 1234678999999999998876654 88999999999993 222222 2233333
Q ss_pred Hh-hCCCceEEEecccC--ChHHHHhhhCCCCE
Q 037717 191 IN-YRPDLKLLISSATL--DAEKFSDYFGSAPI 220 (582)
Q Consensus 191 ~~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v 220 (582)
.. ..++.++++||||+ +...+.+.+-..|+
T Consensus 171 ~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 171 ILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp HHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred HHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 33 33488999999999 44455554434443
No 75
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.72 E-value=5.3e-17 Score=157.69 Aligned_cols=173 Identities=13% Similarity=0.044 Sum_probs=108.8
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARV 116 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~v 116 (582)
....+......--..+++|.+++..+.+++++++++|||||||......++. |++.++.+++..+
T Consensus 23 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 102 (224)
T 1qde_A 23 ENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVV 102 (224)
T ss_dssp HHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHH
Confidence 3344444444555689999999999999999999999999999653322221 9999999998877
Q ss_pred HHHhCCccCcEEeEEEeec-----ccCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 117 SQEMGVKLGHEVGYSIRFE-----DCTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~-----~~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
..... ..+..++...... .....+++|+++||+.|.+.+..... +.++++||+|||| +..+.++...+.+..
T Consensus 103 ~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~l~~i~ 180 (224)
T 1qde_A 103 MALAF-HMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIF 180 (224)
T ss_dssp HHHTT-TSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHH
T ss_pred HHHhc-ccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHHHHHHH
Confidence 65432 2233332211111 11123489999999999998876554 8899999999999 222222221122222
Q ss_pred HhhCCCceEEEecccCC--hHHHHh-hhCCCCEEeeCCc
Q 037717 191 INYRPDLKLLISSATLD--AEKFSD-YFGSAPIFKIPGR 226 (582)
Q Consensus 191 ~~~~~~~kii~~SAT~~--~~~~~~-~f~~~~v~~i~gr 226 (582)
....++.++++||||++ ...+.+ |+++...+.+++.
T Consensus 181 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 181 TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 22456889999999993 445554 5543333444433
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.71 E-value=5.3e-17 Score=157.33 Aligned_cols=168 Identities=17% Similarity=0.101 Sum_probs=110.4
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhhh--cc-----------chHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQYL--YE-----------PRWVAAMSVAARV 116 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~l--l~-----------P~r~~a~~~a~~v 116 (582)
....+..+...-...+++|.+++..+.+++++++++|||||||.. +|.+- .. |+|.++.++++.+
T Consensus 13 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 92 (219)
T 1q0u_A 13 PFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHET 92 (219)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHH
Confidence 344444455555667999999999999999999999999999964 33321 11 9999999998887
Q ss_pred HHHhCCc---cCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHH
Q 037717 117 SQEMGVK---LGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 117 a~~~~~~---~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
.+..... .+..++......+ ....+.+|+|+||++|.+.+..... +.++++||+||||. ..+..+ ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~ 170 (219)
T 1q0u_A 93 LKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGF-ITD 170 (219)
T ss_dssp HHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-HHHTTC-HHH
T ss_pred HHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-HhhhCh-HHH
Confidence 6654321 0222322221111 1223678999999999998876554 78999999999992 222122 122
Q ss_pred HHHHHh-hCCCceEEEecccC--ChHHHHhhhCCCCEE
Q 037717 187 LKDLIN-YRPDLKLLISSATL--DAEKFSDYFGSAPIF 221 (582)
Q Consensus 187 lk~~~~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v~ 221 (582)
+..++. ..++.++++||||+ +...+.+.+-..|+.
T Consensus 171 l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 171 VDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTF 208 (219)
T ss_dssp HHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEE
T ss_pred HHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeE
Confidence 233333 34578999999999 445555544445543
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.71 E-value=8.3e-17 Score=158.07 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=107.4
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARV 116 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~v 116 (582)
....+......--..+++|.+++..+.++++++++||||||||......++. |+|.++.++++.+
T Consensus 39 ~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 118 (237)
T 3bor_A 39 ESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVI 118 (237)
T ss_dssp HHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHH
Confidence 3333333333434478999999999999999999999999999554333221 9999999998877
Q ss_pred HHHhCCccCcEEeEEEeecc-------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccC---CCcchhHHHH
Q 037717 117 SQEMGVKLGHEVGYSIRFED-------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQE---RTLSTDNLFG 185 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~~-------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~He---R~~~~d~ll~ 185 (582)
.... ...+..++....... ......+|+|+||+.|.+.+..... +.++++||+||||. .+. .+.+..
T Consensus 119 ~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~-~~~l~~ 196 (237)
T 3bor_A 119 LALG-DYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGF-KDQIYE 196 (237)
T ss_dssp HHHT-TTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTC-HHHHHH
T ss_pred HHHh-hhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCc-HHHHHH
Confidence 6543 222333322211111 1122379999999999998876544 88899999999992 221 122222
Q ss_pred HHHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCEE
Q 037717 186 LLKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPIF 221 (582)
Q Consensus 186 ~lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v~ 221 (582)
+++ ...++.+++++|||+ +...+.+.|-..|+.
T Consensus 197 i~~---~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 197 IFQ---KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp HHH---HSCTTCEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred HHH---hCCCCCeEEEEEEecCHHHHHHHHHHCCCCEE
Confidence 222 245688999999999 455565554445543
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.70 E-value=1.3e-16 Score=152.66 Aligned_cols=164 Identities=22% Similarity=0.159 Sum_probs=109.7
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhh--hc------c--------chHHHHHHHHH
Q 037717 53 TLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQY--LY------E--------PRWVAAMSVAA 114 (582)
Q Consensus 53 ~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~--ll------~--------P~r~~a~~~a~ 114 (582)
...+..+...-...+++|.+++..+.+++++++++|||||||.. +|.+ +. . |++.++.++++
T Consensus 11 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~ 90 (207)
T 2gxq_A 11 EILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVAS 90 (207)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHH
Confidence 33444444555578999999999999999999999999999954 3322 21 1 99999999999
Q ss_pred HHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLL 187 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~l 187 (582)
++...... + .++....... ....+.+|+++||+.+.+.+..... +.++++||+||||. ..+..+ ...+
T Consensus 91 ~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~-~~~~ 165 (207)
T 2gxq_A 91 ELTAVAPH-L--KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGF-EEEV 165 (207)
T ss_dssp HHHHHCTT-S--CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTC-HHHH
T ss_pred HHHHHhhc-c--eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccch-HHHH
Confidence 88776432 1 1221111111 0113578999999999998876544 89999999999992 211111 1122
Q ss_pred HHHHh-hCCCceEEEecccCC--hHHHHhhhCCCCEE
Q 037717 188 KDLIN-YRPDLKLLISSATLD--AEKFSDYFGSAPIF 221 (582)
Q Consensus 188 k~~~~-~~~~~kii~~SAT~~--~~~~~~~f~~~~v~ 221 (582)
..++. ..++.++++||||++ .+.+.+.|...|++
T Consensus 166 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~ 202 (207)
T 2gxq_A 166 EALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVL 202 (207)
T ss_dssp HHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred HHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeE
Confidence 22222 345789999999994 56676655555543
No 79
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=162.60 Aligned_cols=168 Identities=16% Similarity=0.090 Sum_probs=112.3
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCC--CeEEEECCCCCchhch--Hhhh--hcc-----------chHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGY--PVLAIVGETGSGKTTQ--IPQY--LYE-----------PRWVAAMSVAA 114 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~--~~viv~a~TGSGKTt~--ip~~--ll~-----------P~r~~a~~~a~ 114 (582)
....+......--..+++|.+++..+..+ ++++++||||||||.. +|.+ +.. |+|.+|.|++.
T Consensus 101 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~ 180 (300)
T 3fmo_B 101 PQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK 180 (300)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHH
Confidence 33344444445556778899999999887 8999999999999954 3432 111 99999999988
Q ss_pred HHHHHhCCccCcEEeEEEeecc---cCCCCccEEEEChHHHHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFED---CTSDKTVLKYMTDCMLLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKD 189 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~---~~~~~t~I~~~T~g~Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~ 189 (582)
.+........+..+++.++... ......+|+|+|||+|++.+..... +.++++||||||| +..+.......+..
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~ 259 (300)
T 3fmo_B 181 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIR 259 (300)
T ss_dssp HHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHH
T ss_pred HHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHH
Confidence 7765543322344444433222 2234568999999999999976333 8899999999999 32221112222233
Q ss_pred HHh-hCCCceEEEecccC--ChHHHHhhhCCCCE
Q 037717 190 LIN-YRPDLKLLISSATL--DAEKFSDYFGSAPI 220 (582)
Q Consensus 190 ~~~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v 220 (582)
+.+ .+++.|++++|||+ +...+++.|-..|+
T Consensus 260 i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~ 293 (300)
T 3fmo_B 260 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 293 (300)
T ss_dssp HHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE
T ss_pred HHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCe
Confidence 333 34678999999999 56677776655554
No 80
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=154.56 Aligned_cols=166 Identities=17% Similarity=0.098 Sum_probs=111.3
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----------c--------chHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----------E--------PRWVAAMSV 112 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----------~--------P~r~~a~~~ 112 (582)
....+..+.+.-...+++|.+++..+.+++++++++|||||||+.....++ . |+|.++.++
T Consensus 34 ~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~ 113 (236)
T 2pl3_A 34 KKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQT 113 (236)
T ss_dssp HHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHH
Confidence 444455555666678999999999999999999999999999964332211 1 999999999
Q ss_pred HHHHHHHhCCccCcEEeEEEeecc-----cCCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecccCCCcchhHHHH
Q 037717 113 AARVSQEMGVKLGHEVGYSIRFED-----CTSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQERTLSTDNLFG 185 (582)
Q Consensus 113 a~~va~~~~~~~g~~vgy~v~~~~-----~~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~HeR~~~~d~ll~ 185 (582)
+..+... +...+..++....... ....+.+|+|+||++|++.+.... .+.++++||+|||| +..+.++.-
T Consensus 114 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~- 190 (236)
T 2pl3_A 114 FEVLRKV-GKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFAD- 190 (236)
T ss_dssp HHHHHHH-TTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHH-
T ss_pred HHHHHHH-hCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHH-
Confidence 8877654 3333333433222111 112467999999999999887653 37899999999999 333322222
Q ss_pred HHHHHHh-hCCCceEEEecccC--ChHHHHhhhCCCCE
Q 037717 186 LLKDLIN-YRPDLKLLISSATL--DAEKFSDYFGSAPI 220 (582)
Q Consensus 186 ~lk~~~~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v 220 (582)
.+..++. ..++.++++||||+ +...+++.+-..|+
T Consensus 191 ~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~ 228 (236)
T 2pl3_A 191 TMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPE 228 (236)
T ss_dssp HHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCE
T ss_pred HHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCE
Confidence 2222222 34578999999999 45666665544443
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.69 E-value=1.5e-16 Score=155.38 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=102.7
Q ss_pred chHHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhh--hcc-----------chHHHHHHHHHHH
Q 037717 52 STLEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQY--LYE-----------PRWVAAMSVAARV 116 (582)
Q Consensus 52 ~~~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~--ll~-----------P~r~~a~~~a~~v 116 (582)
....+......--..+++|.+++..+.+++++++++|||||||.. +|.+ +.. |+|.++.++++++
T Consensus 33 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 112 (230)
T 2oxc_A 33 RPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVI 112 (230)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHH
Confidence 334444444333447899999999999999999999999999954 3332 111 9999999999888
Q ss_pred HHHhCCccCcEEeEEEeecc-----cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 117 SQEMGVKLGHEVGYSIRFED-----CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 117 a~~~~~~~g~~vgy~v~~~~-----~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
........+..++....... ....+.+|+|+||+.|.+.+..+.. +.++++||+||||. ..+.......++.+
T Consensus 113 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~i 191 (230)
T 2oxc_A 113 TAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LLEEGSFQEQINWI 191 (230)
T ss_dssp HHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HHSTTSSHHHHHHH
T ss_pred HHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hhcCcchHHHHHHH
Confidence 76543222333433221111 1124679999999999998876554 78899999999992 21111011222333
Q ss_pred Hh-hCCCceEEEecccCCh
Q 037717 191 IN-YRPDLKLLISSATLDA 208 (582)
Q Consensus 191 ~~-~~~~~kii~~SAT~~~ 208 (582)
++ ..++.+++++|||++.
T Consensus 192 ~~~~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 192 YSSLPASKQMLAVSATYPE 210 (230)
T ss_dssp HHHSCSSCEEEEEESCCCH
T ss_pred HHhCCCCCeEEEEEeccCH
Confidence 33 3347899999999943
No 82
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=153.87 Aligned_cols=166 Identities=20% Similarity=0.126 Sum_probs=109.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhch--Hhhh--hc----c--------chHHHHHHHHHHHHH
Q 037717 55 EMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQ--IPQY--LY----E--------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 55 ~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~--ip~~--ll----~--------P~r~~a~~~a~~va~ 118 (582)
.+......-...+++|.+++..+.++++++++||||||||.. +|.+ +. . |+|.++.+++..+..
T Consensus 41 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 41 LQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 333333444558999999999999999999999999999954 4432 11 1 999999999887766
Q ss_pred HhCCccCcEEeEEE-------eecccCCCCccEEEEChHHHHHHHHcCC---CCCCCCceEeecccCCCcc--hhHHHHH
Q 037717 119 EMGVKLGHEVGYSI-------RFEDCTSDKTVLKYMTDCMLLREIVIEP---SLESYSVLIVDEAQERTLS--TDNLFGL 186 (582)
Q Consensus 119 ~~~~~~g~~vgy~v-------~~~~~~~~~t~I~~~T~g~Ll~~l~~~~---~l~~~~~vViDE~HeR~~~--~d~ll~~ 186 (582)
... ..|..++... .+......+.+|+|+||++|.+.+...+ .+.++++||+||||...-. ..+...+
T Consensus 121 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 199 (245)
T 3dkp_A 121 ISE-GTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQL 199 (245)
T ss_dssp HTT-TSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHH
T ss_pred Hhc-ccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHH
Confidence 532 2333332211 1112234567999999999999987763 3889999999999932110 1222222
Q ss_pred HHHHHh-hCCCceEEEecccC--ChHHHHhhhCCCCEE
Q 037717 187 LKDLIN-YRPDLKLLISSATL--DAEKFSDYFGSAPIF 221 (582)
Q Consensus 187 lk~~~~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v~ 221 (582)
.+.+.. ..++.++++||||+ +.+.+.+.+...|+.
T Consensus 200 ~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 200 ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp HHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred HHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 222112 23578999999999 556666655455543
No 83
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.68 E-value=1.5e-16 Score=156.66 Aligned_cols=165 Identities=18% Similarity=0.089 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhhhc------------------cchHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQYLY------------------EPRWVAAMSVA 113 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~ll------------------~P~r~~a~~~a 113 (582)
..+......--..+++|.+++..+.++++++++||||||||. ++|.+.. -|+|.++.|+.
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 119 (242)
T 3fe2_A 40 VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 119 (242)
T ss_dssp HHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHH
Confidence 333333333344789999999999999999999999999994 4443311 19999999997
Q ss_pred HHHHHHhCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHH
Q 037717 114 ARVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 114 ~~va~~~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
..+..... ..|..++....... ....+.+|+|+||++|++.+..... +.++++||||||| +..+..+.-.+
T Consensus 120 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~~ 197 (242)
T 3fe2_A 120 QVAAEYCR-ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQI 197 (242)
T ss_dssp HHHHHHHH-HTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHHH
T ss_pred HHHHHHHh-hcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHHH
Confidence 76654321 12222322211111 1123578999999999999877665 8999999999999 32222222222
Q ss_pred HHHHHhhCCCceEEEecccC--ChHHHHhhhCCCCE
Q 037717 187 LKDLINYRPDLKLLISSATL--DAEKFSDYFGSAPI 220 (582)
Q Consensus 187 lk~~~~~~~~~kii~~SAT~--~~~~~~~~f~~~~v 220 (582)
.+.+...+++.++++||||+ +...+.+.+...|+
T Consensus 198 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 198 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred HHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 22222345788999999999 45666665544554
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=8.1e-16 Score=148.92 Aligned_cols=166 Identities=13% Similarity=0.004 Sum_probs=108.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------------chHHHHHHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------------P~r~~a~~~a~~va~ 118 (582)
..+......--..+++|.+++..+.+++++++++|||||||......++. |++.++.+++..+..
T Consensus 25 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 25 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 33333333333478999999999999999999999999999543333221 999999999888766
Q ss_pred HhCCccCcEEeEEEeeccc-------CCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHH
Q 037717 119 EMGVKLGHEVGYSIRFEDC-------TSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDL 190 (582)
Q Consensus 119 ~~~~~~g~~vgy~v~~~~~-------~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~ 190 (582)
......+..++........ .....+|+++||+.|.+.+..... +.++++||+||||...-+..+ ...++.+
T Consensus 105 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~-~~~~~~i 183 (220)
T 1t6n_A 105 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEI 183 (220)
T ss_dssp HTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHH-HHHHHHH
T ss_pred HHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCc-HHHHHHH
Confidence 5432223344332211110 112468999999999998876654 899999999999932211222 2233334
Q ss_pred Hh-hCCCceEEEecccC--ChHHHHhhhCCCCE
Q 037717 191 IN-YRPDLKLLISSATL--DAEKFSDYFGSAPI 220 (582)
Q Consensus 191 ~~-~~~~~kii~~SAT~--~~~~~~~~f~~~~v 220 (582)
.+ ..++.+++++|||+ +.+.+.+.+-..|+
T Consensus 184 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 216 (220)
T 1t6n_A 184 FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM 216 (220)
T ss_dssp HHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE
T ss_pred HHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe
Confidence 33 33478999999999 55666654433443
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=157.85 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=109.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhh--h---------------ccchHHHHHHHHH
Q 037717 54 LEMLQEERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQY--L---------------YEPRWVAAMSVAA 114 (582)
Q Consensus 54 ~~~~~~~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~--l---------------l~P~r~~a~~~a~ 114 (582)
..+......-...+++|.+++..+..+++++++||||||||. ++|.+ + +-|+|.+|.+++.
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~ 144 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFG 144 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHH
Confidence 333344445555889999999999999999999999999995 34432 1 1199999999988
Q ss_pred HHHHHhCCccCcEEeEEEeeccc------CCCCccEEEEChHHHHHHHHcCC--CCCCCCceEeecccCCCcchhHHHHH
Q 037717 115 RVSQEMGVKLGHEVGYSIRFEDC------TSDKTVLKYMTDCMLLREIVIEP--SLESYSVLIVDEAQERTLSTDNLFGL 186 (582)
Q Consensus 115 ~va~~~~~~~g~~vgy~v~~~~~------~~~~t~I~~~T~g~Ll~~l~~~~--~l~~~~~vViDE~HeR~~~~d~ll~~ 186 (582)
.+..... ..+..++........ ...+.+|+|+|||++++.+...+ .+.++++||||||| +..+..+.- .
T Consensus 145 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~-~ 221 (262)
T 3ly5_A 145 VLKELMT-HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEE-E 221 (262)
T ss_dssp HHHHHTT-TCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHH-H
T ss_pred HHHHHHh-hcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHH-H
Confidence 8776443 334444433221111 11347899999999999888765 48899999999999 322222222 2
Q ss_pred HHHHHh-hCCCceEEEecccC--ChHHHHhh-hCCCCE
Q 037717 187 LKDLIN-YRPDLKLLISSATL--DAEKFSDY-FGSAPI 220 (582)
Q Consensus 187 lk~~~~-~~~~~kii~~SAT~--~~~~~~~~-f~~~~v 220 (582)
+..++. ..++.|+++||||+ +...+++. +...++
T Consensus 222 l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 222 LKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 222222 34578999999999 55666664 443443
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.62 E-value=1.5e-15 Score=150.37 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=103.0
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhc--hHhhh--hc---------------c-----chHHHHHHHHHHHHHH
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTT--QIPQY--LY---------------E-----PRWVAAMSVAARVSQE 119 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt--~ip~~--ll---------------~-----P~r~~a~~~a~~va~~ 119 (582)
-..+++|.+++..+.+++++++++|||||||. ++|.+ +. . |+|.++.+++.++...
T Consensus 44 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 123 (253)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999995 33332 11 1 9999999998887654
Q ss_pred hCCccCcEEeEEEeecc------cCCCCccEEEEChHHHHHHHHcCCC-CCCCCceEeecccCCCcchhHHHHHHHHHHh
Q 037717 120 MGVKLGHEVGYSIRFED------CTSDKTVLKYMTDCMLLREIVIEPS-LESYSVLIVDEAQERTLSTDNLFGLLKDLIN 192 (582)
Q Consensus 120 ~~~~~g~~vgy~v~~~~------~~~~~t~I~~~T~g~Ll~~l~~~~~-l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~ 192 (582)
.. ..+..++....... ....+.+|+++||++|++.+..... +.++++||+||||. ..+..+ ...++.++.
T Consensus 124 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~~~~i~~ 200 (253)
T 1wrb_A 124 SL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR-MLDMGF-EPQIRKIIE 200 (253)
T ss_dssp HT-TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH-HHHTTC-HHHHHHHHH
T ss_pred hc-cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH-HHhCch-HHHHHHHHh
Confidence 32 22222222111111 1124679999999999998876654 88999999999992 111111 112223332
Q ss_pred ---hCC--CceEEEecccC--ChHHHHhhhCCCCEE
Q 037717 193 ---YRP--DLKLLISSATL--DAEKFSDYFGSAPIF 221 (582)
Q Consensus 193 ---~~~--~~kii~~SAT~--~~~~~~~~f~~~~v~ 221 (582)
... +.++++||||+ +...+++.+...|+.
T Consensus 201 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 236 (253)
T 1wrb_A 201 ESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIF 236 (253)
T ss_dssp SSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred hccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEE
Confidence 112 67999999999 455666655445543
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.56 E-value=9.3e-15 Score=140.44 Aligned_cols=143 Identities=16% Similarity=0.083 Sum_probs=91.9
Q ss_pred HhcCCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----------c-------chHHHHHH-HHHHHHHHh
Q 037717 60 ERKTLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----------E-------PRWVAAMS-VAARVSQEM 120 (582)
Q Consensus 60 ~r~~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----------~-------P~r~~a~~-~a~~va~~~ 120 (582)
....++.+++|.+++..+.+++++++.+|||||||+.+..++. . |++.++.+ +...+....
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999966554432 1 99999998 544444433
Q ss_pred CCccCcEEeEEEeecccC-------CCCccEEEEChHHHHHHHHcC-------CCCCCCCceEeecccCCC---cchhHH
Q 037717 121 GVKLGHEVGYSIRFEDCT-------SDKTVLKYMTDCMLLREIVIE-------PSLESYSVLIVDEAQERT---LSTDNL 183 (582)
Q Consensus 121 ~~~~g~~vgy~v~~~~~~-------~~~t~I~~~T~g~Ll~~l~~~-------~~l~~~~~vViDE~HeR~---~~~d~l 183 (582)
.. +..++... .+... ....+|+|+|++.|.+.+... ..+.++++|||||||... ....++
T Consensus 108 ~~--~~~v~~~~-g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 108 KK--WYRVIGLS-GDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp TT--TSCEEECC-C---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred cc--CceEEEEe-CCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 32 12222111 11111 123789999999999988764 337889999999999432 222222
Q ss_pred HHHHHHHHh-h---------CCCceEEEeccc
Q 037717 184 FGLLKDLIN-Y---------RPDLKLLISSAT 205 (582)
Q Consensus 184 l~~lk~~~~-~---------~~~~kii~~SAT 205 (582)
..+++.... . .++.++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 222222211 1 168999999998
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.54 E-value=2.7e-13 Score=151.29 Aligned_cols=108 Identities=18% Similarity=0.071 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchh--chHhhhhc--c--------chHHHHHHHHHHHHHHhCCccCcEEeEE
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKT--TQIPQYLY--E--------PRWVAAMSVAARVSQEMGVKLGHEVGYS 131 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKT--t~ip~~ll--~--------P~r~~a~~~a~~va~~~~~~~g~~vgy~ 131 (582)
+-.++.|...+..+.+++ |..+.|||||| ..+|.++. . |++.+|.+.+..+.... ..+|..||..
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~-~~lGLsv~~i 154 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY-RGLGLSVGVI 154 (997)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH-HTTTCCEEEC
T ss_pred CCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH-HhcCCeEEEE
Confidence 344677777777888888 88999999999 44555421 1 99999999987665543 2345555543
Q ss_pred Eeecc----cCCCCccEEEEChHHH-HHHHHcCC-------CCC---CCCceEeeccc
Q 037717 132 IRFED----CTSDKTVLKYMTDCML-LREIVIEP-------SLE---SYSVLIVDEAQ 174 (582)
Q Consensus 132 v~~~~----~~~~~t~I~~~T~g~L-l~~l~~~~-------~l~---~~~~vViDE~H 174 (582)
+...+ ...-.++|+|+|||.| ++.+..+- .+. ++.++||||+|
T Consensus 155 ~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 155 QHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp CTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred eCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 32211 1112579999999999 67776542 367 89999999999
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.48 E-value=4.1e-14 Score=155.56 Aligned_cols=125 Identities=11% Similarity=0.129 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEE--e
Q 037717 247 IVTALQIHVNEPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVL--A 324 (582)
Q Consensus 247 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kViv--a 324 (582)
...+..+.. ..+|.+|||+||....+.+++.+.. .. +..++.. .++.++++.|+.|. .|++ +
T Consensus 373 ~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~ 436 (540)
T 2vl7_A 373 SILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVM 436 (540)
T ss_dssp HHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC
T ss_pred HHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEe
Confidence 333444433 3468899999999999998876642 11 2234443 35667777776654 5666 8
Q ss_pred CCCCccccccCC----eeEEEeCCcccceeecCC-------------CCcccccccccCHHhHHHHhcCCCCCCC--CeE
Q 037717 325 TNIAETSLTIDG----IKYVIHPGFAKVKSYNPK-------------TGMESLLVNPISKASANQRTGLSERTGP--GKC 385 (582)
Q Consensus 325 T~iae~gidIp~----v~~VID~g~~k~~~yd~~-------------~~~~~l~~~~~S~~~~~QR~GRaGR~~~--G~~ 385 (582)
|..+..|||+|+ ++.||..|++-...-|+. .+... ...+.......|-+||+-|... |..
T Consensus 437 ~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Q~~GR~iR~~~D~g~v 515 (540)
T 2vl7_A 437 RAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDS-IIHDLTAIVIKQTIGRAFRDPNDYVKI 515 (540)
T ss_dssp ---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHHHHCCSTTCCCEE
T ss_pred cCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHHHHhCCcccCCCccEEE
Confidence 999999999998 899998998754432321 11110 1112225678899999999764 655
Q ss_pred EEe
Q 037717 386 FRL 388 (582)
Q Consensus 386 ~~L 388 (582)
+.+
T Consensus 516 ~ll 518 (540)
T 2vl7_A 516 YLC 518 (540)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.39 E-value=2.6e-13 Score=136.62 Aligned_cols=134 Identities=8% Similarity=-0.069 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHHHhCCccCcEEeE
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQEMGVKLGHEVGY 130 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~~~~~~~g~~vgy 130 (582)
+..+++|.+++..+..++..++++|||||||.++..++.. |++.++.+..+++.+... ..+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~-~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL-FSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTS-CCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcc-cccceEEE
Confidence 5789999999998887788899999999999665433321 999999999998876532 22222322
Q ss_pred EEeecccC---CCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhh-CCCceEEEecccC
Q 037717 131 SIRFEDCT---SDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINY-RPDLKLLISSATL 206 (582)
Q Consensus 131 ~v~~~~~~---~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~-~~~~kii~~SAT~ 206 (582)
-....... ....+|+++|++.+.+.. ...+.++++||+||||.-. . . .+..++.. .+..+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~-~-~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT-G-K----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCC-H-H----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCC-c-c----cHHHHHHHhhcCCeEEEEeCCC
Confidence 11111111 156899999999876542 1237789999999999433 2 1 23333332 3578999999999
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.33 E-value=5e-12 Score=123.94 Aligned_cols=128 Identities=20% Similarity=0.097 Sum_probs=91.8
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcEEeEEEee
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRF 134 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~ 134 (582)
...+++|.+++..+.+++.++++||||+|||.++..++.. |++.++.++.+.+.+ ++.. .++.-
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~-~~~~---~v~~~--- 164 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGI-FGEE---YVGEF--- 164 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGG-GCGG---GEEEE---
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh-CCCC---eEEEE---
Confidence 4568899999999999989999999999999776544433 999999988887766 4332 03321
Q ss_pred cccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 135 EDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 135 ~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
........+|+++|++.+.+.... ...++++|||||+|.-... . .+.+....+..++++||||+
T Consensus 165 ~g~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l~~~-~-----~~~i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 165 SGRIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLPAE-S-----YVQIAQMSIAPFRLGLTATF 228 (237)
T ss_dssp SSSCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCCCTT-T-----HHHHHHTCCCSEEEEEEESC
T ss_pred eCCCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccCCCh-H-----HHHHHHhccCCEEEEEecCC
Confidence 122234678999999998776532 1356899999999943321 1 23344445678899999999
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.31 E-value=1.8e-12 Score=129.68 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=83.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCC-CcE-EEEeCCCCccccccC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPER-ARK-VVLATNIAETSLTID 335 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~k-VivaT~iae~gidIp 335 (582)
++.++|||+.....++.+...|.... ++.+..+||++++++|+++++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46799999999999999999997631 45577899999999999999999888 566 789999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCCCC---CeEEEeeChhhhhh
Q 037717 336 GIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERTGP---GKCFRLYTLHNYHR 396 (582)
Q Consensus 336 ~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~---G~~~~L~~~~~~~~ 396 (582)
++++|| .||+ |.+.+.+.||.||++|.|. ...|+++++...+.
T Consensus 183 ~a~~VI--------~~d~----------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 183 SANRVI--------HFDR----------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TCSEEE--------ECSC----------CSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCEEE--------EECC----------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 999999 4554 3455668999999999885 45799999876654
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.18 E-value=3.4e-09 Score=116.68 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=99.4
Q ss_pred ceEEEecccC-ChHHHHhhhCCC-CEE----e-eCCcee--ceeEEEecC--C------chhHHHHHHHHHHHHHhcCCC
Q 037717 197 LKLLISSATL-DAEKFSDYFGSA-PIF----K-IPGRRY--PVELFYTKA--P------EVDYIEAAIVTALQIHVNEPT 259 (582)
Q Consensus 197 ~kii~~SAT~-~~~~~~~~f~~~-~v~----~-i~gr~~--~v~~~~~~~--~------~~~~~~~~~~~~~~i~~~~~~ 259 (582)
..+|++|||+ ..+.|.+-+|-. +.. . .-+.++ ...+ |.+. + ..++.......+..+.... +
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l-~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYEC-YIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-K 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEE-EEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-S
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEE-EEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-C
Confidence 5789999999 556677777644 321 0 001111 1111 2211 1 1234455455555555443 6
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeC--CCCccccccC--
Q 037717 260 GDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLAT--NIAETSLTID-- 335 (582)
Q Consensus 260 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT--~iae~gidIp-- 335 (582)
|.+|||+||....+.+++. .+..+..=..+++.++..+.++ ..+ .-|++|| .....|||+|
T Consensus 394 g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEET
T ss_pred CCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceeccccccccc
Confidence 7899999999998888751 1222333233556655555554 223 3799998 5778899999
Q ss_pred ---CeeEEEeCCcccceeecCC-----------CCcccc---cccccCHHhHHHHhcCCCCCCC--CeEEEe
Q 037717 336 ---GIKYVIHPGFAKVKSYNPK-----------TGMESL---LVNPISKASANQRTGLSERTGP--GKCFRL 388 (582)
Q Consensus 336 ---~v~~VID~g~~k~~~yd~~-----------~~~~~l---~~~~~S~~~~~QR~GRaGR~~~--G~~~~L 388 (582)
..+.||=.|++--.. ||. .|-+.. ...| -.....|-+||+=|... |..+.+
T Consensus 459 ~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp TEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred CCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 367777777664333 331 121111 2334 45667899999999875 544443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.70 E-value=4.7e-05 Score=84.47 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhCCCeEEEECCCCCchhchHhh----hh------------ccchHHHHHHHHHHHHHHhCCccCc--EE
Q 037717 67 YPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQ----YL------------YEPRWVAAMSVAARVSQEMGVKLGH--EV 128 (582)
Q Consensus 67 ~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~----~l------------l~P~r~~a~~~a~~va~~~~~~~g~--~v 128 (582)
.+.|.+++..+..+++++++|++||||||.+-. +. .-|++.+|..+.+.+..... .++. ..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~-~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHH-HSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHh-cCCCCHHH
Confidence 355777888888899999999999999965432 21 11999999888665543211 1110 00
Q ss_pred eEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 129 GYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 129 gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
...+.....+ -.+++-.+++... ..........+++|||||++ .++.+.+..+++. ..++.|+|++.-.
T Consensus 230 ~~~~~~~~~T--ih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~~---l~~~~~liLvGD~ 298 (608)
T 1w36_D 230 KKRIPEDAST--LHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLIDA---LPDHARVIFLGDR 298 (608)
T ss_dssp CCSCSCCCBT--TTSCC------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHHT---CCTTCEEEEEECT
T ss_pred Hhccchhhhh--hHhhhccCCCchH-HHhccCCCCCCCEEEEechh--hCCHHHHHHHHHh---CCCCCEEEEEcch
Confidence 0000000000 0111212222110 00111123378999999999 4454444444443 3456788887543
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.45 E-value=0.00021 Score=78.60 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHH
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAA 114 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~ 114 (582)
..+.+.|.+++..+..+++++|+|+.|+||||.+-.++.. |+..+|..+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 3467889999999999999999999999999876544321 76666655443
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.0015 Score=59.96 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.+++.||+||||||++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4789999999999999876
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.09 E-value=0.00069 Score=63.53 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.3
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+++
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999764
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.01 E-value=0.00099 Score=71.18 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHh----CCC-eEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAVS----GYP-VLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARV 116 (582)
Q Consensus 66 i~~~~~~il~~i~----~~~-~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~v 116 (582)
+.+.|.+++..+. +++ +++|.|+.|||||+.+-..+.. |+..+|..+..++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 4566777776553 334 9999999999999766443211 6666665554443
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0071 Score=57.85 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=55.6
Q ss_pred hCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEE-Eeecc----cCC-----CCccEEEE
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYS-IRFED----CTS-----DKTVLKYM 147 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~-v~~~~----~~~-----~~t~I~~~ 147 (582)
..+..++++|++||||||.+-+. +.+.+. .+. .|.+- -..+. ... ....+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~------------~~r~~~-~g~----kVli~~~~~d~r~~~~i~srlG~~~~~~~~~ 72 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRR------------LHRLEY-ADV----KYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE 72 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHH------------HHHHHH-TTC----CEEEEEECCCGGGCSSCCCCCCCSSCCEEES
T ss_pred CCcEEEEEECCCCCcHHHHHHHH------------HHHHHh-cCC----EEEEEEeccCchHHHHHHHhcCCCccccccC
Confidence 35678999999999999876443 233221 121 12111 01110 110 01123455
Q ss_pred ChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 148 TDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 148 T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
+..-++..+.....-.++++|||||++- +..+ .+..++.+... ++.+|+..-
T Consensus 73 ~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 73 SAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp STHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 5666666665433345689999999984 2233 34445554442 566666544
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.003 Score=56.48 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.3
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.+++.||+||||||++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999876
No 101
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0057 Score=61.76 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCC
Q 037717 163 ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLD 207 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~ 207 (582)
...-+|++||+|.-. ..+++..+++.......++-+|+.++|++
T Consensus 131 ~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 345689999999555 77888877764333344667788899984
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.76 E-value=0.0027 Score=60.25 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=18.9
Q ss_pred HHHHHHhCCC---eEEEECCCCCchhchH
Q 037717 72 ELLQAVSGYP---VLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~~---~viv~a~TGSGKTt~i 97 (582)
.+...+..++ .+++.||+|+|||+.+
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3344444444 7999999999999765
No 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.0074 Score=56.42 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=18.2
Q ss_pred HHHHHHhCC--CeEEEECCCCCchhchH
Q 037717 72 ELLQAVSGY--PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~--~~viv~a~TGSGKTt~i 97 (582)
.+...+..+ ..+++.||+|+|||+.+
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 334444443 35999999999999665
No 104
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.64 E-value=0.0079 Score=63.32 Aligned_cols=110 Identities=24% Similarity=0.327 Sum_probs=60.0
Q ss_pred CCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
..+++++|++||||||.+-.+... +.|.++......++...+..+ |. ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-----~~-----~~~~----- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-----YG-----EPNN----- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-----EC-----CTTC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-----ee-----cccc-----
Confidence 468999999999999877554311 555555554444444433221 00 0000
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCc--chhHHHHHHHHHHh-hCCCceEEEecccC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTL--STDNLFGLLKDLIN-YRPDLKLLISSATL 206 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~--~~d~ll~~lk~~~~-~~~~~kii~~SAT~ 206 (582)
..|..+...........++++||||++- |.. ....++..++.+.+ ..|+.-+++++|+.
T Consensus 162 -~dp~~i~~~al~~a~~~~~DvvIIDTaG-r~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 -QNPIEIAKKGVDIFVKNKMDIIIVDTAG-RHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp -SCHHHHHHHHHHHTTTTTCSEEEEEECC-CSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCC-CccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 1133333222222234689999999996 433 22233444443332 45777778888876
No 105
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.61 E-value=0.012 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=19.0
Q ss_pred HHHHHhCCCeEEEECCCCCchhchH
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
+-.+...+..+++.||+|+|||+.+
T Consensus 17 ~~~~a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 17 LQQLSETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp HHHHTTCCSCEEEESSTTSSHHHHH
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHH
Confidence 3334456778999999999999554
No 106
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.0032 Score=63.45 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
++.+++.||||+|||+++
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 689999999999999654
No 107
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0015 Score=62.47 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.+++.||+|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4688999999999999765
No 108
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.58 E-value=0.0034 Score=69.54 Aligned_cols=174 Identities=18% Similarity=0.280 Sum_probs=93.5
Q ss_pred eEEEecccC-ChHHHHhhhCCCC-EEeeCCceec---eeEEEecCC-------chhHHHHHHHHHHHHHhcCCCCCEEEE
Q 037717 198 KLLISSATL-DAEKFSDYFGSAP-IFKIPGRRYP---VELFYTKAP-------EVDYIEAAIVTALQIHVNEPTGDILVF 265 (582)
Q Consensus 198 kii~~SAT~-~~~~~~~~f~~~~-v~~i~gr~~~---v~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~g~iLVF 265 (582)
.+|++|||+ ..+.|.+.+|-.. .+.+ +.+++ ..+.+.... ...+.......+..+.... +|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~-~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKI-GEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEEC-CCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeec-CCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 458999999 6677777776431 1221 11111 112221111 1223344444444544433 5779999
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC--CCccccccCC--eeEEE
Q 037717 266 LTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATN--IAETSLTIDG--IKYVI 341 (582)
Q Consensus 266 l~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~--iae~gidIp~--v~~VI 341 (582)
+||....+.+++.+. . + +.. ..-+++..++..+++.|+ +.--|+++|. ....|||+|+ .+.||
T Consensus 455 F~Sy~~l~~v~~~l~-~---~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-F---E-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp ESCHHHHHHHTSSCC-S---C-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred eCCHHHHHHHHHHHH-h---c-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 999999888877664 1 1 111 444555567888888887 7788999974 8888999997 44677
Q ss_pred eCCcccceeecCC-------------CCcccccccccCHHhHHHHhcCCCCCCC--CeEEEe
Q 037717 342 HPGFAKVKSYNPK-------------TGMESLLVNPISKASANQRTGLSERTGP--GKCFRL 388 (582)
Q Consensus 342 D~g~~k~~~yd~~-------------~~~~~l~~~~~S~~~~~QR~GRaGR~~~--G~~~~L 388 (582)
=.|++-... ||. .+...-...| ......|-+||+=|... |..+.+
T Consensus 522 I~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 522 LAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp ESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 667653221 110 1110001223 34567899999999775 655444
No 109
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.51 E-value=0.0071 Score=62.10 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCCCCCCceEeecccCC
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQER 176 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~HeR 176 (582)
.+...+...+...+..+|||||+|.-
T Consensus 106 ~l~~~~~~~~~~~~~~vliiDe~~~l 131 (373)
T 1jr3_A 106 DLLDNVQYAPARGRFKVYLIDEVHML 131 (373)
T ss_dssp HHHHHTTSCCSSSSSEEEEEECGGGS
T ss_pred HHHHHHhhccccCCeEEEEEECcchh
Confidence 44444444455667889999999943
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.45 E-value=0.0052 Score=62.57 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecc
Q 037717 152 LLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSA 204 (582)
Q Consensus 152 Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SA 204 (582)
+.+.+...+....+.++||||+|.-+ .+..-.++|.+-.-.++..+|+.+-
T Consensus 96 l~~~~~~~~~~~~~kvviIdead~l~--~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 96 VTEKLNEHARLGGAKVVWVTDAALLT--DAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp HHHHTTSCCTTSSCEEEEESCGGGBC--HHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred HHHHHhhccccCCcEEEEECchhhcC--HHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 33344444556789999999999433 2333334444322222455555443
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.42 E-value=0.0049 Score=57.11 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=17.3
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.++..+++||.||||||.+-+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHH
Confidence 367889999999999987633
No 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.41 E-value=0.0064 Score=60.81 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+.+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999654
No 113
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.40 E-value=0.045 Score=60.67 Aligned_cols=55 Identities=25% Similarity=0.238 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh---hc-c------------chHHHHHHHHHHHHHHhCC
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY---LY-E------------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~---ll-~------------P~r~~a~~~a~~va~~~~~ 122 (582)
+.+.|.+++. ..+..++|.|+.|||||+.+-.- ++ + +++.+|..+..|+....+.
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 5677888876 33566899999999999665432 21 1 7788888998888877654
No 114
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.26 E-value=0.0039 Score=61.64 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.7
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
.....+++.||+|+|||+++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 45678999999999999654
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.12 E-value=0.0098 Score=58.43 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCCceEeecccCC------Cc-chhHHHHHHHHHHhhC--CCceEEEecccCChHHHHh
Q 037717 163 ESYSVLIVDEAQER------TL-STDNLFGLLKDLINYR--PDLKLLISSATLDAEKFSD 213 (582)
Q Consensus 163 ~~~~~vViDE~HeR------~~-~~d~ll~~lk~~~~~~--~~~kii~~SAT~~~~~~~~ 213 (582)
...++|+|||+|.- +. ....++..+...+... +..+++++.+|-.++.+..
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 44689999999831 11 1233455555544321 3456666667765555543
No 116
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.08 E-value=0.0064 Score=60.48 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
..+.+++.||+|+|||+++
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999665
No 117
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.08 E-value=0.01 Score=61.67 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999554
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.07 E-value=0.0065 Score=61.41 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=15.6
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+++
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999765
No 119
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.98 E-value=0.0045 Score=60.19 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.2
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
.....+++.||+|+|||+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34567999999999999654
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.94 E-value=0.03 Score=56.33 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=13.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..+++.||+|+|||+.+
T Consensus 49 ~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA 65 (324)
T ss_dssp SEEEECSSTTSSHHHHH
T ss_pred eEEEeeCcCCCCHHHHH
Confidence 45778888999999654
No 121
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.012 Score=63.78 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=25.1
Q ss_pred CCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCC
Q 037717 163 ESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLD 207 (582)
Q Consensus 163 ~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~ 207 (582)
....+|||||+|.-.....-.+..+..++.. .+.++|+.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 4567999999994333221122233333332 4667888888764
No 122
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.84 E-value=0.025 Score=57.26 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=37.3
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
..+++.||+|+|||+.+ +.++...+..+. .+... .. ...+.+...+..
T Consensus 56 ~~vll~G~~GtGKT~la----------------~~ia~~~~~~~~-----~~~~~-~~--------~~~~~~~~~~~~-- 103 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA----------------NIISYEMSANIK-----TTAAP-MI--------EKSGDLAAILTN-- 103 (338)
T ss_dssp CCEEEECSTTSSHHHHH----------------HHHHHHTTCCEE-----EEEGG-GC--------CSHHHHHHHHHT--
T ss_pred CeEEEECcCCCCHHHHH----------------HHHHHHhCCCeE-----Eecch-hc--------cchhHHHHHHHh--
Confidence 57999999999999654 344555443311 11100 00 134444444432
Q ss_pred CCCCCCceEeecccCCC
Q 037717 161 SLESYSVLIVDEAQERT 177 (582)
Q Consensus 161 ~l~~~~~vViDE~HeR~ 177 (582)
+.+..+|+|||+|.-.
T Consensus 104 -~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 104 -LSEGDILFIDEIHRLS 119 (338)
T ss_dssp -CCTTCEEEEETGGGCC
T ss_pred -ccCCCEEEEechhhcC
Confidence 4567999999999544
No 123
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.83 E-value=0.0045 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=19.3
Q ss_pred HHHHHhCCCeEEEECCCCCchhchH
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+...+..+++.||+|+|||+.+
T Consensus 20 ~~~~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 20 VEAAAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHTCSSCEEEEEETTCCHHHHH
T ss_pred HHHHhCCCCcEEEECCCCccHHHHH
Confidence 3344566788999999999999554
No 124
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.02 Score=58.26 Aligned_cols=43 Identities=21% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 162 LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 162 l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
..+..++||||+|. ++.+..-.+++.+....++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999995 55544444444433333456666665544
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.017 Score=58.85 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=20.2
Q ss_pred HHHHHHhCCCe--EEEECCCCCchhchH
Q 037717 72 ELLQAVSGYPV--LAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~~~--viv~a~TGSGKTt~i 97 (582)
.+-..+..++. +++.||+|+||||.+
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 34455666766 999999999999776
No 126
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.013 Score=59.43 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.2
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 367999999999999654
No 127
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.76 E-value=0.0091 Score=61.38 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+++
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999654
No 128
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.75 E-value=0.065 Score=53.47 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.8
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..++.+++.||+|+|||+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 45678999999999999664
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.68 E-value=0.012 Score=62.08 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=59.6
Q ss_pred CCeEEEECCCCCchhchHhhhhc---c-----------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLY---E-----------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll---~-----------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
..+++++|++|+||||.+-.+.. . |.|.+|.......+...+..+ |. . ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~~---~-~~~------ 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----FG---N-PQE------ 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----EC---C-TTC------
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----Ee---c-CCC------
Confidence 46899999999999987655432 1 666666554444444333221 00 0 000
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATL 206 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~ 206 (582)
..|.-+.+.......-.++++||||.+= |....+.++..++.+.. ..|+.-+++++||.
T Consensus 165 -~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 -KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 1232222222111112358999999995 44333445554544332 34777788888876
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.019 Score=57.44 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=17.9
Q ss_pred HHHHHhCCC--eEEEECCCCCchhchH
Q 037717 73 LLQAVSGYP--VLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i~~~~--~viv~a~TGSGKTt~i 97 (582)
+...+..++ .+++.||+|+|||+.+
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 334444443 6999999999999665
No 131
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.56 E-value=0.031 Score=56.10 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=15.2
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+.+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999654
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.54 E-value=0.028 Score=59.53 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+++
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999765
No 133
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.54 E-value=0.021 Score=57.09 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCCCceEeecccCCCcchhHHHHHHHHHHh-hCCCceEEEecccCChHHHHhh
Q 037717 162 LESYSVLIVDEAQERTLSTDNLFGLLKDLIN-YRPDLKLLISSATLDAEKFSDY 214 (582)
Q Consensus 162 l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-~~~~~kii~~SAT~~~~~~~~~ 214 (582)
+.++++||||.+- +......++..+..++. ..++-.+++++||.+...+.++
T Consensus 180 ~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 180 FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 3678999999664 44443344444444433 2244557888788765555443
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.53 E-value=0.032 Score=56.04 Aligned_cols=110 Identities=24% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccE
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVL 144 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I 144 (582)
.+++++++|++||||||.+-.+... ++|.++......+++..+.. + +. .....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~----~---~~--~~s~~---- 169 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGAT----V---IS--HSEGA---- 169 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE----E---EC--CSTTC----
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCc----E---Ee--cCCcc----
Confidence 3468899999999999876544211 55555543333333333321 1 00 00000
Q ss_pred EEEChHHH-HHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHh-------hCCCceEEEecccC
Q 037717 145 KYMTDCML-LREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLIN-------YRPDLKLLISSATL 206 (582)
Q Consensus 145 ~~~T~g~L-l~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~-------~~~~~kii~~SAT~ 206 (582)
.+..+ .+.+. .....++++||||++- |....+.++..++.+.+ ..|+--++.+.||.
T Consensus 170 ---~~~~v~~~al~-~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 170 ---DPAAVAFDAVA-HALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ---CHHHHHHHHHH-HHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ---CHHHHHHHHHH-HHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 12222 11111 1123567999999996 54444555554444332 12454566667764
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.52 E-value=0.022 Score=57.55 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+++
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457999999999999654
No 136
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.041 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=17.2
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.++..+++|+.||||||.+-+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHH
Confidence 457899999999999977633
No 137
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.45 E-value=0.033 Score=55.50 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=14.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+++
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356888999999999543
No 138
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.39 E-value=0.064 Score=53.77 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCC-CceEEEec
Q 037717 151 MLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRP-DLKLLISS 203 (582)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~-~~kii~~S 203 (582)
-+...+...|...++.++||||+|.-+ .+..-.++|. +...| ...+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt--~~a~naLLk~-LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMT--QQAANAFLKA-LEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBC--HHHHHHTHHH-HHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHHHhC--HHHHHHHHHH-HhCCCCCeEEEEEE
Confidence 345555556667889999999999433 2222233333 33333 44555543
No 139
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.34 E-value=0.017 Score=58.59 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred HHHHHHHhCC--CeEEEECCCCCchhchH
Q 037717 71 EELLQAVSGY--PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 71 ~~il~~i~~~--~~viv~a~TGSGKTt~i 97 (582)
+.+...+..+ ..+++.||+|+|||+.+
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 3455555555 55999999999999765
No 140
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.29 E-value=0.083 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
...+..+++.||+|+|||+.+
T Consensus 26 ~~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHH
Confidence 345678999999999999554
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.28 E-value=0.048 Score=55.96 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=26.0
Q ss_pred CCchHHHHHHHHHHHHHcCCCcCCCc---cchhch-hhhcCCCChHH
Q 037717 428 DPPLEEALLKAFELLYALGALNKAGQ---LTRVGR-QMAEFPIDPKL 470 (582)
Q Consensus 428 ~~p~~~~i~~al~~L~~lgal~~~~~---lT~lG~-~~a~lpl~p~~ 470 (582)
.+.....+...++.|...|.|..... -..-|+ ...++.+++..
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~ 374 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLD 374 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHH
Confidence 44567889999999999999965321 112343 24556666653
No 142
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.27 E-value=0.015 Score=59.75 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=15.9
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
..+.+++.||+|+|||+.+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999654
No 143
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.27 E-value=0.024 Score=55.01 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.3
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+||||.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456899999999999665
No 144
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.21 E-value=0.035 Score=56.41 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=21.4
Q ss_pred HHHhCCCeEEEECCCCCchhchHhhh
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
-.+..++++.|+|||||||||.+-.+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l 191 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSI 191 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHG
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHH
Confidence 34578899999999999999877443
No 145
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.18 E-value=0.029 Score=58.93 Aligned_cols=101 Identities=23% Similarity=0.122 Sum_probs=61.5
Q ss_pred CCCeEEEECCCCCchhchHhhhhc-c------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHH
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLY-E------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCM 151 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll-~------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~ 151 (582)
..++.+|.|+.|||||+.+-..+. . |++.++..+.+++... |. ...+...+.|-+.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~~~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~~~~~~V~T~ds 222 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANAS-----GI------------IVATKDNVRTVDS 222 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCTTTCEEEESCHHHHHHHHHHHTTT-----SC------------CCCCTTTEEEHHH
T ss_pred cccEEEEEcCCCCCHHHHHHHHhccCCeEEEeCCHHHHHHHHHHhhhc-----Cc------------cccccceEEEeHH
Confidence 446889999999999988866543 2 9999998887766321 10 0112334677665
Q ss_pred HHHHHHcCCC--CCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEeccc
Q 037717 152 LLREIVIEPS--LESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSAT 205 (582)
Q Consensus 152 Ll~~l~~~~~--l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT 205 (582)
++. +... ...+++|||||+- .++...+..++.. .+..++|+..-+
T Consensus 223 fL~---~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvGD~ 269 (446)
T 3vkw_A 223 FLM---NYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYGDT 269 (446)
T ss_dssp HHH---TTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEECT
T ss_pred hhc---CCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEecCc
Confidence 442 2221 2358999999996 4454454444432 123566665443
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.023 Score=59.06 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
..+-+++.||+|||||+. |+.+|.+.+..+ +.+...+..+. .++-.+..++.+..
T Consensus 181 ~prGvLL~GPPGTGKTll----------------AkAiA~e~~~~f-----~~v~~s~l~sk----~vGese~~vr~lF~ 235 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLL----------------ARAVAHHTDCKF-----IRVSGAELVQK----YIGEGSRMVRELFV 235 (405)
T ss_dssp CCCCEEEESCSSSSHHHH----------------HHHHHHHHTCEE-----EEEEGGGGSCS----STTHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHH----------------HHHHHHhhCCCc-----eEEEhHHhhcc----ccchHHHHHHHHHH
Confidence 346799999999999944 366677776553 22322222211 11223344444432
Q ss_pred CCCCCCCCceEeeccc----CCCcc---hh-----HHHHHHHHHHhhCCCceEEEecccC
Q 037717 159 EPSLESYSVLIVDEAQ----ERTLS---TD-----NLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 159 ~~~l~~~~~vViDE~H----eR~~~---~d-----~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
...-..-.+|.|||++ .|+-. .+ .+..+|..+-.....-.++++-||=
T Consensus 236 ~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 236 MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 2212233789999999 23211 11 2334444433333444566666665
No 147
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.06 E-value=0.011 Score=62.61 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=17.4
Q ss_pred HHHhCCC--eEEEECCCCCchhchH
Q 037717 75 QAVSGYP--VLAIVGETGSGKTTQI 97 (582)
Q Consensus 75 ~~i~~~~--~viv~a~TGSGKTt~i 97 (582)
..+..++ .+++.||+|+|||+.+
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4444444 5999999999999664
No 148
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.04 E-value=0.18 Score=55.36 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----c---------chHHHHHHHHHHHHHHhCCc---cCc
Q 037717 64 LPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----E---------PRWVAAMSVAARVSQEMGVK---LGH 126 (582)
Q Consensus 64 lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----~---------P~r~~a~~~a~~va~~~~~~---~g~ 126 (582)
+.+.++|..++..+..++.+++.++-|+|||+.+..+++ + |++..|..+...+....... +..
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 457899999999887778899999999999976654322 1 77777777766665544321 111
Q ss_pred EEe----EEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEe
Q 037717 127 EVG----YSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLIS 202 (582)
Q Consensus 127 ~vg----y~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~ 202 (582)
... ..+.+ ..+..|.+.+.+ -..+.+. +.+++|+||+|+-.-..+ +...+...+..+++.+++++
T Consensus 242 ~~~~~~~~~i~~----~nGs~i~~~s~~--~~~lrG~----~~~~~iiDE~~~~~~~~~-l~~~~~~~l~~~~~~~ii~i 310 (592)
T 3cpe_A 242 GIVEWNKGSIEL----DNGSSIGAYASS--PDAVRGN----SFAMIYIEDCAFIPNFHD-SWLAIQPVISSGRRSKIIIT 310 (592)
T ss_dssp CEEEECSSEEEE----TTSCEEEEEECC--HHHHHHS----CCSEEEEETGGGCTTHHH-HHHHHHHHHSSSSCCEEEEE
T ss_pred ccccCCccEEEe----cCCCEEEEEeCC--CCCccCC----CcceEEEehhccCCchhH-HHHHHHHHhccCCCceEEEE
Confidence 111 11111 124455544321 0111111 368999999995432122 33344444433344565554
Q ss_pred c-ccCChHHHHhhh
Q 037717 203 S-ATLDAEKFSDYF 215 (582)
Q Consensus 203 S-AT~~~~~~~~~f 215 (582)
| ++.. ..+-+.+
T Consensus 311 sTP~~~-~~~y~~~ 323 (592)
T 3cpe_A 311 TTPNGL-NHFYDIW 323 (592)
T ss_dssp ECCCTT-SHHHHHH
T ss_pred eCCCCc-hhHHHHH
Confidence 4 3333 3444433
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.042 Score=54.86 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=18.3
Q ss_pred HHHHHHhCCC--eEEEECCCCCchhchH
Q 037717 72 ELLQAVSGYP--VLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~~~~--~viv~a~TGSGKTt~i 97 (582)
.+...+..++ .+++.||+|+|||+.+
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 3444454443 4899999999999665
No 150
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.91 E-value=0.027 Score=62.72 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHH-hCCCeEEEECCCCCchhchHhhhhcc------------chHHHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAV-SGYPVLAIVGETGSGKTTQIPQYLYE------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 66 i~~~~~~il~~i-~~~~~viv~a~TGSGKTt~ip~~ll~------------P~r~~a~~~a~~va~ 118 (582)
+.+.|.+++..+ ......+|.||+|+|||+.+-..+.. |+-.|+-.+..++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 456677766554 56679999999999999766655443 899999999988864
No 151
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.88 E-value=0.028 Score=59.60 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+++
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999654
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.86 E-value=0.028 Score=57.68 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=29.4
Q ss_pred CCchHHHHHHHHHHHHHcCCCcCCCc-cchhchh-hhcCCCChHHHHHH
Q 037717 428 DPPLEEALLKAFELLYALGALNKAGQ-LTRVGRQ-MAEFPIDPKLSKTI 474 (582)
Q Consensus 428 ~~p~~~~i~~al~~L~~lgal~~~~~-lT~lG~~-~a~lpl~p~~~k~l 474 (582)
+|.....+..+++.|...|.+..... -..-|+. .-.+.++|..-...
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~i~~~ 376 (387)
T 2v1u_A 328 EHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLDADRLAVENA 376 (387)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEecCCHHHHHHH
Confidence 45567888999999999999975210 0123432 44566777654433
No 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.85 E-value=0.22 Score=45.50 Aligned_cols=17 Identities=47% Similarity=0.704 Sum_probs=14.7
Q ss_pred eEEEECCCCCchhchHh
Q 037717 82 VLAIVGETGSGKTTQIP 98 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip 98 (582)
.+.+.||.||||||++-
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999873
No 154
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.83 E-value=0.25 Score=51.01 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=76.9
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----c---------chHHHHHHHHHHHHHHh---CCccC
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----E---------PRWVAAMSVAARVSQEM---GVKLG 125 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----~---------P~r~~a~~~a~~va~~~---~~~~g 125 (582)
.+.+.++|..++..+...+.+++..+-+.|||+.+..+++ . |++..|..+..++.... ...+.
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 3567999999999887778899999999999976543322 1 77777766655544332 11111
Q ss_pred cEE----eEEEeecccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEE
Q 037717 126 HEV----GYSIRFEDCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLI 201 (582)
Q Consensus 126 ~~v----gy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~ 201 (582)
..+ ...+.+ ..+..|.+.+.. -+.+.+ .+++++|+||+|.-. +.+-++..++..+..+++.++++
T Consensus 241 ~~~~~~~~~~I~f----~nGs~i~~lsa~--~~slrG----~~~~~viiDE~a~~~-~~~el~~al~~~ls~~~~~kiii 309 (385)
T 2o0j_A 241 PGIVEWNKGSIEL----DNGSSIGAYASS--PDAVRG----NSFAMIYIEDCAFIP-NFHDSWLAIQPVISSGRRSKIII 309 (385)
T ss_dssp CCEEEECSSEEEE----TTSCEEEEEECS--HHHHHT----SCCSEEEEESGGGST-THHHHHHHHHHHHHSTTCCEEEE
T ss_pred hhhccCCccEEEe----CCCCEEEEEECC--CCCccC----CCCCEEEechhhhcC-CCHHHHHHHHHHhhcCCCCcEEE
Confidence 111 111222 124455554421 011211 235889999999543 21233344444444444556555
Q ss_pred e-cccCChHHHHhhh
Q 037717 202 S-SATLDAEKFSDYF 215 (582)
Q Consensus 202 ~-SAT~~~~~~~~~f 215 (582)
. |++.. ..|-+.+
T Consensus 310 iSTP~g~-n~fy~l~ 323 (385)
T 2o0j_A 310 TTTPNGL-NHFYDIW 323 (385)
T ss_dssp EECCCSS-SHHHHHH
T ss_pred EeCCCCc-hhHHHHH
Confidence 4 44444 3554444
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.041 Score=57.99 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=54.7
Q ss_pred hCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHH
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIV 157 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~ 157 (582)
.-.+-+++.||+|+|||+++ +.+|.+.+..+ +.+......+. .++..+..++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLA----------------kAiA~e~~~~f-----i~vs~s~L~sk----~vGesek~ir~lF 295 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCA----------------RAVANRTDATF-----IRVIGSELVQK----YVGEGARMVRELF 295 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHH----------------HHHHHHHTCEE-----EEEEGGGGCCC----SSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHH----------------HHHHhccCCCe-----EEEEhHHhhcc----cCCHHHHHHHHHH
Confidence 34577999999999999443 55677776543 22222222111 1222344444443
Q ss_pred cCCCCCCCCceEeeccc----CCCcch--------hHHHHHHHHHHhhCCCceEEEecccC
Q 037717 158 IEPSLESYSVLIVDEAQ----ERTLST--------DNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 158 ~~~~l~~~~~vViDE~H----eR~~~~--------d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
....-..-.+|++||++ .|+-.. -.+..+|..+-.....-.++++-||=
T Consensus 296 ~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 296 EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 32222334799999999 342211 12333444433333444566666775
No 156
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.65 E-value=0.047 Score=54.39 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=14.0
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.||+|+|||+.+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5899999999999664
No 157
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.49 E-value=0.11 Score=53.56 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=15.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.||+|+|||+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3567999999999999554
No 158
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.45 E-value=0.025 Score=53.39 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHhCCCeEEEECCCCCchhchHh
Q 037717 65 PIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 65 Pi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip 98 (582)
|-.--+..+++.+..++++.+.||.||||||++-
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 4444456788889999999999999999999873
No 159
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.026 Score=59.42 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=39.0
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
.+-+++.||+|||||+.+ +.+|.+.+..+ +.+...+..+. .++-.+.+++.+...
T Consensus 215 prGvLLyGPPGTGKTllA----------------kAiA~e~~~~f-----~~v~~s~l~~~----~vGese~~ir~lF~~ 269 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA----------------RACAAQTNATF-----LKLAAPQLVQM----YIGEGAKLVRDAFAL 269 (434)
T ss_dssp CCEEEEESCTTSSHHHHH----------------HHHHHHHTCEE-----EEEEGGGGCSS----CSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHH----------------HHHHHHhCCCE-----EEEehhhhhhc----ccchHHHHHHHHHHH
Confidence 467999999999999443 56677776543 22222221111 112233444444322
Q ss_pred CCCCCCCceEeeccc
Q 037717 160 PSLESYSVLIVDEAQ 174 (582)
Q Consensus 160 ~~l~~~~~vViDE~H 174 (582)
..-..-.+|+|||++
T Consensus 270 A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 270 AKEKAPTIIFIDELD 284 (434)
T ss_dssp HHHHCSEEEEEECTH
T ss_pred HHhcCCeEEeecchh
Confidence 111223789999999
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.04 Score=56.38 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHHHHHcCCCcCCCc-cchhch-hhhcCCCChHHHH
Q 037717 428 DPPLEEALLKAFELLYALGALNKAGQ-LTRVGR-QMAEFPIDPKLSK 472 (582)
Q Consensus 428 ~~p~~~~i~~al~~L~~lgal~~~~~-lT~lG~-~~a~lpl~p~~~k 472 (582)
+|.....+..+++.|...|.|..... -..-|+ ....+.++|..-.
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~~~~~~v~ 371 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLAVDKNIIV 371 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEESSCSHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeCCCHHHHH
Confidence 44566788999999999999965310 012332 2455667775443
No 161
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.06 Score=56.51 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=38.9
Q ss_pred CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
..+-+++.||+|||||+.+ +.+|.+.+..+ +.+...+..+. .++..+..++.+..
T Consensus 205 ~prGiLL~GPPGtGKT~la----------------kAiA~~~~~~~-----~~v~~~~l~~~----~~Ge~e~~ir~lF~ 259 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV----------------KAVANSTKAAF-----IRVNGSEFVHK----YLGEGPRMVRDVFR 259 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH----------------HHHHHHHTCEE-----EEEEGGGTCCS----SCSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHH----------------HHHHHHhCCCe-----EEEecchhhcc----ccchhHHHHHHHHH
Confidence 3456999999999999443 55667776543 22322222111 12223333444332
Q ss_pred CCCCCCCCceEeeccc
Q 037717 159 EPSLESYSVLIVDEAQ 174 (582)
Q Consensus 159 ~~~l~~~~~vViDE~H 174 (582)
...-..-.+|++||+|
T Consensus 260 ~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 260 LARENAPSIIFIDEVD 275 (428)
T ss_dssp HHHHTCSEEEEEECTH
T ss_pred HHHHcCCCeeechhhh
Confidence 2112233789999999
No 162
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.059 Score=56.30 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
.+-+++.||+|+|||+. |+.+|.+.+..+ +.+...+..+. .++-.+.+++.+...
T Consensus 216 prGvLLyGPPGTGKTlL----------------AkAiA~e~~~~f-----i~v~~s~l~sk----~vGesek~ir~lF~~ 270 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL----------------AKAVANQTSATF-----LRIVGSELIQK----YLGDGPRLCRQIFKV 270 (437)
T ss_dssp CSEEEEESSTTTTHHHH----------------HHHHHHHHTCEE-----EEEESGGGCCS----SSSHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHH----------------HHHHHHHhCCCE-----EEEEHHHhhhc----cCchHHHHHHHHHHH
Confidence 46799999999999944 366677776543 22222222111 112234444444322
Q ss_pred CCCCCCCceEeeccc
Q 037717 160 PSLESYSVLIVDEAQ 174 (582)
Q Consensus 160 ~~l~~~~~vViDE~H 174 (582)
..-..-.+|+|||++
T Consensus 271 Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 271 AGENAPSIVFIDEID 285 (437)
T ss_dssp HHHTCSEEEEEEEES
T ss_pred HHhcCCcEEEEehhh
Confidence 112233789999999
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.16 E-value=0.041 Score=58.64 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+++
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 55899999999999664
No 164
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.13 E-value=0.047 Score=60.40 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=36.9
Q ss_pred hHHHHHHH----HHHhCCCeEEEECCCCCchh--chHhhhhc-----------cchHHHHHHHHHHHH
Q 037717 67 YPFWEELL----QAVSGYPVLAIVGETGSGKT--TQIPQYLY-----------EPRWVAAMSVAARVS 117 (582)
Q Consensus 67 ~~~~~~il----~~i~~~~~viv~a~TGSGKT--t~ip~~ll-----------~P~r~~a~~~a~~va 117 (582)
++.|.+++ +++.+++++++.||||+||| +++|.... -|++.++.++.+.+.
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHH
Confidence 45555554 56788999999999999999 45554322 199999888865443
No 165
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.053 Score=57.04 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
.+-+++.||+|||||+.+ +.+|.+.+..+ +.+...+..+. .++-...+++.+...
T Consensus 215 prGvLL~GPPGtGKTllA----------------kAiA~e~~~~~-----~~v~~s~l~sk----~~Gese~~ir~~F~~ 269 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA----------------KAVAATIGANF-----IFSPASGIVDK----YIGESARIIREMFAY 269 (437)
T ss_dssp CCEEEEESCTTSSHHHHH----------------HHHHHHHTCEE-----EEEEGGGTCCS----SSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH----------------HHHHHHhCCCE-----EEEehhhhccc----cchHHHHHHHHHHHH
Confidence 467999999999999543 56677776543 22222222111 111223344444322
Q ss_pred CCCCCCCceEeeccc
Q 037717 160 PSLESYSVLIVDEAQ 174 (582)
Q Consensus 160 ~~l~~~~~vViDE~H 174 (582)
..-..-.+|+|||++
T Consensus 270 A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 270 AKEHEPCIIFMDEVD 284 (437)
T ss_dssp HHHSCSEEEEEECCC
T ss_pred HHhcCCceeeeeccc
Confidence 222334789999999
No 166
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.11 E-value=0.055 Score=53.83 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.7
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..+++.||+|+|||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999654
No 167
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.07 E-value=0.2 Score=56.65 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.8
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.||||+|||+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999543
No 168
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.92 E-value=0.12 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=17.6
Q ss_pred CCCeEEEECCCCCchhchHhhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.++++.++|++|+||||.+-.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668888999999999876543
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.87 E-value=0.18 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 71 EELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 71 ~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
+.+-.++..+..+++.||+||||||++
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHH
Confidence 456677788999999999999999776
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.70 E-value=0.027 Score=51.62 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.++++||+||||||++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999876
No 171
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.69 E-value=0.074 Score=58.88 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----c--------chHHHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----E--------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----~--------P~r~~a~~~a~~va~ 118 (582)
+...|.+++..+..+..++|.||+|+|||+.+-..+. . |+..++..+..++..
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4677888888888889999999999999976543321 1 888999888888754
No 172
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.083 Score=60.14 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhcc-------------chHHHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLYE-------------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll~-------------P~r~~a~~~a~~va~ 118 (582)
+...|.+++..+..+..++|.||+|||||+.+-..+.. |+..+|..+..++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 35788899999888899999999999999665443221 899999999998875
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.34 E-value=0.32 Score=48.82 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.3
Q ss_pred CeEEEECCCCCchhchHhhh
Q 037717 81 PVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ 100 (582)
++++|.||.|+|||+++-.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 68999999999999877554
No 174
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.29 E-value=0.077 Score=56.83 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.||+|+|||+.+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 4467999999999999554
No 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.28 E-value=0.033 Score=51.79 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.++.++||+||||||++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHH
Confidence 346889999999999999886
No 176
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.22 E-value=0.061 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=17.5
Q ss_pred CCCeEEEECCCCCchhchHhhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.++..+++|+-||||||.+-+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~ 48 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRR 48 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 4567889999999999876443
No 177
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.21 E-value=0.12 Score=48.10 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=36.4
Q ss_pred HhCCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCC-CCccEEEEChHHHHHH
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS-DKTVLKYMTDCMLLRE 155 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~-~~t~I~~~T~g~Ll~~ 155 (582)
+..+..++++||+||||||++ +.+++......+..+++..|-..... .+.+..+.++..+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~----------------~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI----------------KKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH----------------HHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH----------------HHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 346778999999999999876 44454443212223333333221111 1235667777766555
Q ss_pred HH
Q 037717 156 IV 157 (582)
Q Consensus 156 l~ 157 (582)
+.
T Consensus 73 ~~ 74 (204)
T 2qor_A 73 LK 74 (204)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 178
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.19 E-value=0.33 Score=48.44 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.5
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..+++.||||+|||+.+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999554
No 179
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.04 E-value=0.03 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..+..+.|+|||||||||.+-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 6788899999999999998873
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.01 E-value=0.14 Score=51.92 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=18.9
Q ss_pred hCCCeEEEECCCCCchhchHhhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
..+.++.++||+||||||.+-.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~L 149 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKL 149 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35679999999999999887543
No 181
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.96 E-value=0.06 Score=59.47 Aligned_cols=101 Identities=24% Similarity=0.312 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhC--CCeEEEECCCCCchhchHhhhhcc---------chHHHHHHHHHHHHHHhCCccCcEEeEEEeec
Q 037717 67 YPFWEELLQAVSG--YPVLAIVGETGSGKTTQIPQYLYE---------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFE 135 (582)
Q Consensus 67 ~~~~~~il~~i~~--~~~viv~a~TGSGKTt~ip~~ll~---------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~ 135 (582)
...|.++++.+.. ..+.+++|+-|.|||+.+-.++.. |+..++..+.+...
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~------------------ 238 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAG------------------ 238 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHG------------------
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhh------------------
Confidence 3467788887776 567899999999999765333211 33332222211110
Q ss_pred ccCCCCccEEEEChHHHHHHHHcCCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccC
Q 037717 136 DCTSDKTVLKYMTDCMLLREIVIEPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 136 ~~~~~~t~I~~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
..+-|+.|.-++. .+.+.++||||||= .+... +++.++. ....|+||-|+
T Consensus 239 ------~~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~p----ll~~ll~---~~~~v~~~tTv 288 (671)
T 2zpa_A 239 ------EKFRFIAPDALLA------SDEQADWLVVDEAA--AIPAP----LLHQLVS---RFPRTLLTTTV 288 (671)
T ss_dssp ------GGCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHH----HHHHHHT---TSSEEEEEEEB
T ss_pred ------CCeEEeCchhhhh------CcccCCEEEEEchh--cCCHH----HHHHHHh---hCCeEEEEecC
Confidence 1255667765432 24468999999994 44433 4444443 23457788888
No 182
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=92.88 E-value=0.61 Score=46.74 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCccccc----
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAETSLT---- 333 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae~gid---- 333 (582)
.+.+||||....+..+.+.+.+.. .++....+-|+...++++ . .+....|-+.|....-|++
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccc
Confidence 467899999999988888877765 577888888885443322 1 2345566666765555675
Q ss_pred -cCCeeEEEeCCcccceeecCCCCcccccccccCHHhHHHHhcCCCCC-----CCCeEEEeeChhhhhhhhh
Q 037717 334 -IDGIKYVIHPGFAKVKSYNPKTGMESLLVNPISKASANQRTGLSERT-----GPGKCFRLYTLHNYHRIWM 399 (582)
Q Consensus 334 -Ip~v~~VID~g~~k~~~yd~~~~~~~l~~~~~S~~~~~QR~GRaGR~-----~~G~~~~L~~~~~~~~~~~ 399 (582)
.-+.+.|| .||+..+... ...|.+-|+-|. .+-..|||.+....++.+.
T Consensus 190 nl~~aD~VI--------~~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 190 SKARFDMLI--------CLDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp CCSCCSEEE--------ECSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTSHHHHHH
T ss_pred cCCCCCEEE--------EECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHH
Confidence 56677888 7777655322 234544444333 3567999999988877544
No 183
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.81 E-value=0.042 Score=56.51 Aligned_cols=25 Identities=48% Similarity=0.606 Sum_probs=21.4
Q ss_pred HHHhCCCeEEEECCCCCchhchHhh
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
-.+..+++++|+|||||||||++-.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHH
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHH
Confidence 4567899999999999999988743
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.81 E-value=0.062 Score=58.45 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=16.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.++++.||+|+||||++
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999665
No 185
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.77 E-value=0.26 Score=45.44 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=40.8
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeeccc-CCCCccEEEEChHHHHHHHHcC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC-TSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~-~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
+-+||+||.||||||++ +++.++....++..+.|..|--.. ..++-+-.|.|.+-+.+++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~----------------~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g 65 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL----------------KKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNN 65 (186)
T ss_dssp CCEEEECCTTSSHHHHH----------------HHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHH----------------HHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcC
Confidence 45899999999999776 455555443344444454442211 1124578889998888877665
Q ss_pred C
Q 037717 160 P 160 (582)
Q Consensus 160 ~ 160 (582)
.
T Consensus 66 ~ 66 (186)
T 1ex7_A 66 E 66 (186)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.74 E-value=0.12 Score=58.76 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhhhc-----c--------chHHHHHHHHHHHHH
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQYLY-----E--------PRWVAAMSVAARVSQ 118 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ll-----~--------P~r~~a~~~a~~va~ 118 (582)
+...|.+++..+..+.+++|.||+|+|||+.+-..+. . |+..+|..+..++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3567888888888889999999999999976543321 1 888899888888754
No 187
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.68 E-value=0.029 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.0
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+..+.++||+||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678899999999999998854
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.66 E-value=0.046 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHhCCCeEEEECCCCCchhchH
Q 037717 76 AVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++.+.||+||||||++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 6889999999999999999887
No 189
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.57 E-value=0.047 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+..++++||+||||||++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 456889999999999999876
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.50 E-value=0.064 Score=57.78 Aligned_cols=26 Identities=42% Similarity=0.459 Sum_probs=21.7
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHh
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip 98 (582)
+--.+..+.+++|+|||||||||.+-
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHH
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 44557889999999999999998873
No 191
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.40 E-value=0.027 Score=63.78 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcC
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIE 159 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~ 159 (582)
.+-+++.||+|+|||+++ +.+|.+.+..+ +.+...+..+. .+...+..++.+...
T Consensus 238 p~GILL~GPPGTGKT~LA----------------raiA~elg~~~-----~~v~~~~l~sk----~~gese~~lr~lF~~ 292 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA----------------RAVANETGAFF-----FLINGPEIMSK----LAGESESNLRKAFEE 292 (806)
T ss_dssp CCEEEEECCTTSCHHHHH----------------HHHHTTTTCEE-----EEEEHHHHHSS----CTTHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH----------------HHHHHHhCCeE-----EEEEhHHhhcc----cchHHHHHHHHHHHH
Confidence 356999999999999554 55666665432 22221111111 011123344444433
Q ss_pred CCCCCCCceEeeccc
Q 037717 160 PSLESYSVLIVDEAQ 174 (582)
Q Consensus 160 ~~l~~~~~vViDE~H 174 (582)
..-..-++|+|||+|
T Consensus 293 A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 293 AEKNAPAIIFIDELD 307 (806)
T ss_dssp HTTSCSEEEEEESGG
T ss_pred HHHcCCeEEEEehhc
Confidence 333445899999999
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.34 E-value=0.061 Score=50.49 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.6
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..++++||+||||||++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35788999999999999876
No 193
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.28 E-value=0.053 Score=50.53 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=15.9
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.++++||+||||||++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999887
No 194
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.20 E-value=0.23 Score=46.82 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.8
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+.+.+++|+-||||||.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~L 45 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEEL 45 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 45788999999999999865
No 195
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=92.07 E-value=0.8 Score=46.16 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=61.6
Q ss_pred CCCcCCC--ccchhchhhhcCCCChHHHHHHHhccccc-ChHHHHHHHHhhccCCCccccChhhHHHHHHHhh-hcc---
Q 037717 446 GALNKAG--QLTRVGRQMAEFPIDPKLSKTIVSLDKYK-CSDEIITIAAMLFVGNSIFYRPKDKQIYADNARM-NFH--- 518 (582)
Q Consensus 446 gal~~~~--~lT~lG~~~a~lpl~p~~~k~l~~~~~~~-c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~-~f~--- 518 (582)
|+++++| ..|++|+++|.++|++..++.+.....-. ...+++.+.|.-.....+.+++.+.....+..+. .+.
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~ 80 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPE 80 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCT
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccc
Confidence 5676666 57999999999999999999999776543 5667888888877766777777665544433322 111
Q ss_pred C-CCCCcHHHHHHHHHHHHHc
Q 037717 519 L-GDVGDRIALLRVYNCWREC 538 (582)
Q Consensus 519 ~-~~~sD~~~~l~~~~~~~~~ 538 (582)
. ...+.|.-..-+.++|...
T Consensus 81 ~~~~~~~~~K~~lLLqa~isr 101 (328)
T 3im1_A 81 HTSSGSVSFKVFLLLQAYFSR 101 (328)
T ss_dssp TSCSSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHCC
Confidence 1 1124466666667888764
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.05 E-value=0.062 Score=50.92 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=17.8
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++.+.|+||+||||||++
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 567899999999999999887
No 197
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.99 E-value=0.11 Score=55.85 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.5
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+-+++.||+|+|||+++
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34899999999999665
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.89 E-value=0.076 Score=49.59 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=17.2
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.++.++++||+||||||++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6788999999999999876
No 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.84 E-value=0.041 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.5
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.+++++||.||||||++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 557789999999999999876
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.83 E-value=0.11 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=20.1
Q ss_pred HHHHHHH--hCCCeEEEECCCCCchhchH
Q 037717 71 EELLQAV--SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 71 ~~il~~i--~~~~~viv~a~TGSGKTt~i 97 (582)
..++..+ ..+..++|+|||||||||.+
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3444433 35678999999999999887
No 201
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.68 E-value=0.67 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.6
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.++..+++|+-||||||.+-+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~ 38 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMR 38 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHH
Confidence 477899999999999977644
No 202
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.60 E-value=0.053 Score=51.69 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=14.6
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.++.++||+||||||++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 356889999999999999987
No 203
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.45 E-value=0.077 Score=48.75 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+++++++||+||||||++
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999877
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.38 E-value=0.076 Score=54.45 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.1
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
...+..++|+|||||||||.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHH
Confidence 346678999999999999887
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.30 E-value=0.072 Score=60.79 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.9
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..++.++++||+||||||++
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 45678999999999999765
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.24 E-value=0.086 Score=50.09 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=17.8
Q ss_pred HHhCCCeEEEECCCCCchhchH
Q 037717 76 AVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~i 97 (582)
.+..++.++|+||.||||||++
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3567899999999999999887
No 207
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.20 E-value=0.41 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=18.0
Q ss_pred CCCeEEEECCCCCchhchHhhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+.++.++|++||||||.+-.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~L 313 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKL 313 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHH
Confidence 3568999999999999887543
No 208
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.04 E-value=0.068 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.7
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+..++|+|||||||||.+-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 56788999999999999988733
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.84 E-value=0.11 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=17.2
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+++++++|++||||||+.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHH
Confidence 346788999999999999876
No 210
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.79 E-value=0.2 Score=45.14 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=19.0
Q ss_pred HHHHHHh--CCCeEEEECCCCCchhchH
Q 037717 72 ELLQAVS--GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 72 ~il~~i~--~~~~viv~a~TGSGKTt~i 97 (582)
++.+.+. ....++++||+|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444444 3468999999999999765
No 211
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.77 E-value=0.073 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.5
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.|+||.||||||++-.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~ 50 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNI 50 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 35788999999999999988743
No 212
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.73 E-value=0.65 Score=46.66 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.++++.++|++|+||||.+-.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456799999999999987644
No 213
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.72 E-value=0.13 Score=47.82 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.6
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.++..++.||.||||||.+-+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~ 39 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMR 39 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHH
Confidence 467899999999999977654
No 214
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.65 E-value=0.44 Score=47.36 Aligned_cols=110 Identities=25% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCeEEEECCCCCchhchHhhhhcc--------------chHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEE
Q 037717 80 YPVLAIVGETGSGKTTQIPQYLYE--------------PRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 145 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ll~--------------P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~ 145 (582)
+.+++++|++|+||||.+-.+... ++|.++.......+...+..+- .. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~-------~~--~~~------ 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY-------GE--PGE------ 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE-------CC--TTC------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE-------ec--CCC------
Confidence 457888999999999876544211 5555444333333333332210 00 000
Q ss_pred EEChHHHHHHHHcCCCCCCCCceEeecccCCCc--chhHHHHHHHHHH-hhCCCceEEEecccC
Q 037717 146 YMTDCMLLREIVIEPSLESYSVLIVDEAQERTL--STDNLFGLLKDLI-NYRPDLKLLISSATL 206 (582)
Q Consensus 146 ~~T~g~Ll~~l~~~~~l~~~~~vViDE~HeR~~--~~d~ll~~lk~~~-~~~~~~kii~~SAT~ 206 (582)
..|..++........-.+|++||||-+- |.. ..+.++..++.+. ...++--++.+.|+.
T Consensus 163 -~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 -KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333222211112578999999986 332 3333444333321 134566666666654
No 215
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.48 E-value=0.11 Score=46.40 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=15.3
Q ss_pred CeEEEECCCCCchhchHh
Q 037717 81 PVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip 98 (582)
.+++++|++||||||+.-
T Consensus 2 ~~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAK 19 (179)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368899999999998763
No 216
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.38 E-value=0.17 Score=45.26 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=15.4
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
++++++|+.||||||+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 78999999999999765
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.34 E-value=0.72 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=17.4
Q ss_pred CCCeEEEECCCCCchhchHhhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+++++++|++||||||.+-.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567888999999999876543
No 218
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.26 E-value=0.097 Score=48.98 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=17.3
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..+.|+||+||||||++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35678999999999999876
No 219
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.18 E-value=0.12 Score=47.90 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.2
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+.+++++|+.||||||++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45789999999999999876
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.15 E-value=0.74 Score=52.01 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.8
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.||||+|||+.+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999553
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.14 E-value=0.098 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHhCCCeEEEECCCCCchhchHhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+..++++.+.||+||||||++-.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 567899999999999999988744
No 222
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.09 E-value=0.1 Score=52.19 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=14.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..+++|+||||||||++.
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 457899999999999553
No 223
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.05 E-value=0.11 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.1
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+...+++++.||+||||+||.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH
Confidence 456678999999999999987
No 224
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.88 E-value=0.12 Score=46.40 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+.+++++|+.||||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999876
No 225
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.88 E-value=0.17 Score=45.49 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+.+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999665
No 226
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.86 E-value=0.097 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.1
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++.+.|+||.||||||++-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 227
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.70 E-value=0.15 Score=46.41 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+..++++|+.||||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 568999999999999876
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.66 E-value=0.48 Score=54.35 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.1
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.++++++||+|+|||+.+
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 457899999999999664
No 229
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.57 E-value=0.14 Score=46.14 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+..++++|+.||||||..
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467999999999999665
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.53 E-value=0.13 Score=52.17 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
..++++|+||||||||++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3458999999999999553
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.47 E-value=0.16 Score=46.21 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.++++|++||||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999765
No 232
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.46 E-value=0.11 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.|.||.||||||++-.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~ 53 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQN 53 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999988743
No 233
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.38 E-value=0.1 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.+.||.||||||++-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.36 E-value=0.24 Score=56.08 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=49.8
Q ss_pred CeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHcCC
Q 037717 81 PVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVIEP 160 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~~~ 160 (582)
+-+++.||+|+|||.. |+.+|.+.+..+ +.+...+..+. .++..+..++.+....
T Consensus 512 ~gvLl~GPPGtGKT~l----------------AkaiA~e~~~~f-----~~v~~~~l~s~----~vGese~~vr~lF~~A 566 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLL----------------AKAIANECQANF-----ISIKGPELLTM----WFGESEANVREIFDKA 566 (806)
T ss_dssp SCCEEESSTTSSHHHH----------------HHHHHHTTTCEE-----EECCHHHHHTT----TCSSCHHHHHHHHHHH
T ss_pred ceEEEecCCCCCchHH----------------HHHHHHHhCCce-----EEeccchhhcc----ccchHHHHHHHHHHHH
Confidence 4589999999999944 355666665432 11111111110 1223344555554322
Q ss_pred CCCCCCceEeeccc----CCCcc-------hh-HHHHHHHHHHhhCCCceEEEecccC
Q 037717 161 SLESYSVLIVDEAQ----ERTLS-------TD-NLFGLLKDLINYRPDLKLLISSATL 206 (582)
Q Consensus 161 ~l~~~~~vViDE~H----eR~~~-------~d-~ll~~lk~~~~~~~~~kii~~SAT~ 206 (582)
.-..-++|+|||++ .|+.. .+ ++-.+|..+-.....-.++++-||-
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN 624 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp HTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-C
T ss_pred HHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC
Confidence 22234799999999 34321 11 2223333333334445678888885
No 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.32 E-value=0.14 Score=46.16 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.8
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|++||||||+.
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 36889999999999875
No 236
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.24 E-value=0.31 Score=51.20 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=15.9
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
.+++++|++|+||||.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4789999999999987643
No 237
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.24 E-value=0.13 Score=46.31 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.3
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.+++++|+.||||||++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3568999999999999876
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.14 E-value=0.25 Score=44.25 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.5
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..++++.+.||.||||||++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 68889999999999999887
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.11 E-value=0.17 Score=45.27 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++|+.||||||+.
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999776
No 240
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.08 E-value=0.11 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.+.||.||||||++-
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 241
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.98 E-value=0.16 Score=49.24 Aligned_cols=16 Identities=44% Similarity=0.436 Sum_probs=14.0
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
+++|+|||||||||+.
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999764
No 242
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.97 E-value=0.12 Score=49.29 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.1
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++.+.|.||.||||||++-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.93 E-value=0.1 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=20.7
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+..++++.|.||+||||||++-++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999999887443
No 244
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.91 E-value=0.14 Score=51.17 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.3
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++|+||||||||++.
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 47889999999999553
No 245
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.89 E-value=0.13 Score=50.31 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.|.||.||||||++-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 246
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.85 E-value=0.12 Score=50.21 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=18.8
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++++.+.||.||||||++
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHH
Confidence 457889999999999999887
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.84 E-value=0.13 Score=47.89 Aligned_cols=20 Identities=45% Similarity=0.444 Sum_probs=16.7
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+.++.|+||+||||||++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHH
Confidence 35668899999999999876
No 248
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.83 E-value=0.13 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.||.||||||++-.+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Confidence 457899999999999999987443
No 249
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.83 E-value=0.13 Score=49.88 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=19.5
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.|.||.||||||++-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35788999999999999988743
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.80 E-value=0.21 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=18.4
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
......++++|+.||||||+.-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHH
Confidence 4566789999999999998763
No 251
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.70 E-value=0.13 Score=50.15 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=18.8
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++.+.|.||.||||||++
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999887
No 252
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.70 E-value=0.13 Score=47.20 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=15.2
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.+++++||.||||||++
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 56889999999999887
No 253
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.61 E-value=0.12 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.4
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.|.||.||||||++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999988733
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.60 E-value=0.13 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.+.||.||||||++-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 255
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.53 E-value=0.18 Score=46.98 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++||||||||+++
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999999654
No 256
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.44 E-value=0.14 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.1
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.|.||.||||||++-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 3578899999999999998873
No 257
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.40 E-value=0.14 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.2
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.+.||.||||||++-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHH
Confidence 4578999999999999998873
No 258
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.29 E-value=0.16 Score=47.03 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=18.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
...+.+++++|+.||||||++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 356789999999999999775
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.25 E-value=0.15 Score=49.97 Aligned_cols=21 Identities=48% Similarity=0.515 Sum_probs=18.8
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++++.|.||.||||||++
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999887
No 260
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.24 E-value=0.16 Score=46.14 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCCchhchHh
Q 037717 79 GYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip 98 (582)
.+..++++|+.||||||+.-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35578999999999998863
No 261
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.21 E-value=0.17 Score=47.28 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
-+..+..+++.|++||||||.+-++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHH
Confidence 3557889999999999999877543
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.18 E-value=0.16 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.5
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+..+.++++.||+||||||.+-++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHH
Confidence 3557889999999999999887443
No 263
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.18 E-value=0.15 Score=49.47 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.7
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++++.|.||.||||||++
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457889999999999999887
No 264
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.10 E-value=0.25 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHhCCCeEEEECCCCCchhchHh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip 98 (582)
.+.....++++|++||||||+.-
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHH
Confidence 34456789999999999998763
No 265
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.05 E-value=0.2 Score=46.98 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=15.9
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
++++.||+||||+||...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999987544
No 266
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.98 E-value=0.18 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++.+.|+||+||||||++
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 468899999999999999887
No 267
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.96 E-value=0.16 Score=49.94 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=19.7
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.|.||.||||||++-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999988743
No 268
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.91 E-value=0.24 Score=45.63 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++|+.||||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4678999999999999886
No 269
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.89 E-value=0.22 Score=45.05 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=16.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
..++++++|++||||||+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4678999999999999776
No 270
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.88 E-value=0.16 Score=49.72 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.+.||.||||||++-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 4578899999999999998873
No 271
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.88 E-value=0.14 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.8
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.|+||+||||||++-.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHH
Confidence 45789999999999999988744
No 272
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.85 E-value=0.21 Score=47.22 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
....++++|++||||||+.-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 456799999999999988743
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.84 E-value=0.16 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.2
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.|.||.||||||++-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 4578999999999999998873
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.73 E-value=0.16 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.5
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.+.||.||||||++-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~ 50 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDL 50 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 35788999999999999988743
No 275
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.71 E-value=0.17 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++.+.+.||.||||||++-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999998873
No 276
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.71 E-value=0.59 Score=53.61 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.4
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..+++.||||+|||+.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37899999999999554
No 277
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.64 E-value=0.19 Score=46.50 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=15.2
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.+++++|+.||||||++
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999875
No 278
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.53 E-value=0.23 Score=46.78 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=15.7
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..++.++|++||||||++
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999876
No 279
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.30 E-value=0.17 Score=50.51 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=18.8
Q ss_pred hCCCeEEEECCCCCchhchHhhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
..+.++.++||+||||||.+-.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~L 120 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKL 120 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 35678999999999999887543
No 280
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.30 E-value=0.21 Score=45.56 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++|+.||||||+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467899999999999875
No 281
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.15 E-value=0.22 Score=45.06 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.+++++|+.||||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678899999999999876
No 282
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.15 E-value=0.25 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.7
Q ss_pred CCeEEEECCCCCchhchHhhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ 100 (582)
...++|+||.||||||++-.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 478999999999999987443
No 283
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.06 E-value=0.29 Score=44.68 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.3
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++|+.||||||+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999765
No 284
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.04 E-value=0.35 Score=47.80 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...++++|+.||||||++
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999775
No 285
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.95 E-value=1.8 Score=46.20 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=16.5
Q ss_pred CeEEEECCCCCchhchHhhh
Q 037717 81 PVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ 100 (582)
.+++++|++|+||||.+-.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kL 121 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKL 121 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 37888999999999887554
No 286
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.76 E-value=0.26 Score=49.23 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=17.8
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+.++.++||+||||||.+-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~ 121 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAK 121 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 467899999999999988743
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.71 E-value=0.2 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.9
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..+.+++|.||+||||||.+-++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999876443
No 288
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.70 E-value=0.24 Score=50.22 Aligned_cols=17 Identities=47% Similarity=0.558 Sum_probs=14.5
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.+++|+|||||||||+.
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 47899999999999654
No 289
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.68 E-value=0.22 Score=47.22 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
-+..+.++.+.||+||||||.+-++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHH
Confidence 3457899999999999999876443
No 290
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.63 E-value=0.26 Score=44.88 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...++++|++||||||+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457899999999999876
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.53 E-value=0.26 Score=44.80 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++|+.||||||+.
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999876
No 292
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.47 E-value=0.049 Score=62.14 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..+++.||+|+|||+++
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 4567899999999999654
No 293
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.46 E-value=0.28 Score=45.43 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.2
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++|+.||||||++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3567899999999999876
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.46 E-value=0.3 Score=44.85 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.|+.||||||++
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5789999999999876
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.43 E-value=0.43 Score=47.98 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=14.8
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
++.|.||+||||||.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999876
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.42 E-value=0.26 Score=49.63 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.4
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++|+|||||||||+.
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999999654
No 297
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.39 E-value=0.24 Score=47.10 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=18.2
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+..+.+.|+.||||||++-.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHH
Confidence 3567899999999999998733
No 298
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.28 E-value=0.29 Score=44.29 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=15.9
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
...+|+||+||||||++-.
T Consensus 27 g~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp SEEEEEECTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3789999999999987743
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.28 E-value=0.33 Score=44.03 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=15.9
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
.++.++|+.||||||++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~ 23 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK 23 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4788999999999987643
No 300
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.25 E-value=0.24 Score=47.57 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.7
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.++.|.||.||||||++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 456778999999999999876
No 301
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.23 E-value=0.23 Score=49.10 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=22.3
Q ss_pred HHHHHHhCCCeEEEECCCCCchhchHhh
Q 037717 72 ELLQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 72 ~il~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+.-.+..++.++|.|++||||||++-+
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHH
Confidence 3444567899999999999999988644
No 302
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.21 E-value=0.28 Score=47.12 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
....++++|+.||||||+.-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 445799999999999988733
No 303
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.21 E-value=0.21 Score=46.44 Aligned_cols=22 Identities=41% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHhCCCeEEEECCCCCchhchH
Q 037717 76 AVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~i 97 (582)
.+..+..+.|+|++||||||++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 3455678999999999999876
No 304
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.18 E-value=0.29 Score=43.25 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.9
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
...+|+||+|||||+.+-.
T Consensus 24 g~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4789999999999987643
No 305
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.18 E-value=0.96 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=18.5
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+++++|+||.||||||.+-+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ 681 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQ 681 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 468899999999999998854
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.11 E-value=0.26 Score=44.87 Aligned_cols=19 Identities=42% Similarity=0.378 Sum_probs=16.5
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.+++++|+.||||||++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4568999999999999876
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.08 E-value=0.32 Score=44.89 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.5
Q ss_pred CCeEEEECCCCCchhchHhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~ 99 (582)
++.+.++||+||||||.+-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 45688999999999998743
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.05 E-value=0.35 Score=45.38 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=15.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+..+++.|+.||||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999876
No 309
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.02 E-value=0.18 Score=45.80 Aligned_cols=19 Identities=53% Similarity=0.744 Sum_probs=15.7
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
+.+.|+|++||||||++-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp CEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678999999999988743
No 310
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.98 E-value=0.31 Score=45.53 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=14.9
Q ss_pred eEEEECCCCCchhchHhh
Q 037717 82 VLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~ 99 (582)
.++++|+.||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999988633
No 311
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.95 E-value=0.38 Score=44.58 Aligned_cols=19 Identities=53% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.++.|+|+.||||||++
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3468999999999999876
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.95 E-value=0.34 Score=44.08 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=16.3
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
..++++|+.||||||++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 5789999999999988743
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.89 E-value=0.23 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.2
Q ss_pred hCCCeEEEECCCCCchhchHh
Q 037717 78 SGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip 98 (582)
.. +++.+.||.||||||++-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHH
Confidence 45 789999999999998873
No 314
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.86 E-value=0.26 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.7
Q ss_pred HHhCCCeEEEECCCCCchhchH
Q 037717 76 AVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~i 97 (582)
.+..+.+++++|+.||||||++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHH
Confidence 3566788999999999999876
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.78 E-value=0.22 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.6
Q ss_pred hCCCeEEEECCCCCchhchHh
Q 037717 78 SGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip 98 (582)
..++.+.+.||.||||||++-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 578899999999999998873
No 316
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.78 E-value=0.22 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.4
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+.++.+.||.||||||++-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRC 49 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHH
Confidence 35788999999999999988743
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.71 E-value=0.29 Score=44.28 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=11.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...++++|+.||||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999875
No 318
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.64 E-value=0.33 Score=44.37 Aligned_cols=16 Identities=50% Similarity=0.746 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.|+.||||||++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999886
No 319
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.59 E-value=0.3 Score=45.98 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=15.7
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.|+.||||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999886
No 320
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.56 E-value=0.25 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=19.9
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++++.+.||.||||||++-.+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred ECCCCEEEEEcCCCchHHHHHHHH
Confidence 357889999999999999987443
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.55 E-value=0.24 Score=49.74 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.4
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.++.|.||+||||||++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 456778999999999999887
No 322
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.53 E-value=0.25 Score=47.05 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.4
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..+..++|.|++|+|||+.+-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 456889999999999999765443
No 323
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.44 E-value=0.25 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.+.||.||||||++-.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~ 60 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRL 60 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHH
Confidence 45789999999999999988744
No 324
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.43 E-value=0.34 Score=45.27 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.0
Q ss_pred eEEEECCCCCchhchHhh
Q 037717 82 VLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~ 99 (582)
.++++|+.||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999988743
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=85.41 E-value=2.1 Score=44.86 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.2
Q ss_pred CeEEEECCCCCchhchHhhh
Q 037717 81 PVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~ 100 (582)
.+++++|++|+||||.+-.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~L 120 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKL 120 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47888999999999876443
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.28 E-value=0.35 Score=43.17 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.8
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|+.||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999775
No 327
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.21 E-value=0.5 Score=46.53 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=15.8
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.||+|+|||+.+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999654
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.16 E-value=0.37 Score=44.71 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.7
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..++++|+.||||||+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999876
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.16 E-value=0.42 Score=44.09 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.1
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|+.||||||+.
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999876
No 330
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.15 E-value=0.37 Score=46.58 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.3
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+.++.|.||.||||||++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35678999999999999876
No 331
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.03 E-value=0.27 Score=48.21 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.1
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
-+..+++++|.||+||||||++-++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHH
Confidence 4678899999999999999887543
No 332
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.99 E-value=0.28 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=19.9
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++++.+.||.||||||++-.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLML 49 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHH
Confidence 357889999999999999987443
No 333
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.98 E-value=0.27 Score=48.01 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=17.8
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+. ++.+.+.||.||||||++
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHH
Confidence 45 788999999999999887
No 334
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.98 E-value=0.19 Score=46.77 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=14.6
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++|+.||||||++
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999887
No 335
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.96 E-value=0.41 Score=48.04 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 70 WEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 70 ~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
...+..++..+..+++.||+|+|||+.+
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3445566667888999999999999554
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.96 E-value=0.28 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.4
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.+.||.||||||++-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~ 48 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYT 48 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCchHHHHHHH
Confidence 35788999999999999987744
No 337
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.94 E-value=0.26 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=18.0
Q ss_pred CCCeEEEECCCCCchhchHhhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+.++.++||+||||||.+-.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~L 177 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKL 177 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHH
Confidence 3568999999999999887543
No 338
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.86 E-value=0.37 Score=44.70 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.2
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..++++|+.||||||++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35678999999999999876
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.83 E-value=0.35 Score=43.94 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=15.0
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|+.||||||+.
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999876
No 340
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.65 E-value=0.39 Score=44.31 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=14.9
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|+.||||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999876
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.60 E-value=0.29 Score=50.66 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.3
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.+++|+||||||||++.
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 46889999999999553
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.56 E-value=0.4 Score=43.61 Aligned_cols=16 Identities=56% Similarity=0.740 Sum_probs=14.2
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++|+.||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999876
No 343
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.49 E-value=0.44 Score=48.09 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.3
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+||||++
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999776
No 344
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.34 E-value=0.31 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.+.||.||||||++-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~ 56 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRM 56 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHH
Confidence 35788999999999999998744
No 345
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.30 E-value=0.4 Score=45.64 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..+++.|+.||||||++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5678999999999999887
No 346
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.21 E-value=0.93 Score=54.56 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=21.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
+..++.+.|+||+||||||++-.++
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHT
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhc
Confidence 3578999999999999999886554
No 347
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.20 E-value=0.31 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip 98 (582)
+..++++.+.||.||||||++-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLR 47 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHH
Confidence 3578899999999999998874
No 348
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.16 E-value=0.43 Score=45.09 Aligned_cols=16 Identities=50% Similarity=0.590 Sum_probs=14.3
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+++.|+.||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999886
No 349
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.12 E-value=0.25 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=19.8
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.||.||||||++-.+
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~i 46 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELI 46 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHHHHHH
Confidence 357889999999999999887443
No 350
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=84.08 E-value=1.3 Score=50.78 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.8
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+++++|+||.||||||.+-+
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~ 692 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQ 692 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHH
Confidence 3578999999999999998844
No 351
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=84.06 E-value=0.9 Score=50.52 Aligned_cols=55 Identities=25% Similarity=0.232 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh---hcc-------------chHHHHHHHHHHHHHHhCC
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY---LYE-------------PRWVAAMSVAARVSQEMGV 122 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~---ll~-------------P~r~~a~~~a~~va~~~~~ 122 (582)
+.+.|.+++.. .+..++|.|+.|||||+.+-.- ++. .++.+|..+..|+....+.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 45677777764 3567899999999999655432 111 5778888888888876553
No 352
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.04 E-value=0.29 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.8
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.+.||+||||||++-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~ 66 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSA 66 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHH
Confidence 46789999999999999988743
No 353
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.99 E-value=0.46 Score=42.24 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.6
Q ss_pred eEEEECCCCCchhchHh
Q 037717 82 VLAIVGETGSGKTTQIP 98 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip 98 (582)
.++++|+.||||||+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 354
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.94 E-value=0.33 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.7
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.|.||.||||||++-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHH
Confidence 45789999999999999988733
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.89 E-value=0.4 Score=43.13 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=14.1
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++|+.||||||+.
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999765
No 356
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.75 E-value=0.45 Score=43.09 Aligned_cols=17 Identities=47% Similarity=0.610 Sum_probs=14.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|+.||||||+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999765
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.69 E-value=0.41 Score=44.29 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=14.1
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
++.++|+.||||||+.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999775
No 358
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.69 E-value=3.7 Score=37.94 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCCceEeecc----cCCCcchhHHHHHHHHHHhhCCCceEEEecccCChHHHHhh
Q 037717 163 ESYSVLIVDEA----QERTLSTDNLFGLLKDLINYRPDLKLLISSATLDAEKFSDY 214 (582)
Q Consensus 163 ~~~~~vViDE~----HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (582)
..|++||+||+ +-+-+..+-++.++. .+|.-.-|++|.-..++.+-+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~----~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALN----ARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHH----TSCTTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHH----hCcCCCEEEEECCCCcHHHHHh
Confidence 67999999999 445566666666554 3455455555554444444443
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.64 E-value=0.41 Score=44.23 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=14.1
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.+.|+|+.||||||+.
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999775
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.62 E-value=0.42 Score=44.70 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=14.1
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
.++++|+.||||||+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999876
No 361
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=83.59 E-value=1.1 Score=50.82 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=63.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCC-ccccccCCe
Q 037717 259 TGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIA-ETSLTIDGI 337 (582)
Q Consensus 259 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~ia-e~gidIp~v 337 (582)
+.+++|.+|++.-++..++.+.+.+... ++.+..+||+++..+|..+.+...+|..+|||+|.-. ...+...++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 5789999999999999988888766432 4678899999999999888888888999999999732 234677788
Q ss_pred eEEE
Q 037717 338 KYVI 341 (582)
Q Consensus 338 ~~VI 341 (582)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8776
No 362
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.47 E-value=0.75 Score=46.86 Aligned_cols=19 Identities=42% Similarity=0.636 Sum_probs=15.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
....+++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999543
No 363
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.47 E-value=0.41 Score=46.43 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...++++|+.||||||++
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 457899999999999875
No 364
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.45 E-value=0.76 Score=45.91 Aligned_cols=29 Identities=24% Similarity=0.568 Sum_probs=22.2
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHhhhh
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
+.+.+..+++++|.||.|+|||+++-+++
T Consensus 24 L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 24 LEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 44444456899999999999998876553
No 365
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.39 E-value=0.54 Score=44.60 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.|++||||||+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999876
No 366
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.27 E-value=0.45 Score=48.78 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.7
Q ss_pred eEEEECCCCCchhchHhh
Q 037717 82 VLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~ 99 (582)
..+|+|||||||||++-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 678999999999988744
No 367
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.26 E-value=0.41 Score=44.78 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.4
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+.+++|+|+.||||||+.
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 347899999999999875
No 368
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=83.01 E-value=0.44 Score=47.20 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+.++.|+|++||||||++
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999876
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.59 E-value=0.56 Score=43.95 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=15.1
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..+++.|+.||||||+.
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999886
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.36 E-value=0.47 Score=45.57 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+||||||++
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999776
No 371
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.31 E-value=0.26 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.5
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++++.+.||.||||||++-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~ 50 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRI 50 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHH
Confidence 35788999999999999988743
No 372
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.26 E-value=0.75 Score=46.82 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHHHHcCCCcCCCc-cchhch-hhhcCCCChHH
Q 037717 428 DPPLEEALLKAFELLYALGALNKAGQ-LTRVGR-QMAEFPIDPKL 470 (582)
Q Consensus 428 ~~p~~~~i~~al~~L~~lgal~~~~~-lT~lG~-~~a~lpl~p~~ 470 (582)
+|.....+.+++..|...|.|..... -..-|+ .+-.|.++|..
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~ 360 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKEK 360 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCHHH
Confidence 45677889999999999999975321 002332 25567777754
No 373
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.18 E-value=0.76 Score=47.87 Aligned_cols=27 Identities=41% Similarity=0.482 Sum_probs=20.1
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHhh
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+-.......++.+.|++||||||++-.
T Consensus 62 L~~~~~~~~~valvG~nGaGKSTLln~ 88 (413)
T 1tq4_A 62 LKEIDSSVLNVAVTGETGSGKSSFINT 88 (413)
T ss_dssp HHHHHHCCEEEEEEECTTSSHHHHHHH
T ss_pred hhhcccCCeEEEEECCCCCcHHHHHHH
Confidence 333444555899999999999998743
No 374
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.01 E-value=0.42 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=19.7
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.++||+||||||++-.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~ 386 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINL 386 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTT
T ss_pred ECCCCEEEEECCCCChHHHHHHH
Confidence 45789999999999999988744
No 375
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.93 E-value=0.82 Score=48.91 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCeEEEECCCCCchhchH
Q 037717 70 WEELLQAVSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 70 ~~~il~~i~~~~~viv~a~TGSGKTt~i 97 (582)
...++.++..+..+++.||+|+|||+.+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3456667778889999999999999554
No 376
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=81.71 E-value=1.2 Score=50.17 Aligned_cols=54 Identities=26% Similarity=0.247 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh----hcc------------chHHHHHHHHHHHHHHhC
Q 037717 66 IYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY----LYE------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 66 i~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~----ll~------------P~r~~a~~~a~~va~~~~ 121 (582)
+.+.|.+++.. .+..++|.|..|||||+.+-.- +.+ .++.+|..+.+|+...++
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 56778887765 3456888999999999655432 211 677888888888887654
No 377
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.50 E-value=0.49 Score=46.29 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.2
Q ss_pred eEEEECCCCCchhchHhh
Q 037717 82 VLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~ 99 (582)
++.++||+||||||++-.
T Consensus 4 ~v~lvG~nGaGKSTLln~ 21 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNT 21 (270)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477899999999998844
No 378
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.40 E-value=0.47 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+.+++|.|+||||||+.+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~ 72 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRE 72 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHHH
Confidence 456799999999999976543
No 379
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.40 E-value=0.51 Score=48.43 Aligned_cols=19 Identities=42% Similarity=0.763 Sum_probs=16.2
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
...+++||||||||+.+-.
T Consensus 26 gl~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5789999999999988744
No 380
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=81.34 E-value=0.4 Score=44.24 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.3
Q ss_pred hCCCeEEEECCCCCchhchHhhhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
..+..++++|++|+||||++-.++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345679999999999999886554
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.30 E-value=0.81 Score=45.57 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.2
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+.++.|+|++||||||++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 45678999999999999876
No 382
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.26 E-value=0.59 Score=42.85 Aligned_cols=17 Identities=41% Similarity=0.687 Sum_probs=14.7
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.++.|+|++||||||+.
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999765
No 383
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.13 E-value=0.51 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.8
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.++||+||||||.+-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 46889999999999999988743
No 384
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.12 E-value=0.63 Score=43.82 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..+++.|+.|||||||+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678999999999999987
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.02 E-value=0.54 Score=45.50 Aligned_cols=18 Identities=44% Similarity=0.418 Sum_probs=16.7
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+++++++|+.||||||+.
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 889999999999999876
No 386
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=80.86 E-value=0.65 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.1
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
...+..+++.|+.||||||++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp -CCCCEEEEECCC---CHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHH
Confidence 356789999999999999987
No 387
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.82 E-value=0.49 Score=45.66 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...++++|++||||||+.
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999765
No 388
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.80 E-value=0.5 Score=47.31 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCeEEEECCCCCchhchHhhh
Q 037717 71 EELLQAVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 71 ~~il~~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+.++.-+..+..++|.|++|+|||+.+-++
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~i 88 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQ 88 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 344555678899999999999999776443
No 389
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=80.69 E-value=0.94 Score=45.01 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHhCCCeEEEECCCCCchhchHhh
Q 037717 75 QAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 75 ~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+..++.+.+.||+|+||||++-.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~ 184 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSR 184 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHH
T ss_pred HhhccCcEEEEECCCCCCHHHHHHH
Confidence 3455688999999999999988844
No 390
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.48 E-value=0.59 Score=51.29 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=19.8
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.++||+||||||++-.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45789999999999999988744
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=80.45 E-value=0.68 Score=43.55 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.1
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..+++.|+.||||||++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 35678999999999999987
No 392
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.44 E-value=0.69 Score=47.70 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+.+++|+|+|||||||.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 6778999999999999776
No 393
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.39 E-value=0.51 Score=51.69 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=20.2
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.++||+||||||++-..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999887443
No 394
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.39 E-value=0.51 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHHhCCCeEEEECCCCCchhchHh
Q 037717 73 LLQAVSGYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 73 il~~i~~~~~viv~a~TGSGKTt~ip 98 (582)
+=-.+..++.+.|.||+||||||++-
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHH
Confidence 33445689999999999999998873
No 395
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=80.32 E-value=0.49 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.++||+||||||.+-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999988743
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.90 E-value=0.74 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.6
Q ss_pred CCeEEEECCCCCchhchHhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~ 99 (582)
....+|+||+||||||.+-.
T Consensus 23 ~~~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHH
Confidence 35789999999999987754
No 397
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=79.90 E-value=0.54 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+.++||+||||||++-.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~ 389 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSL 389 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999988744
No 398
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=79.70 E-value=1.1 Score=53.62 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHHhCCCeEEEECCCCCchhchHhhh----hcc--------------chHHHHHHHHHHHHHHhC
Q 037717 63 TLPIYPFWEELLQAVSGYPVLAIVGETGSGKTTQIPQY----LYE--------------PRWVAAMSVAARVSQEMG 121 (582)
Q Consensus 63 ~lPi~~~~~~il~~i~~~~~viv~a~TGSGKTt~ip~~----ll~--------------P~r~~a~~~a~~va~~~~ 121 (582)
.....+.|.+++..- +++++|.|..|||||+.+-+- +.. +++.+|..+..|+...++
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 345677888887653 678999999999999765432 211 788889998888877554
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.65 E-value=0.66 Score=45.30 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+-+++.||+||||||++
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34899999999999776
No 400
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.61 E-value=1 Score=45.63 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=14.7
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+.+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999654
No 401
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.50 E-value=0.71 Score=47.53 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.3
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++.+++.||+||||||++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346789999999999999876
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.15 E-value=0.61 Score=46.74 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=15.8
Q ss_pred CeEEEECCCCCchhchHh
Q 037717 81 PVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip 98 (582)
++++|+|+.||||||.+-
T Consensus 5 ~v~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEEEESSSSSCHHHHH
T ss_pred cEEEEEecCCCCHHHHHH
Confidence 478999999999998873
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.06 E-value=0.86 Score=43.63 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=17.3
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..+++.|+.||||||++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp CCCEEEEEESTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5778999999999999987
No 404
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.05 E-value=0.7 Score=46.72 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.7
Q ss_pred CCeEEEECCCCCchhchHhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~ 99 (582)
....+|+||+|||||+++-.
T Consensus 23 ~~~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35788999999999988754
No 405
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.04 E-value=0.87 Score=42.95 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=17.2
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..+++.|+.||||||++
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4778999999999999887
No 406
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.02 E-value=0.78 Score=45.98 Aligned_cols=19 Identities=53% Similarity=0.691 Sum_probs=16.3
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
.+.+++||+|||||+++-.
T Consensus 25 g~~~i~G~NGsGKS~ll~a 43 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDA 43 (322)
T ss_dssp SEEEEECCTTTCSTHHHHH
T ss_pred CcEEEECCCCCcHHHHHHH
Confidence 3899999999999988754
No 407
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.95 E-value=0.82 Score=45.03 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.8
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
..++++|++||||||+.
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999875
No 408
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.88 E-value=0.63 Score=48.65 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=20.4
Q ss_pred HHHhCCCe--EEEECCCCCchhchHhhh
Q 037717 75 QAVSGYPV--LAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 75 ~~i~~~~~--viv~a~TGSGKTt~ip~~ 100 (582)
-.+..+.. +.|+||+||||||++-.+
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHH
Confidence 34568888 999999999999988543
No 409
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.47 E-value=0.76 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.5
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.....+++.|+.||||||++-.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHH
Confidence 3456789999999999998733
No 410
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=78.40 E-value=0.78 Score=42.86 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=15.7
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
++.+++.|.-|||||||+
T Consensus 2 ~kFI~~EG~dGsGKsTq~ 19 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVI 19 (205)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 357889999999999987
No 411
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.34 E-value=0.57 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.7
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..+.++.|.||+||||||++-+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4678999999999999987744
No 412
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.20 E-value=0.77 Score=44.95 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.6
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+-+++.||+||||||++
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34899999999999775
No 413
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.10 E-value=0.8 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.0
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..+.+++++|+.||||||++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLa 386 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLA 386 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHH
Confidence 346789999999999999775
No 414
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.05 E-value=0.64 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.3
Q ss_pred HHhCCCeEEEECCCCCchhchHhhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
.+..+.++.|.||+||||||++-+++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999999987753
No 415
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=77.77 E-value=0.95 Score=39.32 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.4
Q ss_pred eEEEECCCCCchhchHhhhh
Q 037717 82 VLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~l 101 (582)
.+++.|++|+|||+++-.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999998885554
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.66 E-value=0.87 Score=44.99 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=12.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..++.|+|+.||||||..
T Consensus 5 ~~iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVK 22 (290)
T ss_dssp SCEEEEESCC---CCTHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457899999999999875
No 417
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.61 E-value=0.99 Score=41.67 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.2
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+-++.++|+.||||||..
T Consensus 12 ~~iIgltG~~GSGKSTva 29 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999775
No 418
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.53 E-value=0.68 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.4
Q ss_pred hCCCeEEEECCCCCchhchHhhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
..+.++.|.||+||||||++-++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHH
Confidence 36789999999999999887543
No 419
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.49 E-value=0.72 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHhC--CCeEEEECCCCCchhchHhh
Q 037717 76 AVSG--YPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 76 ~i~~--~~~viv~a~TGSGKTt~ip~ 99 (582)
.+.. ++.+.|+||+||||||++-.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~ 189 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNK 189 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHH
Confidence 3455 77899999999999998743
No 420
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.47 E-value=0.85 Score=48.82 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.2
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
....+++|.|+||||||+.+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHH
T ss_pred ccCceEEEECCCCCCHHHHH
Confidence 45678999999999999766
No 421
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=77.38 E-value=1.4 Score=44.98 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
....++.+.++|++|+||||++-.+
T Consensus 211 ~~~~G~~~~lvG~sG~GKSTLln~L 235 (358)
T 2rcn_A 211 EALTGRISIFAGQSGVGKSSLLNAL 235 (358)
T ss_dssp HHHTTSEEEEECCTTSSHHHHHHHH
T ss_pred HhcCCCEEEEECCCCccHHHHHHHH
Confidence 3457889999999999999988443
No 422
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=77.09 E-value=1.4 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=18.6
Q ss_pred HHHHH--hCCCeEEEECCCCCchhchH
Q 037717 73 LLQAV--SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 73 il~~i--~~~~~viv~a~TGSGKTt~i 97 (582)
++..+ ....++++.||+|+|||+.+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 44444 34568999999999999654
No 423
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.02 E-value=0.92 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.4
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.++.|+|+.||||||+.
T Consensus 23 ~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 36889999999999764
No 424
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.02 E-value=1.4 Score=43.61 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=19.8
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++.+.+.||+||||||++-.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHh
Confidence 456788999999999999888443
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.67 E-value=0.82 Score=49.45 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.1
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..++++.++||.||||||++-.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l 67 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKIL 67 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 578899999999999999988665
No 426
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=76.55 E-value=0.81 Score=46.30 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=21.6
Q ss_pred HHHHHH----hCCCeEEEECCCCCchhchHhh
Q 037717 72 ELLQAV----SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 72 ~il~~i----~~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+++.+ ..+.++.++|++||||||++-.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~ 74 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDA 74 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHH
Confidence 455544 4678899999999999998743
No 427
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=76.44 E-value=1.1 Score=39.25 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=15.5
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+||||++-.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3788999999999887443
No 428
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=76.36 E-value=0.81 Score=48.32 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCeEEEECCCCCchhchHhhh
Q 037717 71 EELLQAVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 71 ~~il~~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+.++.-+..++.++|.|++|+||||.+-++
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~i 223 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNI 223 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHH
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 344445667899999999999999776443
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.33 E-value=0.89 Score=43.27 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.5
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
+..+++.|..||||||++
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 356889999999999886
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=76.26 E-value=1.2 Score=42.39 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=16.1
Q ss_pred CCCeEEEECCCCCchhchHh
Q 037717 79 GYPVLAIVGETGSGKTTQIP 98 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip 98 (582)
..-++.|.||+||||||+.-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34579999999999998764
No 431
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.00 E-value=0.93 Score=54.56 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..++.+-|+|+|||||||++-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~l 1124 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVAL 1124 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHH
Confidence 45788999999999999998744
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.97 E-value=1.2 Score=41.02 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
++.|+|+.||||||+.
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999775
No 433
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.93 E-value=0.81 Score=45.93 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=19.0
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+.+++|.|++|||||+.+-+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~ 126 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQ 126 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHH
Confidence 45678999999999999977644
No 434
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.76 E-value=1.1 Score=40.39 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.0
Q ss_pred CCeEEEECCCCCchhchHhhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ 100 (582)
.-.+++.|++|+|||+++-.+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 346899999999999887444
No 435
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=75.71 E-value=1 Score=39.03 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=15.4
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+||||++-.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999887443
No 436
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.66 E-value=1.1 Score=40.88 Aligned_cols=19 Identities=21% Similarity=0.746 Sum_probs=15.4
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|+.|+||||++-.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3788999999999887443
No 437
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=75.35 E-value=1.2 Score=39.51 Aligned_cols=19 Identities=37% Similarity=0.779 Sum_probs=15.9
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.++++|++|+|||+++-.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999887544
No 438
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=75.06 E-value=0.88 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.9
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..++.+.|+||.||||||++-.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTT
T ss_pred cCCCEEEEEeeCCCCHHHHHHH
Confidence 4688999999999999998743
No 439
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.84 E-value=0.93 Score=46.11 Aligned_cols=25 Identities=32% Similarity=0.318 Sum_probs=20.2
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
-+..+++++|.||+||||||++-++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHH
Confidence 3446789999999999999876554
No 440
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.81 E-value=0.9 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.7
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+.+++|.||+|||||+.+-+
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~ 141 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHT 141 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 34678999999999999976644
No 441
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.75 E-value=1.2 Score=43.79 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.8
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
.+++|+|+.||||||+.
T Consensus 76 ~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46899999999999775
No 442
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=74.75 E-value=1.1 Score=40.70 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=15.1
Q ss_pred eEEEECCCCCchhchHhh
Q 037717 82 VLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~ 99 (582)
.+++.|+.||||||++-.
T Consensus 31 kv~lvG~~g~GKSTLl~~ 48 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSR 48 (191)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 478899999999988743
No 443
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=74.66 E-value=1.3 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.660 Sum_probs=15.5
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4788999999999887443
No 444
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=74.64 E-value=1.3 Score=38.50 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.4
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999887443
No 445
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.63 E-value=1.3 Score=38.76 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=15.5
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999887443
No 446
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.58 E-value=1.2 Score=41.76 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.7
Q ss_pred CeEEEECCCCCchhchH
Q 037717 81 PVLAIVGETGSGKTTQI 97 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~i 97 (582)
+.+++.||+|+|||+.+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46999999999999664
No 447
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=74.40 E-value=1.3 Score=38.54 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.5
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999887443
No 448
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=74.31 E-value=1.3 Score=40.53 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.0
Q ss_pred EEEECCCCCchhchH
Q 037717 83 LAIVGETGSGKTTQI 97 (582)
Q Consensus 83 viv~a~TGSGKTt~i 97 (582)
++|.|++|||||+..
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999665
No 449
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=74.25 E-value=1.3 Score=38.70 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=15.6
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999887444
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.12 E-value=1.5 Score=45.64 Aligned_cols=18 Identities=44% Similarity=0.556 Sum_probs=15.7
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
..+++++|+.||||||++
T Consensus 258 ~~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 468999999999999775
No 451
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.10 E-value=0.87 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=19.4
Q ss_pred HhCCCeEEEECCCCCchhchHhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
+..+.++.|.||+||||||++-++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~l 81 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHA 81 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999876543
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=74.10 E-value=1.3 Score=39.01 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.8
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+||||++-.+
T Consensus 5 ~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999887544
No 453
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=74.04 E-value=1.3 Score=41.19 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.-..++++|++|+||||++-.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~ 49 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIER 49 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH
Confidence 345789999999999987743
No 454
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.90 E-value=3 Score=43.70 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.9
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356999999999999654
No 455
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.86 E-value=1.5 Score=43.90 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=14.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
...+++.||+|+|||+.+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 345999999999999554
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=73.75 E-value=1 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.5
Q ss_pred hCCCeEEEECCCCCchhchHhhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
..++++.|.||.||||||++-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l 314 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARIL 314 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999887443
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=73.69 E-value=1.4 Score=39.63 Aligned_cols=20 Identities=60% Similarity=0.811 Sum_probs=16.5
Q ss_pred EEEECCCCCchhchHhhhhc
Q 037717 83 LAIVGETGSGKTTQIPQYLY 102 (582)
Q Consensus 83 viv~a~TGSGKTt~ip~~ll 102 (582)
+++.|++|+||||++-.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78899999999988865543
No 458
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.69 E-value=2 Score=45.23 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+.+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999553
No 459
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=73.66 E-value=1.2 Score=40.19 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.8
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999887444
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=73.64 E-value=1.1 Score=49.22 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.6
Q ss_pred HhCCCeEEEECCCCCchhchHhhhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~~l 101 (582)
+..++++.+.||.||||||++-.+.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHh
Confidence 5788999999999999999886653
No 461
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=73.63 E-value=3.6 Score=42.26 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCCCCc----ccc
Q 037717 257 EPTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATNIAE----TSL 332 (582)
Q Consensus 257 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~iae----~gi 332 (582)
..++.+||.+|++.-+...++.+..... .++.+..+||+.+..++....+....|...|+|+|+-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4467899999999999999988887432 367899999999997776666666667789999997221 124
Q ss_pred ccCCeeEEE
Q 037717 333 TIDGIKYVI 341 (582)
Q Consensus 333 dIp~v~~VI 341 (582)
...++.+||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 455777776
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=73.58 E-value=1.3 Score=38.83 Aligned_cols=20 Identities=20% Similarity=0.680 Sum_probs=16.3
Q ss_pred eEEEECCCCCchhchHhhhh
Q 037717 82 VLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~l 101 (582)
.+++.|++|+|||+++-.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37889999999998875553
No 463
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=73.57 E-value=1.4 Score=38.41 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.3
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999887443
No 464
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=73.52 E-value=1.4 Score=38.92 Aligned_cols=19 Identities=26% Similarity=0.698 Sum_probs=15.9
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999887554
No 465
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=73.48 E-value=1.4 Score=38.53 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=15.6
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4788999999999887443
No 466
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.45 E-value=0.67 Score=44.77 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=14.8
Q ss_pred CCeEEEECCCCCchhchH
Q 037717 80 YPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~i 97 (582)
.+.+++.||+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 445889999999999664
No 467
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=73.19 E-value=1.4 Score=41.65 Aligned_cols=19 Identities=47% Similarity=0.585 Sum_probs=16.6
Q ss_pred CCCeEEEECCCCCchhchH
Q 037717 79 GYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~i 97 (582)
.+..+++.|+.||||||++
T Consensus 20 ~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4568899999999999886
No 468
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=73.17 E-value=1.2 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=17.3
Q ss_pred CeEEEECCCCCchhchHhhhh
Q 037717 81 PVLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~~l 101 (582)
-.++++|++|+||||++-.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458999999999998885553
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.06 E-value=1.1 Score=49.02 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.4
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+..++++.+.||.||||||++-.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL 123 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKIL 123 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHH
Confidence 3568999999999999999987654
No 470
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.04 E-value=1.3 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.9
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+..+++.||+|+|||+++-+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHH
Confidence 44567789999999999976533
No 471
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.98 E-value=0.92 Score=45.34 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.6
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+.+++|.|++|||||+.+-+
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 34578999999999999976544
No 472
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=72.91 E-value=0.49 Score=49.14 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=17.0
Q ss_pred CCCeEEEECCCCCchhchHhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~ 99 (582)
.+ .++++||+||||||++-.
T Consensus 60 ~G-~~~lvG~NGaGKStLl~a 79 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDA 79 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHH
T ss_pred CC-cEEEECCCCCCHHHHHHH
Confidence 55 899999999999988743
No 473
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=72.85 E-value=1.4 Score=40.73 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=14.4
Q ss_pred eEEEECCCCCchhchHh
Q 037717 82 VLAIVGETGSGKTTQIP 98 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip 98 (582)
.+++.|.-|||||||+-
T Consensus 2 fI~~EG~DGsGKsTq~~ 18 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999999973
No 474
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=72.48 E-value=9.9 Score=37.92 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=55.5
Q ss_pred CCCeEEEECCCCCchhchHhhhhccchHHHHHHHHHHHHHHhCCccCcEEeEEEeecccCCCCccEEEEChHHHHHHHHc
Q 037717 79 GYPVLAIVGETGSGKTTQIPQYLYEPRWVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDCMLLREIVI 158 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ll~P~r~~a~~~a~~va~~~~~~~g~~vgy~v~~~~~~~~~t~I~~~T~g~Ll~~l~~ 158 (582)
-..+.++.||-|.||++.+- .+++.+... +. .... .+.++. . .....+...+..
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~------------~l~~~~~~~-~~---~~~~-~~~~~~----~-----~~~~~l~~~~~~ 70 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQD------------AVRQVAAAQ-GF---EEHH-TFSIDP----N-----TDWNAIFSLCQA 70 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHH------------HHHHHHHHH-TC---CEEE-EEECCT----T-----CCHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHH------------HHHHHHHhC-CC---CeeE-EEEecC----C-----CCHHHHHHHhcC
Confidence 44688999999999985542 222222211 11 1111 122221 1 334667777777
Q ss_pred CCCCCCCCceEeecccCCCcchhHHHHHHHHHHhhCCCceEEEecccCC
Q 037717 159 EPSLESYSVLIVDEAQERTLSTDNLFGLLKDLINYRPDLKLLISSATLD 207 (582)
Q Consensus 159 ~~~l~~~~~vViDE~HeR~~~~d~ll~~lk~~~~~~~~~kii~~SAT~~ 207 (582)
.|.+.+..+|||||+|. .+..+..-.+++.+-.-.++..+|+.+.+++
T Consensus 71 ~plf~~~kvvii~~~~~-kl~~~~~~aLl~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPEN-GPNAAINEQLLTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp HHHCCSCEEEEEECCSS-CCCTTHHHHHHHHHTTCBTTEEEEEEESCCC
T ss_pred cCCccCCeEEEEECCCC-CCChHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 77788999999999994 2233332233333222334566666655554
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=72.42 E-value=1.5 Score=39.27 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.8
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+||||++-.+
T Consensus 9 ~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999887443
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=72.42 E-value=1.8 Score=40.99 Aligned_cols=20 Identities=35% Similarity=0.312 Sum_probs=16.7
Q ss_pred hCCCeEEEECCCCCchhchH
Q 037717 78 SGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~i 97 (582)
..+..+.++|+.||||||+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 34567999999999999775
No 477
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=72.40 E-value=1.5 Score=38.72 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=16.5
Q ss_pred eEEEECCCCCchhchHhhhh
Q 037717 82 VLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~l 101 (582)
.+++.|++|+|||+++-.++
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999998885554
No 478
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=72.38 E-value=1.5 Score=38.32 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=15.8
Q ss_pred EEEECCCCCchhchHhhhh
Q 037717 83 LAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 83 viv~a~TGSGKTt~ip~~l 101 (582)
+++.|++|+|||+++-.++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999998885543
No 479
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=72.29 E-value=1.5 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.5
Q ss_pred CCCeEEEECCCCCchhchHhhh
Q 037717 79 GYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 79 ~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+.+++|+||+||||||++-.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999877544
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=72.29 E-value=1.2 Score=47.28 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.5
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
.++.|.||+||||||++-.
T Consensus 30 e~~~liG~nGsGKSTLl~~ 48 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAG 48 (483)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 6889999999999988743
No 481
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=72.23 E-value=1.6 Score=38.14 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=15.4
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999887443
No 482
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=72.21 E-value=1.9 Score=38.15 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=17.1
Q ss_pred CCeEEEECCCCCchhchHhhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ 100 (582)
...+++.|++|+|||+++-.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 456889999999999887544
No 483
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=72.02 E-value=1.1 Score=45.33 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCeEEEECCCCCchhchHhhh
Q 037717 70 WEELLQAVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 70 ~~~il~~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
-+.++.-+..++.++|.|++|+|||+.+-++
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~i 66 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNM 66 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 3445555778899999999999999776544
No 484
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=72.00 E-value=1.5 Score=40.71 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=13.7
Q ss_pred eEEEECCCCCchhchH
Q 037717 82 VLAIVGETGSGKTTQI 97 (582)
Q Consensus 82 ~viv~a~TGSGKTt~i 97 (582)
..+++|+.|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5789999999999654
No 485
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=72.00 E-value=1.6 Score=44.38 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.4
Q ss_pred CCeEEEECCCCCchhchHhhh
Q 037717 80 YPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 80 ~~~viv~a~TGSGKTt~ip~~ 100 (582)
..++.++|++|+||||++-.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L 94 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYF 94 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHH
Confidence 457899999999999988443
No 486
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.95 E-value=1.7 Score=40.24 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=15.7
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
-.+++.|++|+|||+++-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~ 31 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTL 31 (218)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999987733
No 487
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=71.92 E-value=1.2 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.7
Q ss_pred HhCCCeEEEECCCCCchhchH
Q 037717 77 VSGYPVLAIVGETGSGKTTQI 97 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~i 97 (582)
+..++++.|+||.||||||++
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 357889999999999999996
No 488
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=71.88 E-value=0.55 Score=46.88 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHhCCCeEEEECCCCCchhchHhhh
Q 037717 76 AVSGYPVLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 76 ~i~~~~~viv~a~TGSGKTt~ip~~ 100 (582)
.+..++.+.+.|++|+||||++-.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHh
Confidence 3557899999999999999988544
No 489
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=71.81 E-value=2.5 Score=42.62 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=33.3
Q ss_pred ccchhchhhhcCCCChHHHHHHHhccccc-ChHHHHHHHHhhccCCCccccChhhHHHHHHHhh---hcc-CCCCCcHHH
Q 037717 453 QLTRVGRQMAEFPIDPKLSKTIVSLDKYK-CSDEIITIAAMLFVGNSIFYRPKDKQIYADNARM---NFH-LGDVGDRIA 527 (582)
Q Consensus 453 ~lT~lG~~~a~lpl~p~~~k~l~~~~~~~-c~~~~l~i~a~l~~~~~~f~~~~~~~~~~~~~~~---~f~-~~~~sD~~~ 527 (582)
..|++|+++|.++|++..++.+.....-. ...+++.+.|.-.....+.++..+.....+..+. .+. .+-.+-|.-
T Consensus 14 ~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~K 93 (339)
T 2q0z_X 14 APLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVK 93 (339)
T ss_dssp -----------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHH
T ss_pred ccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCHHHH
Confidence 57999999999999999999998766543 5677888888888877888887766544433221 111 111234555
Q ss_pred HHHHHHHHHHc
Q 037717 528 LLRVYNCWREC 538 (582)
Q Consensus 528 ~l~~~~~~~~~ 538 (582)
..-+.++|...
T Consensus 94 ~~lLLqa~isr 104 (339)
T 2q0z_X 94 TNLLLQAHLSR 104 (339)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 55556777653
No 490
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=71.71 E-value=1.2 Score=45.45 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=19.1
Q ss_pred HhCCCeEEEECCCCCchhchHhh
Q 037717 77 VSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 77 i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
+..+++++|.|++||||||++-+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~ 82 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQ 82 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 44678999999999999977644
No 491
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=71.69 E-value=1.7 Score=38.30 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=16.2
Q ss_pred eEEEECCCCCchhchHhhhh
Q 037717 82 VLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~l 101 (582)
.+++.|++|+|||+++-.++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 37889999999998875543
No 492
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=71.67 E-value=1.6 Score=41.32 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=16.5
Q ss_pred eEEEECCCCCchhchHhhhh
Q 037717 82 VLAIVGETGSGKTTQIPQYL 101 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~l 101 (582)
.++++|++|+||||++-.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58899999999998875543
No 493
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=71.67 E-value=1.1 Score=47.10 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCeEEEECCCCCchhchHhh
Q 037717 71 EELLQAVSGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 71 ~~il~~i~~~~~viv~a~TGSGKTt~ip~ 99 (582)
++++.-+..++.++|.|++|+|||+.+-+
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ 219 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALT 219 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHH
Confidence 44444566789999999999999976543
No 494
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=71.36 E-value=1.5 Score=38.67 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=15.5
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.+++.|++|+|||+++-.+
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788899999999887443
No 495
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=71.15 E-value=5.4 Score=47.22 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=63.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhhhccCCCCCCeEEEEecCCCCHHHHHHhcCCCCCCCcEEEEeCC-CCccccccCC
Q 037717 258 PTGDILVFLTGQDEIERAEEILKQRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPERARKVVLATN-IAETSLTIDG 336 (582)
Q Consensus 258 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kVivaT~-iae~gidIp~ 336 (582)
.+.+++|.+|++.-+...++.+.+.+.. .++.+..+++..+..++..+.+....|...|||+|. .+...+...+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 3568999999999999998888876543 246688899999999998888888889999999995 3444577888
Q ss_pred eeEEE
Q 037717 337 IKYVI 341 (582)
Q Consensus 337 v~~VI 341 (582)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 88766
No 496
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=70.99 E-value=1.3 Score=48.59 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.1
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..++++.|.||.||||||++-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~ 401 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKM 401 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4688999999999999998744
No 497
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=70.99 E-value=1.6 Score=40.61 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.8
Q ss_pred CeEEEECCCCCchhchHhh
Q 037717 81 PVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 81 ~~viv~a~TGSGKTt~ip~ 99 (582)
..++++|..|+||||++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~ 57 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEK 57 (226)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4688889999999988744
No 498
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=70.98 E-value=1.7 Score=38.29 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=15.8
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.++++|++|+|||+++-.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999887444
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=70.97 E-value=1.3 Score=47.83 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.0
Q ss_pred hCCCeEEEECCCCCchhchHhh
Q 037717 78 SGYPVLAIVGETGSGKTTQIPQ 99 (582)
Q Consensus 78 ~~~~~viv~a~TGSGKTt~ip~ 99 (582)
..++++.|.||.||||||++-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~ 331 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKM 331 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4688999999999999988744
No 500
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=70.92 E-value=1.8 Score=38.43 Aligned_cols=19 Identities=26% Similarity=0.747 Sum_probs=15.8
Q ss_pred eEEEECCCCCchhchHhhh
Q 037717 82 VLAIVGETGSGKTTQIPQY 100 (582)
Q Consensus 82 ~viv~a~TGSGKTt~ip~~ 100 (582)
.++++|++|+|||+++-.+
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4788999999999887544
Done!