BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037720
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 164/345 (47%), Gaps = 43/345 (12%)
Query: 26 CPPSDRAALLAFKSALHEPYIGIFNSWT-GNDCCH-NWYGVSCDP--ETHQVAEITLRGK 81
C P D+ ALL K L P +SW DCC+ W GV CD +T++V + L G
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 82 SEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLT 141
+ + I ++ LP+L+ L + + G IP L L L +T
Sbjct: 61 NLPKPYP-----------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 142 GNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCF 201
+SG IP + ++ L L+ + N +SG +P SI +L +L+ + NRISG IP +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 202 GRLHMLSRAL-LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNL 260
G L ++ +S N+++G IP + + + L +DLS N + G G + ++L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 261 DFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTL 320
N L + + LSKN L G LDL N++ G +P+ L
Sbjct: 229 AKNS---------LAFDLGKVGLSKN-LNG--------------LDLRNNRIYGTLPQGL 264
Query: 321 SGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGKPL 365
+ ++ L++S NNLCG+IP G D S++ +NKCLCG PL
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 143/316 (45%), Gaps = 70/316 (22%)
Query: 96 MTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGK 155
+ G I + + L +L L D+ ++GEIP + L + L+ N+++GEIP+ IG+
Sbjct: 451 LEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGC-FGRLHMLSRALLSG 214
L L++L +++N SG IP +G+ SL+ LD+ N +G IP F + ++ ++G
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 215 --------------------------------NQISGTIPSSI-SRVY------------ 229
N++S P +I SRVY
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 230 RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLE 289
+ LD+S N +SG IP +G MP L LNL N SG
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG---------------------- 667
Query: 290 GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHL 349
IPD G +LDLS NKL G IP+ +S + + +DLS+NNL G IP F+
Sbjct: 668 -SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 350 DASSFESNKCLCGKPL 365
+ F +N LCG PL
Sbjct: 727 PPAKFLNNPGLCGYPL 742
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
Query: 143 NKISGEIPRH-IGKLHRLSVLNIADNYVSGPIPGSIGNLS-SLMHLDVRNNRISGPI-PG 199
N SGE+P + K+ L VL+++ N SG +P S+ NLS SL+ LD+ +N SGPI P
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 200 -CFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTL 258
C + L L N +G IP ++S L L LS N +SG IP+SLG + L L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 259 NLDFNRFSGVIPASLL-TSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIP 317
L N G IP L+ + L L N L G+IP + + LS N+L+G IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 318 RTLSGTSYIGYLDLSHNNLCGKIPA 342
+ + + L LS+N+ G IPA
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPA 529
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 129/299 (43%), Gaps = 58/299 (19%)
Query: 96 MTGFISPAVCKLPH--LSSLTLTDWEGISGEIP----RCSTLLPFLRILDLTGNKISGEI 149
+G I P +C+ P L L L + G +G+IP CS L+ L L+ N +SG I
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVS----LHLSFNYLSGTI 431
Query: 150 PRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209
P +G L +L L + N + G IP + + +L L + N ++G IP L+
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVI 269
LS N+++G IP I R+ L L LS N SG IPA LG L L+L+ N F+G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 270 PASLLTS---------------------------GVNNL--------------------N 282
PA++ G NL N
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 283 LSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341
++ G F M LD+SYN LSG IP+ + Y+ L+L HN++ G IP
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 122/273 (44%), Gaps = 58/273 (21%)
Query: 129 STLLPFL------RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIP-------- 174
ST +PFL + LD++GNK+SG+ R I L +LNI+ N GPIP
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 175 ----------GSI-----GNLSSLMHLDVRNNRISGPIPGCFG----------------- 202
G I G +L LD+ N G +P FG
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 203 --------RLHMLSRALLSGNQISGTIPSSISRV-YRLTDLDLSTNQISGPIPASLGKMP 253
++ L LS N+ SG +P S++ + L LDLS+N SGPI +L + P
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 254 D--LSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYN 310
L L L N F+G IP +L S + +L+LS N L G IP + G S L L N
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 311 KLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343
L G IP+ L + L L N+L G+IP+G
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 118/262 (45%), Gaps = 59/262 (22%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L ++GNKISG++ + + L L+++ N S IP +G+ S+L HLD+ N++S
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 195 ------------------------GPIPGCFGRLHMLSRALLSGNQISGTIPSSISRV-Y 229
GPIP L L L+ N+ +G IP +S
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 230 RLTDLDLSTNQISGPIPASLG-------------------------KMPDLSTLNLDFNR 264
LT LDLS N G +P G KM L L+L FN
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 265 FSGVIPASL--LTSGVNNLNLSKNSLEGKI-PD-AFGPKSYFMVLDLSYNKLSGPIPRTL 320
FSG +P SL L++ + L+LS N+ G I P+ PK+ L L N +G IP TL
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 321 SGTSYIGYLDLSHNNLCGKIPA 342
S S + L LS N L G IP+
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPS 433
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 129/291 (44%), Gaps = 50/291 (17%)
Query: 87 FQRAHRTGYMTGFISPAVC---KLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGN 143
R +G +T S C K ++SS TL +SG + S L +LDL+ N
Sbjct: 104 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS-----LEVLDLSAN 158
Query: 144 KISGE------IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
ISG + G+L L+ I+ N +SG + + +L LDV +N S I
Sbjct: 159 SISGANVVGWVLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLST 257
P G L +SGN++SG +IS L L++S+NQ GPIP + L
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 270
Query: 258 LNLDFNRFSGVIPASL--LTSGVNNLNLSKNSLEGKIPDAFG------------------ 297
L+L N+F+G IP L + L+LS N G +P FG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 298 -PKSYFM------VLDLSYNKLSGPIPRTLSGTSY-IGYLDLSHNNLCGKI 340
P + VLDLS+N+ SG +P +L+ S + LDLS NN G I
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 39/210 (18%)
Query: 164 IADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIP------GCFG--------------- 202
+++++++G + G +SL LD+ N +SGP+ C G
Sbjct: 81 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 203 ------RLHMLSRALLSGNQISGTIPSSISRVY-----RLTDLDLSTNQISGPIPASLGK 251
+L+ L LS N ISG + + V L L +S N+ISG + S +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS--R 195
Query: 252 MPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNK 311
+L L++ N FS IP S + +L++S N L G A + +L++S N+
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 312 LSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341
GPIP + YL L+ N G+IP
Sbjct: 256 FVGPIPPL--PLKSLQYLSLAENKFTGEIP 283
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 211 LLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIP--ASLGKMPDLSTLNLDFNR--FS 266
LS + I+G++ S LT LDLS N +SGP+ SLG L LN+ N F
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 267 GVIPASLLTSGVNNLNLSKNSLEGK------IPDAFGPKSYFMVLDLSYNKLSGPIPRTL 320
G + L + + L+LS NS+ G + D G + L +S NK+SG + +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH---LAISGNKISGDV--DV 193
Query: 321 SGTSYIGYLDLSHNNLCGKIP---AGSPFDHLDAS 352
S + +LD+S NN IP S HLD S
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 228
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 143/316 (45%), Gaps = 70/316 (22%)
Query: 96 MTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGK 155
+ G I + + L +L L D+ ++GEIP + L + L+ N+++GEIP+ IG+
Sbjct: 454 LEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGC-FGRLHMLSRALLSG 214
L L++L +++N SG IP +G+ SL+ LD+ N +G IP F + ++ ++G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 215 --------------------------------NQISGTIPSSI-SRVY------------ 229
N++S P +I SRVY
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 230 RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLE 289
+ LD+S N +SG IP +G MP L LNL N SG
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG---------------------- 670
Query: 290 GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHL 349
IPD G +LDLS NKL G IP+ +S + + +DLS+NNL G IP F+
Sbjct: 671 -SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 350 DASSFESNKCLCGKPL 365
+ F +N LCG PL
Sbjct: 730 PPAKFLNNPGLCGYPL 745
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
Query: 143 NKISGEIPRH-IGKLHRLSVLNIADNYVSGPIPGSIGNLS-SLMHLDVRNNRISGPI-PG 199
N SGE+P + K+ L VL+++ N SG +P S+ NLS SL+ LD+ +N SGPI P
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 200 -CFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTL 258
C + L L N +G IP ++S L L LS N +SG IP+SLG + L L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 259 NLDFNRFSGVIPASLL-TSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIP 317
L N G IP L+ + L L N L G+IP + + LS N+L+G IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 318 RTLSGTSYIGYLDLSHNNLCGKIPA 342
+ + + L LS+N+ G IPA
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPA 532
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 129/299 (43%), Gaps = 58/299 (19%)
Query: 96 MTGFISPAVCKLPH--LSSLTLTDWEGISGEIP----RCSTLLPFLRILDLTGNKISGEI 149
+G I P +C+ P L L L + G +G+IP CS L+ L L+ N +SG I
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVS----LHLSFNYLSGTI 434
Query: 150 PRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209
P +G L +L L + N + G IP + + +L L + N ++G IP L+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVI 269
LS N+++G IP I R+ L L LS N SG IPA LG L L+L+ N F+G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 270 PASLLTS---------------------------GVNNL--------------------N 282
PA++ G NL N
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 283 LSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341
++ G F M LD+SYN LSG IP+ + Y+ L+L HN++ G IP
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 122/273 (44%), Gaps = 58/273 (21%)
Query: 129 STLLPFL------RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIP-------- 174
ST +PFL + LD++GNK+SG+ R I L +LNI+ N GPIP
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272
Query: 175 ----------GSI-----GNLSSLMHLDVRNNRISGPIPGCFG----------------- 202
G I G +L LD+ N G +P FG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 203 --------RLHMLSRALLSGNQISGTIPSSISRV-YRLTDLDLSTNQISGPIPASLGKMP 253
++ L LS N+ SG +P S++ + L LDLS+N SGPI +L + P
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 254 D--LSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYN 310
L L L N F+G IP +L S + +L+LS N L G IP + G S L L N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 311 KLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343
L G IP+ L + L L N+L G+IP+G
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 118/262 (45%), Gaps = 59/262 (22%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L ++GNKISG++ + + L L+++ N S IP +G+ S+L HLD+ N++S
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 195 ------------------------GPIPGCFGRLHMLSRALLSGNQISGTIPSSISRV-Y 229
GPIP L L L+ N+ +G IP +S
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 230 RLTDLDLSTNQISGPIPASLG-------------------------KMPDLSTLNLDFNR 264
LT LDLS N G +P G KM L L+L FN
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 265 FSGVIPASL--LTSGVNNLNLSKNSLEGKI-PD-AFGPKSYFMVLDLSYNKLSGPIPRTL 320
FSG +P SL L++ + L+LS N+ G I P+ PK+ L L N +G IP TL
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 321 SGTSYIGYLDLSHNNLCGKIPA 342
S S + L LS N L G IP+
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPS 436
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 129/291 (44%), Gaps = 50/291 (17%)
Query: 87 FQRAHRTGYMTGFISPAVC---KLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGN 143
R +G +T S C K ++SS TL +SG + S L +LDL+ N
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS-----LEVLDLSAN 161
Query: 144 KISGE------IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
ISG + G+L L+ I+ N +SG + + +L LDV +N S I
Sbjct: 162 SISGANVVGWVLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLST 257
P G L +SGN++SG +IS L L++S+NQ GPIP + L
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273
Query: 258 LNLDFNRFSGVIPASL--LTSGVNNLNLSKNSLEGKIPDAFG------------------ 297
L+L N+F+G IP L + L+LS N G +P FG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 298 -PKSYFM------VLDLSYNKLSGPIPRTLSGTSY-IGYLDLSHNNLCGKI 340
P + VLDLS+N+ SG +P +L+ S + LDLS NN G I
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 39/210 (18%)
Query: 164 IADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIP------GCFG--------------- 202
+++++++G + G +SL LD+ N +SGP+ C G
Sbjct: 84 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 203 ------RLHMLSRALLSGNQISGTIPSSISRVY-----RLTDLDLSTNQISGPIPASLGK 251
+L+ L LS N ISG + + V L L +S N+ISG + S +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS--R 198
Query: 252 MPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNK 311
+L L++ N FS IP S + +L++S N L G A + +L++S N+
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 312 LSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341
GPIP + YL L+ N G+IP
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 211 LLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIP--ASLGKMPDLSTLNLDFNR--FS 266
LS + I+G++ S LT LDLS N +SGP+ SLG L LN+ N F
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 267 GVIPASLLTSGVNNLNLSKNSLEGK------IPDAFGPKSYFMVLDLSYNKLSGPIPRTL 320
G + L + + L+LS NS+ G + D G + L +S NK+SG + +
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH---LAISGNKISGDV--DV 196
Query: 321 SGTSYIGYLDLSHNNLCGKIP---AGSPFDHLDAS 352
S + +LD+S NN IP S HLD S
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L+ + N+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 185 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 237
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT + NL L++
Sbjct: 238 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNE 292
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 293 NQLEDISP 300
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 98 GFISPAVCKLPHLSSLTLTDWEGIS-GEIPRCSTL--LPFLRILDLTGNKISGEIPRHIG 154
F S V L L++LT + IS ++ S L L L L T N+IS P +G
Sbjct: 157 NFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LG 214
Query: 155 KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214
L L L++ N + G++ +L++L LD+ NN+IS P L L+ L
Sbjct: 215 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLL 274
NQIS P ++ + LT+L+L+ NQ+ P S + +L+ L L FN S + P S L
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSL 326
Query: 275 T 275
T
Sbjct: 327 T 327
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L + N+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 185 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 237
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT + NL L++
Sbjct: 238 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNE 292
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 293 NQLEDISP 300
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L + N+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 185 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 237
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT + NL L++
Sbjct: 238 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNE 292
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 293 NQLEDISP 300
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 98 GFISPAVCKLPHLSSLTLTDWEGIS-GEIPRCSTL--LPFLRILDLTGNKISGEIPRHIG 154
F S V L L++LT + IS ++ S L L L L T N+IS P +G
Sbjct: 157 SFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LG 214
Query: 155 KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214
L L L++ N + G++ +L++L LD+ NN+IS P L L+ L
Sbjct: 215 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLL 274
NQIS P ++ + LT+L+L+ NQ+ P S + +L+ L L FN S + P S L
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSL 326
Query: 275 T 275
T
Sbjct: 327 T 327
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L+ GN+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNK 183
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 184 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 236
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT + NL L++
Sbjct: 237 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNE 291
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 292 NQLEDISP 299
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 104 VCKLPHLSSLTLTDWEGIS-GEIPRCSTL--LPFLRILDLTGNKISGEIPRHIGKLHRLS 160
V L L++LT + IS ++ S L L L L T N+IS P +G L L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 219
Query: 161 VLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT 220
L++ N + G++ +L++L LD+ NN+IS P L L+ L NQIS
Sbjct: 220 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 275
Query: 221 IPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT 275
P ++ + LT+L+L+ NQ+ P S + +L+ L L FN S + P S LT
Sbjct: 276 SP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT 326
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L+ GN+++ P + L L L+I+ N
Sbjct: 135 ELSSNTISDISALSG--------LTSLQQLNF-GNQVTDLKP--LANLTTLERLDISSNK 183
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 184 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 236
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT + NL L++
Sbjct: 237 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNE 291
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 292 NQLEDISP 299
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L GN+++ P + L L L+I+ N
Sbjct: 140 ELSSNTISDISALSG--------LTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNK 188
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 189 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 241
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT + NL L++
Sbjct: 242 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNE 296
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 297 NQLEDISP 304
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 104 VCKLPHLSSLTLTDWEGIS-GEIPRCSTL--LPFLRILDLTGNKISGEIPRHIGKLHRLS 160
V L L++LT + IS ++ S L L L L T N+IS P +G L L
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 224
Query: 161 VLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT 220
L++ N + G++ +L++L LD+ NN+IS P L L+ L NQIS
Sbjct: 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280
Query: 221 IPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT 275
P ++ + LT+L+L+ NQ+ P S + +L+ L L FN S + P S LT
Sbjct: 281 SP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT 331
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
LSS T++D +SG L L+ L GN+++ P + L L L+I+ N
Sbjct: 139 ELSSNTISDISALSG--------LTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNK 187
Query: 169 VSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSI 225
VS + + NL SL+ NN+IS P G L L L+GNQ+ GT+ S
Sbjct: 188 VSDISVLAKLTNLESLI---ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS-- 240
Query: 226 SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSK 285
+ LTDLDL+ NQIS P L + L+ L L N+ S + P + LT+ + NL L++
Sbjct: 241 --LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA-LTNLELNE 295
Query: 286 NSLEGKIP 293
N LE P
Sbjct: 296 NQLEDISP 303
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 104 VCKLPHLSSLTLTDWEGIS-GEIPRCSTL--LPFLRILDLTGNKISGEIPRHIGKLHRLS 160
V L L++LT + IS ++ S L L L L T N+IS P +G L L
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 223
Query: 161 VLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT 220
L++ N + G++ +L++L LD+ NN+IS P L L+ L NQIS
Sbjct: 224 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 279
Query: 221 IPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT 275
P ++ + LT+L+L+ NQ+ P S + +L+ L L FN S + P S LT
Sbjct: 280 SP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLT 330
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215
L +L+ LN+ N + G +L+ L L + NN+++ G F L L + L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 216 QISGTIPSSI-SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
Q+ ++PS + R+ +L +L L+TNQ+ + K+ +L TL+L N+ V
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L L+L N++ L L L +A+N ++ G +L+ L L + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
++ G F RL L L+ NQ+ + ++ L L LSTNQ+ + +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 252 MPDLSTLNLDFNRF 265
+ L T+ L N+F
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215
L +L+ LN+ N + G +L+ L L + NN+++ G F L L + L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 216 QISGTIPSSI-SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
Q+ ++PS + R+ +L +L L+TNQ+ + K+ +L TL+L N+ V
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L L+L N++ L L L +A+N ++ G +L+ L L + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
++ G F RL L L+ NQ+ + ++ L L LSTNQ+ + +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 252 MPDLSTLNLDFNRF 265
+ L T+ L N+F
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG 195
+ LDL NK+S + +L +L +L + DN + G L +L L V +N++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 196 PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDL 255
G F +L L+ L NQ+ P + +LT L L N++ K+ L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 256 STLNLDFNRFSGVIPASL-LTSGVNNLNLSKNSLEGKIPD-AFGPKSYFMVLDLSYNKLS 313
L L N+ V + + + L L N L+ ++P+ AF +L L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN--- 215
Query: 314 GPIPRTLSGTSYIG 327
P T +G Y+
Sbjct: 216 -PWDCTCNGIIYMA 228
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 13/178 (7%)
Query: 92 RTGYMTGFISPAVCKLPHLSSLTLTDWE------GISGEIPRCSTLLPFLRILDLTGNKI 145
++ ++ S A +L L L L D + GI E+ TL +T NK+
Sbjct: 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW-------VTDNKL 97
Query: 146 SGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLH 205
+L L+ L + N + P +L+ L +L + N + G F +L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 206 MLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFN 263
L L NQ+ + ++ L L L NQ+ + + L L L N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 221 IPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTS--GV 278
IPS+I + LDL +N++S + ++ L L L+ N+ +PA + +
Sbjct: 31 IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87
Query: 279 NNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCG 338
L ++ N L+ F L L N+L PR + + YL L +N L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-Q 146
Query: 339 KIPAGSPFDHL 349
+P G FD L
Sbjct: 147 SLPKGV-FDKL 156
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 62/260 (23%)
Query: 127 RCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHL 186
RC L ++ DL K+ ++P ++L++ +N ++ G NL +L L
Sbjct: 28 RCQCHLRVVQCSDLGLEKVPKDLPPDT------ALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 187 DVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQI----- 241
+ NN+IS PG F L L R LS NQ+ +P + + L +L + N+I
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRK 138
Query: 242 ---------------SGPIPAS---------------------------LGKMPDLSTLN 259
+ P+ +S G P L+ L+
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 260 LDFNRFSGVIPASLLTSGVNN---LNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPI 316
LD N+ + V ASL G+NN L LS NS+ + + L L+ NKL +
Sbjct: 199 LDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V 255
Query: 317 PRTLSGTSYIGYLDLSHNNL 336
P L+ YI + L +NN+
Sbjct: 256 PGGLADHKYIQVVYLHNNNI 275
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 62/260 (23%)
Query: 127 RCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHL 186
RC L ++ DL K+ ++P ++L++ +N ++ G NL +L L
Sbjct: 28 RCQCHLRVVQCSDLGLEKVPKDLPPDT------ALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 187 DVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQI----- 241
+ NN+IS PG F L L R LS NQ+ +P + + L +L + N+I
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRK 138
Query: 242 ---------------SGPIPAS---------------------------LGKMPDLSTLN 259
+ P+ +S G P L+ L+
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 260 LDFNRFSGVIPASLLTSGVNN---LNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPI 316
LD N+ + V ASL G+NN L LS NS+ + + L L+ NKL +
Sbjct: 199 LDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V 255
Query: 317 PRTLSGTSYIGYLDLSHNNL 336
P L+ YI + L +NN+
Sbjct: 256 PGGLADHKYIQVVYLHNNNI 275
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIP--GSIGNLSSLMHLDVRNNRISG 195
+D TG + EIPR I LH +L + DN + G I G G L L+ L+++ N+++G
Sbjct: 13 VDCTGRGLK-EIPRDI-PLHTTELL-LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 196 PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDL 255
P F + L N+I +++L L+L NQIS +P S + L
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Query: 256 STLNLDFNRFS 266
++LNL N F+
Sbjct: 129 TSLNLASNPFN 139
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 281 LNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKI 340
L L +N L G P+AF S+ L L NK+ + G + L+L N + +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 341 PAGSPFDHLDA 351
P F+HL++
Sbjct: 119 PGS--FEHLNS 127
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
FG + + L+L N+L+G P G S+I L L N +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
LP +R L L GNK+ + +L L+ L + N + G L++L L + N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
++ G F +L L+ L+ NQ+ ++ LT+LDLS NQ+ K
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 252 MPDLSTLNLDFNRFSGV 268
+ L L L N+ V
Sbjct: 180 LTQLKDLRLYQNQLKSV 196
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 7/145 (4%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPA 271
L GN++ S++ + LT L L+ NQ+ K+ +L L L N+ +P
Sbjct: 70 LGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPD 126
Query: 272 SLLTSGVN--NLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYL 329
+ N LNL+ N L+ F + LDLSYN+L + + L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 330 DLSHNNLCGKIPAGSPFDHLDASSF 354
L N L +P G FD L + +
Sbjct: 187 RLYQNQL-KSVPDGV-FDRLTSLQY 209
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 7/237 (2%)
Query: 102 PAVCKLPHLSSLTLTDWEGISGEIPR-CSTLLPFLRILDLTGNKISGEIPRHIGKLHRLS 160
P+VC + S + G+S E+P+ + +L +++ I + RH LH L
Sbjct: 47 PSVCSCSNQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRH---LHHLE 102
Query: 161 VLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT 220
VL + N + G+ L+SL L++ +N ++ G F L L L N I
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162
Query: 221 IPSSISRVYRLTDLDL-STNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVN 279
+ +RV L LDL ++ + + +L LNL +P G+
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLE 221
Query: 280 NLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
L +S N P +F S L + +++S G + + L+L+HNNL
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPA 271
L+ NQ+ ++ +R +LT LD+ N IS P K+P L LNL N S +
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91
Query: 272 SL-LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314
+ + + L+L NS++ + F + + LDLS+N LS
Sbjct: 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 23/219 (10%)
Query: 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS-------GPIPGCFGRLHMLSRAL 211
L LN+ DN + G L +L +L + N+ S + LH+L+
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN--- 387
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK-MPDLSTLNLDFNRFSGVIP 270
L+ N+IS + S + L LDL N+I + + + ++ + L +N++ +
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447
Query: 271 ASL-LTSGVNNLNLSKNSLEG--KIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIG 327
S L + L L + +L+ P F P +LDLS N ++ L G +
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Query: 328 YLDLSHNNLCGKIPAGSP---------FDHLDASSFESN 357
LDL HNNL +P HL + ESN
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 121 ISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNL 180
+S E+ CS L LT ++ ++P +I +VLN+ N + +
Sbjct: 4 VSHEVADCSHL-------KLT--QVPDDLPTNI------TVLNLTHNQLRRLPAANFTRY 48
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQ 240
S L LDV N IS P +L ML L N++S + + LT+L L +N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 241 ISGPIPASLGKMPDLSTLNLDFNRFSGV 268
I K +L TL+L N S
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT---DLDLS 237
SSL L++ +N+I PGCF + L L+ Q+ ++ + T +L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 238 TNQISGPIPAS-LG-KMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDA 295
+Q+S + LG K +L+ L+L + NNLN+ N +P
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSY----------------NNLNVVGNDSFAWLPQL 274
Query: 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFE 355
YF L YN + +L G + YL+L + I S +D SF+
Sbjct: 275 ----EYFF---LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS-LPKIDDFSFQ 326
Query: 356 SNKCL 360
KCL
Sbjct: 327 WLKCL 331
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 32/231 (13%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
LD+ N IS P KL L VLN+ N +S + ++L L + +N I
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113
Query: 198 PGCFGRLHMLSRALLSGNQISGT-----------------------IPSSISRVY---RL 231
F + L LS N +S T + S ++ L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Query: 232 TDLDLSTNQISGPIPA---SLGKMPDLSTLNLDFN-RFSGVIPASLLTSGVNNLNLSKNS 287
L+LS+NQI P ++G++ L N+ + + L + + NL+LS +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 288 LEGKIPDAF-GPK-SYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
L F G K + +LDLSYN L+ + + + Y L +NN+
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPA 271
L+ NQ+ ++ +R +LT LD+ N IS P K+P L LNL N S +
Sbjct: 37 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 96
Query: 272 SL-LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314
+ + + L+L NS++ + F + + LDLS+N LS
Sbjct: 97 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 23/219 (10%)
Query: 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS-------GPIPGCFGRLHMLSRAL 211
L LN+ DN + G L +L +L + N+ S + LH+L+
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN--- 392
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK-MPDLSTLNLDFNRFSGVIP 270
L+ N+IS + S + L LDL N+I + + + ++ + L +N++ +
Sbjct: 393 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 452
Query: 271 ASL-LTSGVNNLNLSKNSLEG--KIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIG 327
S L + L L + +L+ P F P +LDLS N ++ L G +
Sbjct: 453 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 512
Query: 328 YLDLSHNNLCGKIPAGSP---------FDHLDASSFESN 357
LDL HNNL +P HL + ESN
Sbjct: 513 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 551
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 121 ISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNL 180
+S E+ CS L LT ++ ++P +I +VLN+ N + +
Sbjct: 9 VSHEVADCSHL-------KLT--QVPDDLPTNI------TVLNLTHNQLRRLPAANFTRY 53
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQ 240
S L LDV N IS P +L ML L N++S + + LT+L L +N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 241 ISGPIPASLGKMPDLSTLNLDFNRFSGV 268
I K +L TL+L N S
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT---DLDLS 237
SSL L++ +N+I PGCF + L L+ Q+ ++ + T +L LS
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 235
Query: 238 TNQISGPIPAS-LG-KMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDA 295
+Q+S + LG K +L+ L+L + NNLN+ N +P
Sbjct: 236 NSQLSTTSNTTFLGLKWTNLTMLDLSY----------------NNLNVVGNDSFAWLPQL 279
Query: 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFE 355
YF L YN + +L G + YL+L + I S +D SF+
Sbjct: 280 ----EYFF---LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS-LPKIDDFSFQ 331
Query: 356 SNKCL 360
KCL
Sbjct: 332 WLKCL 336
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 32/231 (13%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
LD+ N IS P KL L VLN+ N +S + ++L L + +N I
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 118
Query: 198 PGCFGRLHMLSRALLSGNQISGT-----------------------IPSSISRVY---RL 231
F + L LS N +S T + S ++ L
Sbjct: 119 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 178
Query: 232 TDLDLSTNQISGPIPA---SLGKMPDLSTLNLDFN-RFSGVIPASLLTSGVNNLNLSKNS 287
L+LS+NQI P ++G++ L N+ + + L + + NL+LS +
Sbjct: 179 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 238
Query: 288 LEGKIPDAF-GPK-SYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
L F G K + +LDLSYN L+ + + + Y L +NN+
Sbjct: 239 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPA 271
L+ NQ+ ++ +R +LT LD+ N IS P K+P L LNL N S +
Sbjct: 42 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 101
Query: 272 SL-LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314
+ + + L+L NS++ + F + + LDLS+N LS
Sbjct: 102 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 23/219 (10%)
Query: 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS-------GPIPGCFGRLHMLSRAL 211
L LN+ DN + G L +L +L + N+ S + LH+L+
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN--- 397
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK-MPDLSTLNLDFNRFSGVIP 270
L+ N+IS + S + L LDL N+I + + + ++ + L +N++ +
Sbjct: 398 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 457
Query: 271 ASL-LTSGVNNLNLSKNSLEG--KIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIG 327
S L + L L + +L+ P F P +LDLS N ++ L G +
Sbjct: 458 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 517
Query: 328 YLDLSHNNLCGKIPAGSP---------FDHLDASSFESN 357
LDL HNNL +P HL + ESN
Sbjct: 518 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 556
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 121 ISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNL 180
+S E+ CS L LT ++ ++P +I +VLN+ N + +
Sbjct: 14 VSHEVADCSHL-------KLT--QVPDDLPTNI------TVLNLTHNQLRRLPAANFTRY 58
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQ 240
S L LDV N IS P +L ML L N++S + + LT+L L +N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 241 ISGPIPASLGKMPDLSTLNLDFNRFSGV 268
I K +L TL+L N S
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT---DLDLS 237
SSL L++ +N+I PGCF + L L+ Q+ ++ + T +L LS
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 240
Query: 238 TNQISGPIPAS-LG-KMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDA 295
+Q+S + LG K +L+ L+L + NNLN+ N +P
Sbjct: 241 NSQLSTTSNTTFLGLKWTNLTMLDLSY----------------NNLNVVGNDSFAWLPQL 284
Query: 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFE 355
YF L YN + +L G + YL+L + I S +D SF+
Sbjct: 285 ----EYFF---LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS-LPKIDDFSFQ 336
Query: 356 SNKCL 360
KCL
Sbjct: 337 WLKCL 341
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
LP +R L L GNK+ + +L L+ L + N + G L++L L + N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
++ G F +L L+ L NQ+ ++ LT LDL NQ+ K
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDK 179
Query: 252 MPDLSTLNLDFNRFSGV 268
+ L L+L+ N+ V
Sbjct: 180 LTQLKQLSLNDNQLKSV 196
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L N++ KL L+ L + N + G L++L LD+ NN++
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
Query: 195 GPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTN 239
G F +L L + L+ NQ+ R+ LT + L N
Sbjct: 171 SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 5/234 (2%)
Query: 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG 195
R+L+L N+I L L +L ++ N++ G+ L++L L++ +NR++
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 196 PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDL-STNQISGPIPASLGKMPD 254
G F L L L N I + +R+ L LDL ++S + + +
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 255 LSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314
L LNL IP ++ L+LS N L P +F + L + +++
Sbjct: 187 LRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 315 PIPRTLSGTSYIGYLDLSHNNLCGKIPAG--SPFDHLDASSFESNKCLCGKPLL 366
+ ++L+HNNL +P +P HL+ N C +L
Sbjct: 246 IERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%)
Query: 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG 195
R+LDL N+I L L + +N VS PG+ NL +L L +R+NR+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 196 PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDL 255
G F L L++ +S N+I + +Y L L++ N + + + L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 256 STLNLD 261
L L+
Sbjct: 155 EQLTLE 160
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 25/201 (12%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
LD++ NKI + L+ L L + DN + + L+SL L + ++
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLS---------------TNQIS 242
LH L L I+ S R+YRL L++S N S
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 243 GPIP-ASLGKMPDLSTLNLDFNRFSGV-------IPASLLTS--GVNNLNLSKNSLEGKI 292
I +L +P L+ +L + RF + I S+L + + L L
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 293 PDAFGPKSYFMVLDLSYNKLS 313
P AF +Y VL++S N+L+
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT 309
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
RA+L + +P I RL LDL N+I P L L L+ N S V
Sbjct: 14 RAVLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 269 IPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIG 327
P + + L L N L+ F S LD+S NK+ + +
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 328 YLDLSHNNL 336
L++ N+L
Sbjct: 132 SLEVGDNDL 140
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 48/129 (37%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L L+L N +S P L L L + N + G LS+L LD+ N
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
+I + F L+ L + N + + S + L L L ++ +L
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 252 MPDLSTLNL 260
+ L L L
Sbjct: 175 LHGLIVLRL 183
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Query: 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS 218
L L + DN + + +L +L HL + NRIS F LH L R LL N+++
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 219 GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGV 278
P + + RL L L N +S +L + L L L+ N + A L + +
Sbjct: 190 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 249
Query: 279 NNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314
S + + +P + + L+ N L G
Sbjct: 250 QKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 282
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 130 TLLPFLRILDLTGN-KISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDV 188
T L L LDL+ N ++ P L RL L++ + PG L++L +L +
Sbjct: 76 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 189 RNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPAS 248
++N + F L L+ L GN+IS + ++ L L L N+++ P +
Sbjct: 136 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 195
Query: 249 LGKMPDLSTLNLDFNRFSGV 268
+ L TL L N S +
Sbjct: 196 FRDLGRLMTLYLFANNLSAL 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Query: 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS 218
L L + DN + + +L +L HL + NRIS F LH L R LL N+++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 219 GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGV 278
P + + RL L L N +S +L + L L L+ N + A L + +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250
Query: 279 NNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314
S + + +P + + L+ N L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 130 TLLPFLRILDLTGN-KISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDV 188
T L L LDL+ N ++ P L RL L++ + PG L++L +L +
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 189 RNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPAS 248
++N + F L L+ L GN+IS + ++ L L L N+++ P +
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 249 LGKMPDLSTLNLDFNRFSGV 268
+ L TL L N S +
Sbjct: 197 FRDLGRLMTLYLFANNLSAL 216
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 221 IPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASL--LTSGV 278
+ +S+ + +L L+ NQ+ G +PA G L++LNL +N+ + IPA+ T V
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQV 379
Query: 279 NNLNLSKNSLEGKIPDAFGPKSYFM--VLDLSYNKL 312
NL+ + N L+ IP+ F KS + +D SYN++
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI 414
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 244 PIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAF-GPKSYF 302
P+ SL K L L +N+ G +PA + +LNL+ N + +IP F G
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQV 379
Query: 303 MVLDLSYNKLSGPIPRTLSG--TSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFE 355
L ++NKL IP S +D S+N + G + G FD LD + F+
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVD-GKNFDPLDPTPFK 431
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 32/239 (13%)
Query: 103 AVCKLPHLSSLTLTD--WEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLS 160
+C++ + SL L + + IS +C T L + LDLT + G +P + L+ L
Sbjct: 247 GLCEMS-VESLNLQEHRFSDISSTTFQCFTQL---QELDLTATHLKG-LPSGMKGLNLLK 301
Query: 161 VLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI-PGCFGRLHMLSRALLSGNQISG 219
L ++ N+ S N SL HL +R N + GC +L L LS N I
Sbjct: 302 KLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA 361
Query: 220 TIPSSIS--RVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSG 277
+ S+ + L L+LS N+ G + + P L L+L F R P S
Sbjct: 362 SDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS----- 416
Query: 278 VNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
F + VL+L+Y L L+G + +L+L N+
Sbjct: 417 -----------------PFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 107 LPHLSSLTLTDWEGI---SGEIPRCSTLLPFLRILDLTGNKISGEIPRH-IGKLHRLSVL 162
L HL +L L+ E + S C P L +LDL ++ P+ LH L VL
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKEC----PQLELLDLAFTRLHINAPQSPFQNLHFLQVL 427
Query: 163 NIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS-GPIP--------GCFGRLHMLSRALLS 213
N+ ++ + L L HL+++ N G I G L + S LLS
Sbjct: 428 NLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLS 487
Query: 214 GNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASL 273
+Q + + +++ +DLS N ++ SL + + LNL N + + P L
Sbjct: 488 IDQ------QAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLL 540
Query: 274 -LTSGVNNLNLSKNSLE 289
+ S + +NLS N L+
Sbjct: 541 PILSQQSTINLSHNPLD 557
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 10/236 (4%)
Query: 111 SSLTLTD--WEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY 168
S L + D + IS P +LP L++L+L N++S + L+ L++ N
Sbjct: 49 SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS 108
Query: 169 VSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRV 228
+ N +L+ LD+ +N +S G +L L LL+ N+I + +
Sbjct: 109 IHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFL 168
Query: 229 --YRLTDLDLSTNQISGPIP---ASLGKMPDLSTLNLDFN-RFSGVIPASLLTSGVNNLN 282
L LDLS+N + P ++GK+ L N N + + L + + NL+
Sbjct: 169 GNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLS 228
Query: 283 LSKNSLEGKIPDAFGPKSY--FMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
L+ N L F + LDLSYN L + S + YL L +NN+
Sbjct: 229 LANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 105/286 (36%), Gaps = 45/286 (15%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTG--NKISGEIPRH-------IGKLH 157
LP L L+L ++ I PR L LR L L K S + H L
Sbjct: 271 LPSLRYLSL-EYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLK 329
Query: 158 RLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL------ 211
L LN+ DN + + L SL +L + F L L+
Sbjct: 330 YLEYLNMDDNNIPSTKSNTFTGLVSLKYLS---------LSKTFTSLQTLTNETFVSLAH 380
Query: 212 -------LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK-MPDLSTLNLDFN 263
L+ N IS + S + +L LDL N+I + + + ++ + L +N
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 264 RFSGVIPASL-LTSGVNNLNLSKNSLEGK--IPDAFGPKSYFMVLDLSYNKLSGPIPRTL 320
++ + +S L + L L + +L+ P F P +LDLS N ++ L
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Query: 321 SGTSYIGYLDLSHNNLCGKIPAGSP---------FDHLDASSFESN 357
G + LD HNNL +P HL + ESN
Sbjct: 501 EGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESN 546
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 44/197 (22%)
Query: 177 IGNLSSLMHLDVRNNRISGPIPGCF---GRLHML------------------------SR 209
+GN SSL LD+ +N + PGCF G+L L
Sbjct: 168 LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 210 ALLSGNQISGTIPSSIS--RVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSG 267
L+ NQ+ T S+ S + LT LDLS N + S +P L L+L++N
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 268 VIPASLLTSGVNNLN-------LSKNSL----EGKIPD-AFGPKSYFMVLDLSYNKLSGP 315
+ P S G++NL +K S+ I D +F Y L++ N +
Sbjct: 287 LSPRSFY--GLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
Query: 316 IPRTLSGTSYIGYLDLS 332
T +G + YL LS
Sbjct: 345 KSNTFTGLVSLKYLSLS 361
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 43/110 (39%)
Query: 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS 218
++VLN+ N + P + S L LD N IS P L +L L N++S
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 219 GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
+ LT+LDL +N I +L L+L N S
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 274 LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSH 333
L S + LNL+ N L P F S +LD +N +S P + L+L H
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 334 NNL 336
N L
Sbjct: 83 NEL 85
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 23/224 (10%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
++ LDL+GN +S + +L +LN++ N + + + +LS+L LD+ NN +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93
Query: 195 GPIPG-CFGRLHM----LSRALLSGNQISGTIPSSISRVYRLTD-----------LDLST 238
+ G LH +SR S Q I + +++ L D LDL
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 239 NQISGPIPASLGKMPD-LSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFG 297
N+I A L D L LNL +N F + ++ + + L+LS N L P+ F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQ 211
Query: 298 PKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL-CGKI 340
+ + L NKL I + L + + + DL N CG +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 121 ISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNL 180
++ I RC L P +++LDL NKI IP+ + KL L LN+A N + G L
Sbjct: 411 LTDTIFRC--LPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQ 216
+SL + + N P R+ LSR L +Q
Sbjct: 468 TSLQKIWLHTNPWDCSCP----RIDYLSRWLNKNSQ 499
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 32/196 (16%)
Query: 159 LSVLNIADNYVSGPIPGSI---GNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215
S +NI + VSG + +S +HLD NN ++ + G L L +L N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 216 QIS--GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASL 273
Q+ I +++ L LD+S N +S K D S
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYD-----EKKGDCS----------------- 396
Query: 274 LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSH 333
T + +LN+S N L I P+ VLDL NK+ IP+ + + L+++
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKS-IPKQVVKLEALQELNVAS 453
Query: 334 NNLCGKIPAGSPFDHL 349
N L +P G FD L
Sbjct: 454 NQL-KSVPDG-IFDRL 467
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 149 IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208
+P+ + + + ++LNI+ NY+S I +LS L L + +NRI F L
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISG-PIPASLGKMPDLSTLNLDFNRF-- 265
LS N++ + S L LDLS N PI G M L L L
Sbjct: 73 YLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 266 SGVIPASLLTSGVNNLNLSK 285
S V+P + +LN+SK
Sbjct: 130 SSVLP-------IAHLNISK 142
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 137 ILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVS-GPIPGSIGNLSSLMHLDVRNNRISG 195
IL + K +I ++ L L+I+ N VS G SL+ L++ +N ++
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 196 PIPGCFG-RLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPD 254
I C R+ +L L N+I +IP + ++ L +L++++NQ+ ++
Sbjct: 414 TIFRCLPPRIKVLD---LHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 255 LSTLNLDFN 263
L + L N
Sbjct: 470 LQKIWLHTN 478
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ NQ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN+++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ NQ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN+++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ NQ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN+++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ NQ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN+++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 23/224 (10%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
++ LDL+GN +S + +L +LN++ N + + + +LS+L LD+ NN +
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93
Query: 195 GPIPG-CFGRLHM----LSRALLSGNQISGTIPSSISRVYRLTD-----------LDLST 238
+ G LH +SR S Q I + +++ L D LDL
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 239 NQISGPIPASLGKMPD-LSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFG 297
N+I A L D L LNL +N F + ++ + + L+LS N L P+ F
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQ 211
Query: 298 PKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL-CGKI 340
+ + L NKL I + L + + + DL N CG +
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 63/168 (37%)
Query: 96 MTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGK 155
+ G + A L L L L+D + P L L L L + P
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG 126
Query: 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215
L L L + DN + + +L +L HL + NRI F LH L R LL N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 216 QISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFN 263
++ P + + RL L L N +S L + L L L+ N
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 130 TLLPFLRILDLTGNK----ISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMH 185
T L L LDL+ N + R +G LH L + + PG L++L +
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG---PGLFRGLAALQY 132
Query: 186 LDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPI 245
L +++N + F L L+ L GN+I + ++ L L L N ++
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 246 PASLGKMPDLSTLNLDFNRFSGVIPASLLT 275
P + + L TL L N S ++PA +L
Sbjct: 193 PHAFRDLGRLMTLYLFANNLS-MLPAEVLV 221
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 121 ISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNL 180
++G + RC L P +++LDL N+I IP+ + L L LN+A N + G L
Sbjct: 440 LTGSVFRC--LPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 181 SSLMHLDVRNNRISGPIPG 199
+SL ++ + +N PG
Sbjct: 497 TSLQYIWLHDNPWDCTCPG 515
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG-NLSSLMHLDVRNNRI 193
L+ LDL+ N + +G L +L L+ + + S+ +L +L++LD+ +
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 194 SGPIPGCFGRLHMLSRALLSGNQISGT-IPSSISRVYRLTDLDLSTNQISGPIPASLGKM 252
G F L L ++GN +P + + LT LDLS Q+ P + +
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 253 PDLSTLNLDFNRF 265
L LN+ N F
Sbjct: 518 SSLQVLNMSHNNF 530
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 276 SGVNNLNLSKNSL-EGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334
S + L ++ NS E +PD F LDLS +L P + S + L++SHN
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 335 NL 336
N
Sbjct: 529 NF 530
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG-NLSSLMHLDVRNNRI 193
L+ LDL+ N + +G L +L L+ + + S+ +L +L++LD+ +
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 194 SGPIPGCFGRLHMLSRALLSGNQISGT-IPSSISRVYRLTDLDLSTNQISGPIPASLGKM 252
G F L L ++GN +P + + LT LDLS Q+ P + +
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 253 PDLSTLNLDFNRF 265
L LN+ N F
Sbjct: 199 SSLQVLNMSHNNF 211
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSISRVYRLTDLDLST 238
SS L++ +N++ G F +L L++ LS N +S G S L LDLS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 239 NQISGPIPAS------------------LGKMPDLST-------LNLDFNRFSGVIPASL 273
N G I S L +M + S + LD + + +
Sbjct: 88 N---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 274 LTSGVNNLNLSK---NSL-EGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYL 329
+ +G+++L + K NS E +PD F LDLS +L P + S + L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 330 DLSHNNL 336
++SHNN
Sbjct: 205 NMSHNNF 211
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 276 SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLS--GPIPRTLSGTSYIGYLDLSH 333
S L L N L+ F + L LS N LS G ++ GT+ + YLDLS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 334 NNLCGKIPAGSPF------DHLD 350
N G I S F +HLD
Sbjct: 88 N---GVITMSSNFLGLEQLEHLD 107
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG-NLSSLMHLDVRNNRI 193
L+ LDL+ N + +G L +L L+ + + S+ +L +L++LD+ +
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 194 SGPIPGCFGRLHMLSRALLSGNQISGT-IPSSISRVYRLTDLDLSTNQISGPIPASLGKM 252
G F L L ++GN +P + + LT LDLS Q+ P + +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 253 PDLSTLNLDFNRF 265
L LN+ N F
Sbjct: 494 SSLQVLNMSHNNF 506
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 276 SGVNNLNLSKNSL-EGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334
S + L ++ NS E +PD F LDLS +L P + S + L++SHN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 335 NL 336
N
Sbjct: 505 NF 506
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 27/235 (11%)
Query: 127 RCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHL 186
R L L++L+L NKI+ L L VLN++ N + + L + ++
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 187 DVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT--IPS------SISRVYRLTDLDLST 238
D++ N I+ F L L L N ++ IPS S +++ L ++L+
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 239 NQI--------SGPIPASLGKMPDLSTLNLDFNRFSGV----IPASLLTSGVNNLNLSKN 286
N I + I L ++P L L L+ NRFS P+ + L L +N
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--NPSLEQLFLGEN 461
Query: 287 SLEGKIP-----DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
L+ D F S+ VL L++N L+ P S + + L L+ N L
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 97/258 (37%), Gaps = 60/258 (23%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI--PGSIGNLSSLMHLDVR 189
LP LRILDL +KI P L L L + +S + G NL +L LD+
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 190 NNRI-SGPIPGCFGRLHMLSRALLSGNQI----------------------SGTIPSSIS 226
N+I S + FG+L+ L S NQI + ++ S +S
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 227 ----------RVYRLTDLDLSTN----QISGPIPASLGKMPDLSTL-------------- 258
R L LD+S N I+G ++ K S +
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251
Query: 259 --NLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPI 316
+ D N F+G L S V +L+LS + F VL+L+YNK++
Sbjct: 252 IKDPDQNTFAG-----LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 317 PRTLSGTSYIGYLDLSHN 334
G + L+LS+N
Sbjct: 307 DEAFYGLDNLQVLNLSYN 324
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 39/154 (25%)
Query: 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215
L L VL + NY++ PG +L++L L + +NR++ +LS N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT----------------VLSHN 522
Query: 216 QISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT 275
+ L LD+S NQ+ P P LS L++ N+F I L+
Sbjct: 523 DLPAN----------LEILDISRNQLLAPNP---DVFVSLSVLDITHNKF---ICECELS 566
Query: 276 SGVNNLNLSKNSLEG-------KIPDAFGPKSYF 302
+ +N LN + ++ G PD+F S F
Sbjct: 567 TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF 600
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
+R LDL+ + R L L VLN+A N ++ + L +L L++ N +
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 195 GPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPD 254
F L ++ L N I+ + + +L LDL N ++ ++ +P
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPS 382
Query: 255 LSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEG 290
+ + L N+ +P LT+ N ++LS+N LE
Sbjct: 383 IPDIFLSGNKLV-TLPKINLTA--NLIHLSENRLEN 415
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 168 YVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISR 227
Y G G + +LD+ N + G F L L++ L GN++ ++
Sbjct: 15 YSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74
Query: 228 VYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT--SGVNNLNLSK 285
+ LT L+LSTNQ+ K+ L L L+ N+ +P + + + +L L +
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQ 133
Query: 286 NSLEGKIPDA 295
N L+ +PD
Sbjct: 134 NQLKS-VPDG 142
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 53/134 (39%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
LDL N + +L L+ L + N + G L+SL +L++ N++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLST 257
G F +L L L+ NQ+ ++ +L DL L NQ+ ++ L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 258 LNLDFNRFSGVIPA 271
+ L N + P
Sbjct: 153 IWLHDNPWDCTCPG 166
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L L L GNK+ KL L+ LN++ N + G L+ L L + N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
++ G F +L L L NQ+ R+ L + L N P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG---- 166
Query: 252 MPDLSTLNLDFNRFSGVI 269
+ L+ N+ SGV+
Sbjct: 167 ---IRYLSEWINKHSGVV 181
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 155 KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214
KL +L +N ++N ++ G+ S + + + +NR+ F L L +L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266
N+I+ S + + L L NQI+ P + + LSTLNL N F+
Sbjct: 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 140 LTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPG 199
LT N++ + L L L + N ++ S LSS+ L + +N+I+ PG
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 200 CFGRLHMLSRALLSGN 215
F LH LS L N
Sbjct: 148 AFDTLHSLSTLNLLAN 163
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 143 NKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFG 202
NKI IP++ +L RL+ + + G L L ++ NN+I+ G F
Sbjct: 24 NKIPEHIPQYTAEL-RLN----NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78
Query: 203 RLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262
++ LL+ N++ + L L L +N+I+ S + + L+L
Sbjct: 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138
Query: 263 NRFSGVIPASLLT-SGVNNLNLSKN 286
N+ + V P + T ++ LNL N
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG 219
+L + DN ++ PG +L +L L + +N++ G F L L+ L NQ++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 220 TIPSSI-SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
+PS++ R+ L +L + N+++ +P + ++ L+ L LD N+ +
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSI-SRVYRL 231
+P I + +++L +N+I+ PG F L L L NQ+ G +P + + +L
Sbjct: 34 VPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQL 90
Query: 232 TDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGK 291
T LDL TNQ++ A ++ L L + N+ + + + + +L L +N L+
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI 150
Query: 292 IPDAF 296
AF
Sbjct: 151 PHGAF 155
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L +LDL N+++ +L L L + N ++ +P I L+ L HL + N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 192 RISGPIPGCFGRLHMLSRALLSGN 215
++ G F RL L+ A L GN
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ N ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN ++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ N ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN ++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ N ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN ++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232
+P I + +++L +NRI+ PG F RL L+R L NQ++ ++ +LT
Sbjct: 24 VPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 233 DLDLSTNQI 241
L L+ NQ+
Sbjct: 82 QLSLNDNQL 90
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG 219
VL + DN ++ PG L+ L LD+ NN+++ G F +L L++ L+ NQ+
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 220 TIPSSISRVYRLTDLDLSTN 239
+ + LT + L N
Sbjct: 93 IPRGAFDNLRSLTHIWLLNN 112
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
L N+I+ P R+ +LT LDL NQ++ K+ L+ L+L+ N+ +
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L LDL N+++ KL +L+ L++ DN + G+ NL SL H+ + NN
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQ 240
SS L++ +N++ G F +L L++ LS NQI ++ +LT L L N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 241 ISGPIPASLGKMPDLSTLNLDFNRFSGV 268
+ K+ L L LD N+ V
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSV 115
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
L+L NK+ KL +L+ L+++ N + G L+ L L + N++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTN 239
G F +L L L NQ+ R+ L + L TN
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 42/109 (38%)
Query: 162 LNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTI 221
L + N + G L+ L L + N+I G F +L L+ L N++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 222 PSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIP 270
++ +L +L L TNQ+ ++ L + L N + P
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 107
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ N ++
Sbjct: 108 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 167
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 168 LLNGLENLDTLLLQENSLYTI 188
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 186
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 187 TIPKGFFGS-HLLPFAFLHGN 206
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 77 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN ++ G L L LL N + TIP
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 190
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ N ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN ++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV-SGPIPGSIGNLSSLMHLD 187
+TL+P+ R+ L ++ + G L L L+++ N + S P+ G L +L LD
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLD 106
Query: 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247
V NR++ G L L L GN++ P ++ +L L L+ N ++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 248 SLGKMPDLSTLNLDFNRFSGV 268
L + +L TL L N +
Sbjct: 167 LLNGLENLDTLLLQENSLYTI 187
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LP L +L L+ + S +P LP L +LD++ N+++ + L L L +
Sbjct: 76 LPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS 223
N + PG + L L + NN ++ G L L LL N + TIP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ L L GN++ P + +L L++A+N ++ G + L +L L ++ N +
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G FG H+L A L GN
Sbjct: 186 TIPKGFFGS-HLLPFAFLHGN 205
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG-NLSSLMHLDVRNNRI 193
L+ LDL+ N + +G L +L L+ + + S+ +L +L++LD+ +
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 194 SGPIPGCFGRLHMLSRALLSGNQISGT-IPSSISRVYRLTDLDLSTNQISGPIPASLGKM 252
G F L L ++GN +P + + LT LDLS Q+ P + +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 253 PDLSTLNLDFNRFSGV 268
L LN+ N+ V
Sbjct: 494 SSLQVLNMASNQLKSV 509
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 135 LRILDLTGNKISGE-IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRI 193
L +L + GN +P +L L+ L+++ + P + +LSSL L++ +N++
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 194 SGPIPGCFGRLHMLSRALLSGN 215
G F RL L + L N
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTN 528
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQIS 242
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 110 LSSLTLTDWEGISGE---IPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166
LSSL + G S + +P T L L LDL+ ++ P L L VLN+A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 167 NYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQ 216
N + G L+SL + + N P R+ LSR L +Q
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP----RIDYLSRWLNKNSQ 549
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRH-IGKLHRLSVLNIA 165
L HL SL L+ E +S + P L +LDL ++ + + LH L VLN++
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
Query: 166 DNYVSGPIPGSIGNLSSLMHLDVRNNRI-SGPIPG-----CFGRLHMLSRALLSGNQISG 219
+ + L +L HL+++ N G I GRL +L +LS +S
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL---VLSFCDLSS 490
Query: 220 TIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASL-LTSGV 278
+ + + + +DLS N+++ +L + + LNL N S ++P+ L + S
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549
Query: 279 NNLNLSKNSLE 289
+NL +N L+
Sbjct: 550 RTINLRQNPLD 560
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 33/234 (14%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ LDLT +S E+P + L L L ++ N S N SL HL ++ N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 195 GPI-PGCFGRLHMLSRALLSGNQI--SGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251
+ GC L L LS + I S + + L L+LS N+ + +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 252 MPDLSTLNLDFNR---------FSGV--------------IPASLLTSG---VNNLNLSK 285
P L L+L F R F + I + L G + +LNL
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 286 NSL-EGKIP--DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
N +G I ++ +L LS+ LS + + ++DLSHN L
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG 219
VL + DN ++ PG L+ L LD+ NN+++ G F +L L++ L+ NQ+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 220 TIPSSISRVYRLTDLDLSTN 239
+ + LT + L N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232
+P I + +++L +N+I+ PG F RL L+R L NQ++ ++ +LT
Sbjct: 24 VPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 233 DLDLSTNQI 241
L L+ NQ+
Sbjct: 82 QLSLNDNQL 90
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
L NQI+ P R+ +LT LDL NQ++ K+ L+ L+L+ N+ +
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L LDL N+++ KL +L+ L++ DN + G+ NL SL H+ + NN
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 254 DLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKL 312
D++ L LD N+F+ ++P L + ++LS N + +F + + L LSYN+L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 313 SGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASS 353
PRT G + L L H N +P G+ F+ L A S
Sbjct: 91 RCIPPRTFDGLKSLRLLSL-HGNDISVVPEGA-FNDLSALS 129
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 207 LSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266
++ L GNQ + +P +S LT +DLS N+IS S M L TL L +NR
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 267 GVIPASLLTSGVNNLNL 283
+ P + G+ +L L
Sbjct: 92 CIPPRTF--DGLKSLRL 106
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 138 LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI 197
L L GN+ + +P+ + L+++++++N +S S N++ L+ L + NR+
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTN 239
P F L L L GN IS + + + L+ L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 127 RCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGP----IPGSIGNLSS 182
RC T L + NK +P+ I + ++ + Y+ G +P + N
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKVLPKGIPR-------DVTELYLDGNQFTLVPKELSNYKH 55
Query: 183 LMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQIS 242
L +D+ NNRIS F + L +LS N++ P + + L L L N IS
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 243 GPIPASLGKMPDLSTL 258
+P G DLS L
Sbjct: 116 -VVPE--GAFNDLSAL 128
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L ++DL+ N+IS + + +L L ++ N + P + L SL L + N IS
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 195 GPIPGCFGRLHMLSRALLSGN 215
G F L LS + N
Sbjct: 116 VVPEGAFNDLSALSHLAIGAN 136
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG 219
VL + DN ++ PG L+ L LD+ NN+++ G F +L L++ L+ NQ+
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 220 TIPSSISRVYRLTDLDLSTN 239
+ + LT + L N
Sbjct: 101 IPRGAFDNLKSLTHIWLLNN 120
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232
+P I + +++L +N+I+ PG F RL L+R L NQ++ ++ +LT
Sbjct: 32 VPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 89
Query: 233 DLDLSTNQI 241
L L+ NQ+
Sbjct: 90 QLSLNDNQL 98
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
L NQI+ P R+ +LT LDL NQ++ K+ L+ L+L+ N+ +
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L LDL N+++ KL +L+ L++ DN + G+ NL SL H+ + NN
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232
+P I ++L LD++NN IS F L L +L N+IS + S + +L
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 233 DLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLN---LSKNSLE 289
L +S N + IP +L L L + NR V P + SG+ N+N + N LE
Sbjct: 106 KLYISKNHLV-EIPPNLPS--SLVELRIHDNRIRKV-PKGVF-SGLRNMNCIEMGGNPLE 160
Query: 290 --GKIPDAF-GPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336
G P AF G K + L +S KL+G IP+ L T + L L HN +
Sbjct: 161 NSGFEPGAFDGLKLNY--LRISEAKLTG-IPKDLPET--LNELHLDHNKI 205
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 73/188 (38%), Gaps = 50/188 (26%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L L L NKIS + L +L L I+ N++ IP ++ SSL+ L + +N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDN 133
Query: 192 RI--------------------------SGPIPGCFGRLHM----LSRALLSG------- 214
RI SG PG F L + +S A L+G
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE 193
Query: 215 ---------NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRF 265
N+I + R +L L L NQI SL +P L L+LD N+
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
Query: 266 SGVIPASL 273
S V PA L
Sbjct: 254 SRV-PAGL 260
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 137 ILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGP 196
I+D G ++ EIP ++ + ++ + + N + PG+ L +D+ NN+IS
Sbjct: 15 IVDCRGKGLT-EIPTNLPET--ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 197 IPGCFGRLHMLSRALLSGNQISGTIPSSI 225
P F L L+ +L GN+I+ +P S+
Sbjct: 72 APDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 274 LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSH 333
L + + L +N+++ P AF P +DLS N++S P G + L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 334 NNL 336
N +
Sbjct: 90 NKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 137 ILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGP 196
I+D G ++ EIP ++ + ++ + + N + PG+ L +D+ NN+IS
Sbjct: 15 IVDCRGKGLT-EIPTNLPET--ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 197 IPGCFGRLHMLSRALLSGNQISGTIPSSI 225
P F L L+ +L GN+I+ +P S+
Sbjct: 72 APDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 274 LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSH 333
L + + L +N+++ P AF P +DLS N++S P G + L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 334 NNL 336
N +
Sbjct: 90 NKI 92
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 97/264 (36%), Gaps = 51/264 (19%)
Query: 97 TGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKL 156
TG PA C + +S + ++ E+P +++ R L+L N I L
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELA-EVP--ASIPVNTRYLNLQENSIQVIRTDTFKHL 58
Query: 157 HRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQ 216
L +L ++ N V G+ L SL L++ +NR++ F L L L N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 217 ISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNL-DFNR--------FSG 267
I +IPS + ++P L L+L + R F G
Sbjct: 119 IE-SIPS-----------------------YAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 268 VIPASLLTSGVNN---------------LNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKL 312
++ L G+ N L LS N L+ P +F + L L + ++
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 313 SGPIPRTLSGTSYIGYLDLSHNNL 336
+ + L+LSHNNL
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ LDL+ +I + LH LS L + N + PGS L+SL +L +++
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 112
Query: 195 GPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQIS 242
G+L L + ++ N I S +P+ S + L +DLS N I
Sbjct: 113 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 176 SIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLD 235
S N S L LD+ I + LH LS +L+GN I P S S + L +L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 236 LSTNQISGPIPASLGKMPDLSTLNLDFN 263
+++ +G++ L LN+ N
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHN 133
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 156 LHRLSVLNIADN-YVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214
L L+ L +A N + + N ++L LD+ ++ G F LH L +S
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 215 NQISGTIPSSISRVYRLTDLDLSTNQIS 242
N + S +++Y L+ LD S N+I
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L+ LDL+ +I + LH LS L + N + PGS L+SL +L +++
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 195 GPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQIS 242
G+L L + ++ N I S +P+ S + L +DLS N I
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 176 SIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLD 235
S N S L LD+ I + LH LS +L+GN I P S S + L +L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 236 LSTNQISGPIPASLGKMPDLSTLNLDFN 263
+++ +G++ L LN+ N
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHN 138
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 156 LHRLSVLNIADN-YVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214
L L+ L +A N + + N ++L LD+ ++ G F LH L +S
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 215 NQISGTIPSSISRVYRLTDLDLSTNQIS 242
N + S +++Y L+ LD S N+I
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 97/264 (36%), Gaps = 51/264 (19%)
Query: 97 TGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKL 156
TG PA C + +S + ++ E+P +++ R L+L N I L
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELA-EVP--ASIPVNTRYLNLQENSIQVIRTDTFKHL 58
Query: 157 HRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQ 216
L +L ++ N V G+ L SL L++ +NR++ F L L L N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 217 ISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNL-DFNR--------FSG 267
I +IPS + ++P L L+L + R F G
Sbjct: 119 IE-SIPS-----------------------YAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 268 VIPASLLTSGVNN---------------LNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKL 312
++ L G+ N L LS N L+ P +F + L L + ++
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 313 SGPIPRTLSGTSYIGYLDLSHNNL 336
+ + L+LSHNNL
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232
+P I + ++HL + N+I+ PG F L L+ L+ NQ++ ++ +LT
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 233 DLDLSTNQISGPIPASLGKMPDLSTL 258
L L NQ+ IP +G +L +L
Sbjct: 92 HLALHINQLKS-IP--MGVFDNLKSL 114
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG 195
++L L N+I+ P L +L+ LN+A N ++ G L+ L HL + N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 196 PIPGCFGRLHMLSRALLSGN 215
G F L L+ L N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQI 217
VL++ N ++ PG +L+ L +L++ N+++ G F +L L+ L NQ+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
P L++LDL+ +I L LS L + N + G+ LSSL L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 192 RISGPIPGCFGRLHMLSRALLSGNQI-SGTIPSSISRVYRLTDLDLSTNQISG 243
++ G L L ++ N I S +P S + L LDLS+N+I
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 22/222 (9%)
Query: 127 RCSTLLPFLRILDLTGNKISGE--IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLM 184
RC L L+ LDL+ + I + L L LN++ N G + L
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLE 402
Query: 185 HLDVRNNRISGPIPGC-FGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQIS- 242
LDV + P F LH+L LS + + ++ + L L+L N
Sbjct: 403 LLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 243 GPIPAS-----LGKMPDL-----STLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKI 292
G I + +G + L + L++D F G+ VN+L+LS NSL G
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGL-------RNVNHLDLSHNSLTGDS 515
Query: 293 PDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334
DA + L+++ N + P L S ++LSHN
Sbjct: 516 MDALSHLKG-LYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG 219
VL + N++ + L +L+ LD+ +I+ F H L+ +L+GN +
Sbjct: 35 EVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIF 94
Query: 220 TIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV-IPASLLTSGV 278
+S++ L L L+ IS + + +L +L+L N S + +P + T +
Sbjct: 95 MAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNL 154
Query: 279 NNLNLSKNSL 288
L+ N++
Sbjct: 155 KVLDFQNNAI 164
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 11/172 (6%)
Query: 171 GPIPGSIGNLSSL--------MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIP 222
G GS G+L+S+ LD+ NNRI+ R L +L+ N I+
Sbjct: 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 223 SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT--SGVNN 280
S S + L LDLS N +S + + L+ LNL N + + SL + + +
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 281 LNLSKNSLEGKIPDA-FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDL 331
L + KI F ++ L++ + L P++L + +L L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDV 188
S L ++ LDL+ N+I+ + + L L + N ++ S +L SL HLD+
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 189 RNNRISGPIPGCFGRLHMLSRALLSGN 215
N +S F L L+ L GN
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 184 MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISG 243
L + NN+I+ PG F L L + + N+++ ++ +LT LDL+ N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 135 LRILDLTGNKISGEIPRHI-GKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L+ L NK++ IP + KL +L+ L++ DN++ G+ NL SL H+ + NN
Sbjct: 59 LQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 170 SGPIPGSIGNLSSL--------MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTI 221
+G GS G+L+S+ LD+ NNRI+ R L +L+ N I+
Sbjct: 7 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 66
Query: 222 PSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT--SGVN 279
S S + L LDLS N +S + + L+ LNL N + + SL + + +
Sbjct: 67 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 126
Query: 280 NLNLSKNSLEGKIPDA-FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDL 331
L + KI F ++ L++ + L P++L + +L L
Sbjct: 127 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 31/160 (19%)
Query: 124 EIPRCSTLLP-FLRILDLTGNKIS----GEIPRHIGKLHRLSVLNIADNYVSG----PIP 174
++P LP + +LDL+ N +S P + LH L + + N++S P+P
Sbjct: 29 QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88
Query: 175 GS-----------------IGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQI 217
+L +L L + NN I F + L + LS NQI
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 218 SGTIPSSI----SRVYRLTDLDLSTNQISGPIPASLGKMP 253
S P + +++ +L LDLS+N++ L K+P
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 235 DLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLL-TSGVNNLNLSKNSLEGKIP 293
DLS ++I + + DL L L N + + + + + LNLS+N L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 294 DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSH----NNLCGKIPAGSPFDHL 349
F VLDLSYN + R L S++G +L N +P G FD L
Sbjct: 341 RMFENLDKLEVLDLSYNHI-----RALGDQSFLGLPNLKELALDTNQLKSVPDG-IFDRL 394
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 42/106 (39%)
Query: 163 NIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIP 222
+++ + + + + + L L + N I+ F L L + LS N +
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 223 SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268
+ +L LDLS N I S +P+L L LD N+ V
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191
L L L+L+ N + R L +L VL+++ N++ S L +L L + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 192 RISGPIPGCFGRLHMLSRALLSGN 215
++ G F RL L + L N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 149 IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208
+P I L L L I ++ +S P +I +L L LD+R P FG L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253
R +L T+P I R+ +L LDL +P+ + ++P
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 95 YMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTL--LPFLRILDLTGNKISGEIPRH 152
Y T +++ P + L + + +I S L L L L++ N+IS
Sbjct: 203 YFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INA 260
Query: 153 IGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212
+ L +L LN+ N +S + NLS L L + NN++ G L L+ L
Sbjct: 261 VKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Query: 213 SGNQISGTIP-SSISR 227
S N I+ P +S+S+
Sbjct: 319 SQNHITDIRPLASLSK 334
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS 194
L L +T +K+ P I L L L++ N + P + +L+SL + N+I+
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212
Query: 195 GPIP-GCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253
P RL+ L + N+I+ P ++ + +LT L++ TNQIS ++ +
Sbjct: 213 DITPVANXTRLNSLK---IGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLT 265
Query: 254 DLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLS 313
L LN+ N+ S + + L S +N+L L+ N L + + G + L LS N ++
Sbjct: 266 KLKXLNVGSNQISDISVLNNL-SQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Query: 314 GPIP 317
P
Sbjct: 325 DIRP 328
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPA 271
L+GNQI+ P +S + +LT+L + TN+I+ ++L + +L L L+ + S + P
Sbjct: 73 LNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPL 128
Query: 272 SLLT 275
+ LT
Sbjct: 129 ANLT 132
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 152 HIGKLHRLSVLNIADN----------YVSG----PIPGSIGNLSSLMHLDVRNNRISGPI 197
H L L + NI+ N Y++G +P I NLS+L LD+ +NR++ +
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 198 PGCFGRLHMLSRALLSGNQISGTIP 222
P G L N ++ T+P
Sbjct: 286 PAELGSCFQLKYFYFFDNMVT-TLP 309
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 135 LRILDLTGNKIS----GEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRN 190
++ LDL+ NKI+ G++ R L L + + N + G S+G SL HLD+ +
Sbjct: 54 MKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSD 109
Query: 191 NRISGPIPGCFGRLHMLSRALLSGN 215
N +S FG L L L GN
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 135 LRILDLTGNKIS----GEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRN 190
++ LDL+ NKI+ G++ R L L + + N + G S+G SL HLD+ +
Sbjct: 28 MKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSD 83
Query: 191 NRISGPIPGCFGRLHMLSRALLSGN 215
N +S FG L L L GN
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 64 VSCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTD 117
++ +P+T ++ + + DP+ H + ++PH S LTL D
Sbjct: 22 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLED 75
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 18/219 (8%)
Query: 157 HRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQ 216
H + L + N + P N+ L L + N +S G F L+ +S N
Sbjct: 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152
Query: 217 ISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV---IPASL 273
+ + L +L LS+N+++ L +P L N+ +N S + I
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEE 209
Query: 274 LTSGVNNLNLSKNSL----------EGKIPDAFGPKSY--FMVLDLSYNKLSGPIPRTLS 321
L + N++N+ + + + D +Y + +DLSYN+L +
Sbjct: 210 LDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 322 GTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCL 360
+ L +S+N L G P L N L
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,268,893
Number of Sequences: 62578
Number of extensions: 474942
Number of successful extensions: 1581
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 358
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)