Query 037720
Match_columns 369
No_of_seqs 401 out of 4496
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.9E-42 8.5E-47 360.1 25.1 328 26-359 26-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-33 3.2E-38 295.5 18.8 269 94-364 342-611 (968)
3 KOG4194 Membrane glycoprotein 99.9 8E-29 1.7E-33 228.6 1.4 288 70-359 124-428 (873)
4 KOG4194 Membrane glycoprotein 99.9 3E-28 6.5E-33 224.8 2.1 271 94-365 183-457 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.3E-26 7.2E-31 213.0 -5.0 262 94-363 88-378 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-25 2.6E-30 209.3 -4.8 253 99-358 46-302 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.4E-25 7.4E-30 196.6 -11.5 250 99-359 59-309 (565)
8 KOG0472 Leucine-rich repeat pr 99.8 1.4E-23 3.1E-28 186.3 -8.1 257 94-360 192-541 (565)
9 PLN03210 Resistant to P. syrin 99.8 3.2E-19 6.8E-24 188.8 21.9 249 99-359 625-905 (1153)
10 PRK15370 E3 ubiquitin-protein 99.8 1.7E-19 3.6E-24 180.0 17.4 224 108-359 199-427 (754)
11 KOG4237 Extracellular matrix p 99.8 3.1E-22 6.6E-27 177.5 -6.2 271 94-365 77-364 (498)
12 PLN03210 Resistant to P. syrin 99.8 2.8E-18 6.1E-23 181.6 20.2 245 100-357 580-856 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-21 3.1E-26 179.7 -4.2 260 99-359 14-319 (319)
14 PRK15387 E3 ubiquitin-protein 99.8 1.7E-18 3.7E-23 172.1 15.5 163 158-341 283-462 (788)
15 KOG0618 Serine/threonine phosp 99.8 4.5E-21 9.8E-26 186.1 -6.7 242 108-359 219-488 (1081)
16 PRK15370 E3 ubiquitin-protein 99.8 2.5E-18 5.5E-23 171.6 11.0 216 94-337 209-428 (754)
17 cd00116 LRR_RI Leucine-rich re 99.8 4.5E-20 9.7E-25 169.8 -2.5 251 72-336 24-319 (319)
18 KOG0617 Ras suppressor protein 99.7 2.1E-20 4.5E-25 148.3 -6.8 165 103-274 28-193 (264)
19 PRK15387 E3 ubiquitin-protein 99.7 6.9E-17 1.5E-21 160.7 15.7 218 109-360 223-458 (788)
20 KOG0617 Ras suppressor protein 99.7 1.6E-19 3.5E-24 143.3 -5.3 165 129-299 29-195 (264)
21 KOG0618 Serine/threonine phosp 99.7 2.8E-19 6.1E-24 173.8 -5.1 220 108-335 241-487 (1081)
22 PLN03150 hypothetical protein; 99.7 2.7E-16 5.8E-21 156.2 13.7 153 24-193 367-527 (623)
23 KOG4237 Extracellular matrix p 99.6 8.4E-18 1.8E-22 149.6 -9.0 265 72-336 68-358 (498)
24 PLN03150 hypothetical protein; 99.4 7.3E-13 1.6E-17 131.8 8.2 116 254-369 419-537 (623)
25 COG4886 Leucine-rich repeat (L 99.4 7.1E-13 1.5E-17 125.7 6.3 197 137-341 97-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 2.6E-14 5.7E-19 132.9 -4.9 195 132-335 74-271 (722)
27 KOG1909 Ran GTPase-activating 99.3 2.1E-13 4.6E-18 120.1 -2.5 227 71-312 30-310 (382)
28 COG4886 Leucine-rich repeat (L 99.3 4.9E-12 1.1E-16 120.0 5.6 193 160-360 96-290 (394)
29 KOG0532 Leucine-rich repeat (L 99.2 2.6E-13 5.5E-18 126.5 -5.9 175 155-337 73-247 (722)
30 KOG1259 Nischarin, modulator o 99.2 3.2E-12 7E-17 110.6 1.0 207 126-340 207-415 (490)
31 KOG3207 Beta-tubulin folding c 99.2 3.7E-12 8E-17 115.4 0.0 110 228-337 196-314 (505)
32 KOG1909 Ran GTPase-activating 99.2 1E-12 2.3E-17 115.8 -4.2 236 100-336 22-310 (382)
33 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 112.3 -1.3 207 105-313 118-339 (505)
34 KOG1259 Nischarin, modulator o 99.0 8.4E-11 1.8E-15 102.0 2.1 202 150-359 207-411 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.7E-15 96.0 2.8 123 132-259 18-146 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.5E-15 95.3 2.5 101 229-331 42-147 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3E-10 6.4E-15 116.0 3.3 89 102-192 565-653 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 8.2E-10 1.8E-14 75.1 3.8 61 276-336 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.4E-15 111.1 -1.0 241 106-359 70-317 (414)
40 KOG0531 Protein phosphatase 1, 98.9 8.5E-11 1.8E-15 112.0 -2.0 198 130-338 69-269 (414)
41 PF08263 LRRNT_2: Leucine rich 98.9 2.3E-09 5E-14 66.9 4.6 39 28-67 2-43 (43)
42 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.7E-14 74.1 2.9 59 134-192 2-60 (61)
43 KOG1859 Leucine-rich repeat pr 98.8 3.5E-11 7.6E-16 115.3 -10.0 129 229-363 164-295 (1096)
44 KOG4658 Apoptotic ATPase [Sign 98.6 1.3E-08 2.9E-13 104.0 3.2 234 94-332 581-827 (889)
45 COG5238 RNA1 Ran GTPase-activa 98.5 1.5E-08 3.2E-13 87.0 -0.4 204 71-290 30-286 (388)
46 KOG2982 Uncharacterized conser 98.5 2E-08 4.4E-13 87.3 -0.1 201 130-330 68-285 (418)
47 KOG1859 Leucine-rich repeat pr 98.4 1E-09 2.2E-14 105.5 -10.8 126 206-337 165-292 (1096)
48 KOG2982 Uncharacterized conser 98.4 4.1E-08 8.9E-13 85.4 -1.7 209 128-342 40-267 (418)
49 KOG2120 SCF ubiquitin ligase, 98.2 7.3E-09 1.6E-13 90.0 -9.1 175 134-310 186-373 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.2 2.9E-07 6.2E-12 79.3 -0.3 163 103-266 25-227 (388)
51 KOG2120 SCF ubiquitin ligase, 98.2 1E-08 2.2E-13 89.1 -9.4 154 182-335 186-349 (419)
52 PRK15386 type III secretion pr 98.1 2.3E-05 5E-10 72.9 9.4 57 129-191 48-104 (426)
53 KOG4579 Leucine-rich repeat (L 98.0 1E-07 2.2E-12 73.7 -5.7 83 132-217 52-135 (177)
54 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.4E-10 51.3 3.3 36 301-337 2-37 (44)
55 KOG4579 Leucine-rich repeat (L 98.0 1.8E-07 3.9E-12 72.3 -4.7 87 253-343 53-141 (177)
56 PF12799 LRR_4: Leucine Rich r 98.0 8.2E-06 1.8E-10 50.9 3.2 36 134-170 2-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.8 4.7E-06 1E-10 83.5 -0.4 112 156-269 147-266 (699)
58 KOG1644 U2-associated snRNP A' 97.7 6.8E-05 1.5E-09 62.1 5.7 103 134-238 43-149 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 4.5E-06 9.7E-11 83.7 -1.8 152 107-260 121-282 (699)
60 PRK15386 type III secretion pr 97.7 0.00031 6.8E-09 65.5 10.3 139 153-311 48-188 (426)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00026 5.7E-09 55.5 7.7 83 129-214 8-90 (129)
62 PF13306 LRR_5: Leucine rich r 97.6 0.00032 6.9E-09 55.1 7.4 124 102-232 6-129 (129)
63 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.5E-09 60.0 4.9 103 253-356 42-149 (233)
64 KOG2739 Leucine-rich acidic nu 97.3 8E-05 1.7E-09 64.2 1.5 13 181-193 91-103 (260)
65 KOG4341 F-box protein containi 97.1 7.2E-06 1.6E-10 74.8 -7.5 232 104-335 160-437 (483)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00029 6.3E-09 60.8 1.7 93 100-195 35-130 (260)
67 PF00560 LRR_1: Leucine Rich R 95.5 0.0057 1.2E-07 31.7 0.7 16 326-342 2-17 (22)
68 KOG2123 Uncharacterized conser 95.4 0.00049 1.1E-08 60.0 -5.5 83 157-243 19-102 (388)
69 PF00560 LRR_1: Leucine Rich R 95.3 0.0064 1.4E-07 31.5 0.6 18 135-153 2-19 (22)
70 KOG1947 Leucine rich repeat pr 95.1 0.00098 2.1E-08 64.7 -5.4 112 106-217 186-307 (482)
71 KOG2123 Uncharacterized conser 95.1 0.00052 1.1E-08 59.8 -6.4 100 228-330 18-123 (388)
72 KOG1947 Leucine rich repeat pr 94.9 0.0017 3.6E-08 63.1 -4.3 130 131-260 186-328 (482)
73 KOG4308 LRR-containing protein 94.5 8.1E-05 1.8E-09 71.6 -14.4 108 135-242 89-217 (478)
74 KOG4308 LRR-containing protein 94.2 9.4E-05 2E-09 71.2 -14.6 182 108-290 87-304 (478)
75 PF13504 LRR_7: Leucine rich r 93.9 0.034 7.4E-07 26.7 1.2 13 325-337 2-14 (17)
76 KOG3864 Uncharacterized conser 93.0 0.011 2.4E-07 49.4 -2.4 82 72-166 102-185 (221)
77 smart00369 LRR_TYP Leucine-ric 88.0 0.46 1E-05 25.4 1.9 13 301-313 3-15 (26)
78 smart00370 LRR Leucine-rich re 88.0 0.46 1E-05 25.4 1.9 13 301-313 3-15 (26)
79 PF13516 LRR_6: Leucine Rich r 87.0 0.074 1.6E-06 28.0 -1.6 15 300-314 2-16 (24)
80 KOG4341 F-box protein containi 85.6 0.22 4.7E-06 46.4 -0.4 158 107-264 267-437 (483)
81 KOG0473 Leucine-rich repeat pr 84.9 0.019 4.2E-07 49.0 -6.9 87 153-242 38-124 (326)
82 KOG0473 Leucine-rich repeat pr 84.3 0.019 4.1E-07 49.1 -7.1 89 127-218 36-124 (326)
83 KOG3864 Uncharacterized conser 82.2 0.13 2.9E-06 43.0 -2.9 35 230-264 102-136 (221)
84 smart00364 LRR_BAC Leucine-ric 79.1 1.3 2.9E-05 23.8 1.3 18 324-342 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 74.1 3 6.5E-05 22.5 1.8 13 301-313 3-15 (26)
86 smart00368 LRR_RI Leucine rich 72.3 2.9 6.4E-05 22.8 1.6 14 324-337 2-15 (28)
87 smart00367 LRR_CC Leucine-rich 65.6 5.4 0.00012 21.2 1.7 15 108-122 2-16 (26)
88 KOG4242 Predicted myosin-I-bin 60.9 21 0.00046 34.3 5.7 13 300-312 440-452 (553)
89 KOG3763 mRNA export factor TAP 54.6 4.2 9.1E-05 39.5 0.1 63 251-314 216-284 (585)
90 KOG3763 mRNA export factor TAP 49.1 7.9 0.00017 37.7 0.9 76 276-353 218-307 (585)
91 KOG4242 Predicted myosin-I-bin 48.5 24 0.00051 33.9 3.9 32 302-333 356-389 (553)
92 TIGR00864 PCC polycystin catio 32.7 27 0.00059 41.0 2.0 32 282-313 1-32 (2740)
93 PF07172 GRP: Glycine rich pro 25.4 65 0.0014 23.7 2.3 17 5-21 2-18 (95)
94 TIGR00864 PCC polycystin catio 23.5 53 0.0011 38.8 2.2 28 119-146 5-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.9e-42 Score=360.14 Aligned_cols=328 Identities=34% Similarity=0.589 Sum_probs=250.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCcceEeCCCCCcEEEEEcCCCCCC----hhhhhcc-------CC
Q 037720 26 CPPSDRAALLAFKSALHEPYIGIFNSWT-GNDCCHNWYGVSCDPETHQVAEITLRGKSED----PIFQRAH-------RT 93 (369)
Q Consensus 26 ~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~c~~~~~~v~~L~L~~~~~~----~~~~~~~-------~~ 93 (369)
..++|++||++||+++.+ +.+.+.+|+ +.+||. |.||+|+. .++|++|++++.... ..+..+. ..
T Consensus 26 ~~~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~~c~-w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSIND-PLKYLSNWNSSADVCL-WQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhCCC-CcccCCCCCCCCCCCc-CcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 367899999999999964 556788997 677886 99999985 469999999983211 1111111 23
Q ss_pred CcceeecCcccc-CCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCC
Q 037720 94 GYMTGFISPAVC-KLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGP 172 (369)
Q Consensus 94 ~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 172 (369)
|.+.|.+|..+. .+++|++|++++ |.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~-n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSN-NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcC-CccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 445555555443 566666666663 455555553 3466677777777777777777777888888888888888777
Q ss_pred CCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCC
Q 037720 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKM 252 (369)
Q Consensus 173 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l 252 (369)
+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 77778888888888888888877778888888888888888888887888888888888888888888887788888888
Q ss_pred CCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEc
Q 037720 253 PDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDL 331 (369)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 331 (369)
++|++|++++|.+.+..|..+.. ++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..+++|++|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 88888888888888777776655 78888888888888888888888888888888888888888888888888888888
Q ss_pred ccCcCceeCCCC-CCCCCCCcccccCCCC
Q 037720 332 SHNNLCGKIPAG-SPFDHLDASSFESNKC 359 (369)
Q Consensus 332 s~N~l~g~ip~~-~~~~~l~~l~~~~n~~ 359 (369)
++|.++|.+|.. ..+++|+.+++++|..
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 888888888863 5567788888887753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-33 Score=295.53 Aligned_cols=269 Identities=35% Similarity=0.534 Sum_probs=229.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
|.+.+.+|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLST-NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCC-CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 566666677777777777777774 5666667776777777777777777777777777777888888888888888777
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCC
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 253 (369)
|..+.++++|+.|++++|.+++.++..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++..|..+..++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh
Confidence 7778888888888888888887777777788888888888888887777655 457899999999999989999999999
Q ss_pred CCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcc
Q 037720 254 DLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLS 332 (369)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 332 (369)
+|++|++++|.+.+.+|..+.. ++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|+++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 9999999999999999988776 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCceeCCCCCCCCCCCcccccCCCCccCCC
Q 037720 333 HNNLCGKIPAGSPFDHLDASSFESNKCLCGKP 364 (369)
Q Consensus 333 ~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~~ 364 (369)
+|+++|.+|....+..+....+.+|+.+|+.+
T Consensus 580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999998888889999999999999865
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=8e-29 Score=228.61 Aligned_cols=288 Identities=25% Similarity=0.256 Sum_probs=190.0
Q ss_pred CCcEEEEEcCCCCCC----------hhhhhcc-CCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEE
Q 037720 70 THQVAEITLRGKSED----------PIFQRAH-RTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRIL 138 (369)
Q Consensus 70 ~~~v~~L~L~~~~~~----------~~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L 138 (369)
.++++.|+|...-.. +..+.++ +.|.++....+.+..-.++++|+|++ |.++..-...|.++.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheee
Confidence 457777777763211 1112222 12333333334455555666666663 55554444556666666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccc
Q 037720 139 DLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS 218 (369)
Q Consensus 139 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 218 (369)
.|+.|.++...+..|.++++|+.|+|..|+|...---.|.++++|+.|.+..|.+...-...|..+.++++|+|+.|++.
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 66666666444555666666666666666665332345666666666666666666555666777777777777777777
Q ss_pred ccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcC
Q 037720 219 GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFG 297 (369)
Q Consensus 219 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~ 297 (369)
..-..++.++++|+.|+++.|.+....++.+..+++|++|+|+.|+++...+..+.. ..|++|+|++|+++-.-...|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 666667777778888888888877777777777778888888888877555555544 7778888888877755556677
Q ss_pred CCCCCCEEEccCCCCCCCCcc---cCcCCCCcCEEEcccCcCceeCCC--CCCCCCCCcccccCCCC
Q 037720 298 PKSYFMVLDLSYNKLSGPIPR---TLSGTSYIGYLDLSHNNLCGKIPA--GSPFDHLDASSFESNKC 359 (369)
Q Consensus 298 ~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~l~~l~~~~n~~ 359 (369)
.+++|+.|||++|.++..+.+ .+..+++|+.|++.+|++. .||. -..++.|+.+++.+|+.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence 788888888888887765433 4567888888888888886 6665 34577788888888865
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3e-28 Score=224.82 Aligned_cols=271 Identities=27% Similarity=0.273 Sum_probs=238.4
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
|.++..-..+|..+.+|..|.|+. |.++..-+..|.++++|+.|+|..|.|.-.-.-.|.++++|+.|.|..|.+....
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred ccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 777777778899999999999995 8888666677888999999999999998443567899999999999999999777
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCC
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 253 (369)
-..|..+.++++|+|..|+++..-..++.+++.|+.|++++|.+....+++|...++|+.|+++.|+++...+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 77899999999999999999977778899999999999999999989999999999999999999999988888999999
Q ss_pred CCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCC---cCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEE
Q 037720 254 DLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIP---DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYL 329 (369)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 329 (369)
.|++|+|++|.+.......+.. ++|++|||++|.+...+. ..|.++++|+.|++.+|++....-.+|.+++.|++|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 9999999999998665555555 899999999999986554 357889999999999999998888899999999999
Q ss_pred EcccCcCceeCCCCCCCCCCCcccccCCCCccCCCC
Q 037720 330 DLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 330 ~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
||.+|.|-..-|....--.|.++.+..-..+|+|.+
T Consensus 422 dL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred cCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 999999986555533333788889999999999875
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.3e-26 Score=213.02 Aligned_cols=262 Identities=26% Similarity=0.378 Sum_probs=169.2
Q ss_pred Ccc-eeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCC
Q 037720 94 GYM-TGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGP 172 (369)
Q Consensus 94 ~~~-~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 172 (369)
|++ ..-+|+.+.++..|+.|||++ |.+. +.|..+..-+++-+|+|++|+|..+.-..|.+++-|-+|||++|++. .
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLSh-NqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSH-NQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecch-hhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 444 345788889999999999986 5555 77888888888889999999988433344668888889999999888 6
Q ss_pred CCccccCCCCCcEEEeecccccC-------------------------CCCcccCCCCCCcEEEccCCcccccCCccccC
Q 037720 173 IPGSIGNLSSLMHLDVRNNRISG-------------------------PIPGCFGRLHMLSRALLSGNQISGTIPSSISR 227 (369)
Q Consensus 173 ~~~~~~~l~~L~~L~Ls~n~l~~-------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 227 (369)
+|+.+..+..|++|+|++|.+.- .+|.++..+.+|..++++.|.+. ..|+.+.+
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 77778888888888888887642 23333444444444445444444 44444444
Q ss_pred CCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCC-ccCCcCcCCCCCCCEE
Q 037720 228 VYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLE-GKIPDAFGPKSYFMVL 305 (369)
Q Consensus 228 l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L 305 (369)
+++|+.|++|+|.++ .+....+...+|++|+++.|+++ .+|..+.. ++|+.|.+.+|+++ +-+|..++.+.+|+++
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 555555555555444 22223334444455555555544 33433333 44555555555444 2345555666666666
Q ss_pred EccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCCCCccCC
Q 037720 306 DLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKCLCGK 363 (369)
Q Consensus 306 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c~~ 363 (369)
..++|++. .+|+.+..+..|+.|.|+.|++. .+|+. ..++.+..+|+.+||.+--+
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCC
Confidence 66666655 67788888888888888888887 67764 55678888899888876443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-25 Score=209.32 Aligned_cols=253 Identities=25% Similarity=0.324 Sum_probs=127.9
Q ss_pred ecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCc-cCCccccCCCCCCEEEeecccCCCCCCccc
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISG-EIPRHIGKLHRLSVLNIADNYVSGPIPGSI 177 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 177 (369)
.+|..++.+.+|++|++++ |.+. .+-..++.++.|+.+.+.+|++.. -+|+.+..+..|+.|||++|++. .+|..+
T Consensus 46 ~vPeEL~~lqkLEHLs~~H-N~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L 122 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAH-NQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL 122 (1255)
T ss_pred hChHHHHHHhhhhhhhhhh-hhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh
Confidence 3455555555555555553 2222 122234445555555555555432 24455555555555555555555 445555
Q ss_pred cCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcE
Q 037720 178 GNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLST 257 (369)
Q Consensus 178 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 257 (369)
...+++-.|+|++|+|..+....+.+++.|-.|+|++|++. .+|..+..+..|++|++++|.+...--..+..+++|+.
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 55555555555555555333333445555555555555555 44555555555555555555554222223334455555
Q ss_pred EeccCCccc-ccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCc
Q 037720 258 LNLDFNRFS-GVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNN 335 (369)
Q Consensus 258 L~L~~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 335 (369)
|++++.+-+ ..+|..+.. .+|..+|++.|.+. .+|+.+..+++|+.|+||+|+|+ ++.-..+...+|++|++|.|+
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence 555554332 223333333 55555666666655 55556666666666666666665 333333444555666666666
Q ss_pred CceeCCC-CCCCCCCCcccccCCC
Q 037720 336 LCGKIPA-GSPFDHLDASSFESNK 358 (369)
Q Consensus 336 l~g~ip~-~~~~~~l~~l~~~~n~ 358 (369)
++ .+|+ ...+++|+++...+|.
T Consensus 280 Lt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hc-cchHHHhhhHHHHHHHhccCc
Confidence 65 4554 2344555555444443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=3.4e-25 Score=196.58 Aligned_cols=250 Identities=30% Similarity=0.448 Sum_probs=213.3
Q ss_pred ecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcccc
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG 178 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (369)
.+.+.+.++..|.+|++.+ +.+. ..|.+++.+..++.++.++|++. .+|+.++.+..|..++.++|.+. .+|+.++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~-n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHD-NKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEecc-chhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence 3456778889999999986 5554 67888999999999999999998 88999999999999999999998 7788899
Q ss_pred CCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEE
Q 037720 179 NLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTL 258 (369)
Q Consensus 179 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 258 (369)
.+..++.++..+|+++ ..|+.+.++.+|..+++.+|++. .+|+..-+++.|+++|...|.++ .+|+.++.+.+|+.|
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 9999999999999998 67888889999999999999998 44544545999999999999887 788899999999999
Q ss_pred eccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCc-CCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 259 NLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAF-GPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 259 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
++..|++. .+|+.-+...|++|+++.|++. .+|... .+++++..||+++|+++ +.|+.+.-+++|.+||+|+|.++
T Consensus 212 yL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 212 YLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred Hhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 99999998 5664333388999999999988 666655 48999999999999999 78999999999999999999999
Q ss_pred eeCCCCCCCCCCCcccccCCCC
Q 037720 338 GKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 338 g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
+--+..+.+ .|..+.+.|||.
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cCCcccccc-eeeehhhcCCch
Confidence 655555666 888899999985
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.4e-23 Score=186.31 Aligned_cols=257 Identities=26% Similarity=0.367 Sum_probs=160.2
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCcccc-CCCCCCEEEeecccCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIG-KLHRLSVLNIADNYVSGP 172 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~ 172 (369)
.++-+.+|+.++.+.+|+-|++.. |.+. .+| .|.++..|+++++..|.+. .+|.... +++++.+|||..|+++ .
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~-Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRR-NKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhh-cccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-c
Confidence 345566666666666666666654 3332 233 4555555555555555555 4444433 6777888888888887 6
Q ss_pred CCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccc---------------------------------
Q 037720 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG--------------------------------- 219 (369)
Q Consensus 173 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--------------------------------- 219 (369)
.|..+.-+.+|++||+++|.++ .+|..++++ .|+.|.+.+|.+..
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 7888888888888888888887 567778887 77888887775420
Q ss_pred -------------------------------cCCccccCCC---CCCEEEcccCCCc-----------------------
Q 037720 220 -------------------------------TIPSSISRVY---RLTDLDLSTNQIS----------------------- 242 (369)
Q Consensus 220 -------------------------------~~~~~l~~l~---~L~~L~ls~n~l~----------------------- 242 (369)
.+|+...... -...++++.|++.
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 0111100000 1334444444443
Q ss_pred cccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCc
Q 037720 243 GPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLS 321 (369)
Q Consensus 243 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 321 (369)
+.+|..+..+++|..|++++|-+. .+|.+.+. ..|+.|+++.|+|. .+|..+..+..++.+-.++|++....++.+.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 123334555667777777777665 45555544 55777777777665 5665555555555555556666655555577
Q ss_pred CCCCcCEEEcccCcCceeCCC-CCCCCCCCcccccCCCCc
Q 037720 322 GTSYIGYLDLSHNNLCGKIPA-GSPFDHLDASSFESNKCL 360 (369)
Q Consensus 322 ~l~~L~~L~ls~N~l~g~ip~-~~~~~~l~~l~~~~n~~~ 360 (369)
.+.+|+.||+.+|.+. +||+ .+.+.++..++++|||+-
T Consensus 503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7888888888888887 5555 477788888888888753
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.2e-19 Score=188.82 Aligned_cols=249 Identities=23% Similarity=0.283 Sum_probs=173.7
Q ss_pred ecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcccc
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG 178 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (369)
.++..+..+++|+.|+|++++.+ ..+|. ++.+++|++|++++|.....+|..+.++++|++|++++|.....+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 45556677888888888754333 45554 6778888888888876666778888888888888888765544666554
Q ss_pred CCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccc------------------------------cCC
Q 037720 179 NLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSI------------------------------SRV 228 (369)
Q Consensus 179 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l------------------------------~~l 228 (369)
++++|++|++++|...+.+|.. ..+|++|++++|.+. .+|..+ ...
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhcc
Confidence 6777888888777654444432 345666677666654 333221 113
Q ss_pred CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEcc
Q 037720 229 YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLS 308 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 308 (369)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.....++|++|++++|.....+|.. ..+|+.|+|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 4677888888877667888888899999999988765556676655578888999887655455543 3578889999
Q ss_pred CCCCCCCCcccCcCCCCcCEEEcccC-cCceeCCC-CCCCCCCCcccccCCCC
Q 037720 309 YNKLSGPIPRTLSGTSYIGYLDLSHN-NLCGKIPA-GSPFDHLDASSFESNKC 359 (369)
Q Consensus 309 ~n~l~~~~~~~l~~l~~L~~L~ls~N-~l~g~ip~-~~~~~~l~~l~~~~n~~ 359 (369)
+|.++ .+|.++..+++|++|++++| ++. .+|. ...++.|+.+++++.+.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCcc
Confidence 99887 67888888999999999886 555 4554 34566666666665543
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.7e-19 Score=180.04 Aligned_cols=224 Identities=25% Similarity=0.428 Sum_probs=144.1
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
++|+.|++++ |.++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|+|++|.+. .+|..+. .+|++|+
T Consensus 199 ~~L~~L~Ls~-N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDN-NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecC-CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 3577777774 4555 4554432 46777777777776 4555443 36777777777776 5565443 4677777
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccc
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSG 267 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 267 (369)
+++|+++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.++. +|..+ .++|+.|++++|.+++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc
Confidence 7777776 3555443 46777777777776 3454332 357777777777763 44333 2578888888888774
Q ss_pred cCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC----
Q 037720 268 VIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG---- 343 (369)
Q Consensus 268 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~---- 343 (369)
+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|..
T Consensus 340 -LP~~l~-~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 340 -LPASLP-PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred -CChhhc-CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 444332 67888888888887 4565443 57888888888887 4555443 35788888888887 55542
Q ss_pred -CCCCCCCcccccCCCC
Q 037720 344 -SPFDHLDASSFESNKC 359 (369)
Q Consensus 344 -~~~~~l~~l~~~~n~~ 359 (369)
...+.+..+++.+||.
T Consensus 411 ~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhcCCCccEEEeeCCCc
Confidence 1235566777888875
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=3.1e-22 Score=177.54 Aligned_cols=271 Identities=23% Similarity=0.206 Sum_probs=157.8
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccC-CcCCccCCccccCCCCCCEEEeecccCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTG-NKISGEIPRHIGKLHRLSVLNIADNYVSGP 172 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 172 (369)
|.++...+.+|+.+++|+.|||++ |+++..-|+.|.+++.|..|.+.+ |+|+......|.++..|+.|.+.-|++.-.
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred CCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 555555555555556666666653 555555555555555555554444 555544444455555555555555555544
Q ss_pred CCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccc------------ccCCccccCCCCCCEEEcccCC
Q 037720 173 IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS------------GTIPSSISRVYRLTDLDLSTNQ 240 (369)
Q Consensus 173 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~~L~~L~ls~n~ 240 (369)
....|..++++..|.+..|.+...--..|..+..++.+.+.-|.+. ...|-+++......-..+...+
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 4445555555555555555554222234555555555555554421 0111122222222222222222
Q ss_pred CccccccccCC-CCCCcEEeccCCcccccCCcccCc--CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCc
Q 037720 241 ISGPIPASLGK-MPDLSTLNLDFNRFSGVIPASLLT--SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIP 317 (369)
Q Consensus 241 l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 317 (369)
+....+..+.. +.++..=-.+.+...+..|..-+. ++|++|+|++|+++++-+.+|....+++.|.|..|+|...-.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 22111111111 111111111222233444544333 899999999999999889999999999999999999987667
Q ss_pred ccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCCCCccCCCC
Q 037720 318 RTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 318 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
..|.++..|+.|+|++|+|+-..|.. .....|.++.+-+||+.|+|-+
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 77889999999999999999666652 3345678889999999999865
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.8e-18 Score=181.62 Aligned_cols=245 Identities=18% Similarity=0.188 Sum_probs=113.3
Q ss_pred cCccccCCC-CCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcccc
Q 037720 100 ISPAVCKLP-HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG 178 (369)
Q Consensus 100 ~~~~l~~l~-~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (369)
+|..+..++ +|+.|.+.+ +.+ ..+|..+ .+.+|++|++.++.+. .++..+..+++|++|+|+++.....+|. +.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~-~~l-~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDK-YPL-RCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred cCcchhhcCcccEEEEecC-CCC-CCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 344443332 355555543 111 2344433 2445555555555554 3444455555555555555443333332 44
Q ss_pred CCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEE
Q 037720 179 NLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTL 258 (369)
Q Consensus 179 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 258 (369)
.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. .++|++|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 55555555555554444555555555555555555544333444433 4555555555555433333321 2344555
Q ss_pred eccCCcccccCCcccCc-------------------------------CCCCEEEccCCcCCccCCcCcCCCCCCCEEEc
Q 037720 259 NLDFNRFSGVIPASLLT-------------------------------SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDL 307 (369)
Q Consensus 259 ~L~~n~l~~~~~~~~~~-------------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 307 (369)
++++|.+. .+|..+.. ++|++|++++|...+.+|..++++++|+.|++
T Consensus 731 ~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 731 DLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred ecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 55555443 22221111 24445555555444445555555555555555
Q ss_pred cCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCC
Q 037720 308 SYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESN 357 (369)
Q Consensus 308 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n 357 (369)
++|...+.+|..+ .+++|+.|++++|.....+|.. ..+++.+++++|
T Consensus 810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n 856 (1153)
T PLN03210 810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT 856 (1153)
T ss_pred CCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC
Confidence 5544333444433 4455555555555333344431 234455555444
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.4e-21 Score=179.72 Aligned_cols=260 Identities=21% Similarity=0.271 Sum_probs=183.6
Q ss_pred ecCccccCCCCCCEEecCCCCCCcc----cCCcCCCCCCCCcEEEccCCcCCc------cCCccccCCCCCCEEEeeccc
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISG----EIPRCSTLLPFLRILDLTGNKISG------EIPRHIGKLHRLSVLNIADNY 168 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~----~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~ 168 (369)
.....+..+.+|++|++++ +.++. .++..+...+.|++++++++.+.+ .++..+..+++|++|++++|.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~-~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 14 RATELLPKLLCLQVLRLEG-NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred chHHHHHHHhhccEEeecC-CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3445566677799999985 55533 245556677889999999887762 234566778899999999998
Q ss_pred CCCCCCccccCCCC---CcEEEeecccccC----CCCcccCCC-CCCcEEEccCCccccc----CCccccCCCCCCEEEc
Q 037720 169 VSGPIPGSIGNLSS---LMHLDVRNNRISG----PIPGCFGRL-HMLSRALLSGNQISGT----IPSSISRVYRLTDLDL 236 (369)
Q Consensus 169 l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l 236 (369)
+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 87655555555544 9999999998863 223345566 8899999999988742 3445667788999999
Q ss_pred ccCCCccc----cccccCCCCCCcEEeccCCcccccCCcc----cCc-CCCCEEEccCCcCCccCCcCcC-----CCCCC
Q 037720 237 STNQISGP----IPASLGKMPDLSTLNLDFNRFSGVIPAS----LLT-SGVNNLNLSKNSLEGKIPDAFG-----PKSYF 302 (369)
Q Consensus 237 s~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~-~~L~~L~L~~n~l~~~~~~~l~-----~l~~L 302 (369)
++|.+++. ++..+..+++|+.|++++|.+.+..... +.. ++|++|++++|.+++.....+. ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 99988732 3344566679999999999887443222 222 7899999999988863222221 24789
Q ss_pred CEEEccCCCCCC----CCcccCcCCCCcCEEEcccCcCcee----CCC-CCCC-CCCCcccccCCCC
Q 037720 303 MVLDLSYNKLSG----PIPRTLSGTSYIGYLDLSHNNLCGK----IPA-GSPF-DHLDASSFESNKC 359 (369)
Q Consensus 303 ~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~N~l~g~----ip~-~~~~-~~l~~l~~~~n~~ 359 (369)
+.|++++|.+++ .+...+..+++|+++++++|.++.. +.. ...+ ..++++++..||+
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999873 3445566678999999999999843 222 2334 6788888888875
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.7e-18 Score=172.11 Aligned_cols=163 Identities=25% Similarity=0.343 Sum_probs=77.9
Q ss_pred CCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 037720 158 RLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLS 237 (369)
Q Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 237 (369)
+|+.|++++|+++ .+|. ..++|++|++++|.+++ +|... ..|+.|++++|.++ .+|.. ..+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc-ccccc---ccccceEecC
Confidence 4555566666655 3333 13567777777777664 23211 22334444444443 22321 1245555555
Q ss_pred cCCCccccccccC-----------------CCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCC
Q 037720 238 TNQISGPIPASLG-----------------KMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKS 300 (369)
Q Consensus 238 ~n~l~~~~~~~l~-----------------~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 300 (369)
+|++++ +|.... ...+|+.|++++|.+++ +|.. .++|+.|++++|++++ +|.. ..
T Consensus 351 ~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~Lss-IP~l---~~ 422 (788)
T PRK15387 351 DNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLTS-LPML---PS 422 (788)
T ss_pred CCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc--ccCCCEEEccCCcCCC-CCcc---hh
Confidence 555552 222111 01244555555555542 2221 1345555555555552 3332 12
Q ss_pred CCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCC
Q 037720 301 YFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341 (369)
Q Consensus 301 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip 341 (369)
+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 4555555555555 455555556666666666666655443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=4.5e-21 Score=186.06 Aligned_cols=242 Identities=26% Similarity=0.383 Sum_probs=177.0
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
++|+.|+.+. +.++...+ .....+|+++++++|.++ .+|..+..+.+|+.++..+|.++ .+|..+....+|+.|.
T Consensus 219 ~~l~~L~a~~-n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADH-NPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeecc-Ccceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 4555555553 33332211 223456778888888877 45677777888888888888775 6677777777777777
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCcccccCCccc--------------------------cCCCCCCEEEcccCCC
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSI--------------------------SRVYRLTDLDLSTNQI 241 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l--------------------------~~l~~L~~L~ls~n~l 241 (369)
+.+|.+. -+|.....++.|++|+|..|++. .+|+.+ ..+..|+.|++.+|.+
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 7777776 45556666777777777777665 222211 1234678888888988
Q ss_pred ccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccC
Q 037720 242 SGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTL 320 (369)
Q Consensus 242 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 320 (369)
+...-+.+.+.+.|+.|+|++|++.......+.. ..|+.|+|++|.++ .+|+.+..++.|++|...+|++. ..| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 8777778888999999999999887433333333 78999999999998 78888999999999999999988 566 78
Q ss_pred cCCCCcCEEEcccCcCce-eCCCCCCCCCCCcccccCCCC
Q 037720 321 SGTSYIGYLDLSHNNLCG-KIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 321 ~~l~~L~~L~ls~N~l~g-~ip~~~~~~~l~~l~~~~n~~ 359 (369)
..++.|+.+|++.|+++. .+|.-...++|+.++++||++
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 899999999999999875 456544448899999999986
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.5e-18 Score=171.63 Aligned_cols=216 Identities=21% Similarity=0.410 Sum_probs=168.5
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
|.+. .+|..+. ++|+.|++++ |.++ .+|..+ .+.|+.|++++|.++ .+|..+. .+|++|++++|+++ .+
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~-N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~L 277 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANS-NQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CL 277 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCC-Cccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cc
Confidence 5555 3555443 5899999996 6666 566644 357999999999998 6777664 58999999999999 57
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCC
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 253 (369)
|..+. .+|++|++++|.++. +|..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. +
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~ 346 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--P 346 (754)
T ss_pred ccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--C
Confidence 77654 589999999999984 555443 47899999999998 4565443 689999999999985 665553 7
Q ss_pred CCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccC----cCCCCcCEE
Q 037720 254 DLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTL----SGTSYIGYL 329 (369)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L 329 (369)
+|+.|++++|.++ .+|..+ .+.|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ...+++..|
T Consensus 347 sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred cccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 9999999999998 455544 378999999999999 5666554 36999999999998 455543 456889999
Q ss_pred EcccCcCc
Q 037720 330 DLSHNNLC 337 (369)
Q Consensus 330 ~ls~N~l~ 337 (369)
++.+|.++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 99999986
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=4.5e-20 Score=169.80 Aligned_cols=251 Identities=21% Similarity=0.277 Sum_probs=187.5
Q ss_pred cEEEEEcCCCCCChhhhhccCCCccee----ecCccccCCCCCCEEecCCCCCCc------ccCCcCCCCCCCCcEEEcc
Q 037720 72 QVAEITLRGKSEDPIFQRAHRTGYMTG----FISPAVCKLPHLSSLTLTDWEGIS------GEIPRCSTLLPFLRILDLT 141 (369)
Q Consensus 72 ~v~~L~L~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~------~~~~~~~~~l~~L~~L~L~ 141 (369)
.++.+++++ +.++. .++..+...+.++++++++ +.+. ..++..+..+++|++|+++
T Consensus 24 ~L~~l~l~~-------------~~l~~~~~~~i~~~l~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 89 (319)
T cd00116 24 CLQVLRLEG-------------NTLGEEAAKALASALRPQPSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLS 89 (319)
T ss_pred hccEEeecC-------------CCCcHHHHHHHHHHHhhCCCceEEeccc-cccCCcchHHHHHHHHHHhcCceeEEEcc
Confidence 377888888 44432 3566677888999999986 4444 2234556778999999999
Q ss_pred CCcCCccCCccccCCCC---CCEEEeecccCCC----CCCccccCC-CCCcEEEeecccccCC----CCcccCCCCCCcE
Q 037720 142 GNKISGEIPRHIGKLHR---LSVLNIADNYVSG----PIPGSIGNL-SSLMHLDVRNNRISGP----IPGCFGRLHMLSR 209 (369)
Q Consensus 142 ~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~ 209 (369)
+|.+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. +...+..+++|++
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 90 DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169 (319)
T ss_pred CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE
Confidence 99998666666655555 9999999999873 223345666 8999999999998842 3345667789999
Q ss_pred EEccCCccccc----CCccccCCCCCCEEEcccCCCccc----cccccCCCCCCcEEeccCCcccccCCcccC------c
Q 037720 210 ALLSGNQISGT----IPSSISRVYRLTDLDLSTNQISGP----IPASLGKMPDLSTLNLDFNRFSGVIPASLL------T 275 (369)
Q Consensus 210 L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------~ 275 (369)
|++++|.+++. ++..+...++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+. .
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 99999998742 334456678999999999998633 345667889999999999998853222221 2
Q ss_pred CCCCEEEccCCcCCc----cCCcCcCCCCCCCEEEccCCCCCCC----CcccCcCC-CCcCEEEcccCcC
Q 037720 276 SGVNNLNLSKNSLEG----KIPDAFGPKSYFMVLDLSYNKLSGP----IPRTLSGT-SYIGYLDLSHNNL 336 (369)
Q Consensus 276 ~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~ls~N~l 336 (369)
+.|++|++++|.+++ .+...+..+++|+++++++|.++.. ....+... +.|+++++.+|.+
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 689999999999973 3344566678999999999999965 44455555 7899999998864
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-20 Score=148.34 Aligned_cols=165 Identities=27% Similarity=0.522 Sum_probs=128.8
Q ss_pred cccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCC
Q 037720 103 AVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSS 182 (369)
Q Consensus 103 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (369)
.+.++.+++.|.|++ |.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSH-NKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSH-NKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhccc-Ccee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 455666777777875 5554 56667888888888888888888 77888888888888888888887 77888888888
Q ss_pred CcEEEeecccccC-CCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEecc
Q 037720 183 LMHLDVRNNRISG-PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLD 261 (369)
Q Consensus 183 L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 261 (369)
|+.||+.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|+++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 8888888888753 57777888888888888888887 77778888888888888888876 567778888888888888
Q ss_pred CCcccccCCcccC
Q 037720 262 FNRFSGVIPASLL 274 (369)
Q Consensus 262 ~n~l~~~~~~~~~ 274 (369)
+|+++ .+|++++
T Consensus 182 gnrl~-vlppel~ 193 (264)
T KOG0617|consen 182 GNRLT-VLPPELA 193 (264)
T ss_pred cceee-ecChhhh
Confidence 88887 4554443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=6.9e-17 Score=160.72 Aligned_cols=218 Identities=25% Similarity=0.354 Sum_probs=114.8
Q ss_pred CCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEe
Q 037720 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDV 188 (369)
Q Consensus 109 ~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (369)
+|+.|++.+ |.++ .+|. .+++|++|++++|.++ .+|.. .++|++|++++|.++ .+|.. ..+|+.|++
T Consensus 223 ~L~~L~L~~-N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPD-NNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred CCCEEEccC-CcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 455555553 3333 2332 1345555555555555 23321 234555555555554 23321 134556666
Q ss_pred ecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccccc
Q 037720 189 RNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268 (369)
Q Consensus 189 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 268 (369)
++|+++ .+|. .+++|++|++++|++++ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|.+++
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence 666665 2333 23567777777777763 3432 2346667777777763 4431 2478888998888885
Q ss_pred CCcccCcCCCCEEEccCCcCCccCCcCcC-----------------CCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEc
Q 037720 269 IPASLLTSGVNNLNLSKNSLEGKIPDAFG-----------------PKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDL 331 (369)
Q Consensus 269 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----------------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 331 (369)
+|.. ..+|+.|++++|++++ +|.... ..++|+.|++++|++++ +|.. ..+|+.|++
T Consensus 357 LP~l--p~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~L 429 (788)
T PRK15387 357 LPTL--PSELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPML---PSGLLSLSV 429 (788)
T ss_pred CCCC--Ccccceehhhcccccc-CcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC-CCcc---hhhhhhhhh
Confidence 3321 1344444444444442 332110 11345555555555552 3332 234566666
Q ss_pred ccCcCceeCCCC-CCCCCCCcccccCCCCc
Q 037720 332 SHNNLCGKIPAG-SPFDHLDASSFESNKCL 360 (369)
Q Consensus 332 s~N~l~g~ip~~-~~~~~l~~l~~~~n~~~ 360 (369)
++|+++ .+|.. ..+..+..+++++|+.-
T Consensus 430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 430 YRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 666666 56653 44667778888888764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.6e-19 Score=143.32 Aligned_cols=165 Identities=27% Similarity=0.441 Sum_probs=144.8
Q ss_pred CCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCc
Q 037720 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208 (369)
Q Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 208 (369)
+.++.+++.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445777888999999999 78889999999999999999998 78899999999999999999987 7899999999999
Q ss_pred EEEccCCccc-ccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCC
Q 037720 209 RALLSGNQIS-GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKN 286 (369)
Q Consensus 209 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n 286 (369)
.|++.+|++. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|.+++. +.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999999885 367888888999999999999998 77888999999999999999987 56777776 88999999999
Q ss_pred cCCccCCcCcCCC
Q 037720 287 SLEGKIPDAFGPK 299 (369)
Q Consensus 287 ~l~~~~~~~l~~l 299 (369)
+++ .+|..++++
T Consensus 184 rl~-vlppel~~l 195 (264)
T KOG0617|consen 184 RLT-VLPPELANL 195 (264)
T ss_pred eee-ecChhhhhh
Confidence 998 666665543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=2.8e-19 Score=173.77 Aligned_cols=220 Identities=25% Similarity=0.362 Sum_probs=157.1
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
.+|++++++. +.+. .+|+.++.+.+|+.+...+|.++ .+|..+...++|++|++.+|.+. .+|+....++.|++|+
T Consensus 241 ~nl~~~dis~-n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecch-hhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 4566666663 4443 45566666666777777666665 55666666666666666666665 4455555566666666
Q ss_pred eecccccCCCCcc--------------------------cCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCC
Q 037720 188 VRNNRISGPIPGC--------------------------FGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQI 241 (369)
Q Consensus 188 Ls~n~l~~~~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l 241 (369)
|..|.+.. +|.. =..++.|+.|++.+|.++...-..+.++..|++|++++|++
T Consensus 317 L~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 66665542 2211 11345688888889998877777788899999999999999
Q ss_pred ccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccC
Q 037720 242 SGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTL 320 (369)
Q Consensus 242 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 320 (369)
.......+.++..|++|+|++|+++ .+|..+.. ..|++|...+|++. ..| .+..++.|+.+|++.|+++.......
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 8555567888999999999999998 56666665 88999999999988 677 78889999999999999875433332
Q ss_pred cCCCCcCEEEcccCc
Q 037720 321 SGTSYIGYLDLSHNN 335 (369)
Q Consensus 321 ~~l~~L~~L~ls~N~ 335 (369)
..-++|++||+++|.
T Consensus 473 ~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNT 487 (1081)
T ss_pred CCCcccceeeccCCc
Confidence 333899999999995
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=2.7e-16 Score=156.20 Aligned_cols=153 Identities=30% Similarity=0.553 Sum_probs=119.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC---CCCcceEeCCC--C--CcEEEEEcCCCCCChhhhhccCCCcc
Q 037720 24 NCCPPSDRAALLAFKSALHEPYIGIFNSWTGNDCC---HNWYGVSCDPE--T--HQVAEITLRGKSEDPIFQRAHRTGYM 96 (369)
Q Consensus 24 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~W~~~~~c---~~w~gv~c~~~--~--~~v~~L~L~~~~~~~~~~~~~~~~~~ 96 (369)
..+.++|.+||+++|.++..+. ..+|.+++|+ ..|.||.|... . .+|+.|+|++ +.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~---~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------n~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL---RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------QGL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc---cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC-------------CCc
Confidence 4567789999999999986532 2479865553 14999999532 2 2588999988 788
Q ss_pred eeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcc
Q 037720 97 TGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGS 176 (369)
Q Consensus 97 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 176 (369)
.|.+|..+.++++|+.|+|++ |.+.|.+|..++.+++|++|++++|.+++.+|..++++++|++|+|++|.+++.+|..
T Consensus 431 ~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 431 RGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred cccCCHHHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 888888888888888888885 7788888888888888888888888888888888888888888888888888888877
Q ss_pred ccCC-CCCcEEEeecccc
Q 037720 177 IGNL-SSLMHLDVRNNRI 193 (369)
Q Consensus 177 ~~~l-~~L~~L~Ls~n~l 193 (369)
+... .++..+++.+|..
T Consensus 510 l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred HhhccccCceEEecCCcc
Confidence 7653 3566777776654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=8.4e-18 Score=149.56 Aligned_cols=265 Identities=21% Similarity=0.183 Sum_probs=158.9
Q ss_pred cEEEEEcCCCC----CChhhhhcc-------CCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEc
Q 037720 72 QVAEITLRGKS----EDPIFQRAH-------RTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDL 140 (369)
Q Consensus 72 ~v~~L~L~~~~----~~~~~~~~~-------~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L 140 (369)
..++|+|.... ++..|+.++ +.|.++..-|.+|..+.+|..|-+.++|.++..-...|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45666665432 233343332 4588888899999999999999998878888666678899999999999
Q ss_pred cCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeeccccc------------CCCCcccCCCCCCc
Q 037720 141 TGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS------------GPIPGCFGRLHMLS 208 (369)
Q Consensus 141 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~l~~l~~L~ 208 (369)
.-|++.-.....|..+++|..|.+..|.+...--..|..+..++.+++..|.+- ...|..++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999999888889999999999999999998443348999999999999888732 11222233322222
Q ss_pred EEEccCCcccccCCccccCC-CCCCEEEcccCCCccccc-cccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccC
Q 037720 209 RALLSGNQISGTIPSSISRV-YRLTDLDLSTNQISGPIP-ASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSK 285 (369)
Q Consensus 209 ~L~l~~n~l~~~~~~~l~~l-~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 285 (369)
-..+.+.++...-+..+... ..+..--.+.+...+..| ..|..+++|+.|++++|.++++.+..|.. ..+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 22222222221111111110 011100011111111111 23455555555555555555555444444 5555555555
Q ss_pred CcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcC
Q 037720 286 NSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336 (369)
Q Consensus 286 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 336 (369)
|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 555544444455555555566666665555555555555555555555544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=7.3e-13 Score=131.76 Aligned_cols=116 Identities=37% Similarity=0.647 Sum_probs=104.4
Q ss_pred CCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcc
Q 037720 254 DLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLS 332 (369)
Q Consensus 254 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 332 (369)
.++.|+|++|.+.|.+|..+.. ++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|+.++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999999999988877 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCceeCCCC--CCCCCCCcccccCCCCccCCCCCCCC
Q 037720 333 HNNLCGKIPAG--SPFDHLDASSFESNKCLCGKPLLNAC 369 (369)
Q Consensus 333 ~N~l~g~ip~~--~~~~~l~~l~~~~n~~~c~~~~~~~c 369 (369)
+|+++|.+|.. ....++..+++.+|+.+|+.+....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999984 22345678899999999997765555
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=7.1e-13 Score=125.69 Aligned_cols=197 Identities=32% Similarity=0.468 Sum_probs=99.4
Q ss_pred EEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCC-CCcEEEeecccccCCCCcccCCCCCCcEEEccCC
Q 037720 137 ILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLS-SLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215 (369)
Q Consensus 137 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 215 (369)
.+++..+.+. .....+..++.++.|++.+|.++ .++....... +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3445444443 11222333355555555555555 3444444442 5566666665555 33344555566666666666
Q ss_pred cccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcC
Q 037720 216 QISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDA 295 (369)
Q Consensus 216 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 295 (369)
++. .+|......++|+.|++++|+++ .+|........|+++.+++|.+...+........+..+.+.+|++. ..+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 555 44443435555666666666655 3444333444456666666543212211111145555555555554 22445
Q ss_pred cCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCC
Q 037720 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341 (369)
Q Consensus 296 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip 341 (369)
+..++.++.|++++|+++.... +..+.+++.|++++|.++...|
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 5555666666666666653222 5566666666666665554433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=2.6e-14 Score=132.92 Aligned_cols=195 Identities=28% Similarity=0.447 Sum_probs=154.2
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
+..-...|++.|.+. .+|..+..+..|+.+.|.+|.+. .+|..+.++..|++++++.|+++ .+|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888887 78888877888888888888887 77888888888888888888887 6677777665 78888
Q ss_pred ccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCcc
Q 037720 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGK 291 (369)
Q Consensus 212 l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 291 (369)
+++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++.. +|.....-.|..||+++|++. .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee-e
Confidence 8888887 77888888888899999999887 677788888999999999988884 445554567888999999988 7
Q ss_pred CCcCcCCCCCCCEEEccCCCCCCCCcccC---cCCCCcCEEEcccCc
Q 037720 292 IPDAFGPKSYFMVLDLSYNKLSGPIPRTL---SGTSYIGYLDLSHNN 335 (369)
Q Consensus 292 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~ls~N~ 335 (369)
+|-.|.+|++|++|-|.+|.++. .|..+ +...-.++|+..-++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 88899999999999999999984 44433 334445677777664
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=2.1e-13 Score=120.07 Aligned_cols=227 Identities=20% Similarity=0.262 Sum_probs=134.7
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCccee----ecCccccCCCCCCEEecCCCCCCccc----CCc-------CCCCCCCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTG----FISPAVCKLPHLSSLTLTDWEGISGE----IPR-------CSTLLPFL 135 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~~~----~~~-------~~~~l~~L 135 (369)
..++.|+|+| |++.. .+.+.+.+.++|+..+++ +.++|. +|+ .+-.+++|
T Consensus 30 ~s~~~l~lsg-------------nt~G~EAa~~i~~~L~~~~~L~~v~~s--d~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 30 DSLTKLDLSG-------------NTFGTEAARAIAKVLASKKELREVNLS--DMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred CceEEEeccC-------------CchhHHHHHHHHHHHhhcccceeeehH--hhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 4688999999 55532 345567778899999998 466664 332 23456788
Q ss_pred cEEEccCCcCCccCCcc----ccCCCCCCEEEeecccCCCC-------------CCccccCCCCCcEEEeecccccCC--
Q 037720 136 RILDLTGNKISGEIPRH----IGKLHRLSVLNIADNYVSGP-------------IPGSIGNLSSLMHLDVRNNRISGP-- 196 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~Ls~n~l~~~-- 196 (369)
++|+||+|.+...-+.. +..+..|++|.|.+|.+.-. ......+-+.|++++..+|++...
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 88888888876443333 45677888888888876511 111223345677777777766422
Q ss_pred --CCcccCCCCCCcEEEccCCccccc----CCccccCCCCCCEEEcccCCCcc----ccccccCCCCCCcEEeccCCccc
Q 037720 197 --IPGCFGRLHMLSRALLSGNQISGT----IPSSISRVYRLTDLDLSTNQISG----PIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 197 --~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
+...|...+.|+.+.+..|.+... +...+..++.|++||+.+|.++. .+...+..+++|++|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 122345556777777777665421 22345666777777777776652 23345556667777777777665
Q ss_pred ccCCcccCc------CCCCEEEccCCcCCcc----CCcCcCCCCCCCEEEccCCCC
Q 037720 267 GVIPASLLT------SGVNNLNLSKNSLEGK----IPDAFGPKSYFMVLDLSYNKL 312 (369)
Q Consensus 267 ~~~~~~~~~------~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l 312 (369)
......+.. +.|+.|.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 433222211 5666666666665531 112233455566666666666
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=4.9e-12 Score=119.95 Aligned_cols=193 Identities=30% Similarity=0.437 Sum_probs=158.0
Q ss_pred CEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCC-CCcEEEccCCcccccCCccccCCCCCCEEEccc
Q 037720 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLH-MLSRALLSGNQISGTIPSSISRVYRLTDLDLST 238 (369)
Q Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 238 (369)
..+++..+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 468888888752 3344566688999999999998 5666677774 9999999999998 6667789999999999999
Q ss_pred CCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCc
Q 037720 239 NQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIP 317 (369)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 317 (369)
|+++ .+|...+..+.|+.|++++|.+. .+|..... ..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 9998 55655558899999999999999 45554333 56999999999654 46667888999999999999988 447
Q ss_pred ccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCc
Q 037720 318 RTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCL 360 (369)
Q Consensus 318 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~ 360 (369)
..++.++++++|++++|.++ .++.......++.+++++|...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 78889999999999999998 6666778889999999998653
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=2.6e-13 Score=126.45 Aligned_cols=175 Identities=26% Similarity=0.404 Sum_probs=152.6
Q ss_pred CCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEE
Q 037720 155 KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDL 234 (369)
Q Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 234 (369)
.+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++++++.|++. .+|..+..+ -|+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeE
Confidence 3445567899999999 88999999999999999999998 78999999999999999999998 677766655 58999
Q ss_pred EcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCC
Q 037720 235 DLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314 (369)
Q Consensus 235 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 314 (369)
.+++|+++ .+|+.++....|..|+.+.|.+....+...+..+|+.|.+..|++. .+|..+..++ |..||++.|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence 99999998 7888899999999999999999854444444488999999999998 6777788555 999999999999
Q ss_pred CCcccCcCCCCcCEEEcccCcCc
Q 037720 315 PIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 315 ~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
.+|-.|.+++.|++|-|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 89999999999999999999998
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=3.2e-12 Score=110.64 Aligned_cols=207 Identities=21% Similarity=0.225 Sum_probs=128.8
Q ss_pred CcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeec-ccccCCCCcccCCC
Q 037720 126 PRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRN-NRISGPIPGCFGRL 204 (369)
Q Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l 204 (369)
|-.+.-+++|+.+.++++.-. .+-.....-|.|+++.+.+..++. .| .+-....+....-.. ....|..-....-.
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 333444566777777766544 222222233667777776655441 11 111111111111000 11122222233344
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEcc
Q 037720 205 HMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLS 284 (369)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 284 (369)
.-|+++++++|.++ .+.++..-.+.++.|+++.|.+... ..++.+++|+.|++++|.++...--.....++++|.|+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 56888888888887 6777788888899999999988733 34788889999999999887432211122688899999
Q ss_pred CCcCCccCCcCcCCCCCCCEEEccCCCCCCC-CcccCcCCCCcCEEEcccCcCceeC
Q 037720 285 KNSLEGKIPDAFGPKSYFMVLDLSYNKLSGP-IPRTLSGTSYIGYLDLSHNNLCGKI 340 (369)
Q Consensus 285 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~g~i 340 (369)
+|.+.+. ..+..+=+|..||+++|+|... .-..++++|.|+.+.+.+|.+.+.+
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9887632 2356666788999999998742 3456789999999999999998543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.7e-12 Score=115.36 Aligned_cols=110 Identities=24% Similarity=0.246 Sum_probs=50.2
Q ss_pred CCCCCEEEcccCCCcc-ccccccCCCCCCcEEeccCCcccccCCccc-CcCCCCEEEccCCcCCccC-CcCcCCCCCCCE
Q 037720 228 VYRLTDLDLSTNQISG-PIPASLGKMPDLSTLNLDFNRFSGVIPASL-LTSGVNNLNLSKNSLEGKI-PDAFGPKSYFMV 304 (369)
Q Consensus 228 l~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~ 304 (369)
++.|+.|.++.|+++. .+-..+..+|+|+.|++.+|.....-.... ....|++|+|++|++.+.. -...+.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 3455555555555541 112223345555666665553111100000 0145556666655554211 123455555666
Q ss_pred EEccCCCCCCC-Cccc-----CcCCCCcCEEEcccCcCc
Q 037720 305 LDLSYNKLSGP-IPRT-----LSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 305 L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~ls~N~l~ 337 (369)
|+++.+.+++. +|+. ...+++|++|+++.|++.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 66665555532 2222 234555666666666554
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=1e-12 Score=115.76 Aligned_cols=236 Identities=21% Similarity=0.259 Sum_probs=160.1
Q ss_pred cCccccCCCCCCEEecCCCCCCccc----CCcCCCCCCCCcEEEccCCc---CCccCCc-------cccCCCCCCEEEee
Q 037720 100 ISPAVCKLPHLSSLTLTDWEGISGE----IPRCSTLLPFLRILDLTGNK---ISGEIPR-------HIGKLHRLSVLNIA 165 (369)
Q Consensus 100 ~~~~l~~l~~L~~L~L~~~~~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~-------~l~~l~~L~~L~L~ 165 (369)
+-+.+..+..+++++|++ |.+... +-..+.+.+.|+..++++-- ....+|+ ++..+++|++|||+
T Consensus 22 v~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 334566778899999996 555432 34556677889999988642 2223443 44567899999999
Q ss_pred cccCCCCCCcc----ccCCCCCcEEEeecccccCC-------------CCcccCCCCCCcEEEccCCccccc----CCcc
Q 037720 166 DNYVSGPIPGS----IGNLSSLMHLDVRNNRISGP-------------IPGCFGRLHMLSRALLSGNQISGT----IPSS 224 (369)
Q Consensus 166 ~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~l~~~----~~~~ 224 (369)
.|-+....+.. +.++.+|++|.|.+|.+... ......+-++|+.+....|++... +...
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 99887444433 45678999999999987621 112244567888888888887532 2345
Q ss_pred ccCCCCCCEEEcccCCCc--c--ccccccCCCCCCcEEeccCCcccccCCcccCc-----CCCCEEEccCCcCCccCCcC
Q 037720 225 ISRVYRLTDLDLSTNQIS--G--PIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-----SGVNNLNLSKNSLEGKIPDA 295 (369)
Q Consensus 225 l~~l~~L~~L~ls~n~l~--~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~ 295 (369)
+...+.|+.+.+..|.+. | .+...+..+++|+.|+|.+|.++......+.. +.|+.|++++|.+...-...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 667788888888888874 1 23345778888999999888887432222211 67888888888877543322
Q ss_pred c-----CCCCCCCEEEccCCCCCCC----CcccCcCCCCcCEEEcccCcC
Q 037720 296 F-----GPKSYFMVLDLSYNKLSGP----IPRTLSGTSYIGYLDLSHNNL 336 (369)
Q Consensus 296 l-----~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~N~l 336 (369)
+ ...+.|++|.+.+|.|+.. +..++...+.|..|+|++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 2367888888888888743 233445577888888888888
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-11 Score=112.33 Aligned_cols=207 Identities=23% Similarity=0.259 Sum_probs=104.8
Q ss_pred cCCCCCCEEecCCCCCCcccCC--cCCCCCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEeecccCCCCCCc-cccC
Q 037720 105 CKLPHLSSLTLTDWEGISGEIP--RCSTLLPFLRILDLTGNKISGE--IPRHIGKLHRLSVLNIADNYVSGPIPG-SIGN 179 (369)
Q Consensus 105 ~~l~~L~~L~L~~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~ 179 (369)
+++.+|+++.|.+ ..+. ..+ .....+++++.|||++|-+..- +-.....+++|+.|+|+.|++.-.... .-..
T Consensus 118 sn~kkL~~IsLdn-~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDN-YRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecC-cccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 4566666666663 2222 111 2345567777777777766522 222344667777777777766522111 1123
Q ss_pred CCCCcEEEeecccccCC-CCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcccc-ccccCCCCCCcE
Q 037720 180 LSSLMHLDVRNNRISGP-IPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPI-PASLGKMPDLST 257 (369)
Q Consensus 180 l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~ 257 (369)
+++|+.|.++.|.++.. +...+..+++|+.|++..|............+..|+.|||++|.+.... -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 45666777777666521 2223445666677777666422222233344556666777766654211 134456666666
Q ss_pred EeccCCcccccCCccc-------CcCCCCEEEccCCcCCcc-CCcCcCCCCCCCEEEccCCCCC
Q 037720 258 LNLDFNRFSGVIPASL-------LTSGVNNLNLSKNSLEGK-IPDAFGPKSYFMVLDLSYNKLS 313 (369)
Q Consensus 258 L~L~~n~l~~~~~~~~-------~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~ 313 (369)
|+++.+.+....-... ..++|++|++..|++.+. .-..+..+++|+.|.+-.|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666666654321111 015566666666555321 0112333444455555555544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=8.4e-11 Score=101.97 Aligned_cols=202 Identities=23% Similarity=0.185 Sum_probs=129.7
Q ss_pred CccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEcc-CCcccccCCccccCC
Q 037720 150 PRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLS-GNQISGTIPSSISRV 228 (369)
Q Consensus 150 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l 228 (369)
|..+.-+.+|+.+.++++.-. .+-+....-+.|+++.+.+..++. .| .+--...+...... ..-.+|.....+...
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 333444556666666665433 111212223567777665554431 11 11111222111111 111223333444556
Q ss_pred CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEcc
Q 037720 229 YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLS 308 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 308 (369)
..|+++|+++|.++ .+.+...-.|.++.|+++.|.+... ...-..++|+.|||++|.++ .+..+-..+.+++.|.|+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 78999999999998 5667777889999999999999843 33222289999999999988 444455567789999999
Q ss_pred CCCCCCCCcccCcCCCCcCEEEcccCcCce--eCCCCCCCCCCCcccccCCCC
Q 037720 309 YNKLSGPIPRTLSGTSYIGYLDLSHNNLCG--KIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 309 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g--~ip~~~~~~~l~~l~~~~n~~ 359 (369)
+|.|. -...+.++-+|.+||+++|+|.. .+...+.++-|+.+.+.+||.
T Consensus 361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99986 34556788889999999999873 345556777777888899985
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.2e-10 Score=96.03 Aligned_cols=123 Identities=33% Similarity=0.439 Sum_probs=31.6
Q ss_pred CCCCcEEEccCCcCCccCCcccc-CCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCccc-CCCCCCcE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIG-KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCF-GRLHMLSR 209 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~ 209 (369)
..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++. +. .+..++.|++|++++|.++.. .+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 3345555666655552 2 2233 34555566666665552 22 344555556666666555532 2222 23555555
Q ss_pred EEccCCcccccC-CccccCCCCCCEEEcccCCCcccc---ccccCCCCCCcEEe
Q 037720 210 ALLSGNQISGTI-PSSISRVYRLTDLDLSTNQISGPI---PASLGKMPDLSTLN 259 (369)
Q Consensus 210 L~l~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~---~~~l~~l~~L~~L~ 259 (369)
|++++|++...- -..+..+++|+.|++.+|.++... ...+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 555555554211 123445555666666666554221 11234455666554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=1.6e-10 Score=95.34 Aligned_cols=101 Identities=27% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccC-cCCCCEEEccCCcCCccC-CcCcCCCCCCCEEE
Q 037720 229 YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLL-TSGVNNLNLSKNSLEGKI-PDAFGPKSYFMVLD 306 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 306 (369)
.+|+.|++++|+++.. +.+..++.|++|++++|.++...+.... .++|++|++++|++.+.- -..+..+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 3444444444444321 1233444444444444444422111001 144444444444444211 12344556666666
Q ss_pred ccCCCCCCCC---cccCcCCCCcCEEEc
Q 037720 307 LSYNKLSGPI---PRTLSGTSYIGYLDL 331 (369)
Q Consensus 307 Ls~n~l~~~~---~~~l~~l~~L~~L~l 331 (369)
+.+|.++... ...+..+|+|+.||-
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666655321 112345566666653
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=3e-10 Score=116.00 Aligned_cols=89 Identities=30% Similarity=0.398 Sum_probs=69.3
Q ss_pred ccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCC
Q 037720 102 PAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLS 181 (369)
Q Consensus 102 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (369)
..|..++.|++|||++ |.-.+.+|+.++.+-+|++|++++..+. .+|..+.++.+|.+|++..+.....+|.....+.
T Consensus 565 ~ff~~m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HHHhhCcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 3466788888888886 4445678888888888888888888888 7888888888888888888776555566666688
Q ss_pred CCcEEEeeccc
Q 037720 182 SLMHLDVRNNR 192 (369)
Q Consensus 182 ~L~~L~Ls~n~ 192 (369)
+|++|.+....
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 88888886654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=8.2e-10 Score=75.06 Aligned_cols=61 Identities=39% Similarity=0.563 Sum_probs=52.7
Q ss_pred CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcC
Q 037720 276 SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336 (369)
Q Consensus 276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 336 (369)
++|++|++++|+++...+..|.++++|++|++++|+++...+.+|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688899999988876667888999999999999999887788889999999999999875
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-10 Score=111.15 Aligned_cols=241 Identities=28% Similarity=0.278 Sum_probs=142.3
Q ss_pred CCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcE
Q 037720 106 KLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMH 185 (369)
Q Consensus 106 ~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (369)
.+..++.+++.. +.+. .+-..+..+..|+.|++.+|.+. .+...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~-n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccch-hhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 455566666652 3333 23344667778888888888887 33333667788888888888887432 3556666888
Q ss_pred EEeecccccCCCCcccCCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCc
Q 037720 186 LDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIP-SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNR 264 (369)
Q Consensus 186 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 264 (369)
|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 88888887632 345557788888888887774433 1 46677788888888877522 334444445555666666
Q ss_pred ccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCcee---C
Q 037720 265 FSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGK---I 340 (369)
Q Consensus 265 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~---i 340 (369)
++...+..... ..|+.+++++|++. ..+..+..+..+..|++++|++... ..+...+.+..+....|.+... .
T Consensus 220 i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 220 ISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred ceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 65332211111 12677777777776 3334566667777777777776632 1233444555555555555421 1
Q ss_pred CC--CCCCCCCCcccccCCCC
Q 037720 341 PA--GSPFDHLDASSFESNKC 359 (369)
Q Consensus 341 p~--~~~~~~l~~l~~~~n~~ 359 (369)
+. ....+.+....+.+||.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccccccccccccccccCcc
Confidence 11 23344455555555554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=8.5e-11 Score=111.98 Aligned_cols=198 Identities=29% Similarity=0.311 Sum_probs=148.8
Q ss_pred CCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcE
Q 037720 130 TLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 209 (369)
..+..++.+++..|.+.. +-..+..+.+|+.|++..|.+.. +...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhh
Confidence 346677788888888873 34457788999999999999984 4443778999999999999998543 4667777999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcccCCCccccc-cccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcC
Q 037720 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIP-ASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSL 288 (369)
Q Consensus 210 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l 288 (369)
|++.+|.+... ..+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.+...... -....+..+++..|.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~-~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL-DLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch-HHHHHHHHhhcccccc
Confidence 99999998733 345568999999999999984433 2 57889999999999988733222 1124555568888888
Q ss_pred CccCCcCcCCCC--CCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCce
Q 037720 289 EGKIPDAFGPKS--YFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 289 ~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
+..-+ +..+. +|+.+++++|.+. ..+..+..+..+..+++.+|++..
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 74333 22223 3899999999998 444677788899999999998873
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.90 E-value=2.3e-09 Score=66.93 Aligned_cols=39 Identities=49% Similarity=0.998 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCC-C--CCCCCCCcceEeC
Q 037720 28 PSDRAALLAFKSALHEPYIGIFNSWT-G--NDCCHNWYGVSCD 67 (369)
Q Consensus 28 ~~~~~~ll~~~~~~~~~~~~~~~~W~-~--~~~c~~w~gv~c~ 67 (369)
++|++||++||+++..++...+.+|+ . .+||. |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~-W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS-WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC-STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee-eccEEeC
Confidence 68999999999999976678899998 3 68997 9999995
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.3e-09 Score=74.13 Aligned_cols=59 Identities=32% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeeccc
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNR 192 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 192 (369)
+|++|++++|.++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444455555555555555554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.78 E-value=3.5e-11 Score=115.31 Aligned_cols=129 Identities=26% Similarity=0.314 Sum_probs=85.2
Q ss_pred CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCc-CcCCCCCCCEEEc
Q 037720 229 YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPD-AFGPKSYFMVLDL 307 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L 307 (369)
..|...+++.|.+. .+-..+.-++.|+.|+|++|+++..- ..-..++|+.|||++|.+. .+|. ....+ +|+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 34666667777765 34455666677777777777776433 2122267777777777776 3443 22333 3888888
Q ss_pred cCCCCCCCCcccCcCCCCcCEEEcccCcCce--eCCCCCCCCCCCcccccCCCCccCC
Q 037720 308 SYNKLSGPIPRTLSGTSYIGYLDLSHNNLCG--KIPAGSPFDHLDASSFESNKCLCGK 363 (369)
Q Consensus 308 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g--~ip~~~~~~~l~~l~~~~n~~~c~~ 363 (369)
++|.++. ...+.++++|+.||+++|-+.+ .+-+.+.+..|..+.++|||..|.+
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8888762 3346678888888888887775 3444566777888888899887753
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.3e-08 Score=104.04 Aligned_cols=234 Identities=23% Similarity=0.233 Sum_probs=141.3
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCC--C
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVS--G 171 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~ 171 (369)
|.-.+.+|..++++-+||+|++++ ..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+...... .
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~-t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSD-TGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccC-CCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 556688999999999999999995 6665 89999999999999999988766566777778999999999876522 1
Q ss_pred CCCccccCCCCCcEEEeecccccCCCCcccCCCCCCc----EEEccCCcccccCCccccCCCCCCEEEcccCCCcccccc
Q 037720 172 PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS----RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPA 247 (369)
Q Consensus 172 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 247 (369)
..-..+.++.+|+.+....... .+-..+..+.+|. .+.+.++... ..+..+..+.+|+.|.+.++........
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcc
Confidence 2223445556666666543332 1111223333333 2222222222 4455677888888998888887532222
Q ss_pred ccCC------CCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCC-CcccC
Q 037720 248 SLGK------MPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGP-IPRTL 320 (369)
Q Consensus 248 ~l~~------l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l 320 (369)
.... ++++..+...++..........+.++|+.|.+.++.....+.+....+..+..+-+..+.+.+. .-...
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l 815 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSL 815 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecC
Confidence 2111 2223333333332222222223447888888888776655555555555666556666666554 34444
Q ss_pred cCCCCcCEEEcc
Q 037720 321 SGTSYIGYLDLS 332 (369)
Q Consensus 321 ~~l~~L~~L~ls 332 (369)
+.++++..+.+.
T Consensus 816 ~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 816 GGLPQLYWLPLS 827 (889)
T ss_pred CCCceeEecccC
Confidence 445444444433
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=1.5e-08 Score=87.04 Aligned_cols=204 Identities=18% Similarity=0.183 Sum_probs=122.3
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceee----cCccccCCCCCCEEecCCCCCCcccCC-----------cCCCCCCCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGF----ISPAVCKLPHLSSLTLTDWEGISGEIP-----------RCSTLLPFL 135 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~~~~-----------~~~~~l~~L 135 (369)
..+++++|+| |.+... +...+.+-.+|+..+++ ..++|... ..+-+||+|
T Consensus 30 d~~~evdLSG-------------NtigtEA~e~l~~~ia~~~~L~vvnfs--d~ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 30 DELVEVDLSG-------------NTIGTEAMEELCNVIANVRNLRVVNFS--DAFTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred cceeEEeccC-------------CcccHHHHHHHHHHHhhhcceeEeehh--hhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 3678899999 655443 33345566778888877 35555422 334567888
Q ss_pred cEEEccCCcCCccCCc----cccCCCCCCEEEeecccCCCCCCcc-------------ccCCCCCcEEEeecccccCCCC
Q 037720 136 RILDLTGNKISGEIPR----HIGKLHRLSVLNIADNYVSGPIPGS-------------IGNLSSLMHLDVRNNRISGPIP 198 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~ 198 (369)
+.++||.|.|....|+ .+++-+.|.+|.+++|.+.-.-... ..+-+.|+.++...|++.. .+
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs 173 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GS 173 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-Cc
Confidence 8888888888755554 3456678888888888765211111 2234678888888877652 22
Q ss_pred c-----ccCCCCCCcEEEccCCcccccCC-----ccccCCCCCCEEEcccCCCcc----ccccccCCCCCCcEEeccCCc
Q 037720 199 G-----CFGRLHMLSRALLSGNQISGTIP-----SSISRVYRLTDLDLSTNQISG----PIPASLGKMPDLSTLNLDFNR 264 (369)
Q Consensus 199 ~-----~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~ 264 (369)
. .+..-.+|+++.+..|.+...-- ..+..+++|+.||+++|.++. .+...+..++.|++|.+.+|.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 1 12223567777777776642211 123456778888888887762 223445566777777777776
Q ss_pred ccccCCccc-------CcCCCCEEEccCCcCCc
Q 037720 265 FSGVIPASL-------LTSGVNNLNLSKNSLEG 290 (369)
Q Consensus 265 l~~~~~~~~-------~~~~L~~L~L~~n~l~~ 290 (369)
++......+ ..++|..|-..+|...+
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 654322221 11566666666665443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2e-08 Score=87.27 Aligned_cols=201 Identities=20% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCCCCCcEEEccCCcCCc--cCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccC-CCCcccCCCCC
Q 037720 130 TLLPFLRILDLTGNKISG--EIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG-PIPGCFGRLHM 206 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~ 206 (369)
...+.++.+||.+|.++. .+...+.++|.|++|+++.|++...+-..-....+|+.|.|.+..+.. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 346778888999888873 344446688889999999988874432221345688888888877653 23345667788
Q ss_pred CcEEEccCCcccccC--CccccCC-CCCCEEEcccCCCcc--ccccccCCCCCCcEEeccCCcccccCCcccCc--CCCC
Q 037720 207 LSRALLSGNQISGTI--PSSISRV-YRLTDLDLSTNQISG--PIPASLGKMPDLSTLNLDFNRFSGVIPASLLT--SGVN 279 (369)
Q Consensus 207 L~~L~l~~n~l~~~~--~~~l~~l-~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~ 279 (369)
+++|+++.|.+.... .+..... +.++++.+..|.... ..-..-..++++..+.+..|.+...-...... +.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 888888887443111 1111111 245555555544320 00011123456666777777665433222222 5666
Q ss_pred EEEccCCcCCcc-CCcCcCCCCCCCEEEccCCCCCCCCc----c--cCcCCCCcCEEE
Q 037720 280 NLNLSKNSLEGK-IPDAFGPKSYFMVLDLSYNKLSGPIP----R--TLSGTSYIGYLD 330 (369)
Q Consensus 280 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~----~--~l~~l~~L~~L~ 330 (369)
-|+|+.+++... .-+.+.++++|..|.+++|.+.+... . -++.+++++.|+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 777777776642 12456677777777777777654322 1 135566666655
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1e-09 Score=105.53 Aligned_cols=126 Identities=29% Similarity=0.351 Sum_probs=77.9
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCccc-CcCCCCEEEcc
Q 037720 206 MLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASL-LTSGVNNLNLS 284 (369)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~ 284 (369)
.|...+.++|.+. .+..++.-++.++.|++++|+++.. +.+..++.|++|||++|.+.. +|... ...+|..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence 4556666666665 4555666666777777777777643 256667777777777777763 33222 12457777777
Q ss_pred CCcCCccCCcCcCCCCCCCEEEccCCCCCCC-CcccCcCCCCcCEEEcccCcCc
Q 037720 285 KNSLEGKIPDAFGPKSYFMVLDLSYNKLSGP-IPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 285 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+|.++.. ..+.++++|+.||+++|-|.+. ....+..+..|+.|.|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7776632 2356677777777777776642 2223345556677777777664
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=4.1e-08 Score=85.40 Aligned_cols=209 Identities=21% Similarity=0.242 Sum_probs=138.2
Q ss_pred CCCCCCCCcEEEccCCcCCccC-Cccc-cCCCCCCEEEeecccCCC--CCCccccCCCCCcEEEeecccccCCCCcccCC
Q 037720 128 CSTLLPFLRILDLTGNKISGEI-PRHI-GKLHRLSVLNIADNYVSG--PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGR 203 (369)
Q Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~-~~~l-~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 203 (369)
.+..+..++.+.+.++.|..+- ...| ...+.++.+||.+|.++. .+...+.+++.|+.|+++.|.+...+...-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 3444556667777777775332 1223 357889999999999983 23344678999999999999987544332246
Q ss_pred CCCCcEEEccCCcccc-cCCccccCCCCCCEEEcccCCCcccc--ccccCC-CCCCcEEeccCC---------cccccCC
Q 037720 204 LHMLSRALLSGNQISG-TIPSSISRVYRLTDLDLSTNQISGPI--PASLGK-MPDLSTLNLDFN---------RFSGVIP 270 (369)
Q Consensus 204 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~l~~-l~~L~~L~L~~n---------~l~~~~~ 270 (369)
..+|+.|.+.+..+.- .....+..++.++.|+++.|.+.... .+.... -+.+++|++..| ++....
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F- 198 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF- 198 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc-
Confidence 6789999999887642 23345677888888888888443110 011111 123444444444 333222
Q ss_pred cccCcCCCCEEEccCCcCCcc-CCcCcCCCCCCCEEEccCCCCCCC-CcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 271 ASLLTSGVNNLNLSKNSLEGK-IPDAFGPKSYFMVLDLSYNKLSGP-IPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 271 ~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
+++..+-+..|.+... .......++.+..|+|+.|+|.+. -.+.+.++++|..|.+++|.+...+..
T Consensus 199 -----pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 199 -----PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred -----ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 6777888888877642 234566677888999999999753 346778899999999999988765544
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.3e-09 Score=90.02 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=95.6
Q ss_pred CCcEEEccCCcCCcc-CCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeeccc-ccCC-CCcccCCCCCCcEE
Q 037720 134 FLRILDLTGNKISGE-IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNR-ISGP-IPGCFGRLHMLSRA 210 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L 210 (369)
+|++|||++..++.. +-..+..+.+|+.|.++++++.+.+...+++..+|+.|+++.+. ++.. ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777766632 22335567777777777777776666667777777777777643 3211 11224566777777
Q ss_pred EccCCcccccCCccc-c-CCCCCCEEEcccCCCc---cccccccCCCCCCcEEeccCCc-ccccCCcccCc-CCCCEEEc
Q 037720 211 LLSGNQISGTIPSSI-S-RVYRLTDLDLSTNQIS---GPIPASLGKMPDLSTLNLDFNR-FSGVIPASLLT-SGVNNLNL 283 (369)
Q Consensus 211 ~l~~n~l~~~~~~~l-~-~l~~L~~L~ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~L 283 (369)
+++.+.+....-..+ . --.+|+.|+++++.-. ..+......+++|.+|||++|. ++......+.. +.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777666543221111 1 1145666666665321 1222233456777777776654 23222222333 66666666
Q ss_pred cCCcCCccCCc---CcCCCCCCCEEEccCC
Q 037720 284 SKNSLEGKIPD---AFGPKSYFMVLDLSYN 310 (369)
Q Consensus 284 ~~n~l~~~~~~---~l~~l~~L~~L~Ls~n 310 (369)
+.|.. .+|. .+...|.|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66643 2333 2445566666666554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=2.9e-07 Score=79.26 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=95.3
Q ss_pred cccCCCCCCEEecCCCCCCccc----CCcCCCCCCCCcEEEccCCcCC---ccCC-------ccccCCCCCCEEEeeccc
Q 037720 103 AVCKLPHLSSLTLTDWEGISGE----IPRCSTLLPFLRILDLTGNKIS---GEIP-------RHIGKLHRLSVLNIADNY 168 (369)
Q Consensus 103 ~l~~l~~L~~L~L~~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~---~~~~-------~~l~~l~~L~~L~L~~n~ 168 (369)
.+..+..++.++||+ |.+... +...+.+-.+|+..+++.-... ..++ +++.+||+|+..+|+.|.
T Consensus 25 el~~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 345578888999997 555543 3344566778888888754221 1222 355688999999999998
Q ss_pred CCCCCCcc----ccCCCCCcEEEeecccccCCCCcc-------------cCCCCCCcEEEccCCcccccCC----ccccC
Q 037720 169 VSGPIPGS----IGNLSSLMHLDVRNNRISGPIPGC-------------FGRLHMLSRALLSGNQISGTIP----SSISR 227 (369)
Q Consensus 169 l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~l~~~~~----~~l~~ 227 (369)
+....|+. +++-+.|.+|.+++|.+...-..- ..+-+.|+.+....|++..... ..+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 88666654 456678888888888775221111 2234566666666666542111 11223
Q ss_pred CCCCCEEEcccCCCccc-----cccccCCCCCCcEEeccCCccc
Q 037720 228 VYRLTDLDLSTNQISGP-----IPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 228 l~~L~~L~ls~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
...|+++.+..|.|... .-..+..+.+|+.|++++|-++
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 34566666666665411 1112234556666666666554
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1e-08 Score=89.11 Aligned_cols=154 Identities=22% Similarity=0.247 Sum_probs=72.9
Q ss_pred CCcEEEeecccccC-CCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCC-Cccc-cccccCCCCCCcEE
Q 037720 182 SLMHLDVRNNRISG-PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQ-ISGP-IPASLGKMPDLSTL 258 (369)
Q Consensus 182 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~-~~~~l~~l~~L~~L 258 (369)
.|++|||++..++. .+...+..+.+|+.|.+.++++.+.+...+.+-.+|+.++++.+. ++.. ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35666666655542 122234455666666666666665555556666666666665532 2211 11234556666666
Q ss_pred eccCCcccccCCcc-cCc--CCCCEEEccCCcCC--c-cCCcCcCCCCCCCEEEccCCC-CCCCCcccCcCCCCcCEEEc
Q 037720 259 NLDFNRFSGVIPAS-LLT--SGVNNLNLSKNSLE--G-KIPDAFGPKSYFMVLDLSYNK-LSGPIPRTLSGTSYIGYLDL 331 (369)
Q Consensus 259 ~L~~n~l~~~~~~~-~~~--~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~l 331 (369)
+++.+.+....-.. ... ++++.|+++++.-. . .+..-...+++|..|||++|. ++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66665544222111 111 45555555554211 0 111112345555555555543 33333334445555555555
Q ss_pred ccCc
Q 037720 332 SHNN 335 (369)
Q Consensus 332 s~N~ 335 (369)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5543
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=2.3e-05 Score=72.89 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecc
Q 037720 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN 191 (369)
Q Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 191 (369)
+..++++++|++++|.++ .+|. + -++|++|.++++.--..+|..+. .+|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 334577888888888777 4452 1 23588888876433234554332 46777777776
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=1e-07 Score=73.71 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=38.3
Q ss_pred CCCCcEEEccCCcCCccCCcccc-CCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIG-KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRA 210 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 210 (369)
...|+.++|++|.+. ..|+.|. +.+.++.|++++|.+. .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344445555555554 3333332 3334555555555554 34444555555555555555544 333333334444444
Q ss_pred EccCCcc
Q 037720 211 LLSGNQI 217 (369)
Q Consensus 211 ~l~~n~l 217 (369)
+..+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 4444433
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=6.7e-06 Score=51.34 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=22.6
Q ss_pred CCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 301 YFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 301 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666777777766 34555667777777777777666
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=1.8e-07 Score=72.34 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=45.8
Q ss_pred CCCcEEeccCCcccccCCcccCc--CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEE
Q 037720 253 PDLSTLNLDFNRFSGVIPASLLT--SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLD 330 (369)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 330 (369)
..|+..++++|.+.+. |..+.. +.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||
T Consensus 53 ~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 3444455555555532 222222 35555666666555 45555666666666666666655 4444444555555666
Q ss_pred cccCcCceeCCCC
Q 037720 331 LSHNNLCGKIPAG 343 (369)
Q Consensus 331 ls~N~l~g~ip~~ 343 (369)
.-+|.+. .||..
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 5555554 44443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=8.2e-06 Score=50.95 Aligned_cols=36 Identities=36% Similarity=0.629 Sum_probs=20.7
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCC
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVS 170 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 170 (369)
+|++|++++|.++ .+|+.+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 34445666666666666666655
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=4.7e-06 Score=83.54 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCCCEEEeecccCCC-CCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccc-cCCccccCCCCCCE
Q 037720 156 LHRLSVLNIADNYVSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG-TIPSSISRVYRLTD 233 (369)
Q Consensus 156 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~ 233 (369)
+|.|+.|.+.+-.+.. .+-....++++|..||+|+..++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555555544331 1112234455555555555555422 345555555555555443331 11123445566666
Q ss_pred EEcccCCCcccc------ccccCCCCCCcEEeccCCcccccC
Q 037720 234 LDLSTNQISGPI------PASLGKMPDLSTLNLDFNRFSGVI 269 (369)
Q Consensus 234 L~ls~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~ 269 (369)
||+|........ -+.-..+|.|+.||.++..+.+..
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 666654432110 011123566666666666555433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=6.8e-05 Score=62.15 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCC-CcccCCCCCCcEEEc
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPI-PGCFGRLHMLSRALL 212 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~l 212 (369)
....+||++|.+.. -..|..++.|.+|.+.+|+|+...|.--..+++|+.|.+.+|.+.... -.-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34556666666541 223555666666666666666444433333455666666666654211 122455566666666
Q ss_pred cCCcccccC---CccccCCCCCCEEEccc
Q 037720 213 SGNQISGTI---PSSISRVYRLTDLDLST 238 (369)
Q Consensus 213 ~~n~l~~~~---~~~l~~l~~L~~L~ls~ 238 (369)
-+|..+..- --.+..+++|+.||++.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 666554211 12334555566665543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=4.5e-06 Score=83.69 Aligned_cols=152 Identities=22% Similarity=0.228 Sum_probs=96.0
Q ss_pred CCCCCEEecCCCCCCcccCCcCCC-CCCCCcEEEccCCcCCcc-CCccccCCCCCCEEEeecccCCCCCCccccCCCCCc
Q 037720 107 LPHLSSLTLTDWEGISGEIPRCST-LLPFLRILDLTGNKISGE-IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLM 184 (369)
Q Consensus 107 l~~L~~L~L~~~~~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (369)
-.+|++|+++|...+...-|..++ .+|.|+.|.+++-.+... ......++++|..||++++.++.. ..++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 357888888774444444444443 478888888888766432 223345778888888888888733 5677888888
Q ss_pred EEEeecccccC-CCCcccCCCCCCcEEEccCCcccccC--C----ccccCCCCCCEEEcccCCCccccccc-cCCCCCCc
Q 037720 185 HLDVRNNRISG-PIPGCFGRLHMLSRALLSGNQISGTI--P----SSISRVYRLTDLDLSTNQISGPIPAS-LGKMPDLS 256 (369)
Q Consensus 185 ~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~ 256 (369)
.|.+.+-.+.. ..-..+.++++|+.||++........ . +.-..+++||.||.|++.+.+.+-+. +..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88887765542 12234667888888888876554221 1 11245788888888888776443322 23345555
Q ss_pred EEec
Q 037720 257 TLNL 260 (369)
Q Consensus 257 ~L~L 260 (369)
.+..
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 5443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00031 Score=65.51 Aligned_cols=139 Identities=14% Similarity=0.239 Sum_probs=88.2
Q ss_pred ccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCC
Q 037720 153 IGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232 (369)
Q Consensus 153 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 232 (369)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.-...+|..+ ..+|++|.+++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445788999999999888 5562 2 2469999998865444566544 35899999998843334543 477
Q ss_pred EEEcccCCCccccccccCCC-CCCcEEeccCCc-ccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCC
Q 037720 233 DLDLSTNQISGPIPASLGKM-PDLSTLNLDFNR-FSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYN 310 (369)
Q Consensus 233 ~L~ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 310 (369)
.|+++.+.... +..+ ++|+.|.+.+++ ..........+++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 78887665431 1222 356777775432 1111111123378999999988866 3454443 57899998876
Q ss_pred C
Q 037720 311 K 311 (369)
Q Consensus 311 ~ 311 (369)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 3
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=0.00026 Score=55.53 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCc
Q 037720 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208 (369)
Q Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 208 (369)
|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +...-...|.++++++.+.+.. .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444442 233233334444444554444442 3322223344444455554433 22212223344444455
Q ss_pred EEEccC
Q 037720 209 RALLSG 214 (369)
Q Consensus 209 ~L~l~~ 214 (369)
.+.+..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 444433
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=0.00032 Score=55.06 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=67.1
Q ss_pred ccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCC
Q 037720 102 PAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLS 181 (369)
Q Consensus 102 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (369)
.++.++++|+.+.+. +.+...-...|.++++|+.+.+.++ +.......|.+++.|+.+.+.. .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~--~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFP--NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEET--ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEEC--CCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 457778899999987 3455444566888889999999875 6655566788888899999965 44423345677789
Q ss_pred CCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCC
Q 037720 182 SLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232 (369)
Q Consensus 182 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 232 (369)
+|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999998765 554445567776 888888765 33334445666665553
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00016 Score=60.01 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCC-cccCcCCCCcCEEEc
Q 037720 253 PDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPI-PRTLSGTSYIGYLDL 331 (369)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~l 331 (369)
.+...++|++|.+... +..-..+.|.+|.+.+|+|+.+-|.--.-+++|+.|.|.+|.|.... .+-+..+|+|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4566777877777532 21112267778888888877655554444566778888887775321 233456777777777
Q ss_pred ccCcCceeCC----CCCCCCCCCcccccC
Q 037720 332 SHNNLCGKIP----AGSPFDHLDASSFES 356 (369)
Q Consensus 332 s~N~l~g~ip----~~~~~~~l~~l~~~~ 356 (369)
-+|..+..-- ....+++++.+||++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777662211 123456666666653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=8e-05 Score=64.17 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=5.9
Q ss_pred CCCcEEEeecccc
Q 037720 181 SSLMHLDVRNNRI 193 (369)
Q Consensus 181 ~~L~~L~Ls~n~l 193 (369)
++|+++++++|++
T Consensus 91 P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 91 PNLKVLNLSGNKI 103 (260)
T ss_pred CceeEEeecCCcc
Confidence 4444444444444
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.12 E-value=7.2e-06 Score=74.82 Aligned_cols=232 Identities=17% Similarity=0.070 Sum_probs=127.4
Q ss_pred ccCCCCCCEEecCCCCCCcccCCcCC-CCCCCCcEEEccCC-cCCccCCc-cccCCCCCCEEEeeccc-CCCC-CCcccc
Q 037720 104 VCKLPHLSSLTLTDWEGISGEIPRCS-TLLPFLRILDLTGN-KISGEIPR-HIGKLHRLSVLNIADNY-VSGP-IPGSIG 178 (369)
Q Consensus 104 l~~l~~L~~L~L~~~~~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~-~~~~~~ 178 (369)
...++++++|++.+|..++...-..+ ..+++|++|++..| .+|...-. -...+++|++|+++.+. +++. +...+.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 35677888888877666654433233 35677788887774 44432222 23467778888877764 2220 111223
Q ss_pred CCCCCcEEEeecccc---------------------------cCC-CCcccCCCCCCcEEEccCCcccccCC--ccccCC
Q 037720 179 NLSSLMHLDVRNNRI---------------------------SGP-IPGCFGRLHMLSRALLSGNQISGTIP--SSISRV 228 (369)
Q Consensus 179 ~l~~L~~L~Ls~n~l---------------------------~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l 228 (369)
+...++.+.+.++.- +.. +...-..+..|+.+..+++...+..+ .--.+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 334444443333211 100 00001124455666665544321111 112456
Q ss_pred CCCCEEEcccCCC-cccccccc-CCCCCCcEEeccCCcccccC--CcccCc-CCCCEEEccCCcCCccC-----CcCcCC
Q 037720 229 YRLTDLDLSTNQI-SGPIPASL-GKMPDLSTLNLDFNRFSGVI--PASLLT-SGVNNLNLSKNSLEGKI-----PDAFGP 298 (369)
Q Consensus 229 ~~L~~L~ls~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~--~~~~~~-~~L~~L~L~~n~l~~~~-----~~~l~~ 298 (369)
.+|+.+.++.++. +..-...+ .+++.|+.+++.++...-.. ...... +.|+.+.++++.+.... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 7888888887763 21111112 45678888888877543221 111111 78888888887643221 222345
Q ss_pred CCCCCEEEccCCC-CCCCCcccCcCCCCcCEEEcccCc
Q 037720 299 KSYFMVLDLSYNK-LSGPIPRTLSGTSYIGYLDLSHNN 335 (369)
Q Consensus 299 l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N~ 335 (369)
+..|..+.|+++. +++...+.+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6778889999887 455566777888899999988874
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00029 Score=60.79 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=61.4
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCC--cCCccCCccccCCCCCCEEEeecccCCCC-CCcc
Q 037720 100 ISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGN--KISGEIPRHIGKLHRLSVLNIADNYVSGP-IPGS 176 (369)
Q Consensus 100 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~ 176 (369)
+....-.+..|+.|++.+ ..++.. ..+-.+++|++|.++.| .+.+.++.....+++|++|++++|++... .-..
T Consensus 35 ~~gl~d~~~~le~ls~~n-~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVIN-VGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhc-cceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 444444556666677663 444321 23556889999999999 66666666666779999999999998731 1123
Q ss_pred ccCCCCCcEEEeecccccC
Q 037720 177 IGNLSSLMHLDVRNNRISG 195 (369)
Q Consensus 177 ~~~l~~L~~L~Ls~n~l~~ 195 (369)
+..+.+|..|++.+|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 4556677777777776553
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0057 Score=31.72 Aligned_cols=16 Identities=63% Similarity=0.982 Sum_probs=7.7
Q ss_pred cCEEEcccCcCceeCCC
Q 037720 326 IGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 326 L~~L~ls~N~l~g~ip~ 342 (369)
|++||+++|+++ .+|+
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 444555555444 4444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.00049 Score=59.99 Aligned_cols=83 Identities=20% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCC-ccccCCCCCCEEE
Q 037720 157 HRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIP-SSISRVYRLTDLD 235 (369)
Q Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ 235 (369)
.+.+.|+.-++.++++ .....|+.|+.|.|+-|+|+.. ..+..+++|++|+|..|.+...-. .-+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455566666655522 2234566666666666666532 235566666666666665542110 1235556666666
Q ss_pred cccCCCcc
Q 037720 236 LSTNQISG 243 (369)
Q Consensus 236 ls~n~l~~ 243 (369)
|..|.-.+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 66555443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0064 Score=31.52 Aligned_cols=18 Identities=44% Similarity=0.848 Sum_probs=8.4
Q ss_pred CcEEEccCCcCCccCCccc
Q 037720 135 LRILDLTGNKISGEIPRHI 153 (369)
Q Consensus 135 L~~L~L~~n~l~~~~~~~l 153 (369)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 344333
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.12 E-value=0.00098 Score=64.72 Aligned_cols=112 Identities=20% Similarity=0.191 Sum_probs=59.8
Q ss_pred CCCCCCEEecCCCCCCccc-CCcCCCCCCCCcEEEccCC-cCCccC----CccccCCCCCCEEEeeccc-CCCCCCcccc
Q 037720 106 KLPHLSSLTLTDWEGISGE-IPRCSTLLPFLRILDLTGN-KISGEI----PRHIGKLHRLSVLNIADNY-VSGPIPGSIG 178 (369)
Q Consensus 106 ~l~~L~~L~L~~~~~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 178 (369)
.++.|+.|.+.++..+... +-.....++.|+.|+++++ ...... ......+++|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3677777777765444432 2233456777788887763 111111 1223455777777777766 4432222222
Q ss_pred C-CCCCcEEEeeccc-ccCC-CCcccCCCCCCcEEEccCCcc
Q 037720 179 N-LSSLMHLDVRNNR-ISGP-IPGCFGRLHMLSRALLSGNQI 217 (369)
Q Consensus 179 ~-l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l 217 (369)
. +++|++|.+.++. ++.. +......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 5677777766555 3322 112233556677777776654
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.00052 Score=59.83 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccC-CcCcCCCCCCCEEE
Q 037720 228 VYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKI-PDAFGPKSYFMVLD 306 (369)
Q Consensus 228 l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 306 (369)
+.+.+.|++.+|+++.+ .....++.|+.|.|+-|.|+...|. ...++|++|.|..|.|.+.- -..+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPL-QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhH-HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 45678888888888743 4567788888888888888744332 22277888888888776421 13467778888888
Q ss_pred ccCCCCCCCCccc-----CcCCCCcCEEE
Q 037720 307 LSYNKLSGPIPRT-----LSGTSYIGYLD 330 (369)
Q Consensus 307 Ls~n~l~~~~~~~-----l~~l~~L~~L~ 330 (369)
|..|.=.|..+.. +.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 8877655544322 33455666554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.93 E-value=0.0017 Score=63.11 Aligned_cols=130 Identities=22% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEeecc-cCCCCCC----ccccCCCCCcEEEeeccc-ccCCCCcccC
Q 037720 131 LLPFLRILDLTGNKISGE--IPRHIGKLHRLSVLNIADN-YVSGPIP----GSIGNLSSLMHLDVRNNR-ISGPIPGCFG 202 (369)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~ 202 (369)
.++.|+.+.+..+.-... .-.....+++|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367888888887743322 3344567888999998873 1111111 223445788888888877 4433323333
Q ss_pred -CCCCCcEEEccCCc-cccc-CCccccCCCCCCEEEcccCCCcc--ccccccCCCCCCcEEec
Q 037720 203 -RLHMLSRALLSGNQ-ISGT-IPSSISRVYRLTDLDLSTNQISG--PIPASLGKMPDLSTLNL 260 (369)
Q Consensus 203 -~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~L 260 (369)
.+++|++|.+.++. ++.. +-.....++.|++|+++.+.... .+.....++++++.+.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 27788888877666 3322 22233567778999988776531 12222344555555443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.46 E-value=8.1e-05 Score=71.63 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=58.7
Q ss_pred CcEEEccCCcCCccC----CccccCCCCCCEEEeecccCCCCCC----ccccCC-CCCcEEEeecccccCC----CCccc
Q 037720 135 LRILDLTGNKISGEI----PRHIGKLHRLSVLNIADNYVSGPIP----GSIGNL-SSLMHLDVRNNRISGP----IPGCF 201 (369)
Q Consensus 135 L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l 201 (369)
+..+.+.+|.+.... -..+...+.|+.|++++|.+.+.-. ..+... ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888776432 2345567778888888887773211 112222 4556666666666532 22334
Q ss_pred CCCCCCcEEEccCCcccc----cCCcccc----CCCCCCEEEcccCCCc
Q 037720 202 GRLHMLSRALLSGNQISG----TIPSSIS----RVYRLTDLDLSTNQIS 242 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~ls~n~l~ 242 (369)
.....++.+++..|.+.. .++..+. ...++++|++++|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 445566666666665521 1122222 3455556666665554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.18 E-value=9.4e-05 Score=71.18 Aligned_cols=182 Identities=21% Similarity=0.288 Sum_probs=118.4
Q ss_pred CCCCEEecCCCCCCccc----CCcCCCCCCCCcEEEccCCcCCccCC----ccccCC-CCCCEEEeecccCCCC----CC
Q 037720 108 PHLSSLTLTDWEGISGE----IPRCSTLLPFLRILDLTGNKISGEIP----RHIGKL-HRLSVLNIADNYVSGP----IP 174 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l-~~L~~L~L~~n~l~~~----~~ 174 (369)
..+.+|.|.+ +.+... +-..+...+.|+.|++++|.+.+..- ..+... ..+++|++..+.++.. +.
T Consensus 87 ~~l~~L~L~~-~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 87 ASLLHLSLAN-NRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred hhHHHhhhhh-CccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 3477788885 444432 22445667889999999999984321 223332 5678888888888743 34
Q ss_pred ccccCCCCCcEEEeecccccC----CCCccc----CCCCCCcEEEccCCcccccC----CccccCCCC-CCEEEcccCCC
Q 037720 175 GSIGNLSSLMHLDVRNNRISG----PIPGCF----GRLHMLSRALLSGNQISGTI----PSSISRVYR-LTDLDLSTNQI 241 (369)
Q Consensus 175 ~~~~~l~~L~~L~Ls~n~l~~----~~~~~l----~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~-L~~L~ls~n~l 241 (369)
..+.....++.++++.|.+.. .++..+ ....++++|.+.++.++... ...+...+. ++.+++..|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 456667889999999998741 122333 34778999999999876321 233444555 77788888887
Q ss_pred ccc----cccccCCC-CCCcEEeccCCcccccCCcccCc-----CCCCEEEccCCcCCc
Q 037720 242 SGP----IPASLGKM-PDLSTLNLDFNRFSGVIPASLLT-----SGVNNLNLSKNSLEG 290 (369)
Q Consensus 242 ~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~ 290 (369)
.+. ....+..+ ..++.++++.|.+++........ +.++++.+++|.+.+
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 633 22334444 67788888888887554433322 677888888887764
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.90 E-value=0.034 Score=26.73 Aligned_cols=13 Identities=46% Similarity=0.570 Sum_probs=5.0
Q ss_pred CcCEEEcccCcCc
Q 037720 325 YIGYLDLSHNNLC 337 (369)
Q Consensus 325 ~L~~L~ls~N~l~ 337 (369)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.011 Score=49.36 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCC-CCCCCcEEEccCC-cCCccC
Q 037720 72 QVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCST-LLPFLRILDLTGN-KISGEI 149 (369)
Q Consensus 72 ~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~ 149 (369)
.|..+|-++ ..+...--..+.+++.++.|.+.+|..+..-..+.++ -.++|+.|++++| .||..-
T Consensus 102 ~IeaVDAsd-------------s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 102 KIEAVDASD-------------SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred eEEEEecCC-------------chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 467777776 4455555566777888888888776665543333332 2467777888766 455444
Q ss_pred CccccCCCCCCEEEeec
Q 037720 150 PRHIGKLHRLSVLNIAD 166 (369)
Q Consensus 150 ~~~l~~l~~L~~L~L~~ 166 (369)
-..+.++++|+.|.+.+
T Consensus 169 L~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHHhhhhHHHHhcC
Confidence 44555666666666654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.99 E-value=0.46 Score=25.41 Aligned_cols=13 Identities=54% Similarity=0.565 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCC
Q 037720 301 YFMVLDLSYNKLS 313 (369)
Q Consensus 301 ~L~~L~Ls~n~l~ 313 (369)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.99 E-value=0.46 Score=25.41 Aligned_cols=13 Identities=54% Similarity=0.565 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCC
Q 037720 301 YFMVLDLSYNKLS 313 (369)
Q Consensus 301 ~L~~L~Ls~n~l~ 313 (369)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.97 E-value=0.074 Score=28.03 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=6.2
Q ss_pred CCCCEEEccCCCCCC
Q 037720 300 SYFMVLDLSYNKLSG 314 (369)
Q Consensus 300 ~~L~~L~Ls~n~l~~ 314 (369)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.59 E-value=0.22 Score=46.37 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=93.4
Q ss_pred CCCCCEEecCCCCCCcccCCcCC-CCCCCCcEEEccCCcCC-ccCCccc-cCCCCCCEEEeecccC-CCCCCccc-cCCC
Q 037720 107 LPHLSSLTLTDWEGISGEIPRCS-TLLPFLRILDLTGNKIS-GEIPRHI-GKLHRLSVLNIADNYV-SGPIPGSI-GNLS 181 (369)
Q Consensus 107 l~~L~~L~L~~~~~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~l-~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~ 181 (369)
+..+.++++..|+.++..--..+ ..+..|++|+.+++... ..+-.++ .+..+|+.|-++.++- +..--..+ .+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 45566777766666664432222 35677888888876543 2222233 3678888888888762 21111111 3567
Q ss_pred CCcEEEeeccccc--CCCCcccCCCCCCcEEEccCCcccccC-----CccccCCCCCCEEEcccCCCc-cccccccCCCC
Q 037720 182 SLMHLDVRNNRIS--GPIPGCFGRLHMLSRALLSGNQISGTI-----PSSISRVYRLTDLDLSTNQIS-GPIPASLGKMP 253 (369)
Q Consensus 182 ~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~-~~~~~~l~~l~ 253 (369)
.|+.+++..+... +.+...-.+++.|+.+.++++...... ...-..+..|+.+.++++... ...-+.+..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 8888888776643 223333446788888888877543111 122234567888888887754 23334566778
Q ss_pred CCcEEeccCCc
Q 037720 254 DLSTLNLDFNR 264 (369)
Q Consensus 254 ~L~~L~L~~n~ 264 (369)
+|+.+++-++.
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 88888876654
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.86 E-value=0.019 Score=49.04 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=48.6
Q ss_pred ccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCC
Q 037720 153 IGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLT 232 (369)
Q Consensus 153 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 232 (369)
+....+.+.||++.|++. ..-..|.-++.+..|+++.|.+. ..|..+.....++.+++..|..+ ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 444555566666666554 23334444555566666666554 45555555555555555555554 5555666666666
Q ss_pred EEEcccCCCc
Q 037720 233 DLDLSTNQIS 242 (369)
Q Consensus 233 ~L~ls~n~l~ 242 (369)
+++...+.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666555543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.31 E-value=0.019 Score=49.05 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=68.7
Q ss_pred cCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCC
Q 037720 127 RCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHM 206 (369)
Q Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 206 (369)
..+......+.||++.|.+. ..-..|..++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34566777888888888776 34455667778888888888887 67777887778888888777776 67888888888
Q ss_pred CcEEEccCCccc
Q 037720 207 LSRALLSGNQIS 218 (369)
Q Consensus 207 L~~L~l~~n~l~ 218 (369)
++++++.++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888765
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.25 E-value=0.13 Score=43.05 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=19.5
Q ss_pred CCCEEEcccCCCccccccccCCCCCCcEEeccCCc
Q 037720 230 RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNR 264 (369)
Q Consensus 230 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 264 (369)
.++.+|-++..+...--+.+..+++++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45566666666654444455555666666555543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.11 E-value=1.3 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=12.4
Q ss_pred CCcCEEEcccCcCceeCCC
Q 037720 324 SYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 324 ~~L~~L~ls~N~l~g~ip~ 342 (369)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777777 5555
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.07 E-value=3 Score=22.49 Aligned_cols=13 Identities=46% Similarity=0.508 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCC
Q 037720 301 YFMVLDLSYNKLS 313 (369)
Q Consensus 301 ~L~~L~Ls~n~l~ 313 (369)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.34 E-value=2.9 Score=22.83 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=10.1
Q ss_pred CCcCEEEcccCcCc
Q 037720 324 SYIGYLDLSHNNLC 337 (369)
Q Consensus 324 ~~L~~L~ls~N~l~ 337 (369)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777788777775
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.56 E-value=5.4 Score=21.20 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=8.3
Q ss_pred CCCCEEecCCCCCCc
Q 037720 108 PHLSSLTLTDWEGIS 122 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~ 122 (369)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666554444
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.92 E-value=21 Score=34.26 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=6.3
Q ss_pred CCCCEEEccCCCC
Q 037720 300 SYFMVLDLSYNKL 312 (369)
Q Consensus 300 ~~L~~L~Ls~n~l 312 (369)
+.+..|++++|..
T Consensus 440 qtl~kldisgn~m 452 (553)
T KOG4242|consen 440 QTLAKLDISGNGM 452 (553)
T ss_pred cccccccccCCCc
Confidence 3445555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.61 E-value=4.2 Score=39.53 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCCCcEEeccCCcccccCCc-ccCc--CCCCEEEccCC--cCCccC-CcCcCCCCCCCEEEccCCCCCC
Q 037720 251 KMPDLSTLNLDFNRFSGVIPA-SLLT--SGVNNLNLSKN--SLEGKI-PDAFGPKSYFMVLDLSYNKLSG 314 (369)
Q Consensus 251 ~l~~L~~L~L~~n~l~~~~~~-~~~~--~~L~~L~L~~n--~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~ 314 (369)
+.+.+..+.|++|++...-.. .+.. ++|+.|+|++| .+.... -..++. ..|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 445666677777766532111 1111 67777777777 222110 011222 236667777776654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.13 E-value=7.9 Score=37.73 Aligned_cols=76 Identities=26% Similarity=0.235 Sum_probs=45.7
Q ss_pred CCCCEEEccCCcCCcc--CCcCcCCCCCCCEEEccCC--CCCCCCcccCc--CCCCcCEEEcccCcCceeCCC-------
Q 037720 276 SGVNNLNLSKNSLEGK--IPDAFGPKSYFMVLDLSYN--KLSGPIPRTLS--GTSYIGYLDLSHNNLCGKIPA------- 342 (369)
Q Consensus 276 ~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~--~l~~L~~L~ls~N~l~g~ip~------- 342 (369)
+.+..++|++|++... +...-...|+|+.|+|++| .+.. ..++. +...|++|-+.+|.+...--.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 6788888999887631 1111234577889999988 4432 22222 233578888888888754322
Q ss_pred -CCCCCCCCccc
Q 037720 343 -GSPFDHLDASS 353 (369)
Q Consensus 343 -~~~~~~l~~l~ 353 (369)
-..|++|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 12566666554
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.47 E-value=24 Score=33.93 Aligned_cols=32 Identities=19% Similarity=0.014 Sum_probs=17.4
Q ss_pred CCEEEccCCCCCCCCccc--CcCCCCcCEEEccc
Q 037720 302 FMVLDLSYNKLSGPIPRT--LSGTSYIGYLDLSH 333 (369)
Q Consensus 302 L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~ls~ 333 (369)
+++|.++.|.+.|+.-.. +...++.+.+++..
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccc
Confidence 666777777666544332 23344555555543
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.66 E-value=27 Score=40.99 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.8
Q ss_pred EccCCcCCccCCcCcCCCCCCCEEEccCCCCC
Q 037720 282 NLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLS 313 (369)
Q Consensus 282 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 313 (369)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998766678888899999999999876
No 93
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.43 E-value=65 Score=23.66 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHhh
Q 037720 5 AFHSTELLIIFLAVSSF 21 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (369)
+++..+++.++|+++..
T Consensus 2 aSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLL 18 (95)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 45565555545444433
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.51 E-value=53 Score=38.81 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=15.8
Q ss_pred CCCcccCCcCCCCCCCCcEEEccCCcCC
Q 037720 119 EGISGEIPRCSTLLPFLRILDLTGNKIS 146 (369)
Q Consensus 119 ~~l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (369)
|.+...-+..|..+++|++|+|++|.+.
T Consensus 5 N~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 5 NKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CcCCccChHHhccCCCceEEEeeCCccc
Confidence 4555444444555666666666666554
Done!