Query 037720
Match_columns 369
No_of_seqs 401 out of 4496
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-48 4.5E-53 357.4 23.7 304 25-369 2-312 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-43 4.2E-48 361.6 22.7 326 22-357 5-353 (768)
3 4eco_A Uncharacterized protein 100.0 6.9E-43 2.4E-47 348.7 19.6 311 27-358 28-468 (636)
4 3rgz_A Protein brassinosteroid 100.0 2.4E-41 8.2E-46 344.7 23.8 274 94-369 404-748 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 2.1E-40 7.1E-45 337.8 21.1 273 25-317 265-661 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 1.1E-36 3.6E-41 292.5 25.7 295 56-365 6-413 (455)
7 4fcg_A Uncharacterized protein 100.0 1.5E-36 5.3E-41 279.1 15.7 277 25-337 23-314 (328)
8 2id5_A Lingo-1, leucine rich r 100.0 7.2E-35 2.5E-39 281.5 23.8 291 61-365 13-338 (477)
9 3o6n_A APL1; leucine-rich repe 100.0 3.5E-34 1.2E-38 269.7 21.2 263 94-363 55-355 (390)
10 3oja_B Anopheles plasmodium-re 100.0 7.5E-34 2.6E-38 281.7 22.0 263 94-363 61-361 (597)
11 1ogq_A PGIP-2, polygalacturona 100.0 5.5E-35 1.9E-39 267.0 12.0 215 94-335 87-302 (313)
12 3t6q_A CD180 antigen; protein- 100.0 1.2E-33 4E-38 280.9 21.3 265 99-365 292-565 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-32 2.2E-36 268.3 27.0 141 224-365 419-563 (606)
14 3v47_A TOLL-like receptor 5B a 100.0 3.5E-32 1.2E-36 261.0 24.1 139 205-343 275-414 (455)
15 3t6q_A CD180 antigen; protein- 100.0 7.4E-32 2.5E-36 267.9 25.6 272 72-359 255-535 (606)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-31 4.9E-36 263.6 27.1 160 202-365 350-515 (562)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-31 5.2E-36 266.4 27.7 281 71-365 52-585 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-31 4.1E-36 261.7 25.4 264 94-365 55-486 (520)
19 2id5_A Lingo-1, leucine rich r 100.0 4E-32 1.4E-36 262.3 21.0 280 71-364 56-360 (477)
20 4eco_A Uncharacterized protein 100.0 6.7E-32 2.3E-36 269.4 20.2 283 71-363 273-603 (636)
21 2ft3_A Biglycan; proteoglycan, 100.0 5.5E-31 1.9E-35 242.5 23.9 276 61-358 35-331 (332)
22 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-32 2.3E-36 265.1 18.5 164 57-236 3-179 (549)
23 1xku_A Decorin; proteoglycan, 100.0 1E-30 3.4E-35 240.6 25.2 221 109-337 53-276 (330)
24 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-31 1.2E-35 266.7 23.3 271 94-365 339-627 (680)
25 2z80_A TOLL-like receptor 2, v 100.0 6E-32 2E-36 251.1 16.3 245 94-340 62-317 (353)
26 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-31 1.8E-35 271.1 24.5 283 61-359 16-374 (844)
27 2z63_A TOLL-like receptor 4, v 100.0 1.9E-30 6.5E-35 255.8 26.6 117 249-365 417-536 (570)
28 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-30 6.6E-35 257.7 26.6 124 71-195 32-167 (606)
29 3zyj_A Leucine-rich repeat-con 100.0 2.2E-30 7.6E-35 247.6 25.3 231 134-365 65-297 (440)
30 3zyi_A Leucine-rich repeat-con 100.0 2.2E-30 7.6E-35 248.4 25.0 231 134-365 76-308 (452)
31 1xku_A Decorin; proteoglycan, 100.0 4.5E-30 1.5E-34 236.2 25.4 278 60-358 32-330 (330)
32 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-31 2E-35 256.8 19.4 108 71-195 21-129 (520)
33 4fcg_A Uncharacterized protein 100.0 1.6E-30 5.3E-35 239.0 20.8 221 132-357 80-311 (328)
34 2z66_A Variable lymphocyte rec 100.0 1.2E-30 4.1E-35 237.4 19.1 232 108-341 28-265 (306)
35 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-30 1.3E-34 236.9 22.3 265 72-361 34-308 (332)
36 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-30 1.1E-34 259.7 23.3 249 71-333 25-305 (680)
37 2z66_A Variable lymphocyte rec 100.0 2.4E-30 8.2E-35 235.5 19.6 239 124-365 21-266 (306)
38 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-30 3.4E-34 261.7 24.9 271 71-359 48-393 (844)
39 3o6n_A APL1; leucine-rich repe 100.0 9.4E-30 3.2E-34 239.4 22.2 265 92-365 77-379 (390)
40 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-30 1.8E-34 251.5 20.6 65 298-364 449-514 (549)
41 1ozn_A Reticulon 4 receptor; N 100.0 3E-30 1E-34 232.4 17.2 234 107-342 31-266 (285)
42 4ecn_A Leucine-rich repeat pro 100.0 2E-29 6.9E-34 257.0 24.5 257 93-361 557-841 (876)
43 2z80_A TOLL-like receptor 2, v 100.0 1.6E-30 5.4E-35 241.5 14.9 254 108-364 52-318 (353)
44 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.6E-34 251.9 21.8 264 92-364 83-384 (597)
45 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-29 5.9E-34 248.7 22.3 268 71-359 52-462 (562)
46 3zyj_A Leucine-rich repeat-con 100.0 6.8E-29 2.3E-33 237.3 25.6 227 108-337 64-292 (440)
47 1wwl_A Monocyte differentiatio 100.0 5.4E-32 1.8E-36 247.1 3.1 234 94-338 53-310 (312)
48 3zyi_A Leucine-rich repeat-con 100.0 6.7E-29 2.3E-33 238.1 24.7 227 108-337 75-303 (452)
49 1ozn_A Reticulon 4 receptor; N 100.0 6.9E-29 2.4E-33 223.5 19.6 250 111-364 14-265 (285)
50 4fmz_A Internalin; leucine ric 100.0 2.8E-28 9.7E-33 225.6 21.6 259 71-359 66-345 (347)
51 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-27 5.7E-32 237.3 26.1 134 108-242 52-186 (635)
52 1wwl_A Monocyte differentiatio 100.0 2.4E-30 8.3E-35 236.1 4.5 247 104-360 39-309 (312)
53 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-27 1.9E-31 224.8 26.0 248 71-358 42-297 (457)
54 4fmz_A Internalin; leucine ric 100.0 3E-27 1E-31 218.7 21.8 260 71-361 44-325 (347)
55 3oja_A Leucine-rich immune mol 100.0 4.8E-29 1.6E-33 241.0 9.8 247 105-365 31-287 (487)
56 1o6v_A Internalin A; bacterial 100.0 3.3E-27 1.1E-31 227.2 22.3 259 71-359 68-365 (466)
57 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.8E-34 231.6 4.6 248 94-355 20-270 (317)
58 2o6q_A Variable lymphocyte rec 100.0 8.3E-27 2.8E-31 208.3 21.6 182 133-314 37-219 (270)
59 1o6v_A Internalin A; bacterial 99.9 1.1E-26 3.6E-31 223.7 22.4 216 130-361 174-389 (466)
60 2z63_A TOLL-like receptor 4, v 99.9 4.2E-27 1.4E-31 231.9 19.4 268 71-359 28-359 (570)
61 2z62_A TOLL-like receptor 4, v 99.9 1E-26 3.6E-31 208.3 19.1 208 134-342 29-242 (276)
62 3o53_A Protein LRIM1, AGAP0063 99.9 4.4E-28 1.5E-32 221.7 9.3 239 110-363 12-253 (317)
63 2z62_A TOLL-like receptor 4, v 99.9 2.7E-26 9.2E-31 205.6 19.4 208 108-316 28-240 (276)
64 3bz5_A Internalin-J, INLJ; leu 99.9 8.8E-26 3E-30 216.4 24.0 250 71-359 64-351 (457)
65 3oja_A Leucine-rich immune mol 99.9 1.9E-27 6.6E-32 229.8 12.5 221 129-363 30-253 (487)
66 2o6q_A Variable lymphocyte rec 99.9 2.9E-25 9.8E-30 198.3 23.5 203 135-340 18-221 (270)
67 1p9a_G Platelet glycoprotein I 99.9 8.1E-26 2.8E-30 203.9 20.0 202 129-337 6-208 (290)
68 1jl5_A Outer protein YOPM; leu 99.9 8.8E-26 3E-30 216.2 17.0 198 133-358 91-288 (454)
69 3rfs_A Internalin B, repeat mo 99.9 1.7E-25 6E-30 199.9 16.7 202 131-343 39-241 (272)
70 1p9a_G Platelet glycoprotein I 99.9 5.9E-25 2E-29 198.3 19.6 204 103-314 5-209 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-25 5.6E-30 221.1 17.1 261 48-359 11-296 (622)
72 1jl5_A Outer protein YOPM; leu 99.9 2.3E-24 7.7E-29 206.4 22.8 236 94-360 141-409 (454)
73 3rfs_A Internalin B, repeat mo 99.9 4.3E-25 1.5E-29 197.4 15.4 212 103-326 36-248 (272)
74 2xwt_C Thyrotropin receptor; s 99.9 1.7E-24 5.7E-29 189.7 18.1 196 134-334 32-236 (239)
75 2ast_B S-phase kinase-associat 99.9 1.4E-27 4.9E-32 219.8 -2.3 265 56-343 34-312 (336)
76 2xwt_C Thyrotropin receptor; s 99.9 2.3E-24 7.8E-29 188.9 15.3 206 145-359 23-238 (239)
77 3m19_A Variable lymphocyte rec 99.9 5.2E-24 1.8E-28 188.0 17.0 192 56-268 3-194 (251)
78 4glp_A Monocyte differentiatio 99.9 1.2E-24 4.2E-29 198.1 12.5 199 157-359 91-306 (310)
79 4glp_A Monocyte differentiatio 99.9 2E-24 6.7E-29 196.8 13.7 226 106-338 62-308 (310)
80 2ca6_A RAN GTPase-activating p 99.9 1.1E-26 3.8E-31 218.1 -2.0 242 99-341 23-320 (386)
81 1z7x_W Ribonuclease inhibitor; 99.9 2E-27 6.7E-32 228.2 -9.5 274 72-359 86-410 (461)
82 3goz_A Leucine-rich repeat-con 99.9 6.8E-26 2.3E-30 210.9 0.8 245 94-339 8-299 (362)
83 3m19_A Variable lymphocyte rec 99.9 5.5E-23 1.9E-27 181.4 19.0 179 134-315 15-194 (251)
84 1h6u_A Internalin H; cell adhe 99.9 4.3E-23 1.5E-27 187.7 16.8 194 105-314 38-231 (308)
85 4ay9_X Follicle-stimulating ho 99.9 1.6E-22 5.4E-27 187.3 18.6 228 124-356 23-255 (350)
86 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-22 1.2E-26 197.4 22.2 226 71-342 61-302 (622)
87 3goz_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 205.0 0.9 249 112-361 2-298 (362)
88 2ca6_A RAN GTPase-activating p 99.9 4.7E-25 1.6E-29 207.1 -1.4 250 71-333 32-339 (386)
89 1z7x_W Ribonuclease inhibitor; 99.9 8.1E-26 2.8E-30 217.0 -6.9 273 71-359 113-439 (461)
90 1h6u_A Internalin H; cell adhe 99.9 2.1E-22 7.1E-27 183.2 15.8 193 130-338 38-231 (308)
91 2ast_B S-phase kinase-associat 99.9 5.3E-24 1.8E-28 195.9 1.7 241 109-359 48-305 (336)
92 2o6s_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 166.8 16.3 162 133-300 28-189 (208)
93 3cvr_A Invasion plasmid antige 99.9 2.2E-21 7.7E-26 189.5 18.5 188 108-323 59-253 (571)
94 2o6s_A Variable lymphocyte rec 99.9 1.9E-21 6.5E-26 166.5 15.1 174 136-342 10-183 (208)
95 4ay9_X Follicle-stimulating ho 99.9 2.3E-20 8E-25 172.7 20.8 220 108-334 30-256 (350)
96 3cvr_A Invasion plasmid antige 99.9 6.8E-21 2.3E-25 186.1 17.9 195 61-299 50-253 (571)
97 3e6j_A Variable lymphocyte rec 99.9 2E-20 6.9E-25 162.6 17.1 134 133-267 40-173 (229)
98 4b8c_D Glucose-repressible alc 99.8 1.5E-22 5.3E-27 204.2 2.5 203 26-249 129-336 (727)
99 2v9t_B SLIT homolog 2 protein 99.8 8.5E-20 2.9E-24 157.7 15.5 152 184-338 14-166 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-20 9.6E-25 160.7 11.1 152 160-314 14-167 (220)
101 2xot_A Amphoterin-induced prot 99.8 4.7E-20 1.6E-24 171.4 12.6 178 160-364 21-206 (361)
102 1h6t_A Internalin B; cell adhe 99.8 1.3E-19 4.4E-24 163.4 14.0 172 130-315 43-215 (291)
103 1h6t_A Internalin B; cell adhe 99.8 8.7E-20 3E-24 164.4 12.8 172 104-290 42-214 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 3.8E-19 1.3E-23 153.5 16.4 134 133-266 32-165 (220)
105 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.7E-24 168.2 13.5 176 136-314 21-203 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-19 1.5E-23 153.1 15.7 136 134-269 33-169 (220)
107 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.6E-23 151.1 16.1 153 159-315 21-174 (229)
108 1m9s_A Internalin B; cell inva 99.8 4.8E-19 1.6E-23 174.7 14.5 173 104-290 39-211 (605)
109 1m9s_A Internalin B; cell inva 99.8 2.8E-19 9.5E-24 176.4 12.7 176 129-318 39-215 (605)
110 4ezg_A Putative uncharacterize 99.8 2.2E-18 7.6E-23 146.1 13.8 130 131-266 42-172 (197)
111 4ezg_A Putative uncharacterize 99.8 2.3E-18 7.7E-23 146.1 13.6 153 154-337 41-194 (197)
112 1dce_A Protein (RAB geranylger 99.8 9.6E-22 3.3E-26 192.7 -12.1 119 230-353 442-566 (567)
113 3ogk_B Coronatine-insensitive 99.8 1.3E-20 4.5E-25 186.3 -4.1 133 226-358 375-524 (592)
114 1w8a_A SLIT protein; signaling 99.8 1.9E-18 6.5E-23 145.9 9.0 179 184-369 11-192 (192)
115 1xeu_A Internalin C; cellular 99.8 2.2E-18 7.6E-23 152.9 9.6 167 107-289 18-185 (263)
116 3ogk_B Coronatine-insensitive 99.8 2.8E-20 9.5E-25 184.0 -3.0 108 251-358 376-499 (592)
117 1dce_A Protein (RAB geranylger 99.7 1E-21 3.4E-26 192.6 -13.5 190 130-331 346-567 (567)
118 1xeu_A Internalin C; cellular 99.7 1.6E-18 5.4E-23 153.9 8.0 170 155-339 17-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 5.7E-18 2E-22 143.0 10.3 130 136-268 11-141 (192)
120 2ell_A Acidic leucine-rich nuc 99.7 3.9E-17 1.3E-21 134.7 11.4 132 133-266 24-160 (168)
121 4b8c_D Glucose-repressible alc 99.7 2.6E-18 8.9E-23 173.3 3.9 220 108-340 173-407 (727)
122 2ell_A Acidic leucine-rich nuc 99.7 9.8E-17 3.3E-21 132.3 11.3 134 106-242 22-160 (168)
123 2je0_A Acidic leucine-rich nuc 99.7 4.4E-17 1.5E-21 131.6 7.3 127 133-261 17-148 (149)
124 2p1m_B Transport inhibitor res 99.7 2.6E-19 9E-24 177.0 -7.1 131 228-359 371-518 (594)
125 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8.3E-22 151.0 6.4 183 156-342 100-314 (329)
126 2wfh_A SLIT homolog 2 protein 99.7 4.7E-16 1.6E-20 131.3 13.2 126 208-337 13-139 (193)
127 2wfh_A SLIT homolog 2 protein 99.7 6.7E-16 2.3E-20 130.3 14.0 108 158-266 32-139 (193)
128 2o6r_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 126.9 13.9 110 158-267 29-138 (177)
129 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.7E-21 129.3 7.3 129 107-238 16-149 (149)
130 2o6r_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 126.8 13.6 113 229-341 28-141 (177)
131 2p1m_B Transport inhibitor res 99.7 9.7E-19 3.3E-23 172.9 -6.8 170 94-263 115-324 (594)
132 4fdw_A Leucine rich hypothetic 99.6 2.9E-13 1E-17 127.0 22.1 235 94-342 122-362 (401)
133 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-15 9E-20 124.7 6.6 129 132-265 18-152 (176)
134 4fdw_A Leucine rich hypothetic 99.6 3E-13 1E-17 126.9 21.2 232 95-337 145-383 (401)
135 3sb4_A Hypothetical leucine ri 99.5 2.4E-14 8.2E-19 131.0 12.2 221 107-331 48-328 (329)
136 1ds9_A Outer arm dynein; leuci 99.5 2E-17 6.9E-22 140.3 -8.0 153 106-266 16-185 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.5 9.5E-15 3.3E-19 121.3 8.1 131 202-337 16-153 (176)
138 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 114.0 11.8 108 231-341 11-119 (170)
139 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.9E-21 135.0 -6.2 135 131-270 16-157 (198)
140 3g39_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 112.1 12.5 104 136-242 12-115 (170)
141 2r9u_A Variable lymphocyte rec 99.5 3E-13 1E-17 111.9 12.0 104 232-338 15-119 (174)
142 2r9u_A Variable lymphocyte rec 99.5 4.6E-13 1.6E-17 110.9 12.1 85 157-241 33-117 (174)
143 3un9_A NLR family member X1; l 99.3 1.1E-14 3.9E-19 135.3 -7.6 134 133-266 72-224 (372)
144 3un9_A NLR family member X1; l 99.3 2.9E-14 9.9E-19 132.5 -5.4 182 156-337 71-283 (372)
145 2ifg_A High affinity nerve gro 99.3 7.1E-12 2.4E-16 115.3 9.5 104 232-338 11-117 (347)
146 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.2E-16 112.2 9.6 104 112-218 12-116 (347)
147 4fs7_A Uncharacterized protein 99.1 4.4E-09 1.5E-13 98.4 20.1 249 96-356 82-375 (394)
148 2ra8_A Uncharacterized protein 99.0 6.5E-11 2.2E-15 109.2 2.6 83 251-335 250-341 (362)
149 4fs7_A Uncharacterized protein 99.0 1.2E-08 4E-13 95.5 17.9 219 103-334 157-376 (394)
150 2ra8_A Uncharacterized protein 99.0 1.6E-10 5.4E-15 106.6 2.8 135 201-338 168-321 (362)
151 4gt6_A Cell surface protein; l 99.0 6E-08 2.1E-12 90.6 20.2 107 225-335 261-368 (394)
152 4gt6_A Cell surface protein; l 98.8 3.9E-07 1.3E-11 85.1 19.6 132 198-336 258-390 (394)
153 4h09_A Hypothetical leucine ri 98.7 2.2E-06 7.5E-11 79.4 21.0 67 95-166 56-122 (379)
154 1io0_A Tropomodulin; LRR prote 98.7 2.1E-09 7E-14 89.6 0.1 114 224-337 31-164 (185)
155 3rw6_A Nuclear RNA export fact 98.6 4.5E-10 1.5E-14 98.6 -5.5 80 154-235 167-257 (267)
156 4h09_A Hypothetical leucine ri 98.6 1.5E-05 5.3E-10 73.6 22.7 223 103-334 41-320 (379)
157 1io0_A Tropomodulin; LRR prote 98.5 9E-09 3.1E-13 85.7 -1.1 17 154-170 62-78 (185)
158 3rw6_A Nuclear RNA export fact 98.4 1.6E-08 5.4E-13 88.7 -2.0 23 57-80 77-99 (267)
159 3e4g_A ATP synthase subunit S, 98.1 8.5E-07 2.9E-11 72.3 2.0 83 133-215 61-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 69.0 3.5 83 157-239 61-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 7.1E-06 2.4E-10 68.1 1.5 112 226-337 38-170 (197)
162 3rfe_A Platelet glycoprotein I 97.6 8.8E-05 3E-09 57.5 5.3 36 301-336 32-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 3.8E-05 1.3E-09 63.8 0.1 18 295-312 152-169 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.002 7E-08 49.6 6.5 57 256-313 11-68 (130)
165 2lz0_A Uncharacterized protein 58.3 37 0.0013 24.0 6.8 13 152-164 15-27 (100)
166 2lz0_A Uncharacterized protein 57.4 28 0.00097 24.6 6.0 39 101-141 13-51 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-48 Score=357.38 Aligned_cols=304 Identities=34% Similarity=0.659 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCC-CCcceEeCCCC--CcEEEEEcCCCCCChhhhhccCCCccee--
Q 037720 25 CCPPSDRAALLAFKSALHEPYIGIFNSWT-GNDCCH-NWYGVSCDPET--HQVAEITLRGKSEDPIFQRAHRTGYMTG-- 98 (369)
Q Consensus 25 ~~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~-~w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~~-- 98 (369)
.|.++|++||++||+++.++ . .+++|. +.+||. .|.||+|+... ++|+.|++++ +.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~-~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-------------~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP-T-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------LNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC-G-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-------------CCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCc-c-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-------------CCccCCc
Confidence 58999999999999999754 3 688997 667873 39999998654 7999999998 66777
Q ss_pred ecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcccc
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG 178 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (369)
.+|..+.++++|++|++++++.+.+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 77777777777777777643566666676677777777777777777666666666677777777777766666666666
Q ss_pred CCCCCcEEEeecccccCCCCcccCCCC-CCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcE
Q 037720 179 NLSSLMHLDVRNNRISGPIPGCFGRLH-MLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLST 257 (369)
Q Consensus 179 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 257 (369)
.+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~- 224 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ- 224 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS-
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC-
Confidence 666666666666666655666665555 566666666665555555555554 55555555555555555555555554
Q ss_pred EeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 258 LNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 258 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++
T Consensus 225 ----------------------~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 225 ----------------------KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ----------------------EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ----------------------EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 455555555444443 567789999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCcccccCCCCccCCCCCCCC
Q 037720 338 GKIPAGSPFDHLDASSFESNKCLCGKPLLNAC 369 (369)
Q Consensus 338 g~ip~~~~~~~l~~l~~~~n~~~c~~~~~~~c 369 (369)
|.+|....+++|+.+++.+|+++|+.++. .|
T Consensus 282 ~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 282 GEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp EECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999988999999999999999998875 46
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-43 Score=361.58 Aligned_cols=326 Identities=25% Similarity=0.346 Sum_probs=193.2
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCcceEeCCCCCcEEEEEcCCCCCChh----h---hhc---
Q 037720 22 VVNCCPPSDRAALLAFKSALHEPYIGIFNSWT-GNDCCHNWYGVSCDPETHQVAEITLRGKSEDPI----F---QRA--- 90 (369)
Q Consensus 22 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~c~~~~~~v~~L~L~~~~~~~~----~---~~~--- 90 (369)
+++...++|++||++||+++.++ . .+++|+ +.+||. |.||+|+ .++|++|+|++....+. . ..+
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~-~-~l~~W~~~~~~C~-w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDK-N-LLPDWSSNKNPCT-FDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCT-T-SSTTCCTTSCGGG-STTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCCCc-c-cccCCCCCCCCcC-CcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 33445788999999999999854 4 789997 778896 9999998 57999999998543321 0 000
Q ss_pred c-CCCcceee--cCccccCCCCCCEEecCCCCCCcccCCc--CCCCCCCCcEEEccCCcCCccCCccc-cCCCCCCEEEe
Q 037720 91 H-RTGYMTGF--ISPAVCKLPHLSSLTLTDWEGISGEIPR--CSTLLPFLRILDLTGNKISGEIPRHI-GKLHRLSVLNI 164 (369)
Q Consensus 91 ~-~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L 164 (369)
. ..+...+. +|..+.++++|++|+|++ +.+.|.+|. .++++++|++|++++|.+++..|..+ .++++|++|++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSR-NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCS-SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCC-CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 0 01112222 235666667777777764 566666666 66666777777777776666555544 56666666666
Q ss_pred ecccCCCCCCcc---ccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCC
Q 037720 165 ADNYVSGPIPGS---IGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQI 241 (369)
Q Consensus 165 ~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l 241 (369)
++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. +.++++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 666666554443 45555555555555555543332 4555666666666666555554 56666666666666666
Q ss_pred ccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCC-CCCCEEEccCCCCCCCCcccC
Q 037720 242 SGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPK-SYFMVLDLSYNKLSGPIPRTL 320 (369)
Q Consensus 242 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l 320 (369)
++.+|..+..+++|++|++++|.+.+..|.. ..++|++|++++|.+++.+|..+... ++|++|++++|++++.+|..+
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 6555666666666666666666655544443 22555555555555555555554443 555555555555555555555
Q ss_pred cCCCCcCEEEcccCcCceeCCCC--CCCCCCCcccccCC
Q 037720 321 SGTSYIGYLDLSHNNLCGKIPAG--SPFDHLDASSFESN 357 (369)
Q Consensus 321 ~~l~~L~~L~ls~N~l~g~ip~~--~~~~~l~~l~~~~n 357 (369)
..+++|++|++++|+++|.+|.. ..+++|+.+++++|
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 55555555555555555555531 33444444444444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.9e-43 Score=348.74 Aligned_cols=311 Identities=24% Similarity=0.371 Sum_probs=233.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCC-------CCC-CCCCCCCC---cceEeCCCCCcEEEEEcCCCCCChhhhhccCCCc
Q 037720 27 PPSDRAALLAFKSALHEPYIGIFN-------SWT-GNDCCHNW---YGVSCDPETHQVAEITLRGKSEDPIFQRAHRTGY 95 (369)
Q Consensus 27 ~~~~~~~ll~~~~~~~~~~~~~~~-------~W~-~~~~c~~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 95 (369)
..+|++||.++++++.++.|.... +|. +.++|. | .||+|+.. +||++|+|++ +.
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~-w~~~~GV~C~~~-~~V~~L~L~~-------------~~ 92 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDM-WGAQPGVSLNSN-GRVTGLSLEG-------------FG 92 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGG-TTCCTTEEECTT-CCEEEEECTT-------------SC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCccc-ccCCCCeEEcCC-CCEEEEEecC-------------cc
Confidence 357999999999999877665433 898 778886 9 99999865 8999999999 88
Q ss_pred ceeecCccccCCCCCCEEecCCCC--------------------------------------------------------
Q 037720 96 MTGFISPAVCKLPHLSSLTLTDWE-------------------------------------------------------- 119 (369)
Q Consensus 96 ~~~~~~~~l~~l~~L~~L~L~~~~-------------------------------------------------------- 119 (369)
+.|.+|+.++++++|++|+|++++
T Consensus 93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 889999999999999999998641
Q ss_pred ---------------------CCcccCCcCCCCCCCCcEEEccCCcCCcc-----------------CCcccc--CCCCC
Q 037720 120 ---------------------GISGEIPRCSTLLPFLRILDLTGNKISGE-----------------IPRHIG--KLHRL 159 (369)
Q Consensus 120 ---------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L 159 (369)
.+++ +|..++++++|++|++++|.+++. +|..++ ++++|
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred cccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 2334 778888889999999999998875 888888 89999
Q ss_pred CEEEeecccCCCCCCccccCCCCCcEEEeeccc-ccC-CCCcccCCC------CCCcEEEccCCcccccCCc--cccCCC
Q 037720 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNR-ISG-PIPGCFGRL------HMLSRALLSGNQISGTIPS--SISRVY 229 (369)
Q Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~ 229 (369)
++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|. .+.+++
T Consensus 252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~ 330 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK 330 (636)
T ss_dssp CEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred CEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence 999999998888888888888999999999888 877 677776665 78888888888888 7777 788888
Q ss_pred CCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CC-CCEEEccCCcCCccCCcCcCCCC--CCCEE
Q 037720 230 RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SG-VNNLNLSKNSLEGKIPDAFGPKS--YFMVL 305 (369)
Q Consensus 230 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L 305 (369)
+|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+.. ++ |++|++++|.++ .+|..+..++ +|+.|
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 88888888888887777 6777777777777777776 45554444 55 777777777666 5565555443 56666
Q ss_pred EccCCCCCCCCcccCc-------CCCCcCEEEcccCcCceeCCCC--CCCCCCCcccccCCC
Q 037720 306 DLSYNKLSGPIPRTLS-------GTSYIGYLDLSHNNLCGKIPAG--SPFDHLDASSFESNK 358 (369)
Q Consensus 306 ~Ls~n~l~~~~~~~l~-------~l~~L~~L~ls~N~l~g~ip~~--~~~~~l~~l~~~~n~ 358 (369)
++++|++++.+|..+. .+++|++|++++|+++ .+|.. ..+++|+.+++++|.
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence 6666666666665555 5555666666666655 44442 224455555555554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-41 Score=344.75 Aligned_cols=274 Identities=37% Similarity=0.562 Sum_probs=257.1
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
|.+.+.+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|++++.+
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CccccccCHHHhcCCCCCEEECcC-CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 888999999999999999999995 7888899999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccc-----
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPAS----- 248 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~----- 248 (369)
|..+.++++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|..
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766643
Q ss_pred -----------------------------------------------------------------cCCCCCCcEEeccCC
Q 037720 249 -----------------------------------------------------------------LGKMPDLSTLNLDFN 263 (369)
Q Consensus 249 -----------------------------------------------------------------l~~l~~L~~L~L~~n 263 (369)
++.+++|+.|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 334578999999999
Q ss_pred cccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 264 RFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 264 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
.++|.+|..+.. +.|++|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.||.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999998887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCccCCCCCCCC
Q 037720 343 GSPFDHLDASSFESNKCLCGKPLLNAC 369 (369)
Q Consensus 343 ~~~~~~l~~l~~~~n~~~c~~~~~~~c 369 (369)
+..|..+...++.|||.+||.++. .|
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C 748 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLP-RC 748 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSC-CC
T ss_pred chhhccCCHHHhcCCchhcCCCCc-CC
Confidence 999999999999999999999875 66
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-40 Score=337.78 Aligned_cols=273 Identities=24% Similarity=0.340 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCCC------------cceEeCCCCCcEEEEEcCCCCCChhhhhc
Q 037720 25 CCPPSDRAALLAFKSALHEPYIGIFNSWTGNDC--CHNW------------YGVSCDPETHQVAEITLRGKSEDPIFQRA 90 (369)
Q Consensus 25 ~~~~~~~~~ll~~~~~~~~~~~~~~~~W~~~~~--c~~w------------~gv~c~~~~~~v~~L~L~~~~~~~~~~~~ 90 (369)
.+..+|++||++||+++.++.|.....|...++ |. | .||+|+. .+||++|+|++
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~-W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---------- 332 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---------- 332 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCS-CCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----------
T ss_pred ccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccc-cccccccccccCcCceEecC-CCCEEEEECcc----------
Confidence 345689999999999997642222222222345 75 9 9999986 58999999999
Q ss_pred cCCCcceeecCccccCCCCCCEEecCCCCCCccc----------------------------------------------
Q 037720 91 HRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGE---------------------------------------------- 124 (369)
Q Consensus 91 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~---------------------------------------------- 124 (369)
+.+.|.+|+.++++++|++|+|+++|.+.|.
T Consensus 333 ---~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 333 ---FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp ---TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred ---CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 8899999999999999999999324533332
Q ss_pred ------------------------------CCcCCCCCCCCcEEEccCCcCCc-----------------cCCcccc--C
Q 037720 125 ------------------------------IPRCSTLLPFLRILDLTGNKISG-----------------EIPRHIG--K 155 (369)
Q Consensus 125 ------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~ 155 (369)
+|..++++++|++|+|++|.+++ .+|..++ +
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 77788889999999999999987 3888877 8
Q ss_pred CCCCCEEEeecccCCCCCCccccCCCCCcEEEeeccc-ccC-CCCcccCCC-------CCCcEEEccCCcccccCCc--c
Q 037720 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNR-ISG-PIPGCFGRL-------HMLSRALLSGNQISGTIPS--S 224 (369)
Q Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~--~ 224 (369)
+++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 9999999999999888899889999999999999997 777 667655444 48888888888888 7777 7
Q ss_pred ccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CC-CCEEEccCCcCCccCCcCcCCCCC-
Q 037720 225 ISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SG-VNNLNLSKNSLEGKIPDAFGPKSY- 301 (369)
Q Consensus 225 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~-L~~L~L~~n~l~~~~~~~l~~l~~- 301 (369)
+.++++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+.. ++ |++|++++|.++ .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 888888888888888887 666 7778888888888888877 56655555 56 888888887777 56666555433
Q ss_pred -CCEEEccCCCCCCCCc
Q 037720 302 -FMVLDLSYNKLSGPIP 317 (369)
Q Consensus 302 -L~~L~Ls~n~l~~~~~ 317 (369)
|+.|++++|++++.+|
T Consensus 645 ~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CEEEEECCSSCTTTTSS
T ss_pred CCCEEECcCCcCCCccc
Confidence 6666666666655443
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-36 Score=292.50 Aligned_cols=295 Identities=21% Similarity=0.229 Sum_probs=216.1
Q ss_pred CCCCCCcc--eEeCCCC--------CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccC
Q 037720 56 DCCHNWYG--VSCDPET--------HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEI 125 (369)
Q Consensus 56 ~~c~~w~g--v~c~~~~--------~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~ 125 (369)
..|. |.+ |.|.... .+++.|++++ +.+.+..|..+.++++|++|++++ +.+.+.+
T Consensus 6 ~~c~-~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i 70 (455)
T 3v47_A 6 SECS-VIGYNAICINRGLHQVPELPAHVNYVDLSL-------------NSIAELNETSFSRLQDLQFLKVEQ-QTPGLVI 70 (455)
T ss_dssp -CCE-EETTEEECCSSCCSSCCCCCTTCCEEECCS-------------SCCCEECTTTTSSCTTCCEEECCC-CSTTCEE
T ss_pred ceeE-EEccccCcCCCCcccCCCCCCccCEEEecC-------------CccCcCChhHhccCccccEEECcC-CcccceE
Confidence 3453 554 7775432 4688999998 666666666677777777777764 4444343
Q ss_pred -CcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcc--ccCCCCCcEEEeecccccCCCCcc-c
Q 037720 126 -PRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGS--IGNLSSLMHLDVRNNRISGPIPGC-F 201 (369)
Q Consensus 126 -~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-l 201 (369)
+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +
T Consensus 71 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (455)
T 3v47_A 71 RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150 (455)
T ss_dssp CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG
T ss_pred CcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc
Confidence 445666777777777777776666666666777777777777666533333 666666666666666666555544 5
Q ss_pred CCCCCCcEEEccCCcccccCCccccCC-----------------------------------------------------
Q 037720 202 GRLHMLSRALLSGNQISGTIPSSISRV----------------------------------------------------- 228 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~~~~~~l~~l----------------------------------------------------- 228 (369)
..+++|++|++++|.+++..+..+..+
T Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 666666666666666654444332211
Q ss_pred --------------------------------------------CCCCEEEcccCCCccccccccCCCCCCcEEeccCCc
Q 037720 229 --------------------------------------------YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNR 264 (369)
Q Consensus 229 --------------------------------------------~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 264 (369)
++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 356666666666666667788899999999999999
Q ss_pred ccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC
Q 037720 265 FSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343 (369)
Q Consensus 265 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~ 343 (369)
+++..|..+.. ++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus 311 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 99888877766 89999999999999888889999999999999999999888999999999999999999999644433
Q ss_pred -CCCCCCCcccccCCCCccCCCC
Q 037720 344 -SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 344 -~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
..+++|+.+++++|++.|+++.
T Consensus 391 ~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTT
T ss_pred hccCCcccEEEccCCCcccCCCc
Confidence 5678999999999999999873
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.5e-36 Score=279.05 Aligned_cols=277 Identities=17% Similarity=0.201 Sum_probs=198.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCC----C-CCCCCCCCcceEeCCCCCcEEEEEcCCCCCChhhhhccCCCcceee
Q 037720 25 CCPPSDRAALLAFKSALHEPYIGIFNSW----T-GNDCCHNWYGVSCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGF 99 (369)
Q Consensus 25 ~~~~~~~~~ll~~~~~~~~~~~~~~~~W----~-~~~~c~~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~ 99 (369)
.+..+|++||++||.++..++.++...| . ..++|. |.|+.|+.....
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~-~~g~~~~~~~~~--------------------------- 74 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET-RTGRALKATADL--------------------------- 74 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC-SHHHHHHHHHHH---------------------------
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc-cCCcchhhhHHH---------------------------
Confidence 3557899999999999866666677889 3 567786 999999521000
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccC
Q 037720 100 ISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGN 179 (369)
Q Consensus 100 ~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (369)
+ .-...+++++|++++ +.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+.+
T Consensus 75 l--~~~~~~~l~~L~L~~-n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 75 L--EDATQPGRVALELRS-VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp H--HHHTSTTCCEEEEES-SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred H--hcccccceeEEEccC-CCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc
Confidence 0 001123344444443 3343 45555555666666666666665 55555666666666666666665 55555666
Q ss_pred CCCCcEEEeecccccCCCCcccC---------CCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccC
Q 037720 180 LSSLMHLDVRNNRISGPIPGCFG---------RLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLG 250 (369)
Q Consensus 180 l~~L~~L~Ls~n~l~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 250 (369)
+++|++|++++|.+.+.+|..+. .+++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|..+.
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~ 226 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc
Confidence 66666666666555555555444 3788888888888887 777778888888888888888874 555678
Q ss_pred CCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEE
Q 037720 251 KMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYL 329 (369)
Q Consensus 251 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 329 (369)
.+++|++|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 8888888888888888888777666 888888898888888888889999999999999999999999999999999999
Q ss_pred EcccCcCc
Q 037720 330 DLSHNNLC 337 (369)
Q Consensus 330 ~ls~N~l~ 337 (369)
++..+.+.
T Consensus 307 ~l~~~~~~ 314 (328)
T 4fcg_A 307 LVPPHLQA 314 (328)
T ss_dssp ECCGGGSC
T ss_pred eCCHHHHH
Confidence 99887665
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=281.51 Aligned_cols=291 Identities=20% Similarity=0.202 Sum_probs=224.3
Q ss_pred CcceEeCCC---------CCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCC
Q 037720 61 WYGVSCDPE---------THQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTL 131 (369)
Q Consensus 61 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 131 (369)
|..|.|... ..+++.|+|++ +.+.+..+..+.++++|++|+|++ +.+.+..|..|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~-------------n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~ 78 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGK-------------NRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNN 78 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCS-------------SCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCC-------------CccceECHhHccCCCCCCEEECCC-CccCEeChhhhhC
Confidence 667777532 23677888888 778887788888888888888885 6777777788888
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
+++|++|++++|.++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 88888888888888866556678888888888888888877777788888888888888888777777788888888888
Q ss_pred ccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC------------------------Ccccc
Q 037720 212 LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF------------------------NRFSG 267 (369)
Q Consensus 212 l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~------------------------n~l~~ 267 (369)
+++|.+++..+..+.++++|+.|++++|.+.+..+..+..+++|++|++++ |.+++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 888887765556677777777777777777665555565555555555554 55543
Q ss_pred cCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CC
Q 037720 268 VIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SP 345 (369)
Q Consensus 268 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~ 345 (369)
..+..+.. ++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..+.. ..
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 22223333 78888888888888777778888999999999999999888889999999999999999998544332 45
Q ss_pred CCCCCcccccCCCCccCCCC
Q 037720 346 FDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 346 ~~~l~~l~~~~n~~~c~~~~ 365 (369)
+++|+.+++++||+.|+|.+
T Consensus 319 l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 319 VGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp GGGCCEEECCSSCEECSGGG
T ss_pred CcccCEEEccCCCccCccch
Confidence 78899999999999998753
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-34 Score=269.71 Aligned_cols=263 Identities=22% Similarity=0.225 Sum_probs=196.3
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
+.+....+..+..+++|++|++++ +.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++...
T Consensus 55 ~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 133 (390)
T 3o6n_A 55 STMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133 (390)
T ss_dssp CEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CchhhCChhHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC
Confidence 444444444567788888888885 6676666667888888888888888888777777888888888888888887443
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccC--------------------------
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISR-------------------------- 227 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-------------------------- 227 (369)
+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++.....+.+
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECC
Confidence 344677888888888888887777777888888888888888776432222211
Q ss_pred -----------CCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcC
Q 037720 228 -----------VYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDA 295 (369)
Q Consensus 228 -----------l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~ 295 (369)
.++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+.. ++|++|++++|++++ +|..
T Consensus 214 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 290 (390)
T 3o6n_A 214 HNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 290 (390)
T ss_dssp SSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECS
T ss_pred CCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcc
Confidence 12455566666666532 45677888888888888888777777665 889999999988884 5666
Q ss_pred cCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCccCC
Q 037720 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGK 363 (369)
Q Consensus 296 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~ 363 (369)
+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| ...+++|+.+++++|++-|++
T Consensus 291 ~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHH
T ss_pred cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccchh
Confidence 678888999999999888 566677888899999999999874 44 456788999999999988763
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-34 Score=281.71 Aligned_cols=263 Identities=22% Similarity=0.224 Sum_probs=203.8
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
+.+....+..+..+++|++|++++ +.+.+..+..|+.+++|++|++++|.+++..|..|+++++|++|+|++|.+++..
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 455555555577888888888885 6777777778888888888888888888777777888888888888888888555
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCC-------------------------
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRV------------------------- 228 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------------------------- 228 (369)
+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.....+.++
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 5556888888888888888887777788888888888888888775432222211
Q ss_pred ------------CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcC
Q 037720 229 ------------YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDA 295 (369)
Q Consensus 229 ------------~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~ 295 (369)
++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|..+.. ++|++|++++|.+++ +|..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECS
T ss_pred CCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcc
Confidence 235555566666654 256778889999999999998887777766 889999999999885 5666
Q ss_pred cCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCccCC
Q 037720 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGK 363 (369)
Q Consensus 296 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~ 363 (369)
+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+++. | ...++.|+.+++++|++-|.+
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 778889999999999988 5777788889999999999999853 4 356789999999999988753
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.5e-35 Score=267.04 Aligned_cols=215 Identities=28% Similarity=0.470 Sum_probs=180.9
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
+.+.+.+|..+.++++|++|++++ +.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC
Confidence 778999999999999999999995 8899999999999999999999999999999999999999999999999999899
Q ss_pred CccccCCC-CCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCC
Q 037720 174 PGSIGNLS-SLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKM 252 (369)
Q Consensus 174 ~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l 252 (369)
|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.++. +..+
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 99999998 999999999999999999999987 99999999999999999999999999999999999866554 5555
Q ss_pred CCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcc
Q 037720 253 PDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLS 332 (369)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 332 (369)
++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|.. ..+++|++++++
T Consensus 244 ~~L~~L~Ls~N~l~~-----------------------~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYG-----------------------TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp TTCCEEECCSSCCEE-----------------------CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred CCCCEEECcCCcccC-----------------------cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 666665555555554 44455555556666666666666555554 556666666666
Q ss_pred cCc
Q 037720 333 HNN 335 (369)
Q Consensus 333 ~N~ 335 (369)
+|+
T Consensus 300 ~N~ 302 (313)
T 1ogq_A 300 NNK 302 (313)
T ss_dssp SSS
T ss_pred CCC
Confidence 664
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-33 Score=280.90 Aligned_cols=265 Identities=22% Similarity=0.208 Sum_probs=204.5
Q ss_pred ecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCc-cccCCCCCCEEEeecccCCCCC--Cc
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPR-HIGKLHRLSVLNIADNYVSGPI--PG 175 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~ 175 (369)
.+|..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+.+.+|. .+.++++|++|++++|.+++.. +.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp CCCSSCCSCTTCCEEECTT-CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred CCChhhcccccCCEEECcc-CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 4555566666666666664 455555555566666666666666666654443 3667777777777777776543 55
Q ss_pred cccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCc-cccCCCCCCEEEcccCCCccccccccCCCCC
Q 037720 176 SIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS-SISRVYRLTDLDLSTNQISGPIPASLGKMPD 254 (369)
Q Consensus 176 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 254 (369)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 677777888888888877777777788888888888888888766554 4788888888999888888777888888999
Q ss_pred CcEEeccCCcccccC---CcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEE
Q 037720 255 LSTLNLDFNRFSGVI---PASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLD 330 (369)
Q Consensus 255 L~~L~L~~n~l~~~~---~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 330 (369)
|++|++++|.+++.. +..+.. ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++| +|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 999999999887632 223333 889999999999998888999999999999999999999999999999999 999
Q ss_pred cccCcCceeCCCC-CCCCCCCcccccCCCCccCCCC
Q 037720 331 LSHNNLCGKIPAG-SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 331 ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
+++|++++.+|.. ..+++|+.+++++||+.|+|+.
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999766653 4568899999999999999863
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.5e-32 Score=268.31 Aligned_cols=141 Identities=20% Similarity=0.160 Sum_probs=111.6
Q ss_pred cccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccccc-CCcccCc-CCCCEEEccCCcCCccCCcCcCCCCC
Q 037720 224 SISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV-IPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSY 301 (369)
Q Consensus 224 ~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~ 301 (369)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .|..+.. ++|++|++++|++++..|..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 444555666666666666666666677777788888888877763 5555555 88999999999988888888899999
Q ss_pred CCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCC-CCCcccccCCCCccCCCC
Q 037720 302 FMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFD-HLDASSFESNKCLCGKPL 365 (369)
Q Consensus 302 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~l~~l~~~~n~~~c~~~~ 365 (369)
|++|++++|++++..|..+..+++|++|++++|+++ .+|.. ..++ +|+.+++++||+.|+|+.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999888999999999999999999998 66664 3444 589999999999999875
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-32 Score=260.96 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=125.4
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEc
Q 037720 205 HMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNL 283 (369)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L 283 (369)
++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.. ++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 35666677777777677888999999999999999999888889999999999999999999887777766 99999999
Q ss_pred cCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC
Q 037720 284 SKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343 (369)
Q Consensus 284 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~ 343 (369)
++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999888999999999999999999999877778899999999999999999998853
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-32 Score=267.92 Aligned_cols=272 Identities=22% Similarity=0.210 Sum_probs=243.2
Q ss_pred cEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCc
Q 037720 72 QVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPR 151 (369)
Q Consensus 72 ~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (369)
.++.+++++ +.+.+..+..+..+++|++|++++ +.++ .+|..+..+++|++|++++|.+++..|.
T Consensus 255 ~L~~L~l~~-------------n~l~~~~~~~~~~l~~L~~L~l~~-n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 255 SVESINLQK-------------HYFFNISSNTFHCFSGLQELDLTA-THLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp EEEEEECTT-------------CCCSSCCTTTTTTCTTCSEEECTT-SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ceeEEEeec-------------CccCccCHHHhccccCCCEEeccC-CccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence 678888888 888888888899999999999996 6666 7888999999999999999999988888
Q ss_pred cccCCCCCCEEEeecccCCCCCCc-cccCCCCCcEEEeecccccCCC--CcccCCCCCCcEEEccCCcccccCCccccCC
Q 037720 152 HIGKLHRLSVLNIADNYVSGPIPG-SIGNLSSLMHLDVRNNRISGPI--PGCFGRLHMLSRALLSGNQISGTIPSSISRV 228 (369)
Q Consensus 152 ~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 228 (369)
.+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 999999999999999999877765 4899999999999999998765 7789999999999999999998889999999
Q ss_pred CCCCEEEcccCCCcccccc-ccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCcc---CCcCcCCCCCCC
Q 037720 229 YRLTDLDLSTNQISGPIPA-SLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGK---IPDAFGPKSYFM 303 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~---~~~~l~~l~~L~ 303 (369)
++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+.. ++|++|++++|.+++. .+..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 9999999999999876654 4899999999999999999888877766 9999999999999872 336689999999
Q ss_pred EEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCCCC
Q 037720 304 VLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKC 359 (369)
Q Consensus 304 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~ 359 (369)
+|++++|++++..|..+..+++|++|++++|++++..|.. ..++.+ .+++++|..
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 9999999999999999999999999999999999887763 556777 888888864
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-31 Score=263.61 Aligned_cols=160 Identities=22% Similarity=0.281 Sum_probs=122.0
Q ss_pred CCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcc--ccccccCCCCCCcEEeccCCcccccCCcc-cCc-CC
Q 037720 202 GRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISG--PIPASLGKMPDLSTLNLDFNRFSGVIPAS-LLT-SG 277 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~-~~ 277 (369)
..+++|++|++++|.+++..|..+.++++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +.. ++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 455677777777777776667777777777777777777765 33456777777777777777777645543 333 77
Q ss_pred CCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC--CCCCCCCccccc
Q 037720 278 VNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG--SPFDHLDASSFE 355 (369)
Q Consensus 278 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~l~~l~~~ 355 (369)
|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+++|+.++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 88888888887776665554 68999999999998 67777779999999999999999 67763 567889999999
Q ss_pred CCCCccCCCC
Q 037720 356 SNKCLCGKPL 365 (369)
Q Consensus 356 ~n~~~c~~~~ 365 (369)
+||+.|+|+.
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9999998753
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-31 Score=266.42 Aligned_cols=281 Identities=24% Similarity=0.251 Sum_probs=210.2
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
..++.|||++ |.+++..+..|.++++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..+
T Consensus 52 ~~~~~LdLs~-------------N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred cCCCEEEeeC-------------CCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3688999998 788877777888888888888885 67776666778888888888888888886666
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccC-CCCcccCCCCCCcEEEccCCcccccCCccc----
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG-PIPGCFGRLHMLSRALLSGNQISGTIPSSI---- 225 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---- 225 (369)
..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 678888888888888888886666678888888888888888764 356667777777777777765432111000
Q ss_pred --------------------------------------------------------------------------------
Q 037720 226 -------------------------------------------------------------------------------- 225 (369)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (369)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037720 226 -------------------------------------------------------------------------------- 225 (369)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (369)
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence
Q ss_pred ----------cCCCCCCEEEcccCCCc-----------------------------------------------------
Q 037720 226 ----------SRVYRLTDLDLSTNQIS----------------------------------------------------- 242 (369)
Q Consensus 226 ----------~~l~~L~~L~ls~n~l~----------------------------------------------------- 242 (369)
..+++|+.++++.|.+.
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 01223344444433321
Q ss_pred ---------------------cccccccCCCCCCcEEeccCCcccc-cCCcccCc-CCCCEEEccCCcCCccCCcCcCCC
Q 037720 243 ---------------------GPIPASLGKMPDLSTLNLDFNRFSG-VIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPK 299 (369)
Q Consensus 243 ---------------------~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l 299 (369)
+..+..+..+++|+.|++++|.+.+ ..|..+.. ++|++|++++|++++..|..|.++
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 1112223345567777777776433 34555554 899999999999999999999999
Q ss_pred CCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCC-CCCCcccccCCCCccCCCC
Q 037720 300 SYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPF-DHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 300 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~l~~l~~~~n~~~c~~~~ 365 (369)
++|++|+|++|+|++..+..+..+++|++||+++|++++..|.. ..+ .+|+.+++++||+.|+|.+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999999999887764 333 6899999999999999874
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=261.69 Aligned_cols=264 Identities=20% Similarity=0.247 Sum_probs=203.4
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCc-cCCccccCCCCCCEEEeecccCCC-
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISG-EIPRHIGKLHRLSVLNIADNYVSG- 171 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~- 171 (369)
|.+.+..|..+.++++|++|++++ |.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++
T Consensus 55 n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 130 (520)
T 2z7x_B 55 NRIQYLDISVFKFNQELEYLDLSH-NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130 (520)
T ss_dssp SCCCEEEGGGGTTCTTCCEEECCS-SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG
T ss_pred CccCCcChHHhhcccCCCEEecCC-Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh
Confidence 778888888888888888888885 6666 56654 78888888888888886 467788888888888888876642
Q ss_pred ------------------------CCCccccCCC----------------------------------------------
Q 037720 172 ------------------------PIPGSIGNLS---------------------------------------------- 181 (369)
Q Consensus 172 ------------------------~~~~~~~~l~---------------------------------------------- 181 (369)
..|..+..+.
T Consensus 131 ~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 2233333311
Q ss_pred -------------------------------------CCcEEEeecccccCCCCccc-----------------------
Q 037720 182 -------------------------------------SLMHLDVRNNRISGPIPGCF----------------------- 201 (369)
Q Consensus 182 -------------------------------------~L~~L~Ls~n~l~~~~~~~l----------------------- 201 (369)
+|++|++++|.+++.+|..+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~ 290 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCS
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceec
Confidence 56666666666665555544
Q ss_pred ------------------------------CCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcc--cccccc
Q 037720 202 ------------------------------GRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISG--PIPASL 249 (369)
Q Consensus 202 ------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l 249 (369)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred chhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence 566778888888888887778888888888888888888875 455678
Q ss_pred CCCCCCcEEeccCCcccccCCcc-cCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcC
Q 037720 250 GKMPDLSTLNLDFNRFSGVIPAS-LLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIG 327 (369)
Q Consensus 250 ~~l~~L~~L~L~~n~l~~~~~~~-~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 327 (369)
..+++|++|++++|.+++.+|.. +.. ++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 88888888888888888755544 333 7888888888888877776654 78999999999998 7888888999999
Q ss_pred EEEcccCcCceeCCCC--CCCCCCCcccccCCCCccCCCC
Q 037720 328 YLDLSHNNLCGKIPAG--SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 328 ~L~ls~N~l~g~ip~~--~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
+|++++|+++ .+|.. ..+++|+.+++++|++.|+|++
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999 67764 5578899999999999998753
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=262.31 Aligned_cols=280 Identities=21% Similarity=0.199 Sum_probs=205.6
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|+|++ |.+.+..|..+.++++|++|+|++ +.+....+..|.++++|++|++++|.+++..+
T Consensus 56 ~~L~~L~L~~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 56 PHLEELELNE-------------NIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCEEECCC-------------CccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 4678888888 667777777777777777777774 55554444456677777777777777776666
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCC--
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRV-- 228 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-- 228 (369)
..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 667777777777777777766556666666777777777776665444455556666666666655554444444444
Q ss_pred ----------------------CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccC
Q 037720 229 ----------------------YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSK 285 (369)
Q Consensus 229 ----------------------~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 285 (369)
.+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 35666666667776554467889999999999999999877766666 8999999999
Q ss_pred CcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCccCCC
Q 037720 286 NSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGKP 364 (369)
Q Consensus 286 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~~ 364 (369)
|++++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|.+....+..+.+.......+.++...|..|
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999998999999999999999999999888888899999999999999998655443333444556667777777644
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=6.7e-32 Score=269.43 Aligned_cols=283 Identities=19% Similarity=0.225 Sum_probs=229.1
Q ss_pred CcEEEEEcCCCC-CCh--h---h---------hhcc----CCCcceeecCc--cccCCCCCCEEecCCCCCCcccCCcCC
Q 037720 71 HQVAEITLRGKS-EDP--I---F---------QRAH----RTGYMTGFISP--AVCKLPHLSSLTLTDWEGISGEIPRCS 129 (369)
Q Consensus 71 ~~v~~L~L~~~~-~~~--~---~---------~~~~----~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~~~ 129 (369)
.+++.|++++.. ..+ + + ..+. ..|.+. .+|. .+.++++|++|++++ +.+.|.+| .+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~-N~l~g~ip-~~ 349 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY-NQLEGKLP-AF 349 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS-CCCEEECC-CC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC-CcCccchh-hh
Confidence 378889998864 432 1 1 1111 345666 6777 788888888888885 77888888 78
Q ss_pred CCCCCCcEEEccCCcCCccCCccccCCCC-CCEEEeecccCCCCCCccccCCC--CCcEEEeecccccCCCCcccC----
Q 037720 130 TLLPFLRILDLTGNKISGEIPRHIGKLHR-LSVLNIADNYVSGPIPGSIGNLS--SLMHLDVRNNRISGPIPGCFG---- 202 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~---- 202 (369)
+.+++|++|++++|.++ .+|..+.++++ |++|++++|.++ .+|..+..+. +|++|++++|.+++..|..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 88888888888888888 77888888888 999999999988 7787777654 899999999999888888887
Q ss_pred ---CCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccc-cCC-------CCCCcEEeccCCcccccCCc
Q 037720 203 ---RLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPAS-LGK-------MPDLSTLNLDFNRFSGVIPA 271 (369)
Q Consensus 203 ---~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~-l~~-------l~~L~~L~L~~n~l~~~~~~ 271 (369)
.+++|++|++++|.++...+..+..+++|++|++++|.++ .+|.. +.. +++|++|++++|.++ .+|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 7789999999999998433344567899999999999998 45543 322 238999999999999 5666
Q ss_pred ccC--c-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEc------cCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 272 SLL--T-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDL------SYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 272 ~~~--~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
.+. . ++|++|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 665 3 899999999999997 8889999999999999 56788899999999999999999999999 68998
Q ss_pred CCCCCCCCcccccCCCCccCC
Q 037720 343 GSPFDHLDASSFESNKCLCGK 363 (369)
Q Consensus 343 ~~~~~~l~~l~~~~n~~~c~~ 363 (369)
. .+++|+.+++++|+..|-.
T Consensus 584 ~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 K-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp C-CCTTCCEEECCSCTTCEEE
T ss_pred h-HhCcCCEEECcCCCCcccc
Confidence 6 4489999999999987743
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=5.5e-31 Score=242.53 Aligned_cols=276 Identities=22% Similarity=0.289 Sum_probs=169.5
Q ss_pred CcceEeCCC---------CCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCC
Q 037720 61 WYGVSCDPE---------THQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTL 131 (369)
Q Consensus 61 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 131 (369)
|..+.|... ..+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..+..
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQN-------------NDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSP 100 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCS-------------SCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTT
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCC-------------CcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhC
Confidence 777777532 12455566665 566666666667777777777764 5566555666666
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeeccccc--CCCCcccCCCCCCcE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRIS--GPIPGCFGRLHMLSR 209 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~ 209 (369)
+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ +..+..+..+ +|++
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 777777777777666 4444443 56777777777766544445666777777777777664 2455556655 6777
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcC
Q 037720 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSL 288 (369)
Q Consensus 210 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 288 (369)
|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++
T Consensus 177 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 177 LRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred EECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 7777776663 444433 56677777777776665566667777777777777776655544444 6677777777776
Q ss_pred CccCCcCcCCCCCCCEEEccCCCCCCCCcccCcC------CCCcCEEEcccCcCce-eCCCC--CCCCCCCcccccCCC
Q 037720 289 EGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSG------TSYIGYLDLSHNNLCG-KIPAG--SPFDHLDASSFESNK 358 (369)
Q Consensus 289 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~ls~N~l~g-~ip~~--~~~~~l~~l~~~~n~ 358 (369)
+ .+|..+..+++|+.|++++|++++..+..+.. .++|+.|++++|.+.. .+++. ..++.++.+++++|+
T Consensus 254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6 56666666777777777777776555555543 2456677777776651 22221 335556666666654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=6.6e-32 Score=265.14 Aligned_cols=164 Identities=23% Similarity=0.228 Sum_probs=133.2
Q ss_pred CCCCCcceEeCCC-----------CCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccC
Q 037720 57 CCHNWYGVSCDPE-----------THQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEI 125 (369)
Q Consensus 57 ~c~~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~ 125 (369)
.|. |.|| |+.. ..+++.|++++ +.+.+..|..+.++++|++|++++ +.+.+..
T Consensus 3 ~C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~ 66 (549)
T 2z81_A 3 SCD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF-------------NKITYIGHGDLRACANLQVLILKS-SRINTIE 66 (549)
T ss_dssp EEC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCS-------------SCCCEECSSTTSSCTTCCEEECTT-SCCCEEC
T ss_pred cCC-CCce-EECCCCccccccccCCCCccEEECcC-------------CccCccChhhhhcCCcccEEECCC-CCcCccC
Confidence 364 8888 7632 13688888888 888888888999999999999996 7888888
Q ss_pred CcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCC-CCCccccCCCCCcEEEeecccccCCCC-cccCC
Q 037720 126 PRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSG-PIPGSIGNLSSLMHLDVRNNRISGPIP-GCFGR 203 (369)
Q Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~ 203 (369)
|..++.+++|++|++++|.+++..+..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.++ ..+..
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 8889999999999999999997777779999999999999999986 356788999999999999998544444 67889
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEc
Q 037720 204 LHMLSRALLSGNQISGTIPSSISRVYRLTDLDL 236 (369)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 236 (369)
+++|++|++++|.+++..|..+..+++|++|++
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999999999999998877777655443333333
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1e-30 Score=240.55 Aligned_cols=221 Identities=26% Similarity=0.326 Sum_probs=102.6
Q ss_pred CCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEe
Q 037720 109 HLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDV 188 (369)
Q Consensus 109 ~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (369)
++++|++++ +.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 444455543 3444333334444555555555555554444444455555555555555444 3333222 34555555
Q ss_pred ecccccCCCCcccCCCCCCcEEEccCCcccc--cCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccc
Q 037720 189 RNNRISGPIPGCFGRLHMLSRALLSGNQISG--TIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 189 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 5555444444444445555555555544431 333444444555555555554442 222221 44555555555544
Q ss_pred ccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 267 GVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 267 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+..+..+.. ++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 444433333 44555555555554444444444455555555555544 34444444455555555555544
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=3.4e-31 Score=266.66 Aligned_cols=271 Identities=22% Similarity=0.231 Sum_probs=223.1
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCccc-CC-cCCCC--CCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGE-IP-RCSTL--LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYV 169 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~-~~-~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 169 (369)
+.+.+..+..+..+++|++|++++ +.+.+. ++ ..+.. .+.|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTT-CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCChhHhccccCCcEEECCC-CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 566666666677777777777775 332221 11 12222 25678888888888888888899999999999999999
Q ss_pred CCCCC-ccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccc--ccCCccccCCCCCCEEEcccCCCccccc
Q 037720 170 SGPIP-GSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSISRVYRLTDLDLSTNQISGPIP 246 (369)
Q Consensus 170 ~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~ls~n~l~~~~~ 246 (369)
.+.+| ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|.+++..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 87665 67889999999999999998888888999999999999999886 5678899999999999999999998878
Q ss_pred cccCCCCCCcEEeccCCcccccCCc--------ccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCc
Q 037720 247 ASLGKMPDLSTLNLDFNRFSGVIPA--------SLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIP 317 (369)
Q Consensus 247 ~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 317 (369)
..+..+++|++|++++|.+++..+. .+.. ++|++|++++|+++...+..|.++++|+.|++++|++++..+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 8899999999999999999865322 1333 899999999999995555679999999999999999998777
Q ss_pred ccCcCCCCcCEEEcccCcCceeCCCC-C-CCCCCCcccccCCCCccCCCC
Q 037720 318 RTLSGTSYIGYLDLSHNNLCGKIPAG-S-PFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 318 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~-~~~~l~~l~~~~n~~~c~~~~ 365 (369)
..+..+++|++|++++|++++..|.. . .+++++.+++++||+.|+|..
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 78899999999999999999765542 2 578999999999999999974
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=6e-32 Score=251.06 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=108.0
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
+.+.+..+..+.++++|++|++++ +.+.+..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+++...
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 62 NRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred CcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccC
Confidence 444444333444555555555543 3444444444444555555555555554322223444555555555555444221
Q ss_pred C-ccccCCCCCcEEEeecc-cccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCC
Q 037720 174 P-GSIGNLSSLMHLDVRNN-RISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGK 251 (369)
Q Consensus 174 ~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 251 (369)
+ ..+.++++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++......+..
T Consensus 141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 220 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220 (353)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH
T ss_pred chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh
Confidence 1 23444455555555544 233333344444455555555555544444444444555555555555443222222233
Q ss_pred CCCCcEEeccCCcccccCCcccCc----CCCCEEEccCCcCCc----cCCcCcCCCCCCCEEEccCCCCCCCCccc-CcC
Q 037720 252 MPDLSTLNLDFNRFSGVIPASLLT----SGVNNLNLSKNSLEG----KIPDAFGPKSYFMVLDLSYNKLSGPIPRT-LSG 322 (369)
Q Consensus 252 l~~L~~L~L~~n~l~~~~~~~~~~----~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~ 322 (369)
+++|++|++++|.+++..+..+.. ..++.++++++.+++ .+|..+..+++|+.|++++|++++ +|.. +..
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~ 299 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDR 299 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhc
Confidence 444555555555444333222211 334444444444443 233344444445555555555442 2222 344
Q ss_pred CCCcCEEEcccCcCceeC
Q 037720 323 TSYIGYLDLSHNNLCGKI 340 (369)
Q Consensus 323 l~~L~~L~ls~N~l~g~i 340 (369)
+++|++|++++|++++..
T Consensus 300 l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CTTCCEEECCSSCBCCCH
T ss_pred CCCCCEEEeeCCCccCcC
Confidence 445555555555444433
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=5.4e-31 Score=271.08 Aligned_cols=283 Identities=24% Similarity=0.235 Sum_probs=202.4
Q ss_pred CcceEeCCCCCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccC-CcCCCCCCCCcEEE
Q 037720 61 WYGVSCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEI-PRCSTLLPFLRILD 139 (369)
Q Consensus 61 w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~l~~L~~L~ 139 (369)
|..|.+ ...+++.|+|++ |.+.+..+..+.++++|++|++++ +...+.+ |..|.++++|++|+
T Consensus 16 L~~vP~--lp~~l~~LdLs~-------------N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSF-------------NYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp SSCCCS--SCTTCCEEEEES-------------CCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEE
T ss_pred CCCCCC--CCCCcCEEECCC-------------CcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEE
Confidence 677766 346889999998 778888888888888888888886 4344444 67788888888888
Q ss_pred ccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcc--ccCCCCCcEEEeecccccCCCC-cccCCCCCCcEEEccCCc
Q 037720 140 LTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGS--IGNLSSLMHLDVRNNRISGPIP-GCFGRLHMLSRALLSGNQ 216 (369)
Q Consensus 140 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~ 216 (369)
+++|.+++..|..|.++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 8888888777888888888888888888888655554 7888888888888888876544 467888888888888888
Q ss_pred ccccCCccccCC--CC------------------------------CCEEEcccCCCccccccccC--------------
Q 037720 217 ISGTIPSSISRV--YR------------------------------LTDLDLSTNQISGPIPASLG-------------- 250 (369)
Q Consensus 217 l~~~~~~~l~~l--~~------------------------------L~~L~ls~n~l~~~~~~~l~-------------- 250 (369)
+++..+..+..+ ++ |+.|++++|.+++..+..+.
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 776655555433 33 55555555544432222111
Q ss_pred ----------------------C--CCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEE
Q 037720 251 ----------------------K--MPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVL 305 (369)
Q Consensus 251 ----------------------~--l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 305 (369)
. .++|+.|++++|.+.+..+..+.. ++|++|++++|++++..+..|..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 1 145666677666666655555554 677777777777777777777777777777
Q ss_pred EccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC-CCCCCCCCcccccCCCC
Q 037720 306 DLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA-GSPFDHLDASSFESNKC 359 (369)
Q Consensus 306 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~l~~l~~~~n~~ 359 (369)
++++|++++..+..+..+++|++|++++|++++..|. ...+++|+.+++++|..
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 7777777777777777777777888877777644433 24466777777777754
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=255.75 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=90.4
Q ss_pred cCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCC-ccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCc
Q 037720 249 LGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLE-GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYI 326 (369)
Q Consensus 249 l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 326 (369)
+..+++|++|++++|.+.+..|..+.. ++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 444555555555555555555544444 77788888888776 4677888888889999999999988888889999999
Q ss_pred CEEEcccCcCceeCCCC-CCCCCCCcccccCCCCccCCCC
Q 037720 327 GYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 327 ~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
++|++++|++++..|.. ..+++|+.+++++|++.|+++.
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999766653 5678899999999999999875
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.9e-30 Score=257.74 Aligned_cols=124 Identities=27% Similarity=0.290 Sum_probs=79.2
Q ss_pred CcEEEEEcCCCCCCh----hhhh------cc-CCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEE
Q 037720 71 HQVAEITLRGKSEDP----IFQR------AH-RTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILD 139 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~----~~~~------~~-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~ 139 (369)
.+++.|++++..... .+.. +. ..|.+.+..|..+.++++|++|++++ +.+.+..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC-CcccccChhhcCCcccCCEEE
Confidence 467888888743221 1111 11 23556666666667777777777764 556655666677777777777
Q ss_pred ccCCcCCccCCccccCCCCCCEEEeecccCCC-CCCccccCCCCCcEEEeecccccC
Q 037720 140 LTGNKISGEIPRHIGKLHRLSVLNIADNYVSG-PIPGSIGNLSSLMHLDVRNNRISG 195 (369)
Q Consensus 140 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 195 (369)
+++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 77777765555667777777777777777764 456677777777777777776554
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=247.56 Aligned_cols=231 Identities=23% Similarity=0.268 Sum_probs=128.0
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEcc
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLS 213 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~ 213 (369)
++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44455555555544444445555555555555555544333445555555555555555544434445555555555555
Q ss_pred CCcccccCCccccCCCCCCEEEcccCC-CccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccC
Q 037720 214 GNQISGTIPSSISRVYRLTDLDLSTNQ-ISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKI 292 (369)
Q Consensus 214 ~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 292 (369)
+|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.++ .+|.....++|++|++++|.+++..
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccC
Confidence 555554444445555555555555532 22222234555556666666666555 2332222256666666666666666
Q ss_pred CcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCCCCccCCCC
Q 037720 293 PDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 293 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
|..|..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+.. ..+++|+.+++++||+.|+|.+
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 666677777777777777777666666777777777777777776433332 3456666777777777777653
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.2e-30 Score=248.42 Aligned_cols=231 Identities=24% Similarity=0.263 Sum_probs=122.3
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEcc
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLS 213 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~ 213 (369)
++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 44444444444444444444444444444444444444434444444445555555544444334444445555555555
Q ss_pred CCcccccCCccccCCCCCCEEEcccC-CCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccC
Q 037720 214 GNQISGTIPSSISRVYRLTDLDLSTN-QISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKI 292 (369)
Q Consensus 214 ~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 292 (369)
+|.++...+..+.++++|++|++++| .+....+..+..+++|++|++++|.+++. |.....++|++|++++|.+++..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccC
Confidence 55544333344455555555555542 22222223455555555555555555532 22222256666666666666665
Q ss_pred CcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCCCCccCCCC
Q 037720 293 PDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 293 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
|..|.++++|+.|++++|++++..+..+..+++|++|++++|++++..+.. ..+++|+.+++++||+.|+|.+
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 666666666666666666666666666666666666666666666333322 3455666666677776666653
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.5e-30 Score=236.19 Aligned_cols=278 Identities=24% Similarity=0.300 Sum_probs=234.3
Q ss_pred CCcceEeCCC---------CCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCC
Q 037720 60 NWYGVSCDPE---------THQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCST 130 (369)
Q Consensus 60 ~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 130 (369)
.|..+.|... ...++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..+.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQN-------------NKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCS-------------SCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTT
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCC-------------CcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhc
Confidence 3888888642 23567788888 888888888999999999999995 788878899999
Q ss_pred CCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccC--CCCcccCCCCCCc
Q 037720 131 LLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG--PIPGCFGRLHMLS 208 (369)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~ 208 (369)
.+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 9999999999999998 5666554 799999999999997666779999999999999999863 6778899999999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCc
Q 037720 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNS 287 (369)
Q Consensus 209 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 287 (369)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|+
T Consensus 175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 9999999998 4565554 79999999999999888889999999999999999999877766665 899999999999
Q ss_pred CCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcC------CCCcCEEEcccCcCce-eCCCC--CCCCCCCcccccCCC
Q 037720 288 LEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSG------TSYIGYLDLSHNNLCG-KIPAG--SPFDHLDASSFESNK 358 (369)
Q Consensus 288 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~ls~N~l~g-~ip~~--~~~~~l~~l~~~~n~ 358 (369)
++ .+|..+..+++|++|++++|++++..+..+.. .+.++.|++++|.+.. .+++. .....++.+++++|+
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred Cc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99 78888999999999999999999877777643 3789999999999864 34432 345678888888874
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.8e-31 Score=256.80 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+..|..+.++++|++|++++ +.+++..|..++++++|++|++++|.++ .+|
T Consensus 21 ~~L~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 21 QKTTILNISQ-------------NYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp TTCSEEECCS-------------SCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred ccccEEECCC-------------CcccccChhhccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence 5788999998 888888888999999999999996 7888888899999999999999999999 566
Q ss_pred ccccCCCCCCEEEeecccCCC-CCCccccCCCCCcEEEeecccccC
Q 037720 151 RHIGKLHRLSVLNIADNYVSG-PIPGSIGNLSSLMHLDVRNNRISG 195 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 195 (369)
.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 55 89999999999999997 478899999999999999988753
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-30 Score=239.00 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=175.4
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
.+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888888 67777878888888888888888 77878888888888888888887 6777888888888888
Q ss_pred ccCCcccccCCccccC---------CCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEE
Q 037720 212 LSGNQISGTIPSSISR---------VYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNL 281 (369)
Q Consensus 212 l~~n~l~~~~~~~l~~---------l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L 281 (369)
+++|++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+++. |..+.. ++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEE
Confidence 8888777777776654 888888888888887 6777788888888888888888853 444444 788888
Q ss_pred EccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCC
Q 037720 282 NLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESN 357 (369)
Q Consensus 282 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n 357 (369)
++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.|.+|.. ..++++..+++..|
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888888888888888888888888888888888888888888888888888888874 44555666655443
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-30 Score=237.42 Aligned_cols=232 Identities=19% Similarity=0.200 Sum_probs=193.9
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEeecccCCCCCCccccCCCCCcE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGE--IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMH 185 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (369)
++|++|++++ +.+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 5789999985 666643344578899999999999988733 3666778899999999999888 56777888999999
Q ss_pred EEeecccccCCCC-cccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcc-ccccccCCCCCCcEEeccCC
Q 037720 186 LDVRNNRISGPIP-GCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISG-PIPASLGKMPDLSTLNLDFN 263 (369)
Q Consensus 186 L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~n 263 (369)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999886554 578889999999999999888888888889999999999999876 57788889999999999999
Q ss_pred cccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCC-CcCEEEcccCcCceeCC
Q 037720 264 RFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTS-YIGYLDLSHNNLCGKIP 341 (369)
Q Consensus 264 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l~g~ip 341 (369)
.+++..|..+.. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|++|++++|.+++..+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 998877776665 8899999999999877777788889999999999999988888888885 89999999999886543
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.7e-30 Score=236.93 Aligned_cols=265 Identities=25% Similarity=0.294 Sum_probs=225.7
Q ss_pred cEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCc
Q 037720 72 QVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPR 151 (369)
Q Consensus 72 ~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (369)
+++.+++++ +.+. .+|..+ .++|++|++++ +.+.+..+..+.++++|++|++++|.+++..|.
T Consensus 34 ~l~~l~~~~-------------~~l~-~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 96 (332)
T 2ft3_A 34 HLRVVQCSD-------------LGLK-AVPKEI--SPDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96 (332)
T ss_dssp ETTEEECCS-------------SCCS-SCCSCC--CTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred cCCEEECCC-------------CCcc-ccCCCC--CCCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHh
Confidence 456688887 4444 455544 37899999996 778877788899999999999999999988899
Q ss_pred cccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccc--ccCCccccCCC
Q 037720 152 HIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS--GTIPSSISRVY 229 (369)
Q Consensus 152 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~ 229 (369)
.+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 9999999999999999999 6666555 89999999999999777778999999999999999996 3667788887
Q ss_pred CCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEcc
Q 037720 230 RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLS 308 (369)
Q Consensus 230 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 308 (369)
+|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++|+.|+++
T Consensus 173 ~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 173 KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 99999999999985 555443 79999999999999887777766 899999999999998888889999999999999
Q ss_pred CCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-------CCCCCCCcccccCCCCcc
Q 037720 309 YNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-------SPFDHLDASSFESNKCLC 361 (369)
Q Consensus 309 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-------~~~~~l~~l~~~~n~~~c 361 (369)
+|+++ .+|..+..+++|++|++++|++++..+.. ..+..+..+++.+||+.+
T Consensus 250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 99999 78888999999999999999998543331 114567889999999763
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.1e-30 Score=259.67 Aligned_cols=249 Identities=23% Similarity=0.302 Sum_probs=175.2
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..|..++++++|++|++++|.+++..+
T Consensus 25 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTH-------------NQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp TTCSEEECCS-------------SCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEECCC-------------CCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 4788999988 777777777788888888888885 66777777777778888888888888875555
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCcccc--CC
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSIS--RV 228 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l 228 (369)
..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 5688888888888888888766666788888888888888888777777778888888888888887766555443 45
Q ss_pred CCCCEEEcccCCCccccccccCCC---------------------------CCCcEEeccCCcccccCCcccCc---CCC
Q 037720 229 YRLTDLDLSTNQISGPIPASLGKM---------------------------PDLSTLNLDFNRFSGVIPASLLT---SGV 278 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~---~~L 278 (369)
++|++|++++|.+++..|..+..+ ++|+.|++++|.+.+..|..+.. ++|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 777888888777776555544332 45566666666666655555543 347
Q ss_pred CEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEccc
Q 037720 279 NNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSH 333 (369)
Q Consensus 279 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 333 (369)
++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 7777777777666666666677777777777766655554444444444444433
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.4e-30 Score=235.45 Aligned_cols=239 Identities=21% Similarity=0.209 Sum_probs=208.8
Q ss_pred cCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCC--CCccccCCCCCcEEEeecccccCCCCccc
Q 037720 124 EIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGP--IPGSIGNLSSLMHLDVRNNRISGPIPGCF 201 (369)
Q Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 201 (369)
.+|..+ .++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .++..+
T Consensus 21 ~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~ 97 (306)
T 2z66_A 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97 (306)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE
T ss_pred cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc
Confidence 455543 36899999999999955555689999999999999999832 3566778999999999999998 467778
Q ss_pred CCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccc-cCCcccCc-CCC
Q 037720 202 GRLHMLSRALLSGNQISGTIP-SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSG-VIPASLLT-SGV 278 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~-~~L 278 (369)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+.. ++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 999999999999999986554 578999999999999999998888889999999999999999987 46666665 899
Q ss_pred CEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCC-CCCCcccccC
Q 037720 279 NNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPF-DHLDASSFES 356 (369)
Q Consensus 279 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~l~~l~~~~ 356 (369)
++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.. ..+ ++|+.+++++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 99999999999888999999999999999999999888888999999999999999999888764 444 5899999999
Q ss_pred CCCccCCCC
Q 037720 357 NKCLCGKPL 365 (369)
Q Consensus 357 n~~~c~~~~ 365 (369)
|++.|+|..
T Consensus 258 N~~~~~c~~ 266 (306)
T 2z66_A 258 NDFACTCEH 266 (306)
T ss_dssp CCEECSGGG
T ss_pred CCeecccCh
Confidence 999998753
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=261.69 Aligned_cols=271 Identities=24% Similarity=0.224 Sum_probs=201.9
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeec-CccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFI-SPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEI 149 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (369)
.+++.|++++ +...+.+ |..+.++++|++|+|++ +.+.+..|..|+++++|++|++++|.+++.+
T Consensus 48 ~~L~~LdLs~-------------n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 48 EQLQLLELGS-------------QYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CSCSEEEECT-------------TCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred ccCeEEeCCC-------------CCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 3567777777 4444444 55666777777777764 5566666666677777777777777666544
Q ss_pred Ccc--ccCCCCCCEEEeecccCCCCCC-ccccCCCCCcEEEeecccccCCCCcc--------------------------
Q 037720 150 PRH--IGKLHRLSVLNIADNYVSGPIP-GSIGNLSSLMHLDVRNNRISGPIPGC-------------------------- 200 (369)
Q Consensus 150 ~~~--l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------------------- 200 (369)
|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence 443 6667777777777776665433 35666667777777666665444333
Q ss_pred cCCCCC------CcEEEccCCcccccCCccccC--------------------------------------CCCCCEEEc
Q 037720 201 FGRLHM------LSRALLSGNQISGTIPSSISR--------------------------------------VYRLTDLDL 236 (369)
Q Consensus 201 l~~l~~------L~~L~l~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~l 236 (369)
+..+.+ |++|++++|.+++..+..+.. .++|+.|++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence 333333 788888888666544433321 268999999
Q ss_pred ccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCC
Q 037720 237 STNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGP 315 (369)
Q Consensus 237 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 315 (369)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+.. ++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 274 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp TTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred CCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 999999888899999999999999999999888877766 8999999999999988899999999999999999999988
Q ss_pred CcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCC
Q 037720 316 IPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 316 ~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
.+..+..+++|++|++++|.+++ ++. +++++.+++++|+.
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGNKL 393 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSCC-CSS---CCSCSEEEEESCCC
T ss_pred ChhhhcCCCCCCEEECCCCCCCc-ccC---CCCcchhccCCCCc
Confidence 88899999999999999999984 443 56677777776654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=9.4e-30 Score=239.42 Aligned_cols=265 Identities=19% Similarity=0.169 Sum_probs=216.1
Q ss_pred CCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCC
Q 037720 92 RTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSG 171 (369)
Q Consensus 92 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 171 (369)
..+.+.+..+..+..+++|++|++++ +.+.+..|..++.+++|++|++++|.++...+..|.++++|++|++++|.+++
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 34777777778999999999999996 77887778889999999999999999995555557899999999999999997
Q ss_pred CCCccccCCCCCcEEEeecccccCCCCcccCCC-------------------------------------CCCcEEEccC
Q 037720 172 PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRL-------------------------------------HMLSRALLSG 214 (369)
Q Consensus 172 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~ 214 (369)
..+..+.++++|++|++++|.+++.....+.++ ++|++|++++
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence 777889999999999999999875432222221 2466666666
Q ss_pred CcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCC
Q 037720 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIP 293 (369)
Q Consensus 215 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~ 293 (369)
|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. +..... ++|++|++++|+++ .+|
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~ 311 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVE 311 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecC
Confidence 666543 5688899999999999999988899999999999999999999865 333333 89999999999998 567
Q ss_pred cCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCccCCCC
Q 037720 294 DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGKPL 365 (369)
Q Consensus 294 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~~~ 365 (369)
..+..+++|+.|++++|++++. + +..+++|++|++++|++++.-.. ..+..+....+..++..|.++.
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTTC
T ss_pred ccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecccc
Confidence 7788899999999999999854 3 67889999999999999864221 3455666777888888887643
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.4e-30 Score=251.54 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC-CCCCCCCCcccccCCCCccCCC
Q 037720 298 PKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA-GSPFDHLDASSFESNKCLCGKP 364 (369)
Q Consensus 298 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~l~~l~~~~n~~~c~~~ 364 (369)
.+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|. ...+++|+.+++++|++.|+++
T Consensus 449 ~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 5667777777777777 4554 35678888888888888876665 3567889999999999999875
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3e-30 Score=232.43 Aligned_cols=234 Identities=21% Similarity=0.181 Sum_probs=170.2
Q ss_pred CCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeeccc-CCCCCCccccCCCCCcE
Q 037720 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY-VSGPIPGSIGNLSSLMH 185 (369)
Q Consensus 107 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 185 (369)
.++|++|++++ +.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++|. +....+..+..+++|++
T Consensus 31 ~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 46788888885 66776666677888888888888888887767778888888888888886 66555677778888888
Q ss_pred EEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcc
Q 037720 186 LDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRF 265 (369)
Q Consensus 186 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 265 (369)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 88888888777777777888888888888888766566677788888888888887765555677778888888888877
Q ss_pred cccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 266 SGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 266 ~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
++..|..+.. ++|++|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.+..+.+.+.+..|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 7766666655 77777777777777655566777777777777777776433211 0112234445666777777776
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2e-29 Score=257.02 Aligned_cols=257 Identities=19% Similarity=0.224 Sum_probs=200.4
Q ss_pred CCcceeecCc--cccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCC-CCEEEeecccC
Q 037720 93 TGYMTGFISP--AVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHR-LSVLNIADNYV 169 (369)
Q Consensus 93 ~~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l 169 (369)
.|.+. .+|. .+.++++|++|++++ |.+. .+| .++.+++|++|++++|.++ .+|..+.++++ |++|++++|.+
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~-N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVH-NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTT-SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCC-CCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 35555 6666 777777788888774 5565 666 6777777888888887777 67777777777 88888888877
Q ss_pred CCCCCccccCCCC--CcEEEeecccccCCCCccc---C--CCCCCcEEEccCCcccccCCccc-cCCCCCCEEEcccCCC
Q 037720 170 SGPIPGSIGNLSS--LMHLDVRNNRISGPIPGCF---G--RLHMLSRALLSGNQISGTIPSSI-SRVYRLTDLDLSTNQI 241 (369)
Q Consensus 170 ~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~l---~--~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l 241 (369)
+ .+|..+..+.. |++|++++|.+.+.+|... . .+++|++|++++|.++ .+|..+ ..+++|+.|++++|.+
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 7 66766665543 7888888887776554322 2 3347888888888888 556544 5789999999999999
Q ss_pred ccccccccCC--------CCCCcEEeccCCcccccCCcccC--c-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccC-
Q 037720 242 SGPIPASLGK--------MPDLSTLNLDFNRFSGVIPASLL--T-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSY- 309 (369)
Q Consensus 242 ~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~- 309 (369)
+ .+|..+.. +++|++|++++|.++ .+|..+. . ++|+.|++++|++++ +|..+..+++|+.|+|++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 8 55544332 338999999999999 6677665 3 899999999999997 788899999999999976
Q ss_pred -----CCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCcc
Q 037720 310 -----NKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLC 361 (369)
Q Consensus 310 -----n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c 361 (369)
|++.+.+|..+..+++|++|++++|++ +.+|.. .+++|+.+++++|+...
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 788889999999999999999999999 799986 44799999999998743
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=241.49 Aligned_cols=254 Identities=21% Similarity=0.223 Sum_probs=218.3
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
++|++|++++ +.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 5899999996 778876666899999999999999999988888999999999999999999955445589999999999
Q ss_pred eecccccCCCC-cccCCCCCCcEEEccCCc-ccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcc
Q 037720 188 VRNNRISGPIP-GCFGRLHMLSRALLSGNQ-ISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRF 265 (369)
Q Consensus 188 Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 265 (369)
+++|.+++..+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999985444 478999999999999994 6666678899999999999999999988899999999999999999998
Q ss_pred cccCCcccC--cCCCCEEEccCCcCCccCCcCc---CCCCCCCEEEccCCCCCC----CCcccCcCCCCcCEEEcccCcC
Q 037720 266 SGVIPASLL--TSGVNNLNLSKNSLEGKIPDAF---GPKSYFMVLDLSYNKLSG----PIPRTLSGTSYIGYLDLSHNNL 336 (369)
Q Consensus 266 ~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~N~l 336 (369)
.. ++..+. .++|++|++++|.+++..+..+ .....++.++++++.+++ .+|..+..+++|++|++++|++
T Consensus 211 ~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 211 IL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp TT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 64 333332 2899999999999997655443 346778999999999986 4778889999999999999999
Q ss_pred ceeCCCC--CCCCCCCcccccCCCCccCCC
Q 037720 337 CGKIPAG--SPFDHLDASSFESNKCLCGKP 364 (369)
Q Consensus 337 ~g~ip~~--~~~~~l~~l~~~~n~~~c~~~ 364 (369)
+ .+|.. ..+++|+.+++++|++.|+++
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9 77774 468899999999999999875
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=251.92 Aligned_cols=264 Identities=19% Similarity=0.165 Sum_probs=218.5
Q ss_pred CCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCC
Q 037720 92 RTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSG 171 (369)
Q Consensus 92 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 171 (369)
..+.+.+..+..+..+++|++|+|++ +.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 35778888888999999999999995 77888888888999999999999999996666667999999999999999998
Q ss_pred CCCccccCCCCCcEEEeecccccCCCCcccCCC-------------------------------------CCCcEEEccC
Q 037720 172 PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRL-------------------------------------HMLSRALLSG 214 (369)
Q Consensus 172 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~ 214 (369)
..|..|.++++|++|++++|.+++.....+..+ ++|+.|++++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence 888889999999999999999886433222221 2356666666
Q ss_pred CcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCC
Q 037720 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIP 293 (369)
Q Consensus 215 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~ 293 (369)
|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. |..... ++|++|++++|.++ .+|
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~ 317 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVE 317 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccC
Confidence 66654 35688999999999999999999899999999999999999999975 444443 89999999999999 678
Q ss_pred cCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCccCCC
Q 037720 294 DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLCGKP 364 (369)
Q Consensus 294 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c~~~ 364 (369)
..+..+++|+.|++++|.+++.. +..+++|++|++++|.+++..+. ..+..+....+.+++..|+.+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred cccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 88899999999999999998653 67789999999999999875332 235556666677888777753
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.7e-29 Score=248.75 Aligned_cols=268 Identities=21% Similarity=0.208 Sum_probs=204.9
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ |.+.+..+..+.++++|++|++++ |.+++..|..|.++++|++|++++|.++ .+|
T Consensus 52 ~~L~~L~Ls~-------------N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 52 PRTKALSLSQ-------------NSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp TTCCEEECCS-------------SCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCcCEEECCC-------------CCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 5778888888 888888888999999999999995 7888888889999999999999999999 566
Q ss_pred ccccCCCCCCEEEeecccCCC-CCCccccCCCCCcEEEeecccccCCCCcccCCCCCC--cEEEccCCcc--cccCCccc
Q 037720 151 RHIGKLHRLSVLNIADNYVSG-PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHML--SRALLSGNQI--SGTIPSSI 225 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l 225 (369)
.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 66 89999999999999986 3467899999999999999999753 34555555 9999999988 66666555
Q ss_pred cCCC----------------------------------------------------------------------------
Q 037720 226 SRVY---------------------------------------------------------------------------- 229 (369)
Q Consensus 226 ~~l~---------------------------------------------------------------------------- 229 (369)
..+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 4433
Q ss_pred -----CCCEEEcccCCCcccccccc-----------------------------------------------------CC
Q 037720 230 -----RLTDLDLSTNQISGPIPASL-----------------------------------------------------GK 251 (369)
Q Consensus 230 -----~L~~L~ls~n~l~~~~~~~l-----------------------------------------------------~~ 251 (369)
+|++|++++|.+++.+|..+ ..
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 67777777777776666544 55
Q ss_pred CCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCc--cCCcCcCCCCCCCEEEccCCCCCCCCcc-cCcCCCCcC
Q 037720 252 MPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEG--KIPDAFGPKSYFMVLDLSYNKLSGPIPR-TLSGTSYIG 327 (369)
Q Consensus 252 l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~ 327 (369)
+++|++|++++|.+++..|..+.. ++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 667777777777777666666555 777777777777775 2345677777777777777777764443 466777777
Q ss_pred EEEcccCcCceeCCCCCCCCCCCcccccCCCC
Q 037720 328 YLDLSHNNLCGKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 328 ~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
+|++++|++++.+|.... ++|+.+++++|..
T Consensus 432 ~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l 462 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRI 462 (562)
T ss_dssp EEECCSSCCCGGGGSSCC-TTCSEEECCSSCC
T ss_pred EEECCCCCCCcchhhhhc-CcCCEEECCCCcC
Confidence 777777777776666322 5777888877754
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=6.8e-29 Score=237.29 Aligned_cols=227 Identities=23% Similarity=0.230 Sum_probs=201.9
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
++++.|+|++ +.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 6899999995 788877888899999999999999999987778899999999999999999966666899999999999
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCcccccC-CccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccc
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTI-PSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
+++|.+....+..+..+++|++|++++|+..+.+ +..+.++++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 9999999777778999999999999985544344 457899999999999999998 444 5788999999999999999
Q ss_pred ccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 267 GVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 267 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+..+..+.. ++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 887877776 89999999999999888999999999999999999999888888899999999999999874
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=5.4e-32 Score=247.12 Aligned_cols=234 Identities=23% Similarity=0.235 Sum_probs=141.9
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCC-cccCCcCCC-------CCCCCcEEEccCCcCCccCCccc--cCCCCCCEEE
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGI-SGEIPRCST-------LLPFLRILDLTGNKISGEIPRHI--GKLHRLSVLN 163 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l-~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~ 163 (369)
+.+ .+|..+... |++|++++ +.+ .+.+|..+. .+++|++|++++|.+++.+|..+ ..+++|++|+
T Consensus 53 n~l--~~p~~~~~~--L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 127 (312)
T 1wwl_A 53 DTE--ADLGQFTDI--IKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127 (312)
T ss_dssp CTT--CCCHHHHHH--HHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE
T ss_pred ccc--ccHHHHHHH--Hhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE
Confidence 444 455544433 66666664 444 334554443 56667777777777766666654 6677777777
Q ss_pred eecccCCCCCCccccCC-----CCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccccc--CCccc--cCCCCCCEE
Q 037720 164 IADNYVSGPIPGSIGNL-----SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT--IPSSI--SRVYRLTDL 234 (369)
Q Consensus 164 L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L 234 (369)
+++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+..+ ..+++|++|
T Consensus 128 Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 128 LRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206 (312)
T ss_dssp EESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE
T ss_pred ccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE
Confidence 777777654 5555554 6677777777777666666667777777777777765543 22333 566677777
Q ss_pred EcccCCCcc---ccccccCCCCCCcEEeccCCcccccCCcc-cC-cCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccC
Q 037720 235 DLSTNQISG---PIPASLGKMPDLSTLNLDFNRFSGVIPAS-LL-TSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSY 309 (369)
Q Consensus 235 ~ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 309 (369)
++++|.+++ .....+..+++|++|++++|.+++..|.. +. .++|++|++++|+++ .+|..+. ++|++|++++
T Consensus 207 ~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCS
T ss_pred ECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCC
Confidence 777776662 11223345666777777777666655322 22 166667777776666 5555554 5666677777
Q ss_pred CCCCCCCcccCcCCCCcCEEEcccCcCce
Q 037720 310 NKLSGPIPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 310 n~l~~~~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
|++++. |. +..+++|++|++++|++++
T Consensus 284 N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 284 NRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 666654 44 6666666667776666654
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=6.7e-29 Score=238.13 Aligned_cols=227 Identities=24% Similarity=0.261 Sum_probs=198.5
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
+++++|+|++ +.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 6889999995 788888888899999999999999999988888899999999999999999966666788999999999
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccc
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIP-SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
+++|.++...+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+++. | .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 99999987777789999999999999854433444 5688999999999999999854 4 5788999999999999999
Q ss_pred ccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 267 GVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 267 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+..|..+.. ++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 888877776 89999999999999888889999999999999999999888888889999999999999865
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.9e-29 Score=223.53 Aligned_cols=250 Identities=22% Similarity=0.232 Sum_probs=213.4
Q ss_pred CEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeec
Q 037720 111 SSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRN 190 (369)
Q Consensus 111 ~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 190 (369)
++++.++ +.+. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~-~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 5677774 5554 456533 57899999999999987778899999999999999999977788999999999999999
Q ss_pred cc-ccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccC
Q 037720 191 NR-ISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVI 269 (369)
Q Consensus 191 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 269 (369)
|. +....+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666888999999999999999999888888999999999999999999777777999999999999999999766
Q ss_pred CcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCC
Q 037720 270 PASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDH 348 (369)
Q Consensus 270 ~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 348 (369)
+..+.. ++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++....+..+.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 665655 8999999999999988899999999999999999999987778899999999999999999876554333445
Q ss_pred CCcccccCCCCccCCC
Q 037720 349 LDASSFESNKCLCGKP 364 (369)
Q Consensus 349 l~~l~~~~n~~~c~~~ 364 (369)
++......+...|..|
T Consensus 250 l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHCCSEECCCBEEES
T ss_pred HHhcccccCccccCCc
Confidence 5556666666666543
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.8e-28 Score=225.59 Aligned_cols=259 Identities=24% Similarity=0.322 Sum_probs=165.7
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+..+ +..+++|++|++++ +.+.. + +.+..+++|++|++++|.+++. +
T Consensus 66 ~~L~~L~l~~-------------n~i~~~~~--~~~l~~L~~L~L~~-n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~ 126 (347)
T 4fmz_A 66 TNLEYLNLNG-------------NQITDISP--LSNLVKLTNLYIGT-NKITD-I-SALQNLTNLRELYLNEDNISDI-S 126 (347)
T ss_dssp TTCCEEECCS-------------SCCCCCGG--GTTCTTCCEEECCS-SCCCC-C-GGGTTCTTCSEEECTTSCCCCC-G
T ss_pred CCccEEEccC-------------Cccccchh--hhcCCcCCEEEccC-CcccC-c-hHHcCCCcCCEEECcCCcccCc-h
Confidence 4678888887 44443222 55666666666654 33332 2 2355556666666666655532 2
Q ss_pred ccccCCCCCCEEEeecccCCCCCCc---------------------cccCCCCCcEEEeecccccCCCCcccCCCCCCcE
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPG---------------------SIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 209 (369)
. +..+++|++|++++|.....++. .+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccce
Confidence 2 44555555555555533322211 14444555555555555443221 455555555
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCC
Q 037720 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLE 289 (369)
Q Consensus 210 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 289 (369)
+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.....++|++|++++|.++
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccC
Confidence 5655555553322 6677788888888888875433 77888888888888888753 32222288888999888888
Q ss_pred ccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCC
Q 037720 290 GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 290 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
+. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| ...+++|+.+++++|+.
T Consensus 279 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 54 357888889999999999988888888889999999999999886656 56788889999988874
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.7e-27 Score=237.26 Aligned_cols=134 Identities=25% Similarity=0.241 Sum_probs=121.5
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
+.+++|+|++ |.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4799999995 888877778899999999999999999987788999999999999999999966667899999999999
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCcccc-cCCccccCCCCCCEEEcccCCCc
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISG-TIPSSISRVYRLTDLDLSTNQIS 242 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~ 242 (369)
+++|.+++..+..|+++++|++|++++|.+.+ ..|..+..+++|++|++++|.++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999998777889999999999999999975 46788899999999999988764
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.4e-30 Score=236.14 Aligned_cols=247 Identities=23% Similarity=0.233 Sum_probs=207.1
Q ss_pred ccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCC-ccCCcccc-------CCCCCCEEEeecccCCCCCCc
Q 037720 104 VCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKIS-GEIPRHIG-------KLHRLSVLNIADNYVSGPIPG 175 (369)
Q Consensus 104 l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~ 175 (369)
+...++|++|++++ +.+ .+|..+... |++|++++|.++ ..+|..+. ++++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~-n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRV-DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHC-CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeecc-ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34556788899986 555 677655443 899999999994 45666665 799999999999999988888
Q ss_pred cc--cCCCCCcEEEeecccccCCCCcccCCC-----CCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccc--cc
Q 037720 176 SI--GNLSSLMHLDVRNNRISGPIPGCFGRL-----HMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGP--IP 246 (369)
Q Consensus 176 ~~--~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~ 246 (369)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8999999999999999977 7777776 9999999999999988889999999999999999998765 33
Q ss_pred ccc--CCCCCCcEEeccCCccccc--CCccc-Cc-CCCCEEEccCCcCCccCC-cCcCCCCCCCEEEccCCCCCCCCccc
Q 037720 247 ASL--GKMPDLSTLNLDFNRFSGV--IPASL-LT-SGVNNLNLSKNSLEGKIP-DAFGPKSYFMVLDLSYNKLSGPIPRT 319 (369)
Q Consensus 247 ~~l--~~l~~L~~L~L~~n~l~~~--~~~~~-~~-~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~ 319 (369)
..+ ..+++|++|++++|.+++. .+..+ .. ++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 444 8899999999999999842 22222 22 799999999999998775 45677899999999999999 77877
Q ss_pred CcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCc
Q 037720 320 LSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCL 360 (369)
Q Consensus 320 l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~ 360 (369)
+. ++|++||+++|++++. |....+++|+.+++++|+.-
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 76 8999999999999965 77777889999999999864
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5.4e-27 Score=224.76 Aligned_cols=248 Identities=21% Similarity=0.217 Sum_probs=192.1
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+. | .+..+++|++|++++ +.+++ +| ++.+++|++|++++|.+++. +
T Consensus 42 ~~L~~L~Ls~-------------n~l~~~-~-~l~~l~~L~~L~Ls~-n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 42 ATLTSLDCHN-------------SSITDM-T-GIEKLTGLTKLICTS-NNITT-LD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCEEECCS-------------SCCCCC-T-TGGGCTTCSEEECCS-SCCSC-CC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred CCCCEEEccC-------------CCcccC-h-hhcccCCCCEEEccC-CcCCe-Ec--cccCCCCCEEECcCCCCcee-e
Confidence 4688899988 777764 4 688899999999995 66765 33 78889999999999999864 3
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCC
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYR 230 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 230 (369)
++++++|++|++++|++++ ++ ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 7889999999999999886 44 78889999999999998864 3778888999999888665555 4778888
Q ss_pred CCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccC
Q 037720 231 LTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSY 309 (369)
Q Consensus 231 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 309 (369)
|++|++++|++++ +| +..+++|+.|++++|.+++. + +.. ++|++|++++|++++ +| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 8999999888886 34 77888888888888888865 2 333 788888888888886 55 77888888888888
Q ss_pred CCCCCCCcccCcCCC-------CcCEEEcccCcCceeCCCCCCCCCCCcccccCCC
Q 037720 310 NKLSGPIPRTLSGTS-------YIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNK 358 (369)
Q Consensus 310 n~l~~~~~~~l~~l~-------~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~ 358 (369)
|++++..+..+..+. +|++|++++|.+.|.+|. ..+++|+.+++++|+
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNT 297 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCT
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCc
Confidence 888876655555544 456667777776666664 355667777776665
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3e-27 Score=218.67 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=178.2
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.+++++ +.+... +.+..+++|++|++++ +.+.+ ++. +..+++|++|++++|.++. +
T Consensus 44 ~~L~~L~l~~-------------~~i~~~--~~~~~~~~L~~L~l~~-n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~- 103 (347)
T 4fmz_A 44 ESITKLVVAG-------------EKVASI--QGIEYLTNLEYLNLNG-NQITD-ISP-LSNLVKLTNLYIGTNKITD-I- 103 (347)
T ss_dssp TTCSEEECCS-------------SCCCCC--TTGGGCTTCCEEECCS-SCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-
T ss_pred ccccEEEEeC-------------Cccccc--hhhhhcCCccEEEccC-Ccccc-chh-hhcCCcCCEEEccCCcccC-c-
Confidence 4688899988 555442 3488899999999996 56664 344 8899999999999999985 3
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCC
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYR 230 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 230 (369)
+.+.++++|++|++++|.+++. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 4699999999999999999854 43 8899999999999996654433 37777777888777777664322 566666
Q ss_pred CCEEEcccCCCccccc--------------------cccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCC
Q 037720 231 LTDLDLSTNQISGPIP--------------------ASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLE 289 (369)
Q Consensus 231 L~~L~ls~n~l~~~~~--------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 289 (369)
|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ +.. ++|++|++++|.++
T Consensus 179 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 7777777666653321 014445556666666665554332 222 56666666666665
Q ss_pred ccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC-CCCCCCCcccccCCCCcc
Q 037720 290 GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG-SPFDHLDASSFESNKCLC 361 (369)
Q Consensus 290 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~l~~~~n~~~c 361 (369)
+. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..|.. ..+++|+.+++++|+...
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 42 3466666677777777766643 34566677777777777776555442 346677777777776543
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.8e-29 Score=241.00 Aligned_cols=247 Identities=23% Similarity=0.225 Sum_probs=201.7
Q ss_pred cCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCc
Q 037720 105 CKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLM 184 (369)
Q Consensus 105 ~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (369)
..+++|++|+|++ +.+.+..|..+..+++|++|++++|.+++..| +..+++|++|+|++|.+++. + ..++|+
T Consensus 31 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred ccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcC
Confidence 3455899999996 77887777889999999999999999986655 88999999999999998843 2 238899
Q ss_pred EEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccC-CCCCCcEEeccCC
Q 037720 185 HLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLG-KMPDLSTLNLDFN 263 (369)
Q Consensus 185 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~-~l~~L~~L~L~~n 263 (369)
+|++++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999876554 357899999999999988888889999999999999999987787775 7899999999999
Q ss_pred cccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc-eeCCC
Q 037720 264 RFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC-GKIPA 342 (369)
Q Consensus 264 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~-g~ip~ 342 (369)
.+++.. .....++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|.
T Consensus 180 ~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 180 FIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCCEEE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 998763 33335899999999999996444 58889999999999999995 7778889999999999999988 55554
Q ss_pred -CCCCCCCCccccc-------CCCCccCCCC
Q 037720 343 -GSPFDHLDASSFE-------SNKCLCGKPL 365 (369)
Q Consensus 343 -~~~~~~l~~l~~~-------~n~~~c~~~~ 365 (369)
...++.+..+++. .|+..|.++.
T Consensus 257 ~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 2345556666665 7788777653
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.3e-27 Score=227.23 Aligned_cols=259 Identities=26% Similarity=0.377 Sum_probs=129.4
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+..+ +.++++|++|++++ +.+.+..+ +.++++|++|++++|.+++..+
T Consensus 68 ~~L~~L~Ls~-------------n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 129 (466)
T 1o6v_A 68 NNLTQINFSN-------------NQLTDITP--LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTLFNNQITDIDP 129 (466)
T ss_dssp TTCCEEECCS-------------SCCCCCGG--GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred cCCCEEECCC-------------CccCCchh--hhccccCCEEECCC-CccccChh--hcCCCCCCEEECCCCCCCCChH
Confidence 3677777777 55554433 66666666666664 44443332 5666666666666666664322
Q ss_pred ccccCCCCCCEEEeecccCCCCCC-------------------ccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIP-------------------GSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
+.++++|++|++++|.+.+... ..+.++++|++|++++|.+.+. ..+..+++|++|+
T Consensus 130 --~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 130 --LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 205 (466)
T ss_dssp --GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred --HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEE
Confidence 5566666666666665553110 1133444455555555554422 1244444444554
Q ss_pred ccCCcccccCC--------------------ccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCc
Q 037720 212 LSGNQISGTIP--------------------SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPA 271 (369)
Q Consensus 212 l~~n~l~~~~~--------------------~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 271 (369)
+++|.+.+..+ ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 206 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 206 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred ecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 44444443222 123334444444444444443222 4444455555555554443322
Q ss_pred ccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCc
Q 037720 272 SLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDA 351 (369)
Q Consensus 272 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~ 351 (369)
....++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. +....+++|+.
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINW 357 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCE
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCE
Confidence 1111455555555555553322 4455555555555555554443 44555555566655555532 33344555666
Q ss_pred ccccCCCC
Q 037720 352 SSFESNKC 359 (369)
Q Consensus 352 l~~~~n~~ 359 (369)
+++++|+.
T Consensus 358 L~l~~n~l 365 (466)
T 1o6v_A 358 LSAGHNQI 365 (466)
T ss_dssp EECCSSCC
T ss_pred EeCCCCcc
Confidence 66666543
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-29 Score=231.62 Aligned_cols=248 Identities=21% Similarity=0.197 Sum_probs=166.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
+.+...+...+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l- 95 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL- 95 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-
T ss_pred cchhhhHHHHhccCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-
Confidence 444444444455666778888875 66666656667777778888888877775443 77777788888887777632
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcccccccc-CCC
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASL-GKM 252 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l-~~l 252 (369)
+ ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+
T Consensus 96 ~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 L----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp E----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred c----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 2 2367777788777777554432 4667777787777776666677777777888888777776655555 367
Q ss_pred CCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcc
Q 037720 253 PDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLS 332 (369)
Q Consensus 253 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 332 (369)
++|++|++++|.+++. +.....++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|+++
T Consensus 169 ~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 7778888877777754 333334777778888777774 3444777777788888877777 466667777777888888
Q ss_pred cCcCc-eeCCCC-CCCCCCCccccc
Q 037720 333 HNNLC-GKIPAG-SPFDHLDASSFE 355 (369)
Q Consensus 333 ~N~l~-g~ip~~-~~~~~l~~l~~~ 355 (369)
+|.++ +.+|.. ..+++++.+++.
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCccCcCHHHHHhccccceEEECC
Confidence 77777 444431 234445555554
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=8.3e-27 Score=208.28 Aligned_cols=182 Identities=25% Similarity=0.301 Sum_probs=114.3
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEc
Q 037720 133 PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 212 (369)
+++++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 45666666666666555556666666666666666666444444566666666666666666555555666666666666
Q ss_pred cCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCcc
Q 037720 213 SGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGK 291 (369)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 291 (369)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 666666555555666667777777777666554455666666666666666666544443433 5666666666666654
Q ss_pred CCcCcCCCCCCCEEEccCCCCCC
Q 037720 292 IPDAFGPKSYFMVLDLSYNKLSG 314 (369)
Q Consensus 292 ~~~~l~~l~~L~~L~Ls~n~l~~ 314 (369)
.+..+..+++|+.|++++|.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHhccccCCCEEEecCCCeeC
Confidence 44556666677777777776653
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=223.66 Aligned_cols=216 Identities=27% Similarity=0.368 Sum_probs=166.5
Q ss_pred CCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcE
Q 037720 130 TLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 209 (369)
..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ++.+++|++|++++|.+++. ..+..+++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 247 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTD 247 (466)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCE
Confidence 3444455555555554422 234555566666666666554333 55566777777777766642 35778889999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCC
Q 037720 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLE 289 (369)
Q Consensus 210 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 289 (369)
|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ ....++|++|++++|+++
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCS
T ss_pred EECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCC
Confidence 9999999886544 8899999999999999986544 8899999999999999997654 222389999999999999
Q ss_pred ccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCCcc
Q 037720 290 GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKCLC 361 (369)
Q Consensus 290 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~~c 361 (369)
+..| +..+++|+.|++++|++++. ..+..+++|++|++++|++++..| ...+++|+.+++++|++..
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred Cchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 7765 78999999999999999975 478899999999999999998887 6788999999999998765
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.2e-27 Score=231.86 Aligned_cols=268 Identities=21% Similarity=0.219 Sum_probs=228.3
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+..+..+.++++|++|++++ +.+.+..+..|.++++|++|++++|.+++..|
T Consensus 28 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCS-------------CCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccEEEccC-------------CccCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4788999998 889998889999999999999996 67887778889999999999999999998888
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccC-CCCcccCCCCCCcEEEccCCcccccCCccccCCC
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISG-PIPGCFGRLHMLSRALLSGNQISGTIPSSISRVY 229 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 229 (369)
..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 899999999999999999996655579999999999999999986 4689999999999999999999988788888888
Q ss_pred CC----CEEEcccCCCccccccccCCCCCCcEEeccCC------------------------------------------
Q 037720 230 RL----TDLDLSTNQISGPIPASLGKMPDLSTLNLDFN------------------------------------------ 263 (369)
Q Consensus 230 ~L----~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n------------------------------------------ 263 (369)
+| +.+++++|.+++..+..+... +|++|++++|
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 88 899999999998777777655 7888888776
Q ss_pred ----------------cccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCc
Q 037720 264 ----------------RFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYI 326 (369)
Q Consensus 264 ----------------~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 326 (369)
.+.+..+..+.. ++|++|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L 327 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSL 327 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSC
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccccc
Confidence 223333444444 78899999999888 577778888 8999999999888 5554 477889
Q ss_pred CEEEcccCcCceeCCCCCCCCCCCcccccCCCC
Q 037720 327 GYLDLSHNNLCGKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 327 ~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
++|++++|.+.+.+|. ..+++|+.+++++|..
T Consensus 328 ~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp CEEEEESCBSCCBCCC-CBCTTCCEEECCSSCC
T ss_pred CEEeCcCCcccccccc-ccCCCCCEEeCcCCcc
Confidence 9999999998877776 6788999999988864
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1e-26 Score=208.26 Aligned_cols=208 Identities=21% Similarity=0.228 Sum_probs=109.9
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEcc
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLS 213 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~ 213 (369)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34445555554444333344444555555555554443333344445555555555555544444445555555555555
Q ss_pred CCcccccCCccccCCCCCCEEEcccCCCccc-cccccCCCCCCcEEeccCCcccccCCcccCc-CCCC----EEEccCCc
Q 037720 214 GNQISGTIPSSISRVYRLTDLDLSTNQISGP-IPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVN----NLNLSKNS 287 (369)
Q Consensus 214 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~----~L~L~~n~ 287 (369)
+|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+.. ++++ +|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555443333455555555555555555432 3455555555555555555555443333332 3333 56666666
Q ss_pred CCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 288 LEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 288 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
+++..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 6644443333 33677777777777765555566777777777777777765553
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.4e-28 Score=221.66 Aligned_cols=239 Identities=22% Similarity=0.233 Sum_probs=198.9
Q ss_pred CCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEee
Q 037720 110 LSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVR 189 (369)
Q Consensus 110 L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 189 (369)
++..+++. +.+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCT-TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccc-cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44455653 44544444445667899999999999998777899999999999999999986543 8999999999999
Q ss_pred cccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccC
Q 037720 190 NNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVI 269 (369)
Q Consensus 190 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 269 (369)
+|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 99998432 348999999999999865544 3678999999999999887888999999999999999999877
Q ss_pred CcccCc--CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC-CCCC
Q 037720 270 PASLLT--SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA-GSPF 346 (369)
Q Consensus 270 ~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~ 346 (369)
+..+.. ++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|++|++++|++++ +|. ...+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcC
Confidence 776643 8999999999999965 3 23458999999999999995 45558899999999999999995 565 4567
Q ss_pred CCCCcccccCCCCccCC
Q 037720 347 DHLDASSFESNKCLCGK 363 (369)
Q Consensus 347 ~~l~~l~~~~n~~~c~~ 363 (369)
++|+.+++++|++.|++
T Consensus 237 ~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTCCEEECTTCCCBHHH
T ss_pred CCCCEEEccCCCccCcC
Confidence 89999999999998763
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.7e-26 Score=205.58 Aligned_cols=208 Identities=22% Similarity=0.221 Sum_probs=184.9
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
++|++|++++ +.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4799999996 778877777899999999999999999977777899999999999999999977778899999999999
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCccccc-CCccccCCCCCCEEEcccCCCccccccccCCCCCCc----EEeccC
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGT-IPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLS----TLNLDF 262 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~----~L~L~~ 262 (369)
+++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999987777899999999999999999863 689999999999999999999987777777766666 899999
Q ss_pred CcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCC
Q 037720 263 NRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPI 316 (369)
Q Consensus 263 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 316 (369)
|.+++..+..+...+|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 999977776666678999999999999777777899999999999999998543
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=8.8e-26 Score=216.37 Aligned_cols=250 Identities=19% Similarity=0.172 Sum_probs=147.3
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ +.+.+. + +..+++|++|++++ +.+.+. + ++.+++|++|++++|.+++ ++
T Consensus 64 ~~L~~L~Ls~-------------n~l~~~-~--~~~l~~L~~L~Ls~-N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~ 122 (457)
T 3bz5_A 64 TGLTKLICTS-------------NNITTL-D--LSQNTNLTYLACDS-NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD 122 (457)
T ss_dssp TTCSEEECCS-------------SCCSCC-C--CTTCTTCSEEECCS-SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC
T ss_pred CCCCEEEccC-------------CcCCeE-c--cccCCCCCEEECcC-CCCcee-e--cCCCCcCCEEECCCCcCCe-ec
Confidence 4678888888 666653 2 67777777777774 555543 2 6677777777777777775 33
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCC
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYR 230 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 230 (369)
+..+++|++|++++|++++. + ++++++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++
T Consensus 123 --~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 66777777777777777653 2 555666666666666433333 24555566666666665553 23 445555
Q ss_pred CCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcC--------------
Q 037720 231 LTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDA-------------- 295 (369)
Q Consensus 231 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~-------------- 295 (369)
|+.|++++|.+++. .++.+++|++|++++|.+++ +| +.. ++|++|++++|++++..+..
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 55555555555532 24455555555555555554 22 212 45555555555555432222
Q ss_pred ---------------cCCCCCCCEEEccCCCCCCCCcc--------cCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcc
Q 037720 296 ---------------FGPKSYFMVLDLSYNKLSGPIPR--------TLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDAS 352 (369)
Q Consensus 296 ---------------l~~l~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l 352 (369)
+..+++|+.|++++|...+.+|. .+..+++|++|++++|+++| +| ...+++|+.+
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L 344 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSL 344 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEE
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEE
Confidence 23445666666666655544442 24455677777777777776 33 4566777777
Q ss_pred cccCCCC
Q 037720 353 SFESNKC 359 (369)
Q Consensus 353 ~~~~n~~ 359 (369)
++++|+.
T Consensus 345 ~l~~N~l 351 (457)
T 3bz5_A 345 SCVNAHI 351 (457)
T ss_dssp ECCSSCC
T ss_pred ECCCCCC
Confidence 7777764
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=229.77 Aligned_cols=221 Identities=24% Similarity=0.234 Sum_probs=192.2
Q ss_pred CCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCc
Q 037720 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208 (369)
Q Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 208 (369)
...+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3456689999999999998888899999999999999999986554 899999999999999998543 238999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc--CCCCEEEccCC
Q 037720 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT--SGVNNLNLSKN 286 (369)
Q Consensus 209 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~~n 286 (369)
+|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+.. ++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999866554 4578999999999999888889999999999999999999988877753 89999999999
Q ss_pred cCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC-CCCCCCCCcccccCCCCccCC
Q 037720 287 SLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA-GSPFDHLDASSFESNKCLCGK 363 (369)
Q Consensus 287 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~l~~l~~~~n~~~c~~ 363 (369)
.+++..+ +..+++|+.|+|++|++++..+ .+..+++|++|++++|.+++ +|. ...+++|..+++++|++.|++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 9996633 4468999999999999997544 58899999999999999996 555 456789999999999999764
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.9e-25 Score=198.30 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=174.8
Q ss_pred CcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccC
Q 037720 135 LRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214 (369)
Q Consensus 135 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 214 (369)
.++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 467788888887 5666554 6899999999999977667899999999999999999977667788999999999999
Q ss_pred CcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCC
Q 037720 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIP 293 (369)
Q Consensus 215 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~ 293 (369)
|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 9999777778899999999999999999887888899999999999999998766555555 899999999999997777
Q ss_pred cCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeC
Q 037720 294 DAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKI 340 (369)
Q Consensus 294 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~i 340 (369)
..|..+++|++|++++|++++..+..+..+++|++|++++|.+...-
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 77888999999999999999777777888999999999999886543
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=8.1e-26 Score=203.91 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=132.7
Q ss_pred CCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCc
Q 037720 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208 (369)
Q Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 208 (369)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 455677888888888877 4555543 577788888888776666677777788888888777764322 25667777
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCc
Q 037720 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNS 287 (369)
Q Consensus 209 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 287 (369)
+|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.. ++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 55666667777777777777777655566667777777777777666544444333 566666666666
Q ss_pred CCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 288 LEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 288 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+++..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66444444555666666666666665 45555555556666666666554
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.8e-26 Score=216.19 Aligned_cols=198 Identities=20% Similarity=0.303 Sum_probs=126.6
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEc
Q 037720 133 PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 212 (369)
++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 455566666665554 3432 2556666666666653 2221 1577888888888775 55 4788888888888
Q ss_pred cCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccC
Q 037720 213 SGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKI 292 (369)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 292 (369)
++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|... ++|++|++++|.++ .+
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-EL 230 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-cc
Confidence 8888774 55433 478888888888875 44 57788888888888888775 33222 57888888888777 56
Q ss_pred CcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCC
Q 037720 293 PDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNK 358 (369)
Q Consensus 293 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~ 358 (369)
|. +..+++|++|++++|++++ +|.. .++|++|++++|++++ +|.. +++++.+++++|.
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENI 288 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSC
T ss_pred cc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCc
Confidence 63 7778888888888888775 3332 2455666666666553 4432 2444555554443
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.7e-25 Score=199.92 Aligned_cols=202 Identities=20% Similarity=0.263 Sum_probs=135.2
Q ss_pred CCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEE
Q 037720 131 LLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRA 210 (369)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 210 (369)
.+++|++|++++|.++. + ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45556666666666552 2 2355666666666666666532 355666666666666666665555556666666666
Q ss_pred EccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCC
Q 037720 211 LLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLE 289 (369)
Q Consensus 211 ~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 289 (369)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 66666666555555666777777777777776555555667777777777777777555544444 67777777777777
Q ss_pred ccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC
Q 037720 290 GKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343 (369)
Q Consensus 290 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~ 343 (369)
+..+..+..+++|+.|++++|.+.+. +++|+.++++.|.++|.+|..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 76666677888888888888877643 456788888888888888873
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=5.9e-25 Score=198.26 Aligned_cols=204 Identities=22% Similarity=0.201 Sum_probs=179.4
Q ss_pred cccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCC
Q 037720 103 AVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSS 182 (369)
Q Consensus 103 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (369)
.+.++++++++++++ +.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++. +. ...+++
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTT
T ss_pred cccccCCccEEECCC-CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCc
Confidence 467889999999995 6666 5666553 7899999999999988888999999999999999999854 33 378999
Q ss_pred CcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC
Q 037720 183 LMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262 (369)
Q Consensus 183 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 262 (369)
|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999998 6788899999999999999999977778899999999999999999987777889999999999999
Q ss_pred CcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCC
Q 037720 263 NRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314 (369)
Q Consensus 263 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 314 (369)
|.+++..+..+.. ++|++|++++|+++ .+|..+...++|+.|++++|.+..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999665555554 89999999999999 778888888999999999999874
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-25 Score=221.15 Aligned_cols=261 Identities=24% Similarity=0.344 Sum_probs=140.8
Q ss_pred CCCCCC-CCCCCCCCcceEe------CCCCCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCC
Q 037720 48 IFNSWT-GNDCCHNWYGVSC------DPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEG 120 (369)
Q Consensus 48 ~~~~W~-~~~~c~~w~gv~c------~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 120 (369)
+++.|. +.++|. |.|..| ......++.|++++ +.+. .+|..+. ++|++|++++ |.
T Consensus 11 ~w~~W~~~~~~~~-~~~r~~~~~~~~~c~~~~l~~L~ls~-------------n~L~-~lp~~l~--~~L~~L~L~~-N~ 72 (622)
T 3g06_A 11 VWSAWRRAAPAEE-SRGRAAVVQKMRACLNNGNAVLNVGE-------------SGLT-TLPDCLP--AHITTLVIPD-NN 72 (622)
T ss_dssp HHHHHHHTCCGGG-HHHHHHHHHHHHHHHHHCCCEEECCS-------------SCCS-CCCSCCC--TTCSEEEECS-CC
T ss_pred HHHHHHhcCCcch-hccccccCcccccccCCCCcEEEecC-------------CCcC-ccChhhC--CCCcEEEecC-CC
Confidence 344565 566775 866422 11123578888888 4454 4444443 5677777764 44
Q ss_pred CcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcc
Q 037720 121 ISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGC 200 (369)
Q Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 200 (369)
++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|..
T Consensus 73 l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~ 139 (622)
T 3g06_A 73 LT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL 139 (622)
T ss_dssp CS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC
T ss_pred CC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC
Confidence 44 3443 3566667777776666 3443 45666666666666663 333 34455555555555543 2322
Q ss_pred cCCCCCCcEEEccCCcccccCCccc-----------------cCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCC
Q 037720 201 FGRLHMLSRALLSGNQISGTIPSSI-----------------SRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFN 263 (369)
Q Consensus 201 l~~l~~L~~L~l~~n~l~~~~~~~l-----------------~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n 263 (369)
+++|++|++++|.+++ +|..+ ..+++|+.|++++|.+++ +|.. .++|+.|++++|
T Consensus 140 ---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N 211 (622)
T 3g06_A 140 ---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNN 211 (622)
T ss_dssp ---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred ---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCC
Confidence 2455555555555442 22211 223566666666666653 2321 245555555555
Q ss_pred cccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC
Q 037720 264 RFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343 (369)
Q Consensus 264 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~ 343 (369)
.++. +|.. .++|++|++++|.+++ +| ..+++|+.|++++|+|+ .+|. .+++|++|++++|+++ .+|..
T Consensus 212 ~l~~-l~~~--~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~ 279 (622)
T 3g06_A 212 RLTS-LPAL--PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPES 279 (622)
T ss_dssp CCSS-CCCC--CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGG
T ss_pred cccc-cCCC--CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHH
Confidence 5552 2221 1456666666666663 33 33456666666666666 3343 4556666666666666 55542
Q ss_pred -CCCCCCCcccccCCCC
Q 037720 344 -SPFDHLDASSFESNKC 359 (369)
Q Consensus 344 -~~~~~l~~l~~~~n~~ 359 (369)
..+++|+.+++++|+.
T Consensus 280 l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp GGGSCTTCEEECCSCCC
T ss_pred HhhccccCEEEecCCCC
Confidence 3455666666666654
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.3e-24 Score=206.40 Aligned_cols=236 Identities=22% Similarity=0.354 Sum_probs=131.0
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
|.+.+ +| .+.++++|++|++++ +.+.+ +|..+ ++|++|++++|.+++ +| .+.++++|++|++++|.+++ +
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~-N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDN-NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCS-SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCC-CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 55554 45 477777777777774 45553 44332 467777777777764 44 46777777777777777763 3
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCC
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 253 (369)
|... ++|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. +++|++|++++|.+++ +|.. .+
T Consensus 211 ~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 211 PDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cC
Confidence 3322 46667777777666 455 36677777777777777663 3332 2455566666555553 2321 24
Q ss_pred CCcEEeccCCcccc--cCCccc---------------CcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCC
Q 037720 254 DLSTLNLDFNRFSG--VIPASL---------------LTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPI 316 (369)
Q Consensus 254 ~L~~L~L~~n~l~~--~~~~~~---------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 316 (369)
+|++|++++|.+++ ..|..+ ..++|++|++++|++++ +|.. +++|++|++++|+++ .+
T Consensus 278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 45555555554443 111100 01467777777777764 4443 467778888888777 35
Q ss_pred cccCcCCCCcCEEEcccCcCce--eCCCC-CCC-------------CCCCcccccCCCCc
Q 037720 317 PRTLSGTSYIGYLDLSHNNLCG--KIPAG-SPF-------------DHLDASSFESNKCL 360 (369)
Q Consensus 317 ~~~l~~l~~L~~L~ls~N~l~g--~ip~~-~~~-------------~~l~~l~~~~n~~~ 360 (369)
|. .+++|++|++++|++++ .+|.. ..+ ++|+.+++++|+..
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 54 35677788888887776 56652 112 56677777777654
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=4.3e-25 Score=197.40 Aligned_cols=212 Identities=22% Similarity=0.272 Sum_probs=179.6
Q ss_pred cccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCC
Q 037720 103 AVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSS 182 (369)
Q Consensus 103 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (369)
....+++|++|++++ +.+. .+ ..+..+++|++|++++|.+++. +.+.++++|++|++++|.+++..+..+.++++
T Consensus 36 ~~~~l~~L~~L~l~~-~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANN-SDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTT-SCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCC-CCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 355678899999985 5554 23 3477899999999999999853 47889999999999999999777777889999
Q ss_pred CcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC
Q 037720 183 LMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262 (369)
Q Consensus 183 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 262 (369)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999999987777889999999999999999877777788999999999999999977777788999999999999
Q ss_pred CcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCc
Q 037720 263 NRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYI 326 (369)
Q Consensus 263 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 326 (369)
|.+++..+..+.. ++|++|++++|.+.+. +++|+.|+++.|+++|.+|.+++.++..
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 9999877766655 8999999999987754 4578899999999999999998877654
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.7e-24 Score=189.73 Aligned_cols=196 Identities=20% Similarity=0.239 Sum_probs=133.1
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeeccc-CCCCCCccccCCCCCcEEEeec-ccccCCCCcccCCCCCCcEEE
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY-VSGPIPGSIGNLSSLMHLDVRN-NRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~ 211 (369)
+|++|++++|.+++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776555567777777777777775 6644445677777777777777 777765556677777777777
Q ss_pred ccCCcccccCCccccCCCCCC---EEEcccC-CCccccccccCCCCCCc-EEeccCCcccccCCcccCcCCCCEEEccCC
Q 037720 212 LSGNQISGTIPSSISRVYRLT---DLDLSTN-QISGPIPASLGKMPDLS-TLNLDFNRFSGVIPASLLTSGVNNLNLSKN 286 (369)
Q Consensus 212 l~~n~l~~~~~~~l~~l~~L~---~L~ls~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n 286 (369)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+..++|++|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 77777764 554 66667776 8888888 77766666677788888 888888877733333333356777777777
Q ss_pred c-CCccCCcCcCCC-CCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccC
Q 037720 287 S-LEGKIPDAFGPK-SYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334 (369)
Q Consensus 287 ~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 334 (369)
+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 4 665555666666 6777777777777643 332 4556666666655
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=1.4e-27 Score=219.79 Aligned_cols=265 Identities=14% Similarity=0.197 Sum_probs=210.9
Q ss_pred CCCCCCcceEeCCCCCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCC--CCCCEEecCCCCCCcccCCcCCCCCC
Q 037720 56 DCCHNWYGVSCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKL--PHLSSLTLTDWEGISGEIPRCSTLLP 133 (369)
Q Consensus 56 ~~c~~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~l~~~~~~~~~~l~ 133 (369)
-.|..|.++.|+. ..++.+++++ +.+. +..+..+ ++++.|++++ +.+.+..+. +..++
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~-------------~~~~---~~~~~~~~~~~l~~L~l~~-n~l~~~~~~-~~~~~ 93 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTG-------------KNLH---PDVTGRLLSQGVIAFRCPR-SFMDQPLAE-HFSPF 93 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTT-------------CBCC---HHHHHHHHHTTCSEEECTT-CEECSCCCS-CCCCB
T ss_pred HHHHHHHHHhcCc--hhheeecccc-------------ccCC---HHHHHhhhhccceEEEcCC-ccccccchh-hccCC
Confidence 4565699998864 3578899988 4444 3455666 8999999995 677766555 56799
Q ss_pred CCcEEEccCCcCCcc-CCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecc-cccCC-CCcccCCCCCCcEE
Q 037720 134 FLRILDLTGNKISGE-IPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNN-RISGP-IPGCFGRLHMLSRA 210 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L 210 (369)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 999999999999866 7888899999999999999998777888899999999999999 67652 56668889999999
Q ss_pred EccCC-ccccc-CCccccCCC-CCCEEEcccC--CCc-cccccccCCCCCCcEEeccCCc-ccccCCcccCc-CCCCEEE
Q 037720 211 LLSGN-QISGT-IPSSISRVY-RLTDLDLSTN--QIS-GPIPASLGKMPDLSTLNLDFNR-FSGVIPASLLT-SGVNNLN 282 (369)
Q Consensus 211 ~l~~n-~l~~~-~~~~l~~l~-~L~~L~ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~ 282 (369)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.. ++|++|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 99999 88754 577788899 9999999999 455 4567778889999999999999 77666666655 9999999
Q ss_pred ccCCc-CCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC
Q 037720 283 LSKNS-LEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG 343 (369)
Q Consensus 283 L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~ 343 (369)
+++|. ++......+..+++|+.|++++| ++......+. ..++.|++++|++++..|..
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 99995 43333336888999999999999 5543333222 23666779999999988874
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.3e-24 Score=188.89 Aligned_cols=206 Identities=17% Similarity=0.193 Sum_probs=175.0
Q ss_pred CCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeeccc-ccCCCCcccCCCCCCcEEEccC-CcccccCC
Q 037720 145 ISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNR-ISGPIPGCFGRLHMLSRALLSG-NQISGTIP 222 (369)
Q Consensus 145 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~ 222 (369)
++ .+|. +. ++|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 44 5565 43 489999999999997666689999999999999997 8877777899999999999998 99997777
Q ss_pred ccccCCCCCCEEEcccCCCccccccccCCCCCCc---EEeccCC-cccccCCcccCc-CCCC-EEEccCCcCCccCCcCc
Q 037720 223 SSISRVYRLTDLDLSTNQISGPIPASLGKMPDLS---TLNLDFN-RFSGVIPASLLT-SGVN-NLNLSKNSLEGKIPDAF 296 (369)
Q Consensus 223 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~-~~L~-~L~L~~n~l~~~~~~~l 296 (369)
..+.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+.. ++|+ +|++++|+++...+..+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 889999999999999999986 665 88888888 9999999 898776666665 8999 99999999994334444
Q ss_pred CCCCCCCEEEccCCC-CCCCCcccCcCC-CCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCC
Q 037720 297 GPKSYFMVLDLSYNK-LSGPIPRTLSGT-SYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 297 ~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
.. ++|+.|++++|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+++++.+++.++..
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC--
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCccC
Confidence 44 899999999995 997777889999 99999999999998 67765 789999999988754
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.2e-24 Score=188.02 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=137.8
Q ss_pred CCCCCCcceEeCCCCCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCC
Q 037720 56 DCCHNWYGVSCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFL 135 (369)
Q Consensus 56 ~~c~~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L 135 (369)
+||. |.|+.|.. ..+.+++++ +.+. .+|..+. +++++|++++ +.+.+..+..+..+++|
T Consensus 3 ~Cp~-~~gC~C~~---~~~~l~~~~-------------~~l~-~~p~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L 61 (251)
T 3m19_A 3 TCET-VTGCTCNE---GKKEVDCQG-------------KSLD-SVPSGIP--ADTEKLDLQS-TGLATLSDATFRGLTKL 61 (251)
T ss_dssp -CHH-HHSSEEEG---GGTEEECTT-------------CCCS-SCCSCCC--TTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred cCCC-CCceEcCC---CCeEEecCC-------------CCcc-ccCCCCC--CCCCEEEccC-CCcCccCHhHhcCcccC
Confidence 4565 99999953 234577777 4343 2343333 5778888875 66776666677778888
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCC
Q 037720 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 215 (369)
++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 88888888887766777777888888888888887666666777788888888888777666666777777788888777
Q ss_pred cccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccccc
Q 037720 216 QISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268 (369)
Q Consensus 216 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 268 (369)
++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77755555677777777777777777766666677777777777777777654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=198.11 Aligned_cols=199 Identities=24% Similarity=0.241 Sum_probs=94.3
Q ss_pred CCCCEEEeecccCCCCCCccc--cCCCCCcEEEeecccccCCCC----cccCCCCCCcEEEccCCcccccCCccccCCCC
Q 037720 157 HRLSVLNIADNYVSGPIPGSI--GNLSSLMHLDVRNNRISGPIP----GCFGRLHMLSRALLSGNQISGTIPSSISRVYR 230 (369)
Q Consensus 157 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 230 (369)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 335555555555544444444 444555555555555443322 12234445555555555554444445555555
Q ss_pred CCEEEcccCCCccc--c--ccccCCCCCCcEEeccCCcccccCC--ccc-Cc-CCCCEEEccCCcCCccCCcCcCCC---
Q 037720 231 LTDLDLSTNQISGP--I--PASLGKMPDLSTLNLDFNRFSGVIP--ASL-LT-SGVNNLNLSKNSLEGKIPDAFGPK--- 299 (369)
Q Consensus 231 L~~L~ls~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~--~~~-~~-~~L~~L~L~~n~l~~~~~~~l~~l--- 299 (369)
|++|++++|++.+. + +..+..+++|++|++++|.++...+ ..+ .. ++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 55555555554321 1 1112345555555555555542111 001 11 455555555555555444444443
Q ss_pred CCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccCCCC
Q 037720 300 SYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 300 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~n~~ 359 (369)
++|++|++++|+++ .+|..+. ++|++|++++|++++ +|....+++|+.+++++|+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCC
Confidence 45555555555555 3444442 455555666555553 23333445555555555554
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=196.79 Aligned_cols=226 Identities=20% Similarity=0.177 Sum_probs=181.6
Q ss_pred CCCCCCEEecCCCCCCccc-CCc--CCCCCCCCcEEEccCCcCCccCCccc--cCCCCCCEEEeecccCCCCCC----cc
Q 037720 106 KLPHLSSLTLTDWEGISGE-IPR--CSTLLPFLRILDLTGNKISGEIPRHI--GKLHRLSVLNIADNYVSGPIP----GS 176 (369)
Q Consensus 106 ~l~~L~~L~L~~~~~l~~~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~ 176 (369)
+...++.+.+.+ ..++.. +.. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..
T Consensus 62 ~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGA-AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECS-CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeC-CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 345678888885 344321 111 11234669999999999999998888 899999999999999997555 34
Q ss_pred ccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccccc--C--CccccCCCCCCEEEcccCCCcccccc----c
Q 037720 177 IGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGT--I--PSSISRVYRLTDLDLSTNQISGPIPA----S 248 (369)
Q Consensus 177 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~ls~n~l~~~~~~----~ 248 (369)
+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 56789999999999999988889999999999999999997642 2 2334788999999999999973 332 3
Q ss_pred cCCCCCCcEEeccCCcccccCCcccCc----CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCC
Q 037720 249 LGKMPDLSTLNLDFNRFSGVIPASLLT----SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTS 324 (369)
Q Consensus 249 l~~l~~L~~L~L~~n~l~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 324 (369)
++.+++|++|++++|.+++..|..+.. ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence 578899999999999999887765544 59999999999999 6777664 7999999999999964 33 67889
Q ss_pred CcCEEEcccCcCce
Q 037720 325 YIGYLDLSHNNLCG 338 (369)
Q Consensus 325 ~L~~L~ls~N~l~g 338 (369)
+|++|++++|+++.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999999974
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-26 Score=218.11 Aligned_cols=242 Identities=19% Similarity=0.278 Sum_probs=191.2
Q ss_pred ecCccccCCCCCCEEecCCCCCCccc----CCcCCCCCCCCcEEEccCC---cCCccCCccc-------cCCCCCCEEEe
Q 037720 99 FISPAVCKLPHLSSLTLTDWEGISGE----IPRCSTLLPFLRILDLTGN---KISGEIPRHI-------GKLHRLSVLNI 164 (369)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~~~~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~~L~L 164 (369)
.++..+..+++|++|++++ +.+.+. ++..+..+++|++|++++| .+++.+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3566778889999999996 666654 4455788999999999986 4445556554 78899999999
Q ss_pred ecccCCC----CCCccccCCCCCcEEEeecccccCCCCcc----cCCC---------CCCcEEEccCCccc-ccCC---c
Q 037720 165 ADNYVSG----PIPGSIGNLSSLMHLDVRNNRISGPIPGC----FGRL---------HMLSRALLSGNQIS-GTIP---S 223 (369)
Q Consensus 165 ~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~ 223 (369)
++|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|+++ +.++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999986 36667888999999999999986443333 3334 89999999999987 3444 4
Q ss_pred cccCCCCCCEEEcccCCCcc-----ccccccCCCCCCcEEeccCCccc----ccCCcccCc-CCCCEEEccCCcCCcc--
Q 037720 224 SISRVYRLTDLDLSTNQISG-----PIPASLGKMPDLSTLNLDFNRFS----GVIPASLLT-SGVNNLNLSKNSLEGK-- 291 (369)
Q Consensus 224 ~l~~l~~L~~L~ls~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~-~~L~~L~L~~n~l~~~-- 291 (369)
.+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ +.+|..+.. ++|++|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 67788999999999999872 34447888999999999999986 445555544 8899999999999865
Q ss_pred --CCcCc--CCCCCCCEEEccCCCCCC----CCcccC-cCCCCcCEEEcccCcCceeCC
Q 037720 292 --IPDAF--GPKSYFMVLDLSYNKLSG----PIPRTL-SGTSYIGYLDLSHNNLCGKIP 341 (369)
Q Consensus 292 --~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~ls~N~l~g~ip 341 (369)
++..+ ..+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45566 348999999999999997 477777 568999999999999987654
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2e-27 Score=228.23 Aligned_cols=274 Identities=17% Similarity=0.190 Sum_probs=174.0
Q ss_pred cEEEEEcCCCCCChhhhhccCCCccee----ecCccccCCCCCCEEecCCCCCCcccCCcC-----CCCCCCCcEEEccC
Q 037720 72 QVAEITLRGKSEDPIFQRAHRTGYMTG----FISPAVCKLPHLSSLTLTDWEGISGEIPRC-----STLLPFLRILDLTG 142 (369)
Q Consensus 72 ~v~~L~L~~~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-----~~~l~~L~~L~L~~ 142 (369)
+++.|++++ +.+.. .++..+.++++|++|++++ +.+.+..+.. ....++|++|++++
T Consensus 86 ~L~~L~L~~-------------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 86 KIQKLSLQN-------------CCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp CCCEEECTT-------------SCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ceeEEEccC-------------CCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence 577777777 66653 5677788888888888885 5565432221 22355788888888
Q ss_pred CcCCcc----CCccccCCCCCCEEEeecccCCCCCCcccc-----CCCCCcEEEeecccccCC----CCcccCCCCCCcE
Q 037720 143 NKISGE----IPRHIGKLHRLSVLNIADNYVSGPIPGSIG-----NLSSLMHLDVRNNRISGP----IPGCFGRLHMLSR 209 (369)
Q Consensus 143 n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~ 209 (369)
|.+++. ++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 887753 345566678888888888877643333332 245778888888877653 3555666777888
Q ss_pred EEccCCcccccC-----CccccCCCCCCEEEcccCCCccc----cccccCCCCCCcEEeccCCcccccCCcccCc-----
Q 037720 210 ALLSGNQISGTI-----PSSISRVYRLTDLDLSTNQISGP----IPASLGKMPDLSTLNLDFNRFSGVIPASLLT----- 275 (369)
Q Consensus 210 L~l~~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~----- 275 (369)
|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 888887765432 12223567788888888777643 4556666777777888777776443322221
Q ss_pred -CCCCEEEccCCcCCcc----CCcCcCCCCCCCEEEccCCCCCCCCcccCcC-----CCCcCEEEcccCcCce----eCC
Q 037720 276 -SGVNNLNLSKNSLEGK----IPDAFGPKSYFMVLDLSYNKLSGPIPRTLSG-----TSYIGYLDLSHNNLCG----KIP 341 (369)
Q Consensus 276 -~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~ls~N~l~g----~ip 341 (369)
++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 4677777777777654 3445556677777777777776554443322 5567777777777764 444
Q ss_pred CC-CCCCCCCcccccCCCC
Q 037720 342 AG-SPFDHLDASSFESNKC 359 (369)
Q Consensus 342 ~~-~~~~~l~~l~~~~n~~ 359 (369)
.. ...++|+.+++++|+.
T Consensus 392 ~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHCCCCCEEECCSSSC
T ss_pred HHHHhCCCccEEECCCCCC
Confidence 32 3356666777776653
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=6.8e-26 Score=210.95 Aligned_cols=245 Identities=16% Similarity=0.171 Sum_probs=192.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCC----cCCCCCC-CCcEEEccCCcCCccCCccccCC-----CCCCEEE
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIP----RCSTLLP-FLRILDLTGNKISGEIPRHIGKL-----HRLSVLN 163 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~ 163 (369)
+.++|.+|..+...++|++|++++ +.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 778888888888888899999996 67776555 6677788 89999999999997777766664 9999999
Q ss_pred eecccCCCCCCcc----ccCC-CCCcEEEeecccccCCCCccc----CC-CCCCcEEEccCCcccccC----CccccCCC
Q 037720 164 IADNYVSGPIPGS----IGNL-SSLMHLDVRNNRISGPIPGCF----GR-LHMLSRALLSGNQISGTI----PSSISRVY 229 (369)
Q Consensus 164 L~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~~l~~l~ 229 (369)
+++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..+...+
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 9999998665554 4444 899999999999987655443 34 369999999999998543 34445555
Q ss_pred -CCCEEEcccCCCccccccc----cCCC-CCCcEEeccCCcccccC----CcccCc--CCCCEEEccCCcCCccCC----
Q 037720 230 -RLTDLDLSTNQISGPIPAS----LGKM-PDLSTLNLDFNRFSGVI----PASLLT--SGVNNLNLSKNSLEGKIP---- 293 (369)
Q Consensus 230 -~L~~L~ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~----~~~~~~--~~L~~L~L~~n~l~~~~~---- 293 (369)
+|++|++++|++++..+.. +..+ ++|++|++++|.+++.. +..+.. ++|++|++++|.+++..+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 9999999999998666543 4455 59999999999998643 223322 589999999999987544
Q ss_pred cCcCCCCCCCEEEccCCCCCCC-------CcccCcCCCCcCEEEcccCcCcee
Q 037720 294 DAFGPKSYFMVLDLSYNKLSGP-------IPRTLSGTSYIGYLDLSHNNLCGK 339 (369)
Q Consensus 294 ~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~ls~N~l~g~ 339 (369)
..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4457789999999999995543 345677889999999999999765
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.5e-23 Score=181.45 Aligned_cols=179 Identities=19% Similarity=0.266 Sum_probs=142.2
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEcc
Q 037720 134 FLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLS 213 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~ 213 (369)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678888888888 5666554 588899999998887777788888889999998888887777778888888888888
Q ss_pred CCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccC
Q 037720 214 GNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKI 292 (369)
Q Consensus 214 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~ 292 (369)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888666677788888888888888888666666778888888888888887665555544 77888888888887666
Q ss_pred CcCcCCCCCCCEEEccCCCCCCC
Q 037720 293 PDAFGPKSYFMVLDLSYNKLSGP 315 (369)
Q Consensus 293 ~~~l~~l~~L~~L~Ls~n~l~~~ 315 (369)
+..+..+++|+.|++++|.+++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777777888888888877754
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.3e-23 Score=187.70 Aligned_cols=194 Identities=23% Similarity=0.370 Sum_probs=123.7
Q ss_pred cCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCc
Q 037720 105 CKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLM 184 (369)
Q Consensus 105 ~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (369)
.++++|++|++++ +.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|+
T Consensus 38 ~~l~~L~~L~l~~-~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFG-TGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTT-SCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeC-CCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4566777777775 4444 233 46667777777777777774333 77777777777777777642 3567777777
Q ss_pred EEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCc
Q 037720 185 HLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNR 264 (369)
Q Consensus 185 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 264 (369)
+|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 777777777643 2 26677777777777777764322 6667777777777777764322 6667777777777776
Q ss_pred ccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCC
Q 037720 265 FSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314 (369)
Q Consensus 265 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 314 (369)
+++..+ ....++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 664432 1112666666666666664332 5666666666666666653
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.6e-22 Score=187.33 Aligned_cols=228 Identities=20% Similarity=0.130 Sum_probs=140.4
Q ss_pred cCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCC-ccccCCCCCcE-EEeecccccCCCCccc
Q 037720 124 EIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIP-GSIGNLSSLMH-LDVRNNRISGPIPGCF 201 (369)
Q Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~Ls~n~l~~~~~~~l 201 (369)
.+|..+ .+++++|+|++|.|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|+++...+..|
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 455444 3467777777777774444567777777777777777655444 35666666554 4455667766666677
Q ss_pred CCCCCCcEEEccCCcccccCCccccCCCCCCEEEccc-CCCccccccccCCCC-CCcEEeccCCcccccCCcccCcCCCC
Q 037720 202 GRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLST-NQISGPIPASLGKMP-DLSTLNLDFNRFSGVIPASLLTSGVN 279 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~L~ 279 (369)
..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++...+..+...+++
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence 7777777777777777655555555556666777654 445444344455543 56777777777775444444446677
Q ss_pred EEEccC-CcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCCCCCCCCCcccccC
Q 037720 280 NLNLSK-NSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAGSPFDHLDASSFES 356 (369)
Q Consensus 280 ~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~l~~~~ 356 (369)
++++.+ |.++...+..|..+++|++|++++|+|+...+.. +.+|+.|.+.++.-...+|....+++|+.+++.+
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 777764 4455333345677777777777777777443333 3445555555554344667666677777766653
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.5e-22 Score=197.40 Aligned_cols=226 Identities=23% Similarity=0.329 Sum_probs=161.0
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP 150 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (369)
.+++.|++++ |.+.. +|. .+++|++|++++ |.++ .+|. .+++|++|++++|.+++ +|
T Consensus 61 ~~L~~L~L~~-------------N~l~~-lp~---~l~~L~~L~Ls~-N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~ 117 (622)
T 3g06_A 61 AHITTLVIPD-------------NNLTS-LPA---LPPELRTLEVSG-NQLT-SLPV---LPPGLLELSIFSNPLTH-LP 117 (622)
T ss_dssp TTCSEEEECS-------------CCCSC-CCC---CCTTCCEEEECS-CCCS-CCCC---CCTTCCEEEECSCCCCC-CC
T ss_pred CCCcEEEecC-------------CCCCC-CCC---cCCCCCEEEcCC-CcCC-cCCC---CCCCCCEEECcCCcCCC-CC
Confidence 3677888887 55553 333 467777777775 4454 3444 45677777777777763 33
Q ss_pred ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCC--CCccc--------------CCCCCCcEEEccC
Q 037720 151 RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGP--IPGCF--------------GRLHMLSRALLSG 214 (369)
Q Consensus 151 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l--------------~~l~~L~~L~l~~ 214 (369)
. .+++|++|++++|+++. +|.. +++|++|++++|.+++. .+..+ ..+++|+.|++++
T Consensus 118 ~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSD 190 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred C---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCC
Confidence 3 44566666666666653 3332 25555666665555531 11112 2337899999999
Q ss_pred CcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCc
Q 037720 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPD 294 (369)
Q Consensus 215 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 294 (369)
|.+++ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|.+++ +|. ..++|++|++++|.++ .+|.
T Consensus 191 N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp~--~l~~L~~L~Ls~N~L~-~lp~ 258 (622)
T 3g06_A 191 NQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LPV--LPSELKELMVSGNRLT-SLPM 258 (622)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC
T ss_pred CCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CCC--CCCcCcEEECCCCCCC-cCCc
Confidence 99884 4543 478999999999998 4453 35889999999999996 442 2279999999999999 5665
Q ss_pred CcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 295 AFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 295 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
.+++|+.|++++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 259 ---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 6788999999999999 7788999999999999999999987765
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.2e-25 Score=204.97 Aligned_cols=249 Identities=18% Similarity=0.168 Sum_probs=195.3
Q ss_pred EEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC----ccccCCC-CCCEEEeecccCCCCCCccccCC-----C
Q 037720 112 SLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP----RHIGKLH-RLSVLNIADNYVSGPIPGSIGNL-----S 181 (369)
Q Consensus 112 ~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~ 181 (369)
.+.++ .+.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|+|++|.+++..+..+..+ +
T Consensus 2 ~~~ls-~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLT-LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECC-CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccc-cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677 478888888888888889999999999997666 6788898 99999999999997766666664 8
Q ss_pred CCcEEEeecccccCCCCccc----CCC-CCCcEEEccCCcccccCCccc----cC-CCCCCEEEcccCCCccc----ccc
Q 037720 182 SLMHLDVRNNRISGPIPGCF----GRL-HMLSRALLSGNQISGTIPSSI----SR-VYRLTDLDLSTNQISGP----IPA 247 (369)
Q Consensus 182 ~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~ls~n~l~~~----~~~ 247 (369)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++. ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999987666544 344 899999999999987665544 34 36999999999999853 344
Q ss_pred ccCCCC-CCcEEeccCCcccccCCcccCc------CCCCEEEccCCcCCcc----CCcCcCC-CCCCCEEEccCCCCCCC
Q 037720 248 SLGKMP-DLSTLNLDFNRFSGVIPASLLT------SGVNNLNLSKNSLEGK----IPDAFGP-KSYFMVLDLSYNKLSGP 315 (369)
Q Consensus 248 ~l~~l~-~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~ 315 (369)
.+...+ +|++|++++|.+++..+..+.. ++|++|++++|.+++. ++..+.. .++|++|++++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 455665 9999999999998776644332 4899999999999863 3444544 46999999999999976
Q ss_pred Cc----ccCcCCCCcCEEEcccCcCceeC-------C-CCCCCCCCCcccccCCCCcc
Q 037720 316 IP----RTLSGTSYIGYLDLSHNNLCGKI-------P-AGSPFDHLDASSFESNKCLC 361 (369)
Q Consensus 316 ~~----~~l~~l~~L~~L~ls~N~l~g~i-------p-~~~~~~~l~~l~~~~n~~~c 361 (369)
.+ ..+..+++|++|++++|.+.+.. + .....+.|+.+++++|+.-.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 55 44577899999999999954322 1 12456678889999997543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=4.7e-25 Score=207.06 Aligned_cols=250 Identities=21% Similarity=0.267 Sum_probs=196.7
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeec----CccccCCCCCCEEecCCC--CCCcccCCcCC-------CCCCCCcE
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFI----SPAVCKLPHLSSLTLTDW--EGISGEIPRCS-------TLLPFLRI 137 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~L~~L~L~~~--~~l~~~~~~~~-------~~l~~L~~ 137 (369)
.+++.|+|++ +.+.+.. +..+.++++|++|+|+++ +.+.+.+|..+ ..+++|++
T Consensus 32 ~~L~~L~L~~-------------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 32 DSVKEIVLSG-------------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp SCCCEEECTT-------------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred CCccEEECCC-------------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 3688999998 7777653 345779999999999964 45566666555 78999999
Q ss_pred EEccCCcCCc----cCCccccCCCCCCEEEeecccCCCCCCcc----ccCC---------CCCcEEEeeccccc-CCCC-
Q 037720 138 LDLTGNKISG----EIPRHIGKLHRLSVLNIADNYVSGPIPGS----IGNL---------SSLMHLDVRNNRIS-GPIP- 198 (369)
Q Consensus 138 L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~Ls~n~l~-~~~~- 198 (369)
|++++|.+++ .++..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|.++ +.++
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9999999997 47778899999999999999987433333 3333 89999999999997 3344
Q ss_pred --cccCCCCCCcEEEccCCcccc-----cCCccccCCCCCCEEEcccCCCc----cccccccCCCCCCcEEeccCCcccc
Q 037720 199 --GCFGRLHMLSRALLSGNQISG-----TIPSSISRVYRLTDLDLSTNQIS----GPIPASLGKMPDLSTLNLDFNRFSG 267 (369)
Q Consensus 199 --~~l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~ls~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~ 267 (369)
..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 467788999999999999873 23447889999999999999996 5678889999999999999999986
Q ss_pred c----CCccc--C-cCCCCEEEccCCcCCc----cCCcCc-CCCCCCCEEEccCCCCCCCCc--ccCc-CCCCcCEEEcc
Q 037720 268 V----IPASL--L-TSGVNNLNLSKNSLEG----KIPDAF-GPKSYFMVLDLSYNKLSGPIP--RTLS-GTSYIGYLDLS 332 (369)
Q Consensus 268 ~----~~~~~--~-~~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~Ls~n~l~~~~~--~~l~-~l~~L~~L~ls 332 (369)
. ++..+ . .++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+ ..+. .+++++.+++.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 5 33433 2 3889999999999997 477777 668999999999999998764 3332 24444444444
Q ss_pred c
Q 037720 333 H 333 (369)
Q Consensus 333 ~ 333 (369)
.
T Consensus 339 ~ 339 (386)
T 2ca6_A 339 E 339 (386)
T ss_dssp C
T ss_pred h
Confidence 3
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=8.1e-26 Score=216.95 Aligned_cols=273 Identities=19% Similarity=0.159 Sum_probs=207.7
Q ss_pred CcEEEEEcCCCCCChhhhhccCCCcceeecCccc-----cCCCCCCEEecCCCCCCccc----CCcCCCCCCCCcEEEcc
Q 037720 71 HQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAV-----CKLPHLSSLTLTDWEGISGE----IPRCSTLLPFLRILDLT 141 (369)
Q Consensus 71 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~l~~L~~L~L~~~~~l~~~----~~~~~~~l~~L~~L~L~ 141 (369)
.+++.|++++ +.+.+..+..+ ...++|++|++++ +.+++. ++..+..+++|++|+++
T Consensus 113 ~~L~~L~Ls~-------------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 113 PTLQELHLSD-------------NLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp TTCCEEECCS-------------SBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred CceeEEECCC-------------CcCchHHHHHHHHHHhcCCCcceEEECCC-CCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 4788999998 66655444333 2367899999996 677653 35556678999999999
Q ss_pred CCcCCccCCcccc-----CCCCCCEEEeecccCCCC----CCccccCCCCCcEEEeecccccCCC-----CcccCCCCCC
Q 037720 142 GNKISGEIPRHIG-----KLHRLSVLNIADNYVSGP----IPGSIGNLSSLMHLDVRNNRISGPI-----PGCFGRLHML 207 (369)
Q Consensus 142 ~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L 207 (369)
+|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 9999865444443 367999999999999864 4667778899999999999987532 2233468999
Q ss_pred cEEEccCCccccc----CCccccCCCCCCEEEcccCCCccccccccC-----CCCCCcEEeccCCcccccC----CcccC
Q 037720 208 SRALLSGNQISGT----IPSSISRVYRLTDLDLSTNQISGPIPASLG-----KMPDLSTLNLDFNRFSGVI----PASLL 274 (369)
Q Consensus 208 ~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~~ 274 (369)
++|++++|.++.. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 9999999999854 677788899999999999999754333332 3379999999999998653 23332
Q ss_pred c-CCCCEEEccCCcCCccCCcCcCC-----CCCCCEEEccCCCCCC----CCcccCcCCCCcCEEEcccCcCcee-----
Q 037720 275 T-SGVNNLNLSKNSLEGKIPDAFGP-----KSYFMVLDLSYNKLSG----PIPRTLSGTSYIGYLDLSHNNLCGK----- 339 (369)
Q Consensus 275 ~-~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~N~l~g~----- 339 (369)
. ++|++|++++|.+++..+..+.. .++|++|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence 3 89999999999998755444432 6799999999999997 7888888999999999999999864
Q ss_pred ---CCCCCCCCCCCcccccCCCC
Q 037720 340 ---IPAGSPFDHLDASSFESNKC 359 (369)
Q Consensus 340 ---ip~~~~~~~l~~l~~~~n~~ 359 (369)
+|. ....++.+.+.++.+
T Consensus 419 ~~~l~~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 419 VESVRQ--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHTS--TTCCCCEEECTTCCC
T ss_pred HHHhcc--CCcchhheeeccccc
Confidence 443 234566666655544
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.1e-22 Score=183.16 Aligned_cols=193 Identities=22% Similarity=0.332 Sum_probs=126.5
Q ss_pred CCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcE
Q 037720 130 TLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 209 (369)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345667777777777763 33 466677777777777777643 33 66777777777777776642 25667777777
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcC
Q 037720 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSL 288 (369)
Q Consensus 210 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 288 (369)
|++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +.. ++|++|++++|.+
T Consensus 112 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 7777777764 332 6677777777777777764432 6667777777777777765333 333 6777777777777
Q ss_pred CccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCce
Q 037720 289 EGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 289 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 64332 6667777777777777765442 6667777777777777764
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=5.3e-24 Score=195.87 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=193.2
Q ss_pred CCCEEecCCCCCCcccCCcCCCCC--CCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCC-CCccccCCCCCcE
Q 037720 109 HLSSLTLTDWEGISGEIPRCSTLL--PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGP-IPGSIGNLSSLMH 185 (369)
Q Consensus 109 ~L~~L~L~~~~~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 185 (369)
.++.+++++ +.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 478999985 4444 3334455 7899999999999976655 56899999999999998855 7778889999999
Q ss_pred EEeecccccCCCCcccCCCCCCcEEEccCC-cccc-cCCccccCCCCCCEEEcccC-CCccc-cccccCCCC-CCcEEec
Q 037720 186 LDVRNNRISGPIPGCFGRLHMLSRALLSGN-QISG-TIPSSISRVYRLTDLDLSTN-QISGP-IPASLGKMP-DLSTLNL 260 (369)
Q Consensus 186 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~-~~~~~l~~l~~L~~L~ls~n-~l~~~-~~~~l~~l~-~L~~L~L 260 (369)
|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998888888999999999999999 6765 36677889999999999999 88854 577788899 9999999
Q ss_pred cCC--ccc-ccCCcccCc-CCCCEEEccCCc-CCccCCcCcCCCCCCCEEEccCCC-CCCCCcccCcCCCCcCEEEcccC
Q 037720 261 DFN--RFS-GVIPASLLT-SGVNNLNLSKNS-LEGKIPDAFGPKSYFMVLDLSYNK-LSGPIPRTLSGTSYIGYLDLSHN 334 (369)
Q Consensus 261 ~~n--~l~-~~~~~~~~~-~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N 334 (369)
++| .++ +.++..+.. ++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 454 334444333 899999999999 777778889999999999999995 44444446888999999999999
Q ss_pred cCceeCCCCC--CC-CCCCcccccCCCC
Q 037720 335 NLCGKIPAGS--PF-DHLDASSFESNKC 359 (369)
Q Consensus 335 ~l~g~ip~~~--~~-~~l~~l~~~~n~~ 359 (369)
++... .+ ..++.+++++|..
T Consensus 283 -----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 283 -----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp -----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred -----cCHHHHHHHHhhCcceEEecccC
Confidence 44421 12 3466777776654
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.7e-21 Score=166.78 Aligned_cols=162 Identities=22% Similarity=0.283 Sum_probs=99.7
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEc
Q 037720 133 PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 212 (369)
++|++|++++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46666777777666555555666677777777777666444445566666777777766666555555666666666666
Q ss_pred cCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccC
Q 037720 213 SGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKI 292 (369)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 292 (369)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. +.+++|+++.|+++|.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~------~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC------PGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT------TTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC------CCHHHHHHHHHhCCcee
Confidence 666666554555666666666666666666555555666666666666666554322 24555555555555555
Q ss_pred CcCcCCCC
Q 037720 293 PDAFGPKS 300 (369)
Q Consensus 293 ~~~l~~l~ 300 (369)
|..++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 55555443
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.2e-21 Score=189.47 Aligned_cols=188 Identities=27% Similarity=0.362 Sum_probs=139.4
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLD 187 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (369)
.+|++|++++ +.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+
T Consensus 59 ~~L~~L~Ls~-n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNR-LNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCS-SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCC-CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 3789999985 66765 77655 378999999999988 566 457889999999999886 666 654 889999
Q ss_pred eecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccc
Q 037720 188 VRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSG 267 (369)
Q Consensus 188 Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 267 (369)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 99988886 555 57888888888888875 555 56788888888888875 555 54 78888888888887
Q ss_pred cCCcccCcCCC-------CEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCC
Q 037720 268 VIPASLLTSGV-------NNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGT 323 (369)
Q Consensus 268 ~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 323 (369)
.+|. +.. +| ++|++++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 194 ~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPA-VPV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhh-HHH-hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4444 332 56 77777777777 466666667777777777777777776665543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.9e-21 Score=166.52 Aligned_cols=174 Identities=22% Similarity=0.260 Sum_probs=98.4
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCC
Q 037720 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 215 (369)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45566666665 344333 346677777777766544445666666666666666666544445556666666666666
Q ss_pred cccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcC
Q 037720 216 QISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDA 295 (369)
Q Consensus 216 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 295 (369)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| ++++..+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-----------------------~l~~~~~~~ 143 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-----------------------QLKSVPDGV 143 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-----------------------CCSCCCTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-----------------------ccceeCHHH
Confidence 655444444555555555555555555444444444555555555444 444433444
Q ss_pred cCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 296 FGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 296 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+|.
T Consensus 144 ~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence 5555666666666665542 334566666666666666665
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.3e-20 Score=172.72 Aligned_cols=220 Identities=17% Similarity=0.037 Sum_probs=152.3
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCC-ccccCCCCCCE-EEeecccCCCCCCccccCCCCCcE
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIP-RHIGKLHRLSV-LNIADNYVSGPIPGSIGNLSSLMH 185 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~ 185 (369)
+++++|+|++ |.++...+..|.++++|++|+|++|.+.+.+| .+|.+++++++ +.+..|+++...|..|..+++|++
T Consensus 30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 5788888885 66764444567888888888888888765554 45778888765 556678888666777888888888
Q ss_pred EEeecccccCCCCcccCCCCCCcEEEccC-CcccccCCccccCCC-CCCEEEcccCCCccccccccCCCCCCcEEeccC-
Q 037720 186 LDVRNNRISGPIPGCFGRLHMLSRALLSG-NQISGTIPSSISRVY-RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF- 262 (369)
Q Consensus 186 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~- 262 (369)
|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|+++. ++.......+|+++++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence 88888888866666666777778888865 445544444555553 57888888888874 444444566788888875
Q ss_pred CcccccCCc-ccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccC
Q 037720 263 NRFSGVIPA-SLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334 (369)
Q Consensus 263 n~l~~~~~~-~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 334 (369)
|.++ .+|. .+.. ++|++|++++|+++...+.. +.+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 188 n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred Cccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4444 4544 3444 88888888888888433333 4456666665554333555 4778888888888654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=6.8e-21 Score=186.08 Aligned_cols=195 Identities=23% Similarity=0.367 Sum_probs=146.0
Q ss_pred Ccce-EeCCCCCcEEEEEcCCCCCChhhhhccCCCcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEE
Q 037720 61 WYGV-SCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILD 139 (369)
Q Consensus 61 w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~ 139 (369)
|.|+ .|.. .+++.|++++ +.+.+ +|..+ +++|++|++++ |.++ .+| ..+++|++|+
T Consensus 50 ~~~l~~C~~--~~L~~L~Ls~-------------n~L~~-lp~~l--~~~L~~L~Ls~-N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 50 VSLLKECLI--NQFSELQLNR-------------LNLSS-LPDNL--PPQITVLEITQ-NALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHHHHHHHH--TTCSEEECCS-------------SCCSC-CCSCC--CTTCSEEECCS-SCCS-CCC---CCCTTCCEEE
T ss_pred hhhcccccc--CCccEEEeCC-------------CCCCc-cCHhH--cCCCCEEECcC-CCCc-ccc---cccCCCCEEE
Confidence 8888 6753 4788888888 67766 66655 37888888885 6666 566 4578888888
Q ss_pred ccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccc
Q 037720 140 LTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISG 219 (369)
Q Consensus 140 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 219 (369)
+++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 88888886 666 555 88888888888885 565 57888888888888885 554 56788888888888885
Q ss_pred cCCccccCCCCCCEEEcccCCCccccccccCCCCCC-------cEEeccCCcccccCCcccCc-CCCCEEEccCCcCCcc
Q 037720 220 TIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDL-------STLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGK 291 (369)
Q Consensus 220 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 291 (369)
+|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++. +|..+.. ++|++|++++|.+++.
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 666 55 78888888888888 5555 543 66 888888888884 5555544 8888888888888887
Q ss_pred CCcCcCCC
Q 037720 292 IPDAFGPK 299 (369)
Q Consensus 292 ~~~~l~~l 299 (369)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 77666543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=2e-20 Score=162.65 Aligned_cols=134 Identities=25% Similarity=0.327 Sum_probs=66.9
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEc
Q 037720 133 PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 212 (369)
++|++|++++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 34444444444444444444444455555555555444333333444555555555555554444444445555555555
Q ss_pred cCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccc
Q 037720 213 SGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSG 267 (369)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 267 (369)
++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555554 444455555555555555555554444445555555555555555543
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=1.5e-22 Score=204.16 Aligned_cols=203 Identities=19% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCcceEeCCCCCcEEEEEcCCCCCChhhhhccCCCcceeecCccc
Q 037720 26 CPPSDRAALLAFKSALHEPYIGIFNSWT-GNDCCHNWYGVSCDPETHQVAEITLRGKSEDPIFQRAHRTGYMTGFISPAV 104 (369)
Q Consensus 26 ~~~~~~~~ll~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (369)
....+++++++++.+.....+.....|. .......|.++.+.. .++++++|.+ +.+.. .+..+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~-------------n~~~~-~~~~~ 192 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFA-------------NGKDE-ANQAL 192 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeC-------------CCCCc-chhhH
Confidence 4556789999999888655555556775 333333598888864 5788898877 44433 23333
Q ss_pred cCCCCCCEEecCC----CCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCC
Q 037720 105 CKLPHLSSLTLTD----WEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNL 180 (369)
Q Consensus 105 ~~l~~L~~L~L~~----~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (369)
.....|+.+.+.+ ++.+. ..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred hhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 2233333333221 01111 23444555555555666555555 44544445555555555555555 455555555
Q ss_pred CCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcccccccc
Q 037720 181 SSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASL 249 (369)
Q Consensus 181 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l 249 (369)
++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 55555555555555 44555555555555555555554 445555555555555555555555544444
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8.5e-20 Score=157.68 Aligned_cols=152 Identities=25% Similarity=0.258 Sum_probs=111.3
Q ss_pred cEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCC
Q 037720 184 MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFN 263 (369)
Q Consensus 184 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n 263 (369)
+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777776 4455443 57788888888887666667777888888888888887777777888888888888888
Q ss_pred cccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCce
Q 037720 264 RFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 264 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
.+++..+..+.. ++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 877554444443 777777777777777667777777777777777777776666667777777777777777653
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=160.70 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=97.5
Q ss_pred CEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCC-cccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEccc
Q 037720 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIP-GCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLST 238 (369)
Q Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 238 (369)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47778887777 4565443 346777777777775543 3466777777777777777766556677777777777777
Q ss_pred CCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCC
Q 037720 239 NQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSG 314 (369)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 314 (369)
|.+++..+..+..+++|++|++++|.+++..|..+.. ++|++|++++|++++..|..|..+++|+.|++++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7776666666666666666666666666555554444 556666666666655555555555566666666665553
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.7e-20 Score=171.40 Aligned_cols=178 Identities=24% Similarity=0.219 Sum_probs=99.3
Q ss_pred CEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccC-CCCCCcEEEccCCcccccCCccccCCCCCCEEEccc
Q 037720 160 SVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFG-RLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLST 238 (369)
Q Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 238 (369)
+.++++++.++ .+|..+. ..+++|++++|.+++..+..+. .+++|++|++++|++++..+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777766 4555443 3466677777766655555555 666666666666666655555566666666666666
Q ss_pred CCCccccccccCCCCCCcEEeccCCcccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcc
Q 037720 239 NQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPR 318 (369)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 318 (369)
|.+++..+..|..+++|++|+|++|.++ +..+..|..+++|+.|+|++|+|++..+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIV-----------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCccc-----------------------EECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 6665444445555555555555555554 44444555555666666666666543333
Q ss_pred cC---cCCCCcCEEEcccCcCceeCCCC--CCCCC--CCcccccCCCCccCCC
Q 037720 319 TL---SGTSYIGYLDLSHNNLCGKIPAG--SPFDH--LDASSFESNKCLCGKP 364 (369)
Q Consensus 319 ~l---~~l~~L~~L~ls~N~l~g~ip~~--~~~~~--l~~l~~~~n~~~c~~~ 364 (369)
.+ ..+++|++|+|++|+|+ .+|.. ..++. ++.+++.+||+.|+|.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp GTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred HhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 33 34566666666666665 33321 11222 2456667777766653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.3e-19 Score=163.35 Aligned_cols=172 Identities=24% Similarity=0.302 Sum_probs=123.9
Q ss_pred CCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcE
Q 037720 130 TLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSR 209 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 209 (369)
..+++|++|++++|.++.. + .+..+++|++|++++|.+++.. . +.++++|++|++++|.+++ + ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 4577888888888888743 3 4777888888888888888543 3 7888888888888888874 2 34777888888
Q ss_pred EEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcC
Q 037720 210 ALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSL 288 (369)
Q Consensus 210 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l 288 (369)
|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +.. ++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888887743 4567777888888888877754 466777777777777777775544 333 6777777777777
Q ss_pred CccCCcCcCCCCCCCEEEccCCCCCCC
Q 037720 289 EGKIPDAFGPKSYFMVLDLSYNKLSGP 315 (369)
Q Consensus 289 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 315 (369)
++ ++ .+..+++|+.|++++|+++..
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred CC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 64 33 366777777777777776643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=8.7e-20 Score=164.45 Aligned_cols=172 Identities=27% Similarity=0.378 Sum_probs=136.7
Q ss_pred ccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCC
Q 037720 104 VCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSL 183 (369)
Q Consensus 104 l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (369)
+.++++|++|++++ +.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccC-CCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 35678899999985 55543 33 47778899999999999885444 8889999999999998884 33 48888999
Q ss_pred cEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCC
Q 037720 184 MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFN 263 (369)
Q Consensus 184 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n 263 (369)
++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999988753 4678888999999999988854 568888999999999999886544 888899999999999
Q ss_pred cccccCCcccCc-CCCCEEEccCCcCCc
Q 037720 264 RFSGVIPASLLT-SGVNNLNLSKNSLEG 290 (369)
Q Consensus 264 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 290 (369)
.+++. +. +.. ++|+.|++++|.++.
T Consensus 189 ~i~~l-~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-GG-GTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-hh-hccCCCCCEEECcCCcccC
Confidence 88854 33 333 889999999998875
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.8e-19 Score=153.54 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=78.7
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEc
Q 037720 133 PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 212 (369)
++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45555666666655444445555666666666666665555555556666666666666665444444555666666666
Q ss_pred cCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccc
Q 037720 213 SGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666665555555666666666666666666555555666666666666666554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=168.21 Aligned_cols=176 Identities=20% Similarity=0.134 Sum_probs=146.9
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCcccc-CCCCCcEEEeecccccCCCCcccCCCCCCcEEEccC
Q 037720 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIG-NLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 214 (369)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68999999998 5776654 4689999999999977777777 899999999999999988888999999999999999
Q ss_pred CcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCccc---C-cCCCCEEEccCCcCCc
Q 037720 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASL---L-TSGVNNLNLSKNSLEG 290 (369)
Q Consensus 215 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~-~~~L~~L~L~~n~l~~ 290 (369)
|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+ . .++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99997777889999999999999999998888899999999999999999986544433 1 2778888888888875
Q ss_pred cCCcCcCCCCC--CCEEEccCCCCCC
Q 037720 291 KIPDAFGPKSY--FMVLDLSYNKLSG 314 (369)
Q Consensus 291 ~~~~~l~~l~~--L~~L~Ls~n~l~~ 314 (369)
..+..+..++. ++.|++++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 54455666665 3677787777763
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=153.12 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=93.3
Q ss_pred CCcEEEccCCcCCccCC-ccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEc
Q 037720 134 FLRILDLTGNKISGEIP-RHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALL 212 (369)
Q Consensus 134 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 212 (369)
.+++|++++|.+++..+ ..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45677777777765533 34666777777777777777555556777777777777777776666666777777777777
Q ss_pred cCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccC
Q 037720 213 SGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVI 269 (369)
Q Consensus 213 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 269 (369)
++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777777666667777777777777777777666667777777777777777766443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.3e-18 Score=151.07 Aligned_cols=153 Identities=23% Similarity=0.274 Sum_probs=105.7
Q ss_pred CCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEccc
Q 037720 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLST 238 (369)
Q Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 238 (369)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777776 5565443 6788888888888777777777777888888888777655555667777777777777
Q ss_pred CCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCC
Q 037720 239 NQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGP 315 (369)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 315 (369)
|.+++..+..+..+++|++|++++|.++ .+|..+.. ++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7777665666677777777777777776 44444433 6677777777766655555566666677777776666643
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.8e-19 Score=174.68 Aligned_cols=173 Identities=26% Similarity=0.352 Sum_probs=111.5
Q ss_pred ccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCC
Q 037720 104 VCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSL 183 (369)
Q Consensus 104 l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (369)
+..+++|+.|++++ +.+. .++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+.+ ++ .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~-n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcC-CCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 34567777777774 4443 233 46667777777777777775433 6777777777777777763 23 56777777
Q ss_pred cEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCC
Q 037720 184 MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFN 263 (369)
Q Consensus 184 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n 263 (369)
++|+|++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 7777777777642 3466677777777777776643 456667777777777777765444 666777777777777
Q ss_pred cccccCCcccCcCCCCEEEccCCcCCc
Q 037720 264 RFSGVIPASLLTSGVNNLNLSKNSLEG 290 (369)
Q Consensus 264 ~l~~~~~~~~~~~~L~~L~L~~n~l~~ 290 (369)
.+++. +.....++|+.|+|++|.+.+
T Consensus 186 ~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 66643 221122666666666666654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.8e-19 Score=176.37 Aligned_cols=176 Identities=25% Similarity=0.312 Sum_probs=140.8
Q ss_pred CCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCc
Q 037720 129 STLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLS 208 (369)
Q Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 208 (369)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 3567889999999999874 34 58889999999999999986443 8889999999999999875 3 3688889999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCc
Q 037720 209 RALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNS 287 (369)
Q Consensus 209 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~ 287 (369)
+|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +.. ++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 99999998875 3 4578888999999999988854 567888889999999988887655 333 888888888888
Q ss_pred CCccCCcCcCCCCCCCEEEccCCCCCCCCcc
Q 037720 288 LEGKIPDAFGPKSYFMVLDLSYNKLSGPIPR 318 (369)
Q Consensus 288 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 318 (369)
+++. ..+..+++|+.|+|++|.+++....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 8853 3578888888888888888765433
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.2e-18 Score=146.09 Aligned_cols=130 Identities=22% Similarity=0.311 Sum_probs=63.8
Q ss_pred CCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEE
Q 037720 131 LLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRA 210 (369)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 210 (369)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555555 333 4555555555555555443 12345555555555555555554444445555555555
Q ss_pred EccCCcccccCCccccCCCCCCEEEcccCC-CccccccccCCCCCCcEEeccCCccc
Q 037720 211 LLSGNQISGTIPSSISRVYRLTDLDLSTNQ-ISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 211 ~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 555555544444444455555555555554 32 222 3444444444444444443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.3e-18 Score=146.06 Aligned_cols=153 Identities=15% Similarity=0.257 Sum_probs=97.1
Q ss_pred cCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 037720 154 GKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTD 233 (369)
Q Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 233 (369)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55677888888888877 445 5777778888888877554 2335666777777777777776656666666777777
Q ss_pred EEcccCCCccccccccCCCCCCcEEeccCCc-ccccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCC
Q 037720 234 LDLSTNQISGPIPASLGKMPDLSTLNLDFNR-FSGVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKL 312 (369)
Q Consensus 234 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 312 (369)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------------------~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT------------------------DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC------------------------CCG-GGGGCSSCCEEECTTBCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc------------------------ccH-hhcCCCCCCEEECCCCCC
Confidence 7777777665556666666666666666665 33 222 345555666666666666
Q ss_pred CCCCcccCcCCCCcCEEEcccCcCc
Q 037720 313 SGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 313 ~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
++. + .+..+++|++|++++|++.
T Consensus 172 ~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCh-H-HhccCCCCCEEEeeCcccC
Confidence 542 2 4556666666666666654
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=9.6e-22 Score=192.74 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=93.7
Q ss_pred CCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEcc
Q 037720 230 RLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLS 308 (369)
Q Consensus 230 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 308 (369)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+.. ++|++|+|++|++++ +| .+..+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47888888888885 555 888888888888888888 66666665 888888888888885 56 78888899999999
Q ss_pred CCCCCCCC-cccCcCCCCcCEEEcccCcCceeCCCCCC----CCCCCccc
Q 037720 309 YNKLSGPI-PRTLSGTSYIGYLDLSHNNLCGKIPAGSP----FDHLDASS 353 (369)
Q Consensus 309 ~n~l~~~~-~~~l~~l~~L~~L~ls~N~l~g~ip~~~~----~~~l~~l~ 353 (369)
+|+|++.. |..+..+++|++|++++|++++..|.... +++|+.++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99988776 88888899999999999998876664322 45555543
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.3e-20 Score=186.27 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=84.7
Q ss_pred cCCCCCCEEEcccCCCccccccccCC-CCCCcEEecc----CCcccccC-----CcccC-cCCCCEEEccCCc--CCccC
Q 037720 226 SRVYRLTDLDLSTNQISGPIPASLGK-MPDLSTLNLD----FNRFSGVI-----PASLL-TSGVNNLNLSKNS--LEGKI 292 (369)
Q Consensus 226 ~~l~~L~~L~ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~-----~~~~~-~~~L~~L~L~~n~--l~~~~ 292 (369)
..+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++.. +..+. .++|++|++++|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 34566666666666665544444443 6677777774 44555421 11111 1677777776543 55443
Q ss_pred CcCcC-CCCCCCEEEccCCCCCCC-CcccCcCCCCcCEEEcccCcCcee-CCCC-CCCCCCCcccccCCC
Q 037720 293 PDAFG-PKSYFMVLDLSYNKLSGP-IPRTLSGTSYIGYLDLSHNNLCGK-IPAG-SPFDHLDASSFESNK 358 (369)
Q Consensus 293 ~~~l~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~l~g~-ip~~-~~~~~l~~l~~~~n~ 358 (369)
+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++.. ..+++|+.+++++|+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 33333 378899999999998863 445557889999999999998754 3332 357889999999887
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.9e-18 Score=145.92 Aligned_cols=179 Identities=17% Similarity=0.285 Sum_probs=129.1
Q ss_pred cEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCc-cccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC
Q 037720 184 MHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPS-SISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262 (369)
Q Consensus 184 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 262 (369)
++++++++.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68889998886 56665543 889999999998866554 478889999999999999888888888999999999999
Q ss_pred CcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCccc-CcCCCCcCEEEcccCcCceeC
Q 037720 263 NRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRT-LSGTSYIGYLDLSHNNLCGKI 340 (369)
Q Consensus 263 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~ls~N~l~g~i 340 (369)
|.+++..+..+.. ++|++|++++|++++..|..+..+++|++|++++|.+++..+.. +.. .++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 9998877766655 88999999999998888888888888999999999888654421 100 1111122333333333
Q ss_pred CCCCCCCCCCcccccCCCCccCCCCCCCC
Q 037720 341 PAGSPFDHLDASSFESNKCLCGKPLLNAC 369 (369)
Q Consensus 341 p~~~~~~~l~~l~~~~n~~~c~~~~~~~c 369 (369)
|. .+....-.++..+...|..+.+..|
T Consensus 166 P~--~l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 166 PS--KVRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp ST--TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred Ch--HHcCCChhhCcHhhcCcCCCCCCCC
Confidence 43 3444555677778888887776655
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-18 Score=152.91 Aligned_cols=167 Identities=21% Similarity=0.301 Sum_probs=92.9
Q ss_pred CCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEE
Q 037720 107 LPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHL 186 (369)
Q Consensus 107 l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (369)
+.+++.+++++ +.+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +.++++|++|
T Consensus 18 l~~l~~l~l~~-~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTC-SCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEE
T ss_pred HHHHHHHHhcC-CCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEE
Confidence 33444555553 344322 2 3455666777777777666 333 566667777777777766643 32 6666677777
Q ss_pred EeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccc
Q 037720 187 DVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 187 ~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
++++|.+++ ++. +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777766664 222 222 5666666666666532 2355666666666666666533 2 4555566666666666555
Q ss_pred ccCCcccCc-CCCCEEEccCCcCC
Q 037720 267 GVIPASLLT-SGVNNLNLSKNSLE 289 (369)
Q Consensus 267 ~~~~~~~~~-~~L~~L~L~~n~l~ 289 (369)
+. ..+.. ++|+.|++++|.++
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 44 12222 55555555555554
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=2.8e-20 Score=183.96 Aligned_cols=108 Identities=6% Similarity=0.001 Sum_probs=67.2
Q ss_pred CCCCCcEEeccCCcccccCCcccCc--CCCCEEEcc----CCcCCcc-----CCcCcCCCCCCCEEEccCCC--CCCCCc
Q 037720 251 KMPDLSTLNLDFNRFSGVIPASLLT--SGVNNLNLS----KNSLEGK-----IPDAFGPKSYFMVLDLSYNK--LSGPIP 317 (369)
Q Consensus 251 ~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~--l~~~~~ 317 (369)
.+++|++|++..|.+++..+..+.. ++|++|+++ .|.+++. ++..+.++++|+.|++++|. +++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4566666666555555544333322 567777775 4455542 22234557777777776543 555544
Q ss_pred ccCc-CCCCcCEEEcccCcCce-eCCCC-CCCCCCCcccccCCC
Q 037720 318 RTLS-GTSYIGYLDLSHNNLCG-KIPAG-SPFDHLDASSFESNK 358 (369)
Q Consensus 318 ~~l~-~l~~L~~L~ls~N~l~g-~ip~~-~~~~~l~~l~~~~n~ 358 (369)
..+. .+++|++|++++|++++ .++.. ..+++|+.+++++|+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 4443 47889999999998876 34432 456889999999987
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1e-21 Score=192.60 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=143.1
Q ss_pred CCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeeccc-------------CCCCCCccccCCCCCcEEE-eeccc---
Q 037720 130 TLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY-------------VSGPIPGSIGNLSSLMHLD-VRNNR--- 192 (369)
Q Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~--- 192 (369)
..++.|+.|++++|.++ .+|..++++++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44666777777777776 566677777777777765553 3445555666666777766 44443
Q ss_pred ----------ccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC
Q 037720 193 ----------ISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262 (369)
Q Consensus 193 ----------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 262 (369)
++.. + ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++
T Consensus 425 L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 3211 1 1258899999999985 676 889999999999999998 7788999999999999999
Q ss_pred CcccccCCcccCc-CCCCEEEccCCcCCccC-CcCcCCCCCCCEEEccCCCCCCCCccc---CcCCCCcCEEEc
Q 037720 263 NRFSGVIPASLLT-SGVNNLNLSKNSLEGKI-PDAFGPKSYFMVLDLSYNKLSGPIPRT---LSGTSYIGYLDL 331 (369)
Q Consensus 263 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~l 331 (369)
|.+++ +| .+.. ++|++|++++|++++.. |..+..+++|+.|+|++|.+++.++.. +..+++|+.|++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99996 55 4444 89999999999999776 889999999999999999999765532 234788998874
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.6e-18 Score=153.85 Aligned_cols=170 Identities=23% Similarity=0.308 Sum_probs=143.3
Q ss_pred CCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEE
Q 037720 155 KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDL 234 (369)
Q Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 234 (369)
.+.++..++++++.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 456677788999998843 3 57889999999999999984 45 68899999999999999985544 8999999999
Q ss_pred EcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCC
Q 037720 235 DLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLS 313 (369)
Q Consensus 235 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 313 (369)
++++|++++ ++. +.. ++|++|++++|.+++. +. +.. ++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-DS-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-GG-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-hh-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999985 343 333 8999999999999864 33 433 8999999999999964 4 6889999999999999999
Q ss_pred CCCcccCcCCCCcCEEEcccCcCcee
Q 037720 314 GPIPRTLSGTSYIGYLDLSHNNLCGK 339 (369)
Q Consensus 314 ~~~~~~l~~l~~L~~L~ls~N~l~g~ 339 (369)
+. ..+..+++|++|++++|.+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 7789999999999999999854
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=5.7e-18 Score=142.97 Aligned_cols=130 Identities=28% Similarity=0.409 Sum_probs=65.6
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCc-cccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccC
Q 037720 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPG-SIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSG 214 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 214 (369)
++++++++.++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 33333322 445555555555433322 244555555555555555544445555555555555555
Q ss_pred CcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCccccc
Q 037720 215 NQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGV 268 (369)
Q Consensus 215 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 268 (369)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555544444455555555555555555555555555555555555555555543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3.9e-17 Score=134.68 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=72.9
Q ss_pred CCCcEEEccCCcCC-ccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 133 PFLRILDLTGNKIS-GEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 133 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555666665555 44555555555666666666655533 4455555666666666655544454444555555555
Q ss_pred ccCCcccccC-CccccCCCCCCEEEcccCCCccccc---cccCCCCCCcEEeccCCccc
Q 037720 212 LSGNQISGTI-PSSISRVYRLTDLDLSTNQISGPIP---ASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 212 l~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 266 (369)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 1455555666666666666554333 24555666666666665554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.6e-18 Score=173.32 Aligned_cols=220 Identities=17% Similarity=0.187 Sum_probs=121.4
Q ss_pred CCCCEEecCCCCCCcccCCcCCCCCCCCcE-----EEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCC
Q 037720 108 PHLSSLTLTDWEGISGEIPRCSTLLPFLRI-----LDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSS 182 (369)
Q Consensus 108 ~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~-----L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (369)
++++.|+|.+ +.+.. .+..+-....|.. +++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~-n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeC-CCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 5577778864 44443 2322222222222 222333333 45777888999999999999998 77877888999
Q ss_pred CcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC
Q 037720 183 LMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262 (369)
Q Consensus 183 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 262 (369)
|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999998 78888999999999999999998 77988999999999999999987 6787899999999999999
Q ss_pred CcccccCCcccCc--CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCC--------CCCCCCcccCcCCCCcCEEEcc
Q 037720 263 NRFSGVIPASLLT--SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYN--------KLSGPIPRTLSGTSYIGYLDLS 332 (369)
Q Consensus 263 n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n--------~l~~~~~~~l~~l~~L~~L~ls 332 (369)
|.+++.+|..+.. .....+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 9999888776654 22334778899998887754 556666666 3444444455566667777888
Q ss_pred cCcCceeC
Q 037720 333 HNNLCGKI 340 (369)
Q Consensus 333 ~N~l~g~i 340 (369)
+|-+.+..
T Consensus 400 ~Nil~~~~ 407 (727)
T 4b8c_D 400 YNTLCQHY 407 (727)
T ss_dssp --CCCGGG
T ss_pred cccccccc
Confidence 88776443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=9.8e-17 Score=132.26 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=117.3
Q ss_pred CCCCCCEEecCCCCCCc-ccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCc
Q 037720 106 KLPHLSSLTLTDWEGIS-GEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLM 184 (369)
Q Consensus 106 ~l~~L~~L~L~~~~~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (369)
..++|++|++++ +.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 347899999996 6676 78888889999999999999999865 7889999999999999999977888788899999
Q ss_pred EEEeecccccCCC-CcccCCCCCCcEEEccCCcccccCC---ccccCCCCCCEEEcccCCCc
Q 037720 185 HLDVRNNRISGPI-PGCFGRLHMLSRALLSGNQISGTIP---SSISRVYRLTDLDLSTNQIS 242 (369)
Q Consensus 185 ~L~Ls~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~ls~n~l~ 242 (369)
+|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999998643 2788999999999999999986554 47899999999999999887
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=4.4e-17 Score=131.59 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=61.9
Q ss_pred CCCcEEEccCCcCC-ccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 133 PFLRILDLTGNKIS-GEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 133 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555554 34444444555555555555554432 3444455555555555555443444444445555555
Q ss_pred ccCCccccc-CCccccCCCCCCEEEcccCCCccccc---cccCCCCCCcEEecc
Q 037720 212 LSGNQISGT-IPSSISRVYRLTDLDLSTNQISGPIP---ASLGKMPDLSTLNLD 261 (369)
Q Consensus 212 l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~---~~l~~l~~L~~L~L~ 261 (369)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555554431 22445555555555555555554333 244555555555543
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.6e-19 Score=176.96 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=72.0
Q ss_pred CCCCCEEEcccCCCccccccccC-CCCCCcEEecc--C----CcccccCCc-----ccCc-CCCCEEEccCCcCCccCCc
Q 037720 228 VYRLTDLDLSTNQISGPIPASLG-KMPDLSTLNLD--F----NRFSGVIPA-----SLLT-SGVNNLNLSKNSLEGKIPD 294 (369)
Q Consensus 228 l~~L~~L~ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~~~-----~~~~-~~L~~L~L~~n~l~~~~~~ 294 (369)
+++|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++.... .+.. ++|++|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 44555555555555433333332 35666666666 2 333311100 0111 5666666655 44443333
Q ss_pred CcCC-CCCCCEEEccCCCCCCCCcccC-cCCCCcCEEEcccCcCceeCCC--CCCCCCCCcccccCCCC
Q 037720 295 AFGP-KSYFMVLDLSYNKLSGPIPRTL-SGTSYIGYLDLSHNNLCGKIPA--GSPFDHLDASSFESNKC 359 (369)
Q Consensus 295 ~l~~-l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~ls~N~l~g~ip~--~~~~~~l~~l~~~~n~~ 359 (369)
.+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ...+++|+.+++++|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3433 6777888888877766555544 5577788888888877543221 23356777777777764
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.4e-17 Score=151.05 Aligned_cols=183 Identities=10% Similarity=0.088 Sum_probs=104.1
Q ss_pred CCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcc----cccCCccccCCCCC
Q 037720 156 LHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQI----SGTIPSSISRVYRL 231 (369)
Q Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~~l~~L 231 (369)
+++|+.|+|.+ .++..-..+|.++++|+++++.+|.+....+.+|..+.++..+....+.. .......+.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777766 55544445666777777777777766655556666666665555544211 11111222222222
Q ss_pred C--------------------------EEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEcc
Q 037720 232 T--------------------------DLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLS 284 (369)
Q Consensus 232 ~--------------------------~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~ 284 (369)
+ .+.+.++-...........+++|+.+++++|.++...+..+.. .+|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 2 2222211110000000112667777777777777555555555 677777777
Q ss_pred CCcCCccCCcCcCCCCCCC-EEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCC
Q 037720 285 KNSLEGKIPDAFGPKSYFM-VLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPA 342 (369)
Q Consensus 285 ~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~ 342 (369)
+| ++...+.+|.++++|+ .+++.+ +++...+.+|.++++|+.+++++|.++ .|+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 76 6655566777777777 777776 666566677777777777777777776 4444
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=131.26 Aligned_cols=126 Identities=25% Similarity=0.290 Sum_probs=72.0
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCC
Q 037720 208 SRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKN 286 (369)
Q Consensus 208 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n 286 (369)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. ++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 4454432 45666666666665 44556666666666666666666544444443 55566666666
Q ss_pred cCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCc
Q 037720 287 SLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 287 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
++++..+..|..+++|++|+|++|+|++..+..+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555555555555666666655555444444555555555555555554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=6.7e-16 Score=130.30 Aligned_cols=108 Identities=25% Similarity=0.320 Sum_probs=51.2
Q ss_pred CCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 037720 158 RLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLS 237 (369)
Q Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 237 (369)
+|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444444444 334444444444444444444444444444444444444444444444444444445555555555
Q ss_pred cCCCccccccccCCCCCCcEEeccCCccc
Q 037720 238 TNQISGPIPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 238 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
+|.++...+..+..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55554333334445555555555555443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=126.93 Aligned_cols=110 Identities=21% Similarity=0.320 Sum_probs=49.1
Q ss_pred CCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 037720 158 RLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLS 237 (369)
Q Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 237 (369)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333333444444444444444443333334444444444444444443333334444445555555
Q ss_pred cCCCccccccccCCCCCCcEEeccCCcccc
Q 037720 238 TNQISGPIPASLGKMPDLSTLNLDFNRFSG 267 (369)
Q Consensus 238 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 267 (369)
+|.+++..+..+..+++|++|++++|.+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 554443333334444555555555554443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.1e-16 Score=129.26 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=111.2
Q ss_pred CCCCCEEecCCCCCCc-ccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcE
Q 037720 107 LPHLSSLTLTDWEGIS-GEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMH 185 (369)
Q Consensus 107 l~~L~~L~L~~~~~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (369)
.++|++|++++ +.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 47899999996 6676 78888889999999999999999865 77889999999999999999777887778999999
Q ss_pred EEeecccccCC-CCcccCCCCCCcEEEccCCcccccCC---ccccCCCCCCEEEccc
Q 037720 186 LDVRNNRISGP-IPGCFGRLHMLSRALLSGNQISGTIP---SSISRVYRLTDLDLST 238 (369)
Q Consensus 186 L~Ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~ls~ 238 (369)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999863 34778999999999999999986655 5788899999998864
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=126.81 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=64.7
Q ss_pred CCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEc
Q 037720 229 YRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDL 307 (369)
Q Consensus 229 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 307 (369)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555555444444455555555555555555433333333 55666666666666555555566666667777
Q ss_pred cCCCCCCCCcccCcCCCCcCEEEcccCcCceeCC
Q 037720 308 SYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341 (369)
Q Consensus 308 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip 341 (369)
++|++++..+..+..+++|++|++++|.+++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7666665555555666667777777776665544
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=9.7e-19 Score=172.90 Aligned_cols=170 Identities=19% Similarity=0.152 Sum_probs=83.8
Q ss_pred CcceeecCcccc-CCCCCCEEecCCCCCCccc-CCcCCCCCCCCcEEEccCCcCCccCCccc----cCCCCCCEEEeecc
Q 037720 94 GYMTGFISPAVC-KLPHLSSLTLTDWEGISGE-IPRCSTLLPFLRILDLTGNKISGEIPRHI----GKLHRLSVLNIADN 167 (369)
Q Consensus 94 ~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n 167 (369)
+.+++..+..+. .+++|++|++++|..++.. ++....++++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 445554444443 5677777777754344332 33333456777777777777654333322 35567777777766
Q ss_pred c--CCCC-CCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCc--------------------------cc
Q 037720 168 Y--VSGP-IPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQ--------------------------IS 218 (369)
Q Consensus 168 ~--l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~--------------------------l~ 218 (369)
. ++.. ++..+.++++|++|++++|...+.++..+..+++|++|++..+. +.
T Consensus 195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~ 274 (594)
T 2p1m_B 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274 (594)
T ss_dssp CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCB
T ss_pred CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCc
Confidence 5 1100 11112335677777776662111133334444444444433221 00
Q ss_pred ----ccCCccccCCCCCCEEEcccCCCcccc-ccccCCCCCCcEEeccCC
Q 037720 219 ----GTIPSSISRVYRLTDLDLSTNQISGPI-PASLGKMPDLSTLNLDFN 263 (369)
Q Consensus 219 ----~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~L~~n 263 (369)
..++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus 275 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred ccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 112222234566666666666654321 222445566666666655
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=2.9e-13 Score=126.97 Aligned_cols=235 Identities=9% Similarity=0.054 Sum_probs=174.7
Q ss_pred CcceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCC
Q 037720 94 GYMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPI 173 (369)
Q Consensus 94 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 173 (369)
+.+...-..+|.++ +|+.+.+.+ ++...-...|.++ +|+.+.+.. .++...+.+|.++++|+.+++..|.++...
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred CccCEehHhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEec
Confidence 33444444566665 799999873 4654555667664 699999986 666566778999999999999999888443
Q ss_pred CccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCC
Q 037720 174 PGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMP 253 (369)
Q Consensus 174 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 253 (369)
...|. ..+|+.+.+..+ +......+|.++++|+.+.+..+ ++..-..+|.+ .+|+.+.+. +.++.....+|..++
T Consensus 197 ~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~ 271 (401)
T 4fdw_A 197 ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCP 271 (401)
T ss_dssp TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCT
T ss_pred hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCC
Confidence 44554 689999999854 66666788999999999999875 44355566766 789999994 446655577889999
Q ss_pred CCcEEeccCCccc-----ccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcC
Q 037720 254 DLSTLNLDFNRFS-----GVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIG 327 (369)
Q Consensus 254 ~L~~L~L~~n~l~-----~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 327 (369)
+|+.+.+.+|.+. ...+..+.. ++|+.+.+.+ .++......|.++++|+.+.+..+ ++.....+|.++ +|+
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 9999999887764 233344444 7899999984 477666778999999999999654 766677788888 999
Q ss_pred EEEcccCcCceeCCC
Q 037720 328 YLDLSHNNLCGKIPA 342 (369)
Q Consensus 328 ~L~ls~N~l~g~ip~ 342 (369)
.+++++|.+. .++.
T Consensus 349 ~l~l~~n~~~-~l~~ 362 (401)
T 4fdw_A 349 EVKVEGTTPP-QVFE 362 (401)
T ss_dssp EEEECCSSCC-BCCC
T ss_pred EEEEcCCCCc-cccc
Confidence 9999999776 4444
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=2.6e-15 Score=124.68 Aligned_cols=129 Identities=24% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEE
Q 037720 132 LPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRAL 211 (369)
Q Consensus 132 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 211 (369)
+++|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 344444444444444 2222111122444444444444422 3344444444444444444433222234444444444
Q ss_pred ccCCcccccCCc--cccCCCCCCEEEcccCCCcccccc----ccCCCCCCcEEeccCCcc
Q 037720 212 LSGNQISGTIPS--SISRVYRLTDLDLSTNQISGPIPA----SLGKMPDLSTLNLDFNRF 265 (369)
Q Consensus 212 l~~n~l~~~~~~--~l~~l~~L~~L~ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 265 (369)
+++|.+. .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.|++++|..
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4444443 2232 3444455555555555544 2222 244455555555555443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=3e-13 Score=126.93 Aligned_cols=232 Identities=11% Similarity=0.053 Sum_probs=183.5
Q ss_pred cceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCC
Q 037720 95 YMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIP 174 (369)
Q Consensus 95 ~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 174 (369)
.+...-..+|.++ +|+.+.+. +.+...-...|.++++|+.+++.+|.++.....+|. +.+|+.+.+..+ ++..-.
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp--~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~ 219 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFP--STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS 219 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECC--TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT
T ss_pred CccEECHHhcCCC-CceEEEeC--CCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh
Confidence 3444445566664 79999998 356655667899999999999999999965555666 689999999855 664556
Q ss_pred ccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCc-----ccccccc
Q 037720 175 GSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQIS-----GPIPASL 249 (369)
Q Consensus 175 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-----~~~~~~l 249 (369)
.+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++..-..+|.++++|+.+++.++.+. ......|
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 78999999999999875 55556677777 799999994 4566566788999999999999988764 3456789
Q ss_pred CCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCC-CcC
Q 037720 250 GKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTS-YIG 327 (369)
Q Consensus 250 ~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~ 327 (369)
..+++|+.+.+.. .++......+.. .+|+.+.+..+ ++.....+|.++ +|+.+++++|.+.......+..++ +++
T Consensus 297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence 9999999999984 476555666666 89999999665 776677889999 999999999998877777787775 688
Q ss_pred EEEcccCcCc
Q 037720 328 YLDLSHNNLC 337 (369)
Q Consensus 328 ~L~ls~N~l~ 337 (369)
.|.+-.+.+.
T Consensus 374 ~l~vp~~~~~ 383 (401)
T 4fdw_A 374 VIRVPAESVE 383 (401)
T ss_dssp EEEECGGGHH
T ss_pred EEEeCHHHHH
Confidence 8888777554
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.4e-14 Score=131.05 Aligned_cols=221 Identities=12% Similarity=0.069 Sum_probs=160.7
Q ss_pred CCCCCEEecCCCCCCc----------c---------cC-CcCCCC--------CCCCcEEEccCCcCCccCCccccCCCC
Q 037720 107 LPHLSSLTLTDWEGIS----------G---------EI-PRCSTL--------LPFLRILDLTGNKISGEIPRHIGKLHR 158 (369)
Q Consensus 107 l~~L~~L~L~~~~~l~----------~---------~~-~~~~~~--------l~~L~~L~L~~n~l~~~~~~~l~~l~~ 158 (369)
+++|+.|||++ +.+. . .+ ...|.+ +++|++|++.+ .++...+.+|.++++
T Consensus 48 l~~L~~LdLs~-n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISN-AEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEE-EEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCc-ceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 77888888875 3333 0 12 234566 89999999998 888677778999999
Q ss_pred CCEEEeecccCCCCCCccccCCCCCcEEEeecccc----cCCCCcccCCCCCCc-EEE----------------------
Q 037720 159 LSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRI----SGPIPGCFGRLHMLS-RAL---------------------- 211 (369)
Q Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~l~~l~~L~-~L~---------------------- 211 (369)
|+.+++.+|.+....+..|.++.++.++....+.. .......|.++..|+ .+.
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 99999999998866667788877777776554221 112233344444444 222
Q ss_pred ---ccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCC-EEEccCC
Q 037720 212 ---LSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVN-NLNLSKN 286 (369)
Q Consensus 212 ---l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~-~L~L~~n 286 (369)
+.++-...........+++|+.+++++|+++......|..+++|+++++.+| +....+..|.. .+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 2222111000001123789999999999998777778999999999999998 77566666666 7899 999998
Q ss_pred cCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEc
Q 037720 287 SLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDL 331 (369)
Q Consensus 287 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 331 (369)
.++...+.+|.++++|+.+++++|+++...+.+|.++++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 787677889999999999999999999888889999999999874
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=2e-17 Score=140.27 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=94.5
Q ss_pred CCCCCCEEecCCCCCCcccCCc------CCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccC
Q 037720 106 KLPHLSSLTLTDWEGISGEIPR------CSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGN 179 (369)
Q Consensus 106 ~l~~L~~L~L~~~~~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (369)
....++.+++++ +.+.+.+|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~-~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEK-VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HTTCCCCTTCSE-EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred hcccccCcchhe-eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 344455555553 444445444 56667777777777777774 45 6667777777777777776 55665666
Q ss_pred CCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEcccCCCcccccc----------c
Q 037720 180 LSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIP-SSISRVYRLTDLDLSTNQISGPIPA----------S 248 (369)
Q Consensus 180 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~----------~ 248 (369)
+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 6777777777777764 33 46666677777777776663221 3566667777777777766554443 2
Q ss_pred cCCCCCCcEEeccCCccc
Q 037720 249 LGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 249 l~~l~~L~~L~L~~n~l~ 266 (369)
+..+++|+.|+ ++.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 55566666654 44443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=9.5e-15 Score=121.27 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCE
Q 037720 202 GRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNN 280 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~ 280 (369)
.++.+|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.. ++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34445555555555554 2233222223566666666666543 45566666666666666666443333222 66777
Q ss_pred EEccCCcCCccCCc--CcCCCCCCCEEEccCCCCCCCCcc----cCcCCCCcCEEEcccCcCc
Q 037720 281 LNLSKNSLEGKIPD--AFGPKSYFMVLDLSYNKLSGPIPR----TLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 281 L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~ls~N~l~ 337 (369)
|++++|.++ .+|. .+..+++|+.|++++|.++ .+|. .+..+++|++||+++|.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777665 3443 5677777888888888776 3444 3677778888888877665
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.2e-13 Score=113.99 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=74.3
Q ss_pred CCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccC
Q 037720 231 LTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSY 309 (369)
Q Consensus 231 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 309 (369)
.+.+++++|.++. +|..+ .++|++|++++|.+++..|..+.. ++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4667777777763 45444 267777777777777666665555 6777777777777766566667777777777777
Q ss_pred CCCCCCCcccCcCCCCcCEEEcccCcCceeCC
Q 037720 310 NKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIP 341 (369)
Q Consensus 310 n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip 341 (369)
|+|++..+..+..+++|++|++++|.++...+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77776666667777777777777777765443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.4e-16 Score=135.00 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=102.2
Q ss_pred CCCCCcEEEccCCcCCccCCc------cccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCC
Q 037720 131 LLPFLRILDLTGNKISGEIPR------HIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRL 204 (369)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 204 (369)
....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 345666677777777766665 78888899999999998885 56 7888888999999988887 566667777
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccc-cccCCCCCCcEEeccCCcccccCC
Q 037720 205 HMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIP-ASLGKMPDLSTLNLDFNRFSGVIP 270 (369)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~ 270 (369)
++|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 888888888888874 44 57777888888888888874322 467778888888888887766544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2.5e-13 Score=112.06 Aligned_cols=104 Identities=26% Similarity=0.401 Sum_probs=46.6
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCC
Q 037720 136 RILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGN 215 (369)
Q Consensus 136 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 215 (369)
+++++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34444444444 2333321 44444444444444444444444444444444444444333333444444444444444
Q ss_pred cccccCCccccCCCCCCEEEcccCCCc
Q 037720 216 QISGTIPSSISRVYRLTDLDLSTNQIS 242 (369)
Q Consensus 216 ~l~~~~~~~l~~l~~L~~L~ls~n~l~ 242 (369)
++++..+..+..+++|++|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 444333333444444444444444443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=3e-13 Score=111.94 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=70.8
Q ss_pred CEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCC
Q 037720 232 TDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYN 310 (369)
Q Consensus 232 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 310 (369)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..+.. ++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 4555443 67777777777777666655554 67777777777777555555667777777777777
Q ss_pred CCCCCCcccCcCCCCcCEEEcccCcCce
Q 037720 311 KLSGPIPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 311 ~l~~~~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
+|++..+..+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7775555557777777777777777663
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.6e-13 Score=110.86 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEc
Q 037720 157 HRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDL 236 (369)
Q Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 236 (369)
++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444333334444444444444444444332333334444444444444444222223444444444444
Q ss_pred ccCCC
Q 037720 237 STNQI 241 (369)
Q Consensus 237 s~n~l 241 (369)
++|.+
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 44443
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.1e-14 Score=135.28 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=53.5
Q ss_pred CCCcEEEccCCcCCccCCccc----c-CCCCCCEEEeecccCCCCCCccc-cCCCCCcEEEeecccccCCCCccc-----
Q 037720 133 PFLRILDLTGNKISGEIPRHI----G-KLHRLSVLNIADNYVSGPIPGSI-GNLSSLMHLDVRNNRISGPIPGCF----- 201 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l----- 201 (369)
+.|++|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555543222221 1 12455555555555442111111 122345555555554432211111
Q ss_pred CCCCCCcEEEccCCcccc----cCCccccCCCCCCEEEcccCCCccc----cccccCCCCCCcEEeccCCccc
Q 037720 202 GRLHMLSRALLSGNQISG----TIPSSISRVYRLTDLDLSTNQISGP----IPASLGKMPDLSTLNLDFNRFS 266 (369)
Q Consensus 202 ~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 266 (369)
...++|++|++++|.++. .++..+...++|++|++++|.+++. ++..+...++|++|++++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 123444444444444432 1222233444455555555544321 1223333344444444444443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.9e-14 Score=132.53 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=114.6
Q ss_pred CCCCCEEEeecccCCCCCCccc----c-CCCCCcEEEeecccccCCCCccc-CCCCCCcEEEccCCcccccCCccc----
Q 037720 156 LHRLSVLNIADNYVSGPIPGSI----G-NLSSLMHLDVRNNRISGPIPGCF-GRLHMLSRALLSGNQISGTIPSSI---- 225 (369)
Q Consensus 156 l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l---- 225 (369)
++.|++|++++|.++......+ . ...+|++|+|++|.++......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999998874322222 2 23689999999998864322222 235678889999888865433333
Q ss_pred -cCCCCCCEEEcccCCCcc----ccccccCCCCCCcEEeccCCcccccC----CcccCc-CCCCEEEccCCcCCcc----
Q 037720 226 -SRVYRLTDLDLSTNQISG----PIPASLGKMPDLSTLNLDFNRFSGVI----PASLLT-SGVNNLNLSKNSLEGK---- 291 (369)
Q Consensus 226 -~~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~-~~L~~L~L~~n~l~~~---- 291 (369)
...++|++|++++|.++. .++..+..+++|++|+|++|.+++.. ...+.. ++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346788888888888863 23445567788888888888887532 222222 6788888888887753
Q ss_pred CCcCcCCCCCCCEEEccCCCCCCCCcccCcCC---C--CcCEEE--cccCcCc
Q 037720 292 IPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGT---S--YIGYLD--LSHNNLC 337 (369)
Q Consensus 292 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~--~L~~L~--ls~N~l~ 337 (369)
++..+...++|++|+|++|.|++.....+... . .++.+. +..|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344556778888888888876544444322 1 155555 5555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=7.1e-12 Score=115.35 Aligned_cols=104 Identities=25% Similarity=0.291 Sum_probs=79.3
Q ss_pred CEEEcccC-CCccccccccCCCCCCcEEeccC-CcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEcc
Q 037720 232 TDLDLSTN-QISGPIPASLGKMPDLSTLNLDF-NRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLS 308 (369)
Q Consensus 232 ~~L~ls~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 308 (369)
..++++++ +++ .+|. +..+++|++|+|++ |.+++..+..+.. ++|++|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 777 4666 88888888888885 8888766666655 788888888888887777778888888888888
Q ss_pred CCCCCCCCcccCcCCCCcCEEEcccCcCce
Q 037720 309 YNKLSGPIPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 309 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
+|+|++..+..+..++ |++|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888866555555555 8888888888764
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.1e-11 Score=112.18 Aligned_cols=104 Identities=18% Similarity=0.126 Sum_probs=87.3
Q ss_pred EEecCCCCCCcccCCcCCCCCCCCcEEEccC-CcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCCCcEEEeec
Q 037720 112 SLTLTDWEGISGEIPRCSTLLPFLRILDLTG-NKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRN 190 (369)
Q Consensus 112 ~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 190 (369)
.++.++.+.++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45777533666 5788 88899999999996 999977778899999999999999999988888899999999999999
Q ss_pred ccccCCCCcccCCCCCCcEEEccCCccc
Q 037720 191 NRISGPIPGCFGRLHMLSRALLSGNQIS 218 (369)
Q Consensus 191 n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 218 (369)
|.+++..+..+..++ |++|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999876666666665 999999999886
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=4.4e-09 Score=98.42 Aligned_cols=249 Identities=12% Similarity=0.082 Sum_probs=125.5
Q ss_pred ceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCc---------------------CCccCCcccc
Q 037720 96 MTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNK---------------------ISGEIPRHIG 154 (369)
Q Consensus 96 ~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~---------------------l~~~~~~~l~ 154 (369)
+...-..+|.++++|+.+++.+ .+...-...|.+++.|+.+.+..+- +......+|.
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~ 159 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFA 159 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTT
T ss_pred ccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhc
Confidence 4444445667777777777752 2332223445555555554443210 0111123455
Q ss_pred CCCCCCEEEeecccCCCCCCccccCCCCCcEEEeecccccCCCCcccCCCCCCcEEEccCCccc----------------
Q 037720 155 KLHRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQIS---------------- 218 (369)
Q Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---------------- 218 (369)
++++|+.+.+..+... .....|.++.+|+.+.+..+ ++.....++.++..|+.+.+..+...
T Consensus 160 ~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 160 TCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIII 237 (394)
T ss_dssp TCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEE
T ss_pred ccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEE
Confidence 6666666666544322 23345566666666666544 33233344555555555544332211
Q ss_pred -----ccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccC
Q 037720 219 -----GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKI 292 (369)
Q Consensus 219 -----~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~ 292 (369)
......+..+..++.+.+..+... .....+..+..++.+......+. ...+.. .+|+.+.+..+ ++...
T Consensus 238 p~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 238 PDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp CTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEEC
T ss_pred CCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceec
Confidence 011122334444555554443222 22334444455555444433221 112222 67777777654 55455
Q ss_pred CcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcCceeCCCC--CCCCCCCcccccC
Q 037720 293 PDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNLCGKIPAG--SPFDHLDASSFES 356 (369)
Q Consensus 293 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~l~~l~~~~ 356 (369)
..+|.++.+|+.+++.++ ++.....+|.++.+|+.+++..+ ++ .|+.. ..+.+|+.+++..
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 567778888888888643 65555667777888888887665 44 45543 2235566666543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=6.5e-11 Score=109.18 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=50.3
Q ss_pred CCCCCcEEeccCCcccccCCcccC----cCCCCEEEccCCcCCcc----CCcCcCCCCCCCEEEccCCCCCCCCcccCcC
Q 037720 251 KMPDLSTLNLDFNRFSGVIPASLL----TSGVNNLNLSKNSLEGK----IPDAFGPKSYFMVLDLSYNKLSGPIPRTLSG 322 (369)
Q Consensus 251 ~l~~L~~L~L~~n~l~~~~~~~~~----~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 322 (369)
.+++|+.|++.+|.+.+..+..+. .++|++|+|+.|.+++. ++..+.++++|+.|++++|.|++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356677777766666543222221 15677777777777653 3334455678888888888877654444433
Q ss_pred -CCCcCEEEcccCc
Q 037720 323 -TSYIGYLDLSHNN 335 (369)
Q Consensus 323 -l~~L~~L~ls~N~ 335 (369)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567787776
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.2e-08 Score=95.50 Aligned_cols=219 Identities=10% Similarity=0.035 Sum_probs=141.8
Q ss_pred cccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCC
Q 037720 103 AVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSS 182 (369)
Q Consensus 103 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (369)
++.++++|+.+.+.+ .+...-...|.++.+|+.+.+..+ ++.....+|.++..|+.+.+..+... +...+....+
T Consensus 157 aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 157 AFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 455556666666642 222223344555566666665544 33233445556666665555444322 2223334456
Q ss_pred CcEEEeecccccCCCCcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccC
Q 037720 183 LMHLDVRNNRISGPIPGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDF 262 (369)
Q Consensus 183 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 262 (369)
|+.+.+... ++......+..+..|+.+.+..+... .....+..+..++.+......+ ....+..+.+|+.+.+..
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence 777766543 33344556778888999988776543 4556788888898888776543 234677889999999876
Q ss_pred CcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccC
Q 037720 263 NRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334 (369)
Q Consensus 263 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 334 (369)
+ ++......+.. .+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5 55444455555 78999999754 66566778999999999999876 77667788999999999998755
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.6e-10 Score=106.61 Aligned_cols=135 Identities=12% Similarity=0.218 Sum_probs=82.0
Q ss_pred cCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCcccccccc--CCCCCCcEEeccC--Cccccc-----CCc
Q 037720 201 FGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASL--GKMPDLSTLNLDF--NRFSGV-----IPA 271 (369)
Q Consensus 201 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l--~~l~~L~~L~L~~--n~l~~~-----~~~ 271 (369)
+..+++|++|.+.++.-. .++. +. +++|+.|++..+.+.......+ ..+++|+.|+|+. +...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344555666666554211 1222 22 5667777777666653322233 2567777777642 111111 011
Q ss_pred cc---CcCCCCEEEccCCcCCccCCcCc---CCCCCCCEEEccCCCCCCC----CcccCcCCCCcCEEEcccCcCce
Q 037720 272 SL---LTSGVNNLNLSKNSLEGKIPDAF---GPKSYFMVLDLSYNKLSGP----IPRTLSGTSYIGYLDLSHNNLCG 338 (369)
Q Consensus 272 ~~---~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~N~l~g 338 (369)
.+ ..++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11 12799999999999875433222 3578999999999999875 34444567999999999999874
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.96 E-value=6e-08 Score=90.63 Aligned_cols=107 Identities=9% Similarity=0.189 Sum_probs=56.4
Q ss_pred ccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccCCcCCccCCcCcCCCCCCC
Q 037720 225 ISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSKNSLEGKIPDAFGPKSYFM 303 (369)
Q Consensus 225 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 303 (369)
|.++..|+.+.+..+..+ .-...|.++++|+.+.+.. .++......+.. .+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 344445555555433221 2233455555666655542 233233333333 56666666543 4434455666666777
Q ss_pred EEEccCCCCCCCCcccCcCCCCcCEEEcccCc
Q 037720 304 VLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNN 335 (369)
Q Consensus 304 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 335 (369)
.+.+..+ ++.....+|.++.+|+.+++.++.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 7666543 554455566666777777766654
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.80 E-value=3.9e-07 Score=85.09 Aligned_cols=132 Identities=11% Similarity=0.163 Sum_probs=93.3
Q ss_pred CcccCCCCCCcEEEccCCcccccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-C
Q 037720 198 PGCFGRLHMLSRALLSGNQISGTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-S 276 (369)
Q Consensus 198 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~ 276 (369)
..+|.++..|+.+.+..+... .....+.++.+|+.+.+.. .++......|..+.+|+.+.+..+ ++......+.. .
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 346778888999988765443 4556788999999999964 455455678999999999999765 55455556666 8
Q ss_pred CCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcC
Q 037720 277 GVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336 (369)
Q Consensus 277 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 336 (369)
+|+++.+..+ ++.....+|.+|++|+.+++.++... ...+.....|+.+.+..|.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9999999765 66566778999999999999988643 24667778888888876654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.69 E-value=2.2e-06 Score=79.43 Aligned_cols=67 Identities=6% Similarity=-0.092 Sum_probs=36.9
Q ss_pred cceeecCccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeec
Q 037720 95 YMTGFISPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIAD 166 (369)
Q Consensus 95 ~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 166 (369)
.++..-..+|.++.+|+.+++.+ .++..-...|.++ +|+.+.+..+ ++.....+|.. .+|+.+.+..
T Consensus 56 ~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 56 GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCT
T ss_pred CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCC
Confidence 35555566788888888888863 3443334455555 4666655432 33222333433 2566666644
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=2.1e-09 Score=89.64 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=67.2
Q ss_pred cccCCCCCCEEEcccC-CCcc----ccccccCCCCCCcEEeccCCcccccCCcccC----c-CCCCEEEccCCcCCcc--
Q 037720 224 SISRVYRLTDLDLSTN-QISG----PIPASLGKMPDLSTLNLDFNRFSGVIPASLL----T-SGVNNLNLSKNSLEGK-- 291 (369)
Q Consensus 224 ~l~~l~~L~~L~ls~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~-~~L~~L~L~~n~l~~~-- 291 (369)
.+...++|++|++++| .+.. .+...+...++|++|+|++|.+.+.....+. . +.|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666665 5542 1233445556666666666665532211111 1 5677777777776642
Q ss_pred --CCcCcCCCCCCCEEEc--cCCCCCCC----CcccCcCCCCcCEEEcccCcCc
Q 037720 292 --IPDAFGPKSYFMVLDL--SYNKLSGP----IPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 292 --~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+...+...++|++|+| ++|.|+.. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445666677888888 77887754 3344556678888888888764
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=4.5e-10 Score=98.63 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=49.5
Q ss_pred cCCCCCCEEEeecccCCC--CCCccccCCCCCcEEEeecccccCCCCcccCCCC--CCcEEEccCCcccccCC-------
Q 037720 154 GKLHRLSVLNIADNYVSG--PIPGSIGNLSSLMHLDVRNNRISGPIPGCFGRLH--MLSRALLSGNQISGTIP------- 222 (369)
Q Consensus 154 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~------- 222 (369)
.++++|+.|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356667777777777665 2344455667777777777776643 2233333 77777777777765544
Q ss_pred ccccCCCCCCEEE
Q 037720 223 SSISRVYRLTDLD 235 (369)
Q Consensus 223 ~~l~~l~~L~~L~ 235 (369)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356677777776
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=1.5e-05 Score=73.64 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=121.2
Q ss_pred cccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEccCCcCCccCCccccCCCCCCEEEeecccCCCCCCccccCCCC
Q 037720 103 AVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNYVSGPIPGSIGNLSS 182 (369)
Q Consensus 103 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (369)
.+....+|+.+.+. .+++..-..+|.++.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++..-..+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 35566789999997 4677666678999999999999754 665566778877 6888877544 33222234443 46
Q ss_pred CcEEEeeccccc---------------------CCCCcccCCCCCCcEEEccCCccc-----------------------
Q 037720 183 LMHLDVRNNRIS---------------------GPIPGCFGRLHMLSRALLSGNQIS----------------------- 218 (369)
Q Consensus 183 L~~L~Ls~n~l~---------------------~~~~~~l~~l~~L~~L~l~~n~l~----------------------- 218 (369)
|+.+.+..+-.. ......+..+..++.+.+..+...
T Consensus 115 L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 115 LDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp CSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred cccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 777777543211 111222334444444443322110
Q ss_pred ------------ccCCccccCCCCCCEEEcccCCCccccccccCCCCCCcEEeccCCcccccCCcccCc-CCCCEEEccC
Q 037720 219 ------------GTIPSSISRVYRLTDLDLSTNQISGPIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-SGVNNLNLSK 285 (369)
Q Consensus 219 ------------~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 285 (369)
......+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++......+.. ..++.+.+..
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 000111223334444444332 22122334455566666666543 33222223332 5566666644
Q ss_pred CcCCccCCcCcCCCCCCCEEEccCCCCCCCCcccCcCCCCcCEEEcccC
Q 037720 286 NSLEGKIPDAFGPKSYFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHN 334 (369)
Q Consensus 286 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N 334 (369)
+ ++......|.++.+|+.+.+.++.++.....+|.++.+|+.+++..+
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred c-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 3 44344455666777777777766666555666667777777776543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=9e-09 Score=85.72 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=7.6
Q ss_pred cCCCCCCEEEeecccCC
Q 037720 154 GKLHRLSVLNIADNYVS 170 (369)
Q Consensus 154 ~~l~~L~~L~L~~n~l~ 170 (369)
...++|++|+|++|.+.
T Consensus 62 ~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCCSCCEEECTTSCCC
T ss_pred HhCCCcCEEECcCCCCC
Confidence 33444444444444443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.6e-08 Score=88.74 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=15.5
Q ss_pred CCCCCcceEeCCCCCcEEEEEcCC
Q 037720 57 CCHNWYGVSCDPETHQVAEITLRG 80 (369)
Q Consensus 57 ~c~~w~gv~c~~~~~~v~~L~L~~ 80 (369)
.|. |.|+.|+..+.+|..+...+
T Consensus 77 l~~-~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 77 LKA-VNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHH-TTSSCBCTTSCBCCCEEEEC
T ss_pred HHh-cCcEEECCCCCEEEEEEecC
Confidence 454 99999987666775554433
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=8.5e-07 Score=72.34 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEeeccc-CCCCCCccccCC----CCCcEEEeeccc-ccCCCCcccCCCCC
Q 037720 133 PFLRILDLTGNKISGEIPRHIGKLHRLSVLNIADNY-VSGPIPGSIGNL----SSLMHLDVRNNR-ISGPIPGCFGRLHM 206 (369)
Q Consensus 133 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 206 (369)
.+|++||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356667777666665444455666666666666664 442211223332 245566665553 43222223334444
Q ss_pred CcEEEccCC
Q 037720 207 LSRALLSGN 215 (369)
Q Consensus 207 L~~L~l~~n 215 (369)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3.2e-06 Score=68.96 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=36.9
Q ss_pred CCCCEEEeecccCCCCCCccccCCCCCcEEEeeccc-ccCCCCcccCCC----CCCcEEEccCCc-ccccCCccccCCCC
Q 037720 157 HRLSVLNIADNYVSGPIPGSIGNLSSLMHLDVRNNR-ISGPIPGCFGRL----HMLSRALLSGNQ-ISGTIPSSISRVYR 230 (369)
Q Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~ 230 (369)
.+|++||++++.++..--..+.++++|++|+|++|. ++...-..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666665553323334555555555555553 332211222222 234455554442 33222223334444
Q ss_pred CCEEEcccC
Q 037720 231 LTDLDLSTN 239 (369)
Q Consensus 231 L~~L~ls~n 239 (369)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=7.1e-06 Score=68.15 Aligned_cols=112 Identities=10% Similarity=0.116 Sum_probs=64.5
Q ss_pred cCCCCCCEEEcccC-CCcc----ccccccCCCCCCcEEeccCCcccccCCcccCc-----CCCCEEEccCCcCCcc----
Q 037720 226 SRVYRLTDLDLSTN-QISG----PIPASLGKMPDLSTLNLDFNRFSGVIPASLLT-----SGVNNLNLSKNSLEGK---- 291 (369)
Q Consensus 226 ~~l~~L~~L~ls~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~L~~n~l~~~---- 291 (369)
.+-+.|+.|++++| ++.. .+.+.+..-+.|+.|+|++|.+.+..-..+.. +.|++|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666653 5431 23344555566666666666665433333322 6677777777777642
Q ss_pred CCcCcCCCCCCCEEEccCC---CCCC----CCcccCcCCCCcCEEEcccCcCc
Q 037720 292 IPDAFGPKSYFMVLDLSYN---KLSG----PIPRTLSGTSYIGYLDLSHNNLC 337 (369)
Q Consensus 292 ~~~~l~~l~~L~~L~Ls~n---~l~~----~~~~~l~~l~~L~~L~ls~N~l~ 337 (369)
+...+..-+.|++|+|++| .+.. .+.+.+...+.|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2334555566888888754 3332 24455666777888888766543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.56 E-value=8.8e-05 Score=57.45 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=17.4
Q ss_pred CCCEEEccCCCCCCCCcccCcCCCCcCEEEcccCcC
Q 037720 301 YFMVLDLSYNKLSGPIPRTLSGTSYIGYLDLSHNNL 336 (369)
Q Consensus 301 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 336 (369)
+|+.|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555544444444444555544444433
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=3.8e-05 Score=63.75 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=9.6
Q ss_pred CcCCCCCCCEEEccCCCC
Q 037720 295 AFGPKSYFMVLDLSYNKL 312 (369)
Q Consensus 295 ~l~~l~~L~~L~Ls~n~l 312 (369)
.+..-+.|+.|+++.|.+
T Consensus 152 aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 152 AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCCCCH
T ss_pred HHHhCCCcCeEeccCCCc
Confidence 344445566666655543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.002 Score=49.63 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=41.5
Q ss_pred cEEeccCCccc-ccCCcccCcCCCCEEEccCCcCCccCCcCcCCCCCCCEEEccCCCCC
Q 037720 256 STLNLDFNRFS-GVIPASLLTSGVNNLNLSKNSLEGKIPDAFGPKSYFMVLDLSYNKLS 313 (369)
Q Consensus 256 ~~L~L~~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 313 (369)
..++.+++.++ ..+|..+ ..++++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777776 2444332 257888888888888666667788888888888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.29 E-value=37 Score=24.03 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=5.5
Q ss_pred cccCCCCCCEEEe
Q 037720 152 HIGKLHRLSVLNI 164 (369)
Q Consensus 152 ~l~~l~~L~~L~L 164 (369)
+|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.36 E-value=28 Score=24.63 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=17.8
Q ss_pred CccccCCCCCCEEecCCCCCCcccCCcCCCCCCCCcEEEcc
Q 037720 101 SPAVCKLPHLSSLTLTDWEGISGEIPRCSTLLPFLRILDLT 141 (369)
Q Consensus 101 ~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~ 141 (369)
..+|..|+.|+++.+- ..++..-...|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP--~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQ--PNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEEC--TTSSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcC--CchheEcHHHHhccCCccEEEEc
Confidence 3445555555555554 23332233344445555544444
Done!