BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037721
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 117/236 (49%), Gaps = 23/236 (9%)
Query: 217 AIKTCNEMEGPYLDFVRTQFKKPVLLTGPLVN--PEPPSGELEERWAKWLCKYPPKSVIY 274
AIK E P LD K PV GPLVN + E KWL P SV+Y
Sbjct: 222 AIKALQE---PGLD------KPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLY 272
Query: 275 CSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNV--------DGQSELVRTLPPGF 326
SFGS LT +Q+ ELA+GL + F V+ P + Q++ + LPPGF
Sbjct: 273 VSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGF 332
Query: 327 MDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLN 386
++R K RG V W Q +L H S G ++ H G++S E+V+S L+ PL +Q +N
Sbjct: 333 LERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
Query: 387 SKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWRE 442
+ L++ D++A + R DG +E++ + VK +M E G +R K +E
Sbjct: 393 AVLLSEDIRAALR-PRAGDDGLVRREEVARVVKGLM---EGEEGKGVRNKMKELKE 444
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 7 EADQLHVVMFPWFAFGHISPFVQLSNKL-SLHGVKVSFFSA 46
E+ HV + P GH+ P V+ + +L LHG+ V+F A
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA 43
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 29/295 (9%)
Query: 145 SAISQAYLVVPARKLNNSLADLMKSPD---GFPATSITSLDEFVARDYLYVYTKFNGGPS 201
S ++ Y + K + +KS D GFP + L E V +D +
Sbjct: 151 SLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATM----- 205
Query: 202 VYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGP--LVNPEPPSGELEER 259
+++ G++ + + +AI + + + + ++FK +L GP L P+ + E
Sbjct: 206 LHKMGLE-LPRANAVAINSFATIHPLIENELNSKFKL-LLNVGPFNLTTPQRKVSD-EHG 262
Query: 260 WAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELV 319
+WL ++ SV+Y SFGS ++ LA LE G PF P
Sbjct: 263 CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPK-------- 314
Query: 320 RTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL 379
LP GF++R K +G + W Q IL+H SVG ++ HSG++SV E ++ ++ P
Sbjct: 315 EKLPKGFLERTKTKGKI-VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPF 373
Query: 380 KGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIR 434
GDQ LN+ L L+ GV V+ +G KE I KA++ M + E G +R
Sbjct: 374 FGDQGLNTILTESVLEIGVGVD----NGVLTKESIKKALELTM---SSEKGGIMR 421
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 180/445 (40%), Gaps = 49/445 (11%)
Query: 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIP 71
HVVM P+ GHI+P +L+ L L G ++F + N R+ S
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 72 HV-DGLPP--GLDSTSEMTPHMAE-----LLKQALDLMQ--------PQIKTLLSQLKPH 115
+ DGL P G S+ P + + LK +L+ P + L+S
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMS 129
Query: 116 FVFFDFTHYWLPG-LVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPDGFP 174
F + LP L S +N F + + ++ + + L D P
Sbjct: 130 FTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIP 189
Query: 175 ATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCD---VLAIKTCNEMEGPYLDF 231
L F +D + N + E I+ D + + + T NE+E ++
Sbjct: 190 G-----LKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA 244
Query: 232 VRTQFKKPVLLTGPL---VNPEPPSGELE----ERWAK------WLCKYPPKSVIYCSFG 278
+ + + GPL + P +L+ W + WL P SV+Y +FG
Sbjct: 245 LSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG 303
Query: 279 SETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHT 338
S T +T +Q+ E A GL F ++ P V G S + + F + + DRG++
Sbjct: 304 STTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSS---EFTNEIADRGLI-A 358
Query: 339 GWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGV 398
W Q +L H S+G ++ H G++S TE++ + ++ P DQ + + + + + G+
Sbjct: 359 SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM 418
Query: 399 EVNRRDHDGHFGKEDIFKAVKTVMV 423
E+ D + +E++ K + V+
Sbjct: 419 EI-----DTNVKREELAKLINEVIA 438
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 20/227 (8%)
Query: 218 IKTCNEMEGPYLDFVRTQFKKPVLLTGP--LVNPEPPSGELEERWAKWLCKYPPKSVIYC 275
I + E++ + ++++ K L GP L+ P PP +WL + P SV+Y
Sbjct: 219 INSFEELDDSLTNDLKSKLKT-YLNIGPFNLITP-PPVVPNTTGCLQWLKERKPTSVVYI 276
Query: 276 SFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGV 335
SFG+ T ++ L+ LE + +PF L V LP GF+++ + G+
Sbjct: 277 SFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH--------LPEGFLEKTRGYGM 328
Query: 336 VHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLK 395
V W Q +L HE+VG +V H G++S+ E+V L+ P GDQ LN ++V L+
Sbjct: 329 V-VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 396 AGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWRE 442
GV R G F K + ++ ++E G +R N + RE
Sbjct: 388 IGV----RIEGGVFTKSGLMSCFDQIL---SQEKGKKLRENLRALRE 427
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/433 (22%), Positives = 188/433 (43%), Gaps = 42/433 (9%)
Query: 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVK-------VSFFSAPGNIPRIKSSLNLTPMAD 64
++ P GH++ ++ + L+ H + F P IKS L P
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 65 IIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHY 124
+I L P V+ P L + E ++ L+ + ++ IKT+LS V F
Sbjct: 71 LIDL--PEVEPPPQELLKSPEF--YILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVS 126
Query: 125 WLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPD-GFPATSITSLDE 183
+ VG++ GI + +F + +L + N + ++ D +I +
Sbjct: 127 MID--VGNEFGIPSY---LFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISN 181
Query: 184 FVARDYL--YVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKK--P 239
V + L + K +GG Y + + + + T +++E +D + +K P
Sbjct: 182 QVPSNVLPDACFNK-DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240
Query: 240 VLLTGPLVN----PEPPSGELEERWA-KWLCKYPPKSVIYCSFGSETF-LTVDQIKELAI 293
+ GPL++ P P + + KWL + P KSV++ FGS QI+E+A+
Sbjct: 241 IYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIAL 300
Query: 294 GLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMD--RVKDRGVVHTGWVQQQLILRHES 351
GL+ +G+ F S + P GF++ ++ +G++ GW Q +L H++
Sbjct: 301 GLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMI-CGWAPQVEVLAHKA 350
Query: 352 VGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGD--LKAGVEVNRRDHDGHF 409
+G +V H G++S+ E++ ++ P+ +Q LN+ + + + G+ V+ R
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 410 GKEDIFKAVKTVM 422
E+I K +K +M
Sbjct: 411 AAEEIEKGLKDLM 423
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/433 (22%), Positives = 188/433 (43%), Gaps = 42/433 (9%)
Query: 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVK-------VSFFSAPGNIPRIKSSLNLTPMAD 64
++ P GH++ ++ + L+ H + F P IKS L P
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 65 IIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHY 124
+I L P V+ P L + E ++ L+ + ++ IKT+LS V F
Sbjct: 71 LIDL--PEVEPPPQELLKSPEF--YILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVS 126
Query: 125 WLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPD-GFPATSITSLDE 183
+ VG++ GI + +F + +L + N + ++ D +I +
Sbjct: 127 MID--VGNEFGIPSY---LFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISN 181
Query: 184 FVARDYL--YVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKK--P 239
V + L + K +GG Y + + + + T +++E +D + +K P
Sbjct: 182 QVPSNVLPDACFNK-DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240
Query: 240 VLLTGPLVN----PEPPSGELEERWA-KWLCKYPPKSVIYCSFGSETF-LTVDQIKELAI 293
+ GPL++ P P + + KWL + P KSV++ FGS QI+E+A+
Sbjct: 241 IYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIAL 300
Query: 294 GLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMD--RVKDRGVVHTGWVQQQLILRHES 351
GL+ +G+ F S + P GF++ ++ +G++ GW Q +L H++
Sbjct: 301 GLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMI-CGWAPQVEVLAHKA 350
Query: 352 VGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGD--LKAGVEVNRRDHDGHF 409
+G +V H G++S+ E++ ++ P+ +Q LN+ + + + G+ V+ R
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 410 GKEDIFKAVKTVM 422
E+I K +K +M
Sbjct: 411 AAEEIEKGLKDLM 423
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 317 ELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVL 376
++ R + P + + D VH WV Q ILR + +V H+G E + + ++
Sbjct: 268 QIGRKVTPAELGELPDNVEVHD-WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIA 324
Query: 377 LPLKGDQFLNSKLVAG 392
+P DQF N+ ++ G
Sbjct: 325 VPQAVDQFGNADMLQG 340
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIP 71
H+ MF A GH++P +++ +L G +V++ P ++ ++ P + +P
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAAT---GPRPVLYHSTLP 65
Query: 72 HVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLV- 130
D P ST + ++ L A+ + PQ+ + P V D T Y P V
Sbjct: 66 GPDADPEAWGST--LLDNVEPFLNDAIQAL-PQLADAYADDIPDLVLHDITSY--PARVL 120
Query: 131 GSQLGIKTVNFS 142
+ G+ V+ S
Sbjct: 121 ARRWGVPAVSLS 132
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 340 WVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQ 383
W+ Q +L H ++ H G + + EA+ V +PL DQ
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2F8S|A Chain A, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2F8S|B Chain B, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2F8T|A Chain A, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2F8T|B Chain B, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
pdb|2NUB|A Chain A, Structure Of Aquifex Aeolicus Argonuate
Length = 706
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 434 RANQKWWREFLLNGQIQDKFIADFVKDLK 462
R Q+ +R+FL +++DKFI+DF K +
Sbjct: 95 RECQELFRDFLTKTKVKDKFISDFYKKFR 123
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 153/396 (38%), Gaps = 52/396 (13%)
Query: 5 SAEADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMA- 63
SA H+ F GH++P + + +L G +VS+ ++K++ TP+
Sbjct: 7 SASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAA-GATPVVY 65
Query: 64 -DIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFT 122
I+P + + P +S M L +A+ ++ PQ++ + +P + +D
Sbjct: 66 DSILPKESNPEESWPEDQESA------MGLFLDEAVRVL-PQLEDAYADDRPDLIVYDIA 118
Query: 123 HYWLPGLVGSQLGIKTVNFS-VFSAISQAYLVVPARKLNNSLADLMKSPDGFPATSITSL 181
+ P ++G + I V S F A VPA + + AD + PA + +
Sbjct: 119 SWPAP-VLGRKWDIPFVQLSPTFVAYEGFEEDVPA--VQDPTADRGEEA-AAPAGTGDAE 174
Query: 182 DEFVARDYLY-VYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRT-QFKKP 239
+ A D L +T+ + + E G+ ++A C + RT Q K
Sbjct: 175 EGAEAEDGLVRFFTRLSA--FLEEHGVDTPATEFLIAPNRC------IVALPRTFQIKGD 226
Query: 240 VL-----LTGPLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIG 294
+ GP G W + V+ + GS +D +
Sbjct: 227 TVGDNYTFVGPTYGDRSHQG-------TWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSA 279
Query: 295 LEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGC 354
++ GL + +VL+ VD P + V VH WV Q IL S
Sbjct: 280 VD--GLDWHVVLSVGRFVD----------PADLGEVPPNVEVHQ-WVPQLDILTKAS--A 324
Query: 355 YVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLV 390
++ H+G S EA+ + +V +P +Q +N++ +
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
>pdb|1YVU|A Chain A, Crystal Structure Of A. Aeolicus Argonaute
Length = 706
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 434 RANQKWWREFLLNGQIQDKFIADFVKDLK 462
R Q+ +R+FL +++DKFI+DF K +
Sbjct: 95 RECQELFRDFLTKTKVKDKFISDFYKKFR 123
>pdb|3VQI|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg5
pdb|3VQI|B Chain B, Crystal Structure Of Kluyveromyces Marxianus Atg5
pdb|3VQI|C Chain C, Crystal Structure Of Kluyveromyces Marxianus Atg5
pdb|3VQI|D Chain D, Crystal Structure Of Kluyveromyces Marxianus Atg5
pdb|3VQI|E Chain E, Crystal Structure Of Kluyveromyces Marxianus Atg5
Length = 274
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 27/151 (17%)
Query: 68 LQIPHVDGLPPGL----DSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123
LQ+ H D P G+ D S++ + KQA ++ K ++S P DF +
Sbjct: 117 LQLCHGDKYPRGILPLVDGHSQIKDYWRHQWKQACFILNGSAKRIMSLSIP-----DFEN 171
Query: 124 YWLPGLVGSQLGIKTVNFSVFS----------AISQAYLV----VPARKLNNSLADLMK- 168
+W+ L ++ V +FS + Y V VP S+A+L+
Sbjct: 172 FWVSILSRNRSDFMAVRSKLFSMNKAKSLPVRVWTSNYAVLQPTVPVTDKELSVAELLDS 231
Query: 169 ---SPDGFPATSITSLDEFVARDYLYVYTKF 196
S DG + I +D + + +Y F
Sbjct: 232 IKLSSDGVKSVIIQGIDVSIEDNIFELYDIF 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,297,015
Number of Sequences: 62578
Number of extensions: 603644
Number of successful extensions: 1452
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 22
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)