Query 037721
Match_columns 465
No_of_seqs 132 out of 1240
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 9.4E-67 2E-71 518.6 41.8 448 8-464 4-466 (472)
2 PLN02208 glycosyltransferase f 100.0 2.9E-66 6.3E-71 513.8 38.7 436 9-464 3-440 (442)
3 PLN00414 glycosyltransferase f 100.0 1.1E-65 2.5E-70 510.2 41.0 436 9-464 3-441 (446)
4 PLN02764 glycosyltransferase f 100.0 2E-65 4.4E-70 504.9 40.7 439 9-465 4-447 (453)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.8E-65 6.1E-70 511.5 39.7 444 8-464 7-472 (477)
6 PLN02992 coniferyl-alcohol glu 100.0 2.2E-63 4.8E-68 494.8 39.5 437 9-464 4-470 (481)
7 PLN02173 UDP-glucosyl transfer 100.0 2.6E-63 5.7E-68 491.6 37.7 419 8-462 3-447 (449)
8 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.1E-62 2.4E-67 489.5 38.5 431 5-464 2-451 (451)
9 PLN02534 UDP-glycosyltransfera 100.0 3.7E-62 8E-67 488.0 39.6 444 9-463 7-486 (491)
10 PLN03015 UDP-glucosyl transfer 100.0 3.2E-62 6.9E-67 483.6 37.4 438 9-462 2-467 (470)
11 PLN02210 UDP-glucosyl transfer 100.0 8.9E-62 1.9E-66 484.9 38.7 430 1-462 1-454 (456)
12 PLN02555 limonoid glucosyltran 100.0 1.4E-61 3E-66 483.3 37.8 438 6-463 3-469 (480)
13 PLN02207 UDP-glycosyltransfera 100.0 4.1E-61 8.9E-66 477.7 38.4 435 9-464 2-466 (468)
14 PLN03007 UDP-glucosyltransfera 100.0 3.5E-61 7.5E-66 486.2 38.0 442 9-464 4-481 (482)
15 PLN02562 UDP-glycosyltransfera 100.0 3.4E-61 7.3E-66 480.3 36.8 418 10-462 6-448 (448)
16 PLN00164 glucosyltransferase; 100.0 2.2E-60 4.8E-65 477.8 37.4 437 9-464 2-474 (480)
17 PLN03004 UDP-glycosyltransfera 100.0 1.1E-60 2.4E-65 473.2 34.5 419 10-447 3-441 (451)
18 PLN02448 UDP-glycosyltransfera 100.0 1.5E-59 3.3E-64 472.0 37.4 427 6-463 6-457 (459)
19 PLN02152 indole-3-acetate beta 100.0 1.1E-59 2.4E-64 466.6 35.4 422 10-461 3-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 3.7E-59 8.1E-64 470.7 35.2 432 10-464 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 2.2E-58 4.9E-63 464.4 35.9 436 9-463 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.3E-46 2.9E-51 380.6 30.2 397 10-457 20-461 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 4.9E-44 1.1E-48 356.4 30.6 387 16-462 1-391 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 2E-47 4.3E-52 392.8 3.7 382 12-449 2-428 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 4.1E-42 9E-47 344.0 25.2 382 11-457 1-398 (401)
26 COG1819 Glycosyl transferases, 100.0 1.3E-41 2.9E-46 335.3 24.6 398 10-462 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.2E-40 4.7E-45 340.6 20.5 404 10-451 5-443 (496)
28 PRK12446 undecaprenyldiphospho 99.9 3.9E-25 8.4E-30 215.5 29.4 320 12-439 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.3E-25 5E-30 215.9 24.8 309 11-421 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 7.9E-23 1.7E-27 197.9 23.7 306 12-423 1-313 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 5.8E-22 1.3E-26 191.0 29.0 309 12-423 2-323 (357)
32 PRK00726 murG undecaprenyldiph 99.8 1.4E-18 3.1E-23 171.1 27.5 342 11-462 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9E-18 1.9E-22 165.0 26.8 328 12-444 1-338 (350)
34 TIGR01133 murG undecaprenyldip 99.7 5.1E-16 1.1E-20 152.4 25.7 324 12-445 2-336 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 2.3E-16 4.9E-21 156.2 20.4 352 11-459 6-384 (385)
36 TIGR03590 PseG pseudaminic aci 99.7 4.7E-16 1E-20 146.9 20.5 253 20-389 13-278 (279)
37 COG4671 Predicted glycosyl tra 99.7 3E-15 6.4E-20 137.8 23.8 340 9-423 8-364 (400)
38 PRK13609 diacylglycerol glucos 99.7 3.9E-15 8.5E-20 147.9 20.7 164 268-460 200-368 (380)
39 PRK13608 diacylglycerol glucos 99.6 1.2E-13 2.7E-18 137.3 21.6 166 268-462 200-370 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 2.1E-13 4.6E-18 135.5 20.7 346 11-461 2-375 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 5E-16 1.1E-20 135.6 0.0 135 272-423 1-143 (167)
42 PLN02605 monogalactosyldiacylg 99.5 2.2E-12 4.9E-17 128.1 23.7 171 264-461 200-379 (382)
43 cd03814 GT1_like_2 This family 99.4 5.5E-10 1.2E-14 109.5 27.8 158 271-461 197-363 (364)
44 TIGR03492 conserved hypothetic 99.4 2.1E-10 4.5E-15 113.8 23.6 172 269-459 204-394 (396)
45 PF03033 Glyco_transf_28: Glyc 99.3 2.2E-12 4.8E-17 108.9 5.7 117 13-147 1-133 (139)
46 cd03823 GT1_ExpE7_like This fa 99.3 7.9E-09 1.7E-13 101.0 28.7 130 270-423 190-328 (359)
47 PLN02871 UDP-sulfoquinovose:DA 99.3 1.1E-08 2.4E-13 104.5 30.5 125 272-423 264-399 (465)
48 COG3980 spsG Spore coat polysa 99.3 3.7E-10 8.1E-15 101.5 16.9 148 270-444 158-307 (318)
49 cd03794 GT1_wbuB_like This fam 99.2 1.7E-08 3.6E-13 99.6 26.0 141 270-438 219-373 (394)
50 cd03808 GT1_cap1E_like This fa 99.2 3.4E-08 7.5E-13 96.1 27.1 313 12-423 1-328 (359)
51 cd03817 GT1_UGDG_like This fam 99.1 2.2E-08 4.7E-13 98.3 24.9 130 271-423 202-342 (374)
52 cd04962 GT1_like_5 This family 99.1 7.9E-08 1.7E-12 95.0 27.9 163 272-462 198-369 (371)
53 cd03818 GT1_ExpC_like This fam 99.1 9.7E-08 2.1E-12 95.5 28.3 81 332-423 280-365 (396)
54 cd03801 GT1_YqgM_like This fam 99.1 7.4E-08 1.6E-12 93.9 26.7 342 21-460 14-372 (374)
55 cd03800 GT1_Sucrose_synthase T 99.1 3.3E-08 7.1E-13 98.6 24.6 134 272-423 221-367 (398)
56 cd03820 GT1_amsD_like This fam 99.0 1.3E-07 2.9E-12 91.5 25.5 143 272-442 179-331 (348)
57 PF04007 DUF354: Protein of un 99.0 1.5E-07 3.1E-12 90.3 24.1 109 12-145 2-113 (335)
58 cd03816 GT1_ALG1_like This fam 99.0 3.4E-07 7.4E-12 92.0 28.1 120 9-143 2-129 (415)
59 cd03798 GT1_wlbH_like This fam 99.0 3.2E-07 7E-12 89.6 27.1 348 20-463 13-376 (377)
60 PRK10307 putative glycosyl tra 99.0 2.8E-06 6.1E-11 85.4 32.3 116 333-464 284-408 (412)
61 cd03825 GT1_wcfI_like This fam 98.9 3.9E-07 8.4E-12 89.6 23.7 112 333-463 244-364 (365)
62 PRK05749 3-deoxy-D-manno-octul 98.9 4.1E-07 8.9E-12 91.9 24.0 110 334-460 303-420 (425)
63 TIGR00236 wecB UDP-N-acetylglu 98.9 1.6E-07 3.5E-12 92.8 19.6 88 333-441 255-345 (365)
64 cd03811 GT1_WabH_like This fam 98.9 6.4E-07 1.4E-11 86.8 22.9 132 270-423 188-331 (353)
65 cd03822 GT1_ecORF704_like This 98.8 1.7E-06 3.6E-11 84.8 25.1 78 332-423 246-333 (366)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 9.1E-08 2E-12 94.4 16.1 140 270-437 198-344 (363)
67 cd03795 GT1_like_4 This family 98.8 4E-06 8.6E-11 82.1 27.2 130 272-423 192-331 (357)
68 cd03799 GT1_amsK_like This is 98.8 1.8E-06 4E-11 84.4 24.1 132 270-423 178-326 (355)
69 TIGR03449 mycothiol_MshA UDP-N 98.8 6.1E-06 1.3E-10 82.7 28.1 111 333-462 283-400 (405)
70 PRK14089 ipid-A-disaccharide s 98.8 7E-07 1.5E-11 86.4 19.6 105 342-458 228-345 (347)
71 cd03796 GT1_PIG-A_like This fa 98.8 1.3E-05 2.9E-10 80.1 28.6 130 270-423 192-332 (398)
72 cd03821 GT1_Bme6_like This fam 98.8 3E-06 6.6E-11 82.9 23.6 77 332-423 261-344 (375)
73 cd03819 GT1_WavL_like This fam 98.7 8.6E-06 1.9E-10 79.8 26.3 136 270-423 184-329 (355)
74 cd03805 GT1_ALG2_like This fam 98.7 9.9E-06 2.1E-10 80.7 26.3 136 270-423 210-363 (392)
75 cd03802 GT1_AviGT4_like This f 98.7 1.7E-05 3.8E-10 76.9 26.6 127 273-423 173-307 (335)
76 TIGR02472 sucr_P_syn_N sucrose 98.7 1.3E-05 2.8E-10 81.3 26.3 78 333-423 317-405 (439)
77 PRK09922 UDP-D-galactose:(gluc 98.6 4.7E-06 1E-10 82.2 19.8 130 272-423 181-323 (359)
78 cd03807 GT1_WbnK_like This fam 98.6 2.4E-05 5.1E-10 76.3 24.1 106 333-459 251-362 (365)
79 COG1519 KdtA 3-deoxy-D-manno-o 98.6 3.8E-05 8.2E-10 74.2 24.1 346 12-464 50-418 (419)
80 TIGR03087 stp1 sugar transfera 98.6 2.2E-05 4.7E-10 78.6 23.8 77 332-423 279-361 (397)
81 PRK01021 lpxB lipid-A-disaccha 98.6 1.9E-05 4.1E-10 80.4 23.1 270 101-447 298-592 (608)
82 cd05844 GT1_like_7 Glycosyltra 98.6 1.7E-05 3.7E-10 78.1 22.4 79 332-423 244-335 (367)
83 cd03812 GT1_CapH_like This fam 98.6 1.1E-05 2.4E-10 79.1 20.8 139 271-437 192-338 (358)
84 cd04951 GT1_WbdM_like This fam 98.5 1.3E-05 2.9E-10 78.5 21.0 160 271-459 188-356 (360)
85 TIGR02468 sucrsPsyn_pln sucros 98.5 7.9E-05 1.7E-09 80.8 27.7 91 332-439 547-646 (1050)
86 TIGR03088 stp2 sugar transfera 98.5 9.1E-05 2E-09 73.3 26.3 111 334-463 256-372 (374)
87 KOG3349 Predicted glycosyltran 98.4 9.7E-07 2.1E-11 71.9 8.0 120 271-402 4-134 (170)
88 cd04955 GT1_like_6 This family 98.4 0.00027 5.9E-09 69.3 26.3 106 332-460 247-361 (363)
89 cd03809 GT1_mtfB_like This fam 98.4 0.00014 3.1E-09 71.0 23.6 158 272-457 196-363 (365)
90 PLN02275 transferase, transfer 98.4 0.00093 2E-08 66.2 29.3 75 333-422 286-371 (371)
91 COG0763 LpxB Lipid A disacchar 98.4 9.3E-05 2E-09 70.7 20.5 211 237-462 155-380 (381)
92 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 3.1E-05 6.7E-10 76.3 17.5 131 270-423 201-338 (365)
93 PF02684 LpxB: Lipid-A-disacch 98.3 9.8E-05 2.1E-09 72.0 20.5 330 13-445 1-355 (373)
94 TIGR02149 glgA_Coryne glycogen 98.3 0.00043 9.3E-09 68.8 25.0 118 334-464 261-387 (388)
95 PF02350 Epimerase_2: UDP-N-ac 98.2 1.4E-06 2.9E-11 85.0 5.4 131 268-423 178-317 (346)
96 cd03792 GT1_Trehalose_phosphor 98.2 0.0011 2.3E-08 65.7 26.1 110 333-463 252-371 (372)
97 PRK15179 Vi polysaccharide bio 98.2 0.001 2.3E-08 70.4 26.3 113 332-460 573-690 (694)
98 PLN02846 digalactosyldiacylgly 98.2 0.0017 3.7E-08 65.4 26.2 72 336-423 287-362 (462)
99 TIGR02470 sucr_synth sucrose s 98.1 0.014 3E-07 62.3 32.5 79 333-422 619-707 (784)
100 cd03804 GT1_wbaZ_like This fam 98.0 0.00017 3.7E-09 70.7 15.8 125 273-423 197-325 (351)
101 cd03791 GT1_Glycogen_synthase_ 98.0 0.0012 2.7E-08 67.6 21.9 133 272-423 297-441 (476)
102 PRK00654 glgA glycogen synthas 98.0 0.0024 5.1E-08 65.3 23.6 134 271-423 282-427 (466)
103 cd03806 GT1_ALG11_like This fa 98.0 0.0053 1.2E-07 61.8 25.6 76 333-423 305-391 (419)
104 PLN02949 transferase, transfer 98.0 0.015 3.3E-07 59.1 28.7 113 332-462 334-455 (463)
105 cd04950 GT1_like_1 Glycosyltra 97.9 0.0072 1.6E-07 59.9 25.4 110 332-464 253-372 (373)
106 COG5017 Uncharacterized conser 97.9 0.00023 4.9E-09 57.2 11.3 144 273-438 2-156 (161)
107 PRK15427 colanic acid biosynth 97.8 0.00093 2E-08 67.0 15.9 167 271-463 222-405 (406)
108 PRK15484 lipopolysaccharide 1, 97.7 0.0017 3.7E-08 64.5 17.3 112 333-462 257-376 (380)
109 PF00534 Glycos_transf_1: Glyc 97.7 0.00063 1.4E-08 59.2 12.2 142 270-438 14-166 (172)
110 PLN00142 sucrose synthase 97.7 0.022 4.8E-07 60.9 24.8 57 355-422 670-730 (815)
111 PRK10125 putative glycosyl tra 97.7 0.021 4.5E-07 57.2 23.7 139 287-463 257-404 (405)
112 TIGR02095 glgA glycogen/starch 97.6 0.022 4.9E-07 58.3 24.1 133 272-423 292-436 (473)
113 COG0381 WecB UDP-N-acetylgluco 97.6 0.018 3.9E-07 55.6 21.0 105 333-458 262-369 (383)
114 PF13844 Glyco_transf_41: Glyc 97.6 0.0015 3.3E-08 65.2 14.2 172 269-462 283-465 (468)
115 TIGR02918 accessory Sec system 97.6 0.035 7.5E-07 57.1 24.4 103 332-443 375-483 (500)
116 cd04949 GT1_gtfA_like This fam 97.6 0.0084 1.8E-07 59.2 19.5 81 333-423 261-344 (372)
117 cd04946 GT1_AmsK_like This fam 97.6 0.0019 4.1E-08 64.8 14.9 132 271-423 230-376 (407)
118 PLN02501 digalactosyldiacylgly 97.4 0.063 1.4E-06 56.1 23.7 74 334-423 602-680 (794)
119 cd01635 Glycosyltransferase_GT 97.4 0.0083 1.8E-07 54.0 15.4 47 333-381 161-215 (229)
120 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0025 5.4E-08 52.9 8.6 126 272-423 3-134 (135)
121 PLN02316 synthase/transferase 97.2 0.2 4.3E-06 55.3 24.9 81 334-423 901-997 (1036)
122 COG1817 Uncharacterized protei 97.1 0.072 1.6E-06 49.7 17.7 103 21-145 10-114 (346)
123 TIGR02193 heptsyl_trn_I lipopo 96.9 0.034 7.4E-07 53.7 15.1 44 12-55 1-46 (319)
124 PRK09814 beta-1,6-galactofuran 96.9 0.0055 1.2E-07 59.7 9.5 110 333-459 207-331 (333)
125 cd03813 GT1_like_3 This family 96.8 0.044 9.5E-07 56.2 15.3 145 271-437 293-449 (475)
126 COG3914 Spy Predicted O-linked 96.3 0.062 1.3E-06 54.2 12.5 126 269-402 428-562 (620)
127 PHA01633 putative glycosyl tra 96.2 0.26 5.7E-06 47.7 15.7 82 333-423 201-306 (335)
128 PF06722 DUF1205: Protein of u 96.0 0.012 2.5E-07 45.7 4.5 63 257-324 27-94 (97)
129 KOG4626 O-linked N-acetylgluco 96.0 0.069 1.5E-06 54.2 10.7 123 269-402 757-889 (966)
130 PF13477 Glyco_trans_4_2: Glyc 95.8 0.09 1.9E-06 43.7 9.7 102 12-143 1-107 (139)
131 PHA01630 putative group 1 glyc 95.5 0.62 1.3E-05 45.3 15.5 111 339-462 196-329 (331)
132 PF13579 Glyco_trans_4_4: Glyc 95.5 0.016 3.4E-07 49.1 3.9 96 25-143 5-104 (160)
133 PRK14098 glycogen synthase; Pr 95.3 0.21 4.5E-06 51.4 12.2 130 272-422 308-449 (489)
134 PRK10017 colanic acid biosynth 95.2 0.61 1.3E-05 46.8 14.6 100 345-462 323-423 (426)
135 PRK15490 Vi polysaccharide bio 94.6 0.59 1.3E-05 48.1 12.6 65 332-403 454-523 (578)
136 PF01975 SurE: Survival protei 94.1 0.17 3.6E-06 44.9 6.7 120 12-144 2-134 (196)
137 PF13524 Glyco_trans_1_2: Glyc 94.0 0.6 1.3E-05 35.6 9.1 82 358-458 9-91 (92)
138 cd03789 GT1_LPS_heptosyltransf 93.5 3.5 7.7E-05 38.8 15.3 44 12-55 1-46 (279)
139 PRK10964 ADP-heptose:LPS hepto 93.5 3.1 6.7E-05 40.2 15.1 44 11-54 1-46 (322)
140 COG0438 RfaG Glycosyltransfera 93.1 4.3 9.4E-05 38.3 15.6 132 272-423 200-341 (381)
141 PF13439 Glyco_transf_4: Glyco 93.0 0.44 9.6E-06 40.7 7.7 102 20-146 11-112 (177)
142 PRK10422 lipopolysaccharide co 92.2 9.7 0.00021 37.2 16.8 46 10-55 5-52 (352)
143 PRK10916 ADP-heptose:LPS hepto 92.1 7.8 0.00017 37.8 15.9 102 12-140 2-106 (348)
144 TIGR02201 heptsyl_trn_III lipo 92.0 7.8 0.00017 37.7 15.7 105 12-140 1-108 (344)
145 COG0496 SurE Predicted acid ph 92.0 0.71 1.5E-05 42.3 7.6 102 23-144 12-126 (252)
146 COG4370 Uncharacterized protei 91.7 0.84 1.8E-05 42.6 7.8 97 337-448 299-398 (412)
147 TIGR02400 trehalose_OtsA alpha 91.2 2.1 4.6E-05 43.5 11.1 105 337-462 340-455 (456)
148 TIGR02195 heptsyl_trn_II lipop 90.8 10 0.00022 36.7 15.2 101 12-139 1-104 (334)
149 PLN02939 transferase, transfer 90.7 6.9 0.00015 43.1 14.7 82 333-423 837-930 (977)
150 PF12000 Glyco_trans_4_3: Gkyc 90.3 3.1 6.6E-05 36.0 9.6 94 36-143 1-96 (171)
151 PF06258 Mito_fiss_Elm1: Mitoc 89.5 17 0.00036 34.9 15.0 59 342-403 221-283 (311)
152 PRK14099 glycogen synthase; Pr 88.5 10 0.00023 38.9 13.7 40 9-48 2-47 (485)
153 cd03788 GT1_TPS Trehalose-6-Ph 86.8 2.6 5.6E-05 43.0 8.1 104 337-461 345-459 (460)
154 COG1618 Predicted nucleotide k 86.8 3.2 6.9E-05 35.3 7.0 103 10-122 5-109 (179)
155 PLN03063 alpha,alpha-trehalose 86.5 6 0.00013 43.3 11.1 105 339-463 362-477 (797)
156 PF08660 Alg14: Oligosaccharid 85.8 1.8 3.8E-05 37.5 5.4 114 16-143 3-129 (170)
157 PRK02261 methylaspartate mutas 84.3 2.6 5.7E-05 35.0 5.6 45 8-52 1-45 (137)
158 PRK13932 stationary phase surv 83.9 12 0.00025 34.8 10.1 58 10-69 5-62 (257)
159 PRK13933 stationary phase surv 83.0 14 0.00031 34.2 10.3 44 24-68 13-56 (253)
160 COG0003 ArsA Predicted ATPase 82.8 9.4 0.0002 36.8 9.4 41 12-52 3-44 (322)
161 PRK00346 surE 5'(3')-nucleotid 82.6 7.6 0.00017 35.9 8.4 100 23-143 12-124 (250)
162 PF02606 LpxK: Tetraacyldisacc 82.3 28 0.0006 33.7 12.5 104 16-136 43-149 (326)
163 PF05159 Capsule_synth: Capsul 80.4 12 0.00027 34.9 9.3 43 334-379 184-226 (269)
164 TIGR00087 surE 5'/3'-nucleotid 80.3 9.5 0.00021 35.1 8.1 46 23-69 12-57 (244)
165 TIGR03713 acc_sec_asp1 accesso 79.8 6.8 0.00015 40.6 7.8 73 333-423 409-487 (519)
166 PRK13935 stationary phase surv 79.7 20 0.00042 33.2 9.9 45 23-68 12-56 (253)
167 cd01423 MGS_CPS_I_III Methylgl 79.4 11 0.00024 30.1 7.5 94 15-140 4-106 (116)
168 COG1066 Sms Predicted ATP-depe 79.2 2.5 5.4E-05 41.5 4.0 81 13-121 96-176 (456)
169 COG0859 RfaF ADP-heptose:LPS h 78.9 59 0.0013 31.5 13.8 104 11-140 2-107 (334)
170 PRK13931 stationary phase surv 78.5 14 0.0003 34.4 8.6 101 24-143 13-129 (261)
171 cd03793 GT1_Glycogen_synthase_ 77.8 9.4 0.0002 39.6 8.0 77 342-423 467-551 (590)
172 PF02441 Flavoprotein: Flavopr 76.5 2.5 5.5E-05 34.6 3.0 45 11-56 1-45 (129)
173 cd02067 B12-binding B12 bindin 76.5 4.7 0.0001 32.4 4.5 38 12-49 1-38 (119)
174 PRK13934 stationary phase surv 76.5 27 0.00058 32.5 9.9 45 23-68 12-56 (266)
175 TIGR02398 gluc_glyc_Psyn gluco 76.1 52 0.0011 33.7 12.8 108 335-463 364-482 (487)
176 PF00731 AIRC: AIR carboxylase 74.3 22 0.00048 29.9 8.0 140 272-446 2-148 (150)
177 PF12146 Hydrolase_4: Putative 74.1 9.4 0.0002 28.2 5.2 35 10-44 15-49 (79)
178 PF04464 Glyphos_transf: CDP-G 72.7 9.8 0.00021 37.4 6.6 112 333-458 252-368 (369)
179 cd00550 ArsA_ATPase Oxyanion-t 72.1 18 0.0004 33.5 7.9 38 13-50 3-40 (254)
180 KOG2825 Putative arsenite-tran 71.3 17 0.00036 33.4 6.9 44 9-52 17-61 (323)
181 smart00851 MGS MGS-like domain 71.0 12 0.00027 28.3 5.4 79 27-139 2-89 (90)
182 KOG0853 Glycosyltransferase [C 70.7 19 0.00041 36.6 7.9 67 357-439 376-442 (495)
183 PF02951 GSH-S_N: Prokaryotic 70.6 6.9 0.00015 31.6 4.0 39 11-49 1-42 (119)
184 COG1703 ArgK Putative periplas 70.3 50 0.0011 31.3 10.0 42 11-52 52-93 (323)
185 COG4394 Uncharacterized protei 70.3 73 0.0016 29.9 10.8 113 334-460 239-367 (370)
186 cd01424 MGS_CPS_II Methylglyox 70.0 14 0.00029 29.2 5.7 84 22-140 10-100 (110)
187 COG0299 PurN Folate-dependent 69.4 56 0.0012 28.8 9.5 121 284-442 63-186 (200)
188 PF02310 B12-binding: B12 bind 69.3 9.5 0.00021 30.5 4.7 38 11-48 1-38 (121)
189 cd00532 MGS-like MGS-like doma 68.7 10 0.00023 30.1 4.7 85 23-141 10-105 (112)
190 KOG2941 Beta-1,4-mannosyltrans 67.9 1.2E+02 0.0027 29.4 28.1 128 8-148 10-142 (444)
191 PF01075 Glyco_transf_9: Glyco 67.6 12 0.00025 34.4 5.6 99 269-377 104-208 (247)
192 COG0052 RpsB Ribosomal protein 66.8 25 0.00054 32.1 7.1 33 114-147 157-191 (252)
193 PF07429 Glyco_transf_56: 4-al 66.4 1.3E+02 0.0029 29.2 12.8 82 333-423 245-332 (360)
194 TIGR02919 accessory Sec system 65.5 25 0.00054 35.6 7.7 93 333-444 328-426 (438)
195 COG0801 FolK 7,8-dihydro-6-hyd 64.9 24 0.00053 30.0 6.3 35 272-306 3-37 (160)
196 PF06925 MGDG_synth: Monogalac 62.6 18 0.00039 31.1 5.4 43 101-143 77-124 (169)
197 PF04413 Glycos_transf_N: 3-De 62.4 27 0.00059 30.7 6.5 100 12-143 22-126 (186)
198 PRK06718 precorrin-2 dehydroge 61.6 98 0.0021 27.5 10.1 152 263-447 5-165 (202)
199 PRK08760 replicative DNA helic 61.2 37 0.00081 34.8 8.2 40 13-52 232-272 (476)
200 COG3660 Predicted nucleoside-d 61.1 1.1E+02 0.0025 28.4 10.1 78 291-377 189-271 (329)
201 PRK06067 flagellar accessory p 59.6 20 0.00042 32.7 5.4 41 12-52 27-67 (234)
202 PF04127 DFP: DNA / pantothena 59.4 15 0.00033 32.2 4.4 37 12-48 5-53 (185)
203 PRK14501 putative bifunctional 59.1 27 0.00059 38.0 7.2 111 336-463 345-462 (726)
204 TIGR02370 pyl_corrinoid methyl 58.1 25 0.00053 31.2 5.6 45 8-52 82-126 (197)
205 cd02070 corrinoid_protein_B12- 57.9 23 0.0005 31.5 5.4 41 9-49 81-121 (201)
206 TIGR00715 precor6x_red precorr 57.9 31 0.00067 32.1 6.4 79 27-141 12-98 (256)
207 PRK05986 cob(I)alamin adenolsy 57.6 1.4E+02 0.0029 26.4 11.5 100 8-123 20-125 (191)
208 PRK10867 signal recognition pa 56.6 72 0.0016 32.2 9.1 42 11-52 101-143 (433)
209 PRK02155 ppnK NAD(+)/NADH kina 56.6 43 0.00093 31.8 7.2 52 349-423 63-118 (291)
210 PRK08305 spoVFB dipicolinate s 56.4 17 0.00037 32.2 4.2 45 10-54 5-49 (196)
211 COG2874 FlaH Predicted ATPases 56.2 1E+02 0.0022 27.8 8.8 88 19-124 37-134 (235)
212 PRK07313 phosphopantothenoylcy 56.0 1.4E+02 0.003 26.1 10.4 52 371-423 113-179 (182)
213 PRK07773 replicative DNA helic 56.0 51 0.0011 36.8 8.7 41 13-53 220-261 (886)
214 PRK09165 replicative DNA helic 55.9 49 0.0011 34.2 8.0 41 13-53 220-275 (497)
215 COG2185 Sbm Methylmalonyl-CoA 55.3 24 0.00052 29.4 4.6 44 9-52 11-54 (143)
216 COG2894 MinD Septum formation 54.2 23 0.00051 31.9 4.5 36 12-47 3-40 (272)
217 TIGR02015 BchY chlorophyllide 53.9 52 0.0011 33.1 7.7 90 11-141 286-379 (422)
218 PRK13010 purU formyltetrahydro 53.6 1.5E+02 0.0032 28.2 10.2 114 290-441 160-275 (289)
219 PRK06321 replicative DNA helic 53.1 68 0.0015 32.8 8.5 40 13-52 229-269 (472)
220 PRK06849 hypothetical protein; 52.9 57 0.0012 32.4 7.9 35 10-48 4-38 (389)
221 COG0041 PurE Phosphoribosylcar 52.6 1.4E+02 0.0031 25.2 11.6 141 272-446 4-150 (162)
222 TIGR02852 spore_dpaB dipicolin 52.6 20 0.00043 31.5 4.0 41 12-52 2-42 (187)
223 cd00561 CobA_CobO_BtuR ATP:cor 52.6 1.5E+02 0.0032 25.3 11.4 96 12-123 4-105 (159)
224 cd07039 TPP_PYR_POX Pyrimidine 52.5 1.5E+02 0.0032 25.3 10.0 25 354-378 66-96 (164)
225 PRK07313 phosphopantothenoylcy 52.5 18 0.00039 31.7 3.7 43 12-55 3-45 (182)
226 PRK05647 purN phosphoribosylgl 52.1 89 0.0019 27.8 8.1 103 11-144 2-111 (200)
227 PRK13011 formyltetrahydrofolat 51.5 1.9E+02 0.0042 27.3 10.7 115 290-442 156-272 (286)
228 cd01121 Sms Sms (bacterial rad 51.4 64 0.0014 31.9 7.7 41 13-53 85-125 (372)
229 PF06506 PrpR_N: Propionate ca 51.2 25 0.00055 30.5 4.5 69 349-423 32-123 (176)
230 PRK02797 4-alpha-L-fucosyltran 50.7 1.5E+02 0.0032 28.4 9.5 76 337-421 211-291 (322)
231 cd02071 MM_CoA_mut_B12_BD meth 50.4 33 0.00072 27.6 4.8 39 12-50 1-39 (122)
232 COG1484 DnaC DNA replication p 50.3 17 0.00038 33.7 3.4 46 10-55 105-150 (254)
233 TIGR03878 thermo_KaiC_2 KaiC d 49.8 1.5E+02 0.0032 27.5 9.7 38 13-50 39-76 (259)
234 PRK05636 replicative DNA helic 49.0 73 0.0016 33.0 8.0 40 13-52 268-308 (505)
235 PLN02470 acetolactate synthase 48.6 93 0.002 32.9 9.0 92 276-378 2-109 (585)
236 TIGR03446 mycothiol_Mca mycoth 48.1 1.3E+02 0.0029 28.3 9.0 19 101-119 109-127 (283)
237 cd02069 methionine_synthase_B1 47.9 46 0.00099 30.0 5.6 43 9-51 87-129 (213)
238 PRK04885 ppnK inorganic polyph 47.4 27 0.00059 32.6 4.3 51 350-423 36-92 (265)
239 cd01965 Nitrogenase_MoFe_beta_ 47.0 1.1E+02 0.0025 30.7 9.0 35 103-141 361-395 (428)
240 TIGR00959 ffh signal recogniti 46.8 1.6E+02 0.0035 29.7 9.9 41 12-52 101-142 (428)
241 PRK12342 hypothetical protein; 46.2 20 0.00044 33.2 3.2 40 103-143 99-144 (254)
242 PF14871 GHL6: Hypothetical gl 45.4 1E+02 0.0023 25.3 6.9 90 24-121 43-132 (132)
243 PF00551 Formyl_trans_N: Formy 44.9 69 0.0015 27.9 6.2 106 11-144 1-110 (181)
244 TIGR02655 circ_KaiC circadian 44.8 94 0.002 31.9 8.1 88 13-123 266-363 (484)
245 TIGR03880 KaiC_arch_3 KaiC dom 44.4 71 0.0015 28.7 6.5 98 13-123 19-117 (224)
246 TIGR00460 fmt methionyl-tRNA f 44.2 83 0.0018 30.2 7.2 33 11-48 1-33 (313)
247 TIGR00655 PurU formyltetrahydr 44.2 2E+02 0.0043 27.2 9.5 104 288-422 149-254 (280)
248 PF02142 MGS: MGS-like domain 44.1 11 0.00023 28.9 0.9 84 27-139 2-94 (95)
249 PF07355 GRDB: Glycine/sarcosi 44.0 27 0.00059 33.7 3.7 50 93-143 60-119 (349)
250 TIGR00708 cobA cob(I)alamin ad 43.5 2.2E+02 0.0047 24.7 12.2 97 10-123 5-107 (173)
251 PF01210 NAD_Gly3P_dh_N: NAD-d 43.5 20 0.00043 30.4 2.5 32 12-48 1-32 (157)
252 PRK03359 putative electron tra 43.5 23 0.0005 32.9 3.1 40 103-143 102-147 (256)
253 PRK13789 phosphoribosylamine-- 43.3 42 0.00091 33.8 5.2 36 10-50 4-39 (426)
254 TIGR02237 recomb_radB DNA repa 43.0 2E+02 0.0043 25.4 9.2 36 13-48 15-50 (209)
255 cd00984 DnaB_C DnaB helicase C 42.8 1E+02 0.0023 27.9 7.4 41 13-53 16-57 (242)
256 PRK04328 hypothetical protein; 42.5 2.7E+02 0.006 25.5 10.5 104 12-123 25-138 (249)
257 PRK05920 aromatic acid decarbo 41.9 36 0.00077 30.4 3.9 44 11-55 4-47 (204)
258 TIGR00421 ubiX_pad polyprenyl 41.9 28 0.00061 30.4 3.3 41 13-54 2-42 (181)
259 COG1663 LpxK Tetraacyldisaccha 41.5 45 0.00097 32.1 4.7 35 16-50 55-89 (336)
260 PRK13011 formyltetrahydrofolat 41.0 1.5E+02 0.0032 28.1 8.1 105 7-143 86-195 (286)
261 cd01980 Chlide_reductase_Y Chl 40.8 1.1E+02 0.0024 30.8 7.7 33 106-142 343-375 (416)
262 cd01421 IMPCH Inosine monophos 40.7 68 0.0015 28.1 5.3 39 24-69 10-48 (187)
263 PRK14077 pnk inorganic polypho 40.7 39 0.00084 32.0 4.2 53 348-423 63-119 (287)
264 PLN02948 phosphoribosylaminoim 40.1 3.5E+02 0.0077 28.5 11.6 144 270-447 410-559 (577)
265 PF10093 DUF2331: Uncharacteri 40.1 3.8E+02 0.0082 26.5 11.1 90 283-378 192-289 (374)
266 PF02585 PIG-L: GlcNAc-PI de-N 40.0 1.8E+02 0.0039 23.3 7.7 22 100-121 87-108 (128)
267 PRK12595 bifunctional 3-deoxy- 39.9 3.3E+02 0.0071 26.8 10.6 129 273-423 120-250 (360)
268 PRK06029 3-octaprenyl-4-hydrox 39.9 37 0.00079 29.8 3.6 43 12-55 3-46 (185)
269 PRK14099 glycogen synthase; Pr 39.8 47 0.001 34.2 5.0 79 336-423 354-446 (485)
270 TIGR02113 coaC_strep phosphopa 39.2 33 0.00073 29.8 3.3 42 12-54 2-43 (177)
271 PF07015 VirC1: VirC1 protein; 39.2 75 0.0016 28.9 5.6 41 13-53 4-45 (231)
272 PRK13768 GTPase; Provisional 39.2 1.1E+02 0.0023 28.4 6.8 37 13-49 5-41 (253)
273 PF02374 ArsA_ATPase: Anion-tr 39.1 45 0.00097 31.9 4.4 42 12-53 2-44 (305)
274 cd03466 Nitrogenase_NifN_2 Nit 38.9 1.6E+02 0.0036 29.6 8.7 35 103-141 362-396 (429)
275 PRK05562 precorrin-2 dehydroge 38.7 3E+02 0.0066 24.9 9.7 151 263-447 20-180 (223)
276 COG1154 Dxs Deoxyxylulose-5-ph 38.6 2.9E+02 0.0063 29.0 10.1 52 358-423 565-623 (627)
277 PHA02754 hypothetical protein; 38.5 60 0.0013 22.1 3.5 20 430-449 13-32 (67)
278 PRK13982 bifunctional SbtC-lik 38.4 56 0.0012 33.4 5.1 40 9-48 255-306 (475)
279 TIGR02195 heptsyl_trn_II lipop 38.2 2E+02 0.0044 27.6 9.0 100 10-143 174-278 (334)
280 COG2910 Putative NADH-flavin r 38.0 29 0.00063 30.3 2.6 35 12-50 2-36 (211)
281 TIGR00147 lipid kinase, YegS/R 37.7 98 0.0021 29.2 6.6 26 354-379 60-91 (293)
282 PF10835 DUF2573: Protein of u 37.7 1.6E+02 0.0035 21.5 6.4 50 412-464 9-72 (82)
283 TIGR01283 nifE nitrogenase mol 37.5 2.3E+02 0.0049 28.9 9.5 35 103-141 385-419 (456)
284 PRK01231 ppnK inorganic polyph 37.4 1.3E+02 0.0029 28.5 7.3 52 349-423 62-117 (295)
285 PF07991 IlvN: Acetohydroxy ac 37.2 43 0.00093 28.6 3.5 50 10-69 4-55 (165)
286 TIGR01470 cysG_Nterm siroheme 37.0 3E+02 0.0066 24.5 12.0 148 270-446 10-164 (205)
287 PRK13054 lipid kinase; Reviewe 37.0 1.1E+02 0.0025 29.0 6.9 26 354-379 59-92 (300)
288 PRK06027 purU formyltetrahydro 36.7 2.3E+02 0.005 26.8 8.8 83 8-121 87-173 (286)
289 PRK01911 ppnK inorganic polyph 36.6 47 0.001 31.5 4.1 53 348-423 63-119 (292)
290 PRK04539 ppnK inorganic polyph 36.4 48 0.001 31.6 4.1 53 348-423 67-123 (296)
291 TIGR01285 nifN nitrogenase mol 36.3 1.6E+02 0.0035 29.7 8.1 86 11-141 312-397 (432)
292 TIGR02700 flavo_MJ0208 archaeo 35.7 50 0.0011 30.2 4.0 44 13-56 2-47 (234)
293 PF10820 DUF2543: Protein of u 35.7 1.1E+02 0.0024 21.7 4.7 40 416-463 38-77 (81)
294 PRK06027 purU formyltetrahydro 35.6 2.9E+02 0.0062 26.2 9.2 115 289-441 155-271 (286)
295 PRK06249 2-dehydropantoate 2-r 35.5 80 0.0017 30.2 5.6 42 10-57 5-46 (313)
296 PRK06988 putative formyltransf 35.5 2.3E+02 0.0049 27.2 8.7 96 10-144 2-108 (312)
297 PRK11914 diacylglycerol kinase 35.4 70 0.0015 30.5 5.2 25 355-379 68-96 (306)
298 KOG3339 Predicted glycosyltran 35.4 1.9E+02 0.0042 25.3 7.0 26 11-37 39-64 (211)
299 PF09001 DUF1890: Domain of un 35.4 33 0.00071 28.2 2.4 37 20-56 9-45 (139)
300 PRK13604 luxD acyl transferase 35.2 76 0.0016 30.4 5.2 36 9-44 35-70 (307)
301 PRK06732 phosphopantothenate-- 35.1 79 0.0017 28.8 5.2 32 14-47 18-49 (229)
302 cd07038 TPP_PYR_PDC_IPDC_like 35.1 81 0.0018 26.9 5.0 27 353-379 61-93 (162)
303 TIGR00355 purH phosphoribosyla 35.1 1E+02 0.0023 31.5 6.3 87 24-122 10-100 (511)
304 COG2109 BtuR ATP:corrinoid ade 34.9 3.2E+02 0.007 24.1 10.4 101 9-124 27-133 (198)
305 PF07801 DUF1647: Protein of u 34.3 1.4E+02 0.0031 24.9 6.0 62 8-69 57-120 (142)
306 cd02034 CooC The accessory pro 34.1 92 0.002 24.9 4.9 37 12-48 1-37 (116)
307 PRK02645 ppnK inorganic polyph 34.1 87 0.0019 30.0 5.5 29 349-379 57-89 (305)
308 PRK02649 ppnK inorganic polyph 34.0 47 0.001 31.7 3.7 52 349-423 68-123 (305)
309 cd03818 GT1_ExpC_like This fam 33.9 1.1E+02 0.0025 30.1 6.7 25 285-309 10-34 (396)
310 cd00861 ProRS_anticodon_short 33.8 79 0.0017 23.6 4.3 35 11-45 2-38 (94)
311 COG0859 RfaF ADP-heptose:LPS h 33.8 1.3E+02 0.0027 29.2 6.7 99 10-145 175-280 (334)
312 PRK05579 bifunctional phosphop 33.6 4.1E+02 0.0088 26.6 10.3 140 270-423 7-182 (399)
313 TIGR03877 thermo_KaiC_1 KaiC d 33.3 3.7E+02 0.008 24.4 10.8 104 12-123 23-136 (237)
314 TIGR02699 archaeo_AfpA archaeo 33.2 55 0.0012 28.4 3.6 35 21-55 9-45 (174)
315 PRK03378 ppnK inorganic polyph 33.1 53 0.0012 31.2 3.8 53 348-423 62-118 (292)
316 PF06745 KaiC: KaiC; InterPro 32.7 1E+02 0.0022 27.7 5.6 95 12-124 21-126 (226)
317 PRK06456 acetolactate synthase 32.7 1.9E+02 0.0041 30.4 8.3 24 355-378 72-101 (572)
318 COG4088 Predicted nucleotide k 32.6 51 0.0011 29.5 3.2 34 13-46 4-37 (261)
319 TIGR01162 purE phosphoribosyla 32.5 2.1E+02 0.0046 24.3 6.9 134 275-446 3-146 (156)
320 COG0467 RAD55 RecA-superfamily 32.5 82 0.0018 29.2 5.0 44 12-55 25-68 (260)
321 TIGR01917 gly_red_sel_B glycin 32.3 52 0.0011 32.7 3.6 48 94-142 57-114 (431)
322 TIGR01918 various_sel_PB selen 32.2 53 0.0011 32.7 3.7 48 94-142 57-114 (431)
323 PF00282 Pyridoxal_deC: Pyrido 32.2 1E+02 0.0023 30.4 5.9 70 352-423 104-190 (373)
324 COG2159 Predicted metal-depend 31.9 4.5E+02 0.0098 24.9 11.6 62 283-361 141-202 (293)
325 TIGR00639 PurN phosphoribosylg 31.9 3.3E+02 0.0071 23.9 8.4 81 11-121 1-87 (190)
326 PRK12311 rpsB 30S ribosomal pr 31.9 43 0.00094 32.3 3.0 34 113-147 152-187 (326)
327 PF05693 Glycogen_syn: Glycoge 31.9 1.4E+02 0.003 31.4 6.7 95 342-444 462-566 (633)
328 PLN02939 transferase, transfer 31.9 98 0.0021 34.5 6.0 44 6-49 477-526 (977)
329 PF02492 cobW: CobW/HypB/UreG, 31.6 1.2E+02 0.0026 26.2 5.6 85 13-123 3-94 (178)
330 COG3958 Transketolase, C-termi 31.4 2.5E+02 0.0054 26.6 7.6 108 271-421 194-311 (312)
331 PRK05595 replicative DNA helic 31.4 1.6E+02 0.0036 29.8 7.3 41 13-53 204-245 (444)
332 cd02065 B12-binding_like B12 b 31.3 97 0.0021 24.6 4.7 40 13-52 2-41 (125)
333 PRK07206 hypothetical protein; 31.3 1.1E+02 0.0023 30.7 6.0 32 12-48 4-35 (416)
334 PRK00039 ruvC Holliday junctio 31.3 64 0.0014 27.7 3.7 45 100-145 48-107 (164)
335 PRK03372 ppnK inorganic polyph 31.3 65 0.0014 30.8 4.1 53 348-423 71-127 (306)
336 PRK11823 DNA repair protein Ra 31.2 74 0.0016 32.3 4.8 41 13-53 83-123 (446)
337 PRK00005 fmt methionyl-tRNA fo 31.2 4E+02 0.0087 25.4 9.6 94 11-144 1-109 (309)
338 COG0059 IlvC Ketol-acid reduct 31.2 72 0.0016 30.3 4.2 50 10-69 18-69 (338)
339 cd01452 VWA_26S_proteasome_sub 31.0 2.5E+02 0.0053 24.7 7.4 59 11-69 108-173 (187)
340 PF02844 GARS_N: Phosphoribosy 30.9 96 0.0021 24.1 4.2 36 103-139 52-90 (100)
341 TIGR01007 eps_fam capsular exo 30.9 94 0.002 27.4 5.0 38 11-48 17-56 (204)
342 TIGR00416 sms DNA repair prote 30.7 79 0.0017 32.2 4.8 41 13-53 97-137 (454)
343 PF02702 KdpD: Osmosensitive K 30.7 85 0.0018 28.0 4.3 38 10-47 5-42 (211)
344 PF01372 Melittin: Melittin; 30.5 8.3 0.00018 21.1 -1.1 17 360-376 1-17 (26)
345 PRK02231 ppnK inorganic polyph 30.4 76 0.0016 29.8 4.3 57 344-423 37-97 (272)
346 TIGR01501 MthylAspMutase methy 30.2 1.3E+02 0.0027 24.9 5.1 42 11-52 2-43 (134)
347 PLN03064 alpha,alpha-trehalose 30.0 2.1E+02 0.0046 32.1 8.2 105 339-463 446-561 (934)
348 PRK01175 phosphoribosylformylg 29.7 4.7E+02 0.01 24.4 9.9 36 10-48 3-38 (261)
349 PRK12921 2-dehydropantoate 2-r 29.4 80 0.0017 29.9 4.5 41 12-57 2-42 (305)
350 PRK13185 chlL protochlorophyll 29.3 94 0.002 28.9 4.9 36 12-47 4-39 (270)
351 TIGR01281 DPOR_bchL light-inde 29.3 91 0.002 28.9 4.8 34 12-45 2-35 (268)
352 cd02032 Bchl_like This family 29.2 89 0.0019 29.0 4.7 36 12-47 2-37 (267)
353 cd01840 SGNH_hydrolase_yrhL_li 29.2 89 0.0019 26.0 4.3 37 270-307 51-87 (150)
354 PF11071 DUF2872: Protein of u 29.1 1.5E+02 0.0032 24.3 5.0 34 343-378 66-107 (141)
355 PF05728 UPF0227: Uncharacteri 29.1 62 0.0013 28.4 3.3 46 103-149 47-95 (187)
356 PRK13337 putative lipid kinase 29.0 1.7E+02 0.0037 27.8 6.6 26 354-379 60-91 (304)
357 CHL00072 chlL photochlorophyll 28.9 1E+02 0.0022 29.3 5.0 38 12-49 2-39 (290)
358 PF01470 Peptidase_C15: Pyrogl 28.8 1.1E+02 0.0025 27.1 5.0 26 11-36 1-28 (202)
359 COG3195 Uncharacterized protei 28.6 2.8E+02 0.0061 23.7 6.8 95 342-445 64-164 (176)
360 TIGR00521 coaBC_dfp phosphopan 28.5 68 0.0015 31.9 3.9 45 10-55 3-47 (390)
361 PRK14092 2-amino-4-hydroxy-6-h 28.5 1.4E+02 0.0031 25.6 5.3 29 270-298 7-35 (163)
362 PRK10037 cell division protein 28.4 88 0.0019 28.8 4.4 35 13-47 4-39 (250)
363 PRK09302 circadian clock prote 28.3 63 0.0014 33.5 3.8 42 12-53 275-316 (509)
364 PF14336 DUF4392: Domain of un 28.3 52 0.0011 31.2 2.9 47 10-56 40-94 (291)
365 PRK05579 bifunctional phosphop 28.3 86 0.0019 31.3 4.5 46 9-55 5-50 (399)
366 PF03720 UDPG_MGDP_dh_C: UDP-g 28.2 71 0.0015 25.0 3.2 34 20-53 10-45 (106)
367 PRK12315 1-deoxy-D-xylulose-5- 28.1 4.4E+02 0.0095 27.9 10.0 52 357-422 524-580 (581)
368 PRK07710 acetolactate synthase 27.9 2.9E+02 0.0063 29.0 8.7 25 354-378 81-111 (571)
369 PF09314 DUF1972: Domain of un 27.9 1.3E+02 0.0027 26.5 5.0 46 21-69 16-62 (185)
370 PRK06522 2-dehydropantoate 2-r 27.8 70 0.0015 30.2 3.8 41 12-57 2-43 (304)
371 PF03853 YjeF_N: YjeF-related 27.7 1.3E+02 0.0028 25.9 5.0 37 8-45 23-59 (169)
372 PF01695 IstB_IS21: IstB-like 27.7 60 0.0013 28.2 3.0 45 10-54 47-91 (178)
373 PLN02935 Bifunctional NADH kin 27.7 84 0.0018 32.2 4.3 51 349-423 262-317 (508)
374 TIGR00345 arsA arsenite-activa 27.6 1.9E+02 0.0042 27.2 6.7 26 28-53 3-28 (284)
375 PF02572 CobA_CobO_BtuR: ATP:c 27.5 4.1E+02 0.0088 23.0 8.1 98 10-123 3-106 (172)
376 PRK08322 acetolactate synthase 27.4 87 0.0019 32.7 4.7 25 354-378 66-96 (547)
377 PRK09620 hypothetical protein; 27.4 90 0.002 28.4 4.2 21 27-47 32-52 (229)
378 cd01983 Fer4_NifH The Fer4_Nif 27.4 1.4E+02 0.003 21.9 4.8 33 13-45 2-34 (99)
379 PRK04761 ppnK inorganic polyph 27.4 45 0.00098 30.7 2.2 27 350-378 26-56 (246)
380 PRK06276 acetolactate synthase 27.3 93 0.002 32.9 4.9 25 354-378 66-96 (586)
381 COG1090 Predicted nucleoside-d 27.3 4.3E+02 0.0094 24.9 8.4 24 28-51 12-35 (297)
382 PF08323 Glyco_transf_5: Starc 27.2 49 0.0011 30.4 2.5 24 25-48 20-43 (245)
383 PLN02331 phosphoribosylglycina 27.2 4E+02 0.0086 23.8 8.2 39 104-143 69-108 (207)
384 PF04244 DPRP: Deoxyribodipyri 27.0 59 0.0013 29.5 2.9 26 23-48 47-72 (224)
385 cd07035 TPP_PYR_POX_like Pyrim 26.9 1.7E+02 0.0036 24.4 5.6 26 354-379 62-93 (155)
386 PRK00881 purH bifunctional pho 26.3 1.8E+02 0.0039 30.0 6.4 39 24-69 14-52 (513)
387 PRK08125 bifunctional UDP-gluc 26.3 4.7E+02 0.01 28.1 10.1 40 105-145 67-107 (660)
388 PRK05973 replicative DNA helic 26.3 1.2E+02 0.0027 27.8 4.8 41 13-53 67-107 (237)
389 CHL00076 chlB photochlorophyll 26.2 57 0.0012 33.8 3.0 36 103-142 364-399 (513)
390 COG2120 Uncharacterized protei 26.2 1.3E+02 0.0028 27.6 5.0 40 5-45 5-45 (237)
391 PRK03501 ppnK inorganic polyph 26.2 86 0.0019 29.3 3.9 52 350-423 40-96 (264)
392 cd01976 Nitrogenase_MoFe_alpha 26.1 63 0.0014 32.5 3.2 36 103-142 359-394 (421)
393 COG2210 Peroxiredoxin family p 26.0 1.4E+02 0.0031 24.6 4.6 42 14-55 7-48 (137)
394 TIGR00228 ruvC crossover junct 26.0 90 0.0019 26.5 3.6 46 99-145 43-103 (156)
395 TIGR03646 YtoQ_fam YtoQ family 25.7 3.6E+02 0.0077 22.2 6.6 34 343-378 69-110 (144)
396 PF03308 ArgK: ArgK protein; 25.7 5.4E+02 0.012 24.0 8.8 118 10-141 29-150 (266)
397 TIGR03264 met_CoM_red_C methyl 25.7 77 0.0017 27.3 3.1 33 13-45 36-69 (194)
398 PF10649 DUF2478: Protein of u 25.6 4.2E+02 0.0092 22.6 8.3 119 14-146 2-134 (159)
399 PLN02263 serine decarboxylase 25.6 1.1E+02 0.0024 31.2 4.8 81 337-420 138-224 (470)
400 cd01425 RPS2 Ribosomal protein 25.6 69 0.0015 28.3 3.0 30 22-51 40-69 (193)
401 PF02558 ApbA: Ketopantoate re 25.6 59 0.0013 27.0 2.5 30 28-57 11-40 (151)
402 PRK13057 putative lipid kinase 25.5 93 0.002 29.3 4.1 30 348-379 49-82 (287)
403 TIGR00745 apbA_panE 2-dehydrop 25.4 57 0.0012 30.7 2.7 29 29-57 5-33 (293)
404 PF02571 CbiJ: Precorrin-6x re 25.4 1.4E+02 0.0029 27.7 5.0 103 27-141 118-225 (249)
405 PTZ00318 NADH dehydrogenase-li 25.4 99 0.0022 31.1 4.5 40 5-49 5-44 (424)
406 cd01141 TroA_d Periplasmic bin 25.3 60 0.0013 28.1 2.6 36 106-142 62-99 (186)
407 PF00070 Pyr_redox: Pyridine n 25.1 1E+02 0.0022 22.4 3.4 23 26-48 10-32 (80)
408 PRK14098 glycogen synthase; Pr 25.1 1.2E+02 0.0027 31.1 5.2 38 11-48 6-49 (489)
409 PF13450 NAD_binding_8: NAD(P) 25.1 89 0.0019 22.1 3.0 21 27-47 8-28 (68)
410 PRK11199 tyrA bifunctional cho 25.0 2.8E+02 0.006 27.4 7.5 33 10-47 98-131 (374)
411 PF12695 Abhydrolase_5: Alpha/ 24.9 1.5E+02 0.0033 23.8 5.0 33 14-46 2-34 (145)
412 PF02826 2-Hacid_dh_C: D-isome 24.6 1.6E+02 0.0035 25.4 5.2 108 269-420 36-143 (178)
413 PRK13234 nifH nitrogenase redu 24.6 1.4E+02 0.0031 28.3 5.2 36 12-47 6-41 (295)
414 PRK13869 plasmid-partitioning 24.4 1.2E+02 0.0026 30.4 4.8 39 10-48 120-160 (405)
415 COG3516 Predicted component of 24.3 1.7E+02 0.0036 25.0 4.8 57 392-458 92-148 (169)
416 TIGR01162 purE phosphoribosyla 24.3 4.5E+02 0.0097 22.4 10.9 103 283-422 37-141 (156)
417 cd07037 TPP_PYR_MenD Pyrimidin 24.1 59 0.0013 27.8 2.2 24 355-378 64-93 (162)
418 KOG3062 RNA polymerase II elon 24.1 1.4E+02 0.0029 27.3 4.4 36 12-47 3-39 (281)
419 PF05225 HTH_psq: helix-turn-h 23.9 1.1E+02 0.0024 19.7 3.0 25 410-440 1-26 (45)
420 PHA02519 plasmid partition pro 23.8 1.4E+02 0.0031 29.6 5.2 36 10-45 105-142 (387)
421 TIGR00064 ftsY signal recognit 23.7 2E+02 0.0043 27.0 5.9 39 12-50 74-112 (272)
422 PRK02910 light-independent pro 23.7 71 0.0015 33.2 3.1 35 104-142 353-387 (519)
423 COG1737 RpiR Transcriptional r 23.7 2.6E+02 0.0057 26.2 6.8 87 262-383 125-216 (281)
424 PRK14075 pnk inorganic polypho 23.6 1E+02 0.0023 28.6 4.0 51 350-423 42-93 (256)
425 PF01380 SIS: SIS domain SIS d 23.6 1.5E+02 0.0033 23.5 4.6 36 20-55 62-97 (131)
426 PRK01185 ppnK inorganic polyph 23.5 95 0.0021 29.1 3.7 52 349-423 52-104 (271)
427 TIGR02482 PFKA_ATP 6-phosphofr 23.2 70 0.0015 30.5 2.7 38 346-383 86-127 (301)
428 TIGR00725 conserved hypothetic 23.1 1.1E+02 0.0024 26.0 3.7 39 341-379 82-123 (159)
429 COG0552 FtsY Signal recognitio 22.9 1.8E+02 0.004 28.1 5.4 43 10-52 139-181 (340)
430 PRK06835 DNA replication prote 22.7 87 0.0019 30.3 3.3 43 11-53 184-226 (329)
431 PRK08335 translation initiatio 22.7 84 0.0018 29.5 3.1 18 127-145 204-221 (275)
432 PRK00771 signal recognition pa 22.7 1.8E+02 0.0039 29.5 5.7 42 10-51 95-136 (437)
433 cd02037 MRP-like MRP (Multiple 22.4 1.5E+02 0.0032 25.2 4.5 32 16-47 6-37 (169)
434 PRK13194 pyrrolidone-carboxyla 22.4 2.2E+02 0.0048 25.5 5.6 25 12-36 2-28 (208)
435 TIGR02898 spore_YhcN_YlaJ spor 22.3 3.9E+02 0.0084 22.8 6.7 37 428-464 120-156 (158)
436 PRK00652 lpxK tetraacyldisacch 22.3 1.6E+02 0.0035 28.4 5.0 39 12-50 51-91 (325)
437 cd03115 SRP The signal recogni 22.3 1.9E+02 0.0042 24.5 5.2 39 13-51 3-41 (173)
438 COG3367 Uncharacterized conser 22.3 5.5E+02 0.012 24.8 8.2 46 12-57 150-196 (339)
439 PRK13982 bifunctional SbtC-lik 22.2 1.2E+02 0.0025 31.1 4.2 45 10-55 70-114 (475)
440 cd00860 ThrRS_anticodon ThrRS 21.8 1.8E+02 0.0039 21.3 4.4 34 12-46 3-36 (91)
441 COG0299 PurN Folate-dependent 21.7 3.8E+02 0.0082 23.8 6.6 88 12-129 2-96 (200)
442 PF02075 RuvC: Crossover junct 21.7 1.1E+02 0.0024 25.7 3.4 47 99-146 44-105 (149)
443 cd01981 Pchlide_reductase_B Pc 21.6 89 0.0019 31.5 3.3 36 104-143 361-396 (430)
444 TIGR01278 DPOR_BchB light-inde 21.5 75 0.0016 32.9 2.8 36 104-143 355-390 (511)
445 TIGR03453 partition_RepA plasm 21.5 1.4E+02 0.0031 29.6 4.7 39 10-48 103-143 (387)
446 PRK06222 ferredoxin-NADP(+) re 21.5 2E+02 0.0044 27.0 5.5 38 11-50 99-136 (281)
447 COG0504 PyrG CTP synthase (UTP 21.4 1.7E+02 0.0037 29.8 5.0 38 12-49 2-42 (533)
448 PRK13059 putative lipid kinase 21.4 3.1E+02 0.0068 25.9 6.9 26 354-379 59-90 (295)
449 PRK03708 ppnK inorganic polyph 21.4 59 0.0013 30.6 1.8 51 350-423 58-111 (277)
450 PRK13055 putative lipid kinase 21.4 2.6E+02 0.0057 27.0 6.4 25 355-379 63-93 (334)
451 COG1052 LdhA Lactate dehydroge 21.3 4.7E+02 0.01 25.2 8.0 63 339-420 190-252 (324)
452 TIGR02012 tigrfam_recA protein 21.2 2.1E+02 0.0046 27.6 5.6 38 14-51 59-96 (321)
453 cd02033 BchX Chlorophyllide re 21.2 2.3E+02 0.0049 27.5 5.8 40 10-49 30-70 (329)
454 PRK06270 homoserine dehydrogen 21.2 4.4E+02 0.0094 25.6 7.9 59 342-401 80-150 (341)
455 cd02040 NifH NifH gene encodes 21.0 1.6E+02 0.0035 27.2 4.8 36 12-47 3-38 (270)
456 PF06180 CbiK: Cobalt chelatas 21.0 1.3E+02 0.0028 28.1 4.0 38 271-308 2-42 (262)
457 PRK14619 NAD(P)H-dependent gly 21.0 1.4E+02 0.0031 28.4 4.4 35 9-48 3-37 (308)
458 PF10727 Rossmann-like: Rossma 21.0 1.5E+02 0.0033 24.1 4.0 43 1-48 1-43 (127)
459 cd06559 Endonuclease_V Endonuc 20.9 1.6E+02 0.0035 26.4 4.4 38 103-141 81-127 (208)
460 PRK08155 acetolactate synthase 20.9 2E+02 0.0043 30.2 5.9 25 354-378 79-109 (564)
461 TIGR00639 PurN phosphoribosylg 20.9 5.8E+02 0.012 22.4 9.1 102 290-422 70-173 (190)
462 PRK06487 glycerate dehydrogena 20.8 4.5E+02 0.0098 25.2 7.9 60 270-362 149-208 (317)
463 PF06564 YhjQ: YhjQ protein; 20.8 1.6E+02 0.0035 27.1 4.5 34 13-46 4-38 (243)
464 PF00448 SRP54: SRP54-type pro 20.8 1.8E+02 0.0039 25.7 4.7 38 13-50 4-41 (196)
465 PRK06546 pyruvate dehydrogenas 20.8 6.7E+02 0.015 26.4 9.8 59 355-423 459-518 (578)
466 PRK06719 precorrin-2 dehydroge 20.7 1.7E+02 0.0037 24.8 4.4 33 10-47 13-45 (157)
467 PRK08057 cobalt-precorrin-6x r 20.7 4.8E+02 0.01 24.1 7.6 89 12-142 4-99 (248)
468 cd03412 CbiK_N Anaerobic cobal 20.5 1.8E+02 0.0039 23.6 4.3 37 271-307 2-40 (127)
469 PF00933 Glyco_hydro_3: Glycos 20.4 1.6E+02 0.0034 28.0 4.6 74 330-423 225-298 (299)
470 cd00983 recA RecA is a bacter 20.3 2.7E+02 0.0058 26.9 6.1 40 12-51 56-96 (325)
471 PRK13010 purU formyltetrahydro 20.3 6.1E+02 0.013 24.0 8.4 83 8-121 91-177 (289)
472 PF03641 Lysine_decarbox: Poss 20.1 3.4E+02 0.0074 22.1 6.0 44 336-379 39-92 (133)
473 PRK04148 hypothetical protein; 20.1 2.2E+02 0.0048 23.5 4.7 32 10-47 17-48 (134)
474 PRK12767 carbamoyl phosphate s 20.1 4.7E+02 0.01 24.9 7.9 32 12-49 3-36 (326)
475 PHA02857 monoglyceride lipase; 20.1 1.9E+02 0.004 26.7 5.0 38 9-46 23-60 (276)
476 cd05014 SIS_Kpsf KpsF-like pro 20.1 2.1E+02 0.0045 22.8 4.7 36 19-54 55-90 (128)
477 TIGR00288 conserved hypothetic 20.1 2.1E+02 0.0045 24.4 4.7 41 21-69 115-156 (160)
478 PF06418 CTP_synth_N: CTP synt 20.1 1.4E+02 0.003 27.8 3.8 37 12-48 2-41 (276)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=9.4e-67 Score=518.57 Aligned_cols=448 Identities=33% Similarity=0.612 Sum_probs=343.0
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhccc-CCCCCeeEEEccCCCCCCCCCCCCCCCCC
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSL-NLTPMADIIPLQIPHVDGLPPGLDSTSEM 86 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (465)
..+.||+++|+|++||++|++.||+.|++||+.|||++++.+...+.+.. .....++++.+|+|..++++.+.+...+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~ 83 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDV 83 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccccc
Confidence 34679999999999999999999999999999999999998876665321 11234899999988767887654433334
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccC---Ccc
Q 037721 87 TPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLN---NSL 163 (465)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~---~~~ 163 (465)
+......+....+...+.+.+++++.+++|||+|.+..|+..+ |+++|||+++|+++++..+.++.++..... ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~v-A~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 162 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSI-AAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRS 162 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHH-HHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCC
Confidence 3222234445556677888888888889999999999999999 999999999999999888776553321110 000
Q ss_pred --cccCCCCCCCCC-CccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCe
Q 037721 164 --ADLMKSPDGFPA-TSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPV 240 (465)
Q Consensus 164 --~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 240 (465)
......+..+|. ..+. ++..+++.+.............+.+.......++++++|||++||+.+++.++..+++++
T Consensus 163 ~~~~~~~~p~~~P~~~~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v 241 (472)
T PLN02670 163 TAEDFTVVPPWVPFESNIV-FRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPI 241 (472)
T ss_pred ccccccCCCCcCCCCcccc-ccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCe
Confidence 111111222332 1111 222233332210010111122333333445678999999999999999999987655689
Q ss_pred EeeccCCCCC--CCCC-c-----chhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 037721 241 LLTGPLVNPE--PPSG-E-----LEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNV 312 (465)
Q Consensus 241 ~~vGp~~~~~--~~~~-~-----~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~ 312 (465)
+.|||+ .+. .... . ..+++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|||+++.....
T Consensus 242 ~~VGPl-~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~ 320 (472)
T PLN02670 242 IPIGFL-PPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGT 320 (472)
T ss_pred EEEecC-CccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 999999 652 1111 0 115688999999888999999999999999999999999999999999999863211
Q ss_pred CCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhh
Q 037721 313 DGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAG 392 (465)
Q Consensus 313 ~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~ 392 (465)
. .+....+|++|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 321 ~--~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~ 398 (472)
T PLN02670 321 T--QNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG 398 (472)
T ss_pred c--cchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH
Confidence 0 01134699999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 037721 393 DLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 393 ~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
. |+|+.+...+.++.++.++|+++|+++|. ++++++||+||+++++.+++.+...+++++|++.++.+
T Consensus 399 ~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~---~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 399 K-KLGLEVPRDERDGSFTSDSVAESVRLAMV---DDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred c-CeeEEeeccccCCcCcHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 6 99999976432346899999999999998 33446899999999999999999999999999999876
No 2
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-66 Score=513.84 Aligned_cols=436 Identities=38% Similarity=0.743 Sum_probs=339.4
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
.+.||+++|+|++||++|+++||+.|++|||+|||++++.+...+.+.+...+.+++..+++|..++++.+.+...+...
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 46799999999999999999999999999999999999988777765542223577887775533567665443323333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCC
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMK 168 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (465)
.....+....+...+.+.+++++.++||||+|+ +.|+..+ |+++|||++.|+++++..+. +.+.+. .....
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D~-~~wa~~v-A~e~giP~~~f~~~~a~~~~-~~~~~~------~~~~~ 153 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRALRPDLIFFDF-AQWIPEM-AKEHMIKSVSYIIVSATTIA-HTHVPG------GKLGV 153 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECC-cHhHHHH-HHHhCCCEEEEEhhhHHHHH-HHccCc------cccCC
Confidence 344455556667788899999888999999995 7899999 99999999999999988665 333321 00111
Q ss_pred CCCCCCCCccCCCChhhhhhhhhhhhcCCCCchh-hhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 169 SPDGFPATSITSLDEFVARDYLYVYTKFNGGPSV-YERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
+.+++|...+. ++..+++.+ ......+.. ..++.+....++.+++|||.+||+.+++++...+.++++.|||+
T Consensus 154 ~~pglp~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl- 227 (442)
T PLN02208 154 PPPGYPSSKVL-FRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPM- 227 (442)
T ss_pred CCCCCCCcccc-cCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeec-
Confidence 22344431111 223333321 011111121 22233455679999999999999999999987776789999999
Q ss_pred CCCCC-CCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhh
Q 037721 248 NPEPP-SGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGF 326 (465)
Q Consensus 248 ~~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~ 326 (465)
.+.+. ...++.++.+|||.++++++|||||||...++.+++.+++.+++..+.+|+|+++...+.. +....+|++|
T Consensus 228 ~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~---~~~~~lp~~f 304 (442)
T PLN02208 228 FPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS---TVQEGLPEGF 304 (442)
T ss_pred ccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc---chhhhCCHHH
Confidence 65442 2346788999999998889999999999988999999999999989999999998642110 0234689999
Q ss_pred hhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCC
Q 037721 327 MDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHD 406 (465)
Q Consensus 327 ~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (465)
.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.++..+ +
T Consensus 305 ~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-~ 383 (442)
T PLN02208 305 EERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK-T 383 (442)
T ss_pred HHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999887559999997532 2
Q ss_pred CccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 037721 407 GHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 407 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
+.+++++|+++|+++|++ ++++.+++|++++++++.+.+.|++.+++++|+++++++
T Consensus 384 ~~~~~~~l~~ai~~~m~~-~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 384 GWFSKESLSNAIKSVMDK-DSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred CcCcHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 359999999999999972 114567899999999999999999999999999999875
No 3
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-65 Score=510.19 Aligned_cols=436 Identities=37% Similarity=0.742 Sum_probs=338.7
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
++.||+++|+|++||++|+++||+.|+++|++|||++++.+...+...+...+.++|..+++|..++++.+.+...+...
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 36799999999999999999999999999999999999988766654432223488877776655678766443334433
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCC
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMK 168 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (465)
.....+....+...+.+.++++..+|||||+|+ ++|+..+ |+++|||++.|+++++..+.++.++.. +...
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~v-A~~lgIP~~~F~~~~a~~~~~~~~~~~-------~~~~ 153 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEM-AKEFGIKSVNYQIISAACVAMVLAPRA-------ELGF 153 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHH-HHHhCCCEEEEecHHHHHHHHHhCcHh-------hcCC
Confidence 333445555666778888888888899999996 8999999 999999999999999988877665311 1111
Q ss_pred CCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCCC
Q 037721 169 SPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLVN 248 (465)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~ 248 (465)
+++++|...+. ++..+.. +..+... ....+.+..+....++.+++|||.+||+.+++.++..++++++.|||+ .
T Consensus 154 ~~pg~p~~~~~-~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl-~ 227 (446)
T PLN00414 154 PPPDYPLSKVA-LRGHDAN-VCSLFAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPM-L 227 (446)
T ss_pred CCCCCCCCcCc-Cchhhcc-cchhhcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEccc-C
Confidence 23344431111 1111111 1111110 112333334456678999999999999999999887655679999999 6
Q ss_pred CCCCC---CcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChh
Q 037721 249 PEPPS---GELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPG 325 (465)
Q Consensus 249 ~~~~~---~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~ 325 (465)
+.... .....++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|++....... +....+|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~---~~~~~lp~~ 304 (446)
T PLN00414 228 PEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS---TVQEALPEG 304 (446)
T ss_pred CCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc---cchhhCChh
Confidence 53321 112356889999999999999999999999999999999999999999999998642211 023469999
Q ss_pred hhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCC
Q 037721 326 FMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 326 ~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+.+.+
T Consensus 305 f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~- 383 (446)
T PLN00414 305 FEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED- 383 (446)
T ss_pred HHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999975569999997532
Q ss_pred CCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 037721 406 DGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
++.+++++|+++++++|.+ +++..+++|++++++++.+.+.||++..+++|+++++++
T Consensus 384 ~~~~~~~~i~~~v~~~m~~-~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 384 SGWFSKESLRDTVKSVMDK-DSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENE 441 (446)
T ss_pred CCccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 2358999999999999972 124467799999999999998888677799999998765
No 4
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2e-65 Score=504.94 Aligned_cols=439 Identities=39% Similarity=0.742 Sum_probs=335.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCC--eeEEEccCCCCCCCCCCCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPM--ADIIPLQIPHVDGLPPGLDSTSEM 86 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 86 (465)
.+.||+++|+|++||++|++.||+.|+++|+.|||++++.+...+.+....... +.+.++| ..++++.+.+...+.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p--~~~glp~g~e~~~~~ 81 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVP--HVDGLPVGTETVSEI 81 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECC--CcCCCCCcccccccC
Confidence 367999999999999999999999999999999999999876655442100112 4555555 335777664444444
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCccccc
Q 037721 87 TPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADL 166 (465)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (465)
+......+....+...+.+.+++++.+|||||+|+ ..|+..+ |+++|||++.|+++++..+.++.... ...
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~v-A~~~gIP~~~f~~~~a~~~~~~~~~~-------~~~ 152 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEV-ARDFGLKTVKYVVVSASTIASMLVPG-------GEL 152 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHH-HHHhCCCEEEEEcHHHHHHHHHhccc-------ccC
Confidence 43333445555556778889999888899999996 8999999 99999999999999998887765311 011
Q ss_pred CCCCCCCCCCccCCCChhhhhhhhhhhh-cCCCCc-hhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeec
Q 037721 167 MKSPDGFPATSITSLDEFVARDYLYVYT-KFNGGP-SVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTG 244 (465)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 244 (465)
..+.+++|...+. ++..++..+..... ...... ..+.++......++.+++|||.+||+.++++++...+++++.||
T Consensus 153 ~~~~pglp~~~v~-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VG 231 (453)
T PLN02764 153 GVPPPGYPSSKVL-LRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTG 231 (453)
T ss_pred CCCCCCCCCCccc-CcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEec
Confidence 1122344421111 22222222111000 000011 23333434556788999999999999999998775456899999
Q ss_pred cCCCCCCCC-CcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCC
Q 037721 245 PLVNPEPPS-GELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLP 323 (465)
Q Consensus 245 p~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp 323 (465)
|+ .+.+.. .....++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|+++...... +....+|
T Consensus 232 PL-~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~---~~~~~lp 307 (453)
T PLN02764 232 PV-FPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSS---TIQEALP 307 (453)
T ss_pred cC-ccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc---chhhhCC
Confidence 99 654311 123567999999999999999999999999999999999999999999999998642211 0235699
Q ss_pred hhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 324 PGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 324 ~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
++|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+...
T Consensus 308 ~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~ 387 (453)
T PLN02764 308 EGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVARE 387 (453)
T ss_pred cchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997655999988542
Q ss_pred CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhC
Q 037721 404 DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKALA 465 (465)
Q Consensus 404 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (465)
+ .+.++.++|+++|+++|.+ ++++.+++|++++++++.++++|++.+++++|++++++++
T Consensus 388 ~-~~~~~~e~i~~av~~vm~~-~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 388 E-TGWFSKESLRDAINSVMKR-DSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred c-CCccCHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 1 1258999999999999972 1245678999999999999999999999999999998763
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.8e-65 Score=511.53 Aligned_cols=444 Identities=25% Similarity=0.437 Sum_probs=339.7
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCc
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMT 87 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (465)
..+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.......+.+++..+|+|..+++|.+.+...+.+
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~ 86 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLP 86 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcc
Confidence 45789999999999999999999999999999999999999887765432112358888998877677887766554544
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCc--c
Q 037721 88 PHMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNS--L 163 (465)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~--~ 163 (465)
......+........+.+.+++++. +|+|||+|.+.+|+..+ |+++|||++.|++++++.+..++++....+.. .
T Consensus 87 ~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dV-A~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~ 165 (477)
T PLN02863 87 PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNL-ACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINP 165 (477)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHH-HHHcCCCEEEEeccCHHHHHHHHHHhhcccccccc
Confidence 4444445555556677777777763 57999999999999999 99999999999999999988777654322110 0
Q ss_pred cc--cCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCC-CCe
Q 037721 164 AD--LMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFK-KPV 240 (465)
Q Consensus 164 ~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~ 240 (465)
.+ ......++|+. .. ++..+++.+.............+.+.......++.+++|||++||+.++++++..+. +++
T Consensus 166 ~~~~~~~~~~~iPg~-~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v 243 (477)
T PLN02863 166 DDQNEILSFSKIPNC-PK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRV 243 (477)
T ss_pred cccccccccCCCCCC-CC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCe
Confidence 01 01112234540 00 333333332211001111112222222334567889999999999999999987654 579
Q ss_pred EeeccCCCCCCC-C-------C---cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCC
Q 037721 241 LLTGPLVNPEPP-S-------G---ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFP 309 (465)
Q Consensus 241 ~~vGp~~~~~~~-~-------~---~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 309 (465)
+.|||+ .+... . . ...+++.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+++..
T Consensus 244 ~~IGPL-~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~ 322 (477)
T PLN02863 244 WAVGPI-LPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEP 322 (477)
T ss_pred EEeCCC-cccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 999999 64321 0 0 0235799999999889999999999999999999999999999999999999854
Q ss_pred CCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHH
Q 037721 310 PNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKL 389 (465)
Q Consensus 310 ~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~ 389 (465)
.+... ....+|++|.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 323 ~~~~~---~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~ 399 (477)
T PLN02863 323 VNEES---DYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASL 399 (477)
T ss_pred ccccc---chhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHH
Confidence 32110 134689999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHHHHHHHHHHHhh
Q 037721 390 VAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 390 v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~~ 464 (465)
+++.||+|+++...+ .+.++.+++.++|.++|.. +++||+||+++++.+++ +|++.+++++|++.++++
T Consensus 400 v~~~~gvG~~~~~~~-~~~~~~~~v~~~v~~~m~~-----~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 400 LVDELKVAVRVCEGA-DTVPDSDELARVFMESVSE-----NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHhhceeEEeccCC-CCCcCHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 876669999996421 2357899999999999932 79999999999999655 488999999999999875
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.2e-63 Score=494.77 Aligned_cols=437 Identities=25% Similarity=0.367 Sum_probs=325.7
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCc
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLS-LHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMT 87 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (465)
.+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+.+.....+.+++..+|.|..++++.... +
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~---~-- 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSA---H-- 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCc---c--
Confidence 467999999999999999999999998 7999999999998765543321001248999998765545542111 1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccc-cCCccc
Q 037721 88 PHMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARK-LNNSLA 164 (465)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~~~~~~ 164 (465)
....+........+.+++++++. +|+|||+|.+++|+..+ |+++|||++.|+++++..++++.+.+.. ......
T Consensus 79 --~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dV-A~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 79 --VVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCL-GGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred --HHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHH-HHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 11122233334557777777764 68999999999999999 9999999999999999887765543211 110000
Q ss_pred -ccCCCCCCCCCCccCCCChhhhhhhhh-hhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhh--C----
Q 037721 165 -DLMKSPDGFPATSITSLDEFVARDYLY-VYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQ--F---- 236 (465)
Q Consensus 165 -~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~--~---- 236 (465)
..+..+..+|+ +......++.. +.......+..+.+.......++.+++|||.+||+.++++++.. .
T Consensus 156 ~~~~~~~~~iPg-----~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~ 230 (481)
T PLN02992 156 HTVQRKPLAMPG-----CEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVA 230 (481)
T ss_pred cccCCCCcccCC-----CCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccccc
Confidence 01111234555 22122233332 11111112333444445567899999999999999999988642 1
Q ss_pred CCCeEeeccCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCC---
Q 037721 237 KKPVLLTGPLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVD--- 313 (465)
Q Consensus 237 ~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~--- 313 (465)
.++++.|||+ .+.........++.+|||.++++++|||||||...++.+++.+++.+|+.++.+|||+++...+..
T Consensus 231 ~~~v~~VGPl-~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~ 309 (481)
T PLN02992 231 RVPVYPIGPL-CRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACS 309 (481)
T ss_pred CCceEEecCc-cCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccc
Confidence 2469999999 653221223456999999998899999999999999999999999999999999999997432100
Q ss_pred ---------CcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccch
Q 037721 314 ---------GQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQF 384 (465)
Q Consensus 314 ---------~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~ 384 (465)
..++....+|+||.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 389 (481)
T PLN02992 310 AYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQN 389 (481)
T ss_pred ccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhH
Confidence 00001335899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc------CCchHHHHHHHH
Q 037721 385 LNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN------GQIQDKFIADFV 458 (465)
Q Consensus 385 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~------~~~~~~~~~~~~ 458 (465)
.||+++++.||+|+.++.. ++.++.++|.++|+++|. +++++++|++++++++++++ +|++.+++++|+
T Consensus 390 ~na~~~~~~~g~gv~~~~~--~~~~~~~~l~~av~~vm~---~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v 464 (481)
T PLN02992 390 MNAALLSDELGIAVRSDDP--KEVISRSKIEALVRKVMV---EEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVT 464 (481)
T ss_pred HHHHHHHHHhCeeEEecCC--CCcccHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 9999996334999999752 125899999999999998 44567999999999998873 466788999999
Q ss_pred HHHHhh
Q 037721 459 KDLKAL 464 (465)
Q Consensus 459 ~~l~~~ 464 (465)
+++++.
T Consensus 465 ~~~~~~ 470 (481)
T PLN02992 465 KECQRF 470 (481)
T ss_pred HHHHHH
Confidence 988763
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.6e-63 Score=491.65 Aligned_cols=419 Identities=22% Similarity=0.369 Sum_probs=318.2
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCC-CCCCCCC
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPG-LDSTSEM 86 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 86 (465)
+++.||+++|+|++||++|+++||+.|+.+|+.|||++++.+...+.... .+.++++.+| +++|.+ .+...+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~--~~~i~~~~ip----dglp~~~~~~~~~- 75 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP--SSPISIATIS----DGYDQGGFSSAGS- 75 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC--CCCEEEEEcC----CCCCCcccccccC-
Confidence 34679999999999999999999999999999999999998765543211 2349999997 677653 222211
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhhc----CC-cEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCC
Q 037721 87 TPHMAELLKQALDLMQPQIKTLLSQL----KP-HFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNN 161 (465)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~~----~p-D~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (465)
...++........+.+.+++++. +| +|||+|.+.+|+..+ |+++|||++.|+++++..+..++.....
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dV-A~elgIP~v~F~~~~a~~~~~~~~~~~~--- 148 (449)
T PLN02173 76 ---VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDL-AREFGLAAAPFFTQSCAVNYINYLSYIN--- 148 (449)
T ss_pred ---HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHH-HHHhCCCEEEEechHHHHHHHHHhHHhc---
Confidence 11233333334556777777653 55 999999999999999 9999999999999888776655432110
Q ss_pred cccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeE
Q 037721 162 SLADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVL 241 (465)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 241 (465)
..+...+.+++|. ++..+++.+.............+.+..+....++.+++|||++||+.+++.++.. .+++
T Consensus 149 -~~~~~~~~pg~p~-----l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~ 220 (449)
T PLN02173 149 -NGSLTLPIKDLPL-----LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVL 220 (449)
T ss_pred -cCCccCCCCCCCC-----CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCee
Confidence 0112222334443 3333333322100000111122333344567889999999999999999988653 3699
Q ss_pred eeccCCCCCC-------C-CC--------cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEE
Q 037721 242 LTGPLVNPEP-------P-SG--------ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLV 305 (465)
Q Consensus 242 ~vGp~~~~~~-------~-~~--------~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~ 305 (465)
.|||+ .+.. . .. ...+++.+||+.++++++|||||||....+.+++.+++.+| .+.+|+|+
T Consensus 221 ~VGPl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWv 297 (449)
T PLN02173 221 TIGPT-VPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWV 297 (449)
T ss_pred EEccc-CchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEE
Confidence 99999 6421 0 00 11235889999999899999999999999999999999999 78889999
Q ss_pred EcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchh
Q 037721 306 LNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFL 385 (465)
Q Consensus 306 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~ 385 (465)
++.. ....+|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 298 vr~~--------~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 369 (449)
T PLN02173 298 VRAS--------EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPM 369 (449)
T ss_pred Eecc--------chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchH
Confidence 9853 23458889988876788888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH----cCCchHHHHHHHHHHH
Q 037721 386 NSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLL----NGQIQDKFIADFVKDL 461 (465)
Q Consensus 386 na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~~~~l 461 (465)
||+++++.||+|+.+...+.++.++.++|.++|+++|. +++.+++|+||++++++++ ++|++.+++++|++++
T Consensus 370 Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~---~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 370 NAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVME---GEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred HHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 99999998899999975432335799999999999997 4556899999999999998 5688899999999987
Q ss_pred H
Q 037721 462 K 462 (465)
Q Consensus 462 ~ 462 (465)
+
T Consensus 447 ~ 447 (449)
T PLN02173 447 Q 447 (449)
T ss_pred c
Confidence 5
No 8
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-62 Score=489.54 Aligned_cols=431 Identities=23% Similarity=0.324 Sum_probs=314.3
Q ss_pred CCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 037721 5 SAEADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTS 84 (465)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (465)
+....+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...... ...++++..+| +++|.+....
T Consensus 2 ~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~---~~~~i~~~~ip----~glp~~~~~~- 73 (451)
T PLN02410 2 EEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD---DFTDFQFVTIP----ESLPESDFKN- 73 (451)
T ss_pred CcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccccc---CCCCeEEEeCC----CCCCcccccc-
Confidence 334467799999999999999999999999999999999999976421111 01248888887 5666531111
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhhc------CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccc
Q 037721 85 EMTPHMAELLKQALDLMQPQIKTLLSQL------KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARK 158 (465)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 158 (465)
.. ...++....+.....+.+++++. +++|||+|.+..|+..+ |+++|||++.|++++++.+..+.++...
T Consensus 74 -~~--~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dv-A~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 74 -LG--PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAA-AKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred -cC--HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHH-HHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 11 11222222223344455555432 46999999999999999 9999999999999999887765543211
Q ss_pred cC--C--ccccc-CCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHH
Q 037721 159 LN--N--SLADL-MKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVR 233 (465)
Q Consensus 159 ~~--~--~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 233 (465)
.. . ...+. ......+|+. .+ ++..+++... ..........+... .....++.+++|||++||+.++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~iPg~-~~-~~~~dlp~~~--~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 150 YANNVLAPLKEPKGQQNELVPEF-HP-LRCKDFPVSH--WASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred HhccCCCCccccccCccccCCCC-CC-CChHHCcchh--cCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHH
Confidence 10 0 00000 0011123430 00 2222222111 00000011112211 12467899999999999999999998
Q ss_pred hhCCCCeEeeccCCCCCCC-CCc---chhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCC
Q 037721 234 TQFKKPVLLTGPLVNPEPP-SGE---LEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFP 309 (465)
Q Consensus 234 ~~~~~~~~~vGp~~~~~~~-~~~---~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 309 (465)
...+++++.|||+ .+.+. ... ...++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|+|+++.+
T Consensus 225 ~~~~~~v~~vGpl-~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~ 303 (451)
T PLN02410 225 QQLQIPVYPIGPL-HLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG 303 (451)
T ss_pred hccCCCEEEeccc-ccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 7666789999999 64321 111 123578899999889999999999999999999999999999999999999853
Q ss_pred CCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHH
Q 037721 310 PNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKL 389 (465)
Q Consensus 310 ~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~ 389 (465)
.... .+....+|++|.++.++++ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 304 ~~~~--~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 380 (451)
T PLN02410 304 SVRG--SEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARY 380 (451)
T ss_pred cccc--cchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHH
Confidence 2110 0012348999999876655 555999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHHHHHHHHHHHhh
Q 037721 390 VAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 390 v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~~ 464 (465)
+++.||+|+.+.. .+++++|+++|+++|. ++++++||+++++|++++++ +|++.+++++|+++++.+
T Consensus 381 ~~~~~~~G~~~~~-----~~~~~~v~~av~~lm~---~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 381 LECVWKIGIQVEG-----DLDRGAVERAVKRLMV---EEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHhCeeEEeCC-----cccHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9988899999973 4899999999999997 44467999999999999984 577899999999998764
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-62 Score=487.95 Aligned_cols=444 Identities=25% Similarity=0.377 Sum_probs=330.0
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccC----CCCCeeEEEccCCCC-CCCCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLN----LTPMADIIPLQIPHV-DGLPPGLDST 83 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~----~~~~~~~~~l~~~~~-~~~~~~~~~~ 83 (465)
++.||+++|+|++||++|++.||+.|++||+.|||++++.+...+....+ ....++|+.+|+|.. +++|.+.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 45799999999999999999999999999999999999988765544210 012489999997753 5787665443
Q ss_pred CCCch-HHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccC
Q 037721 84 SEMTP-HMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLN 160 (465)
Q Consensus 84 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 160 (465)
.+.+. .+...+....+...+.+.+++++. +|+|||+|.+.+|+..+ |+++|||+++|++++++....+........
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dV-A~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKT-AQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHH-HHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 34332 344444455556677888888763 57999999999999999 999999999999998887665432211110
Q ss_pred ---CcccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhh-hcccccCCccEEEEcCccccccchHHHHHhhC
Q 037721 161 ---NSLADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYE-RGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQF 236 (465)
Q Consensus 161 ---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (465)
......+...+++|. ... ++..+++... .. ...+..+. .+......++.+++|||.+||+.+++.++..+
T Consensus 166 ~~~~~~~~~~~~iPg~p~-~~~-l~~~dlp~~~---~~-~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 239 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQ-SIE-ITRAQLPGAF---VS-LPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI 239 (491)
T ss_pred cccCCCCCceeecCCCCc-ccc-ccHHHCChhh---cC-cccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc
Confidence 000001111122221 111 2332332211 00 01122222 22222345779999999999999999998766
Q ss_pred CCCeEeeccCCCCCCC---C----C---c-chhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEE
Q 037721 237 KKPVLLTGPLVNPEPP---S----G---E-LEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLV 305 (465)
Q Consensus 237 ~~~~~~vGp~~~~~~~---~----~---~-~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~ 305 (465)
+++++.|||+ .+... + . . ...++.+|||.++++++|||||||.....++++.+++.+|+.++.+|||+
T Consensus 240 ~~~v~~VGPL-~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~ 318 (491)
T PLN02534 240 KKKVWCVGPV-SLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWV 318 (491)
T ss_pred CCcEEEECcc-cccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 6789999999 54211 0 0 0 23468899999998999999999999999999999999999999999999
Q ss_pred EcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchh
Q 037721 306 LNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFL 385 (465)
Q Consensus 306 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~ 385 (465)
++....... .....+|++|.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.
T Consensus 319 ~r~~~~~~~--~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~ 396 (491)
T PLN02534 319 IKTGEKHSE--LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFL 396 (491)
T ss_pred EecCccccc--hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHH
Confidence 985321100 011246899998878889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcceEEeeec------CCC--C-ccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHH
Q 037721 386 NSKLVAGDLKAGVEVNRR------DHD--G-HFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDK 452 (465)
Q Consensus 386 na~~v~~~~G~G~~l~~~------~~~--~-~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~ 452 (465)
||+++++.||+|+++... +++ + .+++++|.++|+++|.. ++++++++|+||++|++.+++ +|++.+
T Consensus 397 na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~-~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~ 475 (491)
T PLN02534 397 NEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDD-GGEEGERRRRRAQELGVMARKAMELGGSSHI 475 (491)
T ss_pred HHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999889999988521 001 1 48999999999999962 145678999999999999876 488899
Q ss_pred HHHHHHHHHHh
Q 037721 453 FIADFVKDLKA 463 (465)
Q Consensus 453 ~~~~~~~~l~~ 463 (465)
++++|++++++
T Consensus 476 nl~~fv~~i~~ 486 (491)
T PLN02534 476 NLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 10
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.2e-62 Score=483.63 Aligned_cols=438 Identities=24% Similarity=0.366 Sum_probs=322.4
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhh-cc-c-CC--CCCeeEEEccCCCCCCCC-CCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLH-GVKVSFFSAPGNIPRIK-SS-L-NL--TPMADIIPLQIPHVDGLP-PGLD 81 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~i~-~~-g-~~--~~~~~~~~l~~~~~~~~~-~~~~ 81 (465)
++.||+++|+|++||++|++.||+.|+++ |..|||+++......+. +. . .. .+.+++..+|++..++++ .+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~-- 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD-- 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC--
Confidence 56799999999999999999999999977 99999998886554321 11 1 11 124899999865433331 11
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCCcccccccccccCCe-eEEEecchHHHHHHHhccccc
Q 037721 82 STSEMTPHMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTHYWLPGLVGSQLGIK-TVNFSVFSAISQAYLVVPARK 158 (465)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~ 158 (465)
. .....+........+.+++++++. +|+|||+|.+++|+..+ |+++||| .++++++.++.+..+++++..
T Consensus 80 -~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~v-A~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 80 -A-----TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSI-ADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred -c-----cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHH-HHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 0 122223344445667888888765 67999999999999999 9999999 588888888777655544221
Q ss_pred cCC-cc--cccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhh
Q 037721 159 LNN-SL--ADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQ 235 (465)
Q Consensus 159 ~~~-~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (465)
... .. .+.+.+ ..+|+.. . ++..+++... .......+..+.+..+....++++++|||++||+.+++.++..
T Consensus 153 ~~~~~~~~~~~~~~-~~vPg~p-~-l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 153 DTVVEGEYVDIKEP-LKIPGCK-P-VGPKELMETM--LDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred hcccccccCCCCCe-eeCCCCC-C-CChHHCCHhh--cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 110 00 011111 2345410 0 3333333211 1111111222223333467899999999999999999988764
Q ss_pred C------CCCeEeeccCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCC
Q 037721 236 F------KKPVLLTGPLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFP 309 (465)
Q Consensus 236 ~------~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~ 309 (465)
+ .++++.|||+ .+.......+.++.+|||.++++++|||||||....+.+++.+++.+|+.++++|||+++..
T Consensus 228 ~~~~~~~~~~v~~VGPl-~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~ 306 (470)
T PLN03015 228 MELNRVMKVPVYPIGPI-VRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRP 306 (470)
T ss_pred cccccccCCceEEecCC-CCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 2 2469999999 64321112235799999999889999999999999999999999999999999999999753
Q ss_pred CCC-----CCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccch
Q 037721 310 PNV-----DGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQF 384 (465)
Q Consensus 310 ~~~-----~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~ 384 (465)
... ...++....+|++|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 307 ~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~ 386 (470)
T PLN03015 307 ASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQW 386 (470)
T ss_pred ccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchH
Confidence 210 000012346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC----CchHHHHHHHHHH
Q 037721 385 LNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG----QIQDKFIADFVKD 460 (465)
Q Consensus 385 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~~~~~~~~ 460 (465)
.||+++++.||+|+.+...+..+.++.++|.++|+++|.. +++++.++|+||++|+++++++ |++.++++++++.
T Consensus 387 ~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~-~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~ 465 (470)
T PLN03015 387 MNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAE-EDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKR 465 (470)
T ss_pred HHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHcc-CcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Confidence 9999997667999999632112369999999999999961 1366889999999999999864 7889999999988
Q ss_pred HH
Q 037721 461 LK 462 (465)
Q Consensus 461 l~ 462 (465)
++
T Consensus 466 ~~ 467 (470)
T PLN03015 466 CY 467 (470)
T ss_pred cc
Confidence 64
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=8.9e-62 Score=484.91 Aligned_cols=430 Identities=20% Similarity=0.292 Sum_probs=314.0
Q ss_pred CCCCCCCCCCcEEEEecCCCccCHHHHHHHHHH--HHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCC
Q 037721 1 MGTESAEADQLHVVMFPWFAFGHISPFVQLSNK--LSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPP 78 (465)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~ 78 (465)
|+++ ...+.||+++|+|++||++|++.||++ |++||++|||++++.+.+.++..+.....+++..++ ++++.
T Consensus 1 ~~~~--~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~----~glp~ 74 (456)
T PLN02210 1 MGSS--EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS----DGLPK 74 (456)
T ss_pred CCCc--CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC----CCCCC
Confidence 5553 344689999999999999999999999 569999999999998877665433111235555554 56665
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccc
Q 037721 79 GLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARK 158 (465)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 158 (465)
+.. . ....++....+...+.+.+++++.+|||||+|.+.+|+..+ |+++|||+++|+++++..+.++.+....
T Consensus 75 ~~~---~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~v-A~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 75 DDP---R---APETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAV-AAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred Ccc---c---CHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHH-HHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 432 1 11123333333456678888888889999999999999999 9999999999999888877765543211
Q ss_pred c-CCcccccCCCCCCCCCCccCCCChhhhhhhhhhh-hcCCCCch-hhhhcccccCCccEEEEcCccccccchHHHHHhh
Q 037721 159 L-NNSLADLMKSPDGFPATSITSLDEFVARDYLYVY-TKFNGGPS-VYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQ 235 (465)
Q Consensus 159 ~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (465)
. .....+....+..+|+ ++.....++.... ......+. .+.++.+....++++++|||.++|+.+++.+++
T Consensus 148 ~~~~~~~~~~~~~~~~Pg-----l~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 221 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPA-----LPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD- 221 (456)
T ss_pred cCCCCcccccCCeeeCCC-----CCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-
Confidence 1 1100000001122443 2111222222211 11111121 222343445678899999999999999998876
Q ss_pred CCCCeEeeccCCCCC-----CCC----------CcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCC
Q 037721 236 FKKPVLLTGPLVNPE-----PPS----------GELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGL 300 (465)
Q Consensus 236 ~~~~~~~vGp~~~~~-----~~~----------~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~ 300 (465)
. +++++|||+ ++. ... ...+.++.+|++.++++++|||||||....+.+++.+++.+|+..+.
T Consensus 222 ~-~~v~~VGPl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 222 L-KPVIPIGPL-VSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred c-CCEEEEccc-CchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 3 479999999 641 110 01234678999999888999999999998999999999999999999
Q ss_pred CeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeecccc
Q 037721 301 PFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLK 380 (465)
Q Consensus 301 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~ 380 (465)
+|||+++... ....+.+|.++....+.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 300 ~flw~~~~~~--------~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~ 371 (456)
T PLN02210 300 PFLWVIRPKE--------KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW 371 (456)
T ss_pred CEEEEEeCCc--------cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9999997531 11223455555432333566999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHHHHH
Q 037721 381 GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKFIAD 456 (465)
Q Consensus 381 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~ 456 (465)
+||+.||+++++.||+|+.+...++++.++.++|+++|+++|. +++++++|+||++|++.+++ +|++.+++++
T Consensus 372 ~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~---~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~ 448 (456)
T PLN02210 372 TDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTE---GPAAADIRRRAAELKHVARLALAPGGSSARNLDL 448 (456)
T ss_pred cccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999984599999975322346999999999999997 44456799999999999876 4778899999
Q ss_pred HHHHHH
Q 037721 457 FVKDLK 462 (465)
Q Consensus 457 ~~~~l~ 462 (465)
|+++++
T Consensus 449 ~v~~~~ 454 (456)
T PLN02210 449 FISDIT 454 (456)
T ss_pred HHHHHh
Confidence 999886
No 12
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.4e-61 Score=483.28 Aligned_cols=438 Identities=22% Similarity=0.347 Sum_probs=317.1
Q ss_pred CCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccC------C---CCCeeEEEccCCCCCCC
Q 037721 6 AEADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLN------L---TPMADIIPLQIPHVDGL 76 (465)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~------~---~~~~~~~~l~~~~~~~~ 76 (465)
+...+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+... . ...++|..+| +++
T Consensus 3 ~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----dgl 78 (480)
T PLN02555 3 SESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----DGW 78 (480)
T ss_pred CCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----CCC
Confidence 44557899999999999999999999999999999999999987665542110 0 0124555454 566
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhhc----CC-cEEEEcCCCcccccccccccCCeeEEEecchHHHHHH
Q 037721 77 PPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQL----KP-HFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAY 151 (465)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~p-D~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 151 (465)
|.+.+...+ ...++..........+.++|++. +| +|||+|.+..|+..+ |+++|||+++|+++++..+..
T Consensus 79 p~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~v-A~~~gIP~~~F~t~~a~~~~~ 153 (480)
T PLN02555 79 AEDDPRRQD----LDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDV-AEELGIPSAVLWVQSCACFSA 153 (480)
T ss_pred CCCcccccC----HHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHH-HHHcCCCeEEeecccHHHHHH
Confidence 654332111 11233333323456666666542 44 999999999999999 999999999999999988887
Q ss_pred Hhcccccc-CCcccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHH
Q 037721 152 LVVPARKL-NNSLADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLD 230 (465)
Q Consensus 152 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 230 (465)
+++..... +......+.....+|+.. . ++..+++.+..........+..+.+..+....++++++|||.+||+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~iPglp-~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 231 (480)
T PLN02555 154 YYHYYHGLVPFPTETEPEIDVQLPCMP-L-LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIID 231 (480)
T ss_pred HHHHhhcCCCcccccCCCceeecCCCC-C-cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 66553211 101000000111244400 0 33333333221000111111223333345677899999999999999999
Q ss_pred HHHhhCCCCeEeeccCCCCCC----CC--C---cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCC
Q 037721 231 FVRTQFKKPVLLTGPLVNPEP----PS--G---ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLP 301 (465)
Q Consensus 231 ~~~~~~~~~~~~vGp~~~~~~----~~--~---~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~ 301 (465)
.++... + ++.|||+ .+.. .. . ..+.++.+||+.++++++|||||||....+.+++.+++.+++..+++
T Consensus 232 ~l~~~~-~-v~~iGPl-~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 232 YMSKLC-P-IKPVGPL-FKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred HHhhCC-C-EEEeCcc-cCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 887643 3 9999999 5421 11 1 23467999999998889999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccc
Q 037721 302 FFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKG 381 (465)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~ 381 (465)
|||+++....... .....+|++|.++.++ |+.+.+|+||.+||.|+++++|||||||||++||+++|||||++|+++
T Consensus 309 flW~~~~~~~~~~--~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~ 385 (480)
T PLN02555 309 FLWVMRPPHKDSG--VEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWG 385 (480)
T ss_pred EEEEEecCccccc--chhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCcc
Confidence 9999874311000 0123588888876544 456779999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhhcceEEeeecC-CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHHHHH
Q 037721 382 DQFLNSKLVAGDLKAGVEVNRRD-HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKFIAD 456 (465)
Q Consensus 382 DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~ 456 (465)
||+.||+++++.||+|+.+...+ ..+.++.++|.++|+++|. +++++++|+||++|++.+++ +|++.+++++
T Consensus 386 DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~---~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~ 462 (480)
T PLN02555 386 DQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATV---GEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQE 462 (480)
T ss_pred ccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999889999995311 1235899999999999997 55678999999999999765 4888999999
Q ss_pred HHHHHHh
Q 037721 457 FVKDLKA 463 (465)
Q Consensus 457 ~~~~l~~ 463 (465)
||+++++
T Consensus 463 ~v~~i~~ 469 (480)
T PLN02555 463 FVDKLVR 469 (480)
T ss_pred HHHHHHh
Confidence 9999875
No 13
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.1e-61 Score=477.69 Aligned_cols=435 Identities=21% Similarity=0.301 Sum_probs=312.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCCCh-hhh----hcccCCCCCeeEEEccCCCCCCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHG--VKVSFFSAPGNI-PRI----KSSLNLTPMADIIPLQIPHVDGLPPGLD 81 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~-~~i----~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 81 (465)
.+.||+++|+|++||++|++.||+.|+++| ..|||++++.+. ..+ .+.....+.++|..+|.+. ..+.. .
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~-~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE--EKPTL-G 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC--CCCcc-c
Confidence 457999999999999999999999999998 999999998765 222 2111111358999998211 11111 1
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhhc----CC-cEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccc
Q 037721 82 STSEMTPHMAELLKQALDLMQPQIKTLLSQL----KP-HFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPA 156 (465)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~p-D~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 156 (465)
...+....+............+.+.+++++. +| +|||+|.+.+|+..+ |+++|||+++|+++++..+.++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~v-A~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDV-AKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHH-HHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1111111122222221122244566666542 34 899999999999999 99999999999999998877665543
Q ss_pred cccC-C-cc--cccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHH
Q 037721 157 RKLN-N-SL--ADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFV 232 (465)
Q Consensus 157 ~~~~-~-~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 232 (465)
.... . .. .+.+ .+..+|+-... ++..+++.+. .. ...+..+.+......+++++++|||++||+++++.+
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~vPgl~~~-l~~~dlp~~~---~~-~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~ 231 (468)
T PLN02207 158 DRHSKDTSVFVRNSE-EMLSIPGFVNP-VPANVLPSAL---FV-EDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHF 231 (468)
T ss_pred hccccccccCcCCCC-CeEECCCCCCC-CChHHCcchh---cC-CccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 2111 0 00 0000 11234441001 3333333221 11 111333334444567899999999999999988888
Q ss_pred Hh-hCCCCeEeeccCCCCCCCC-C-----cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEE
Q 037721 233 RT-QFKKPVLLTGPLVNPEPPS-G-----ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLV 305 (465)
Q Consensus 233 ~~-~~~~~~~~vGp~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~ 305 (465)
+. ...++++.|||+ ...+.. . ...+++.+|||.++++++|||||||....+.+++.+++.+|+.++++|||+
T Consensus 232 ~~~~~~p~v~~VGPl-~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 232 LDEQNYPSVYAVGPI-FDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred HhccCCCcEEEecCC-cccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 64 234689999999 643211 1 122579999999988899999999999999999999999999999999999
Q ss_pred EcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchh
Q 037721 306 LNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFL 385 (465)
Q Consensus 306 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~ 385 (465)
++..... ....+|++|.++.+++. .+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 311 ~r~~~~~-----~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 384 (468)
T PLN02207 311 LRTEEVT-----NDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQL 384 (468)
T ss_pred EeCCCcc-----ccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchh
Confidence 9853211 13468999998766554 56699999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcceEEeeec---CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHHHHHHH
Q 037721 386 NSKLVAGDLKAGVEVNRR---DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKFIADFV 458 (465)
Q Consensus 386 na~~v~~~~G~G~~l~~~---~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~ 458 (465)
||+++++.||+|+.+... +..+.++.++|.++|+++|. + ++++||+||++|++.+++ +|++.+++++|+
T Consensus 385 Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~---~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v 460 (468)
T PLN02207 385 NAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN---K-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFI 460 (468)
T ss_pred hHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh---c-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999988856999988421 11224699999999999995 2 368999999999999985 477889999999
Q ss_pred HHHHhh
Q 037721 459 KDLKAL 464 (465)
Q Consensus 459 ~~l~~~ 464 (465)
++++.+
T Consensus 461 ~~~~~~ 466 (468)
T PLN02207 461 HDVIGI 466 (468)
T ss_pred HHHHhc
Confidence 998764
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.5e-61 Score=486.17 Aligned_cols=442 Identities=26% Similarity=0.387 Sum_probs=325.3
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccC-C---CC--CeeEEEccCCCC-CCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLN-L---TP--MADIIPLQIPHV-DGLPPGLD 81 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~-~---~~--~~~~~~l~~~~~-~~~~~~~~ 81 (465)
++.||+++|+|++||++|++.||+.|++||++|||++++.+...+++.++ . .+ .+++..+++|.. ++++.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46799999999999999999999999999999999999998877665541 0 11 134555554432 35665433
Q ss_pred CCCC-------CchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhc
Q 037721 82 STSE-------MTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVV 154 (465)
Q Consensus 82 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 154 (465)
.... ....+...+....+.+.+.+.+++++.+|||||+|.+++|+..+ |+++|||+|+|++++++.......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~v-A~~lgIP~v~f~~~~a~~~~~~~~ 162 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEA-AEKFGVPRLVFHGTGYFSLCASYC 162 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHH-HHHhCCCeEEeecccHHHHHHHHH
Confidence 2211 11123333345556677888888888899999999999999999 999999999999988876654432
Q ss_pred cccccC---CcccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHH
Q 037721 155 PARKLN---NSLADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDF 231 (465)
Q Consensus 155 ~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 231 (465)
.....+ ....+.+...+++|. .+. ++..++... .........+....+...+++.+++||+.+||+++.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~pg~p~-~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~ 236 (482)
T PLN03007 163 IRVHKPQKKVASSSEPFVIPDLPG-DIV-ITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADF 236 (482)
T ss_pred HHhcccccccCCCCceeeCCCCCC-ccc-cCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHH
Confidence 211111 000000111122331 111 222222211 00000012233344456778899999999999998888
Q ss_pred HHhhCCCCeEeeccCCCCCCC--------CC---cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCC
Q 037721 232 VRTQFKKPVLLTGPLVNPEPP--------SG---ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGL 300 (465)
Q Consensus 232 ~~~~~~~~~~~vGp~~~~~~~--------~~---~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~ 300 (465)
+++.....+++|||+ .+... .. ..+.++.+|++.++++++|||||||....+.+++.+++.+|+..++
T Consensus 237 ~~~~~~~~~~~VGPl-~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~ 315 (482)
T PLN03007 237 YKSFVAKRAWHIGPL-SLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQ 315 (482)
T ss_pred HHhccCCCEEEEccc-cccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCC
Confidence 877665679999998 43211 00 1246789999999889999999999988889999999999999999
Q ss_pred CeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeecccc
Q 037721 301 PFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLK 380 (465)
Q Consensus 301 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~ 380 (465)
+|||+++...... +....+|++|.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 316 ~flw~~~~~~~~~---~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~ 392 (482)
T PLN03007 316 NFIWVVRKNENQG---EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVG 392 (482)
T ss_pred CEEEEEecCCccc---chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccch
Confidence 9999998642210 0134689999999889999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcceEEeeecC----CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHH
Q 037721 381 GDQFLNSKLVAGDLKAGVEVNRRD----HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDK 452 (465)
Q Consensus 381 ~DQ~~na~~v~~~~G~G~~l~~~~----~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~ 452 (465)
+||+.||+++++.|++|+.+...+ +.+.+++++|+++|+++|. ++++++||+||+++++.+++ +|++.+
T Consensus 393 ~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~---~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 393 AEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIV---GEEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred hhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999987667777764210 1235899999999999998 34455999999999999986 477899
Q ss_pred HHHHHHHHHHhh
Q 037721 453 FIADFVKDLKAL 464 (465)
Q Consensus 453 ~~~~~~~~l~~~ 464 (465)
++++|++.++++
T Consensus 470 ~l~~~v~~~~~~ 481 (482)
T PLN03007 470 DLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-61 Score=480.27 Aligned_cols=418 Identities=22% Similarity=0.352 Sum_probs=309.1
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchH
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
+.||+++|+|++||++|+++||+.|+.+|++|||++++.+...+.+.....+.+++..+| ++++.+. +..
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp----~g~~~~~------~~~ 75 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSIS----DGQDDDP------PRD 75 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECC----CCCCCCc------ccc
Confidence 469999999999999999999999999999999999998876655431111248999987 4443211 111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhc---C-CcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhcccccc-C-Ccc
Q 037721 90 MAELLKQALDLMQPQIKTLLSQL---K-PHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKL-N-NSL 163 (465)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~l~~~---~-pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~-~-~~~ 163 (465)
...+.........+.+.+++++. + ++|||+|.+..|+..+ |+++|||+++|+++.+..+..+.+.+... . ...
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~v-A~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 154 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGV-ADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLIS 154 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHH-HHHhCCCEEEEechhHHHHHHHHHHHHHhhccccc
Confidence 22222222224566777777654 2 3799999999999999 99999999999999888777654432111 0 000
Q ss_pred -cc---cCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHh----h
Q 037721 164 -AD---LMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRT----Q 235 (465)
Q Consensus 164 -~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~----~ 235 (465)
.+ ...+...+|+.. . ++..+++.+..........+..+.+..+....++++++|||.+||+.+++.... .
T Consensus 155 ~~~~~~~~~~~~~~Pg~~-~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 232 (448)
T PLN02562 155 ETGCPRQLEKICVLPEQP-L-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNG 232 (448)
T ss_pred cccccccccccccCCCCC-C-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccc
Confidence 00 001111344300 0 333333332110000111123344444556778999999999999988876653 2
Q ss_pred CCCCeEeeccCCCCCCCC---C----cchhhhccccCCCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHHhcCCCeEEEEc
Q 037721 236 FKKPVLLTGPLVNPEPPS---G----ELEERWAKWLCKYPPKSVIYCSFGSET-FLTVDQIKELAIGLEITGLPFFLVLN 307 (465)
Q Consensus 236 ~~~~~~~vGp~~~~~~~~---~----~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~i~~al~~~~~~~i~~~~ 307 (465)
..++++.|||+ .+.+.. . +...++.+||+.++++++|||||||.. ..+.+++.+++.+++..+.+|||+++
T Consensus 233 ~~~~v~~iGpl-~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~ 311 (448)
T PLN02562 233 QNPQILQIGPL-HNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLN 311 (448)
T ss_pred cCCCEEEecCc-ccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 34689999999 654311 1 122456799999988899999999986 57889999999999999999999997
Q ss_pred CCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhH
Q 037721 308 FPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNS 387 (465)
Q Consensus 308 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na 387 (465)
.+ ....+|++|.++.+ .|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 312 ~~--------~~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na 382 (448)
T PLN02562 312 PV--------WREGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNC 382 (448)
T ss_pred CC--------chhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHH
Confidence 53 12357888887654 4567779999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHH
Q 037721 388 KLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG---QIQDKFIADFVKDLK 462 (465)
Q Consensus 388 ~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~---~~~~~~~~~~~~~l~ 462 (465)
+++++.||+|+.+.. ++.++|.++|+++|. +++||+||+++++++++. |++.+++++|+++++
T Consensus 383 ~~~~~~~g~g~~~~~------~~~~~l~~~v~~~l~------~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 383 AYIVDVWKIGVRISG------FGQKEVEEGLRKVME------DSGMGERLMKLRERAMGEEARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHhCceeEeCC------CCHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 999876699988852 799999999999998 899999999999999764 688999999999874
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.2e-60 Score=477.84 Aligned_cols=437 Identities=21% Similarity=0.331 Sum_probs=319.9
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCCChh----hhhccc----CCCCCeeEEEccCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHG----VKVSFFSAPGNIP----RIKSSL----NLTPMADIIPLQIPHVDGL 76 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~V~~~~~~~~~~----~i~~~g----~~~~~~~~~~l~~~~~~~~ 76 (465)
.|.||+++|+|++||++|++.||+.|+.|| +.|||++++.+.. .+...- .....+++..+|.+ ..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~ 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV---EP 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC---CC
Confidence 466999999999999999999999999996 7999999876422 222210 00114899998832 12
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhc
Q 037721 77 PPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVV 154 (465)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 154 (465)
+.+.+ ....++........+.+.+++++. +++|||+|.+.+|+..+ |+++|||++.|+++++..+.++.+
T Consensus 79 p~~~e-------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dV-A~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 79 PTDAA-------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDV-ARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCccc-------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHH-HHHhCCCEEEEECccHHHHHHHhh
Confidence 22211 111233334445667788888765 45999999999999999 999999999999999998887766
Q ss_pred cccccCC---cccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHH
Q 037721 155 PARKLNN---SLADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDF 231 (465)
Q Consensus 155 ~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 231 (465)
.+..... ...+...+ ..+|+.. . ++..+++.... ......+..+....+....++.+++|||.+||+.+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~~iPGlp-~-l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 151 LPALDEEVAVEFEEMEGA-VDVPGLP-P-VPASSLPAPVM--DKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhcccccCcccccCcc-eecCCCC-C-CChHHCCchhc--CCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 5321110 00111111 1244400 0 22222222110 11111122222233445678999999999999999999
Q ss_pred HHhhC------CCCeEeeccCCCCCC---CCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCe
Q 037721 232 VRTQF------KKPVLLTGPLVNPEP---PSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPF 302 (465)
Q Consensus 232 ~~~~~------~~~~~~vGp~~~~~~---~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~ 302 (465)
++... .++++.|||+ .+.. .....++++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl-~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~f 304 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPV-ISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRF 304 (480)
T ss_pred HHhccccccCCCCceEEeCCC-ccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCE
Confidence 87642 1479999999 6321 111234579999999988999999999998899999999999999999999
Q ss_pred EEEEcCCCCCCC----cccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeecc
Q 037721 303 FLVLNFPPNVDG----QSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLP 378 (465)
Q Consensus 303 i~~~~~~~~~~~----~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P 378 (465)
||+++....... ..+....+|++|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++|||||+||
T Consensus 305 lWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 305 LWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 999986421000 0001235899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhcceEEeeecCC-CCccCHHHHHHHHHHhhcccCCc-chHHHHHHHHHHHHHHHc----CCchHH
Q 037721 379 LKGDQFLNSKLVAGDLKAGVEVNRRDH-DGHFGKEDIFKAVKTVMVDVNKE-PGASIRANQKWWREFLLN----GQIQDK 452 (465)
Q Consensus 379 ~~~DQ~~na~~v~~~~G~G~~l~~~~~-~~~~~~~~l~~ai~~ll~~~~~~-~~~~~~~~a~~l~~~~~~----~~~~~~ 452 (465)
+++||+.||+++++.||+|+.+...++ ++.++.++|.++|+++|.+ ++ +...+|++|++|++.+++ +|++.+
T Consensus 385 ~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~ 462 (480)
T PLN00164 385 LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGG--GEEEGRKAREKAAEMKAACRKAVEEGGSSYA 462 (480)
T ss_pred ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999988765699999964311 2357999999999999972 32 367899999999999986 477888
Q ss_pred HHHHHHHHHHhh
Q 037721 453 FIADFVKDLKAL 464 (465)
Q Consensus 453 ~~~~~~~~l~~~ 464 (465)
++++|++++++.
T Consensus 463 ~l~~~v~~~~~~ 474 (480)
T PLN00164 463 ALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-60 Score=473.17 Aligned_cols=419 Identities=21% Similarity=0.328 Sum_probs=300.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCCCChhhhh----cccCCCCCeeEEEccCCCCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHG--VKVSF--FSAPGNIPRIK----SSLNLTPMADIIPLQIPHVDGLPPGLD 81 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~--~~~~~~~~~i~----~~g~~~~~~~~~~l~~~~~~~~~~~~~ 81 (465)
+.||+++|+|++||++|++.||+.|+++| +.||+ +++..+...+. ......+.++++.+|. +.+.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~----~~~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPA----VTPYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCC----CCCCCCc
Confidence 45999999999999999999999999998 45555 55544322221 1101113599999983 2221111
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhhc----CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhcccc
Q 037721 82 STSEMTPHMAELLKQALDLMQPQIKTLLSQL----KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPAR 157 (465)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 157 (465)
.... ......+..........+.+++++. +++|||+|.+.+|+..+ |+++|||+++|++++++.+.++.+.+.
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~v-A~~lgIP~v~F~t~sA~~~~~~~~~~~ 155 (451)
T PLN03004 79 STSR--HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDI-TADFTFPVYFFYTSGAACLAFSFYLPT 155 (451)
T ss_pred cccc--cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHH-HHHhCCCEEEEeCHhHHHHHHHHHHHh
Confidence 1111 1111222223334445556666543 34999999999999999 999999999999999998887766432
Q ss_pred ccCCc-ccccC-CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhh
Q 037721 158 KLNNS-LADLM-KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQ 235 (465)
Q Consensus 158 ~~~~~-~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (465)
..... ..... ..+..+|+.. . ++..+++.+.. ......+..+.+.......++.+++|||++||+.+++.++..
T Consensus 156 ~~~~~~~~~~~~~~~v~iPg~p-~-l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 156 IDETTPGKNLKDIPTVHIPGVP-P-MKGSDMPKAVL--ERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred ccccccccccccCCeecCCCCC-C-CChHHCchhhc--CCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 11000 00000 0112334300 0 33333333221 111111233344445566788999999999999999998765
Q ss_pred CC-CCeEeeccCCCCCCC--CC--cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 037721 236 FK-KPVLLTGPLVNPEPP--SG--ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPP 310 (465)
Q Consensus 236 ~~-~~~~~vGp~~~~~~~--~~--~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~ 310 (465)
+. ++++.|||+ .+.+. +. ....++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|||+++...
T Consensus 232 ~~~~~v~~vGPl-~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~ 310 (451)
T PLN03004 232 LCFRNIYPIGPL-IVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPP 310 (451)
T ss_pred CCCCCEEEEeee-ccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 32 579999999 65321 11 11245889999998899999999999999999999999999999999999998542
Q ss_pred CCCCc-ccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHH
Q 037721 311 NVDGQ-SELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKL 389 (465)
Q Consensus 311 ~~~~~-~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~ 389 (465)
..+.+ .+....+|++|.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 311 ~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~ 390 (451)
T PLN03004 311 ELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVM 390 (451)
T ss_pred cccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHH
Confidence 11000 00122489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC
Q 037721 390 VAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG 447 (465)
Q Consensus 390 v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 447 (465)
+++.||+|+.++..+ .+.+++++|+++|+++|. +++||++++++++..+.+
T Consensus 391 ~~~~~g~g~~l~~~~-~~~~~~e~l~~av~~vm~------~~~~r~~a~~~~~~a~~A 441 (451)
T PLN03004 391 IVDEIKIAISMNESE-TGFVSSTEVEKRVQEIIG------ECPVRERTMAMKNAAELA 441 (451)
T ss_pred HHHHhCceEEecCCc-CCccCHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHH
Confidence 987669999997531 235799999999999999 899999999999998754
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-59 Score=471.95 Aligned_cols=427 Identities=24% Similarity=0.323 Sum_probs=314.9
Q ss_pred CCCCCcEEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCC
Q 037721 6 AEADQLHVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDST 83 (465)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (465)
...++.||+++|+|++||++|++.||++|++| ||+|||++++.+...+++... ..+++|+.+| ++++.+....
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp----~~~p~~~~~~ 80 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIP----NVIPSELVRA 80 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECC----CCCCCccccc
Confidence 34568899999999999999999999999999 999999999998887776421 1239999997 3444332211
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccC-
Q 037721 84 SEMTPHMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLN- 160 (465)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~- 160 (465)
. .....+....+.....+.+++++. ++||||+|.+++|+..+ |+++|||+|.++++++..+..+.+......
T Consensus 81 ~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~v-A~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~ 155 (459)
T PLN02448 81 A----DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGV-GNRRNIPVASLWTMSATFFSVFYHFDLLPQN 155 (459)
T ss_pred c----CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHH-HHHhCCCeEEEEhHHHHHHHHHHHhhhhhhc
Confidence 1 122233333334556677777654 57999999999999999 999999999999999877765544422110
Q ss_pred -Ccccc----cCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCC-chhhhhcccccCCccEEEEcCccccccchHHHHHh
Q 037721 161 -NSLAD----LMKSPDGFPATSITSLDEFVARDYLYVYTKFNGG-PSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRT 234 (465)
Q Consensus 161 -~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 234 (465)
..... .+.+..++|+.. . ++..+++.+ ....... ++.+.........++.+++|||++||+.++++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~iPg~~-~-l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 230 (459)
T PLN02448 156 GHFPVELSESGEERVDYIPGLS-S-TRLSDLPPI---FHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKS 230 (459)
T ss_pred cCCCCccccccCCccccCCCCC-C-CChHHCchh---hcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHh
Confidence 00000 011122455410 0 222222222 1111111 22333333445667899999999999999999887
Q ss_pred hCCCCeEeeccCCCCCCCC--------C-cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEE
Q 037721 235 QFKKPVLLTGPLVNPEPPS--------G-ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLV 305 (465)
Q Consensus 235 ~~~~~~~~vGp~~~~~~~~--------~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~ 305 (465)
.++.+++.|||+ .+.... . ..+.++.+|++.++++++|||||||....+.+++.+++.+|+..+++|||+
T Consensus 231 ~~~~~~~~iGP~-~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 231 KFPFPVYPIGPS-IPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred hcCCceEEecCc-ccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 666689999999 653110 0 012378899999888999999999998888999999999999999999998
Q ss_pred EcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchh
Q 037721 306 LNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFL 385 (465)
Q Consensus 306 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~ 385 (465)
++... .++.+..+ .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 310 ~~~~~-------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~ 375 (459)
T PLN02448 310 ARGEA-------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPL 375 (459)
T ss_pred EcCch-------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchh
Confidence 76421 12322222 36677799999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcceEEeeec-CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHHHHHHHHH
Q 037721 386 NSKLVAGDLKAGVEVNRR-DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKFIADFVKD 460 (465)
Q Consensus 386 na~~v~~~~G~G~~l~~~-~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~ 460 (465)
||+++++.||+|+.+... +..+.+++++|+++|+++|.+. ++++.+||+||++|++++++ +|++.+++++|+++
T Consensus 376 na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~-~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~ 454 (459)
T PLN02448 376 NSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE-SEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRD 454 (459)
T ss_pred hHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999877999998642 1123579999999999999721 24567999999999999875 47889999999999
Q ss_pred HHh
Q 037721 461 LKA 463 (465)
Q Consensus 461 l~~ 463 (465)
+++
T Consensus 455 ~~~ 457 (459)
T PLN02448 455 ISQ 457 (459)
T ss_pred Hhc
Confidence 875
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.1e-59 Score=466.58 Aligned_cols=422 Identities=23% Similarity=0.375 Sum_probs=303.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCCCh-hhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSL-HGVKVSFFSAPGNI-PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMT 87 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~-~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (465)
+.||+++|+|++||++|+++||+.|++ +|+.|||++++.+. ..+.......++++|+.++ ++++.+.+...+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~----dglp~g~~~~~~-- 76 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS----DGFDDGVISNTD-- 76 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC----CCCCCccccccc--
Confidence 469999999999999999999999996 79999999998542 2111111001258999987 677654321111
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhc----C-CcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCc
Q 037721 88 PHMAELLKQALDLMQPQIKTLLSQL----K-PHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNS 162 (465)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~----~-pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (465)
.....+........+.+.+++++. + ++|||+|.+.+|+..+ |+++|||++.|+++++..+..+++.....
T Consensus 77 -~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dv-A~~lgIP~~~f~t~~a~~~~~~~~~~~~~--- 151 (455)
T PLN02152 77 -DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKV-ARRFHLPSVLLWIQPAFVFDIYYNYSTGN--- 151 (455)
T ss_pred -cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHH-HHHhCCCEEEEECccHHHHHHHHHhhccC---
Confidence 122223333334445666666542 3 4999999999999999 99999999999999999888766543110
Q ss_pred ccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCC-C-chhhhhcccccC--CccEEEEcCccccccchHHHHHhhCCC
Q 037721 163 LADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNG-G-PSVYERGIQGVD--GCDVLAIKTCNEMEGPYLDFVRTQFKK 238 (465)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~~~~~~~ 238 (465)
+ ....+|+.. . ++..+++.+.. ..... . ...+.+..+... .++.+++|||++||+.+++.++. .
T Consensus 152 --~---~~~~iPglp-~-l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~ 219 (455)
T PLN02152 152 --N---SVFEFPNLP-S-LEIRDLPSFLS--PSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---I 219 (455)
T ss_pred --C---CeeecCCCC-C-CchHHCchhhc--CCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---C
Confidence 0 111244300 0 22223322211 11101 1 122223333222 24699999999999999988854 2
Q ss_pred CeEeeccCCCCCC----CC--C-----cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEc
Q 037721 239 PVLLTGPLVNPEP----PS--G-----ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLN 307 (465)
Q Consensus 239 ~~~~vGp~~~~~~----~~--~-----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~ 307 (465)
+++.|||+ .+.. .. . +...++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|||+++
T Consensus 220 ~v~~VGPL-~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r 298 (455)
T PLN02152 220 EMVAVGPL-LPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVIT 298 (455)
T ss_pred CEEEEccc-CccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 59999999 6532 10 0 11246999999998889999999999999999999999999999999999998
Q ss_pred CCCCCCC--cccc--cccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccc
Q 037721 308 FPPNVDG--QSEL--VRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQ 383 (465)
Q Consensus 308 ~~~~~~~--~~~~--~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ 383 (465)
.....+. ..+. .-.+|++|.++.++.. ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 377 (455)
T PLN02152 299 DKLNREAKIEGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ 377 (455)
T ss_pred cCcccccccccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 6321100 0000 1124788887765444 566999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC----CchHHHHHHHHH
Q 037721 384 FLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG----QIQDKFIADFVK 459 (465)
Q Consensus 384 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~~~~~~~ 459 (465)
+.||+++++.||+|+.+...+ ++.++.++|+++|+++|. +++.+||+||++|++.++++ |++.+++++|++
T Consensus 378 ~~na~~~~~~~~~G~~~~~~~-~~~~~~e~l~~av~~vm~----~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~ 452 (455)
T PLN02152 378 PANAKLLEEIWKTGVRVRENS-EGLVERGEIRRCLEAVME----EKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVK 452 (455)
T ss_pred hHHHHHHHHHhCceEEeecCc-CCcCcHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999999778888875421 235799999999999996 12456999999999988764 778999999998
Q ss_pred HH
Q 037721 460 DL 461 (465)
Q Consensus 460 ~l 461 (465)
++
T Consensus 453 ~i 454 (455)
T PLN02152 453 TL 454 (455)
T ss_pred Hh
Confidence 76
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.7e-59 Score=470.73 Aligned_cols=432 Identities=20% Similarity=0.266 Sum_probs=311.1
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCCChhhh-------hcccC-CCCCeeEEEccCCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHG--VKVSFFSAPGNIPRI-------KSSLN-LTPMADIIPLQIPHVDGLPPG 79 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~i-------~~~g~-~~~~~~~~~l~~~~~~~~~~~ 79 (465)
|.||+++|+|++||++|+++||+.|+.+| ..|||++++.+...+ .+... ..+.++++.+|.+ .+..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG----DQPT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC----CCCc
Confidence 56999999999999999999999999998 889999998764321 11000 0124999999833 2211
Q ss_pred CCCCCCCchHHHHHHHHHHHhhHHHHHHHHhh-----cCC-cEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHh
Q 037721 80 LDSTSEMTPHMAELLKQALDLMQPQIKTLLSQ-----LKP-HFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLV 153 (465)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~p-D~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 153 (465)
.. .. .....+........+.+.+++.+ .+| +|||+|.++.|+..+ |+++|||++.|+++++..+.++.
T Consensus 78 ~~----~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dv-A~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 78 TE----DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDV-ANEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred cc----ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHH-HHHhCCCEEEEeCCcHHHHHHHH
Confidence 11 11 22233333344445555665543 134 799999999999999 99999999999999999888776
Q ss_pred ccccccC---CcccccCC--CCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccch
Q 037721 154 VPARKLN---NSLADLMK--SPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPY 228 (465)
Q Consensus 154 ~~~~~~~---~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 228 (465)
+++.... ....+.+. .+..+|+...+ ++..+++... .. ...+..+.+.......++++++||+.+||+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p-l~~~dlp~~~---~~-~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 152 HVQMLYDEKKYDVSELEDSEVELDVPSLTRP-YPVKCLPSVL---LS-KEWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred hhhhhccccccCccccCCCCceeECCCCCCC-CCHHHCCCcc---cC-HHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 6532211 00001110 11124441001 2222222211 00 00112233334456779999999999999999
Q ss_pred HHHHHhh--CCCCeEeeccCCCC-CCC-C---CcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCC
Q 037721 229 LDFVRTQ--FKKPVLLTGPLVNP-EPP-S---GELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLP 301 (465)
Q Consensus 229 ~~~~~~~--~~~~~~~vGp~~~~-~~~-~---~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~ 301 (465)
...+.+. ..++++.|||+ .. .+. . ...+.++.+|++.++++++|||||||+...+.+++.+++.+|+..+++
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl-~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPV-LHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred HHHHHhcccCCCCEEEeCCC-ccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 8888753 33579999999 43 221 1 234568999999998889999999999889999999999999999999
Q ss_pred eEEEEcCCCCC------CCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCcee
Q 037721 302 FFLVLNFPPNV------DGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLV 375 (465)
Q Consensus 302 ~i~~~~~~~~~------~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l 375 (465)
|||+++..... ....+....+|++|.++.++.. ++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 99999863210 0000012346899988766544 5669999999999999999999999999999999999999
Q ss_pred eccccccchhhHHH-HhhhhcceEEeeecC-------CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc-
Q 037721 376 LLPLKGDQFLNSKL-VAGDLKAGVEVNRRD-------HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN- 446 (465)
Q Consensus 376 ~~P~~~DQ~~na~~-v~~~~G~G~~l~~~~-------~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~- 446 (465)
++|+++||+.||++ +++. |+|+.++... ..+.+++++|.++|+++|.+ +++||+||+++++.+++
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~-----~~~~r~~a~~l~~~~~~a 458 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ-----DSDVRKRVKEMSEKCHVA 458 (481)
T ss_pred ecCccccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHH
Confidence 99999999999954 6665 9999997410 12368999999999999952 58999999999999985
Q ss_pred ---CCchHHHHHHHHHHHHhh
Q 037721 447 ---GQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 447 ---~~~~~~~~~~~~~~l~~~ 464 (465)
+|++.+++++|+++++++
T Consensus 459 v~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 459 LMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred hcCCChHHHHHHHHHHHHHhh
Confidence 377888999999999876
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.2e-58 Score=464.38 Aligned_cols=436 Identities=22% Similarity=0.310 Sum_probs=304.6
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCC---EEEEEeCCCChh-----hhhcccCCCCCeeEEEccCCCCCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGV---KVSFFSAPGNIP-----RIKSSLNLTPMADIIPLQIPHVDGLPPGL 80 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~V~~~~~~~~~~-----~i~~~g~~~~~~~~~~l~~~~~~~~~~~~ 80 (465)
++.||+++|+|++||++|+++||+.|+.+|. .||++++..... .+.......+.++|..+|.+. . +.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~-p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ--D-PPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC--C-Cccc
Confidence 5679999999999999999999999999983 567776543221 122111111359999998432 1 1111
Q ss_pred CCCCCCc-hHHHHHHHHHHHhhHHHHHHHHhhc------CCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHh
Q 037721 81 DSTSEMT-PHMAELLKQALDLMQPQIKTLLSQL------KPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLV 153 (465)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~------~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 153 (465)
+...... ..+............+.+.+++.+. +++|||+|.+.+|+..+ |+++|||+++|+++++..+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dV-A~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDV-GNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHH-HHHhCCCEEEEECccHHHHHHHH
Confidence 1001111 1222333333333334444443221 34899999999999999 99999999999999998877766
Q ss_pred cccccc-CCc----ccccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccch
Q 037721 154 VPARKL-NNS----LADLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPY 228 (465)
Q Consensus 154 ~~~~~~-~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 228 (465)
+.+... ... ....+. +..+|+.... ++..+++... ... ..+..+.+..+....++.+++|||++||+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~-~~~iPgl~~~-l~~~dlp~~~--~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEE-ELPIPGFVNS-VPTKVLPPGL--FMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHHhccccccccccCCCCC-eeECCCCCCC-CChhhCchhh--hCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 442111 100 000011 1124431000 2222222211 000 1122333333456778999999999999999
Q ss_pred HHHHHhhC--CCCeEeeccCCCCCCC--CC----cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCC
Q 037721 229 LDFVRTQF--KKPVLLTGPLVNPEPP--SG----ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGL 300 (465)
Q Consensus 229 ~~~~~~~~--~~~~~~vGp~~~~~~~--~~----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~ 300 (465)
+++++... -++++.|||+ .+... .. ....++.+||+.++++++|||||||....+.+++.+++.+|+..++
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl-~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPI-LSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHHHHhhcccCCeeEEeccc-cccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 99886531 1579999999 65321 11 1235799999999888999999999988999999999999999999
Q ss_pred CeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeecccc
Q 037721 301 PFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLK 380 (465)
Q Consensus 301 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~ 380 (465)
+|||+++...... .+....+|++|.++.+++++ +.+|+||.+||+|+++++|||||||||++||+++|||||+||++
T Consensus 311 ~flw~~~~~~~~~--~~~~~~lp~~~~er~~~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 311 RFLWSIRTNPAEY--ASPYEPLPEGFMDRVMGRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred cEEEEEecCcccc--cchhhhCChHHHHHhccCee-eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9999998642110 00134689999988777664 55999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcceEEeeec---CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc----CCchHHH
Q 037721 381 GDQFLNSKLVAGDLKAGVEVNRR---DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN----GQIQDKF 453 (465)
Q Consensus 381 ~DQ~~na~~v~~~~G~G~~l~~~---~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~ 453 (465)
+||+.||+++.+.||+|+.+... +.++.+++++|.++|+++|.+ +++||+||+++++.+++ +|++.++
T Consensus 388 ~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~-----~~~~r~~a~~~~~~~~~av~~gGsS~~~ 462 (475)
T PLN02167 388 AEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG-----EDVPRKKVKEIAEAARKAVMDGGSSFVA 462 (475)
T ss_pred ccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999998744444999998642 101257999999999999972 34899999999998875 4778999
Q ss_pred HHHHHHHHHh
Q 037721 454 IADFVKDLKA 463 (465)
Q Consensus 454 ~~~~~~~l~~ 463 (465)
+++|+++++.
T Consensus 463 l~~~v~~i~~ 472 (475)
T PLN02167 463 VKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.3e-46 Score=380.56 Aligned_cols=397 Identities=16% Similarity=0.192 Sum_probs=273.8
Q ss_pred CcEEEEe-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCC---CCCCCC--
Q 037721 10 QLHVVMF-PWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLP---PGLDST-- 83 (465)
Q Consensus 10 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~---~~~~~~-- 83 (465)
..||+++ |.++.+|..-+-+|+++|++|||+||++++..... .... ...+++.+.++... +.+. ......
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH--LCGNITEIDASLSV-EYFKKLVKSSAVFRK 95 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC--CCCCEEEEEcCCCh-HHHHHHHhhhhHHHh
Confidence 3468755 88999999999999999999999999997753211 1100 01235555543100 0000 000000
Q ss_pred -CCC--chH----HHHHHHHHHH--hhHHHHHHHHh--hcCCcEEEEcCCCccccccccccc-CCeeEEEecchHHHHHH
Q 037721 84 -SEM--TPH----MAELLKQALD--LMQPQIKTLLS--QLKPHFVFFDFTHYWLPGLVGSQL-GIKTVNFSVFSAISQAY 151 (465)
Q Consensus 84 -~~~--~~~----~~~~~~~~~~--~~~~~l~~~l~--~~~pD~vi~D~~~~~~~~~~A~~~-giP~v~~~~~~~~~~~~ 151 (465)
... ... ....+....+ ...+.+.++++ +.++|+||+|.+..++..+ |+.+ ++|+|.+++........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~l-a~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVF-SHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHH-HHHhCCCCEEEEcCCCCchhHH
Confidence 000 000 0011111111 12456678887 7789999999887777788 9999 99988877754432221
Q ss_pred HhccccccCCcccccCCCCCCCCC------CccCCCChhhhhhhhhh------hh----cCCCCch-hhh----hccccc
Q 037721 152 LVVPARKLNNSLADLMKSPDGFPA------TSITSLDEFVARDYLYV------YT----KFNGGPS-VYE----RGIQGV 210 (465)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~------~~----~~~~~~~-~~~----~~~~~~ 210 (465)
.... ..+.++.++|. ..|. +. .++.++... .. ..+..++ .+. ...+..
T Consensus 175 ~~~g---------g~p~~~syvP~~~~~~~~~Ms-f~-~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~ 243 (507)
T PHA03392 175 ETMG---------AVSRHPVYYPNLWRSKFGNLN-VW-ETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELR 243 (507)
T ss_pred Hhhc---------cCCCCCeeeCCcccCCCCCCC-HH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHH
Confidence 1110 02334455554 1222 22 233333210 00 0000111 111 122334
Q ss_pred CCccEEEEcCccccccchHHHHHhhCCCCeEeeccCCCCCC-CCCcchhhhccccCCCCCCeEEEEEeCCccc---CCHH
Q 037721 211 DGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLVNPEP-PSGELEERWAKWLCKYPPKSVIYCSFGSETF---LTVD 286 (465)
Q Consensus 211 ~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~-~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~---~~~~ 286 (465)
.+.+.+++|+.+.+|.+ +.+++++++|||+ ...+ ...++++++.+|++..+ +++|||||||... .+.+
T Consensus 244 ~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi-~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~ 315 (507)
T PHA03392 244 NRVQLLFVNVHPVFDNN------RPVPPSVQYLGGL-HLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNE 315 (507)
T ss_pred hCCcEEEEecCccccCC------CCCCCCeeeeccc-ccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHH
Confidence 57789999999988864 2678899999999 5533 33568899999998765 5799999999864 4678
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHH
Q 037721 287 QIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTE 366 (465)
Q Consensus 287 ~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~E 366 (465)
.+..++++++..+.+|||+++.... ...+|+ |+.+.+|+||.+||+|+.+++||||||+||++|
T Consensus 316 ~~~~~l~a~~~l~~~viw~~~~~~~-------~~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~E 379 (507)
T PHA03392 316 FLQMLLRTFKKLPYNVLWKYDGEVE-------AINLPA---------NVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDE 379 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEECCCcC-------cccCCC---------ceEEecCCCHHHHhcCCCCCEEEecCCcccHHH
Confidence 9999999999999999999875411 113444 999999999999999999999999999999999
Q ss_pred HHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc
Q 037721 367 AVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN 446 (465)
Q Consensus 367 al~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~ 446 (465)
|+++|||||++|+++||+.||+|++++ |+|+.++..+ +++++|.++|+++++ |++||+||+++++.+++
T Consensus 380 al~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~~----~t~~~l~~ai~~vl~------~~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 380 AIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTVT----VSAAQLVLAIVDVIE------NPKYRKNLKELRHLIRH 448 (507)
T ss_pred HHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccCC----cCHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 9999999864 899999999999999 89999999999999998
Q ss_pred CC--chHHHHHHH
Q 037721 447 GQ--IQDKFIADF 457 (465)
Q Consensus 447 ~~--~~~~~~~~~ 457 (465)
.+ +.++++.-+
T Consensus 449 ~p~~~~~~av~~i 461 (507)
T PHA03392 449 QPMTPLHKAIWYT 461 (507)
T ss_pred CCCCHHHHHHHHH
Confidence 76 345555433
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.9e-44 Score=356.39 Aligned_cols=387 Identities=16% Similarity=0.173 Sum_probs=266.8
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCC--CC-CCCCCCchHHHH
Q 037721 16 FPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPP--GL-DSTSEMTPHMAE 92 (465)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~~~~~~ 92 (465)
+.+|++||++|++.||++|++|||+|+|++++.+.+.++..| +.|..++. .... .. ...........+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAG-----AEFVLYGS----ALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcC-----CEEEecCC----cCccccccccccCcchHHHHH
Confidence 367999999999999999999999999999999999999998 89988872 1111 00 000011112223
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCCCCCC
Q 037721 93 LLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPDG 172 (465)
Q Consensus 93 ~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (465)
.+........+.+.+++++.+||+||+|.+++++..+ |+.+|||+|.+++.+.... ..+... + +.....
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~-A~~~giP~v~~~~~~~~~~---~~~~~~-~------~~~~~~ 140 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLL-ARKWDVPVISSFPTFAANE---EFEEMV-S------PAGEGS 140 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHH-HHHhCCCEEEEehhhcccc---cccccc-c------ccchhh
Confidence 3333333344566777788899999999988888888 9999999998865432110 000000 0 000000
Q ss_pred CCCCccCCCChh-hhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCCCCCC
Q 037721 173 FPATSITSLDEF-VARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLVNPEP 251 (465)
Q Consensus 173 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~ 251 (465)
............ ....+..++............+. ....+..+..+.+.|+++ ...++++++++||+ ...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~--~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~-~~~~ 212 (392)
T TIGR01426 141 AEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLA--APRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPC-IGDR 212 (392)
T ss_pred hhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHh--cCCcCcEEEeCChHhCCC-----ccccCCCeEEECCC-CCCc
Confidence 000000000000 01111112222211000111110 122333455555555542 34578899999998 5443
Q ss_pred CCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcC
Q 037721 252 PSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK 331 (465)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 331 (465)
. +...|....+++++||||+||......+.+..++++++..+++++|.++.+.+.. ....+|
T Consensus 213 ~------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~----~~~~~~-------- 274 (392)
T TIGR01426 213 K------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPA----DLGELP-------- 274 (392)
T ss_pred c------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChh----HhccCC--------
Confidence 2 1223766666788999999998766777888899999999999999987653211 111223
Q ss_pred CCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCH
Q 037721 332 DRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGK 411 (465)
Q Consensus 332 ~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 411 (465)
.|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||+++++. |+|+.+...+ +++
T Consensus 275 -~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~~----~~~ 346 (392)
T TIGR01426 275 -PNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPEE----VTA 346 (392)
T ss_pred -CCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecccc----CCH
Confidence 38889999999999999998 999999999999999999999999999999999999998 9999998763 899
Q ss_pred HHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 412 EDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 412 ~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
++|.++|+++|+ +++|+++++++++.+++.++..++++.+.+.++
T Consensus 347 ~~l~~ai~~~l~------~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 347 EKLREAVLAVLS------DPRYAERLRKMRAEIREAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHHHHhc------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 999999999999 899999999999999999888888887776654
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2e-47 Score=392.83 Aligned_cols=382 Identities=21% Similarity=0.293 Sum_probs=230.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCC-C-CCCCCchH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGL-D-STSEMTPH 89 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~ 89 (465)
||+++|. +.||+.++.+|+++|++|||+||++++.... .+...+ ...+++..++. +.+... . ........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK--PSNIRFETYPD----PYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T--------S-CCEEEE---------TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc--ccceeeEEEcC----CcchHHHhhhhHHHHHH
Confidence 6888885 7899999999999999999999999875321 222111 23466766652 221111 0 01110000
Q ss_pred ----------HHHHHHHH---HHhh---------HHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHH
Q 037721 90 ----------MAELLKQA---LDLM---------QPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAI 147 (465)
Q Consensus 90 ----------~~~~~~~~---~~~~---------~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~ 147 (465)
....+... .... .+.+.+.+++.++|++|+|.+.+++..+ |+.+++|.+.+.++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~l-a~~l~iP~i~~~s~~~~ 152 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLAL-AHYLGIPVIIISSSTPM 152 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHH-HHHHHHTHHHHHHCCSC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHH-HHHhcCCeEEEeccccc
Confidence 11111000 0000 1223344555689999999987777788 99999998865443222
Q ss_pred HHHHHhccccccCCcccccCCCCCCCCC------CccCCCChhhhhhhh-hh---------hhcCCCCch-hh---hhcc
Q 037721 148 SQAYLVVPARKLNNSLADLMKSPDGFPA------TSITSLDEFVARDYL-YV---------YTKFNGGPS-VY---ERGI 207 (465)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~-~~---------~~~~~~~~~-~~---~~~~ 207 (465)
..... .....+.++.+.|. ..+. +.. ++.++. .. ....+..+. .+ ....
T Consensus 153 ~~~~~---------~~~g~p~~psyvP~~~s~~~~~ms-f~~-Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PF00201_consen 153 YDLSS---------FSGGVPSPPSYVPSMFSDFSDRMS-FWQ-RIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFR 221 (500)
T ss_dssp SCCTC---------CTSCCCTSTTSTTCBCCCSGTTSS-SST---TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCH
T ss_pred chhhh---------hccCCCCChHHhccccccCCCccc-hhh-hhhhhhhhhhhccccccchhhHHHHHhhhcccccccH
Confidence 11000 00122334445554 1222 222 111111 10 111111111 00 1122
Q ss_pred cccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH-H
Q 037721 208 QGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV-D 286 (465)
Q Consensus 208 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~ 286 (465)
+.+.+.+.+++|+.+.++. +++ ..+++.+||++ ...+. .+++.++.+|++...++++|||||||....-+ +
T Consensus 222 ~~~~~~~l~l~ns~~~ld~-----prp-~~p~v~~vGgl-~~~~~-~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~ 293 (500)
T PF00201_consen 222 ELLSNASLVLINSHPSLDF-----PRP-LLPNVVEVGGL-HIKPA-KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEE 293 (500)
T ss_dssp HHHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC--S-----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHH
T ss_pred HHHHHHHHHhhhccccCcC-----Ccc-hhhcccccCcc-ccccc-cccccccchhhhccCCCCEEEEecCcccchhHHH
Confidence 2334566778888777764 233 34589999999 65543 56888999999985567899999999876444 4
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHH
Q 037721 287 QIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTE 366 (465)
Q Consensus 287 ~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~E 366 (465)
.++.++++++..+.+|||++... ....+|+ |+++.+|+||.+||.|+++++||||||+||++|
T Consensus 294 ~~~~~~~~~~~~~~~~iW~~~~~--------~~~~l~~---------n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~E 356 (500)
T PF00201_consen 294 KLKEIAEAFENLPQRFIWKYEGE--------PPENLPK---------NVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQE 356 (500)
T ss_dssp HHHHHHHHHHCSTTEEEEEETCS--------HGCHHHT---------TEEEESS--HHHHHTSTTEEEEEES--HHHHHH
T ss_pred HHHHHHHHHhhCCCccccccccc--------ccccccc---------eEEEeccccchhhhhcccceeeeeccccchhhh
Confidence 58889999999999999999763 2334444 899999999999999999999999999999999
Q ss_pred HHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc
Q 037721 367 AVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN 446 (465)
Q Consensus 367 al~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~ 446 (465)
|+++|||||++|+++||+.||++++++ |+|+.++..+ +|.++|.++|+++|+ |++|++||+++++.+++
T Consensus 357 a~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~----~~~~~l~~ai~~vl~------~~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 357 ALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKND----LTEEELRAAIREVLE------NPSYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-----SHHHHHHHHHHHHH------SHHHHHHHHHHHHTTT-
T ss_pred hhhccCCccCCCCcccCCccceEEEEE-eeEEEEEecC----CcHHHHHHHHHHHHh------hhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 9999999874 999999999999999 99999999999999997
Q ss_pred CCc
Q 037721 447 GQI 449 (465)
Q Consensus 447 ~~~ 449 (465)
.+.
T Consensus 426 ~p~ 428 (500)
T PF00201_consen 426 RPI 428 (500)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.1e-42 Score=343.96 Aligned_cols=382 Identities=15% Similarity=0.110 Sum_probs=252.7
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCC----CCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDST----SEM 86 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~ 86 (465)
+||+|+++|+.||++|++.||++|++|||+|+|++++.+...++..| ++|.+++... +......... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAG-----LEFVPVGGDP-DELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcC-----CceeeCCCCH-HHHHhhhhhcccccccc
Confidence 48999999999999999999999999999999999999999999888 8998886210 0000000000 000
Q ss_pred ch---HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcc
Q 037721 87 TP---HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSL 163 (465)
Q Consensus 87 ~~---~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (465)
.. .....+........+.+.+.+++++||+||+|.+++++..+ |+.+|||++.+++++........
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~-A~~~giP~v~~~~~~~~~~~~~~---------- 143 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVA-AEALGIPAVRLLLGPDTPTSAFP---------- 143 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHH-HHHhCCCeEEeecccCCccccCC----------
Confidence 11 12223333344455566667777899999999988888888 99999999999876543211100
Q ss_pred cccCCCCCCCCC-CccCCCChhhhhhhhh----hhh--cCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhC
Q 037721 164 ADLMKSPDGFPA-TSITSLDEFVARDYLY----VYT--KFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQF 236 (465)
Q Consensus 164 ~~~~~~~~~~p~-~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (465)
++ . +. +... +.......+.. ... ....++..... .....+..+....+.+.+ ....+
T Consensus 144 -----~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (401)
T cd03784 144 -----PP-L-GRANLRL-YALLEAELWQDLLGAWLRARRRRLGLPPLSL---LDGSDVPELYGFSPAVLP-----PPPDW 207 (401)
T ss_pred -----Cc-c-chHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---cccCCCcEEEecCcccCC-----CCCCc
Confidence 00 0 00 0000 00000000000 000 00001100000 000111222222222211 12245
Q ss_pred CCCeEeec-cCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhcCCCeEEEEcCCCCCCC
Q 037721 237 KKPVLLTG-PLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV-DQIKELAIGLEITGLPFFLVLNFPPNVDG 314 (465)
Q Consensus 237 ~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~ 314 (465)
+++..++| ++ ...+.....+.++..|++. .+++||||+||...... +.+..++++++..+.++||+++.....
T Consensus 208 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~-- 282 (401)
T cd03784 208 PRFDLVTGYGF-RDVPYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG-- 282 (401)
T ss_pred cccCcEeCCCC-CCCCCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc--
Confidence 56667775 44 3333223345566667765 36799999999987554 566778999998899999998875221
Q ss_pred cccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhh
Q 037721 315 QSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDL 394 (465)
Q Consensus 315 ~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 394 (465)
...+ ..|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||+++++.
T Consensus 283 ----~~~~---------~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~- 346 (401)
T cd03784 283 ----AEDL---------PDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL- 346 (401)
T ss_pred ----ccCC---------CCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-
Confidence 1122 348999999999999999888 999999999999999999999999999999999999998
Q ss_pred cceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 037721 395 KAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADF 457 (465)
Q Consensus 395 G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 457 (465)
|+|+.++.. .+++++|.++|+++++ ++ ++++++++++.+++.++..++++.+
T Consensus 347 G~g~~l~~~----~~~~~~l~~al~~~l~------~~-~~~~~~~~~~~~~~~~g~~~~~~~i 398 (401)
T cd03784 347 GAGPALDPR----ELTAERLAAALRRLLD------PP-SRRRAAALLRRIREEDGVPSAADVI 398 (401)
T ss_pred CCCCCCCcc----cCCHHHHHHHHHHHhC------HH-HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 999999876 3899999999999998 54 6667778888887776666666554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-41 Score=335.30 Aligned_cols=398 Identities=18% Similarity=0.183 Sum_probs=255.5
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchH
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
++||+|+..|+.||++|++.|+++|.++||+|+|+|++.+.+.++++| +.|..++.. +...............
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag-----~~f~~~~~~--~~~~~~~~~~~~~~~~ 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG-----LAFVAYPIR--DSELATEDGKFAGVKS 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC-----cceeecccc--CChhhhhhhhhhccch
Confidence 368999999999999999999999999999999999999999999998 888888732 1100111111111111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCCC
Q 037721 90 MAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKS 169 (465)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (465)
... ...........+.+.+.+..||+++.|.. .+...+ ++..++|++...............+...... ......+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 149 (406)
T COG1819 74 FRR-LLQQFKKLIRELLELLRELEPDLVVDDAR-LSLGLA-ARLLGIPVVGINVAPYTPLPAAGLPLPPVGI-AGKLPIP 149 (406)
T ss_pred hHH-HhhhhhhhhHHHHHHHHhcchhhhhcchh-hhhhhh-hhhcccchhhhhhhhccCCcccccCcccccc-ccccccc
Confidence 111 12222234456777888889999999984 344466 8999999887654433322111100000000 0000111
Q ss_pred CCCCCCCccC-CCChhhhhhhhhhhhcCCCCchh-hhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 170 PDGFPATSIT-SLDEFVARDYLYVYTKFNGGPSV-YERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 170 ~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
...++...+. ....... +.....+....+.. ..+....+.......+...+...++. ..+|....++||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~- 221 (406)
T COG1819 150 LYPLPPRLVRPLIFARSW--LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG-----DRLPFIGPYIGPL- 221 (406)
T ss_pred ccccChhhccccccchhh--hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC-----CCCCCCcCccccc-
Confidence 1111110000 0000000 00000011111100 00001111111111111111110000 1234456667777
Q ss_pred CCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhh
Q 037721 248 NPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFM 327 (465)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~ 327 (465)
...+ ..+...| ...++++||||+||.... .+.+..+++++...+.++|+.++.. +. ....+|.
T Consensus 222 ~~~~-----~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~-----~~~~~p~--- 284 (406)
T COG1819 222 LGEA-----ANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD-----TLVNVPD--- 284 (406)
T ss_pred cccc-----cccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc-----ccccCCC---
Confidence 3332 2222233 233477999999999866 8888889999999999999999772 21 1455666
Q ss_pred hhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCC
Q 037721 328 DRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDG 407 (465)
Q Consensus 328 ~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (465)
|+.+..|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||.++++. |+|+.+...
T Consensus 285 ------n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~---- 351 (406)
T COG1819 285 ------NVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFE---- 351 (406)
T ss_pred ------ceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCcc----
Confidence 8999999999999999999 999999999999999999999999999999999999998 999999986
Q ss_pred ccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 408 HFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 408 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
.++++.|+++|+++|+ +++|+++++++++.+++.++..++.+.+.+..+
T Consensus 352 ~l~~~~l~~av~~vL~------~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 352 ELTEERLRAAVNEVLA------DDSYRRAAERLAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred cCCHHHHHHHHHHHhc------CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHh
Confidence 3999999999999999 999999999999999999886656555555444
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.2e-40 Score=340.62 Aligned_cols=404 Identities=23% Similarity=0.319 Sum_probs=245.1
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc-ccCCCCCeeEEE---ccCCC-CCCCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS-SLNLTPMADIIP---LQIPH-VDGLPPGLDSTS 84 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~-~g~~~~~~~~~~---l~~~~-~~~~~~~~~~~~ 84 (465)
+.+++++++|++||++|+..+|+.|+++||+||++++......... .. ........ .+... .++++...+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSK--SKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCccc--ceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 5689999999999999999999999999999999998876554322 11 00011111 11000 011211111000
Q ss_pred -CCchHHHHHHHHHHHhhHHHHHHHHhh--cCCcEEEEcCCCccccccccccc-CCeeEEEecchHHHHHHHhccccccC
Q 037721 85 -EMTPHMAELLKQALDLMQPQIKTLLSQ--LKPHFVFFDFTHYWLPGLVGSQL-GIKTVNFSVFSAISQAYLVVPARKLN 160 (465)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~vi~D~~~~~~~~~~A~~~-giP~v~~~~~~~~~~~~~~~~~~~~~ 160 (465)
........................... .++|++|+|.+..|...+ |... +++..++....+....+..+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~- 160 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLL-AIPSFVIPLLSFPTSSAVLLALGLPSPLSY- 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHh-cccceEEEeecccCchHHHHhcCCcCcccc-
Confidence 000000011111111111222222222 239999999976666666 6665 4888888877776654433221110
Q ss_pred CcccccCCCCCCCCCCccCCCChhhhhhhh-----hhhhcC--CCC----c-hhhhh-------cccccCCccEEEEcCc
Q 037721 161 NSLADLMKSPDGFPATSITSLDEFVARDYL-----YVYTKF--NGG----P-SVYER-------GIQGVDGCDVLAIKTC 221 (465)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~~~~--~~~----~-~~~~~-------~~~~~~~~~~~~~~s~ 221 (465)
.+..........+. +. ....++. ...... ... . ..... ......+.+..++++.
T Consensus 161 -----~p~~~~~~~~~~~~-~~-~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~ 233 (496)
T KOG1192|consen 161 -----VPSPFSLSSGDDMS-FP-ERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSN 233 (496)
T ss_pred -----cCcccCccccccCc-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccC
Confidence 00000000000010 11 0111111 000000 000 0 00001 1112233444455554
Q ss_pred cccccchHHHHHhhCCCCeEeeccCCCCCCCCCcchhhhccccCCCCCC--eEEEEEeCCcc---cCCHHHHHHHHHHHH
Q 037721 222 NEMEGPYLDFVRTQFKKPVLLTGPLVNPEPPSGELEERWAKWLCKYPPK--SVIYCSFGSET---FLTVDQIKELAIGLE 296 (465)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~~i~~al~ 296 (465)
..++.. .....++++.|||+ ........ .....+|++..+.. ++|||||||+. ..+.++...++.+++
T Consensus 234 ~~~~~~-----~~~~~~~v~~IG~l-~~~~~~~~-~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~ 306 (496)
T KOG1192|consen 234 PLLDFE-----PRPLLPKVIPIGPL-HVKDSKQK-SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALE 306 (496)
T ss_pred cccCCC-----CCCCCCCceEECcE-EecCcccc-ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHH
Confidence 333321 12235789999999 55522111 11233455444433 79999999998 688999999999999
Q ss_pred hc-CCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhh-hccccceeecccCChhhHHHHHHhCCce
Q 037721 297 IT-GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLI-LRHESVGCYVCHSGFSSVTEAVISDCQL 374 (465)
Q Consensus 297 ~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~v-L~~~~~~~~ItHgG~~s~~Eal~~GvP~ 374 (465)
.. ++.|+|++..... ..+++++.++ ...|++..+|+||.++ |.|+++++|||||||||++|++++||||
T Consensus 307 ~~~~~~FiW~~~~~~~--------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~ 377 (496)
T KOG1192|consen 307 SLQGVTFLWKYRPDDS--------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPM 377 (496)
T ss_pred hCCCceEEEEecCCcc--------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCce
Confidence 99 8899999987521 1134444432 3458888899999998 5999999999999999999999999999
Q ss_pred eeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchH
Q 037721 375 VLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQD 451 (465)
Q Consensus 375 l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~ 451 (465)
|++|+++||+.||+++++. |.|..+...+ ++.+.+.+++.+++. +++|+++++++++..++.+...
T Consensus 378 v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~----~~~~~~~~~~~~il~------~~~y~~~~~~l~~~~~~~p~~~ 443 (496)
T KOG1192|consen 378 VCVPLFGDQPLNARLLVRH-GGGGVLDKRD----LVSEELLEAIKEILE------NEEYKEAAKRLSEILRDQPISP 443 (496)
T ss_pred ecCCccccchhHHHHHHhC-CCEEEEehhh----cCcHHHHHHHHHHHc------ChHHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999 7766666654 666669999999999 9999999999999998775554
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3.9e-25 Score=215.53 Aligned_cols=320 Identities=16% Similarity=0.112 Sum_probs=202.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh--hhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP--RIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~--~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
+|++.+.++.||+.|.+++|++|.++||+|+|++.....+ .+.+.| +.+..++. .++.. . ....
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g-----~~~~~~~~---~~l~~----~--~~~~ 68 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKEN-----IPYYSISS---GKLRR----Y--FDLK 68 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccC-----CcEEEEec---cCcCC----C--chHH
Confidence 6999999999999999999999999999999999776543 234444 77777751 12211 0 1111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC--cccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccC
Q 037721 90 MAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH--YWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLM 167 (465)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (465)
.+........ ..-....++++.+||+||+.... ..+..+ |..+++|+++...
T Consensus 69 ~~~~~~~~~~-~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~a-a~~~~~p~~i~e~------------------------ 122 (352)
T PRK12446 69 NIKDPFLVMK-GVMDAYVRIRKLKPDVIFSKGGFVSVPVVIG-GWLNRVPVLLHES------------------------ 122 (352)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCCEEEecCchhhHHHHHH-HHHcCCCEEEECC------------------------
Confidence 1111111111 22344567899999999986522 224677 9999999987522
Q ss_pred CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCC-CCeEeeccC
Q 037721 168 KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFK-KPVLLTGPL 246 (465)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~ 246 (465)
...|+ .. ..+. .+.++.++ .++++- ...++ .++..+|+-
T Consensus 123 ---n~~~g-----~~----nr~~-------------------~~~a~~v~-~~f~~~--------~~~~~~~k~~~tG~P 162 (352)
T PRK12446 123 ---DMTPG-----LA----NKIA-------------------LRFASKIF-VTFEEA--------AKHLPKEKVIYTGSP 162 (352)
T ss_pred ---CCCcc-----HH----HHHH-------------------HHhhCEEE-EEccch--------hhhCCCCCeEEECCc
Confidence 11222 10 1111 11222222 222211 11222 468889965
Q ss_pred CCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChh
Q 037721 247 VNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV-DQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPG 325 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~ 325 (465)
..+.-.....+...+.++..+++++|+|..||++.... +.+..++..+. .+++++|.+|.... ...+..
T Consensus 163 -vr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~-------~~~~~~- 232 (352)
T PRK12446 163 -VREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNL-------DDSLQN- 232 (352)
T ss_pred -CCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchH-------HHHHhh-
Confidence 32221111111222223333457799999999986554 44444555553 24888999886521 110100
Q ss_pred hhhhcCCCceEEeccc-c-hHhhhccccceeecccCChhhHHHHHHhCCceeecccc-----ccchhhHHHHhhhhcceE
Q 037721 326 FMDRVKDRGVVHTGWV-Q-QQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLK-----GDQFLNSKLVAGDLKAGV 398 (465)
Q Consensus 326 ~~~~~~~~nv~~~~~~-p-q~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~-----~DQ~~na~~v~~~~G~G~ 398 (465)
..++.+..|+ + ..++|.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++. |+|.
T Consensus 233 ------~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~ 303 (352)
T PRK12446 233 ------KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYAS 303 (352)
T ss_pred ------cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEE
Confidence 1244555777 4 4578999998 99999999999999999999999974 4899999999999 9999
Q ss_pred EeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHH
Q 037721 399 EVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKW 439 (465)
Q Consensus 399 ~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~ 439 (465)
.+...+ ++++.|.+++.++++| .+.+++++++
T Consensus 304 ~l~~~~----~~~~~l~~~l~~ll~~-----~~~~~~~~~~ 335 (352)
T PRK12446 304 VLYEED----VTVNSLIKHVEELSHN-----NEKYKTALKK 335 (352)
T ss_pred Ecchhc----CCHHHHHHHHHHHHcC-----HHHHHHHHHH
Confidence 998764 8999999999999982 2355544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=2.3e-25 Score=215.87 Aligned_cols=309 Identities=13% Similarity=0.124 Sum_probs=196.4
Q ss_pred cEEEEecCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchH
Q 037721 11 LHVVMFPWF-AFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 11 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
+||+|...+ |.||+.+++.||++| |||+|+|++.....+.+.+. +.+..++.. .+... ....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~-~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------FPVREIPGL---GPIQE-NGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------cCEEEccCc---eEecc-CCccchHHH
Confidence 488886666 999999999999999 59999999999776666432 455555411 11111 111111111
Q ss_pred HHHHH--HHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccC
Q 037721 90 MAELL--KQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLM 167 (465)
Q Consensus 90 ~~~~~--~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (465)
..... ..........+.+++++.+||+||+|. .+.+..+ |+..|+|++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~a-a~~~giP~i~i~~~~~~~~------------------ 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALA-ARRAGIPVIVISNQYWFLH------------------ 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHH-HHhcCCCEEEEEehHHccc------------------
Confidence 11111 112334456677888899999999997 4556778 9999999998876553321
Q ss_pred CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 168 KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
+..+++. . .....+. .. ..... ....++..+..++. ... ....++.++||+
T Consensus 129 -~~~~~~~------~-~~~~~~~---~~------~~~~~--~~~~~~~~l~~~~~-~~~--------~~~~~~~~~~p~- 179 (318)
T PF13528_consen 129 -PNFWLPW------D-QDFGRLI---ER------YIDRY--HFPPADRRLALSFY-PPL--------PPFFRVPFVGPI- 179 (318)
T ss_pred -ccCCcch------h-hhHHHHH---HH------hhhhc--cCCcccceecCCcc-ccc--------cccccccccCch-
Confidence 0011110 0 0001110 00 00000 12334444443332 110 111246678888
Q ss_pred CCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcC-CCeEEEEcCCCCCCCcccccccCChhh
Q 037721 248 NPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITG-LPFFLVLNFPPNVDGQSELVRTLPPGF 326 (465)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~lp~~~ 326 (465)
....... ... .+++.|+|+||+.... .++++++..+ ++|++. +... ...
T Consensus 180 ~~~~~~~--------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~--------~~~----- 229 (318)
T PF13528_consen 180 IRPEIRE--------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA--------ADP----- 229 (318)
T ss_pred hcccccc--------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--------ccc-----
Confidence 4332111 111 2345899999987633 6667776665 667666 4431 111
Q ss_pred hhhcCCCceEEeccc--chHhhhccccceeecccCChhhHHHHHHhCCceeeccc--cccchhhHHHHhhhhcceEEeee
Q 037721 327 MDRVKDRGVVHTGWV--QQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL--KGDQFLNSKLVAGDLKAGVEVNR 402 (465)
Q Consensus 327 ~~~~~~~nv~~~~~~--pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~--~~DQ~~na~~v~~~~G~G~~l~~ 402 (465)
...|+.+..|. ...++|..+++ +|||||+||++||+++|+|+|++|. ..||..||+.+++. |+|..++.
T Consensus 230 ----~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~ 302 (318)
T PF13528_consen 230 ----RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQ 302 (318)
T ss_pred ----cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEccc
Confidence 13488888876 45678999998 9999999999999999999999999 78999999999998 99999987
Q ss_pred cCCCCccCHHHHHHHHHHh
Q 037721 403 RDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 403 ~~~~~~~~~~~l~~ai~~l 421 (465)
. .++++.|+++|+++
T Consensus 303 ~----~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 303 E----DLTPERLAEFLERL 317 (318)
T ss_pred c----cCCHHHHHHHHhcC
Confidence 6 49999999999875
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=7.9e-23 Score=197.88 Aligned_cols=306 Identities=15% Similarity=0.142 Sum_probs=172.8
Q ss_pred EEEEecC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCee-EEEccCCCCCCCCCCCCCCCCCchH
Q 037721 12 HVVMFPW-FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMAD-IIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 12 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
||++... .|.||+.|.++|+++|.+ ||+|+|++.......+...+ +. +..+|.. .+. ......+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~-----~~~~~~~p~~---~~~-~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG-----FKVFETFPGI---KLK-GEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc-----CcceeccCCc---eEe-ecCCcCcHHHH
Confidence 4667444 477999999999999999 99999999888555566554 33 3333210 010 00111111111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCCC
Q 037721 90 MAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKS 169 (465)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (465)
... .............+++++.+||+||+|. .+.+..+ |+.+|||++.+..+....
T Consensus 71 l~~-~~~~~~~~~~~~~~~l~~~~pDlVi~d~-~~~~~~a-A~~~~iP~i~i~~q~~~~--------------------- 126 (321)
T TIGR00661 71 LRN-KEYSPKKAIRREINIIREYNPDLIISDF-EYSTVVA-AKLLKIPVICISNQNYTR--------------------- 126 (321)
T ss_pred HHh-hccccHHHHHHHHHHHHhcCCCEEEECC-chHHHHH-HHhcCCCEEEEecchhhc---------------------
Confidence 110 0011112334556788999999999995 6677788 999999999876532110
Q ss_pred CCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeE-eeccCCC
Q 037721 170 PDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVL-LTGPLVN 248 (465)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~-~vGp~~~ 248 (465)
+|. . .. ....... ..+..+ ...++......++.... ..|+.+. .-+|.
T Consensus 127 ---~~~-~---~~--~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~-- 175 (321)
T TIGR00661 127 ---YPL-K---TD--LIVYPTM---------AALRIF---NERCERFIVPDYPFPYT--------ICPKIIKNMEGPL-- 175 (321)
T ss_pred ---CCc-c---cc--hhHHHHH---------HHHHHh---ccccceEeeecCCCCCC--------CCccccccCCCcc--
Confidence 011 0 00 0000000 000011 11122222222211110 0011000 00122
Q ss_pred CCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhh
Q 037721 249 PEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMD 328 (465)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~ 328 (465)
...+...|... +++.|+|.+|+.. ...++++++..+. +.++++... . ....++
T Consensus 176 -------~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~-~-----~~~~~~----- 228 (321)
T TIGR00661 176 -------IRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE-V-----AKNSYN----- 228 (321)
T ss_pred -------cchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC-C-----CccccC-----
Confidence 11111122221 2457888888854 2345667765542 233332211 0 011222
Q ss_pred hcCCCceEEecccc--hHhhhccccceeecccCChhhHHHHHHhCCceeeccccc--cchhhHHHHhhhhcceEEeeecC
Q 037721 329 RVKDRGVVHTGWVQ--QQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKG--DQFLNSKLVAGDLKAGVEVNRRD 404 (465)
Q Consensus 329 ~~~~~nv~~~~~~p--q~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~ 404 (465)
.|+.+.+|.| ..+.|+.+++ +|||||++|++||+++|+|++++|..+ ||..||+.++++ |+|+.++..+
T Consensus 229 ----~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~ 301 (321)
T TIGR00661 229 ----ENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKE 301 (321)
T ss_pred ----CCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhh
Confidence 3888889997 4566777777 999999999999999999999999854 899999999999 9999998753
Q ss_pred CCCccCHHHHHHHHHHhhc
Q 037721 405 HDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 405 ~~~~~~~~~l~~ai~~ll~ 423 (465)
+ ++.+++.+++.
T Consensus 302 ----~---~~~~~~~~~~~ 313 (321)
T TIGR00661 302 ----L---RLLEAILDIRN 313 (321)
T ss_pred ----H---HHHHHHHhccc
Confidence 3 66667767776
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=5.8e-22 Score=190.99 Aligned_cols=309 Identities=17% Similarity=0.177 Sum_probs=193.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCCChhh--hhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGV-KVSFFSAPGNIPR--IKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh-~V~~~~~~~~~~~--i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
+|++...++.||+.|.++|+++|.++|+ +|.+..+....+. .+..+ +.+..++. .++..... ..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~-----~~~~~I~~---~~~~~~~~----~~- 68 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYG-----IEFELIPS---GGLRRKGS----LK- 68 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccC-----ceEEEEec---ccccccCc----HH-
Confidence 6889999999999999999999999999 5777755544433 23333 77777762 12211100 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcC--CCcccccccccccCCeeEEEecchHHHHHHHhccccccCCccccc
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDF--THYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADL 166 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~--~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (465)
.....+. .-.......+++++.+||+||+-. .+..+..+ |..+|||++.--
T Consensus 69 ~~~~~~~--~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~A-a~~~~iPv~ihE------------------------ 121 (357)
T COG0707 69 LLKAPFK--LLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIA-AKLLGIPVIIHE------------------------ 121 (357)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCEEEecCCccccHHHHH-HHhCCCCEEEEe------------------------
Confidence 0000111 111335678899999999999844 34444567 999999998741
Q ss_pred CCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeecc-
Q 037721 167 MKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGP- 245 (465)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp- 245 (465)
.+..|+ ..+..+.. .++. +..++++.+. + .-+.+++.+|-
T Consensus 122 ---qn~~~G-----~ank~~~~-----------------------~a~~-V~~~f~~~~~-~------~~~~~~~~tG~P 162 (357)
T COG0707 122 ---QNAVPG-----LANKILSK-----------------------FAKK-VASAFPKLEA-G------VKPENVVVTGIP 162 (357)
T ss_pred ---cCCCcc-----hhHHHhHH-----------------------hhce-eeeccccccc-c------CCCCceEEecCc
Confidence 233333 11111111 1111 1222222110 0 11235777782
Q ss_pred CCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCCh
Q 037721 246 LVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV-DQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPP 324 (465)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~ 324 (465)
+ .++-. . .+..-...... .++++|+|..||++...- +.+..+...+.. ++++++.++... -+
T Consensus 163 v-r~~~~-~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~------------~~ 225 (357)
T COG0707 163 V-RPEFE-E-LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND------------LE 225 (357)
T ss_pred c-cHHhh-c-cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch------------HH
Confidence 3 11110 1 11111111111 157799999999886442 333334444433 578888887652 11
Q ss_pred hhhhhcCCCc-eEEecccchH-hhhccccceeecccCChhhHHHHHHhCCceeeccc-c---ccchhhHHHHhhhhcceE
Q 037721 325 GFMDRVKDRG-VVHTGWVQQQ-LILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL-K---GDQFLNSKLVAGDLKAGV 398 (465)
Q Consensus 325 ~~~~~~~~~n-v~~~~~~pq~-~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~-~---~DQ~~na~~v~~~~G~G~ 398 (465)
.........+ +.+..|.+++ ++++.+|+ +||++|.+|+.|++++|+|+|.+|. . .||..||+.+++. |.|.
T Consensus 226 ~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~ 302 (357)
T COG0707 226 ELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAAL 302 (357)
T ss_pred HHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEE
Confidence 2222223334 7788888764 58888888 9999999999999999999999997 3 4899999999999 9999
Q ss_pred EeeecCCCCccCHHHHHHHHHHhhc
Q 037721 399 EVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 399 ~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.++..+ +|.+++.+.|.++++
T Consensus 303 ~i~~~~----lt~~~l~~~i~~l~~ 323 (357)
T COG0707 303 VIRQSE----LTPEKLAELILRLLS 323 (357)
T ss_pred Eecccc----CCHHHHHHHHHHHhc
Confidence 999885 999999999999998
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=1.4e-18 Score=171.10 Aligned_cols=342 Identities=14% Similarity=0.087 Sum_probs=207.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC--hhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN--IPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~--~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
+||+|+..+..||....+.|+++|.++||+|++++.+.. ....+..| ++++.++.+ +.... ...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g-----~~~~~~~~~---~~~~~-----~~~- 67 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAG-----IEFHFIPSG---GLRRK-----GSL- 67 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCC-----CcEEEEecc---CcCCC-----ChH-
Confidence 479999998889999999999999999999999998653 22223334 677777521 11110 001
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCC-Ccc-cccccccccCCeeEEEecchHHHHHHHhccccccCCccccc
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFT-HYW-LPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADL 166 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~-~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (465)
........ .-.....+.+++++.+||+|++... ..+ +..+ ++..++|+|.....
T Consensus 68 ~~l~~~~~-~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~-~~~~~~p~v~~~~~---------------------- 123 (357)
T PRK00726 68 ANLKAPFK-LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLA-ARLLGIPLVIHEQN---------------------- 123 (357)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHH-HHHcCCCEEEEcCC----------------------
Confidence 11111111 1123356778889999999999862 222 3345 77789998853110
Q ss_pred CCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccC
Q 037721 167 MKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPL 246 (465)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~ 246 (465)
..+. ....+. ...++.++..+-..+ ...-+.+++++|+.
T Consensus 124 -----~~~~---------~~~r~~-------------------~~~~d~ii~~~~~~~--------~~~~~~~i~vi~n~ 162 (357)
T PRK00726 124 -----AVPG---------LANKLL-------------------ARFAKKVATAFPGAF--------PEFFKPKAVVTGNP 162 (357)
T ss_pred -----CCcc---------HHHHHH-------------------HHHhchheECchhhh--------hccCCCCEEEECCC
Confidence 0010 000000 012233332221100 00123567777754
Q ss_pred CCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHH-HHHHHHhcCC--CeEEEEcCCCCCCCcccccccCC
Q 037721 247 VNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKE-LAIGLEITGL--PFFLVLNFPPNVDGQSELVRTLP 323 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~-i~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~lp 323 (465)
............ .+ +...++.++|++..|+.. ...+.. +.++++.... .+++.+|.+..
T Consensus 163 -v~~~~~~~~~~~-~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------------ 224 (357)
T PRK00726 163 -VREEILALAAPP-AR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDL------------ 224 (357)
T ss_pred -CChHhhcccchh-hh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcH------------
Confidence 221110000000 01 122223446776556543 222222 3355443322 44566666521
Q ss_pred hhhhhhc-CCCceEEecccc-hHhhhccccceeecccCChhhHHHHHHhCCceeeccc----cccchhhHHHHhhhhcce
Q 037721 324 PGFMDRV-KDRGVVHTGWVQ-QQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL----KGDQFLNSKLVAGDLKAG 397 (465)
Q Consensus 324 ~~~~~~~-~~~nv~~~~~~p-q~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G 397 (465)
+.+.+.. .+-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|
T Consensus 225 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g 301 (357)
T PRK00726 225 EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAA 301 (357)
T ss_pred HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCE
Confidence 1111111 111378889984 5689999999 9999999999999999999999996 47899999999999 999
Q ss_pred EEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 398 VEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 398 ~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
..++..+ ++++.|.++|.++++ ++++++++.+-+....+..+..+.++.+++.++
T Consensus 302 ~~~~~~~----~~~~~l~~~i~~ll~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 302 LLIPQSD----LTPEKLAEKLLELLS------DPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred EEEEccc----CCHHHHHHHHHHHHc------CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 9998763 789999999999999 888888877777777666677777777776654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=9e-18 Score=164.96 Aligned_cols=328 Identities=16% Similarity=0.121 Sum_probs=193.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh--hhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR--IKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~--i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
+|++...++.||....+.|++.|.++||+|++++....... .+..| +++..++.+ +.... .....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~-----~~~~~ 67 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAG-----IPLHTIPVG---GLRRK-----GSLKK 67 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccC-----CceEEEEec---CcCCC-----ChHHH
Confidence 48888999999999999999999999999999987643211 11122 666666521 11110 00001
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCC--CcccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccC
Q 037721 90 MAELLKQALDLMQPQIKTLLSQLKPHFVFFDFT--HYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLM 167 (465)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (465)
....+ . .-.....+.+++++.+||+|++... ...+..+ |...++|++.....
T Consensus 68 ~~~~~-~-~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~-a~~~~~p~v~~~~~----------------------- 121 (350)
T cd03785 68 LKAPF-K-LLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLA-AKLLGIPLVIHEQN----------------------- 121 (350)
T ss_pred HHHHH-H-HHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHH-HHHhCCCEEEEcCC-----------------------
Confidence 11111 1 1123345678888899999998652 2223456 88889998853110
Q ss_pred CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 168 KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
..++ . ...+ ....++.++..+-...+. ..+.++.++|..
T Consensus 122 ----~~~~-----~----~~~~-------------------~~~~~~~vi~~s~~~~~~--------~~~~~~~~i~n~- 160 (350)
T cd03785 122 ----AVPG-----L----ANRL-------------------LARFADRVALSFPETAKY--------FPKDKAVVTGNP- 160 (350)
T ss_pred ----CCcc-----H----HHHH-------------------HHHhhCEEEEcchhhhhc--------CCCCcEEEECCC-
Confidence 0110 0 0000 012245555433211110 113467777754
Q ss_pred CCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhh
Q 037721 248 NPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV-DQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGF 326 (465)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~ 326 (465)
........ ... ...+...+++.+|++..|+...... +.+..++..+...+..+++.++.+. .+.+.+..
T Consensus 161 v~~~~~~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--------~~~l~~~~ 230 (350)
T cd03785 161 VREEILAL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--------LEEVKKAY 230 (350)
T ss_pred CchHHhhh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--------HHHHHHHH
Confidence 22110000 111 2222323345566666666543222 2233344444434455666766541 11111111
Q ss_pred hhhcCCCceEEeccc-chHhhhccccceeecccCChhhHHHHHHhCCceeeccc----cccchhhHHHHhhhhcceEEee
Q 037721 327 MDRVKDRGVVHTGWV-QQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL----KGDQFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 327 ~~~~~~~nv~~~~~~-pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~ 401 (465)
... ..|+.+.+|+ +..++|+.+++ +|+++|.++++||+++|+|+|+.|. ..+|..|+..+.+. |.|..++
T Consensus 231 -~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~ 305 (350)
T cd03785 231 -EEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIP 305 (350)
T ss_pred -hcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEe
Confidence 111 3589999998 45678999998 9999999999999999999999985 46899999999998 9999998
Q ss_pred ecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHH
Q 037721 402 RRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFL 444 (465)
Q Consensus 402 ~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~ 444 (465)
.. ..+.+++.++|+++++ +++.++++.+-+...
T Consensus 306 ~~----~~~~~~l~~~i~~ll~------~~~~~~~~~~~~~~~ 338 (350)
T cd03785 306 QE----ELTPERLAAALLELLS------DPERLKAMAEAARSL 338 (350)
T ss_pred cC----CCCHHHHHHHHHHHhc------CHHHHHHHHHHHHhc
Confidence 64 2689999999999998 776665555444443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=5.1e-16 Score=152.39 Aligned_cols=324 Identities=15% Similarity=0.155 Sum_probs=179.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh--hhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP--RIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPH 89 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~--~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (465)
||+|+..+..||+.....|+++|.++||+|++++.+.... ..+..| +++..++. .... . .. ...
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g-----~~~~~i~~---~~~~-~----~~-~~~ 67 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAG-----IEFYFIPV---GGLR-R----KG-SFR 67 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCC-----CceEEEec---cCcC-C----CC-hHH
Confidence 7999999999999988899999999999999998754321 122233 66666651 1110 0 01 111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCc--ccccccccccCCeeEEEecchHHHHHHHhccccccCCcccccC
Q 037721 90 MAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHY--WLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLM 167 (465)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (465)
.+...... ......+.+++++.+||+|++..... .+..+ ++.+++|++.... .
T Consensus 68 ~l~~~~~~-~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~-~~~~~~p~v~~~~-~---------------------- 122 (348)
T TIGR01133 68 LIKTPLKL-LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLA-AKLLGIPLFHHEQ-N---------------------- 122 (348)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHH-HHHcCCCEEEECC-C----------------------
Confidence 11111111 11334677889999999999875322 23345 7788999874211 0
Q ss_pred CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 168 KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
..+. . ...+ ..+.++.++..+ ++.. ..+ ...++|.-
T Consensus 123 ----~~~~-----~----~~~~-------------------~~~~~d~ii~~~-~~~~--------~~~--~~~~i~n~- 158 (348)
T TIGR01133 123 ----AVPG-----L----TNKL-------------------LSRFAKKVLISF-PGAK--------DHF--EAVLVGNP- 158 (348)
T ss_pred ----CCcc-----H----HHHH-------------------HHHHhCeeEECc-hhHh--------hcC--CceEEcCC-
Confidence 0000 0 0000 012344444322 1111 111 12344422
Q ss_pred CCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhh
Q 037721 248 NPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV-DQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGF 326 (465)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~ 326 (465)
....... .+.. .+.+...+++++|.+..|+...... +.+...+..+...+..+++..+... . +.+
T Consensus 159 v~~~~~~-~~~~-~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--------~----~~l 224 (348)
T TIGR01133 159 VRQEIRS-LPVP-RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND--------L----EKV 224 (348)
T ss_pred cCHHHhc-ccch-hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch--------H----HHH
Confidence 1110000 0000 1122222234455444455442111 1122233333334556665554431 1 112
Q ss_pred hhhcCCCce-EEeccc--chHhhhccccceeecccCChhhHHHHHHhCCceeecccc---ccchhhHHHHhhhhcceEEe
Q 037721 327 MDRVKDRGV-VHTGWV--QQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLK---GDQFLNSKLVAGDLKAGVEV 400 (465)
Q Consensus 327 ~~~~~~~nv-~~~~~~--pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~l 400 (465)
.......++ .++.|. +..++|+.+++ +|+++|.++++||+++|+|+|+.|.. .+|..|+..+++. |.|..+
T Consensus 225 ~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~ 301 (348)
T TIGR01133 225 KNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVI 301 (348)
T ss_pred HHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEE
Confidence 211111111 122333 55778999998 99999988999999999999999863 5788899999998 999988
Q ss_pred eecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH
Q 037721 401 NRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLL 445 (465)
Q Consensus 401 ~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~ 445 (465)
+..+ .++++|.+++.++++ |++.++++.+-++...
T Consensus 302 ~~~~----~~~~~l~~~i~~ll~------~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 302 RQKE----LLPEKLLEALLKLLL------DPANLEAMAEAARKLA 336 (348)
T ss_pred eccc----CCHHHHHHHHHHHHc------CHHHHHHHHHHHHhcC
Confidence 7653 679999999999998 7777665555444433
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=2.3e-16 Score=156.15 Aligned_cols=352 Identities=14% Similarity=0.075 Sum_probs=200.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHH
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHM 90 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (465)
.+|+|+..++.||+.|. +|+++|.++|++++|++.... .+++.| ....+++..++ ..++. ..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g-~~~~~~~~~l~---v~G~~-----------~~ 67 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEG-CEVLYSMEELS---VMGLR-----------EV 67 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCc-CccccChHHhh---hccHH-----------HH
Confidence 47999999999999999 999999999999999986643 344444 00012333232 00110 11
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCcEEEE-cCCCccccc--ccccccCCeeEEEecchHHHHHHHhccccccCCcccccC
Q 037721 91 AELLKQALDLMQPQIKTLLSQLKPHFVFF-DFTHYWLPG--LVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLM 167 (465)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~-D~~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (465)
+..+... ......+.+++++.+||+||. |+.++.... . |+.+|||++.+.+.....
T Consensus 68 l~~~~~~-~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~a-a~~~gip~v~~i~P~~wa------------------- 126 (385)
T TIGR00215 68 LGRLGRL-LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELK-KKDPGIKIIYYISPQVWA------------------- 126 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHH-HhhCCCCEEEEeCCcHhh-------------------
Confidence 1111111 123357788899999999885 643323223 6 899999998653210000
Q ss_pred CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 168 KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
+.....+.+. +.+|.+++ +++ .+.. .+.. .+.+..+||.-.
T Consensus 127 -------------w~~~~~r~l~--------------------~~~d~v~~-~~~-~e~~---~~~~-~g~~~~~vGnPv 167 (385)
T TIGR00215 127 -------------WRKWRAKKIE--------------------KATDFLLA-ILP-FEKA---FYQK-KNVPCRFVGHPL 167 (385)
T ss_pred -------------cCcchHHHHH--------------------HHHhHhhc-cCC-CcHH---HHHh-cCCCEEEECCch
Confidence 1111111111 12232222 221 1111 1121 123466677330
Q ss_pred CCCCCCC-cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh---c--CCCeEEEEcCCCCCCCccccccc
Q 037721 248 NPEPPSG-ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEI---T--GLPFFLVLNFPPNVDGQSELVRT 321 (465)
Q Consensus 248 ~~~~~~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~---~--~~~~i~~~~~~~~~~~~~~~~~~ 321 (465)
....... ....+..+-+.-.+++++|.+..||....-......++++++. . +.++++....... ...
T Consensus 168 ~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~-------~~~ 240 (385)
T TIGR00215 168 LDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR-------RLQ 240 (385)
T ss_pred hhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh-------HHH
Confidence 1111100 1122222223333446688888888764322333444444332 2 3445554433211 000
Q ss_pred CChhhhhhcC-CCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeec----cccc---------cchhhH
Q 037721 322 LPPGFMDRVK-DRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLL----PLKG---------DQFLNS 387 (465)
Q Consensus 322 lp~~~~~~~~-~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~----P~~~---------DQ~~na 387 (465)
+ +.+..... ...+.+..+ +..++++.+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|+
T Consensus 241 ~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~ 315 (385)
T TIGR00215 241 F-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLP 315 (385)
T ss_pred H-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeecc
Confidence 0 11111111 123333332 34568888888 9999999888 999999999999 7632 388899
Q ss_pred HHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCC----cchHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 037721 388 KLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNK----EPGASIRANQKWWREFLLNGQIQDKFIADFVK 459 (465)
Q Consensus 388 ~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~----~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 459 (465)
..+.+. ++...+...+ +|++.|.+.+.++|.| . +...++++..+++.+.+.+.|.+.++++.+++
T Consensus 316 nil~~~-~~~pel~q~~----~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 316 NILANR-LLVPELLQEE----CTPHPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHhcCC-ccchhhcCCC----CCHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 999999 9998887664 9999999999999982 3 34457777888888888766667777776654
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.72 E-value=4.7e-16 Score=146.88 Aligned_cols=253 Identities=17% Similarity=0.143 Sum_probs=153.3
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCCCh---hhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 037721 20 AFGHISPFVQLSNKLSLHGVKVSFFSAPGNI---PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQ 96 (465)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~---~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (465)
|.||+.+++.||++|.++||+|+|++..... +.+.+.| +.+..++ +. ..
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g-----~~v~~~~----~~--~~----------------- 64 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAG-----FPVYELP----DE--SS----------------- 64 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcC-----CeEEEec----CC--Cc-----------------
Confidence 8999999999999999999999999987654 3455666 7777776 11 00
Q ss_pred HHHhhHHHHHHHHhhcCCcEEEEcCCCcccc--cccccccCCeeEEEecchHHHHHHHhccccccCCcccccCCCCCCCC
Q 037721 97 ALDLMQPQIKTLLSQLKPHFVFFDFTHYWLP--GLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPDGFP 174 (465)
Q Consensus 97 ~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 174 (465)
...-...+.+++++.+||+||+|.+..... .. .+..+.+++++.-..
T Consensus 65 -~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~-~k~~~~~l~~iDD~~----------------------------- 113 (279)
T TIGR03590 65 -RYDDALELINLLEEEKFDILIVDHYGLDADWEKL-IKEFGRKILVIDDLA----------------------------- 113 (279)
T ss_pred -hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHH-HHHhCCeEEEEecCC-----------------------------
Confidence 001123467788888999999998644332 22 334455555541100
Q ss_pred CCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCC-CCeEeeccCCCCCCCC
Q 037721 175 ATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFK-KPVLLTGPLVNPEPPS 253 (465)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~ 253 (465)
.....+|.++-.+. .-+ ...+.. ..+ ...++.||--.
T Consensus 114 ---------------------------------~~~~~~D~vin~~~-~~~--~~~y~~-~~~~~~~~l~G~~Y~----- 151 (279)
T TIGR03590 114 ---------------------------------DRPHDCDLLLDQNL-GAD--ASDYQG-LVPANCRLLLGPSYA----- 151 (279)
T ss_pred ---------------------------------CCCcCCCEEEeCCC-CcC--HhHhcc-cCcCCCeEEecchHH-----
Confidence 00012333332221 111 111110 011 23556675100
Q ss_pred CcchhhhccccC---CCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh--cCCCeEEEEcCCCCCCCcccccccCChhhhh
Q 037721 254 GELEERWAKWLC---KYPPKSVIYCSFGSETFLTVDQIKELAIGLEI--TGLPFFLVLNFPPNVDGQSELVRTLPPGFMD 328 (465)
Q Consensus 254 ~~~~~~~~~~l~---~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~ 328 (465)
.+.+++.+.-. ..++.+.|+|+||...... ....++++++. .+.++.+++|.... ..+.+..
T Consensus 152 -~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~----------~~~~l~~ 218 (279)
T TIGR03590 152 -LLREEFYQLATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP----------NLDELKK 218 (279)
T ss_pred -hhhHHHHHhhHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc----------CHHHHHH
Confidence 01222211110 1112357999999755433 34456666654 35678888876521 1122222
Q ss_pred hc-CCCceEEecccchH-hhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHH
Q 037721 329 RV-KDRGVVHTGWVQQQ-LILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKL 389 (465)
Q Consensus 329 ~~-~~~nv~~~~~~pq~-~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~ 389 (465)
.. ...|+.+..|++++ ++|+.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 219 ~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 219 FAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 21 23488899999986 79999999 999999 9999999999999999999999999975
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.72 E-value=3e-15 Score=137.83 Aligned_cols=340 Identities=14% Similarity=0.137 Sum_probs=203.2
Q ss_pred CCcEEEEecCC--CccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 037721 9 DQLHVVMFPWF--AFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTS 84 (465)
Q Consensus 9 ~~~~il~~~~~--~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (465)
+++||+|.+.- |.||+.+++.||++|.+. |.+|++++......-..- ..+++++.+|.-.. ..++.....
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~----~~gVd~V~LPsl~k--~~~G~~~~~ 81 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG----PAGVDFVKLPSLIK--GDNGEYGLV 81 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC----cccCceEecCceEe--cCCCceeee
Confidence 35699999885 899999999999999987 999999998865544433 23499999983211 112222222
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchHHHHHHHhccccccCCccc
Q 037721 85 EMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLA 164 (465)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
+.... .....+...+.+.+.++..+||++|+|.+ +.+... +.. |. +.....-+
T Consensus 82 d~~~~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~-P~Glr~--EL~--pt----------L~yl~~~~-------- 134 (400)
T COG4671 82 DLDGD----LEETKKLRSQLILSTAETFKPDIFIVDKF-PFGLRF--ELL--PT----------LEYLKTTG-------- 134 (400)
T ss_pred ecCCC----HHHHHHHHHHHHHHHHHhcCCCEEEEecc-ccchhh--hhh--HH----------HHHHhhcC--------
Confidence 22111 22333335567788889999999999995 444211 000 00 00000000
Q ss_pred ccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHH-HHhhCCCCeEee
Q 037721 165 DLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDF-VRTQFKKPVLLT 243 (465)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~-~~~~~~~~~~~v 243 (465)
+.+. +-.+.+.+.+....+ .++.-......-+..|.+.+...+++-.+.-.+ ........+.++
T Consensus 135 --t~~v----------L~lr~i~D~p~~~~~---~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~yt 199 (400)
T COG4671 135 --TRLV----------LGLRSIRDIPQELEA---DWRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYT 199 (400)
T ss_pred --Ccce----------eehHhhhhchhhhcc---chhhhHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEe
Confidence 0000 000111111100000 000000000011235666666666553211100 011223578999
Q ss_pred ccCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh-cCCC--eEEEEcCCCCCCCcccccc
Q 037721 244 GPLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEI-TGLP--FFLVLNFPPNVDGQSELVR 320 (465)
Q Consensus 244 Gp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~-~~~~--~i~~~~~~~~~~~~~~~~~ 320 (465)
|.+ ...-+..+.+ |... +.+.-|+||-|... ...+.+...++|-.. .+.+ .++++|..
T Consensus 200 G~v-q~~~~~~~~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~----------- 260 (400)
T COG4671 200 GFV-QRSLPHLPLP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF----------- 260 (400)
T ss_pred EEe-eccCcCCCCC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC-----------
Confidence 977 2211101111 1111 33457999988855 566777777766543 4444 66666653
Q ss_pred cCChhhhh----h-cCCCceEEecccch-HhhhccccceeecccCChhhHHHHHHhCCceeecccc---ccchhhHHHHh
Q 037721 321 TLPPGFMD----R-VKDRGVVHTGWVQQ-QLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLK---GDQFLNSKLVA 391 (465)
Q Consensus 321 ~lp~~~~~----~-~~~~nv~~~~~~pq-~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~---~DQ~~na~~v~ 391 (465)
+|..-.+ . .+.+++.+..|-.+ ..++.-++. +|+-||+||++|-+.+|+|.|++|.. -||-.-|+|++
T Consensus 261 -MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~ 337 (400)
T COG4671 261 -MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLE 337 (400)
T ss_pred -CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHH
Confidence 5543332 2 23578999999765 568888888 99999999999999999999999984 39999999999
Q ss_pred hhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 392 GDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 392 ~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
++ |+.=++-.. .++++.+.++|...++
T Consensus 338 ~L-GL~dvL~pe----~lt~~~La~al~~~l~ 364 (400)
T COG4671 338 EL-GLVDVLLPE----NLTPQNLADALKAALA 364 (400)
T ss_pred hc-CcceeeCcc----cCChHHHHHHHHhccc
Confidence 98 998888776 4999999999999887
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=3.9e-15 Score=147.94 Aligned_cols=164 Identities=19% Similarity=0.248 Sum_probs=110.2
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHh-cCCCeEEEEcCCCCCCCcccccccCChhhhhhc--CCCceEEecccchH
Q 037721 268 PPKSVIYCSFGSETFLTVDQIKELAIGLEI-TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV--KDRGVVHTGWVQQQ 344 (465)
Q Consensus 268 ~~~~~v~vs~GS~~~~~~~~~~~i~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq~ 344 (465)
+++++|++..|+.... ..+..+++++.. .+.+++++++.+.. .. +.+.... ...|+.+.+|+++.
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------~~----~~l~~~~~~~~~~v~~~g~~~~~ 267 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------LK----QSLEDLQETNPDALKVFGYVENI 267 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------HH----HHHHHHHhcCCCcEEEEechhhH
Confidence 3455787877876532 234556666654 35677777664310 00 1111111 12479999999874
Q ss_pred -hhhccccceeecccCChhhHHHHHHhCCceeec-cccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 345 -LILRHESVGCYVCHSGFSSVTEAVISDCQLVLL-PLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 345 -~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
+++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. .+.+++.++|.+++
T Consensus 268 ~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~--------~~~~~l~~~i~~ll 336 (380)
T PRK13609 268 DELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI--------RDDEEVFAKTEALL 336 (380)
T ss_pred HHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE--------CCHHHHHHHHHHHH
Confidence 79999998 99999988999999999999985 6677788999999988 998753 26789999999999
Q ss_pred cccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 037721 423 VDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKD 460 (465)
Q Consensus 423 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 460 (465)
+ |++.++++.+-+..+.+..+.++.++.+++.
T Consensus 337 ~------~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~ 368 (380)
T PRK13609 337 Q------DDMKLLQMKEAMKSLYLPEPADHIVDDILAE 368 (380)
T ss_pred C------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 8 6666655544444444333444445555443
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=1.2e-13 Score=137.33 Aligned_cols=166 Identities=13% Similarity=0.167 Sum_probs=110.3
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHH-Hh-cCCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccchH
Q 037721 268 PPKSVIYCSFGSETFLTVDQIKELAIGL-EI-TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQQQ 344 (465)
Q Consensus 268 ~~~~~v~vs~GS~~~~~~~~~~~i~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~ 344 (465)
+++++|+++.|+.+.. ..+..+++++ +. .+.++++++|.+.. .. +.+.+.. ...++.+.+|+++.
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~~------l~----~~l~~~~~~~~~v~~~G~~~~~ 267 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSKE------LK----RSLTAKFKSNENVLILGYTKHM 267 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCHH------HH----HHHHHHhccCCCeEEEeccchH
Confidence 3466888888987621 2344444443 22 34677777665310 00 1111111 23478888999764
Q ss_pred -hhhccccceeecccCChhhHHHHHHhCCceeec-cccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 345 -LILRHESVGCYVCHSGFSSVTEAVISDCQLVLL-PLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 345 -~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
++++.+|+ +|+..|..|+.||+++|+|+|+. |.-++|..|+..+++. |+|+... +.+++.++|.+++
T Consensus 268 ~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~--------~~~~l~~~i~~ll 336 (391)
T PRK13608 268 NEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD--------TPEEAIKIVASLT 336 (391)
T ss_pred HHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC--------CHHHHHHHHHHHh
Confidence 68999999 99998889999999999999998 7767788999999999 9997632 6888999999999
Q ss_pred cccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 423 VDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 423 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
+ |++.++++.+-+....+..+....++.+++.+.
T Consensus 337 ~------~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 337 N------GNEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred c------CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 8 555444444333333333444545555554443
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.57 E-value=2.1e-13 Score=135.49 Aligned_cols=346 Identities=15% Similarity=0.093 Sum_probs=174.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHH
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHM 90 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (465)
++|+|+..++.||+.|.. ++++|.++++++.+++.... .++..+ ....+.++.++ .. .. ...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~--------~~-----g~-~~~ 63 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG-CESLFDMEELA--------VM-----GL-VEV 63 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC-CccccCHHHhh--------hc-----cH-HHH
Confidence 479999999999999999 99999998888887775432 233332 00112222221 10 00 111
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCcEEEE-cCCCccc--ccccccccCCeeEEEecchHHHHHHHhccccccCCcccccC
Q 037721 91 AELLKQALDLMQPQIKTLLSQLKPHFVFF-DFTHYWL--PGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLM 167 (465)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~-D~~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (465)
...+.. .......+.+++++++||+|++ ++.+.+. ... |...|||++.+......
T Consensus 64 ~~~~~~-~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~-a~~~~ip~i~~~~~~~~-------------------- 121 (380)
T PRK00025 64 LPRLPR-LLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKK-LRKAGIPTIHYVSPSVW-------------------- 121 (380)
T ss_pred HHHHHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHH-HHHCCCCEEEEeCCchh--------------------
Confidence 111111 1124467788899999999876 4322333 234 66789998764221000
Q ss_pred CCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccCC
Q 037721 168 KSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPLV 247 (465)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 247 (465)
.+.++ ....+ .+.++.++..+-. + .+.+.. .+-.+.++|...
T Consensus 122 ---~~~~~---------~~~~~--------------------~~~~d~i~~~~~~--~---~~~~~~-~g~~~~~~G~p~ 163 (380)
T PRK00025 122 ---AWRQG---------RAFKI--------------------AKATDHVLALFPF--E---AAFYDK-LGVPVTFVGHPL 163 (380)
T ss_pred ---hcCch---------HHHHH--------------------HHHHhhheeCCcc--C---HHHHHh-cCCCeEEECcCH
Confidence 00010 00000 1223333333211 1 111221 122366777320
Q ss_pred CCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH---h--cCCCeEEEEcCCCCCCCcccccccC
Q 037721 248 NPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLE---I--TGLPFFLVLNFPPNVDGQSELVRTL 322 (465)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~---~--~~~~~i~~~~~~~~~~~~~~~~~~l 322 (465)
...........++.+.+.-.+++++|++..||...........++++++ . .+.++++..+.+.. .
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~-------~--- 233 (380)
T PRK00025 164 ADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR-------R--- 233 (380)
T ss_pred HHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh-------H---
Confidence 1110000111222222332233456677677654321222333444433 2 23456666542211 0
Q ss_pred ChhhhhhcC---CCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccc--------cchhh-----
Q 037721 323 PPGFMDRVK---DRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKG--------DQFLN----- 386 (465)
Q Consensus 323 p~~~~~~~~---~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~--------DQ~~n----- 386 (465)
+.+.+... +-++.+.. -.-..+++.+++ +|+.+|.+++ ||+++|+|+|+.|-.. .|..|
T Consensus 234 -~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l 308 (380)
T PRK00025 234 -EQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSL 308 (380)
T ss_pred -HHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeeh
Confidence 11111111 11333322 123568888888 9999998887 9999999999885321 22222
Q ss_pred HHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHH----HHHHHHHHHHHcCCchHHHHHHHHHHH
Q 037721 387 SKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIR----ANQKWWREFLLNGQIQDKFIADFVKDL 461 (465)
Q Consensus 387 a~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~----~~a~~l~~~~~~~~~~~~~~~~~~~~l 461 (465)
+..+.+. +++..+... ..+++++.+++.++++ |++.+ ++++++.+.+ ..+.+.+.++.+.+.+
T Consensus 309 ~~~~~~~-~~~~~~~~~----~~~~~~l~~~i~~ll~------~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 309 PNLLAGR-ELVPELLQE----EATPEKLARALLPLLA------DGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHhcCC-CcchhhcCC----CCCHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 2333433 434334333 3789999999999999 65544 4555555555 4455566666665544
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=5e-16 Score=135.64 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=97.9
Q ss_pred EEEEEeCCcccCCH-HHHHHHHHHHHh--cCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccc-hHhhh
Q 037721 272 VIYCSFGSETFLTV-DQIKELAIGLEI--TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQ-QQLIL 347 (465)
Q Consensus 272 ~v~vs~GS~~~~~~-~~~~~i~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q~~vL 347 (465)
+|+|+.||.....- +.+..++..+.. ..+++++.+|..... .... .+.. ...++.+.+|.+ ..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~-------~~~~-~~~~--~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE-------ELKI-KVEN--FNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH-------HHCC-CHCC--TTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH-------HHHH-HHhc--cCCcEEEEechhhHHHHH
Confidence 58999998764321 223334444333 358899998876211 1111 1110 115899999999 78899
Q ss_pred ccccceeecccCChhhHHHHHHhCCceeeccccc----cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKG----DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+...+ .+.+.|.++|.+++.
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~----~~~~~L~~~i~~l~~ 143 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESE----LNPEELAEAIEELLS 143 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-----SCCCHHHHHHCHCC
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCccc----CCHHHHHHHHHHHHc
Confidence 99999 999999999999999999999999988 999999999999 9999998764 779999999999998
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.53 E-value=2.2e-12 Score=128.07 Aligned_cols=171 Identities=13% Similarity=0.038 Sum_probs=110.4
Q ss_pred cCCCCCCeEEEEEeCCcccCCHHHH-HHHHHHHH-----hcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEE
Q 037721 264 LCKYPPKSVIYCSFGSETFLTVDQI-KELAIGLE-----ITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVH 337 (465)
Q Consensus 264 l~~~~~~~~v~vs~GS~~~~~~~~~-~~i~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 337 (465)
+.-.+++++|++..|+........+ ..+...+. ..+.++++.+|.+.. ... .+.......++.+
T Consensus 200 ~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~------~~~----~L~~~~~~~~v~~ 269 (382)
T PLN02605 200 LGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK------LQS----KLESRDWKIPVKV 269 (382)
T ss_pred cCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH------HHH----HHHhhcccCCeEE
Confidence 3333446678777777654443333 22222221 234566777775411 011 1111111236888
Q ss_pred ecccch-HhhhccccceeecccCChhhHHHHHHhCCceeeccccccch-hhHHHHhhhhcceEEeeecCCCCccCHHHHH
Q 037721 338 TGWVQQ-QLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQF-LNSKLVAGDLKAGVEVNRRDHDGHFGKEDIF 415 (465)
Q Consensus 338 ~~~~pq-~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~ 415 (465)
.+|+++ .+++..+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+. |.|+.+ . +++++.
T Consensus 270 ~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~--~------~~~~la 338 (382)
T PLN02605 270 RGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS--E------SPKEIA 338 (382)
T ss_pred EeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec--C------CHHHHH
Confidence 899985 568888998 999999999999999999999998766665 799999998 999754 2 789999
Q ss_pred HHHHHhhcccCCcch-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 037721 416 KAVKTVMVDVNKEPG-ASIRANQKWWREFLLNGQIQDKFIADFVKDL 461 (465)
Q Consensus 416 ~ai~~ll~~~~~~~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l 461 (465)
++|.+++. + ++.++++.+-+.......++.+.++.+.+.+
T Consensus 339 ~~i~~ll~------~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 339 RIVAEWFG------DKSDELEAMSENALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHc------CCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 99999998 5 6655555555444443444444455555443
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=5.5e-10 Score=109.52 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=100.9
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHh---
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEIT-GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQL--- 345 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~--- 345 (465)
+.+++..|+... .+.+.+..++..+... ++.+++. |.+...+ .+. ....|+.+.+|+++.+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~~~~-----------~~~--~~~~~v~~~g~~~~~~~~~ 262 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGPARA-----------RLE--ARYPNVHFLGFLDGEELAA 262 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCchHH-----------HHh--ccCCcEEEEeccCHHHHHH
Confidence 356677777653 3446666666655432 3444444 4321110 011 1235899999998765
Q ss_pred hhccccceeecccCC----hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 346 ILRHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 346 vL~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
++..+++ +|+.+. .++++||+++|+|+|+.+.. .+...+++. +.|...+. .+.+++.++|.++
T Consensus 263 ~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~------~~~~~l~~~i~~l 329 (364)
T cd03814 263 AYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP------GDAEAFAAALAAL 329 (364)
T ss_pred HHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC------CCHHHHHHHHHHH
Confidence 6888888 876654 47899999999999997754 356667777 88988775 3788899999999
Q ss_pred hcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 037721 422 MVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDL 461 (465)
Q Consensus 422 l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l 461 (465)
+. +++.++++.+-+....+.-+.+..++.+++.+
T Consensus 330 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 330 LA------DPELRRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred Hc------CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 98 66665555544444433334455556665543
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.36 E-value=2.1e-10 Score=113.84 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=104.7
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHh----cCCCeEEEEcCCCCCCCcccccccCCh-hhhh---------hcCCCc
Q 037721 269 PKSVIYCSFGSETFLTVDQIKELAIGLEI----TGLPFFLVLNFPPNVDGQSELVRTLPP-GFMD---------RVKDRG 334 (465)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~i~~al~~----~~~~~i~~~~~~~~~~~~~~~~~~lp~-~~~~---------~~~~~n 334 (465)
++++|.+--||...-....+..++++++. .+..|++.+.+..+.+. ....+.+ ++.. .....+
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~ 280 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEK---LQAILEDLGWQLEGSSEDQTSLFQKGT 280 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHH---HHHHHHhcCceecCCccccchhhccCc
Confidence 34578888888754333334445555443 36778888744322110 0000000 1100 001123
Q ss_pred eEEeccc-chHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhh---hcceEEeeecCCCCccC
Q 037721 335 VVHTGWV-QQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGD---LKAGVEVNRRDHDGHFG 410 (465)
Q Consensus 335 v~~~~~~-pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~~ 410 (465)
+.+..+. +..++++.+++ +||-+|..| .|+.+.|+|+|++|.-..|. |+...++. .|.++.+.. .+
T Consensus 281 ~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~------~~ 350 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS------KN 350 (396)
T ss_pred eEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC------CC
Confidence 4454444 34678999999 999999766 99999999999999877786 98876652 266666654 35
Q ss_pred HHHHHHHHHHhhcccCCcchHHHHHHHH-HHHHHHHcCCchHHHHHHHHH
Q 037721 411 KEDIFKAVKTVMVDVNKEPGASIRANQK-WWREFLLNGQIQDKFIADFVK 459 (465)
Q Consensus 411 ~~~l~~ai~~ll~~~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~~~ 459 (465)
.+.|.+++.++++ |++.++++. +.++.+.+.+.+.+.++.+.+
T Consensus 351 ~~~l~~~l~~ll~------d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 351 PEQAAQVVRQLLA------DPELLERCRRNGQERMGPPGASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHHHc------CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6999999999998 776665555 444455444444444544443
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.31 E-value=2.2e-12 Score=108.93 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=78.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch--HH
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP--HM 90 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~ 90 (465)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++.| ++|.+++. . ..... ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~G-----l~~~~~~~----~--------~~~~~~~~~ 63 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAG-----LEFVPIPG----D--------SRLPRSLEP 63 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT------EEEESSS----C--------GGGGHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccC-----ceEEEecC----C--------cCcCcccch
Confidence 789999999999999999999999999999999999999999998 99999971 1 00111 01
Q ss_pred HHHHHHH------HHhhHHHHHHHHhh--------cCCcEEEEcCCCcccccccccccCCeeEEEecchHH
Q 037721 91 AELLKQA------LDLMQPQIKTLLSQ--------LKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSAI 147 (465)
Q Consensus 91 ~~~~~~~------~~~~~~~l~~~l~~--------~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~~ 147 (465)
....... .....+.+.+...+ ..+|+++.+.....+..+ |+.+|||++.....+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v-aE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 64 LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALV-AEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHH-HHHHTS-EEEEESSGGG
T ss_pred hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCcccee-EhhhCchHHHHhhCCcC
Confidence 1111111 11111222222111 256788888866667788 99999999987665543
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.26 E-value=7.9e-09 Score=100.96 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=82.8
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHh---
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQL--- 345 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~--- 345 (465)
.+.+++..|+... .+.+.+..++..+...++++++. |...... . ..... ....++.+.+|+++.+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~-------~--~~~~~-~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIV-GNGLELE-------E--ESYEL-EGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEE-cCchhhh-------H--HHHhh-cCCCeEEEeCCCCHHHHHH
Confidence 3466677787653 33455555555444435555444 4332110 0 00000 1335899999997654
Q ss_pred hhccccceeecc----cCCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHH
Q 037721 346 ILRHESVGCYVC----HSGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKT 420 (465)
Q Consensus 346 vL~~~~~~~~It----HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ 420 (465)
++..+++ +|+ ..|+ .++.||+++|+|+|+.+. ..+...+.+. +.|..++.. +.+++.+++.+
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~------d~~~l~~~i~~ 325 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPPG------DAEDLAAALER 325 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECCC------CHHHHHHHHHH
Confidence 5778888 663 2333 589999999999999654 4566677766 688887764 68999999999
Q ss_pred hhc
Q 037721 421 VMV 423 (465)
Q Consensus 421 ll~ 423 (465)
+++
T Consensus 326 l~~ 328 (359)
T cd03823 326 LID 328 (359)
T ss_pred HHh
Confidence 998
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.26 E-value=1.1e-08 Score=104.47 Aligned_cols=125 Identities=17% Similarity=0.118 Sum_probs=80.2
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHh---hh
Q 037721 272 VIYCSFGSETFLTVDQIKELAIGLEIT-GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQL---IL 347 (465)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~---vL 347 (465)
.+++..|+... ...+..++++++.. +.++++ +|.+.. . +.+.......++.+.+|+++.+ ++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~G~~-------~----~~l~~~~~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGDGPY-------R----EELEKMFAGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeCChH-------H----HHHHHHhccCCeEEeccCCHHHHHHHH
Confidence 44556677643 22344456666554 455554 443311 1 1232223345889999998654 77
Q ss_pred ccccceeecccCC----hhhHHHHHHhCCceeeccccccchhhHHHHhh---hhcceEEeeecCCCCccCHHHHHHHHHH
Q 037721 348 RHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAG---DLKAGVEVNRRDHDGHFGKEDIFKAVKT 420 (465)
Q Consensus 348 ~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~---~~G~G~~l~~~~~~~~~~~~~l~~ai~~ 420 (465)
..+++ ||.-.. ..+++||+++|+|+|+.... .....+++ . +.|..++.. +.+++.++|.+
T Consensus 330 ~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~------d~~~la~~i~~ 396 (465)
T PLN02871 330 ASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG------DVDDCVEKLET 396 (465)
T ss_pred HHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC------CHHHHHHHHHH
Confidence 77888 774332 35799999999999986543 33445555 6 788888764 78999999999
Q ss_pred hhc
Q 037721 421 VMV 423 (465)
Q Consensus 421 ll~ 423 (465)
+++
T Consensus 397 ll~ 399 (465)
T PLN02871 397 LLA 399 (465)
T ss_pred HHh
Confidence 998
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=3.7e-10 Score=101.47 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=108.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccc-hHhhh
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQ-QQLIL 347 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~p-q~~vL 347 (465)
+.-|+|++|... +.....+++..++..++.+-++++... ..+ .+...+. ..+|+.+..... ...++
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~---------p~l-~~l~k~~~~~~~i~~~~~~~dma~LM 225 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN---------PTL-KNLRKRAEKYPNINLYIDTNDMAELM 225 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC---------cch-hHHHHHHhhCCCeeeEecchhHHHHH
Confidence 446999998733 334566688888877777767776431 112 2333332 345666655555 45699
Q ss_pred ccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCC
Q 037721 348 RHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNK 427 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~ 427 (465)
..+++ .|+-||. |+.|++.-|+|.+++|+.-.|--.|+..+.. |+-..+... ++.+.+..-+.++..
T Consensus 226 ke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~-----l~~~~~~~~~~~i~~---- 292 (318)
T COG3980 226 KEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYH-----LKDLAKDYEILQIQK---- 292 (318)
T ss_pred Hhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCC-----CchHHHHHHHHHhhh----
Confidence 99999 9998876 8999999999999999999999999999998 998888763 788888888889998
Q ss_pred cchHHHHHHHHHHHHHH
Q 037721 428 EPGASIRANQKWWREFL 444 (465)
Q Consensus 428 ~~~~~~~~~a~~l~~~~ 444 (465)
|...|++.-.-++.+
T Consensus 293 --d~~~rk~l~~~~~~i 307 (318)
T COG3980 293 --DYARRKNLSFGSKLI 307 (318)
T ss_pred --CHHHhhhhhhcccee
Confidence 777777665544444
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.17 E-value=1.7e-08 Score=99.55 Aligned_cols=141 Identities=17% Similarity=0.115 Sum_probs=85.8
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHh--
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEIT-GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQL-- 345 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~-- 345 (465)
++.+++..|+... .+.+.+...+..+... ++++++ +|.+.. ...+ ..+.......|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~-------~~~~-~~~~~~~~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGPE-------KEEL-KELAKALGLDNVTFLGRVPKEELP 289 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCccc-------HHHH-HHHHHHcCCCcEEEeCCCChHHHH
Confidence 4467777887654 3445566655555443 455444 343311 0011 0111122345899999998654
Q ss_pred -hhccccceeecccCC---------hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHH
Q 037721 346 -ILRHESVGCYVCHSG---------FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIF 415 (465)
Q Consensus 346 -vL~~~~~~~~ItHgG---------~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~ 415 (465)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+.+. +.|..++.. +.+++.
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~~------~~~~l~ 356 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPPG------DPEALA 356 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCCC------CHHHHH
Confidence 6777887 654322 234799999999999987655433 34444 677776653 789999
Q ss_pred HHHHHhhcccCCcchHHHHHHHH
Q 037721 416 KAVKTVMVDVNKEPGASIRANQK 438 (465)
Q Consensus 416 ~ai~~ll~~~~~~~~~~~~~~a~ 438 (465)
++|.+++. +++.+++..
T Consensus 357 ~~i~~~~~------~~~~~~~~~ 373 (394)
T cd03794 357 AAILELLD------DPEERAEMG 373 (394)
T ss_pred HHHHHHHh------ChHHHHHHH
Confidence 99999997 555544433
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.15 E-value=3.4e-08 Score=96.07 Aligned_cols=313 Identities=15% Similarity=0.096 Sum_probs=162.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh-hhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR-IKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHM 90 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~-i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (465)
||++++....|+...+..++++|.++||+|++++....... ....+ +++..++... .. . ....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~----~-~~~~- 64 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALG-----VKVIPIPLDR-----RG----I-NPFK- 64 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCC-----ceEEeccccc-----cc----c-ChHh-
Confidence 47777777889999999999999999999999998765542 33333 6666665110 00 0 0000
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCccc--ccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCC
Q 037721 91 AELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWL--PGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMK 168 (465)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (465)
.+. ....+.+.+++.+||+|++....... ... ++..+.|.+..........
T Consensus 65 --~~~-----~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~------------------- 117 (359)
T cd03808 65 --DLK-----ALLRLYRLLRKERPDIVHTHTPKPGILGRLA-ARLAGVPKVIYTVHGLGFV------------------- 117 (359)
T ss_pred --HHH-----HHHHHHHHHHhcCCCEEEEccccchhHHHHH-HHHcCCCCEEEEecCcchh-------------------
Confidence 011 12345677788899999887543322 233 4435555554432111100
Q ss_pred CCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCC---CCeEeecc
Q 037721 169 SPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFK---KPVLLTGP 245 (465)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~~~vGp 245 (465)
. . .. ....... ..+.+ .....++.++..|-...+ .+..... .....+.|
T Consensus 118 ---~-~------~~-~~~~~~~----------~~~~~--~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~ 169 (359)
T cd03808 118 ---F-T------SG-GLKRRLY----------LLLER--LALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPG 169 (359)
T ss_pred ---h-c------cc-hhHHHHH----------HHHHH--HHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecC
Confidence 0 0 00 0000000 00000 112345666665532221 2222111 12222222
Q ss_pred CCCCCCCCCcchhhhccccCC-CCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCccccccc
Q 037721 246 LVNPEPPSGELEERWAKWLCK-YPPKSVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRT 321 (465)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~ 321 (465)
...... .. ..... ..+++.+++..|+... .+.+.+.+.+..+... ++++++. |....... ...
T Consensus 170 ~~~~~~-------~~-~~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~~~~----~~~ 236 (359)
T cd03808 170 SGVDLD-------RF-SPSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDEENP----AAI 236 (359)
T ss_pred CCCChh-------hc-CccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCcchh----hHH
Confidence 201110 00 00000 1234467778887653 3445566666555532 3444444 33321110 000
Q ss_pred CChhhhhhcCCCceEEecccch-HhhhccccceeecccCC----hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcc
Q 037721 322 LPPGFMDRVKDRGVVHTGWVQQ-QLILRHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKA 396 (465)
Q Consensus 322 lp~~~~~~~~~~nv~~~~~~pq-~~vL~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 396 (465)
. .........++.+.++..+ .+++..+++ +|.-+. .++++||+++|+|+|+-+.. .....+++. +.
T Consensus 237 ~--~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~ 307 (359)
T cd03808 237 L--EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VN 307 (359)
T ss_pred H--HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cc
Confidence 0 0111112357877777543 468888888 665432 57899999999999996543 345566666 78
Q ss_pred eEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 397 GVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 397 G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
|..++. -+.+++.++|.+++.
T Consensus 308 g~~~~~------~~~~~~~~~i~~l~~ 328 (359)
T cd03808 308 GFLVPP------GDAEALADAIERLIE 328 (359)
T ss_pred eEEECC------CCHHHHHHHHHHHHh
Confidence 877765 378999999999998
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.14 E-value=2.2e-08 Score=98.28 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHh--cCCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccchHh-
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEI--TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQQQL- 345 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~~- 345 (465)
+.+++..|+... .+.+.+..++..+.. .++++++.-++. . ...+ ....+.. ...++.+.+++|+.+
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~-~-------~~~~-~~~~~~~~~~~~v~~~g~~~~~~~ 272 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP-E-------REEL-EELARELGLADRVIFTGFVPREEL 272 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc-h-------HHHH-HHHHHHcCCCCcEEEeccCChHHH
Confidence 356667777653 344555555555543 344444443221 1 1111 0111111 235899999998764
Q ss_pred --hhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHH
Q 037721 346 --ILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVK 419 (465)
Q Consensus 346 --vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~ 419 (465)
++..+++ +|.. +...++.||+++|+|+|+.. ....+..+++. +.|..++.. +. ++.+++.
T Consensus 273 ~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~~------~~-~~~~~i~ 338 (374)
T cd03817 273 PDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPPG------DE-ALAEALL 338 (374)
T ss_pred HHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCCC------CH-HHHHHHH
Confidence 6778888 6533 33478999999999999865 44566777776 788888764 22 9999999
Q ss_pred Hhhc
Q 037721 420 TVMV 423 (465)
Q Consensus 420 ~ll~ 423 (465)
++++
T Consensus 339 ~l~~ 342 (374)
T cd03817 339 RLLQ 342 (374)
T ss_pred HHHh
Confidence 9998
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.12 E-value=7.9e-08 Score=94.97 Aligned_cols=163 Identities=9% Similarity=0.041 Sum_probs=93.2
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHh-cCCCeEEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEecccch-Hhhh
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEI-TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQQ-QLIL 347 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq-~~vL 347 (465)
.+++.+|.... .+.+.+.+.+..+.. .+.++++. |.+.+. ..+ .....+.+ ..++.+.++.++ .+++
T Consensus 198 ~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~-G~g~~~-------~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~ 268 (371)
T cd04962 198 KVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLV-GDGPER-------SPA-ERLARELGLQDDVLFLGKQDHVEELL 268 (371)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHhcCCceEEEE-cCCcCH-------HHH-HHHHHHcCCCceEEEecCcccHHHHH
Confidence 55666776653 334444444444433 34555444 333211 011 01111111 246888888765 4578
Q ss_pred ccccceeecc----cCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVC----HSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~It----HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|. -|...++.||+++|+|+|+.. ....+..+++. ..|..++. -+.+++.+++.++++
T Consensus 269 ~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~------~~~~~l~~~i~~l~~ 335 (371)
T cd04962 269 SIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV------GDVEAMAEYALSLLE 335 (371)
T ss_pred HhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC------CCHHHHHHHHHHHHh
Confidence 88888 652 233469999999999999954 34566667665 67876665 378999999999998
Q ss_pred ccCCcchHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Q 037721 424 DVNKEPGASIRANQKWWREFL-LNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 424 ~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~l~ 462 (465)
+++.++++.+-+... .+.-+.+..++.+.+.++
T Consensus 336 ------~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 336 ------DDELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred ------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555444333322222 323244445566555544
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.11 E-value=9.7e-08 Score=95.47 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCceEEecccchHh---hhccccceeeccc-CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCC
Q 037721 332 DRGVVHTGWVQQQL---ILRHESVGCYVCH-SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHD 406 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~~~~~ItH-gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (465)
..++.+.+++|+.+ ++..+++-++.+. .|. .+++||+++|+|+|+. |.......+.+. ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC----
Confidence 35899999999765 5667787222222 232 4899999999999985 444556666665 67877765
Q ss_pred CccCHHHHHHHHHHhhc
Q 037721 407 GHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 407 ~~~~~~~l~~ai~~ll~ 423 (465)
.+++++.++|.++++
T Consensus 351 --~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 --FDPDALAAAVIELLD 365 (396)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 379999999999998
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.10 E-value=7.4e-08 Score=93.87 Aligned_cols=342 Identities=13% Similarity=0.018 Sum_probs=173.8
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 037721 21 FGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDL 100 (465)
Q Consensus 21 ~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (465)
.|+...+..+++.|.+.||+|++++............ ...... .. .. . ... ........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-----~~~~~~-----~~--~~---~-~~~-----~~~~~~~~ 72 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-----GGIVVV-----RP--PP---L-LRV-----RRLLLLLL 72 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-----cCccee-----cC--Cc---c-ccc-----chhHHHHH
Confidence 7899999999999999999999999876543322110 000000 00 00 0 000 00011111
Q ss_pred hHHHHHHHHhhcCCcEEEEcCCCcccc--cccccccCCeeEEEecchHHHHHHHhccccccCCcccccCCCCCCCCCCcc
Q 037721 101 MQPQIKTLLSQLKPHFVFFDFTHYWLP--GLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPDGFPATSI 178 (465)
Q Consensus 101 ~~~~l~~~l~~~~pD~vi~D~~~~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 178 (465)
....+...++..++|+|+......... .. +...++|++.......... ..
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~-~~~~~~~~i~~~h~~~~~~-----------------------~~---- 124 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALLAAALA-ARLLGIPLVLTVHGLEFGR-----------------------PG---- 124 (374)
T ss_pred HHHHHHHHhhhcCCcEEEEechhHHHHHHHH-HHhcCCcEEEEeccchhhc-----------------------cc----
Confidence 234566777788999999877544433 35 7888999887644322110 00
Q ss_pred CCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCC---CCeEeeccCCCCCCCCCc
Q 037721 179 TSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFK---KPVLLTGPLVNPEPPSGE 255 (465)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~~~vGp~~~~~~~~~~ 255 (465)
.......... ..........++.++..+.... +.+....+ .++..+..- .....-..
T Consensus 125 --~~~~~~~~~~------------~~~~~~~~~~~d~~i~~s~~~~-----~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 184 (374)
T cd03801 125 --NELGLLLKLA------------RALERRALRRADRIIAVSEATR-----EELRELGGVPPEKITVIPNG-VDTERFRP 184 (374)
T ss_pred --cchhHHHHHH------------HHHHHHHHHhCCEEEEecHHHH-----HHHHhcCCCCCCcEEEecCc-ccccccCc
Confidence 0000000000 0011112345666666553222 22222222 245555433 21110000
Q ss_pred chhhhccccCCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhh-hhcC
Q 037721 256 LEERWAKWLCKYPPKSVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFM-DRVK 331 (465)
Q Consensus 256 ~~~~~~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~-~~~~ 331 (465)
........... ..+..+++.+|+... .+.+.+...+..+... ++++++. |.+.. ...+ .... +...
T Consensus 185 ~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~-G~~~~-------~~~~-~~~~~~~~~ 254 (374)
T cd03801 185 APRAARRRLGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIV-GDGPL-------REEL-EALAAELGL 254 (374)
T ss_pred cchHHHhhcCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEE-eCcHH-------HHHH-HHHHHHhCC
Confidence 00001111111 223356677777653 2334444444444433 3344333 32210 0000 0010 1113
Q ss_pred CCceEEecccchH---hhhccccceeecc----cCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecC
Q 037721 332 DRGVVHTGWVQQQ---LILRHESVGCYVC----HSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRD 404 (465)
Q Consensus 332 ~~nv~~~~~~pq~---~vL~~~~~~~~It----HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (465)
..++.+.+++++. +++..+++ +|+ -|..++++||+++|+|+|+.+. ......+++. +.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC--
Confidence 4588999999754 46777887 663 3456799999999999999665 4566667666 78877775
Q ss_pred CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH-HHHcCCchHHHHHHHHHH
Q 037721 405 HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWRE-FLLNGQIQDKFIADFVKD 460 (465)
Q Consensus 405 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~ 460 (465)
.+.+++.++|.+++. +++.++.+.+-+. .+.+.-+.++..+.+++.
T Consensus 326 ----~~~~~l~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03801 326 ----GDPEALAEAILRLLD------DPELRRRLGEAARERVAERFSWDRVAARTEEV 372 (374)
T ss_pred ----CCHHHHHHHHHHHHc------ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 369999999999998 5554443333322 344333444455555543
No 55
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.10 E-value=3.3e-08 Score=98.60 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=82.9
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCC--hhhhhhc-CCCceEEecccchHh
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLP--PGFMDRV-KDRGVVHTGWVQQQL 345 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp--~~~~~~~-~~~nv~~~~~~pq~~ 345 (465)
.+++..|+... .+.+.+...+..+... +.++++.-+...... ..... ..+.+.. ...++.+.+|+|+.+
T Consensus 221 ~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 295 (398)
T cd03800 221 PRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDIL-----AMDEEELRELARELGVIDRVDFPGRVSRED 295 (398)
T ss_pred cEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch-----hhhhHHHHHHHHhcCCCceEEEeccCCHHH
Confidence 56677787653 3344444444444432 455555544331110 00000 0011111 135899999999765
Q ss_pred ---hhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 346 ---ILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 346 ---vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
++..+++ +++. |-..+++||+++|+|+|+-.. ......+++. +.|..++. .+.+++.++|
T Consensus 296 ~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~~------~~~~~l~~~i 362 (398)
T cd03800 296 LPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVDP------RDPEALAAAL 362 (398)
T ss_pred HHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeCC------CCHHHHHHHH
Confidence 4778888 7643 223689999999999998654 3456667776 78988775 3799999999
Q ss_pred HHhhc
Q 037721 419 KTVMV 423 (465)
Q Consensus 419 ~~ll~ 423 (465)
.++++
T Consensus 363 ~~l~~ 367 (398)
T cd03800 363 RRLLT 367 (398)
T ss_pred HHHHh
Confidence 99998
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.04 E-value=1.3e-07 Score=91.46 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=84.2
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccc-hHhh
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQ-QQLI 346 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~p-q~~v 346 (465)
.+++.+|+... .+.+.+..++..+... +.++++. +.+.. ...+. ...... ...++.+.++.. -..+
T Consensus 179 ~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~-G~~~~-------~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~ 249 (348)
T cd03820 179 KRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIV-GDGPE-------REALE-ALIKELGLEDRVILLGFTKNIEEY 249 (348)
T ss_pred cEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEE-eCCCC-------HHHHH-HHHHHcCCCCeEEEcCCcchHHHH
Confidence 55666676553 3445566666555432 3344443 33211 11110 111111 234677777733 3568
Q ss_pred hccccceeecccCC----hhhHHHHHHhCCceeeccccccchhhHHHHhhhhc-ceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 347 LRHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLK-AGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 347 L~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
+..+++ +|.-.. .++++||+++|+|+|+.+..+.+ ..+... | .|..++. .+.+++.++|.++
T Consensus 250 ~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~------~~~~~~~~~i~~l 316 (348)
T cd03820 250 YAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN------GDVEALAEALLRL 316 (348)
T ss_pred HHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC------CCHHHHHHHHHHH
Confidence 888888 665442 46899999999999986654433 233444 5 7877765 3789999999999
Q ss_pred hcccCCcchHHHHHHHHHHHH
Q 037721 422 MVDVNKEPGASIRANQKWWRE 442 (465)
Q Consensus 422 l~~~~~~~~~~~~~~a~~l~~ 442 (465)
++ +++.++++.+-+.
T Consensus 317 l~------~~~~~~~~~~~~~ 331 (348)
T cd03820 317 ME------DEELRKRMGANAR 331 (348)
T ss_pred Hc------CHHHHHHHHHHHH
Confidence 98 6766555444433
No 57
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.02 E-value=1.5e-07 Score=90.32 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=75.3
Q ss_pred EEEE-ecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh--hhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVM-FPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI--PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~-~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~--~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
+|.| +..| -|+.-+-.+.++|.++||+|.+.+-+... +.++..| +++..+. ....+
T Consensus 2 kIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg-----~~y~~iG-----~~g~~--------- 60 (335)
T PF04007_consen 2 KIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYG-----IDYIVIG-----KHGDS--------- 60 (335)
T ss_pred eEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcC-----CCeEEEc-----CCCCC---------
Confidence 4554 3444 39999999999999999999998866433 4566666 8888875 11111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecch
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~ 145 (465)
....+.... .....+.+++++.+||++|+-. ++.+..+ |.-+|+|+|.+.-..
T Consensus 61 -~~~Kl~~~~-~R~~~l~~~~~~~~pDv~is~~-s~~a~~v-a~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 61 -LYGKLLESI-ERQYKLLKLIKKFKPDVAISFG-SPEAARV-AFGLGIPSIVFNDTE 113 (335)
T ss_pred -HHHHHHHHH-HHHHHHHHHHHhhCCCEEEecC-cHHHHHH-HHHhCCCeEEEecCc
Confidence 111111111 2345677888889999999755 5667778 999999999987654
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.02 E-value=3.4e-07 Score=92.03 Aligned_cols=120 Identities=15% Similarity=0.058 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh---hhcccCCCCCeeEEEccCCCCCCCCCCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR---IKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSE 85 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~---i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (465)
++.||.+++..-.|+-..+..+|+.|+++||+|++++....... ....| +.++.++.+ .... .
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~-----v~~~~~~~~-----~~~~----~ 67 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPN-----ITIHPLPPP-----PQRL----N 67 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCC-----EEEEECCCC-----cccc----c
Confidence 45678888888888889999999999999999999986643211 22233 777777521 0000 0
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC-cc----cccccccccCCeeEEEec
Q 037721 86 MTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH-YW----LPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~-~~----~~~~~A~~~giP~v~~~~ 143 (465)
.......+...........+..+++..+||+|++.... +. +..+ +...++|+|..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~-~~~~~~~~V~~~h 129 (415)
T cd03816 68 KLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLY-CLLRRTKLIIDWH 129 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHH-HHHhCCeEEEEcC
Confidence 11122222222222233444455666789999875421 11 2234 5667999887544
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.01 E-value=3.2e-07 Score=89.64 Aligned_cols=348 Identities=14% Similarity=0.047 Sum_probs=172.4
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 037721 20 AFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALD 99 (465)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (465)
..|+..-+..+++.|.+.||+|++++............. ........ ........ ... .......
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~-~~~-----~~~~~~~ 77 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK---GRLVGVER------LPVLLPVV-PLL-----KGPLLYL 77 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc---cccccccc------cccCcchh-hcc-----ccchhHH
Confidence 488899999999999999999999997754433221100 00000000 00000000 000 0001111
Q ss_pred hhHHHHHHHHh--hcCCcEEEEcCCCccc---ccccccccCCeeEEEecchHHHHHHHhccccccCCcccccCCCCCCCC
Q 037721 100 LMQPQIKTLLS--QLKPHFVFFDFTHYWL---PGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPDGFP 174 (465)
Q Consensus 100 ~~~~~l~~~l~--~~~pD~vi~D~~~~~~---~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 174 (465)
.....+...++ ..++|+|++....... ... ++..++|++......... ...
T Consensus 78 ~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~-~~~~~~~~i~~~h~~~~~-----------------------~~~ 133 (377)
T cd03798 78 LAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALL-KRKLGIPLVVTLHGSDVN-----------------------LLP 133 (377)
T ss_pred HHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHH-HHhcCCCEEEEeecchhc-----------------------ccC
Confidence 23345667777 8899999988543322 244 667788988754322110 000
Q ss_pred CCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhh--CCCCeEeeccCCCCCCC
Q 037721 175 ATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQ--FKKPVLLTGPLVNPEPP 252 (465)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~~~~ 252 (465)
. .. .... .....+..++.++..+... .+.+... ...++..++.. .....
T Consensus 134 ~-----~~--~~~~----------------~~~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~~i~~~-~~~~~ 184 (377)
T cd03798 134 R-----KR--LLRA----------------LLRRALRRADAVIAVSEAL-----ADELKALGIDPEKVTVIPNG-VDTER 184 (377)
T ss_pred c-----hh--hHHH----------------HHHHHHhcCCeEEeCCHHH-----HHHHHHhcCCCCceEEcCCC-cCccc
Confidence 0 00 0000 0011234566666655321 1122222 23355555543 22111
Q ss_pred CCcchhhhccccCCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhc-
Q 037721 253 SGELEERWAKWLCKYPPKSVIYCSFGSETF-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV- 330 (465)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~- 330 (465)
-.........-+.. ..+..+++..|+... ...+.+...+..+...+.++.+.+.+.... ...+ ....+..
T Consensus 185 ~~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~------~~~~-~~~~~~~~ 256 (377)
T cd03798 185 FSPADRAEARKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL------REAL-EALAAELG 256 (377)
T ss_pred CCCcchHHHHhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc------hHHH-HHHHHhcC
Confidence 00000000000111 123466777787654 334555555555544333443333222111 0000 0111111
Q ss_pred CCCceEEecccchH---hhhccccceeecc----cCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 331 KDRGVVHTGWVQQQ---LILRHESVGCYVC----HSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 331 ~~~nv~~~~~~pq~---~vL~~~~~~~~It----HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
...|+.+.+++++. .++..+++ +|. -|..++++||+++|+|+|+-+. ......+.+. +.|...+.
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 328 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP- 328 (377)
T ss_pred CcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC-
Confidence 24589999999875 45677777 552 2456789999999999998654 3455566666 77777765
Q ss_pred CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 404 DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 404 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
-+.+++.++|.++++ ++.. +..++-.+.+.+.-+.+..++.+.+.+++
T Consensus 329 -----~~~~~l~~~i~~~~~------~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 329 -----GDPEALAEAILRLLA------DPWL-RLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred -----CCHHHHHHHHHHHhc------CcHH-HHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 489999999999998 5552 22222222332222334445555555543
No 60
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.96 E-value=2.8e-06 Score=85.40 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred CceEEecccchH---hhhccccceeecccCCh------hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 333 RGVVHTGWVQQQ---LILRHESVGCYVCHSGF------SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 333 ~nv~~~~~~pq~---~vL~~~~~~~~ItHgG~------~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
.|+.+.+|+|+. ++++.+++.++.+..+. +.+.|++++|+|+|+....+.. ....+. +.|+.++..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~ 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPE 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCC
Confidence 479999999865 46778888544444332 2478999999999997653311 112222 567777653
Q ss_pred CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 037721 404 DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 404 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
+.+++.++|.+++++ .+....+++++++..+. .=+.+..++.+++.++++
T Consensus 359 ------d~~~la~~i~~l~~~--~~~~~~~~~~a~~~~~~---~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 359 ------SVEALVAAIAALARQ--ALLRPKLGTVAREYAER---TLDKENVLRQFIADIRGL 408 (412)
T ss_pred ------CHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHH
Confidence 789999999999982 11123344444443322 224455566666655543
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.92 E-value=3.9e-07 Score=89.62 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=72.7
Q ss_pred CceEEecccc-hH---hhhccccceeecccC----ChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecC
Q 037721 333 RGVVHTGWVQ-QQ---LILRHESVGCYVCHS----GFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRD 404 (465)
Q Consensus 333 ~nv~~~~~~p-q~---~vL~~~~~~~~ItHg----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (465)
.++.+.+|++ +. .+++.+++ +|.-. ..++++||+++|+|+|+... ......+.+. +.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC--
Confidence 3688889998 43 46778888 77643 35799999999999998653 2333445554 57776665
Q ss_pred CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHH-HHHHHHcCCchHHHHHHHHHHHHh
Q 037721 405 HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKW-WREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 405 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
.+.+++.+++.++++ +++.+++..+ ..+...+.-+.++.++++++.+++
T Consensus 315 ----~~~~~~~~~l~~l~~------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 ----GDPEDLAEGIEWLLA------DPDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ----CCHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 478999999999998 5543332222 222222233445566666665543
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.91 E-value=4.1e-07 Score=91.86 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=70.5
Q ss_pred ceEEecccch-Hhhhccccceeeccc-----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCC
Q 037721 334 GVVHTGWVQQ-QLILRHESVGCYVCH-----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDG 407 (465)
Q Consensus 334 nv~~~~~~pq-~~vL~~~~~~~~ItH-----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (465)
++.+.+...+ ..+++.+++ ++.. +|..+++||+++|+|+|+-|..+++......+.+. |.++. .
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~--~----- 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQ--V----- 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEE--E-----
Confidence 3444443333 457777776 4331 34446999999999999999988888888887777 77654 3
Q ss_pred ccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH-c-CCchHHHHHHHHHH
Q 037721 408 HFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLL-N-GQIQDKFIADFVKD 460 (465)
Q Consensus 408 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~-~-~~~~~~~~~~~~~~ 460 (465)
-+++++.++|.++++ |++.++++.+-+...- + .+..++.++.+.+.
T Consensus 373 -~d~~~La~~l~~ll~------~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~ 420 (425)
T PRK05749 373 -EDAEDLAKAVTYLLT------DPDARQAYGEAGVAFLKQNQGALQRTLQLLEPY 420 (425)
T ss_pred -CCHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHh
Confidence 278999999999998 6655444433333222 2 23334444444433
No 63
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.89 E-value=1.6e-07 Score=92.83 Aligned_cols=88 Identities=15% Similarity=0.022 Sum_probs=64.3
Q ss_pred CceEEecccch---HhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCcc
Q 037721 333 RGVVHTGWVQQ---QLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHF 409 (465)
Q Consensus 333 ~nv~~~~~~pq---~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 409 (465)
.++.+.+.+++ ..++.++++ +|+-.|.. +.||.++|+|+|+.+-.++++. +.+. |.++.+. .
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~-------~ 319 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG-------T 319 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC-------C
Confidence 47888776665 456677777 99987654 7999999999999876665552 3335 7776553 3
Q ss_pred CHHHHHHHHHHhhcccCCcchHHHHHHHHHHH
Q 037721 410 GKEDIFKAVKTVMVDVNKEPGASIRANQKWWR 441 (465)
Q Consensus 410 ~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~ 441 (465)
++++|.+++.++++ +++.++++..-.
T Consensus 320 d~~~i~~ai~~ll~------~~~~~~~~~~~~ 345 (365)
T TIGR00236 320 DKENITKAAKRLLT------DPDEYKKMSNAS 345 (365)
T ss_pred CHHHHHHHHHHHHh------ChHHHHHhhhcC
Confidence 78999999999998 777766554433
No 64
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.87 E-value=6.4e-07 Score=86.77 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=79.3
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccch-H
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQQ-Q 344 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~ 344 (465)
++.+++..|+... ...+.+...+..+... +.++++. |.+... ..+ ....+.. ...++.+.+|.++ .
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~~-------~~~-~~~~~~~~~~~~v~~~g~~~~~~ 258 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDGPLR-------EEL-EALAKELGLADRVHFLGFQSNPY 258 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCCccH-------HHH-HHHHHhcCCCccEEEecccCCHH
Confidence 3467777787653 3345555555555443 4455444 332111 000 0111221 2347888888765 4
Q ss_pred hhhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHH---HHH
Q 037721 345 LILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDI---FKA 417 (465)
Q Consensus 345 ~vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l---~~a 417 (465)
+++..+++ +|.- |..++++||+++|+|+|+... ......+++. +.|...+.. +.+.+ .++
T Consensus 259 ~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~------~~~~~~~~~~~ 325 (353)
T cd03811 259 PYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPVG------DEAALAAAALA 325 (353)
T ss_pred HHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECCC------CHHHHHHHHHH
Confidence 68888888 6532 335789999999999998543 3666777777 888887764 67777 555
Q ss_pred HHHhhc
Q 037721 418 VKTVMV 423 (465)
Q Consensus 418 i~~ll~ 423 (465)
+.+++.
T Consensus 326 i~~~~~ 331 (353)
T cd03811 326 LLDLLL 331 (353)
T ss_pred HHhccC
Confidence 656665
No 65
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.84 E-value=1.7e-06 Score=84.84 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCceEEec-ccchH---hhhccccceeecc--c----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEee
Q 037721 332 DRGVVHTG-WVQQQ---LILRHESVGCYVC--H----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 332 ~~nv~~~~-~~pq~---~vL~~~~~~~~It--H----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 401 (465)
..++.+.+ |+|+. .+++.+++ +|. + |..++++||+++|+|+|+-+..+ ...+... +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 34777765 48764 57777777 552 2 33468999999999999977543 3445556 7787776
Q ss_pred ecCCCCccCHHHHHHHHHHhhc
Q 037721 402 RRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 402 ~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.. +.+++.+++.++++
T Consensus 318 ~~------d~~~~~~~l~~l~~ 333 (366)
T cd03822 318 PG------DPAALAEAIRRLLA 333 (366)
T ss_pred CC------CHHHHHHHHHHHHc
Confidence 53 78999999999998
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.84 E-value=9.1e-08 Score=94.44 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=86.3
Q ss_pred CeEEEEEeCCcccC-CHHHHHHHHHHHHhcCC-CeEEEEcCCCCCCCcccccccCChhhhhhcC--CCceEEecccchH-
Q 037721 270 KSVIYCSFGSETFL-TVDQIKELAIGLEITGL-PFFLVLNFPPNVDGQSELVRTLPPGFMDRVK--DRGVVHTGWVQQQ- 344 (465)
Q Consensus 270 ~~~v~vs~GS~~~~-~~~~~~~i~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~~~~~~pq~- 344 (465)
++.|++++|..... ....+..++++++.... ++.++....... ...+-+ ...+.. ..++.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~------~~~l~~-~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT------RPRIRE-AGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh------HHHHHH-HHHhhccCCCCEEEECCcCHHH
Confidence 55788888876543 34567777777765432 244443322110 011111 111111 3578777766544
Q ss_pred --hhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 345 --LILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 345 --~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
.++..+++ ||+.+| |.+.||++.|+|+|+++.. |. +..+.+. |+++.+. -+.++|.++|.+++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~-------~~~~~i~~~i~~ll 335 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG-------TDPEAILAAIEKLL 335 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC-------CCHHHHHHHHHHHh
Confidence 45667788 999999 7888999999999998743 22 3345556 7775553 25899999999999
Q ss_pred cccCCcchHHHHHHH
Q 037721 423 VDVNKEPGASIRANQ 437 (465)
Q Consensus 423 ~~~~~~~~~~~~~~a 437 (465)
+ ++..+++.
T Consensus 336 ~------~~~~~~~~ 344 (363)
T cd03786 336 S------DEFAYSLM 344 (363)
T ss_pred c------CchhhhcC
Confidence 8 65555433
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.83 E-value=4e-06 Score=82.13 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=78.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhcC-CCeEEEEcCCCCCCCcccccccCChhhhhh-cCCCceEEecccchH---hh
Q 037721 272 VIYCSFGSETFLTVDQIKELAIGLEITG-LPFFLVLNFPPNVDGQSELVRTLPPGFMDR-VKDRGVVHTGWVQQQ---LI 346 (465)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~i~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq~---~v 346 (465)
.+++..|+... ...+..++++++... .++++.-.+. . ...+- ...++ ....|+.+.+|+|+. .+
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~-~-------~~~~~-~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP-L-------EAELE-ALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh-h-------HHHHH-HHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 56677777643 223444555555444 5544443221 0 11110 11111 134689999999975 46
Q ss_pred hccccceeecc---cCCh-hhHHHHHHhCCceeeccccccchhhHHHHhh-hhcceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 347 LRHESVGCYVC---HSGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAG-DLKAGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 347 L~~~~~~~~It---HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~-~~G~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
++.+++.++-+ +.|+ .++.||+++|+|+|+....+.+ ..+.. . +.|...+. -+.+++.++|.++
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~------~d~~~~~~~i~~l 329 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP------GDPAALAEAIRRL 329 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC------CCHHHHHHHHHHH
Confidence 66778733333 2343 4799999999999996544444 33333 5 77877765 3899999999999
Q ss_pred hc
Q 037721 422 MV 423 (465)
Q Consensus 422 l~ 423 (465)
++
T Consensus 330 ~~ 331 (357)
T cd03795 330 LE 331 (357)
T ss_pred HH
Confidence 98
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.81 E-value=1.8e-06 Score=84.44 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=80.1
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccchH-
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQQQ- 344 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq~- 344 (465)
++..++.+|+... .+.+.+...+..+... +..+++. |.+.. ...+ ..+.... ...++.+.+++|+.
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~-G~~~~-------~~~~-~~~~~~~~~~~~v~~~g~~~~~~ 248 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIV-GDGPL-------RDEL-EALIAELGLEDRVTLLGAKSQEE 248 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEE-ECCcc-------HHHH-HHHHHHcCCCCeEEECCcCChHH
Confidence 3456667777543 3446666655555544 3334443 32211 0000 0111111 23589999999754
Q ss_pred --hhhccccceeecc----------cCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHH
Q 037721 345 --LILRHESVGCYVC----------HSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKE 412 (465)
Q Consensus 345 --~vL~~~~~~~~It----------HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 412 (465)
.++..+++ +|. -|..++++||+++|+|+|+.+.. .....+++. ..|..++.. +.+
T Consensus 249 l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~~~~~~------~~~ 315 (355)
T cd03799 249 VRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGLLVPPG------DPE 315 (355)
T ss_pred HHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceEEeCCC------CHH
Confidence 46667787 555 23347999999999999996642 233455544 588777653 899
Q ss_pred HHHHHHHHhhc
Q 037721 413 DIFKAVKTVMV 423 (465)
Q Consensus 413 ~l~~ai~~ll~ 423 (465)
++.++|.++++
T Consensus 316 ~l~~~i~~~~~ 326 (355)
T cd03799 316 ALADAIERLLD 326 (355)
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.80 E-value=6.1e-06 Score=82.70 Aligned_cols=111 Identities=13% Similarity=-0.009 Sum_probs=72.4
Q ss_pred CceEEecccchH---hhhccccceeecc---cCC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCC
Q 037721 333 RGVVHTGWVQQQ---LILRHESVGCYVC---HSG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 333 ~nv~~~~~~pq~---~vL~~~~~~~~It---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
.++.+.+++++. ++++.+++ +|. +-| ..+++||+++|+|+|+... ......+.+. +.|..++..
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~-- 353 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDGH-- 353 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCCC--
Confidence 579999999864 56888888 653 223 3589999999999999654 3445566666 778877753
Q ss_pred CCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 406 DGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
+.+++.++|.++++ +++.++++.+-+....+.-+-+..++++++..+
T Consensus 354 ----d~~~la~~i~~~l~------~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 354 ----DPADWADALARLLD------DPRTRIRMGAAAVEHAAGFSWAATADGLLSSYR 400 (405)
T ss_pred ----CHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78999999999998 554443333332222222233444455544443
No 70
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.78 E-value=7e-07 Score=86.37 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=77.6
Q ss_pred chHhhhccccceeecccCChhhHHHHHHhCCceee-ccccccchhhHHHHh---hhhcceEEeee----cC-----CCCc
Q 037721 342 QQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVL-LPLKGDQFLNSKLVA---GDLKAGVEVNR----RD-----HDGH 408 (465)
Q Consensus 342 pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~-~P~~~DQ~~na~~v~---~~~G~G~~l~~----~~-----~~~~ 408 (465)
.-.+++..+++ +|+-+|..|+ |+..+|+|||+ +....-|+.||+++. .. |+.-.+-. ++ ..+.
T Consensus 228 ~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 228 DTHKALLEAEF--AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhccc
Confidence 33568889998 9999999999 99999999988 223568999999999 54 55444411 00 0235
Q ss_pred cCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 037721 409 FGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFV 458 (465)
Q Consensus 409 ~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 458 (465)
.|++.|.+++.+ .. .+.+++...++.+.+.. +++.++++.+.
T Consensus 304 ~t~~~la~~i~~-~~------~~~~~~~~~~l~~~l~~-~a~~~~A~~i~ 345 (347)
T PRK14089 304 VTVENLLKAYKE-MD------REKFFKKSKELREYLKH-GSAKNVAKILK 345 (347)
T ss_pred CCHHHHHHHHHH-HH------HHHHHHHHHHHHHHhcC-CHHHHHHHHHh
Confidence 899999999988 44 67888889999888853 55666655554
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.75 E-value=1.3e-05 Score=80.13 Aligned_cols=130 Identities=12% Similarity=0.154 Sum_probs=75.3
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHh--cCCCeEEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEecccchH-
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEI--TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQQQ- 344 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~- 344 (465)
+..+++..|.... .+.+.+...+..+.+ .+..++++ |.+.. ...+ ....++.. ..++.+.+|+|+.
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~-------~~~l-~~~~~~~~l~~~v~~~G~~~~~~ 262 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIG-GDGPK-------RILL-EEMREKYNLQDRVELLGAVPHER 262 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEE-eCCch-------HHHH-HHHHHHhCCCCeEEEeCCCCHHH
Confidence 3467777777653 345555555555543 23444433 33211 1000 11112222 3468889999864
Q ss_pred --hhhccccceeecc---cCCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 345 --LILRHESVGCYVC---HSGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 345 --~vL~~~~~~~~It---HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
.+++.+++ +|. +-|+ .+++||+++|+|+|+-+..+ ....+.+ |-+.. .. .+.+++.+++
T Consensus 263 ~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~-~~------~~~~~l~~~l 327 (398)
T cd03796 263 VRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILL-AE------PDVESIVRKL 327 (398)
T ss_pred HHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceee-cC------CCHHHHHHHH
Confidence 46777887 653 2244 49999999999999976643 2334433 43322 22 3789999999
Q ss_pred HHhhc
Q 037721 419 KTVMV 423 (465)
Q Consensus 419 ~~ll~ 423 (465)
.++++
T Consensus 328 ~~~l~ 332 (398)
T cd03796 328 EEAIS 332 (398)
T ss_pred HHHHh
Confidence 99987
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.75 E-value=3e-06 Score=82.92 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCceEEecccchHh---hhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecC
Q 037721 332 DRGVVHTGWVQQQL---ILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRD 404 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (465)
..++.+.+|+++.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .....+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeCC--
Confidence 45899999999654 5777787 5432 2246899999999999996543 3334343 3 66665543
Q ss_pred CCCccCHHHHHHHHHHhhc
Q 037721 405 HDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 405 ~~~~~~~~~l~~ai~~ll~ 423 (465)
+.+++.++|.++++
T Consensus 331 -----~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 -----DVDALAAALRRALE 344 (375)
T ss_pred -----ChHHHHHHHHHHHh
Confidence 44999999999998
No 73
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.74 E-value=8.6e-06 Score=79.78 Aligned_cols=136 Identities=11% Similarity=0.022 Sum_probs=80.5
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhcCCCe-EEEEcCCCCCCCcccccccCChhh---hhhcC-CCceEEecccch
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEITGLPF-FLVLNFPPNVDGQSELVRTLPPGF---MDRVK-DRGVVHTGWVQQ 343 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~lp~~~---~~~~~-~~nv~~~~~~pq 343 (465)
+..+++..|.... ...+.+..++..+...+..+ ++.+|...... ..-... ....+ ..++.+.+|.+.
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRR-------FYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccc-------hHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 3356666777653 44566777776666533333 33344332110 111111 11111 347888888543
Q ss_pred -Hhhhccccceeecc--cCC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHH
Q 037721 344 -QLILRHESVGCYVC--HSG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVK 419 (465)
Q Consensus 344 -~~vL~~~~~~~~It--HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~ 419 (465)
..++..+++-++-+ +-| .++++||+++|+|+|+.-. ......+.+. +.|..++. -+.+++.++|.
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~------~~~~~l~~~i~ 325 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP------GDAEALAQALD 325 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC------CCHHHHHHHHH
Confidence 46788888833333 223 3699999999999998643 3445566665 67887765 38999999997
Q ss_pred Hhhc
Q 037721 420 TVMV 423 (465)
Q Consensus 420 ~ll~ 423 (465)
.++.
T Consensus 326 ~~~~ 329 (355)
T cd03819 326 QILS 329 (355)
T ss_pred HHHh
Confidence 5554
No 74
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.72 E-value=9.9e-06 Score=80.73 Aligned_cols=136 Identities=9% Similarity=-0.048 Sum_probs=80.3
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhc-----CCCeEEEEcCCCCCCCcccccccCChhhhh---h-c-CCCceEEe
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEIT-----GLPFFLVLNFPPNVDGQSELVRTLPPGFMD---R-V-KDRGVVHT 338 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~---~-~-~~~nv~~~ 338 (465)
...+++..|+... .+.+.+.+++..+... +.++++ +|.+..... .....-+.+.. + . ...++.+.
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i-~G~~~~~~~---~~~~~~~~l~~~~~~~~~l~~~V~f~ 285 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVI-AGGYDPRVA---ENVEYLEELQRLAEELLLLEDQVIFL 285 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEE-EcCCCCCCc---hhHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3467777887654 4456655555555432 344444 443311000 00000011111 1 1 13589999
Q ss_pred cccchH---hhhccccceeeccc---CC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCH
Q 037721 339 GWVQQQ---LILRHESVGCYVCH---SG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGK 411 (465)
Q Consensus 339 ~~~pq~---~vL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 411 (465)
+++|+. .++..+++ ++.. -| ..+++||+++|+|+|+.-. ......+.+. +.|...+ .+.
T Consensus 286 g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~-------~~~ 351 (392)
T cd03805 286 PSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCE-------PTP 351 (392)
T ss_pred CCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeC-------CCH
Confidence 999976 46777887 6532 22 3578999999999999643 3344556665 6776654 278
Q ss_pred HHHHHHHHHhhc
Q 037721 412 EDIFKAVKTVMV 423 (465)
Q Consensus 412 ~~l~~ai~~ll~ 423 (465)
+++.++|.++++
T Consensus 352 ~~~a~~i~~l~~ 363 (392)
T cd03805 352 EEFAEAMLKLAN 363 (392)
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.69 E-value=1.7e-05 Score=76.92 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=74.6
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhc--CCCceEEecccchHh---hh
Q 037721 273 IYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV--KDRGVVHTGWVQQQL---IL 347 (465)
Q Consensus 273 v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq~~---vL 347 (465)
+.+..|.... ......++++++..+.++++.-.+. ..+ .+ ....... ...++.+.+++++.+ ++
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~-~~~-------~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~ 241 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVS-DPD-------YF-YREIAPELLDGPDIEYLGEVGGAEKAELL 241 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCC-CHH-------HH-HHHHHHhcccCCcEEEeCCCCHHHHHHHH
Confidence 4445566532 2233446666777777766543332 110 00 0011111 145899999999754 57
Q ss_pred ccccceeecc--cCCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVC--HSGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~It--HgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+.+++-++-+ +-|+ .+++||+++|+|+|+... ......+.+. ..|..++ ..+++.++|.+++.
T Consensus 242 ~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~--------~~~~l~~~l~~l~~ 307 (335)
T cd03802 242 GNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVD--------SVEELAAAVARADR 307 (335)
T ss_pred HhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeC--------CHHHHHHHHHHHhc
Confidence 7788733323 2343 589999999999998654 3344445443 3565543 28899999998876
No 76
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.69 E-value=1.3e-05 Score=81.32 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=57.9
Q ss_pred CceEEecccchHhh---hccc----cceeecccC---C-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEee
Q 037721 333 RGVVHTGWVQQQLI---LRHE----SVGCYVCHS---G-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 333 ~nv~~~~~~pq~~v---L~~~----~~~~~ItHg---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 401 (465)
.++.+.+++++.++ ++.+ ++ ||... | ..+++||+++|+|+|+-.. ......+.+. ..|+.++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeC
Confidence 46888888887654 5544 45 77643 3 3599999999999999654 3455666655 6788777
Q ss_pred ecCCCCccCHHHHHHHHHHhhc
Q 037721 402 RRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 402 ~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.. +++++.++|.++++
T Consensus 390 ~~------d~~~la~~i~~ll~ 405 (439)
T TIGR02472 390 VL------DLEAIASALEDALS 405 (439)
T ss_pred CC------CHHHHHHHHHHHHh
Confidence 64 88999999999998
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.60 E-value=4.7e-06 Score=82.17 Aligned_cols=130 Identities=12% Similarity=0.190 Sum_probs=77.2
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEecccch--Hh-
Q 037721 272 VIYCSFGSETFLTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQQ--QL- 345 (465)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq--~~- 345 (465)
.+++..|.........+..+++++... +.+++ .+|.+.. ...+ ....+..+ ..++.+.+|+++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g~~-------~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDGSD-------FEKC-KAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCCcc-------HHHH-HHHHHHcCCCCeEEEecccCCcHHHH
Confidence 556677776432233455566666544 33333 4444321 1111 11111111 358999999754 22
Q ss_pred --hhccccceeeccc----CChhhHHHHHHhCCceeecc-ccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 346 --ILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLP-LKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 346 --vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
.+..+++ +|.. |-..++.||+++|+|+|+.- .. .....+++. ..|..++. -+.+++.++|
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~-~~G~lv~~------~d~~~la~~i 318 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPG-LNGELYTP------GNIDEFVGKL 318 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCC-CceEEECC------CCHHHHHHHH
Confidence 3444566 6643 22479999999999999865 32 233456655 66877765 4899999999
Q ss_pred HHhhc
Q 037721 419 KTVMV 423 (465)
Q Consensus 419 ~~ll~ 423 (465)
.++++
T Consensus 319 ~~l~~ 323 (359)
T PRK09922 319 NKVIS 323 (359)
T ss_pred HHHHh
Confidence 99998
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.58 E-value=2.4e-05 Score=76.25 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=65.7
Q ss_pred CceEEecccc-hHhhhccccceeecccCC----hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCC
Q 037721 333 RGVVHTGWVQ-QQLILRHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDG 407 (465)
Q Consensus 333 ~nv~~~~~~p-q~~vL~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (465)
.++.+.++.. ..++++.+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC-----
Confidence 3566666544 3568888888 775544 379999999999999854 3444555554 3444544
Q ss_pred ccCHHHHHHHHHHhhcccCCcchHH-HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 037721 408 HFGKEDIFKAVKTVMVDVNKEPGAS-IRANQKWWREFLLNGQIQDKFIADFVK 459 (465)
Q Consensus 408 ~~~~~~l~~ai~~ll~~~~~~~~~~-~~~~a~~l~~~~~~~~~~~~~~~~~~~ 459 (465)
-+.+++.++|.++++ +++ +++..+...+.+++.=+-++.++.+.+
T Consensus 317 -~~~~~l~~~i~~l~~------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 317 -GDPEALAEAIEALLA------DPALRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred -CCHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 378999999999998 433 333333333444433344444554443
No 79
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=3.8e-05 Score=74.15 Aligned_cols=346 Identities=15% Similarity=0.127 Sum_probs=181.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEe-CCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFS-APGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~-~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
-.+-+-.-+.|-++-..+|.++|.++ ++.+++-+ ++...+.+.+.. .+.+...-+| -+
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~--~~~v~h~YlP--------~D--------- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF--GDSVIHQYLP--------LD--------- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc--CCCeEEEecC--------cC---------
Confidence 35566667899999999999999998 88888877 666666655432 2223333333 11
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCccc--ccccccccCCeeEEEecchHHHHHHHhccccccCCccccc
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWL--PGLVGSQLGIKTVNFSVFSAISQAYLVVPARKLNNSLADL 166 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (465)
....+.+.++.++||++|.--...|- ..- ++..|+|.+.+..
T Consensus 111 ------------~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e-~~~~~~p~~LvNa----------------------- 154 (419)
T COG1519 111 ------------LPIAVRRFLRKWRPKLLIIMETELWPNLINE-LKRRGIPLVLVNA----------------------- 154 (419)
T ss_pred ------------chHHHHHHHHhcCCCEEEEEeccccHHHHHH-HHHcCCCEEEEee-----------------------
Confidence 11234566777899985543335554 355 7789999998632
Q ss_pred CCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeeccC
Q 037721 167 MKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTGPL 246 (465)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~ 246 (465)
.+...+. -.+...+.+.+ ..+.+.++++.-|-.+ .+.+....-+++..+|.+
T Consensus 155 -----RLS~rS~--~~y~k~~~~~~----------------~~~~~i~li~aQse~D-----~~Rf~~LGa~~v~v~GNl 206 (419)
T COG1519 155 -----RLSDRSF--ARYAKLKFLAR----------------LLFKNIDLILAQSEED-----AQRFRSLGAKPVVVTGNL 206 (419)
T ss_pred -----eechhhh--HHHHHHHHHHH----------------HHHHhcceeeecCHHH-----HHHHHhcCCcceEEecce
Confidence 1111000 00111111110 1123445555433211 112223333457777766
Q ss_pred CCCCCCC-Ccch---hhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcC--CCeEEEEcCCCCCCCccccc-
Q 037721 247 VNPEPPS-GELE---ERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITG--LPFFLVLNFPPNVDGQSELV- 319 (465)
Q Consensus 247 ~~~~~~~-~~~~---~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~~~~~~- 319 (465)
...-.. ..+. ..++..++.. ..+.|..+|.. ...+.......++.+.. ...||+=+....-..=+++.
T Consensus 207 -Kfd~~~~~~~~~~~~~~r~~l~~~---r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~ 281 (419)
T COG1519 207 -KFDIEPPPQLAAELAALRRQLGGH---RPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLK 281 (419)
T ss_pred -eecCCCChhhHHHHHHHHHhcCCC---CceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHH
Confidence 332211 1111 2233333322 24556555532 23344555555555432 44455533320000000000
Q ss_pred -ccCChhhhhh----cCCCceEEecccch-Hhhhcccccee----ecccCChhhHHHHHHhCCceeeccccccchhhHHH
Q 037721 320 -RTLPPGFMDR----VKDRGVVHTGWVQQ-QLILRHESVGC----YVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKL 389 (465)
Q Consensus 320 -~~lp~~~~~~----~~~~nv~~~~~~pq-~~vL~~~~~~~----~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~ 389 (465)
..+.-....+ ....++++.+-+-- ..++.-+++.. ++-+||+| .+|++++|+|+|.=|....|.+.+++
T Consensus 282 ~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~ 360 (419)
T COG1519 282 RKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAER 360 (419)
T ss_pred HcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHH
Confidence 0000000000 01225666555543 33444444421 36699997 68999999999999999999999999
Q ss_pred HhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhh
Q 037721 390 VAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREF-LLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 390 v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 464 (465)
+++. |.|+.++. ++.|.++++.+++ |++.+++..+=+.. +.+. ..+.+..++.++.+
T Consensus 361 l~~~-ga~~~v~~--------~~~l~~~v~~l~~------~~~~r~~~~~~~~~~v~~~---~gal~r~l~~l~~~ 418 (419)
T COG1519 361 LLQA-GAGLQVED--------ADLLAKAVELLLA------DEDKREAYGRAGLEFLAQN---RGALARTLEALKPY 418 (419)
T ss_pred HHhc-CCeEEECC--------HHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHh---hHHHHHHHHHhhhc
Confidence 9999 99998873 5778888888887 55555544333332 3322 22555555555543
No 80
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.57 E-value=2.2e-05 Score=78.58 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=56.8
Q ss_pred CCceEEecccch-Hhhhccccceeec--cc--CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCC
Q 037721 332 DRGVVHTGWVQQ-QLILRHESVGCYV--CH--SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 332 ~~nv~~~~~~pq-~~vL~~~~~~~~I--tH--gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
..++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+. ..+.. |.|+.+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~-~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALP-GAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccC-CcceEeC-C--
Confidence 458899999986 457888888 65 32 354 4699999999999998754322 12234 6777665 3
Q ss_pred CCccCHHHHHHHHHHhhc
Q 037721 406 DGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~ 423 (465)
+++++.++|.++++
T Consensus 348 ----~~~~la~ai~~ll~ 361 (397)
T TIGR03087 348 ----DPADFAAAILALLA 361 (397)
T ss_pred ----CHHHHHHHHHHHHc
Confidence 78999999999998
No 81
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.57 E-value=1.9e-05 Score=80.44 Aligned_cols=270 Identities=12% Similarity=0.062 Sum_probs=139.6
Q ss_pred hHHHHHHHHhhcCCcEEE-EcCCCcc--cccccccccCC--eeEEEecchHHHHHHHhccccccCCcccccCCCCCCCCC
Q 037721 101 MQPQIKTLLSQLKPHFVF-FDFTHYW--LPGLVGSQLGI--KTVNFSVFSAISQAYLVVPARKLNNSLADLMKSPDGFPA 175 (465)
Q Consensus 101 ~~~~l~~~l~~~~pD~vi-~D~~~~~--~~~~~A~~~gi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 175 (465)
..+.+.+.+++.+||+|| .|+-.+- ..-. +++.|+ |++-+.+.. .|
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~-lkk~Gi~ipviyYVsPq-------------------------VW--- 348 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKK-LRKRGYKGKIVHYVCPS-------------------------IW--- 348 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHH-HHhcCCCCCEEEEECcc-------------------------ce---
Confidence 456777888888999966 5874333 2345 677886 987653311 11
Q ss_pred CccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeec-cCCCCCCCCC
Q 037721 176 TSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTG-PLVNPEPPSG 254 (465)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~ 254 (465)
. ++..+++.+.+ ..|.+++ ...+|.++. + ..+-++.+|| |+ ...-...
T Consensus 349 ---A-WR~~Rikki~k--------------------~vD~ll~--IfPFE~~~y---~-~~gv~v~yVGHPL-~d~i~~~ 397 (608)
T PRK01021 349 ---A-WRPKRKTILEK--------------------YLDLLLL--ILPFEQNLF---K-DSPLRTVYLGHPL-VETISSF 397 (608)
T ss_pred ---e-eCcchHHHHHH--------------------Hhhhhee--cCccCHHHH---H-hcCCCeEEECCcH-HhhcccC
Confidence 1 33333333321 1222221 223444433 2 2455799999 44 2221111
Q ss_pred cchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH--h--cCCCeEEEEcCCCCCCCcccccccCChhhhhhc
Q 037721 255 ELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLE--I--TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV 330 (465)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~--~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~ 330 (465)
...+++.+-++-.+++++|-+--||-.+--...+-.++++.+ . .+.+|++....... .+.+.+..
T Consensus 398 ~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~-----------~~~i~~~~ 466 (608)
T PRK01021 398 SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPKY-----------DHLILEVL 466 (608)
T ss_pred CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchhh-----------HHHHHHHH
Confidence 223333334444445678888889855322233333444443 2 24556554332210 01111111
Q ss_pred CCC---ceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceee-ccccccchhhHHHHhh-----------hhc
Q 037721 331 KDR---GVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVL-LPLKGDQFLNSKLVAG-----------DLK 395 (465)
Q Consensus 331 ~~~---nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~-~P~~~DQ~~na~~v~~-----------~~G 395 (465)
... .+.+..--...++++.+++ .+.-+|- .++|+...|+||++ +-...=.+..|+++.+ .+|
T Consensus 467 ~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIag 543 (608)
T PRK01021 467 QQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILG 543 (608)
T ss_pred hhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcC
Confidence 111 1222210012578888888 8887775 67899999999988 3344344455666655 112
Q ss_pred ceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC
Q 037721 396 AGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG 447 (465)
Q Consensus 396 ~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 447 (465)
-.+..+--...+..|+++|.+++ ++|.| ++..+++++..+++.+.+.+.
T Consensus 544 r~VvPEllqgQ~~~tpe~La~~l-~lL~d--~~~r~~~~~~l~~lr~~Lg~~ 592 (608)
T PRK01021 544 STIFPEFIGGKKDFQPEEVAAAL-DILKT--SQSKEKQKDACRDLYQAMNES 592 (608)
T ss_pred CCcchhhcCCcccCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhcCC
Confidence 22222211001248999999997 77762 333456777777777777533
No 82
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.55 E-value=1.7e-05 Score=78.13 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCceEEecccchHh---hhccccceeeccc----------CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceE
Q 037721 332 DRGVVHTGWVQQQL---ILRHESVGCYVCH----------SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGV 398 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~~~~~ItH----------gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 398 (465)
..++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 35788999998654 5777887 5532 2357999999999999986653 366677776 8888
Q ss_pred EeeecCCCCccCHHHHHHHHHHhhc
Q 037721 399 EVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 399 ~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.++.. +.+++.++|.++++
T Consensus 317 ~~~~~------d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPEG------DVAALAAALGRLLA 335 (367)
T ss_pred EECCC------CHHHHHHHHHHHHc
Confidence 77753 78999999999998
No 83
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.55 E-value=1.1e-05 Score=79.15 Aligned_cols=139 Identities=10% Similarity=-0.032 Sum_probs=80.7
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccch-Hhh
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQ-QLI 346 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq-~~v 346 (465)
..+.+..|+... .+.+.+...+..+... +++++++ |.+... ..+-....+.....++.+.++..+ .++
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~iv-G~g~~~-------~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 263 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLV-GDGELE-------EEIKKKVKELGLEDKVIFLGVRNDVPEL 263 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEE-eCCchH-------HHHHHHHHhcCCCCcEEEecccCCHHHH
Confidence 356667777653 3456666666665543 3344443 433110 010000101112347888887544 568
Q ss_pred hccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 347 LRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 347 L~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
+..+++ +|+- |-.++++||+++|+|+|+-...+ ....+.+ +.|..+.. -+++++.++|.+++
T Consensus 264 ~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~------~~~~~~a~~i~~l~ 329 (358)
T cd03812 264 LQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD------ESPEIWAEEILKLK 329 (358)
T ss_pred HHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC------CCHHHHHHHHHHHH
Confidence 888888 6543 34579999999999999855433 3333443 45544443 36899999999999
Q ss_pred cccCCcchHHHHHHH
Q 037721 423 VDVNKEPGASIRANQ 437 (465)
Q Consensus 423 ~~~~~~~~~~~~~~a 437 (465)
+ +++.+++.
T Consensus 330 ~------~~~~~~~~ 338 (358)
T cd03812 330 S------EDRRERSS 338 (358)
T ss_pred h------Ccchhhhh
Confidence 9 66655443
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.54 E-value=1.3e-05 Score=78.49 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=89.9
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccch-Hh
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQQ-QL 345 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~pq-~~ 345 (465)
..+++..|+... ...+.+...+..+... +++++++- .+.. ...+ ....... ...++.+.++..+ .+
T Consensus 188 ~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~-------~~~~-~~~~~~~~~~~~v~~~g~~~~~~~ 258 (360)
T cd04951 188 TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAG-DGPL-------RATL-ERLIKALGLSNRVKLLGLRDDIAA 258 (360)
T ss_pred CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEc-CCCc-------HHHH-HHHHHhcCCCCcEEEecccccHHH
Confidence 366777777543 3345555544444332 45566543 3211 0000 0111111 1347888887754 56
Q ss_pred hhccccceeecccC----ChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 346 ILRHESVGCYVCHS----GFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 346 vL~~~~~~~~ItHg----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
++..+++ +|.-. ..++++||+++|+|+|+. |...+...+++. |.. +.. -+.+++.+++.++
T Consensus 259 ~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~--~~~------~~~~~~~~~i~~l 323 (360)
T cd04951 259 YYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLI--VPI------SDPEALANKIDEI 323 (360)
T ss_pred HHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceE--eCC------CCHHHHHHHHHHH
Confidence 8888888 55432 257899999999999984 445556666654 543 443 3889999999999
Q ss_pred hcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 037721 422 MVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVK 459 (465)
Q Consensus 422 l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 459 (465)
+++ ++.+++.+.+-++.+.+.=+-+..++++.+
T Consensus 324 l~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 356 (360)
T cd04951 324 LKM-----SGEERDIIGARRERIVKKFSINSIVQQWLT 356 (360)
T ss_pred HhC-----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 842 455555444444444433333444444443
No 85
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.53 E-value=7.9e-05 Score=80.79 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=61.6
Q ss_pred CCceEEecccchHh---hhcccc--ceeeccc---CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeee
Q 037721 332 DRGVVHTGWVQQQL---ILRHES--VGCYVCH---SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNR 402 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~--~~~~ItH---gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 402 (465)
..+|.+.+++++.+ ++..++ .++||.- =|+ .+++||+++|+|+|+-... .....++.. .-|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhccC-CcEEEECC
Confidence 35688888888765 444442 1227664 233 5999999999999997543 334445544 56877776
Q ss_pred cCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHH
Q 037721 403 RDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKW 439 (465)
Q Consensus 403 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~ 439 (465)
-++++|.++|.++++ +++.++++.+
T Consensus 622 ------~D~eaLA~AL~~LL~------Dpelr~~m~~ 646 (1050)
T TIGR02468 622 ------HDQQAIADALLKLVA------DKQLWAECRQ 646 (1050)
T ss_pred ------CCHHHHHHHHHHHhh------CHHHHHHHHH
Confidence 389999999999998 6655444433
No 86
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.51 E-value=9.1e-05 Score=73.34 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=70.4
Q ss_pred ceEEecccc-hHhhhccccceeecc--c--CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCc
Q 037721 334 GVVHTGWVQ-QQLILRHESVGCYVC--H--SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGH 408 (465)
Q Consensus 334 nv~~~~~~p-q~~vL~~~~~~~~It--H--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (465)
++.+.++.. -.+++..+++ +|. + |-..+++||+++|+|+|+-.. ..+...+++. ..|..++..
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~~----- 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPPG----- 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCCC-----
Confidence 455656544 3568888888 663 2 335799999999999999654 3455566665 678777753
Q ss_pred cCHHHHHHHHHHhhcccCCcchHHHHHHHHH-HHHHHHcCCchHHHHHHHHHHHHh
Q 037721 409 FGKEDIFKAVKTVMVDVNKEPGASIRANQKW-WREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 409 ~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
+.+++.++|.++++ +++.++...+ -.+.+.+.=+.+..++++++..++
T Consensus 324 -d~~~la~~i~~l~~------~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 324 -DAVALARALQPYVS------DPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred -CHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78999999999998 5544332222 222222233444455555555443
No 87
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.44 E-value=9.7e-07 Score=71.89 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=81.3
Q ss_pred eEEEEEeCCcccCCH---HHHHHHHHHHHhcCCC-eEEEEcCCCCCCCcccccccCChhhhhh--cCCCceEEecccch-
Q 037721 271 SVIYCSFGSETFLTV---DQIKELAIGLEITGLP-FFLVLNFPPNVDGQSELVRTLPPGFMDR--VKDRGVVHTGWVQQ- 343 (465)
Q Consensus 271 ~~v~vs~GS~~~~~~---~~~~~i~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~~~pq- 343 (465)
..+||+-||...... -.-...++.|.+.|+. .|+..|.+.. ..++..... ..+-.+...+|-|-
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~---------~~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP---------FFGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc---------CCCCHHHhhcccCCeEEEEEecCccH
Confidence 379999999774221 1122355667777864 6677777621 111111111 12223445567775
Q ss_pred HhhhccccceeecccCChhhHHHHHHhCCceeeccc----cccchhhHHHHhhhhcceEEeee
Q 037721 344 QLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL----KGDQFLNSKLVAGDLKAGVEVNR 402 (465)
Q Consensus 344 ~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~l~~ 402 (465)
.+.++.+++ +|.|+|.||++|.+..|+|.|+++- .-.|-.-|..+++. |-=..-..
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~p 134 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTP 134 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeec
Confidence 567777888 9999999999999999999999993 56899999999988 76555444
No 88
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.39 E-value=0.00027 Score=69.27 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=60.5
Q ss_pred CCceEEecccchHh---hhccccceeecccC----Ch-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 332 DRGVVHTGWVQQQL---ILRHESVGCYVCHS----GF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~~~~~ItHg----G~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
..++.+.+++++.+ ++..+++ ++-+. |. +++.||+++|+|+|+....+ +...++.. |. ..+..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~--~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AI--YFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-ee--EecCc
Confidence 46899999999865 4555666 54433 22 57999999999999865432 11222222 32 23322
Q ss_pred CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH-HHHcCCchHHHHHHHHHH
Q 037721 404 DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWRE-FLLNGQIQDKFIADFVKD 460 (465)
Q Consensus 404 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~ 460 (465)
+. +.++|.++++ +++.+++..+-+. ...+.-+-+..++.+++.
T Consensus 318 ------~~--l~~~i~~l~~------~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 318 ------DD--LASLLEELEA------DPEEVSAMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred ------hH--HHHHHHHHHh------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22 9999999998 5444433332222 222222334445555543
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.37 E-value=0.00014 Score=71.05 Aligned_cols=158 Identities=12% Similarity=0.098 Sum_probs=87.9
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhcC--CCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchH---h
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEITG--LPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQ---L 345 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~ 345 (465)
.+.+..|+... .+.+.+...+..+...+ +++++. |...... ...-..........++.+.+|+|+. +
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~-G~~~~~~------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 268 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIV-GKRGWLN------EELLARLRELGLGDRVRFLGYVSDEELAA 268 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEe-cCCcccc------HHHHHHHHHcCCCCeEEECCCCChhHHHH
Confidence 45566777653 34566666555555443 454444 3321111 0000000011134589999999876 4
Q ss_pred hhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 346 ILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 346 vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
++..+++ +|.- |..++++||+++|+|+|+-...+ ....+.+ .|..+.. .+.+++.++|.++
T Consensus 269 ~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~------~~~~~~~~~i~~l 333 (365)
T cd03809 269 LYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP------LDPEALAAAIERL 333 (365)
T ss_pred HHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC------CCHHHHHHHHHHH
Confidence 6677777 5432 33468999999999999955421 1222222 2444444 3789999999999
Q ss_pred hcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 037721 422 MVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADF 457 (465)
Q Consensus 422 l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 457 (465)
++ +++.+.++.+-+....+.-+-++.++.+
T Consensus 334 ~~------~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 334 LE------DPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred hc------CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 98 7776666555444433332333344443
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.37 E-value=0.00093 Score=66.17 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=53.4
Q ss_pred CceEEec-ccchHhh---hccccceeecc-c-----CC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEee
Q 037721 333 RGVVHTG-WVQQQLI---LRHESVGCYVC-H-----SG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 333 ~nv~~~~-~~pq~~v---L~~~~~~~~It-H-----gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 401 (465)
.|+++.. |+|+.++ |+.+|+ +|. + -| -++++||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4666644 7887554 888888 663 1 12 3579999999999999643 3366677776 7888764
Q ss_pred ecCCCCccCHHHHHHHHHHhh
Q 037721 402 RRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 402 ~~~~~~~~~~~~l~~ai~~ll 422 (465)
+++++.++|.++|
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 3688999988775
No 91
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=9.3e-05 Score=70.74 Aligned_cols=211 Identities=14% Similarity=0.102 Sum_probs=115.7
Q ss_pred CCCeEeec-cCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCH---HHHHHHHHHHH--hcCCCeEEEEcCCC
Q 037721 237 KKPVLLTG-PLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTV---DQIKELAIGLE--ITGLPFFLVLNFPP 310 (465)
Q Consensus 237 ~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~---~~~~~i~~al~--~~~~~~i~~~~~~~ 310 (465)
+-...||| |+ ....+.....+.+.+-+....+++++.+--||-.+--. .-|...+..++ ..+.+|++-+....
T Consensus 155 g~~~~yVGHpl-~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~ 233 (381)
T COG0763 155 GLPCTYVGHPL-ADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK 233 (381)
T ss_pred CCCeEEeCChh-hhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH
Confidence 33488999 34 22222222334454455445556799999999664222 33333444443 23567776654431
Q ss_pred CCCCcccccccCChhhhhhcC-CCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeecc-ccccchhhHH
Q 037721 311 NVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLP-LKGDQFLNSK 388 (465)
Q Consensus 311 ~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P-~~~DQ~~na~ 388 (465)
...+-..+..... ..+..+.+.- -.+++..+++ .+.-+|- -++|+..+|+|||+.= ...=-+..++
T Consensus 234 --------~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak 301 (381)
T COG0763 234 --------YRRIIEEALKWEVAGLSLILIDGE-KRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAK 301 (381)
T ss_pred --------HHHHHHHHhhccccCceEEecCch-HHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHH
Confidence 0111111111111 0122221111 1246677777 7777765 5789999999998732 2222333444
Q ss_pred HHhhhhcceE-------EeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 037721 389 LVAGDLKAGV-------EVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDL 461 (465)
Q Consensus 389 ~v~~~~G~G~-------~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l 461 (465)
+..+.+=+++ .+-.+=-....+++.|.+++..++.| +.+...+++...++.+.++..+.++.+++.+++.+
T Consensus 302 ~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~--~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 302 RLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN--GDRREALKEKFRELHQYLREDPASEIAAQAVLELL 379 (381)
T ss_pred HhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC--hHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4444311221 00000001248899999999999983 33336788888899999987767888888888765
Q ss_pred H
Q 037721 462 K 462 (465)
Q Consensus 462 ~ 462 (465)
+
T Consensus 380 ~ 380 (381)
T COG0763 380 L 380 (381)
T ss_pred c
Confidence 4
No 92
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.32 E-value=3.1e-05 Score=76.26 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=80.4
Q ss_pred CeEEEEEeCCcc--c-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEecccc---
Q 037721 270 KSVIYCSFGSET--F-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQ--- 342 (465)
Q Consensus 270 ~~~v~vs~GS~~--~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~p--- 342 (465)
++.|+|++=-.. . ...+.+..+++++...+.++++........ ...+-+.+..... .+|+.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~------~~~i~~~i~~~~~~~~~v~l~~~l~~~~ 274 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG------SRIINEAIEEYVNEHPNFRLFKSLGQER 274 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC------chHHHHHHHHHhcCCCCEEEECCCChHH
Confidence 458888885433 2 446889999999987776666665332100 0000011111111 35788776554
Q ss_pred hHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 343 QQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 343 q~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
...+++++++ +||.++.+. .||.+.|+|+|.+- +.+ ...+. |-.+.+- . .++++|.+++.+++
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v-g-----~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV-D-----PDKEEIVKAIEKLL 337 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe-C-----CCHHHHHHHHHHHh
Confidence 5568888888 999986655 99999999999764 211 11133 4333311 2 58899999999965
Q ss_pred c
Q 037721 423 V 423 (465)
Q Consensus 423 ~ 423 (465)
+
T Consensus 338 ~ 338 (365)
T TIGR03568 338 D 338 (365)
T ss_pred C
Confidence 4
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.32 E-value=9.8e-05 Score=72.02 Aligned_cols=330 Identities=15% Similarity=0.128 Sum_probs=162.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeE-EEccCCCCCCCCCCCCCCCCCchHHH
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADI-IPLQIPHVDGLPPGLDSTSEMTPHMA 91 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (465)
|.+++....|++.- -.|.++|+++.=++.|++-... ..++.| ++. .++ +.+.- . .+.
T Consensus 1 I~i~AGE~SGD~~g-a~Li~~Lk~~~p~~~~~GvGG~--~M~~~G-----~~~l~d~-----~~lsv-----m----G~~ 58 (373)
T PF02684_consen 1 IFISAGEASGDLHG-ARLIRALKARDPDIEFYGVGGP--RMQAAG-----VESLFDM-----EELSV-----M----GFV 58 (373)
T ss_pred CEEEeeCccHHHHH-HHHHHHHHhhCCCcEEEEEech--HHHhCC-----Cceecch-----HHhhh-----c----cHH
Confidence 34556666777653 4678888887656666554432 233344 221 011 01100 0 122
Q ss_pred HHHHHH--HHhhHHHHHHHHhhcCCcEEE-EcCCCcc--cccccccccCCe--eEEEecchHHHHHHHhccccccCCccc
Q 037721 92 ELLKQA--LDLMQPQIKTLLSQLKPHFVF-FDFTHYW--LPGLVGSQLGIK--TVNFSVFSAISQAYLVVPARKLNNSLA 164 (465)
Q Consensus 92 ~~~~~~--~~~~~~~l~~~l~~~~pD~vi-~D~~~~~--~~~~~A~~~giP--~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
+.+... .......+.+.+.+.+||+|| .|+-.+- ..-. +++.|+| ++-+.+
T Consensus 59 Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~-lk~~~~~~~viyYI~--------------------- 116 (373)
T PF02684_consen 59 EVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKK-LKKRGIPIKVIYYIS--------------------- 116 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHH-HHHhCCCceEEEEEC---------------------
Confidence 222221 223456777888889999855 7874333 2344 5678888 554422
Q ss_pred ccCCCCCCCCCCccCCCChhhhhhhhhhhhcCCCCchhhhhcccccCCccEEEEcCccccccchHHHHHhhCCCCeEeec
Q 037721 165 DLMKSPDGFPATSITSLDEFVARDYLYVYTKFNGGPSVYERGIQGVDGCDVLAIKTCNEMEGPYLDFVRTQFKKPVLLTG 244 (465)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 244 (465)
|..|- |+..+++.+.. ..|.+++ ...||++++. ..+-++.|||
T Consensus 117 ----PqvWA-------Wr~~R~~~i~~--------------------~~D~ll~--ifPFE~~~y~----~~g~~~~~VG 159 (373)
T PF02684_consen 117 ----PQVWA-------WRPGRAKKIKK--------------------YVDHLLV--IFPFEPEFYK----KHGVPVTYVG 159 (373)
T ss_pred ----Cceee-------eCccHHHHHHH--------------------HHhheeE--CCcccHHHHh----ccCCCeEEEC
Confidence 11111 33333333321 1232221 2234444322 2345799999
Q ss_pred -cCCCCCCCCCcchhhhccccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHH---Hh--cCCCeEEEEcCCCCCCCcccc
Q 037721 245 -PLVNPEPPSGELEERWAKWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGL---EI--TGLPFFLVLNFPPNVDGQSEL 318 (465)
Q Consensus 245 -p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al---~~--~~~~~i~~~~~~~~~~~~~~~ 318 (465)
|+ ...-..........+.+ -.+++++|.+--||-.+--...+-.++++. .+ .+.+|++.+.....
T Consensus 160 HPl-~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~------- 230 (373)
T PF02684_consen 160 HPL-LDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVH------- 230 (373)
T ss_pred Ccc-hhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHH-------
Confidence 44 32221122223333333 234466899989985531122222233333 22 35566666533211
Q ss_pred cccCChhhhhhcCCCceEEe-cccchHhhhccccceeecccCChhhHHHHHHhCCceeec-cccccchhhHHHHhhhhcc
Q 037721 319 VRTLPPGFMDRVKDRGVVHT-GWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLL-PLKGDQFLNSKLVAGDLKA 396 (465)
Q Consensus 319 ~~~lp~~~~~~~~~~nv~~~-~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~ 396 (465)
...=...... ...++.+. ..-.-.++|..+++ .+.-+|- .++|+...|+|||++ -...=.+..|+++.+. .-
T Consensus 231 -~~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~ 304 (373)
T PF02684_consen 231 -EELIEEILAE-YPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KY 304 (373)
T ss_pred -HHHHHHHHHh-hCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CE
Confidence 0000001101 11122221 22245567888888 7776664 789999999999774 3444455666666543 22
Q ss_pred eEEeee--cC-------CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH
Q 037721 397 GVEVNR--RD-------HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLL 445 (465)
Q Consensus 397 G~~l~~--~~-------~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~ 445 (465)
+.+.. .+ -.+..|++.|.+++..++. |.+.++..+...+.++
T Consensus 305 -isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~------~~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 305 -ISLPNIIAGREVVPELIQEDATPENIAAELLELLE------NPEKRKKQKELFREIR 355 (373)
T ss_pred -eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhc------CHHHHHHHHHHHHHHH
Confidence 11110 00 0345899999999999998 5544444444444443
No 94
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.29 E-value=0.00043 Score=68.82 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=71.1
Q ss_pred ceEE-ecccchH---hhhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCC
Q 037721 334 GVVH-TGWVQQQ---LILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 334 nv~~-~~~~pq~---~vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
+++. .+++++. +++..+++ +|.= +...+++||+++|+|+|+... ......+++. +.|..++..+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCC
Confidence 4554 4567754 46777887 6642 223578999999999999653 4466667766 77888876420
Q ss_pred CCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHHhh
Q 037721 406 DGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWRE-FLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
+..-..+++.++|.++++ +++.+++..+-+. .+.+.=+-+..++++++.++++
T Consensus 334 ~~~~~~~~l~~~i~~l~~------~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 334 DADGFQAELAKAINILLA------DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKV 387 (388)
T ss_pred cccchHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 001123899999999998 5554433322222 2222223445566666655543
No 95
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.23 E-value=1.4e-06 Score=85.00 Aligned_cols=131 Identities=19% Similarity=0.151 Sum_probs=76.4
Q ss_pred CCCeEEEEEeCCcccCC-H---HHHHHHHHHHHhc-CCCeEEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEeccc
Q 037721 268 PPKSVIYCSFGSETFLT-V---DQIKELAIGLEIT-GLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWV 341 (465)
Q Consensus 268 ~~~~~v~vs~GS~~~~~-~---~~~~~i~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~ 341 (465)
.+++.++|++=...... + ..+..+++++... ++++||.+..... .... +.+... -+|+.+..-+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~------~~~~----i~~~l~~~~~v~~~~~l 247 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR------GSDI----IIEKLKKYDNVRLIEPL 247 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH------HHHH----HHHHHTT-TTEEEE---
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch------HHHH----HHHHhcccCCEEEECCC
Confidence 44779999995544444 3 5666677777665 7888888763311 1111 111111 1388777666
Q ss_pred c---hHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 342 Q---QQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 342 p---q~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
+ ...+|+++++ +||.+| |-.-||.+.|+|+|.+= |+...=.-+. . |-.+.+. .++++|.+++
T Consensus 248 ~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR---~~geRqe~r~-~-~~nvlv~-------~~~~~I~~ai 312 (346)
T PF02350_consen 248 GYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIR---DSGERQEGRE-R-GSNVLVG-------TDPEAIIQAI 312 (346)
T ss_dssp -HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECS---SS-S-HHHHH-T-TSEEEET-------SSHHHHHHHH
T ss_pred CHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEec---CCCCCHHHHh-h-cceEEeC-------CCHHHHHHHH
Confidence 5 5668889998 999999 44449999999999982 2222222222 2 5554422 5899999999
Q ss_pred HHhhc
Q 037721 419 KTVMV 423 (465)
Q Consensus 419 ~~ll~ 423 (465)
.+++.
T Consensus 313 ~~~l~ 317 (346)
T PF02350_consen 313 EKALS 317 (346)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 96
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.22 E-value=0.0011 Score=65.66 Aligned_cols=110 Identities=13% Similarity=0.098 Sum_probs=67.2
Q ss_pred CceEEeccc--chH---hhhccccceeecccC---C-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 333 RGVVHTGWV--QQQ---LILRHESVGCYVCHS---G-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 333 ~nv~~~~~~--pq~---~vL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
.++.+.++. ++. ++++.+++ |+.-+ | ..+++||+++|+|+|+.... .....+.+. ..|+.++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 467777776 432 46777777 76533 2 35999999999999996543 334456555 6676543
Q ss_pred CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHh
Q 037721 404 DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREF-LLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 404 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~l~~ 463 (465)
+.+.+.++|.++++ +++.++.+.+-+.. +.+.=+-+..++++++.+++
T Consensus 323 ------~~~~~a~~i~~ll~------~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 ------TVEEAAVRILYLLR------DPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred ------CcHHHHHHHHHHHc------CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 34567789999998 55555443333332 22222445556666665543
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.001 Score=70.37 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=72.5
Q ss_pred CCceEEecccch-Hhhhccccceeecc---cCC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCC
Q 037721 332 DRGVVHTGWVQQ-QLILRHESVGCYVC---HSG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHD 406 (465)
Q Consensus 332 ~~nv~~~~~~pq-~~vL~~~~~~~~It---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (465)
..+|.+.+|.++ ..++..+++ ||. +.| -++++||+++|+|+|+.... .....+++. ..|+.++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCC--
Confidence 357888899875 457888888 654 455 47999999999999996643 355556665 5788887653
Q ss_pred CccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 037721 407 GHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKD 460 (465)
Q Consensus 407 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 460 (465)
.+++++.+++.+++.+ -..++.+++++++... +.=+.+..++.+++.
T Consensus 644 --~~~~~La~aL~~ll~~--l~~~~~l~~~ar~~a~---~~FS~~~~~~~~~~l 690 (694)
T PRK15179 644 --VTAPDVAEALARIHDM--CAADPGIARKAADWAS---ARFSLNQMIASTVRC 690 (694)
T ss_pred --CChHHHHHHHHHHHhC--hhccHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 5666777777665541 1125677776655443 222334445555443
No 98
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.18 E-value=0.0017 Score=65.36 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=51.1
Q ss_pred EEecccchHhhhccccceeecccC----ChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCH
Q 037721 336 VHTGWVQQQLILRHESVGCYVCHS----GFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGK 411 (465)
Q Consensus 336 ~~~~~~pq~~vL~~~~~~~~ItHg----G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 411 (465)
++.++.+..+++...++ ||.-+ =.++++||+++|+|+|+.-..+ + ..+.+. +-|... . +.
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~--~------~~ 350 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY--D------DG 350 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec--C------CH
Confidence 35666677778988888 87653 3579999999999999965332 2 334333 444333 1 67
Q ss_pred HHHHHHHHHhhc
Q 037721 412 EDIFKAVKTVMV 423 (465)
Q Consensus 412 ~~l~~ai~~ll~ 423 (465)
+++.+++.++|.
T Consensus 351 ~~~a~ai~~~l~ 362 (462)
T PLN02846 351 KGFVRATLKALA 362 (462)
T ss_pred HHHHHHHHHHHc
Confidence 899999999997
No 99
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.11 E-value=0.014 Score=62.31 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=52.6
Q ss_pred CceEEeccc-ch---Hhhhcc-cc-ceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeee
Q 037721 333 RGVVHTGWV-QQ---QLILRH-ES-VGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNR 402 (465)
Q Consensus 333 ~nv~~~~~~-pq---~~vL~~-~~-~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 402 (465)
.+|.+.++. +. .+++.+ ++ .++||.= +-..+++||+++|+|+|+-- .......+++- .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~----~GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATR----FGGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCC
Confidence 467776764 32 245543 22 1226642 22359999999999999954 44566667765 67988876
Q ss_pred cCCCCccCHHHHHHHHHHhh
Q 037721 403 RDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 403 ~~~~~~~~~~~l~~ai~~ll 422 (465)
. +++++.++|.+++
T Consensus 694 ~------D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 Y------HGEEAAEKIVDFF 707 (784)
T ss_pred C------CHHHHHHHHHHHH
Confidence 4 7889999998875
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.03 E-value=0.00017 Score=70.71 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=80.8
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchH---hhhcc
Q 037721 273 IYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQ---LILRH 349 (465)
Q Consensus 273 v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~---~vL~~ 349 (465)
.++..|+... ...+..++++++..+.+++++-.+. . .. .+.+ ....|+.+.+|+|+. +++..
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~-~-------~~----~l~~-~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP-E-------LD----RLRA-KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh-h-------HH----HHHh-hcCCCEEEecCCCHHHHHHHHHh
Confidence 3445666542 2345556677776677765553332 1 11 1111 234589999999975 46778
Q ss_pred ccceeecccCCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 350 ESVGCYVCHSGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 350 ~~~~~~ItHgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+++-++-+.-|+ .++.||+++|+|+|+....+ ....+++. +.|..++.. +.+++.++|.++++
T Consensus 262 ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~------~~~~la~~i~~l~~ 325 (351)
T cd03804 262 ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ------TVESLAAAVERFEK 325 (351)
T ss_pred CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC------CHHHHHHHHHHHHh
Confidence 888333234444 46789999999999976433 44456666 788888763 78999999999998
No 101
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.99 E-value=0.0012 Score=67.60 Aligned_cols=133 Identities=12% Similarity=0.122 Sum_probs=73.5
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcC--CCceEE-ecccch--Hh
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVK--DRGVVH-TGWVQQ--QL 345 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~~-~~~~pq--~~ 345 (465)
.+++..|.... .+.+.+.+.+..+...+.++++.-.+. . ..-+.+.+... ..++.+ .++... ..
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-P---------EYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-H---------HHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 56666777653 334555555555555556655543221 0 00011111111 246654 344322 24
Q ss_pred hhccccceeeccc---CCh-hhHHHHHHhCCceeeccccc--cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHH
Q 037721 346 ILRHESVGCYVCH---SGF-SSVTEAVISDCQLVLLPLKG--DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVK 419 (465)
Q Consensus 346 vL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~ 419 (465)
++..+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.+.....+. |.|..++.. +++++.++|.
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~------~~~~l~~~i~ 437 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGY------NADALLAALR 437 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCC------CHHHHHHHHH
Confidence 6677777 6532 122 47899999999999866432 222111111234 588888763 7999999999
Q ss_pred Hhhc
Q 037721 420 TVMV 423 (465)
Q Consensus 420 ~ll~ 423 (465)
++++
T Consensus 438 ~~l~ 441 (476)
T cd03791 438 RALA 441 (476)
T ss_pred HHHH
Confidence 9885
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.98 E-value=0.0024 Score=65.34 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=73.6
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhc--CCCceE-Eecccch--H
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV--KDRGVV-HTGWVQQ--Q 344 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~-~~~~~pq--~ 344 (465)
..+++..|.... .+.+.+.+.+..+...+.++++. |.+.. ..-+.+.... .+.++. +.+|-.. .
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~~---------~~~~~l~~l~~~~~~~v~~~~g~~~~~~~ 351 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGDP---------ELEEAFRALAARYPGKVGVQIGYDEALAH 351 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCcH---------HHHHHHHHHHHHCCCcEEEEEeCCHHHHH
Confidence 356666677653 33455555444444446776665 43210 0001111111 122443 3466333 2
Q ss_pred hhhccccceeecc---cCCh-hhHHHHHHhCCceeeccccc--cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 345 LILRHESVGCYVC---HSGF-SSVTEAVISDCQLVLLPLKG--DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 345 ~vL~~~~~~~~It---HgG~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
.+++.+++ ||. +-|+ .+.+||+++|+|+|+....+ |.-.+...-.+. +.|..++.. +++++.++|
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~------d~~~la~~i 422 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDF------NAEDLLRAL 422 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCC------CHHHHHHHH
Confidence 46778888 663 2344 48999999999999865422 221111111334 678887763 889999999
Q ss_pred HHhhc
Q 037721 419 KTVMV 423 (465)
Q Consensus 419 ~~ll~ 423 (465)
.++++
T Consensus 423 ~~~l~ 427 (466)
T PRK00654 423 RRALE 427 (466)
T ss_pred HHHHH
Confidence 99875
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.97 E-value=0.0053 Score=61.81 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=52.6
Q ss_pred CceEEecccchH---hhhccccceeecc-----cCChhhHHHHHHhCCceeeccccccchhhHHHHh---hhhcceEEee
Q 037721 333 RGVVHTGWVQQQ---LILRHESVGCYVC-----HSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVA---GDLKAGVEVN 401 (465)
Q Consensus 333 ~nv~~~~~~pq~---~vL~~~~~~~~It-----HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~---~~~G~G~~l~ 401 (465)
.+|.+.+++|+. .+|..+++ +|+ |-| -++.||+++|+|+|+.-..+. ....++ +. ..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 579999999865 46777777 553 333 488999999999998653321 112222 34 566653
Q ss_pred ecCCCCccCHHHHHHHHHHhhc
Q 037721 402 RRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 402 ~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++++.++|.++++
T Consensus 377 -------~d~~~la~ai~~ll~ 391 (419)
T cd03806 377 -------STAEEYAEAIEKILS 391 (419)
T ss_pred -------CCHHHHHHHHHHHHh
Confidence 178999999999998
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=97.96 E-value=0.015 Score=59.13 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCceEEecccchHh---hhccccceeecc---cCChh-hHHHHHHhCCceeeccccccchhhHHHHhh--hhcceEEeee
Q 037721 332 DRGVVHTGWVQQQL---ILRHESVGCYVC---HSGFS-SVTEAVISDCQLVLLPLKGDQFLNSKLVAG--DLKAGVEVNR 402 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~~~~~It---HgG~~-s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~--~~G~G~~l~~ 402 (465)
..++.+.+++|+.+ +|..+++ +|+ +=|+| ++.||+++|+|+|+....+- ....+.. .-..|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 35788999998654 5777777 652 23333 79999999999999764320 0001111 10123221
Q ss_pred cCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 403 RDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 403 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
-+.+++.++|.+++++ +.+...+|.+++++..+++ +.++..+++.+.++
T Consensus 407 ------~~~~~la~ai~~ll~~-~~~~r~~m~~~ar~~~~~F----S~e~~~~~~~~~i~ 455 (463)
T PLN02949 407 ------TTVEEYADAILEVLRM-RETERLEIAAAARKRANRF----SEQRFNEDFKDAIR 455 (463)
T ss_pred ------CCHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHH
Confidence 2789999999999972 0111124555555544333 34444455444443
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.93 E-value=0.0072 Score=59.88 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=66.4
Q ss_pred CCceEEecccchHh---hhccccceeec------ccCCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEee
Q 037721 332 DRGVVHTGWVQQQL---ILRHESVGCYV------CHSGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 332 ~~nv~~~~~~pq~~---vL~~~~~~~~I------tHgG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 401 (465)
..||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...++.. + |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe
Confidence 45999999998665 56677874432 23333 469999999999998763 2223333 3 33333
Q ss_pred ecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 037721 402 RRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 402 ~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
. -+.+++.++|++++.+ +.....+++ . . +.+.-+-+..++.+++.+++.
T Consensus 324 ~------~d~~~~~~ai~~~l~~---~~~~~~~~~-~---~-~~~~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 324 A------DDPEEFVAAIEKALLE---DGPARERRR-L---R-LAAQNSWDARAAEMLEALQEN 372 (373)
T ss_pred C------CCHHHHHHHHHHHHhc---CCchHHHHH-H---H-HHHHCCHHHHHHHHHHHHHhc
Confidence 3 2799999999998762 111222221 1 1 222334455677777666654
No 106
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00023 Score=57.19 Aligned_cols=144 Identities=14% Similarity=0.093 Sum_probs=86.9
Q ss_pred EEEEeCCcccCCHHHHHH--HHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccch-Hhhhcc
Q 037721 273 IYCSFGSETFLTVDQIKE--LAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQ-QLILRH 349 (465)
Q Consensus 273 v~vs~GS~~~~~~~~~~~--i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq-~~vL~~ 349 (465)
+|||.||....-...+.. +.+-.+....++|+.+|.+. ..| +.+..+.-..+.+. ..+.+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d----------~kp------vagl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD----------IKP------VAGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC----------ccc------ccccEEEeechHHHHHHHhhc
Confidence 789999973211121111 22222334567888887641 122 01112222233443 345556
Q ss_pred ccceeecccCChhhHHHHHHhCCceeecccc--------ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 350 ESVGCYVCHSGFSSVTEAVISDCQLVLLPLK--------GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~--------~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
+++ +|+|+|.||++.++..++|.|++|-. ..|-..|..+.+. +.=+.....+ ..-.+.+.....++
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spte---~~L~a~l~~s~~~v 139 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPTE---LVLQAGLQVSVADV 139 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCCc---hhhHHhHhhhhhhh
Confidence 666 99999999999999999999999953 3688889999987 8777666543 22445556666666
Q ss_pred hcccCCcchHHHHHHHH
Q 037721 422 MVDVNKEPGASIRANQK 438 (465)
Q Consensus 422 l~~~~~~~~~~~~~~a~ 438 (465)
+.+-+-...+++.++..
T Consensus 140 ~~~~~~sl~pSler~~~ 156 (161)
T COG5017 140 LHPFPISLCPSLERRFA 156 (161)
T ss_pred cCCCccccchHHHHHHH
Confidence 65323344455555443
No 107
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.76 E-value=0.00093 Score=66.99 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=94.8
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhcCCCe-EEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEecccchHh--
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEITGLPF-FLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQQQL-- 345 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~~-- 345 (465)
+..+++.|.... .+.+.+.+.+..+...+.++ ++.+|.+.. ...+- ....+.+ ..++.+.+|+|+.+
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-------~~~l~-~~~~~~~l~~~V~~~G~~~~~el~ 293 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW-------ERRLR-TLIEQYQLEDVVEMPGFKPSHEVK 293 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh-------HHHHH-HHHHHcCCCCeEEEeCCCCHHHHH
Confidence 355666677653 33455555555554434343 333444311 11111 1111111 35799999999765
Q ss_pred -hhccccceeeccc---------CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHH
Q 037721 346 -ILRHESVGCYVCH---------SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDI 414 (465)
Q Consensus 346 -vL~~~~~~~~ItH---------gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l 414 (465)
++..+++ ||.- -|. ++++||+++|+|+|+-... .....+++. ..|..++.. +.+++
T Consensus 294 ~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~~------d~~~l 360 (406)
T PRK15427 294 AMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPEN------DAQAL 360 (406)
T ss_pred HHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCCC------CHHHH
Confidence 5667787 6542 244 5789999999999996543 344556655 678777753 89999
Q ss_pred HHHHHHhhc-ccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 415 FKAVKTVMV-DVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 415 ~~ai~~ll~-~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
.++|.++++ + .+.-.++.++++ +.+.+.=..+..++++.+.+++
T Consensus 361 a~ai~~l~~~d--~~~~~~~~~~ar---~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 361 AQRLAAFSQLD--TDELAPVVKRAR---EKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHhCC--HHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHhh
Confidence 999999986 3 111122333333 2333333445566666666554
No 108
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.74 E-value=0.0017 Score=64.53 Aligned_cols=112 Identities=9% Similarity=0.117 Sum_probs=73.6
Q ss_pred CceEEecccchHh---hhccccceeeccc----CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecC
Q 037721 333 RGVVHTGWVQQQL---ILRHESVGCYVCH----SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRD 404 (465)
Q Consensus 333 ~nv~~~~~~pq~~---vL~~~~~~~~ItH----gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 404 (465)
.++.+.+++|+.+ +++.+++ +|.- -|+ .+++||+++|+|+|+... ..+...+++. ..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEeCC-
Confidence 4788889998654 5778888 6643 333 578999999999999664 3355566665 678755433
Q ss_pred CCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 405 HDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 405 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
.+.+++.++|.++++ +++.++..++-++...+.-+-++.++++.+.+.
T Consensus 329 ----~d~~~la~~I~~ll~------d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 329 ----MTSDSIISDINRTLA------DPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred ----CCHHHHHHHHHHHHc------CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 489999999999998 665443333333333333344455555555544
No 109
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.70 E-value=0.00063 Score=59.16 Aligned_cols=142 Identities=14% Similarity=0.192 Sum_probs=87.7
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHh--cCCCeEEEEcCCCCCCCcccccccCChhhhhh-cCCCceEEecccch--
Q 037721 270 KSVIYCSFGSETF-LTVDQIKELAIGLEI--TGLPFFLVLNFPPNVDGQSELVRTLPPGFMDR-VKDRGVVHTGWVQQ-- 343 (465)
Q Consensus 270 ~~~v~vs~GS~~~-~~~~~~~~i~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~pq-- 343 (465)
++.+++..|.... .+.+.+..++.-+.. ...-.++.+|... ....+ ....+. ....++.+.++.++
T Consensus 14 ~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~-------~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 14 KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE-------YKKEL-KNLIEKLNLKENIIFLGYVPDDE 85 (172)
T ss_dssp TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC-------HHHHH-HHHHHHTTCGTTEEEEESHSHHH
T ss_pred CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc-------ccccc-ccccccccccccccccccccccc
Confidence 4467777777654 344555554444432 2222344444210 01111 011111 12347888899873
Q ss_pred -Hhhhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 344 -QLILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 344 -~~vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
.+++..+++ +|+. |...++.||+++|+|+|+ .|...+...+... +.|..++. .+.+++.++|
T Consensus 86 l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~-~~g~~~~~------~~~~~l~~~i 152 (172)
T PF00534_consen 86 LDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDG-VNGFLFDP------NDIEELADAI 152 (172)
T ss_dssp HHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTT-TSEEEEST------TSHHHHHHHH
T ss_pred ccccccccee--ccccccccccccccccccccccceee----ccccCCceeeccc-cceEEeCC------CCHHHHHHHH
Confidence 457778888 7766 556799999999999998 5566777777776 77888876 3999999999
Q ss_pred HHhhcccCCcchHHHHHHHH
Q 037721 419 KTVMVDVNKEPGASIRANQK 438 (465)
Q Consensus 419 ~~ll~~~~~~~~~~~~~~a~ 438 (465)
.++++ +++.++++.
T Consensus 153 ~~~l~------~~~~~~~l~ 166 (172)
T PF00534_consen 153 EKLLN------DPELRQKLG 166 (172)
T ss_dssp HHHHH------HHHHHHHHH
T ss_pred HHHHC------CHHHHHHHH
Confidence 99999 665554443
No 110
>PLN00142 sucrose synthase
Probab=97.66 E-value=0.022 Score=60.93 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=40.4
Q ss_pred eccc---CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 355 YVCH---SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 355 ~ItH---gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
||.- =|+ .+++||+++|+|+|+-.. ......+++- .-|..++.. +++++.++|.+++
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P~------D~eaLA~aI~~lL 730 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDPY------HGDEAANKIADFF 730 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCCC------CHHHHHHHHHHHH
Confidence 6642 344 489999999999999544 4455666665 568888764 7788888876543
No 111
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.66 E-value=0.021 Score=57.23 Aligned_cols=139 Identities=11% Similarity=0.059 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCCe-EEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccc-h---Hhhhccccceeeccc---
Q 037721 287 QIKELAIGLEITGLPF-FLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQ-Q---QLILRHESVGCYVCH--- 358 (465)
Q Consensus 287 ~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q---~~vL~~~~~~~~ItH--- 358 (465)
.+..+++|+...+.++ ++.+|.+.. .. ..++...++.. + .++++.+++ ||.-
T Consensus 257 g~~~li~A~~~l~~~~~L~ivG~g~~---------~~---------~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~ 316 (405)
T PRK10125 257 TDQQLVREMMALGDKIELHTFGKFSP---------FT---------AGNVVNHGFETDKRKLMSALNQMDA--LVFSSRV 316 (405)
T ss_pred cHHHHHHHHHhCCCCeEEEEEcCCCc---------cc---------ccceEEecCcCCHHHHHHHHHhCCE--EEECCcc
Confidence 3466788887655443 445554311 11 12455556653 2 345556777 7653
Q ss_pred -CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHH
Q 037721 359 -SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQ 437 (465)
Q Consensus 359 -gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a 437 (465)
|--.+++||+++|+|+|+....+ ... +.+. +-|..++.. +.++|+++++..+. +..+.+..
T Consensus 317 Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~------d~~~La~~~~~~~~------~~~~~~~~ 378 (405)
T PRK10125 317 DNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEE------EVLQLAQLSKPEIA------QAVFGTTL 378 (405)
T ss_pred ccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCC------CHHHHHhccCHHHH------HHhhhhHH
Confidence 33468999999999999987654 222 3345 678888764 77888876543332 22222112
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 438 KWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
+..+++..+.-+.+.-+++.++..++
T Consensus 379 ~~~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 379 AEFSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 22333333333445556666655443
No 112
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.63 E-value=0.022 Score=58.32 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=73.9
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhh--cCCCceEEecccchH---h
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDR--VKDRGVVHTGWVQQQ---L 345 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~~~~~~pq~---~ 345 (465)
.+++..|.... .+.+.+.+.+..+...+.++++. |.+.. ...+.+... ....++.+....+.. .
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~~---------~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 361 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGDP---------ELEEALRELAERYPGNVRVIIGYDEALAHL 361 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCCH---------HHHHHHHHHHHHCCCcEEEEEcCCHHHHHH
Confidence 55666677653 34455555555554455665554 43310 011111111 112356554444543 4
Q ss_pred hhccccceeeccc---CCh-hhHHHHHHhCCceeeccccc--cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHH
Q 037721 346 ILRHESVGCYVCH---SGF-SSVTEAVISDCQLVLLPLKG--DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVK 419 (465)
Q Consensus 346 vL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~ 419 (465)
+++.+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.+...-... +.|..++. -+++++.++|.
T Consensus 362 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~------~d~~~la~~i~ 432 (473)
T TIGR02095 362 IYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE------YDPGALLAALS 432 (473)
T ss_pred HHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC------CCHHHHHHHHH
Confidence 6777787 6632 243 38899999999999866532 222111111233 67777765 38899999999
Q ss_pred Hhhc
Q 037721 420 TVMV 423 (465)
Q Consensus 420 ~ll~ 423 (465)
+++.
T Consensus 433 ~~l~ 436 (473)
T TIGR02095 433 RALR 436 (473)
T ss_pred HHHH
Confidence 9875
No 113
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.018 Score=55.59 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=72.5
Q ss_pred CceEEec---ccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCcc
Q 037721 333 RGVVHTG---WVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHF 409 (465)
Q Consensus 333 ~nv~~~~---~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 409 (465)
.++.+.. |.+...++.++.+ ++|-+|. -.-||-..|+|++++=..-||+. + .+. |.-+.+. .
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~-v~a-gt~~lvg-------~ 326 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---G-VEA-GTNILVG-------T 326 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---c-eec-CceEEeC-------c
Confidence 4666655 5566778889888 9999874 56799999999999988888887 2 334 5555544 4
Q ss_pred CHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 037721 410 GKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFV 458 (465)
Q Consensus 410 ~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 458 (465)
+.+.|.+++..+++ +++..+++.....---++..+.+-++.+.
T Consensus 327 ~~~~i~~~~~~ll~------~~~~~~~m~~~~npYgdg~as~rIv~~l~ 369 (383)
T COG0381 327 DEENILDAATELLE------DEEFYERMSNAKNPYGDGNASERIVEILL 369 (383)
T ss_pred cHHHHHHHHHHHhh------ChHHHHHHhcccCCCcCcchHHHHHHHHH
Confidence 77999999999999 77777655544433333333333333333
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.59 E-value=0.0015 Score=65.22 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=88.7
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhh-hcCCCceEEecccchHhhh
Q 037721 269 PKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMD-RVKDRGVVHTGWVQQQLIL 347 (465)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~~~~~~pq~~vL 347 (465)
++.++|.+|.+....+++.+..-.+-|+..+-..+|........ ...+-.-+.. ......+++..+.++.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG------EARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH------HHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH------HHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 35599999999999999988888888888888888887654211 1111111111 1223467777777755433
Q ss_pred ---ccccceee---cccCChhhHHHHHHhCCceeecccccc-chhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHH
Q 037721 348 ---RHESVGCY---VCHSGFSSVTEAVISDCQLVLLPLKGD-QFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKT 420 (465)
Q Consensus 348 ---~~~~~~~~---ItHgG~~s~~Eal~~GvP~l~~P~~~D-Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ 420 (465)
...|+ + ...+|++|++|||+.|||+|.+|--.= ...-+..+... |+.-.+-. +.++-.+.--+
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~-------s~~eYv~~Av~ 426 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIAD-------SEEEYVEIAVR 426 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-S-------SHHHHHHHHHH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCC-------CHHHHHHHHHH
Confidence 34555 5 456799999999999999999995332 33334445544 87754433 55665555556
Q ss_pred hhcccCCcchHHHHHHHH-HHHHHHHcC--CchHHHHHHHHHHHH
Q 037721 421 VMVDVNKEPGASIRANQK-WWREFLLNG--QIQDKFIADFVKDLK 462 (465)
Q Consensus 421 ll~~~~~~~~~~~~~~a~-~l~~~~~~~--~~~~~~~~~~~~~l~ 462 (465)
+-+ |.+++++.+ ++++.+.+. ....+.+.++.+.++
T Consensus 427 La~------D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 427 LAT------DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HhC------CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 666 555544333 333333332 223444555554444
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.57 E-value=0.035 Score=57.10 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=66.9
Q ss_pred CCceEEecccchHhhhccccceeecc---cCC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec-CCC
Q 037721 332 DRGVVHTGWVQQQLILRHESVGCYVC---HSG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR-DHD 406 (465)
Q Consensus 332 ~~nv~~~~~~pq~~vL~~~~~~~~It---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~-~~~ 406 (465)
..+|.+.++.+..+++..+++ +|. .=| ..+++||+++|+|+|+.-.. ..+...++.- .-|..++.. +.+
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCcccc
Confidence 346888899888899999988 664 234 36899999999999996542 1244555554 567777632 100
Q ss_pred CccC-HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHH
Q 037721 407 GHFG-KEDIFKAVKTVMVDVNKEPGASIRANQKWWREF 443 (465)
Q Consensus 407 ~~~~-~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~ 443 (465)
..-+ .++++++|.++++ .+.-..|.+++.+.++.
T Consensus 449 d~~~~~~~la~~I~~ll~---~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFN---SNDIDAFHEYSYQIAEG 483 (500)
T ss_pred chhHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHh
Confidence 0012 7889999999996 22234455555554443
No 116
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.57 E-value=0.0084 Score=59.19 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=59.0
Q ss_pred CceEEecccch-HhhhccccceeecccC--ChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCcc
Q 037721 333 RGVVHTGWVQQ-QLILRHESVGCYVCHS--GFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHF 409 (465)
Q Consensus 333 ~nv~~~~~~pq-~~vL~~~~~~~~ItHg--G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 409 (465)
.++.+.++.++ ..++..+++-++.++. ...+++||+++|+|+|+..... .....++.. ..|..++. -
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~------~ 330 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK------G 330 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC------C
Confidence 46777777665 4578888884444442 3468999999999999965321 234556665 67877776 3
Q ss_pred CHHHHHHHHHHhhc
Q 037721 410 GKEDIFKAVKTVMV 423 (465)
Q Consensus 410 ~~~~l~~ai~~ll~ 423 (465)
+.+++.++|.++++
T Consensus 331 d~~~la~~i~~ll~ 344 (372)
T cd04949 331 DIEALAEAIIELLN 344 (372)
T ss_pred cHHHHHHHHHHHHc
Confidence 89999999999998
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.57 E-value=0.0019 Score=64.78 Aligned_cols=132 Identities=13% Similarity=0.079 Sum_probs=81.1
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhc--CCCeEEEE-cCCCCCCCcccccccCChhhhhh----cCCCceEEecccc
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEIT--GLPFFLVL-NFPPNVDGQSELVRTLPPGFMDR----VKDRGVVHTGWVQ 342 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~--~~~~i~~~-~~~~~~~~~~~~~~~lp~~~~~~----~~~~nv~~~~~~p 342 (465)
...++++|.... .+.+.+.+.+..+... +.++.|.. |.+.. . +.+... ....++.+.+|++
T Consensus 230 ~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-------~----~~l~~~~~~~~~~~~V~f~G~v~ 298 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-------E----DTLKELAESKPENISVNFTGELS 298 (407)
T ss_pred CEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-------H----HHHHHHHHhcCCCceEEEecCCC
Confidence 356667777654 3345444444444333 24565543 33211 0 111111 1235788999999
Q ss_pred hHhh---hccccceeecccCC----hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHH
Q 037721 343 QQLI---LRHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIF 415 (465)
Q Consensus 343 q~~v---L~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~ 415 (465)
+.++ +..+++.+||...- -++++||+++|+|+|+-. .......+.+. +.|..++.. .+.+++.
T Consensus 299 ~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~~-----~~~~~la 368 (407)
T cd04946 299 NSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSKD-----PTPNELV 368 (407)
T ss_pred hHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCCC-----CCHHHHH
Confidence 7654 44434444765443 468999999999999854 34456666665 589887764 4889999
Q ss_pred HHHHHhhc
Q 037721 416 KAVKTVMV 423 (465)
Q Consensus 416 ~ai~~ll~ 423 (465)
++|.++++
T Consensus 369 ~~I~~ll~ 376 (407)
T cd04946 369 SSLSKFID 376 (407)
T ss_pred HHHHHHHh
Confidence 99999998
No 118
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.44 E-value=0.063 Score=56.11 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=51.3
Q ss_pred ceEEecccchH-hhhccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCc
Q 037721 334 GVVHTGWVQQQ-LILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGH 408 (465)
Q Consensus 334 nv~~~~~~pq~-~vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (465)
++.+.++.++. ++++.+++ ||.= |=.++++||+++|+|+|+.-..+... +.+ |.+..+.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec-------
Confidence 46667777765 48888888 7642 22478999999999999976644321 222 3332222
Q ss_pred cCHHHHHHHHHHhhc
Q 037721 409 FGKEDIFKAVKTVMV 423 (465)
Q Consensus 409 ~~~~~l~~ai~~ll~ 423 (465)
-+.+++.++|.++|.
T Consensus 666 ~D~EafAeAI~~LLs 680 (794)
T PLN02501 666 KTSEDFVAKVKEALA 680 (794)
T ss_pred CCHHHHHHHHHHHHh
Confidence 278999999999998
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.37 E-value=0.0083 Score=54.05 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=34.2
Q ss_pred CceEEecccch---H-hhhccccceeecccCC----hhhHHHHHHhCCceeeccccc
Q 037721 333 RGVVHTGWVQQ---Q-LILRHESVGCYVCHSG----FSSVTEAVISDCQLVLLPLKG 381 (465)
Q Consensus 333 ~nv~~~~~~pq---~-~vL~~~~~~~~ItHgG----~~s~~Eal~~GvP~l~~P~~~ 381 (465)
.|+.+.+++++ . .++..+++ +|+-.. .++++||+++|+|+|+.+..+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 47888888632 2 23333666 777775 689999999999999987644
No 120
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.15 E-value=0.0025 Score=52.88 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=68.3
Q ss_pred EEEEEeCCccc-CCHHHHHH-HHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccch-Hhhhc
Q 037721 272 VIYCSFGSETF-LTVDQIKE-LAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQ-QLILR 348 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~-i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq-~~vL~ 348 (465)
+.++++|+... ...+.+.+ ++..+.....++-+.+-+. .|+.+.+. ...|+.+.+|++. .++++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~------------~~~~l~~~-~~~~v~~~g~~~e~~~~l~ 69 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN------------GPDELKRL-RRPNVRFHGFVEELPEILA 69 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE------------SS-HHCCH-HHCTEEEE-S-HHHHHHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC------------CHHHHHHh-cCCCEEEcCCHHHHHHHHH
Confidence 34555666543 34455555 6666654433443333221 11122211 2348999999864 45788
Q ss_pred cccceeeccc--CC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 349 HESVGCYVCH--SG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 349 ~~~~~~~ItH--gG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++.+..+. .| -+++.|++++|+|+|+.+. ......+.. +.|..+ . -+++++.++|.++++
T Consensus 70 ~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~------~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 70 AADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-A------NDPEELAEAIERLLN 134 (135)
T ss_dssp C-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T------T-HHHHHHHHHHHHH
T ss_pred hCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-C------CCHHHHHHHHHHHhc
Confidence 8888666442 23 4899999999999999776 133344445 888777 3 399999999999986
No 121
>PLN02316 synthase/transferase
Probab=97.15 E-value=0.2 Score=55.32 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=50.8
Q ss_pred ceEEecccchH---hhhccccceeeccc----CChhhHHHHHHhCCceeeccccc--cchhh-------HHHHhhhhcce
Q 037721 334 GVVHTGWVQQQ---LILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKG--DQFLN-------SKLVAGDLKAG 397 (465)
Q Consensus 334 nv~~~~~~pq~---~vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~~G~G 397 (465)
++.+....+.. .+++.+++ |+.- +=..+.+||+++|+|.|+-...+ |.-.. ++..... +-|
T Consensus 901 rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tG 977 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNG 977 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cce
Confidence 55554444443 46777777 7743 22358999999999998865422 22111 1111112 467
Q ss_pred EEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 398 VEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 398 ~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..++. .+++.|..+|.+++.
T Consensus 978 flf~~------~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 978 FSFDG------ADAAGVDYALNRAIS 997 (1036)
T ss_pred EEeCC------CCHHHHHHHHHHHHh
Confidence 77776 489999999999987
No 122
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.09 E-value=0.072 Score=49.66 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=72.5
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCC--ChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 037721 21 FGHISPFVQLSNKLSLHGVKVSFFSAPG--NIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQAL 98 (465)
Q Consensus 21 ~GH~~p~l~La~~L~~rGh~V~~~~~~~--~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (465)
.-|+.-+-.|.++|.++||+|.+-+-+. ..+.+...| +.+..+. .++ ...+...... .
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg-----f~~~~Ig---k~g-------~~tl~~Kl~~-----~ 69 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG-----FPYKSIG---KHG-------GVTLKEKLLE-----S 69 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC-----CCeEeec---ccC-------CccHHHHHHH-----H
Confidence 4588889999999999999998877553 335566667 7777775 111 0011111111 1
Q ss_pred HhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecch
Q 037721 99 DLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 99 ~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~ 145 (465)
....-.|.+++.+.+||+.+. -.++.+..+ |--+|+|.+.+....
T Consensus 70 ~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rv-afgLg~psIi~~D~e 114 (346)
T COG1817 70 AERVYKLSKIIAEFKPDVAIG-KHSPELPRV-AFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHHHHHhhcCCceEee-cCCcchhhH-HhhcCCceEEecCCh
Confidence 123457889999999999999 557888899 999999999886544
No 123
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.89 E-value=0.034 Score=53.74 Aligned_cols=44 Identities=7% Similarity=0.171 Sum_probs=39.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~ 55 (465)
||+++-....|++.-+.++.++|+++ +.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 58899999999999999999999987 999999999988877764
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.88 E-value=0.0055 Score=59.69 Aligned_cols=110 Identities=14% Similarity=0.225 Sum_probs=79.9
Q ss_pred CceEEecccchHhhhccc--cceeecccC-------Ch------hhHHHHHHhCCceeeccccccchhhHHHHhhhhcce
Q 037721 333 RGVVHTGWVQQQLILRHE--SVGCYVCHS-------GF------SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAG 397 (465)
Q Consensus 333 ~nv~~~~~~pq~~vL~~~--~~~~~ItHg-------G~------~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 397 (465)
.|+.+.+|+|+.++..+- +.+++...- .+ +-+.|++++|+|+|+. ++...+..+++. ++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cce
Confidence 489999999988764421 333332211 11 2277889999999995 567788999998 999
Q ss_pred EEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 037721 398 VEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVK 459 (465)
Q Consensus 398 ~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 459 (465)
+.++ +.+++.+++.++.. ++-.+|++|++++++.++++--..+++++++.
T Consensus 282 ~~v~--------~~~el~~~l~~~~~----~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 282 FVVD--------SLEELPEIIDNITE----EEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred EEeC--------CHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 9986 34578888887542 22467899999999999987666777777664
No 125
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.75 E-value=0.044 Score=56.23 Aligned_cols=145 Identities=15% Similarity=0.092 Sum_probs=84.1
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhcCCCe-EEEEcCCCCCCCcccccccCChhhhhhcC-CCceEEecccchHhhh
Q 037721 271 SVIYCSFGSETF-LTVDQIKELAIGLEITGLPF-FLVLNFPPNVDGQSELVRTLPPGFMDRVK-DRGVVHTGWVQQQLIL 347 (465)
Q Consensus 271 ~~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~pq~~vL 347 (465)
+.+.+..|.... .+.+.+.+.+..+.+...++ ++.+|....... ....+ ..+.++.+ ..++.+.+...-.+++
T Consensus 293 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~---~~~e~-~~li~~l~l~~~V~f~G~~~v~~~l 368 (475)
T cd03813 293 PPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPE---YAEEC-RELVESLGLEDNVKFTGFQNVKEYL 368 (475)
T ss_pred CcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChH---HHHHH-HHHHHHhCCCCeEEEcCCccHHHHH
Confidence 356666777653 33455555444444333233 344554311100 00000 01111111 3578888866667888
Q ss_pred ccccceeeccc----CChhhHHHHHHhCCceeeccccccchhhHHHHhhh----hc-ceEEeeecCCCCccCHHHHHHHH
Q 037721 348 RHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGD----LK-AGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 348 ~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~----~G-~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
+.+++ +|.- |--++++||+++|+|+|+- |.......+++. +| .|..++. .+.+++.++|
T Consensus 369 ~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~------~d~~~la~ai 436 (475)
T cd03813 369 PKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP------ADPEALARAI 436 (475)
T ss_pred HhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC------CCHHHHHHHH
Confidence 88888 6533 3347999999999999994 444455555552 02 6777765 4899999999
Q ss_pred HHhhcccCCcchHHHHHHH
Q 037721 419 KTVMVDVNKEPGASIRANQ 437 (465)
Q Consensus 419 ~~ll~~~~~~~~~~~~~~a 437 (465)
.++++ |++.++++
T Consensus 437 ~~ll~------~~~~~~~~ 449 (475)
T cd03813 437 LRLLK------DPELRRAM 449 (475)
T ss_pred HHHhc------CHHHHHHH
Confidence 99998 66554443
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.062 Score=54.19 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=82.1
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhh-hcCCCceEEecccchH---
Q 037721 269 PKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMD-RVKDRGVVHTGWVQQQ--- 344 (465)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~~~~~~pq~--- 344 (465)
++.+||+||+......++.+..=++-|+..+-.++|..+++.+++ ....+-+-+.+ .+....+++..-.|..
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~----~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE----INARLRDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH----HHHHHHHHHHHcCCChhheeecCCCCCHHHH
Confidence 456999999999999999999988888888999999998864332 11111111111 1222345554555533
Q ss_pred hhhccccceeec---ccCChhhHHHHHHhCCceeeccccccchh--hHHHHhhhhcceEEeee
Q 037721 345 LILRHESVGCYV---CHSGFSSVTEAVISDCQLVLLPLKGDQFL--NSKLVAGDLKAGVEVNR 402 (465)
Q Consensus 345 ~vL~~~~~~~~I---tHgG~~s~~Eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~ 402 (465)
+=+.-+|+ |+ --||+.|..|+|..|||||.++ ++|+. |+..+....|+-..+-.
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~ 562 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD 562 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC
Confidence 33444555 64 4699999999999999999987 77764 33333333365544443
No 127
>PHA01633 putative glycosyl transferase group 1
Probab=96.16 E-value=0.26 Score=47.69 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=54.4
Q ss_pred CceEEe---cccchH---hhhccccceeeccc---CC-hhhHHHHHHhCCceeeccc------cccc------hhhHHHH
Q 037721 333 RGVVHT---GWVQQQ---LILRHESVGCYVCH---SG-FSSVTEAVISDCQLVLLPL------KGDQ------FLNSKLV 390 (465)
Q Consensus 333 ~nv~~~---~~~pq~---~vL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~l~~P~------~~DQ------~~na~~v 390 (465)
.++.+. +++++. ++++.+++ ||.- =| ..+++||+++|+|+|+--. .+|+ ..+....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 367776 445543 56777787 7753 24 4589999999999998532 3333 2233322
Q ss_pred h--hhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 391 A--GDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 391 ~--~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
. .. |.|..++. .+++++.++|.+++.
T Consensus 279 ~~~~~-g~g~~~~~------~d~~~la~ai~~~~~ 306 (335)
T PHA01633 279 YDKEH-GQKWKIHK------FQIEDMANAIILAFE 306 (335)
T ss_pred cCccc-CceeeecC------CCHHHHHHHHHHHHh
Confidence 2 34 66766664 699999999999865
No 128
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.98 E-value=0.012 Score=45.66 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=48.7
Q ss_pred hhhhccccCCCCCCeEEEEEeCCcccC---C--HHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCCh
Q 037721 257 EERWAKWLCKYPPKSVIYCSFGSETFL---T--VDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPP 324 (465)
Q Consensus 257 ~~~~~~~l~~~~~~~~v~vs~GS~~~~---~--~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~ 324 (465)
+..+..|+...+.++.|+||+||.... . ...+..++++++..+..+|+.++..... ....+|+
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~-----~lg~lP~ 94 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA-----ELGELPD 94 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG-----GCCS-TT
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH-----hhCCCCC
Confidence 455666998888899999999998753 2 2588899999999999999999876432 2456676
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.95 E-value=0.069 Score=54.17 Aligned_cols=123 Identities=13% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhh-----cCCCceEEecccch
Q 037721 269 PKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDR-----VKDRGVVHTGWVQQ 343 (465)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~nv~~~~~~pq 343 (465)
+..+||++|--....+|+.++.-++-|++.+-.++|..+.+-..+ ..|... ..+..+++..-+..
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge----------~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE----------QRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch----------HHHHHHHHHhCCCccceeeccccch
Confidence 455999999888889998888888888888999999998863221 122211 12334544333332
Q ss_pred Hh-----hhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeee
Q 037721 344 QL-----ILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNR 402 (465)
Q Consensus 344 ~~-----vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 402 (465)
.+ .|..-.+.-+.|. |+.|.++.++.|||||.+|.----...|...--.+|+|-.+-+
T Consensus 827 ~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred HHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 22 2222223335666 7899999999999999999744333333333333488875554
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.82 E-value=0.09 Score=43.67 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=65.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhh-cccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIK-SSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHM 90 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~-~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (465)
||++++.....| ...+++.|.++||+|++++.....+... ..+ +.+..++.+ . . . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~-----i~~~~~~~~----~----k---~-~--- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEG-----IKVIRLPSP----R----K---S-P--- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCC-----eEEEEecCC----C----C---c-c---
Confidence 467766665555 5678999999999999999976643322 333 777777511 0 0 0 1
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcc---cccccccccC-CeeEEEec
Q 037721 91 AELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYW---LPGLVGSQLG-IKTVNFSV 143 (465)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~---~~~~~A~~~g-iP~v~~~~ 143 (465)
...+ . . ..+..++++.+||+|.+-..... +..+ +...+ +|++....
T Consensus 58 ~~~~----~-~-~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~-~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 58 LNYI----K-Y-FRLRKIIKKEKPDVIHCHTPSPYGLFAMLA-KKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH----H-H-HHHHHHhccCCCCEEEEecCChHHHHHHHH-HHHcCCCCEEEEec
Confidence 1111 1 1 26789999999999987664432 2245 67788 88886433
No 131
>PHA01630 putative group 1 glycosyl transferase
Probab=95.52 E-value=0.62 Score=45.26 Aligned_cols=111 Identities=10% Similarity=0.036 Sum_probs=61.6
Q ss_pred cccchHh---hhccccceeecc---cCC-hhhHHHHHHhCCceeeccccc--cch---hhHHHHhh-----------hhc
Q 037721 339 GWVQQQL---ILRHESVGCYVC---HSG-FSSVTEAVISDCQLVLLPLKG--DQF---LNSKLVAG-----------DLK 395 (465)
Q Consensus 339 ~~~pq~~---vL~~~~~~~~It---HgG-~~s~~Eal~~GvP~l~~P~~~--DQ~---~na~~v~~-----------~~G 395 (465)
.++|+.+ +++.+++ |+. ..| ..+++||+++|+|+|+.-..+ |.- .|+-.+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 3466544 5777787 652 233 468999999999999966432 221 11111110 1 2
Q ss_pred ceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 396 AGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 396 ~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
+|..++ .+.+++.+++.+++.+ .++++.+++.+.-+....+.-+-++.++++.+.++
T Consensus 273 ~G~~v~-------~~~~~~~~~ii~~l~~---~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 273 VGYFLD-------PDIEDAYQKLLEALAN---WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred cccccC-------CCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344333 2567788888888871 11145555555544444444455555666665554
No 132
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.47 E-value=0.016 Score=49.08 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHHH
Q 037721 25 SPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQ 104 (465)
Q Consensus 25 ~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (465)
.-+..|+++|.++||+|++++.......-+.. ..++++..++.+... . .. .... ....
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~----~~-~~~~--------~~~~ 62 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE---EDGVRVHRLPLPRRP------W----PL-RLLR--------FLRR 62 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE---ETTEEEEEE--S-SS------S----GG-GHCC--------HHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc---cCCceEEeccCCccc------h----hh-hhHH--------HHHH
Confidence 34678999999999999999976555432111 123888887633111 0 00 0000 1134
Q ss_pred HHHHH--hhcCCcEEEEcCCCc-cccccccc-ccCCeeEEEec
Q 037721 105 IKTLL--SQLKPHFVFFDFTHY-WLPGLVGS-QLGIKTVNFSV 143 (465)
Q Consensus 105 l~~~l--~~~~pD~vi~D~~~~-~~~~~~A~-~~giP~v~~~~ 143 (465)
+.+++ ++.+||+|.+..... ....+ ++ ..++|+|....
T Consensus 63 ~~~~l~~~~~~~Dvv~~~~~~~~~~~~~-~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 63 LRRLLAARRERPDVVHAHSPTAGLVAAL-ARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHCHHCT---SEEEEEHHHHHHHHHH-HHHHHT--EEEE-S
T ss_pred HHHHHhhhccCCeEEEecccchhHHHHH-HHHccCCcEEEEEC
Confidence 45555 777999988776322 22344 55 78999987654
No 133
>PRK14098 glycogen synthase; Provisional
Probab=95.35 E-value=0.21 Score=51.38 Aligned_cols=130 Identities=8% Similarity=0.001 Sum_probs=75.3
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhc--CCCceEEecccchH---h
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRV--KDRGVVHTGWVQQQ---L 345 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~pq~---~ 345 (465)
.+++..|.... .+.+.+...+..+...+.++++. |.+.. ..-+.+.+.. .+.++.+..+.+.. .
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lviv-G~G~~---------~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVIC-GSGDK---------EYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEE-eCCCH---------HHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 45566676553 34455555555554446665544 43311 0001122111 13478887887764 5
Q ss_pred hhccccceeecccC---Ch-hhHHHHHHhCCceeeccccc--cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHH
Q 037721 346 ILRHESVGCYVCHS---GF-SSVTEAVISDCQLVLLPLKG--DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVK 419 (465)
Q Consensus 346 vL~~~~~~~~ItHg---G~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~ 419 (465)
+++.+++ |+.-+ |. .+.+||+++|+|.|+....+ |.-. ...++. +.|..++. .+++++.++|.
T Consensus 378 ~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~------~d~~~la~ai~ 446 (489)
T PRK14098 378 AIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHD------YTPEALVAKLG 446 (489)
T ss_pred HHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCC------CCHHHHHHHHH
Confidence 7778888 66432 22 47889999999988876533 2211 111234 67877765 48999999999
Q ss_pred Hhh
Q 037721 420 TVM 422 (465)
Q Consensus 420 ~ll 422 (465)
+++
T Consensus 447 ~~l 449 (489)
T PRK14098 447 EAL 449 (489)
T ss_pred HHH
Confidence 876
No 134
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.20 E-value=0.61 Score=46.85 Aligned_cols=100 Identities=8% Similarity=-0.039 Sum_probs=69.2
Q ss_pred hhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEE-eeecCCCCccCHHHHHHHHHHhhc
Q 037721 345 LILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVE-VNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 345 ~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++++++ +|..==| +..=|+..|||.+.++. |.... ..++.. |..-. .+.. .++.++|.+.+.++++
T Consensus 323 ~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K~~-~~~~~l-g~~~~~~~~~----~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 323 KILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EHKSA-GIMQQL-GLPEMAIDIR----HLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hHHHH-HHHHHc-CCccEEechh----hCCHHHHHHHHHHHHh
Confidence 67888877 8764323 56668999999999997 44433 344665 88766 4544 4899999999999998
Q ss_pred ccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 424 DVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 424 ~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
+ .+++++..++--+++++. +.+.+.++++.+.
T Consensus 392 ~-----r~~~~~~l~~~v~~~r~~--~~~~~~~~~~~~~ 423 (426)
T PRK10017 392 Q-----LPALNARLAEAVSRERQT--GMQMVQSVLERIG 423 (426)
T ss_pred C-----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 5 677777777766666642 2344555555543
No 135
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.56 E-value=0.59 Score=48.13 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCceEEecccch-Hhhhccccceeecc---cCC-hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 332 DRGVVHTGWVQQ-QLILRHESVGCYVC---HSG-FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 332 ~~nv~~~~~~pq-~~vL~~~~~~~~It---HgG-~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
..++.+.+|..+ ..+|..+++ ||. .-| .++++||+++|+|+|+... ..+...+.+. ..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC
Confidence 357888888654 457888888 875 334 4699999999999998654 3556667766 778888764
No 136
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.05 E-value=0.17 Score=44.93 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=63.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMA 91 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (465)
|||+.-=-+. +..-+..|+++|.+.||+|+++.+...++-....-++...++......+ .+............|.++.
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~-~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPG-HDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-T-TCCSTTEEEEESS-HHHHH
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEec-ccCCCCCEEEEcCcHHHHH
Confidence 5555554444 5566788999998889999999999876654332233344555443200 0000001111222332222
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEcC---------CCcc----cccccccccCCeeEEEecc
Q 037721 92 ELLKQALDLMQPQIKTLLSQLKPHFVFFDF---------THYW----LPGLVGSQLGIKTVNFSVF 144 (465)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~---------~~~~----~~~~~A~~~giP~v~~~~~ 144 (465)
.-.|..++.+.+||+||+.. ..++ +... |...|||.+.++..
T Consensus 80 ----------~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~e-a~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 ----------KLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAME-AALRGIPAIAVSLD 134 (196)
T ss_dssp ----------HHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHH-HHHTTSEEEEEEEE
T ss_pred ----------HHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHH-HHHcCCCeEEEecc
Confidence 22445555555799999742 1111 2344 55779999998653
No 137
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.99 E-value=0.6 Score=35.58 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=50.3
Q ss_pred cCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHH-
Q 037721 358 HSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRAN- 436 (465)
Q Consensus 358 HgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~- 436 (465)
+|-..-+.|++++|+|+|+-+. ......+. . |. ..-.- -+.+++.++|..+++ ++..+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~--~~~~~-----~~~~el~~~i~~ll~------~~~~~~~i 69 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GE--HIITY-----NDPEELAEKIEYLLE------NPEERRRI 69 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CC--eEEEE-----CCHHHHHHHHHHHHC------CHHHHHHH
Confidence 4556689999999999999654 22222222 1 32 22221 278999999999999 5554444
Q ss_pred HHHHHHHHHcCCchHHHHHHHH
Q 037721 437 QKWWREFLLNGQIQDKFIADFV 458 (465)
Q Consensus 437 a~~l~~~~~~~~~~~~~~~~~~ 458 (465)
+++-.+.+++.=.....++.|+
T Consensus 70 a~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 70 AKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4444455554444455566654
No 138
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.54 E-value=3.5 Score=38.78 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=39.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~ 55 (465)
||+++-..+.|++.-..++.++|+++ +.+|++++.+...+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58899999999999999999999996 489999999988877765
No 139
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.45 E-value=3.1 Score=40.16 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhh
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIK 54 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~ 54 (465)
+||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 379999999999999999999999986 89999999988776654
No 140
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.07 E-value=4.3 Score=38.33 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=73.0
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhcCC-CeEEEEcCCCCCCCcccccccCChhhhhhc-CCCceEEecccc---hHh
Q 037721 272 VIYCSFGSETF-LTVDQIKELAIGLEITGL-PFFLVLNFPPNVDGQSELVRTLPPGFMDRV-KDRGVVHTGWVQ---QQL 345 (465)
Q Consensus 272 ~v~vs~GS~~~-~~~~~~~~i~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~p---q~~ 345 (465)
.+++..|.... ...+.+...+..+..... --++.++..... ...+.. +.... ...++.+.++++ ...
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~ 272 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER------REELEK-LAKKLGLEDNVKFLGYVPDEELAE 272 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc------HHHHHH-HHHHhCCCCcEEEecccCHHHHHH
Confidence 46666666443 445555555555554432 123333333110 001111 11111 235788889988 234
Q ss_pred hhccccceeeccc---CChh-hHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHh
Q 037721 346 ILRHESVGCYVCH---SGFS-SVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTV 421 (465)
Q Consensus 346 vL~~~~~~~~ItH---gG~~-s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~l 421 (465)
++..+++ ++.- .|.| ++.||+++|+|+|... .......+.+. +.|. +... .+.+++.+++..+
T Consensus 273 ~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~-~~g~-~~~~-----~~~~~~~~~i~~~ 339 (381)
T COG0438 273 LLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDG-ETGL-LVPP-----GDVEELADALEQL 339 (381)
T ss_pred HHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCC-CceE-ecCC-----CCHHHHHHHHHHH
Confidence 5665666 5554 3554 4699999999997743 44344444443 3466 4332 2689999999999
Q ss_pred hc
Q 037721 422 MV 423 (465)
Q Consensus 422 l~ 423 (465)
++
T Consensus 340 ~~ 341 (381)
T COG0438 340 LE 341 (381)
T ss_pred hc
Confidence 98
No 141
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.00 E-value=0.44 Score=40.73 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=52.1
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 037721 20 AFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALD 99 (465)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (465)
..|=-.-+..|+++|+++||+|++++............ ......+ .... ... .. ..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~-----~~~~~~~------~~~~-----~~~--~~-~~----- 66 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELV-----KIFVKIP------YPIR-----KRF--LR-SF----- 66 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEE-----EE---TT-------SST-----SS----H-HH-----
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhcc-----ceeeeee------cccc-----ccc--ch-hH-----
Confidence 55666789999999999999999998775433322100 1111110 0000 000 00 00
Q ss_pred hhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecchH
Q 037721 100 LMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFSA 146 (465)
Q Consensus 100 ~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~~ 146 (465)
.....+.+++++.+||+|-+...........+.. ++|.+.......
T Consensus 67 ~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 67 FFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 1235677788888999994443222222220223 999988776554
No 142
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=92.18 E-value=9.7 Score=37.23 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=41.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~ 55 (465)
..+|+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 4689999999999999999999999986 899999999988877654
No 143
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.07 E-value=7.8 Score=37.82 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=66.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcccCCCCCeeE-EEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSSLNLTPMADI-IPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~g~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
||+++-....|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++- +.++ .. .. ..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~vi~~~--------~~-~~---~~- 64 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEAIPMP--------LG-HG---AL- 64 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEEEecc--------cc-cc---hh-
Confidence 79999999999999999999999985 8999999999888777653 22322 2221 00 00 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEE
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVN 140 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~ 140 (465)
. +. ....+...+++.++|+||.=........+ +...|+|.-+
T Consensus 65 ~----~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~~l-~~~~~~~~ri 106 (348)
T PRK10916 65 E----IG-----ERRRLGHSLREKRYDRAYVLPNSFKSALV-PFFAGIPHRT 106 (348)
T ss_pred h----hH-----HHHHHHHHHHhcCCCEEEECCCcHHHHHH-HHHcCCCeEe
Confidence 0 00 11234456777799998864433334455 6666777544
No 144
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=91.95 E-value=7.8 Score=37.73 Aligned_cols=105 Identities=11% Similarity=0.113 Sum_probs=67.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcccCCCCCee-EEEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSSLNLTPMAD-IIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~g~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
||+++-....|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.++ ++.++ .... . ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~--------~~~~--~-~~- 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLD--------RKKA--K-AG- 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeC--------hhhh--c-ch-
Confidence 58899999999999999999999985 8999999999888777653 2232 33332 0000 0 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEE
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVN 140 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~ 140 (465)
...+.. . -.+...+++.++|++|.-........+ +...|.|.-+
T Consensus 65 --~~~~~~----~-~~l~~~lr~~~yD~vidl~~~~~s~ll-~~l~~a~~ri 108 (344)
T TIGR02201 65 --ERKLAN----Q-FHLIKVLRANRYDLVVNLTDQWMVAIL-VKLLNARVKI 108 (344)
T ss_pred --HHHHHH----H-HHHHHHHHhCCCCEEEECCcchHHHHH-HHhcCCCeEE
Confidence 000011 1 123455677799998864433334556 7777888654
No 145
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.95 E-value=0.71 Score=42.26 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhH
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQ 102 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (465)
|.--+-.|+++|+ .+++|+++.+...++-+...-++...++...+. .........|.++ ..
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~--------~~~~av~GTPaDC----------V~ 72 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVD--------NGAYAVNGTPADC----------VI 72 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEec--------cceEEecCChHHH----------HH
Confidence 4455677888888 999999999998776654433344445554443 1111122333322 22
Q ss_pred HHHHHHHhhcCCcEEEEcCCC---------cc----cccccccccCCeeEEEecc
Q 037721 103 PQIKTLLSQLKPHFVFFDFTH---------YW----LPGLVGSQLGIKTVNFSVF 144 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~---------~~----~~~~~A~~~giP~v~~~~~ 144 (465)
-.+..++++..||+||+..-. ++ ++.= |..+|||.|.++..
T Consensus 73 lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~E-a~~~GipsIA~S~~ 126 (252)
T COG0496 73 LGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAME-AALLGIPAIAISLA 126 (252)
T ss_pred HHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHH-HHHcCccceeeeeh
Confidence 356777777889999975321 11 2233 45789999888654
No 146
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.74 E-value=0.84 Score=42.56 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=65.0
Q ss_pred EecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccch--hhHHHHhhhhcceEEeeecCCCCccCHHHH
Q 037721 337 HTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQF--LNSKLVAGDLKAGVEVNRRDHDGHFGKEDI 414 (465)
Q Consensus 337 ~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~--~na~~v~~~~G~G~~l~~~~~~~~~~~~~l 414 (465)
+.+|-...++|.++++ .|--.|- .+-.++--|||+|.+|-.+-|+ ..|.+=.++||+.+.+-.. .+..-
T Consensus 299 ~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~------~aq~a 369 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP------EAQAA 369 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC------chhhH
Confidence 3355566677777777 5544432 3345678899999999999886 4677777788998888764 34444
Q ss_pred HHHHHHhhcccCCcchHHHHHHHHH-HHHHHHcCC
Q 037721 415 FKAVKTVMVDVNKEPGASIRANQKW-WREFLLNGQ 448 (465)
Q Consensus 415 ~~ai~~ll~~~~~~~~~~~~~~a~~-l~~~~~~~~ 448 (465)
..+..++|. |+++.+++++ =.+++-+.|
T Consensus 370 ~~~~q~ll~------dp~r~~air~nGqrRiGqaG 398 (412)
T COG4370 370 AQAVQELLG------DPQRLTAIRHNGQRRIGQAG 398 (412)
T ss_pred HHHHHHHhc------ChHHHHHHHhcchhhccCcc
Confidence 445555898 8888877763 334444444
No 147
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.19 E-value=2.1 Score=43.52 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=69.8
Q ss_pred EecccchHh---hhccccceeecc---cCCh-hhHHHHHHhCCc----eeeccccccchhhHHHHhhhhcceEEeeecCC
Q 037721 337 HTGWVQQQL---ILRHESVGCYVC---HSGF-SSVTEAVISDCQ----LVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 337 ~~~~~pq~~---vL~~~~~~~~It---HgG~-~s~~Eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
+.+.+++.+ +++.+++ |+. +=|+ .++.||+++|+| +|+--+.+- +.. . +-|+.++.
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~---l-~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE---L-NGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH---h-CCcEEECC---
Confidence 344566654 4666777 664 3365 588899999999 666444332 121 2 34666665
Q ss_pred CCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 037721 406 DGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLK 462 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 462 (465)
.+.++++++|.++|+. ..++.+++.+++.+.+.. -....-++.+++.|.
T Consensus 407 ---~d~~~lA~aI~~aL~~----~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 ---YDIDGMADAIARALTM----PLEEREERHRAMMDKLRK-NDVQRWREDFLSDLN 455 (456)
T ss_pred ---CCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 4899999999999861 145677777778888765 356666788777664
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.77 E-value=10 Score=36.69 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=64.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcccCCCCCee-EEEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSSLNLTPMAD-IIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~g~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
||+|+-..+.|++.-..++.++|++. +.+|++++.+.+.+.++... .++ ++.++ .. .. ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p----~id~v~~~~--------~~-~~----~~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMP----EIRQAIDMP--------LG-HG----AL 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCc----hhceeeecC--------Cc-cc----ch
Confidence 58999999999999999999999886 89999999988777765431 222 12221 00 00 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeE
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTV 139 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v 139 (465)
.. . ....+...+++.++|++|.-........+ +...|+|.-
T Consensus 64 ~~----~-----~~~~~~~~lr~~~yD~vi~l~~~~~s~ll-~~~~~~~~r 104 (334)
T TIGR02195 64 EL----T-----ERRRLGRSLREERYDQAIVLPNSLKSALI-PFFAGIPHR 104 (334)
T ss_pred hh----h-----HHHHHHHHHhhcCCCEEEECCCCHHHHHH-HHHcCCCce
Confidence 00 0 11234456777799998875544334444 566677653
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=90.73 E-value=6.9 Score=43.06 Aligned_cols=82 Identities=7% Similarity=0.041 Sum_probs=53.4
Q ss_pred CceEEecccchH---hhhccccceeeccc----CChhhHHHHHHhCCceeeccccc--cchhh--HHHH-hhhhcceEEe
Q 037721 333 RGVVHTGWVQQQ---LILRHESVGCYVCH----SGFSSVTEAVISDCQLVLLPLKG--DQFLN--SKLV-AGDLKAGVEV 400 (465)
Q Consensus 333 ~nv~~~~~~pq~---~vL~~~~~~~~ItH----gG~~s~~Eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~~G~G~~l 400 (465)
.+|.+..+.+.. .+++.+++ ||.- +-..+.+||+++|+|.|+....+ |.-.+ ...+ ++. +-|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 468887877764 47888888 7743 22358999999999999876533 22111 1111 223 567666
Q ss_pred eecCCCCccCHHHHHHHHHHhhc
Q 037721 401 NRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 401 ~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+. .+++++.++|.+++.
T Consensus 914 ~~------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT------PDEQGLNSALERAFN 930 (977)
T ss_pred cC------CCHHHHHHHHHHHHH
Confidence 65 378889888888763
No 150
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=90.34 E-value=3.1 Score=35.99 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=48.2
Q ss_pred hCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhh-cCC
Q 037721 36 LHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQ-LKP 114 (465)
Q Consensus 36 ~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~p 114 (465)
++||+|+|++........ .| ++...+..+. ............++..........+.+.++-++ +.|
T Consensus 1 q~gh~v~fl~~~~~~~~~--~G-----V~~~~y~~~~------~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PG-----VRVVRYRPPR------GPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CC-----cEEEEeCCCC------CCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 479999999955444332 34 8888875211 100000000011111111111233444444443 489
Q ss_pred cEEEEcCCCccccccccccc-CCeeEEEec
Q 037721 115 HFVFFDFTHYWLPGLVGSQL-GIKTVNFSV 143 (465)
Q Consensus 115 D~vi~D~~~~~~~~~~A~~~-giP~v~~~~ 143 (465)
|+||+-.-...++-+ -+.+ +.|.+.+.=
T Consensus 68 DvI~~H~GWGe~Lfl-kdv~P~a~li~Y~E 96 (171)
T PF12000_consen 68 DVIIAHPGWGETLFL-KDVFPDAPLIGYFE 96 (171)
T ss_pred CEEEEcCCcchhhhH-HHhCCCCcEEEEEE
Confidence 999998833223445 7777 888887743
No 151
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=89.52 E-value=17 Score=34.92 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=41.7
Q ss_pred chHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchh----hHHHHhhhhcceEEeeec
Q 037721 342 QQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFL----NSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 342 pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~----na~~v~~~~G~G~~l~~~ 403 (465)
|+...|..++. .|||-=-.+.+.||++.|+|+.++|+-. +.. -.+.+++. |+-..++..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~~ 283 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTGW 283 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCCc
Confidence 57788888876 3566666799999999999999999876 322 22345555 666555543
No 152
>PRK14099 glycogen synthase; Provisional
Probab=88.47 E-value=10 Score=38.93 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=29.3
Q ss_pred CCcEEEEecCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 9 DQLHVVMFPWF------AFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 9 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+++||++++.. +.|=-.-.-+|.++|+++||+|.++.+..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46789987642 22333445678899999999999999864
No 153
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.84 E-value=2.6 Score=43.02 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=62.7
Q ss_pred EecccchHh---hhccccceeecc---cCCh-hhHHHHHHhCCc----eeeccccccchhhHHHHhhhhcceEEeeecCC
Q 037721 337 HTGWVQQQL---ILRHESVGCYVC---HSGF-SSVTEAVISDCQ----LVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 337 ~~~~~pq~~---vL~~~~~~~~It---HgG~-~s~~Eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
+.+++++.+ +++.+++ ||. +-|+ .+++||+++|+| +|+--..+ .+.. . .-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~---~-~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE---L-SGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhh---c-CCCEEECC---
Confidence 446777654 4667777 653 3455 478999999999 54432222 1111 2 34666665
Q ss_pred CCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 037721 406 DGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDL 461 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l 461 (465)
-+.+++.++|.+++++ ..++.+++.++..+.+.+ -+...-++.++..|
T Consensus 412 ---~d~~~la~ai~~~l~~----~~~e~~~~~~~~~~~v~~-~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ---YDIDEVADAIHRALTM----PLEERRERHRKLREYVRT-HDVQAWANSFLDDL 459 (460)
T ss_pred ---CCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHhh
Confidence 3899999999999972 023444445555555543 34555567766654
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.77 E-value=3.2 Score=35.28 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=65.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch-
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP- 88 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 88 (465)
.++|.+.-.|+.|-..-++.|++.|.+.|+.|-=+.+++..+-=.+.| |+.+++..-....+..... ..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~G-----F~Ivdl~tg~~~~la~~~~---~~~rv 76 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIG-----FKIVDLATGEEGILARVGF---SRPRV 76 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEee-----eEEEEccCCceEEEEEcCC---CCccc
Confidence 568999999999999999999999999999998887777665555566 8888885111001111000 1110
Q ss_pred HHHHHHHHHHH-hhHHHHHHHHhhcCCcEEEEcCC
Q 037721 89 HMAELLKQALD-LMQPQIKTLLSQLKPHFVFFDFT 122 (465)
Q Consensus 89 ~~~~~~~~~~~-~~~~~l~~~l~~~~pD~vi~D~~ 122 (465)
..+......++ ...+.+...++. .|+||.|-.
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~--aDvIIIDEI 109 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEE--ADVIIIDEI 109 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhc--CCEEEEecc
Confidence 11111122222 244556666654 799999974
No 155
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.48 E-value=6 Score=43.31 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=66.3
Q ss_pred cccchH---hhhccccceeeccc---CChh-hHHHHHHhCCc---eeeccccccchhhHHHHhhhhc-ceEEeeecCCCC
Q 037721 339 GWVQQQ---LILRHESVGCYVCH---SGFS-SVTEAVISDCQ---LVLLPLKGDQFLNSKLVAGDLK-AGVEVNRRDHDG 407 (465)
Q Consensus 339 ~~~pq~---~vL~~~~~~~~ItH---gG~~-s~~Eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~ 407 (465)
+++|.. ++++.+++ |+.- =|+| +.+|++++|+| ++++.-+ -..+.. . | -|+.++.
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~---l-~~~allVnP----- 427 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS---L-GAGALLVNP----- 427 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh---h-cCCeEEECC-----
Confidence 345543 56667777 6643 4775 77899999999 4444422 112221 2 4 4777776
Q ss_pred ccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 408 HFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 408 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
.+.++++++|.++|+- ..++-+++.+++.+.++.. ....-++.+++.+.+
T Consensus 428 -~D~~~lA~AI~~aL~m----~~~er~~r~~~~~~~v~~~-~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 428 -WNITEVSSAIKEALNM----SDEERETRHRHNFQYVKTH-SAQKWADDFMSELND 477 (797)
T ss_pred -CCHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhhhhC-CHHHHHHHHHHHHHH
Confidence 4899999999999961 1455666677777777655 344556666665543
No 156
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=85.77 E-value=1.8 Score=37.53 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=57.0
Q ss_pred ecCCCccCHHHHHHHHHHH-HhC-CCEEEEEeCCCChhh--hhccc-CCCCCeeEEEccCCCCCCCCCCCCCCCCCchHH
Q 037721 16 FPWFAFGHISPFVQLSNKL-SLH-GVKVSFFSAPGNIPR--IKSSL-NLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHM 90 (465)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L-~~r-Gh~V~~~~~~~~~~~--i~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (465)
+-.++.||+.-++.|.+.+ .++ .++..+++....... +++.. ......++..+| ..-+..+......
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~--------r~r~v~q~~~~~~ 74 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIP--------RAREVGQSYLTSI 74 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccc--------eEEEechhhHhhH
Confidence 3456789999999999999 333 455555655544332 22111 001111233333 1000001111111
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcc--ccccccccc------CCeeEEEec
Q 037721 91 AELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYW--LPGLVGSQL------GIKTVNFSV 143 (465)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~--~~~~~A~~~------giP~v~~~~ 143 (465)
+..+... -.-..++.+.+||+||+.--..+ ...+ |..+ |.+.|.+-+
T Consensus 75 ~~~l~~~-----~~~~~il~r~rPdvii~nGpg~~vp~~~~-~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 75 FTTLRAF-----LQSLRILRRERPDVIISNGPGTCVPVCLA-AKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHH-----HHHHHHHHHhCCCEEEEcCCceeeHHHHH-HHHHHHhhccCCcEEEEEe
Confidence 2222211 12233445668999999864333 3456 8888 888887633
No 157
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.29 E-value=2.6 Score=34.98 Aligned_cols=45 Identities=18% Similarity=-0.020 Sum_probs=39.4
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
+++.+|++.+.++-+|-.-..-++..|+++|++|+++...-..+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~ 45 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEE 45 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 357799999999999999999999999999999999987655443
No 158
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=83.85 E-value=12 Score=34.76 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=36.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEcc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~ 69 (465)
++||++.-=-|. |..-+..|+++|.+.| +|+++.+...++-....-++...+++..+.
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~ 62 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQ 62 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEc
Confidence 567765443332 3456788899998888 799998887665543322344456665553
No 159
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.03 E-value=14 Score=34.16 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEc
Q 037721 24 ISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPL 68 (465)
Q Consensus 24 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l 68 (465)
.--+..|+++|.+ +|+|+++.+...++-....-++...++...+
T Consensus 13 apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~ 56 (253)
T PRK13933 13 AEGINTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEV 56 (253)
T ss_pred ChhHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEee
Confidence 3347888999965 6899999988766543222133344555444
No 160
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.84 E-value=9.4 Score=36.76 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=35.0
Q ss_pred EEEEecC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 12 HVVMFPW-FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 12 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
||+|++. ||-|-..=..++|-.|++.|.+|.+++++.....
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 7888777 7999999999999999999998888887766544
No 161
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.64 E-value=7.6 Score=35.86 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhH
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQ 102 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (465)
|..-+..|+++|.+. |+|+++.+...++-....-++...+++..+. + ........|.++..+
T Consensus 12 ~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~----~----~~~~v~GTPaDcV~~--------- 73 (250)
T PRK00346 12 HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVD----N----GFYAVDGTPTDCVHL--------- 73 (250)
T ss_pred CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEec----C----CeEEECCcHHHHHHH---------
Confidence 344577889999988 7999999887665543322333455555542 1 111222333333221
Q ss_pred HHHHHHHhhcCCcEEEEcCCC---------cc----cccccccccCCeeEEEec
Q 037721 103 PQIKTLLSQLKPHFVFFDFTH---------YW----LPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~---------~~----~~~~~A~~~giP~v~~~~ 143 (465)
.+..++. .+||+||+..-. ++ |..- |...|||.+.++.
T Consensus 74 -gl~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~e-a~~~GiPaiA~S~ 124 (250)
T PRK00346 74 -ALNGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAME-GALLGIPAIAVSL 124 (250)
T ss_pred -HHHhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHH-HHhcCCCeEEEec
Confidence 2222332 379999975321 11 2334 5567888888764
No 162
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=82.27 E-value=28 Score=33.69 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=59.4
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHH
Q 037721 16 FPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLK 95 (465)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (465)
++.||.|-+--...|++.|.++|+++.+++.......-. . .....-. . +.+...|.+..+.+.+.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~-~------~~~v~~~-----~---~~~~~GDEp~lla~~~~ 107 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKG-E------PILVSDG-----S---DAEEVGDEPLLLARKLP 107 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCC-C------eEEEeCC-----C---ChhhhcCHHHHHHHhcC
Confidence 677899999999999999999999999998765433211 0 1111111 1 11112222211111111
Q ss_pred --HH-HHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCC
Q 037721 96 --QA-LDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGI 136 (465)
Q Consensus 96 --~~-~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~gi 136 (465)
.. ..........++++..+|+||.|-- +--..+ .+.+.|
T Consensus 108 ~~V~V~~dR~~~~~~~~~~~~~dviilDDG-fQh~~L-~rDl~I 149 (326)
T PF02606_consen 108 VPVIVGPDRVAAARAALKEFPADVIILDDG-FQHRRL-KRDLDI 149 (326)
T ss_pred CcEEEeCcHHHHHHHHHHHCCCCEEEEcCC-cccccc-cCCcEE
Confidence 00 1123566777788778999999972 222334 444444
No 163
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=80.40 E-value=12 Score=34.89 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=34.5
Q ss_pred ceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccc
Q 037721 334 GVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPL 379 (465)
Q Consensus 334 nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~ 379 (465)
.+.+..-++-.++|.+++. +||-.+ ++-+||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3445566777899999998 888765 488999999999999764
No 164
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=80.31 E-value=9.5 Score=35.13 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEcc
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~ 69 (465)
|..-+..|+++|.+.| +|+++.+...++-....-++...+++..+.
T Consensus 12 ~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~ 57 (244)
T TIGR00087 12 HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVK 57 (244)
T ss_pred CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEec
Confidence 3345778899999988 899999887766554332334456666553
No 165
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=79.82 E-value=6.8 Score=40.56 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=52.8
Q ss_pred CceEEecccc--h-HhhhccccceeecccC---ChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCC
Q 037721 333 RGVVHTGWVQ--Q-QLILRHESVGCYVCHS---GFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHD 406 (465)
Q Consensus 333 ~nv~~~~~~p--q-~~vL~~~~~~~~ItHg---G~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (465)
..|.+.++.. + ..++.++.+ +|.=+ |.++.+||+.+|+|+| .......|+.. .=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe--C---
Confidence 3677888777 3 356667666 87655 6779999999999999 33344445544 445555 2
Q ss_pred CccCHHHHHHHHHHhhc
Q 037721 407 GHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 407 ~~~~~~~l~~ai~~ll~ 423 (465)
+..+|.++|..+|.
T Consensus 474 ---d~~~l~~al~~~L~ 487 (519)
T TIGR03713 474 ---DISELLKALDYYLD 487 (519)
T ss_pred ---CHHHHHHHHHHHHh
Confidence 78999999999998
No 166
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=79.75 E-value=20 Score=33.23 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEc
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPL 68 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l 68 (465)
|..-+..|+++|++ +|+|+++.+...++-....-++...+++..+
T Consensus 12 ~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~ 56 (253)
T PRK13935 12 TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKV 56 (253)
T ss_pred CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEe
Confidence 34457788999965 5799999988766554332233334554444
No 167
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=79.40 E-value=11 Score=30.08 Aligned_cols=94 Identities=16% Similarity=0.275 Sum_probs=59.7
Q ss_pred EecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHH
Q 037721 15 MFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELL 94 (465)
Q Consensus 15 ~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (465)
|++.... +-.-++.+++.|.+.|+++. +++...+.+.+.| +.+..+.-. .+.... +
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~g-----i~~~~v~~~--~~~~~~-----~--------- 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLENG-----IPVTPVAWP--SEEPQN-----D--------- 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHcC-----CCceEeeec--cCCCCC-----C---------
Confidence 4444433 55668899999999998883 5677777777777 655554200 010000 0
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEcCC---------CcccccccccccCCeeEE
Q 037721 95 KQALDLMQPQIKTLLSQLKPHFVFFDFT---------HYWLPGLVGSQLGIKTVN 140 (465)
Q Consensus 95 ~~~~~~~~~~l~~~l~~~~pD~vi~D~~---------~~~~~~~~A~~~giP~v~ 140 (465)
.+.+.+++++.++|+||.-.. .+..... |-.+|||++.
T Consensus 60 -------~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~-Av~~~ip~iT 106 (116)
T cd01423 60 -------KPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRA-ADDFAVPLIT 106 (116)
T ss_pred -------chhHHHHHHcCCceEEEECCCCCCCccccCcEeeehh-hHhhCCcccc
Confidence 145677778889999998432 2333456 7889999873
No 168
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=79.15 E-value=2.5 Score=41.49 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=55.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHH
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAE 92 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (465)
|++---|+.|--.=+++++..|+++| .|.|++.++..+.++ .+...+..+. .+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik--------lRA~RL~~~~-----~~------------- 148 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK--------LRADRLGLPT-----NN------------- 148 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH--------HHHHHhCCCc-----cc-------------
Confidence 55556689999999999999999999 999999998887764 3333332110 00
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCcEEEEcC
Q 037721 93 LLKQALDLMQPQIKTLLSQLKPHFVFFDF 121 (465)
Q Consensus 93 ~~~~~~~~~~~~l~~~l~~~~pD~vi~D~ 121 (465)
+....+...+.+.+.+++.+||++|.|.
T Consensus 149 -l~l~aEt~~e~I~~~l~~~~p~lvVIDS 176 (456)
T COG1066 149 -LYLLAETNLEDIIAELEQEKPDLVVIDS 176 (456)
T ss_pred -eEEehhcCHHHHHHHHHhcCCCEEEEec
Confidence 0001111335566777778999999996
No 169
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.94 E-value=59 Score=31.49 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=67.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
++|+++-....|++.=.+++-+.|+++ +.++++++...+.+.++.. +.++-+-. .......
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~----p~I~~vi~---------~~~~~~~---- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN----PEIDKVII---------IDKKKKG---- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC----hHhhhhcc---------ccccccc----
Confidence 579999999999999999999999987 5999999999888876542 11221111 0000000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEE
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVN 140 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~ 140 (465)
........+...+++.++|+||.=....-...+ +...++|.-.
T Consensus 65 --------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l-~~~~~~~~r~ 107 (334)
T COG0859 65 --------LGLKERLALLRTLRKERYDAVIDLQGLLKSALL-ALLLGIPFRI 107 (334)
T ss_pred --------cchHHHHHHHHHhhccCCCEEEECcccHHHHHH-HHHhCCCccc
Confidence 000122456677777789999876544444555 6666776554
No 170
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=78.49 E-value=14 Score=34.42 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhC---CCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 037721 24 ISPFVQLSNKLSLH---GVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDL 100 (465)
Q Consensus 24 ~~p~l~La~~L~~r---Gh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (465)
.--+..|+++|.+. |++|+++.+...++-....-++...+++..+. + .......-|.++..+
T Consensus 13 a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~----~----~~yav~GTPaDCV~l------- 77 (261)
T PRK13931 13 APGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG----P----RRFAAEGSPADCVLA------- 77 (261)
T ss_pred CHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC----C----CeEEEcCchHHHHHH-------
Confidence 34466778888763 47999999887665443322334456665553 1 112222334333221
Q ss_pred hHHHHHHHHhhcCCcEEEEcCC---------Ccc----cccccccccCCeeEEEec
Q 037721 101 MQPQIKTLLSQLKPHFVFFDFT---------HYW----LPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 101 ~~~~l~~~l~~~~pD~vi~D~~---------~~~----~~~~~A~~~giP~v~~~~ 143 (465)
.+..++...+||+||+..- .++ |..- |...|||.+.++.
T Consensus 78 ---al~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~E-a~~~GiPsiA~S~ 129 (261)
T PRK13931 78 ---ALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAME-AALQGLPAIALSQ 129 (261)
T ss_pred ---HHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHH-HHhcCCCeEEEEe
Confidence 2233343357999997431 112 2233 5577999998865
No 171
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.84 E-value=9.4 Score=39.65 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=47.9
Q ss_pred chHhhhccccceeecc---cCCh-hhHHHHHHhCCceeeccccc-cchhhHHHHhhhhc--ceEEeeecC-CCCccCHHH
Q 037721 342 QQQLILRHESVGCYVC---HSGF-SSVTEAVISDCQLVLLPLKG-DQFLNSKLVAGDLK--AGVEVNRRD-HDGHFGKED 413 (465)
Q Consensus 342 pq~~vL~~~~~~~~It---HgG~-~s~~Eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G--~G~~l~~~~-~~~~~~~~~ 413 (465)
+..+++.-+++ ||. +=|+ -+++||+++|+|+|+-...+ .... ..+... | .|+.+..++ ..-..+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 35677878888 555 3454 49999999999999977532 2222 222222 2 577776322 111246678
Q ss_pred HHHHHHHhhc
Q 037721 414 IFKAVKTVMV 423 (465)
Q Consensus 414 l~~ai~~ll~ 423 (465)
|.++|.++++
T Consensus 542 La~~m~~~~~ 551 (590)
T cd03793 542 LTQYMYEFCQ 551 (590)
T ss_pred HHHHHHHHhC
Confidence 8888888886
No 172
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=76.55 E-value=2.5 Score=34.63 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=36.1
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcc
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSS 56 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~ 56 (465)
+||++...|+.+=.. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 478888888766666 999999999999999999999887776553
No 173
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.50 E-value=4.7 Score=32.37 Aligned_cols=38 Identities=18% Similarity=-0.012 Sum_probs=33.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
||++.+.++-.|...+.-++..|.+.|++|++....-.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~ 38 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVP 38 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 48899999999999999999999999999988765533
No 174
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=76.50 E-value=27 Score=32.55 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEc
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPL 68 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l 68 (465)
|..-+..|+++|...| +|+++.+...++-....-++...++...+
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~ 56 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEV 56 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEe
Confidence 4466788999998887 79999888766554332233344555554
No 175
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=76.07 E-value=52 Score=33.75 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=70.3
Q ss_pred eEEecccchHhh---hccccceeecc---cCChh-hHHHHHHhCC----ceeeccccccchhhHHHHhhhhcceEEeeec
Q 037721 335 VVHTGWVQQQLI---LRHESVGCYVC---HSGFS-SVTEAVISDC----QLVLLPLKGDQFLNSKLVAGDLKAGVEVNRR 403 (465)
Q Consensus 335 v~~~~~~pq~~v---L~~~~~~~~It---HgG~~-s~~Eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 403 (465)
+.+.+.+|+.++ ++.+++ ++. .-|+| +..|.++++. |+|.=-+.+ | .+.+ .-|+.++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~~l-~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AVEL-KGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hhhc-CCCEEECC-
Confidence 556677887664 445666 432 45888 4559999977 544432221 1 1333 55777877
Q ss_pred CCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 404 DHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 404 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
.+.++++++|.+.|+ ...++-++|.+++.+.++.. ....=++.+++.|+.
T Consensus 433 -----~d~~~~A~ai~~AL~----m~~~Er~~R~~~l~~~v~~~-d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 -----YDPVRMDETIYVALA----MPKAEQQARMREMFDAVNYY-DVQRWADEFLAAVSP 482 (487)
T ss_pred -----CCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHhhh
Confidence 489999999999996 22455677778888877755 344556777777764
No 176
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=74.33 E-value=22 Score=29.94 Aligned_cols=140 Identities=14% Similarity=0.209 Sum_probs=69.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhcccc
Q 037721 272 VIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHES 351 (465)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~ 351 (465)
.|-|-+||.+ +.+..+++...|+..|..+-+.+... ...|+.+. +|+.. +....
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa----------HR~p~~l~-----------~~~~~---~~~~~ 55 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA----------HRTPERLL-----------EFVKE---YEARG 55 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T----------TTSHHHHH-----------HHHHH---TTTTT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec----------cCCHHHHH-----------HHHHH---hccCC
Confidence 4666677755 66777888888888887664444332 23333322 11111 11112
Q ss_pred ceeecccCChhhHHHHH---HhCCceeeccccccchhhHH---HHhhh-hcceEEeeecCCCCccCHHHHHHHHHHhhcc
Q 037721 352 VGCYVCHSGFSSVTEAV---ISDCQLVLLPLKGDQFLNSK---LVAGD-LKAGVEVNRRDHDGHFGKEDIFKAVKTVMVD 424 (465)
Q Consensus 352 ~~~~ItHgG~~s~~Eal---~~GvP~l~~P~~~DQ~~na~---~v~~~-~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~ 424 (465)
++.||+=.|...-+-.+ ..-.|+|.+|....+..... -+.++ -|+++..-.- ++..++.-+...|-.+ .
T Consensus 56 ~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i--~~~~nAA~~A~~ILa~-~- 131 (150)
T PF00731_consen 56 ADVIIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI--NNGFNAALLAARILAL-K- 131 (150)
T ss_dssp ESEEEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS--THHHHHHHHHHHHHHT-T-
T ss_pred CEEEEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc--cCchHHHHHHHHHHhc-C-
Confidence 23388887764333332 23789999998766443222 12222 1444332210 0124555555555433 3
Q ss_pred cCCcchHHHHHHHHHHHHHHHc
Q 037721 425 VNKEPGASIRANQKWWREFLLN 446 (465)
Q Consensus 425 ~~~~~~~~~~~~a~~l~~~~~~ 446 (465)
+++++++.+..++++++
T Consensus 132 -----d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 132 -----DPELREKLRAYREKMKE 148 (150)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHc
Confidence 68888888888887753
No 177
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=74.14 E-value=9.4 Score=28.23 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=31.4
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFF 44 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~ 44 (465)
..-++++..+...|....-.+|+.|.+.|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46788899999999999999999999999998864
No 178
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=72.70 E-value=9.8 Score=37.44 Aligned_cols=112 Identities=5% Similarity=0.149 Sum_probs=64.5
Q ss_pred CceEEe-cccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCC-CCccC
Q 037721 333 RGVVHT-GWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDH-DGHFG 410 (465)
Q Consensus 333 ~nv~~~-~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~-~~~~~ 410 (465)
.++... ...+-.++|..+++ +||-- .+.+.|.+..++|+|.+....|+.... . |.-........ .-.-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCC
Confidence 355543 44567889999999 99987 458999999999999888766665322 2 22222110000 01247
Q ss_pred HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHc---CCchHHHHHHHH
Q 037721 411 KEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLN---GQIQDKFIADFV 458 (465)
Q Consensus 411 ~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~---~~~~~~~~~~~~ 458 (465)
.++|.++|+.++.+ +..++++.++..+++-. +.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIEN-----PDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHH-----HHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhC-----CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 89999999999873 44556666777777743 233344444443
No 179
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=72.14 E-value=18 Score=33.52 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=32.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
++|..-|+-|...-...+|..+++.|++|.++..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 34555689999999999999999999999999877653
No 180
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=71.31 E-value=17 Score=33.39 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=37.8
Q ss_pred CCcEEEEecC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 9 DQLHVVMFPW-FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 9 ~~~~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
+..|.+|+-. ++-|-..=-..||-.|++-++.|.++++++....
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 4577888877 6999999999999999999999999998876544
No 181
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=70.96 E-value=12 Score=28.26 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHH
Q 037721 27 FVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIK 106 (465)
Q Consensus 27 ~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (465)
++.+++.|.+.|+++. +++.....+++.| +.+..+- .....+ . +.+.
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~G-----i~~~~~~----~ki~~~------~----------------~~i~ 48 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREAG-----LPVKTLH----PKVHGG------I----------------LAIL 48 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHCC-----Ccceecc----CCCCCC------C----------------HHHH
Confidence 4689999999999983 4555677888777 6553221 001011 0 1366
Q ss_pred HHHhhcCCcEEEEcCCC---------cccccccccccCCeeE
Q 037721 107 TLLSQLKPHFVFFDFTH---------YWLPGLVGSQLGIKTV 139 (465)
Q Consensus 107 ~~l~~~~pD~vi~D~~~---------~~~~~~~A~~~giP~v 139 (465)
+.+++.+.|+||....- +..... |...+||++
T Consensus 49 ~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~-A~~~~Ip~~ 89 (90)
T smart00851 49 DLIKNGEIDLVINTLYPLGAQPHEDGKALRRA-AENIDIPGA 89 (90)
T ss_pred HHhcCCCeEEEEECCCcCcceeccCcHHHHHH-HHHcCCCee
Confidence 77888899999985421 011245 667788865
No 182
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=70.65 E-value=19 Score=36.64 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=47.9
Q ss_pred ccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHH
Q 037721 357 CHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRAN 436 (465)
Q Consensus 357 tHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~ 436 (465)
-|-|. ++.||+++|+|+++. ++..-+..++.. --|...+.. .-....+.+++.++.. |++++.+
T Consensus 376 E~FGi-v~IEAMa~glPvvAt----~~GGP~EiV~~~-~tG~l~dp~----~e~~~~~a~~~~kl~~------~p~l~~~ 439 (495)
T KOG0853|consen 376 EHFGI-VPIEAMACGLPVVAT----NNGGPAEIVVHG-VTGLLIDPG----QEAVAELADALLKLRR------DPELWAR 439 (495)
T ss_pred CCccc-eeHHHHhcCCCEEEe----cCCCceEEEEcC-CcceeeCCc----hHHHHHHHHHHHHHhc------CHHHHHH
Confidence 45555 789999999999984 455555566654 567666653 2344579999999999 8888765
Q ss_pred HHH
Q 037721 437 QKW 439 (465)
Q Consensus 437 a~~ 439 (465)
+.+
T Consensus 440 ~~~ 442 (495)
T KOG0853|consen 440 MGK 442 (495)
T ss_pred HHH
Confidence 543
No 183
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=70.63 E-value=6.9 Score=31.56 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=25.9
Q ss_pred cEEEEecCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 11 LHVVMFPWFAFG---HISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 11 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
+||+|+--|-.+ .-.-.+.|+.+..+|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 367777777333 234678899999999999999987754
No 184
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=70.34 E-value=50 Score=31.28 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=35.6
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
..|-+--.|+-|--.-+=.|++.|.++||+|-++.-++...+
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 456777789999999999999999999999999987665544
No 185
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.29 E-value=73 Score=29.87 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=63.1
Q ss_pred ceEEecccchH---hhhccccceeecccCChhhHHHHHHhCCcee--eccccccchhhHHHHhhhhcceEEeeecCCCCc
Q 037721 334 GVVHTGWVQQQ---LILRHESVGCYVCHSGFSSVTEAVISDCQLV--LLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGH 408 (465)
Q Consensus 334 nv~~~~~~pq~---~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l--~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (465)
.++...|+||+ ++|.-+++.++ =|--|+..|..+|+|.+ ++|. |....-..++.. +++.. .
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~V---RGEDSFVRAq~agkPflWHIYpQ--dentHl~KLeaF------ldky~---~ 304 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLV---RGEDSFVRAQLAGKPFLWHIYPQ--DENTHLAKLEAF------LDKYC---P 304 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccccee---ecchHHHHHHHcCCCcEEEecCC--ccccHHHHHHHH------HHHhC---C
Confidence 56666889875 58888887433 36679999999999987 4443 222223334433 22211 1
Q ss_pred cCHHHHHHHHHHhhcccC-Cc----------chHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 037721 409 FGKEDIFKAVKTVMVDVN-KE----------PGASIRANQKWWREFLLNGQIQDKFIADFVKD 460 (465)
Q Consensus 409 ~~~~~l~~ai~~ll~~~~-~~----------~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 460 (465)
.-+.+..+++++...+=+ ++ .-++.|+.|++++..+-..+.....+..|+++
T Consensus 305 ~lp~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek 367 (370)
T COG4394 305 FLPPNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEK 367 (370)
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 122233333333322111 11 02567888888888877666655555555554
No 186
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.99 E-value=14 Score=29.23 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=58.1
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 037721 22 GHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLM 101 (465)
Q Consensus 22 GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (465)
++-.-++.+++.|.+.|+++. +++...+.+.+.| +.+..+..+ . . .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~g-----i~~~~v~~~-----~-~---------------------~ 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEAG-----IPVEVVNKV-----S-E---------------------G 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHcC-----CeEEEEeec-----C-C---------------------C
Confidence 355678899999999999984 4666777888777 776666411 0 0 1
Q ss_pred HHHHHHHHhhcCCcEEEEcCC-------CcccccccccccCCeeEE
Q 037721 102 QPQIKTLLSQLKPHFVFFDFT-------HYWLPGLVGSQLGIKTVN 140 (465)
Q Consensus 102 ~~~l~~~l~~~~pD~vi~D~~-------~~~~~~~~A~~~giP~v~ 140 (465)
.+.+.+.+++.+.|+||.-.. .++.... |-.+|||++.
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~-Av~~~ipl~T 100 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRA-ALEYKVPYFT 100 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCccCccHHHHHHH-HHHhCCCEEe
Confidence 145677778889999998432 1223456 7888999985
No 187
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=69.40 E-value=56 Score=28.80 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=78.7
Q ss_pred CHHHHHH-HHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChh
Q 037721 284 TVDQIKE-LAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFS 362 (465)
Q Consensus 284 ~~~~~~~-i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~ 362 (465)
+.+.+.. +.+.+...+..+++..|. +..+...|.++.+++-+=+ ||++ .=.++|..
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLAGy----------MrIL~~~fl~~~~grIlNI-----------HPSL--LP~f~G~h 119 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLAGY----------MRILGPEFLSRFEGRILNI-----------HPSL--LPAFPGLH 119 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcch----------HHHcCHHHHHHhhcceEec-----------Cccc--ccCCCCch
Confidence 4555555 889999999998888664 6677777776554443333 8888 88999999
Q ss_pred hHHHHHHhCCceeeccccc--cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHH
Q 037721 363 SVTEAVISDCQLVLLPLKG--DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWW 440 (465)
Q Consensus 363 s~~Eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l 440 (465)
+..+|+.+|+..-++-.+. +.-+-+-.+.+. .+.+... -|.|.|.+.|.+.- -.-|-+..+.+
T Consensus 120 ~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~---~Vpv~~~-----Dt~etl~~RV~~~E-------h~lyp~~v~~~ 184 (200)
T COG0299 120 AHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA---AVPVLPG-----DTAETLEARVLEQE-------HRLYPLAVKLL 184 (200)
T ss_pred HHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE---eeeecCC-----CCHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 9999999999987766532 333333333322 2223333 38899988887633 24455544444
Q ss_pred HH
Q 037721 441 RE 442 (465)
Q Consensus 441 ~~ 442 (465)
.+
T Consensus 185 ~~ 186 (200)
T COG0299 185 AE 186 (200)
T ss_pred Hh
Confidence 43
No 188
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=69.28 E-value=9.5 Score=30.51 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=33.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+|+++.+.+..-|-.-+..|+..|.++||+|.++-...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 47899999999999999999999999999999885443
No 189
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=68.70 E-value=10 Score=30.10 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhH
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQ 102 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (465)
+=.-++.+|+.|...|+++ ++++.....+++.| +.+..+. ..+.+ ..
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~G-----i~~~~v~-----~~~~~---------------------g~ 56 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADAG-----IPVRAVS-----KRHED---------------------GE 56 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHcC-----CceEEEE-----ecCCC---------------------CC
Confidence 4456789999999999988 35667777888877 7776664 11111 11
Q ss_pred HHHHHHHhh-cCCcEEEEcC--CC--------cccccccccccCCeeEEE
Q 037721 103 PQIKTLLSQ-LKPHFVFFDF--TH--------YWLPGLVGSQLGIKTVNF 141 (465)
Q Consensus 103 ~~l~~~l~~-~~pD~vi~D~--~~--------~~~~~~~A~~~giP~v~~ 141 (465)
+.+.+.+++ .+.|+||.-. .. +..... |...+||++.-
T Consensus 57 ~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~-A~~~~Ip~~T~ 105 (112)
T cd00532 57 PTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRL-ARLYKIPVTTP 105 (112)
T ss_pred cHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHH-HHHcCCCEEEC
Confidence 456677778 8999999732 11 111245 77889998863
No 190
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=1.2e+02 Score=29.39 Aligned_cols=128 Identities=12% Similarity=-0.011 Sum_probs=79.7
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCc
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMT 87 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (465)
.++.|++++-.|-.||--++.-=|..|++.|.+|.+++..+....-+-.. -++++++.++.+ + ..+..+
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~--hprI~ih~m~~l-----~----~~~~~p 78 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN--HPRIRIHGMPNL-----P----FLQGGP 78 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc--CCceEEEeCCCC-----c----ccCCCc
Confidence 45778999999999999999999999999999999998776543322111 357999999722 1 111122
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcC-CCccccccccc----ccCCeeEEEecchHHH
Q 037721 88 PHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDF-THYWLPGLVGS----QLGIKTVNFSVFSAIS 148 (465)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~-~~~~~~~~~A~----~~giP~v~~~~~~~~~ 148 (465)
...+ .....+-+....+..++...++|.++.-. -+.....+ |. ..|...++=+....+.
T Consensus 79 ~~~~-l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv-~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 RVLF-LPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIV-CVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhh-hHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHH-HHHHHHHhcceEEEEehhhHHH
Confidence 1111 22222222334455556666889877654 33333333 33 4477777777766554
No 191
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=67.64 E-value=12 Score=34.39 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=52.0
Q ss_pred CCeEEEEEeCCccc---CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccc---
Q 037721 269 PKSVIYCSFGSETF---LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQ--- 342 (465)
Q Consensus 269 ~~~~v~vs~GS~~~---~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p--- 342 (465)
+++.|.+..|+... .+.+.+.++++.+...++++++..+.. + .....-+..........+.+.+-..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-E------QEKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-H------HHHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-H------HHHHHHHHHHHhcccceEeecCCCCHHH
Confidence 35577777776542 567899999999987776655444332 1 0001101111111111233323222
Q ss_pred hHhhhccccceeecccCChhhHHHHHHhCCceeec
Q 037721 343 QQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLL 377 (465)
Q Consensus 343 q~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~ 377 (465)
..++++++++ ||+. -.|.++=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 3568888888 8887 456888899999999997
No 192
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=66.76 E-value=25 Score=32.12 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=22.1
Q ss_pred CcEE-EEcCCC-cccccccccccCCeeEEEecchHH
Q 037721 114 PHFV-FFDFTH-YWLPGLVGSQLGIKTVNFSVFSAI 147 (465)
Q Consensus 114 pD~v-i~D~~~-~~~~~~~A~~~giP~v~~~~~~~~ 147 (465)
||++ |.|... --|..= |..+|||+|.+.-+.+-
T Consensus 157 Pd~l~ViDp~~e~iAv~E-A~klgIPVvAlvDTn~d 191 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKE-ANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCEEEEeCCcHhHHHHHH-HHHcCCCEEEEecCCCC
Confidence 9985 566632 224556 88999999998664433
No 193
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=66.36 E-value=1.3e+02 Score=29.19 Aligned_cols=82 Identities=9% Similarity=0.036 Sum_probs=60.0
Q ss_pred CceE-Eecccc---hHhhhccccceeeccc--CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCC
Q 037721 333 RGVV-HTGWVQ---QQLILRHESVGCYVCH--SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHD 406 (465)
Q Consensus 333 ~nv~-~~~~~p---q~~vL~~~~~~~~ItH--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 406 (465)
.++. +++++| +.++|..++++.|++. =|.|++.-+++.|+|++.- .+-.--+-+.+. |+-+.-..+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~-~ipVlf~~d--- 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQ-GIPVLFYGD--- 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhC-CCeEEeccc---
Confidence 3554 456777 6789999999888775 5899999999999999873 333333445555 777665544
Q ss_pred CccCHHHHHHHHHHhhc
Q 037721 407 GHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 407 ~~~~~~~l~~ai~~ll~ 423 (465)
.++...|+++=+.+..
T Consensus 317 -~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 -ELDEALVREAQRQLAN 332 (360)
T ss_pred -cCCHHHHHHHHHHHhh
Confidence 4999999988877664
No 194
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=65.50 E-value=25 Score=35.58 Aligned_cols=93 Identities=11% Similarity=0.086 Sum_probs=62.0
Q ss_pred CceE-Eecccc--hHhhhccccceeecccCC--hhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCC
Q 037721 333 RGVV-HTGWVQ--QQLILRHESVGCYVCHSG--FSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDG 407 (465)
Q Consensus 333 ~nv~-~~~~~p--q~~vL~~~~~~~~ItHgG--~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 407 (465)
.|++ ..++.+ -.+++..+++=+-|.||+ ..++.||+.+|+|++.+=..... ...+.. |-.++.
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~----g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS----ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC----CceecC-----
Confidence 4544 445566 357999999977899977 47999999999999996532211 111111 333443
Q ss_pred ccCHHHHHHHHHHhhcccCCcchH-HHHHHHHHHHHHH
Q 037721 408 HFGKEDIFKAVKTVMVDVNKEPGA-SIRANQKWWREFL 444 (465)
Q Consensus 408 ~~~~~~l~~ai~~ll~~~~~~~~~-~~~~~a~~l~~~~ 444 (465)
-+.+++.++|.++|. ++ .++++...-++.+
T Consensus 396 -~~~~~m~~~i~~lL~------d~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 396 -NEVDQLISKLKDLLN------DPNQFRELLEQQREHA 426 (438)
T ss_pred -CCHHHHHHHHHHHhc------CHHHHHHHHHHHHHHh
Confidence 378999999999998 55 5565555544443
No 195
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=64.91 E-value=24 Score=30.00 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=27.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEE
Q 037721 272 VIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVL 306 (465)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~ 306 (465)
.+|+++||.......+++..+.++...+.--++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999887777888999999887664334443
No 196
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=62.62 E-value=18 Score=31.12 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhcCCcEEEEcCCCcccccc--c--cccc-CCeeEEEec
Q 037721 101 MQPQIKTLLSQLKPHFVFFDFTHYWLPGL--V--GSQL-GIKTVNFSV 143 (465)
Q Consensus 101 ~~~~l~~~l~~~~pD~vi~D~~~~~~~~~--~--A~~~-giP~v~~~~ 143 (465)
..+.+.++|++.+||+||+...+.....+ + ...+ ++|++.+.+
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 45688999999999999999865433312 0 1223 577765533
No 197
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=62.38 E-value=27 Score=30.66 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=49.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCC-hhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGN-IPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~-~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
.++-+-..+.|-+.-...|+++|.++ |+.|.+-++... .+.+.+.. ++.+...-+| -+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~--~~~v~~~~~P--------~D--------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL--PDRVDVQYLP--------LD--------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG---GGG-SEEE-----------S---------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC--CCCeEEEEeC--------cc---------
Confidence 45556667899999999999999987 888888776433 33343321 1123322233 11
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCccc--ccccccccCCeeEEEec
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWL--PGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~--~~~~A~~~giP~v~~~~ 143 (465)
........++.++||++|.--...|- ... |++.|||++.+..
T Consensus 83 ------------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~-a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------------FPWAVRRFLDHWRPDLLIWVETELWPNLLRE-AKRRGIPVVLVNA 126 (186)
T ss_dssp ------------SHHHHHHHHHHH--SEEEEES----HHHHHH------S-EEEEEE
T ss_pred ------------CHHHHHHHHHHhCCCEEEEEccccCHHHHHH-HhhcCCCEEEEee
Confidence 11234566677799986654435553 356 8899999998744
No 198
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=61.63 E-value=98 Score=27.52 Aligned_cols=152 Identities=12% Similarity=0.005 Sum_probs=79.4
Q ss_pred ccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccc
Q 037721 263 WLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQ 342 (465)
Q Consensus 263 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p 342 (465)
|++-.+ +.++.|..|.++ ...+..|...|.++.++-. . ..+.+........+.......
T Consensus 5 ~l~l~~-k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~------------~~~~l~~l~~~~~i~~~~~~~ 63 (202)
T PRK06718 5 MIDLSN-KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E------------LTENLVKLVEEGKIRWKQKEF 63 (202)
T ss_pred EEEcCC-CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C------------CCHHHHHHHhCCCEEEEecCC
Confidence 344333 567888777665 2455556667777665532 1 111111111112343333334
Q ss_pred hHhhhccccceeecccCChhhHHHHHH----hCCceeeccccccchhhH-----HHHhhhhcceEEeeecCCCCccCHHH
Q 037721 343 QQLILRHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNS-----KLVAGDLKAGVEVNRRDHDGHFGKED 413 (465)
Q Consensus 343 q~~vL~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~~~~~~~~~ 413 (465)
+..-+..+++ +|.--+.-.+.+.++ .++++-+ .|.+..+ ..+.+- ++-+.+...... -.-+..
T Consensus 64 ~~~~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~s-P~la~~ 135 (202)
T PRK06718 64 EPSDIVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGAS-PKLAKK 135 (202)
T ss_pred ChhhcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCC-hHHHHH
Confidence 4555667777 888777666666554 4555433 3443332 233333 444444433211 133466
Q ss_pred HHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC
Q 037721 414 IFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG 447 (465)
Q Consensus 414 l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 447 (465)
|++.|++++. ++-..+-+.+.++++.+++.
T Consensus 136 lr~~ie~~~~----~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 136 IRDELEALYD----ESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHcc----hhHHHHHHHHHHHHHHHHHh
Confidence 8888887763 12456777778888887764
No 199
>PRK08760 replicative DNA helicase; Provisional
Probab=61.18 E-value=37 Score=34.78 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=33.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCCChhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSL-HGVKVSFFSAPGNIPR 52 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~ 52 (465)
+++...|+.|-..-.+.+|...+. .|+.|.|++.+-....
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 566777899999999999998874 5999999998866654
No 200
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=61.13 E-value=1.1e+02 Score=28.38 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=47.4
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceE----EecccchHhhhccccceeec-ccCChhhHH
Q 037721 291 LAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVV----HTGWVQQQLILRHESVGCYV-CHSGFSSVT 365 (465)
Q Consensus 291 i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~----~~~~~pq~~vL~~~~~~~~I-tHgG~~s~~ 365 (465)
+.+.+++.|.+|+++.+....+...+-...+++. ...++ =+++=|+.+.|..++. +| |--..|...
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s-------~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~s 259 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDTVKSILKNNLNS-------SPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCS 259 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHHHHHHHHhcccc-------CceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhH
Confidence 4456778899999998765322100000111111 11111 1255689999988876 55 555568889
Q ss_pred HHHHhCCceeec
Q 037721 366 EAVISDCQLVLL 377 (465)
Q Consensus 366 Eal~~GvP~l~~ 377 (465)
||.+.|+|+.++
T Consensus 260 EAasTgkPv~~~ 271 (329)
T COG3660 260 EAASTGKPVFIL 271 (329)
T ss_pred HHhccCCCeEEE
Confidence 999999999663
No 201
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.60 E-value=20 Score=32.72 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=33.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
-+++.-.++.|-..-..+++....++|..|.|++..+..+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS 67 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence 35666777999999999998888889999999998876543
No 202
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=59.44 E-value=15 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=25.0
Q ss_pred EEEEecCCCccCHH------------HHHHHHHHHHhCCCEEEEEeCCC
Q 037721 12 HVVMFPWFAFGHIS------------PFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~------------p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+|++.+.|+.=++. .-..||+++..||++|+++..+.
T Consensus 5 ~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 5 KVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred EEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 55555555544443 35789999999999999999884
No 203
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=59.15 E-value=27 Score=37.97 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=64.9
Q ss_pred EEecccchHh---hhccccceeeccc---CCh-hhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCc
Q 037721 336 VHTGWVQQQL---ILRHESVGCYVCH---SGF-SSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGH 408 (465)
Q Consensus 336 ~~~~~~pq~~---vL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 408 (465)
.+.+++++.+ +++.+++ |+.- -|+ .++.|++++|+|-...|+..+--.-+. +. .-|+.++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~l-~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---EL-AEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---Hh-CcCeEECC------
Confidence 4556777665 5556676 6543 354 588999999765222222111111111 22 23677776
Q ss_pred cCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 409 FGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 409 ~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
.+.++++++|.++|.. ..++.+++.+++.+.+++ -+...-++.+++.+++
T Consensus 413 ~d~~~la~ai~~~l~~----~~~e~~~r~~~~~~~v~~-~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 NDIEGIAAAIKRALEM----PEEEQRERMQAMQERLRR-YDVHKWASDFLDELRE 462 (726)
T ss_pred CCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence 4899999999999861 124556666666666653 3455556766666654
No 204
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=58.05 E-value=25 Score=31.24 Aligned_cols=45 Identities=16% Similarity=-0.181 Sum_probs=38.8
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
.++.+|++.+.++-.|-....-++..|..+|++|+++...-..+.
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~ 126 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDT 126 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHH
Confidence 345799999999999999999999999999999999987655443
No 205
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=57.86 E-value=23 Score=31.49 Aligned_cols=41 Identities=15% Similarity=-0.101 Sum_probs=36.3
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
++.+|++.+.++-.|-....-++..|.+.|++|+++...-.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p 121 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVP 121 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 46799999999999999999999999999999998875543
No 206
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=57.86 E-value=31 Score=32.06 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChh-hhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHHHH
Q 037721 27 FVQLSNKLSLHGVKVSFFSAPGNIP-RIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQI 105 (465)
Q Consensus 27 ~l~La~~L~~rGh~V~~~~~~~~~~-~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (465)
-..|++.|.++||+|+..+...... .+...| ...+ .. +.+ -...+
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g----~~~v-~~-----g~l------------------------~~~~l 57 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ----ALTV-HT-----GAL------------------------DPQEL 57 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccC----CceE-EE-----CCC------------------------CHHHH
Confidence 6789999999999999887665432 233221 0111 01 011 01236
Q ss_pred HHHHhhcCCcEEEEcCCCcc-------cccccccccCCeeEEE
Q 037721 106 KTLLSQLKPHFVFFDFTHYW-------LPGLVGSQLGIKTVNF 141 (465)
Q Consensus 106 ~~~l~~~~pD~vi~D~~~~~-------~~~~~A~~~giP~v~~ 141 (465)
.+++++.++|+||--. .+. +..+ |+++|||++-+
T Consensus 58 ~~~l~~~~i~~VIDAt-HPfA~~is~~a~~a-~~~~~ipylR~ 98 (256)
T TIGR00715 58 REFLKRHSIDILVDAT-HPFAAQITTNATAV-CKELGIPYVRF 98 (256)
T ss_pred HHHHHhcCCCEEEEcC-CHHHHHHHHHHHHH-HHHhCCcEEEE
Confidence 6778888999877544 344 3467 89999999986
No 207
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=57.58 E-value=1.4e+02 Score=26.43 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=63.9
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh------hhhhcccCCCCCeeEEEccCCCCCCCCCCCC
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI------PRIKSSLNLTPMADIIPLQIPHVDGLPPGLD 81 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~------~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 81 (465)
+++-.|.++...+.|-....+.+|-..+.+|++|.++-.-... ..+++ .+++++.... .++.. .
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~----l~~v~~~~~g----~~~~~--~ 89 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF----GGGVEFHVMG----TGFTW--E 89 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc----CCCcEEEECC----CCCcc--c
Confidence 3566789999999999999999999999999999998532211 11222 1357777775 22111 1
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 82 STSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
. ..... .............+.+.+...|+||-|-..
T Consensus 90 ~--~~~~e----~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 90 T--QDRER----DIAAAREGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred C--CCcHH----HHHHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 1 11111 122233344566777778889999999854
No 208
>PRK10867 signal recognition particle protein; Provisional
Probab=56.62 E-value=72 Score=32.23 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=35.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCCChhh
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLH-GVKVSFFSAPGNIPR 52 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~ 52 (465)
.-|+++..+|.|-..-...||..|+.+ |+.|.+++.+.++..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 345666667999999999999999998 999999998876654
No 209
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=56.60 E-value=43 Score=31.80 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=36.3
Q ss_pred cccceeecccCChhhHHHHHHh----CCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 349 HESVGCYVCHSGFSSVTEAVIS----DCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++ +|+-||-||+++++.. ++|++.+-. - .+|...+ .+.+++.++|+++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G-~lGFL~~-------~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------G-RLGFITD-------IPLDDMQETLPPMLA 118 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------C-Ccccccc-------CCHHHHHHHHHHHHc
Confidence 4566 9999999999999774 678777541 0 2232221 577888888888876
No 210
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=56.38 E-value=17 Score=32.17 Aligned_cols=45 Identities=9% Similarity=-0.152 Sum_probs=33.5
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhh
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIK 54 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~ 54 (465)
..||++--.|+.|=..-...+++.|.++||+|+++.++...+.+.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 346777666654444437999999999999999999887665543
No 211
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.19 E-value=1e+02 Score=27.84 Aligned_cols=88 Identities=9% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh-hhhhccc----CC-----CCCeeEEEccCCCCCCCCCCCCCCCCCch
Q 037721 19 FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI-PRIKSSL----NL-----TPMADIIPLQIPHVDGLPPGLDSTSEMTP 88 (465)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~-~~i~~~g----~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (465)
-+.|-..-..+++.-+...||.|++++++... +++.++. ++ .+.+.|.++.. ++. .
T Consensus 37 ~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~---~~~--~--------- 102 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL---EPV--N--------- 102 (235)
T ss_pred CCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecc---ccc--c---------
Confidence 37888889999999999999999999988543 3444432 11 23344544420 100 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCc
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHY 124 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~ 124 (465)
+.....+...+.+.+.++.++-|++|.|.++.
T Consensus 103 ----~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~ 134 (235)
T COG2874 103 ----WGRRSARKLLDLLLEFIKRWEKDVIIIDSLSA 134 (235)
T ss_pred ----cChHHHHHHHHHHHhhHHhhcCCEEEEecccH
Confidence 11222333445666777788899999999764
No 212
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=55.95 E-value=1.4e+02 Score=26.08 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=33.9
Q ss_pred CCceeeccc----cccc---hhhHHHHhhhhcceEEeeecC--------CCCccCHHHHHHHHHHhhc
Q 037721 371 DCQLVLLPL----KGDQ---FLNSKLVAGDLKAGVEVNRRD--------HDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 371 GvP~l~~P~----~~DQ---~~na~~v~~~~G~G~~l~~~~--------~~~~~~~~~l~~ai~~ll~ 423 (465)
++|++++|- ..+. ..|..++.+. |+=+.-+... ..+-.+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 899999995 3333 4567777776 8766555421 1334567788777777664
No 213
>PRK07773 replicative DNA helicase; Validated
Probab=55.95 E-value=51 Score=36.81 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=33.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSL-HGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~i 53 (465)
+++...|+.|-..-.+.+|...+. .|..|.|++.+.....+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 566777899999999999999875 48899999988766553
No 214
>PRK09165 replicative DNA helicase; Provisional
Probab=55.86 E-value=49 Score=34.16 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=33.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC---------------CCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLH---------------GVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~V~~~~~~~~~~~i 53 (465)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667778999999999999888753 7899999988766543
No 215
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=55.34 E-value=24 Score=29.37 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=38.5
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
.++||++.+.+.-||-...--+++.|+..|.+|.+...-...+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 68899999999999999999999999999999999765544433
No 216
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=54.19 E-value=23 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=31.6
Q ss_pred EEEEecCC--CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 12 HVVMFPWF--AFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 12 ~il~~~~~--~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
+|++++.+ +-|-..-.-+|+..|+.+|++|.++-.+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 57777775 8999999999999999999999998655
No 217
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=53.86 E-value=52 Score=33.13 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=53.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC----hhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN----IPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEM 86 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~----~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (465)
.|+.+...+.. .+.+++.|.+-|-+|..+++... .+..... +. .+........
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~-----------~~-----~~~~~v~~~~-- 342 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRW-----------LE-----MLGVEVKYRA-- 342 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHH-----------HH-----hcCCCceecc--
Confidence 47777777755 88889999999999998866631 1111110 00 0000000000
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEE
Q 037721 87 TPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNF 141 (465)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~ 141 (465)
.+ .+.+ +.+++.+||++|.... ...+ |+++|||.+.+
T Consensus 343 --dl-----------~~~~-~~l~~~~pDllig~s~---~~~~-A~k~gIP~vr~ 379 (422)
T TIGR02015 343 --SL-----------EDDM-EAVLEFEPDLAIGTTP---LVQF-AKEHGIPALYF 379 (422)
T ss_pred --CH-----------HHHH-HHHhhCCCCEEEcCCc---chHH-HHHcCCCEEEe
Confidence 01 0111 4557789999998852 4557 99999999875
No 218
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=53.56 E-value=1.5e+02 Score=28.18 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHH
Q 037721 290 ELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVI 369 (465)
Q Consensus 290 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~ 369 (465)
.+++.++..+..+++..+. ...+|+.|....+.+-+=+ |+++ .=...|.+.+..|+.
T Consensus 160 ~~~~~l~~~~~Dlivlagy----------m~il~~~~l~~~~~~iiNi-----------HpSl--LP~f~G~~~~~~ai~ 216 (289)
T PRK13010 160 QILDLIETSGAELVVLARY----------MQVLSDDLSRKLSGRAINI-----------HHSF--LPGFKGARPYHQAHA 216 (289)
T ss_pred HHHHHHHHhCCCEEEEehh----------hhhCCHHHHhhccCCceee-----------Cccc--CCCCCCCCHHHHHHH
Confidence 4666777778888888765 4566666665443332222 4444 444568999999999
Q ss_pred hCCceeecccc--ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHH
Q 037721 370 SDCQLVLLPLK--GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWR 441 (465)
Q Consensus 370 ~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~ 441 (465)
+|+...++=.+ -+..+.+..+.+. -+.+... -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 217 ~G~k~tG~TvH~v~~~lD~GpII~Q~---~v~V~~~-----dt~e~L~~r~~~~E~-------~~l~~ai~~~~ 275 (289)
T PRK13010 217 RGVKLIGATAHFVTDDLDEGPIIEQD---VERVDHS-----YSPEDLVAKGRDVEC-------LTLARAVKAFI 275 (289)
T ss_pred cCCCeEEEEEEEEcCCCCCCCceEEE---EEEcCCC-----CCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 99999887754 3555666666554 2333343 488999998877553 45555555443
No 219
>PRK06321 replicative DNA helicase; Provisional
Probab=53.12 E-value=68 Score=32.82 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=33.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCCChhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLS-LHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~ 52 (465)
+++...|+.|-..-.+.+|...+ +.|..|.|++.+-....
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 56677889999999999999987 45999999988866544
No 220
>PRK06849 hypothetical protein; Provisional
Probab=52.91 E-value=57 Score=32.36 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=27.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+++|++.... ..-.+.+++.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5677776432 3358999999999999999997764
No 221
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=52.59 E-value=1.4e+02 Score=25.15 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=80.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhcccc
Q 037721 272 VIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHES 351 (465)
Q Consensus 272 ~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~ 351 (465)
.|-|-+||.+ +.+..+..++.|+..++.+-..+-. ...-|+.+.+. +-. .....
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvS----------AHRTPe~m~~y-----------a~~---a~~~g 57 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVS----------AHRTPEKMFEY-----------AEE---AEERG 57 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEe----------ccCCHHHHHHH-----------HHH---HHHCC
Confidence 4667788865 6677788888888888887433322 22344422211 100 11223
Q ss_pred ceeecccCChh---hHHHHHHhCCceeeccccc---cchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhccc
Q 037721 352 VGCYVCHSGFS---SVTEAVISDCQLVLLPLKG---DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDV 425 (465)
Q Consensus 352 ~~~~ItHgG~~---s~~Eal~~GvP~l~~P~~~---DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~ 425 (465)
++.+|.-.|.- .=+-|...=+|+|.+|... +--+---.++++ --|+-+-.-.-++..++.-+...|-.+ .
T Consensus 58 ~~viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQM-P~GvPVaTvaIg~a~NAallAa~ILa~-~-- 133 (162)
T COG0041 58 VKVIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQM-PAGVPVATVAIGNAANAALLAAQILAI-K-- 133 (162)
T ss_pred CeEEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcC-CCCCeeEEEeecchhhHHHHHHHHHcC-C--
Confidence 33367666532 1233445579999999852 333444455665 666644321101134566565555433 3
Q ss_pred CCcchHHHHHHHHHHHHHHHc
Q 037721 426 NKEPGASIRANQKWWREFLLN 446 (465)
Q Consensus 426 ~~~~~~~~~~~a~~l~~~~~~ 446 (465)
|++++++.+++++..++
T Consensus 134 ----d~~l~~kl~~~r~~~~~ 150 (162)
T COG0041 134 ----DPELAEKLAEFREAQTE 150 (162)
T ss_pred ----CHHHHHHHHHHHHHHHH
Confidence 79999999999988864
No 222
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=52.59 E-value=20 Score=31.50 Aligned_cols=41 Identities=10% Similarity=-0.051 Sum_probs=33.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
||++--.|+.|=+.-.+.+.++|.+.|++|+++.++.....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~ 42 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTT 42 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHH
Confidence 67777777777666667999999999999999998876543
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.57 E-value=1.5e+02 Score=25.32 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=58.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEe---CCCCh---hhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFS---APGNI---PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSE 85 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~---~~~~~---~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (465)
-|.+.+.++.|-.+..+.+|-..+.+|++|.|+- ..... ..+++. +++.+.... .+..- .. .+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g----~~~~~--~~-~~ 72 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMG----RGFFW--TT-EN 72 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECC----CCCcc--CC-CC
Confidence 4677888899999999999999999999999953 22111 112222 357777765 22111 11 11
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 86 MTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
... .............+.++....|+||-|-..
T Consensus 73 -~~~----~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~ 105 (159)
T cd00561 73 -DEE----DIAAAAEGWAFAKEAIASGEYDLVILDEIN 105 (159)
T ss_pred -hHH----HHHHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 111 112222344566677777789999999854
No 224
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=52.53 E-value=1.5e+02 Score=25.32 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=21.1
Q ss_pred eecccCCh------hhHHHHHHhCCceeecc
Q 037721 354 CYVCHSGF------SSVTEAVISDCQLVLLP 378 (465)
Q Consensus 354 ~~ItHgG~------~s~~Eal~~GvP~l~~P 378 (465)
.+++|+|- +.+.+|...++|||++.
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 38888874 47899999999999986
No 225
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=52.51 E-value=18 Score=31.69 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=34.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
||++.-.++.|=.. ...+.+.|+++|++|.++.++.....+..
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 67777777666554 89999999999999999999987777653
No 226
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=52.12 E-value=89 Score=27.78 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCC----ChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHG--VKVSFFSAPG----NIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTS 84 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~----~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (465)
+||+|+..+..+-+. +|.+++.+.+ ++|.++.+.. ..+...+.| +.+..++ ...+.....
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~g-----Ip~~~~~---~~~~~~~~~--- 67 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAG-----IPTFVLD---HKDFPSREA--- 67 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcC-----CCEEEEC---ccccCchhH---
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEE-cCCCcccccccccccCCeeEEEecc
Q 037721 85 EMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFF-DFTHYWLPGLVGSQLGIKTVNFSVF 144 (465)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~-D~~~~~~~~~~A~~~giP~v~~~~~ 144 (465)
....+.+++++.+||++|+ .+...-...+ -+.....++.++++
T Consensus 68 ----------------~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~-l~~~~~~~iNiHps 111 (200)
T PRK05647 68 ----------------FDAALVEALDAYQPDLVVLAGFMRILGPTF-VSAYEGRIINIHPS 111 (200)
T ss_pred ----------------hHHHHHHHHHHhCcCEEEhHHhhhhCCHHH-HhhccCCEEEEeCc
No 227
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=51.46 E-value=1.9e+02 Score=27.35 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHH
Q 037721 290 ELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVI 369 (465)
Q Consensus 290 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~ 369 (465)
.+++.++..+..+++..+. ...+|+.|.+..+.+-+=+ |+++ .=.+.|.+.+..|+.
T Consensus 156 ~~~~~l~~~~~Dlivlagy----------~~il~~~~l~~~~~~iiNi-----------HpSL--LP~~rG~~~~~~ai~ 212 (286)
T PRK13011 156 QVLDVVEESGAELVVLARY----------MQVLSPELCRKLAGRAINI-----------HHSF--LPGFKGAKPYHQAYE 212 (286)
T ss_pred HHHHHHHHhCcCEEEEeCh----------hhhCCHHHHhhccCCeEEe-----------cccc--CCCCCCCcHHHHHHH
Confidence 4666677777888888765 4567777765443332222 5555 555679999999999
Q ss_pred hCCceeecccc--ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH
Q 037721 370 SDCQLVLLPLK--GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWRE 442 (465)
Q Consensus 370 ~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~ 442 (465)
+|+...++=++ .+..+-+..+.+. .+.+... -|.++|.+.+.++- -.-|-+..+.+.+
T Consensus 213 ~G~~~tG~TvH~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~r~~~~E-------~~~~~~ai~~~~~ 272 (286)
T PRK13011 213 RGVKLIGATAHYVTDDLDEGPIIEQD---VERVDHA-----YSPEDLVAKGRDVE-------CLTLARAVKAHIE 272 (286)
T ss_pred CCCCeEEEEEEEEcCCCcCCCcEEEE---EEEcCCC-----CCHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 99999887754 2444555555444 3344444 49999999988743 3556655555543
No 228
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=51.42 E-value=64 Score=31.87 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=34.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
+++.--|+.|-..-+++++..+++.|..|.|++.++..+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45555679999999999999999999999999888765544
No 229
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=51.25 E-value=25 Score=30.46 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=45.0
Q ss_pred cccceeecccCChhhHHHHHHhCCceeeccccc-----------------------cchhhHHHHhhhhcceEEeeecCC
Q 037721 349 HESVGCYVCHSGFSSVTEAVISDCQLVLLPLKG-----------------------DQFLNSKLVAGDLKAGVEVNRRDH 405 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~-----------------------DQ~~na~~v~~~~G~G~~l~~~~~ 405 (465)
+..+..+|++||...+..... ++|+|-+|..+ +...+...+.+.+|+-+..-.-
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~-- 108 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY-- 108 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE--
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE--
Confidence 344455999999999999988 99999998732 2344567777766776666654
Q ss_pred CCccCHHHHHHHHHHhhc
Q 037721 406 DGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 406 ~~~~~~~~l~~ai~~ll~ 423 (465)
-+.+++...|.++..
T Consensus 109 ---~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 109 ---DSEEEIEAAIKQAKA 123 (176)
T ss_dssp ---SSHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 478888888887754
No 230
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=50.67 E-value=1.5e+02 Score=28.39 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred Eecccc---hHhhhccccceeeccc--CChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCH
Q 037721 337 HTGWVQ---QQLILRHESVGCYVCH--SGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGK 411 (465)
Q Consensus 337 ~~~~~p---q~~vL~~~~~~~~ItH--gG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 411 (465)
+++++| +.++|++++++.|+++ =|.|+++-.++.|+|+++-- +-+.|.. +.+. |+-+..+.+ .++.
T Consensus 211 L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e~-gv~Vlf~~d----~L~~ 281 (322)
T PRK02797 211 LTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTEQ-GLPVLFTGD----DLDE 281 (322)
T ss_pred hhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHhC-CCeEEecCC----cccH
Confidence 445655 7789999999989886 48999999999999999842 3344444 3334 777655544 4787
Q ss_pred HHHHHHHHHh
Q 037721 412 EDIFKAVKTV 421 (465)
Q Consensus 412 ~~l~~ai~~l 421 (465)
..+.++=+++
T Consensus 282 ~~v~e~~rql 291 (322)
T PRK02797 282 DIVREAQRQL 291 (322)
T ss_pred HHHHHHHHHH
Confidence 7777764443
No 231
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.44 E-value=33 Score=27.65 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=34.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
||++.+.++-.|-.-..-++..|+..|++|++.......
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~ 39 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTP 39 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 588999999999999999999999999999999875443
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=50.30 E-value=17 Score=33.69 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=39.6
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
..-++|.-.||.|-..=..+||.+|.++|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 3468888888999999999999999988999999999977766654
No 233
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=49.80 E-value=1.5e+02 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=32.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
+++.-.|+.|-..-+++++...+++|..|.|++.+...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 45566679999999999999988899999999988544
No 234
>PRK05636 replicative DNA helicase; Provisional
Probab=48.97 E-value=73 Score=32.95 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=32.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCCChhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLS-LHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~ 52 (465)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+-....
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 56677789999999999998876 46889999988766544
No 235
>PLN02470 acetolactate synthase
Probab=48.57 E-value=93 Score=32.88 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=50.5
Q ss_pred EeCCcccCCH--HHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEeccc-chHhh------
Q 037721 276 SFGSETFLTV--DQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWV-QQQLI------ 346 (465)
Q Consensus 276 s~GS~~~~~~--~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~-pq~~v------ 346 (465)
+|||....+. .--+.+++.|+..|++.++-+.+..... +-+.+. ...++.+..-. .+.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~--------l~dal~---~~~~i~~i~~rhE~~A~~~Adgy 70 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME--------IHQALT---RSNCIRNVLCRHEQGEVFAAEGY 70 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH--------HHHHHh---ccCCceEEEeccHHHHHHHHHHH
Confidence 4666554332 2245688888888998888876653211 101111 11122221111 11111
Q ss_pred -hccccceeecccCCh------hhHHHHHHhCCceeecc
Q 037721 347 -LRHESVGCYVCHSGF------SSVTEAVISDCQLVLLP 378 (465)
Q Consensus 347 -L~~~~~~~~ItHgG~------~s~~Eal~~GvP~l~~P 378 (465)
..+-..+++++|.|- +.+.+|.+.++|||++.
T Consensus 71 ar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 71 AKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 111134458888884 48899999999999985
No 236
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=48.13 E-value=1.3e+02 Score=28.33 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhcCCcEEEE
Q 037721 101 MQPQIKTLLSQLKPHFVFF 119 (465)
Q Consensus 101 ~~~~l~~~l~~~~pD~vi~ 119 (465)
....|.++|++.+||+||+
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4578888999999999886
No 237
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=47.86 E-value=46 Score=29.98 Aligned_cols=43 Identities=16% Similarity=-0.080 Sum_probs=38.0
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
++.+|++.+.++-.|-....-++..|.++|++|+++...-..+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e 129 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIE 129 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 5679999999999999999999999999999999998664443
No 238
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.38 E-value=27 Score=32.59 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=34.7
Q ss_pred ccceeecccCChhhHHHHHH------hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 350 ESVGCYVCHSGFSSVTEAVI------SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~------~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+++ +|+-||-||++.++. .++|++.+-.. .+|.. .+ ..++++.++++++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL---~~----~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFY---TD----WRPFEVDKLVIALAK 92 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceec---cc----CCHHHHHHHHHHHHc
Confidence 455 999999999999986 48898886521 12211 11 466777777777775
No 239
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.04 E-value=1.1e+02 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEE
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNF 141 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~ 141 (465)
..+.+++++.+||+||.+.. ...+ |+++|+|++.+
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~-a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYL-ARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHH-HHhcCCCEEEe
Confidence 45667888889999999984 3566 88899999865
No 240
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.81 E-value=1.6e+02 Score=29.67 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCCChhh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLS-LHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~ 52 (465)
-++++..+|.|-..-...||..|. ++|..|.++..+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 456666779999999999999997 58999999998877653
No 241
>PRK12342 hypothetical protein; Provisional
Probab=46.18 E-value=20 Score=33.17 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcc------cccccccccCCeeEEEec
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYW------LPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~------~~~~~A~~~giP~v~~~~ 143 (465)
..|.+.+++.++|+|++...+.. +..+ |+.+|+|++.+..
T Consensus 99 ~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~l-A~~Lg~P~vt~v~ 144 (254)
T PRK12342 99 KALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLL-GELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHH-HHHhCCCcEeeEE
Confidence 45566666667999998654433 2456 9999999998754
No 242
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=45.43 E-value=1e+02 Score=25.30 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHH
Q 037721 24 ISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQP 103 (465)
Q Consensus 24 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (465)
-..+-.+.++++++|-+|....+...-+.+.+.- -++.... .+|-+..............-.-....+...+
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~H-----PeW~~~~---~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~ 114 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERH-----PEWFVRD---ADGRPMRGERFGYPGWYTCCLNSPYREFLLE 114 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhC-----CceeeEC---CCCCCcCCCCcCCCCceecCCCccHHHHHHH
Confidence 3567788889999999988887666444443322 2222222 1222100000000000000000112234667
Q ss_pred HHHHHHhhcCCcEEEEcC
Q 037721 104 QIKTLLSQLKPHFVFFDF 121 (465)
Q Consensus 104 ~l~~~l~~~~pD~vi~D~ 121 (465)
.++++++...+|-|+.|.
T Consensus 115 ~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 115 QIREILDRYDVDGIFFDI 132 (132)
T ss_pred HHHHHHHcCCCCEEEecC
Confidence 889999999999998874
No 243
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=44.89 E-value=69 Score=27.88 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCE---EEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCc
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVK---VSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMT 87 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~---V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (465)
+||+|+..++. ..+..+.++|.+++++ |.+++.+.......+.........+.... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~----~------------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEK----N------------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGG----G-------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEecccc----C-------------
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccc-cccccccCCeeEEEecc
Q 037721 88 PHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLP-GLVGSQLGIKTVNFSVF 144 (465)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~-~~~A~~~giP~v~~~~~ 144 (465)
........+.+.+.+++.+||++|+-.+..... .+ -+.....++.++++
T Consensus 61 -------~~~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~-l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -------FQPRSENDEELLELLESLNPDLIVVAGYGRILPKEF-LSIPPYGIINIHPS 110 (181)
T ss_dssp -------SSSHHHHHHHHHHHHHHTT-SEEEESS-SS---HHH-HHHSTTSEEEEESS
T ss_pred -------CCchHhhhhHHHHHHHhhccceeehhhhHHHhhhhh-hhcccccEEEEeec
No 244
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=44.80 E-value=94 Score=31.94 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=58.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc----cc-CC-----CCCeeEEEccCCCCCCCCCCCCC
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS----SL-NL-----TPMADIIPLQIPHVDGLPPGLDS 82 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~----~g-~~-----~~~~~~~~l~~~~~~~~~~~~~~ 82 (465)
+++.-.|+.|-..-.++++.+.+++|..+.|++.++..+.+.. .| ++ ...+.+.... |..
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~-------p~~--- 335 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY-------PES--- 335 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc-------ccc---
Confidence 5666677999999999999999999999999999987765433 22 00 0113332221 000
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 83 TSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
...+.....+.+.+++.+++.||.|...
T Consensus 336 -------------~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 -------------AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred -------------CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0012244566777888899999999865
No 245
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=44.39 E-value=71 Score=28.72 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=56.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhccc-CCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHH
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSL-NLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMA 91 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (465)
+++...|+.|-..-.+.++....++|+.|.|++.+...+.+.... +.. +.+...- + .... ..+....
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~--~~~~~~~----~---~~l~-~~~~~~~-- 86 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKG--WDLEDYI----D---KSLY-IVRLDPS-- 86 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcC--CChHHHH----h---CCeE-EEecCHH--
Confidence 455566799999999999988888899999999988766543321 000 1111100 0 0000 0000100
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 92 ELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
.+..........+..++++.+++.||.|.+.
T Consensus 87 -~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls 117 (224)
T TIGR03880 87 -DFKTSLNRIKNELPILIKELGASRVVIDPIS 117 (224)
T ss_pred -HHHhhHHHHHHHHHHHHHHhCCCEEEEcChH
Confidence 0111233344566777788899999999854
No 246
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=44.23 E-value=83 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=23.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+||+|+..+..+ +...++|.++||+|..+.+..
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcCC
Confidence 478888666433 666688888999988766543
No 247
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=44.19 E-value=2e+02 Score=27.17 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHH
Q 037721 288 IKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEA 367 (465)
Q Consensus 288 ~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Ea 367 (465)
-..+++.++..+..+++..+. ...+|+.|.+..+.+-+=+ |+++ .=...|.+.+..|
T Consensus 149 e~~~~~~l~~~~~Dlivlagy----------m~il~~~~l~~~~~~iINi-----------HpSL--LP~f~G~~p~~~a 205 (280)
T TIGR00655 149 EKRQLELLKQYQVDLVVLAKY----------MQILSPDFVKRYPNKIINI-----------HHSF--LPAFIGANPYQRA 205 (280)
T ss_pred HHHHHHHHHHhCCCEEEEeCc----------hhhCCHHHHhhccCCEEEe-----------cCCc--CCCCCCcCHHHHH
Confidence 345677777788888888775 4567777765443332223 4444 4445789999999
Q ss_pred HHhCCceeecccc--ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 368 VISDCQLVLLPLK--GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 368 l~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
+.+|+...++=.+ -+..+.+..+.+. -+.+... -|.++|.+.+.++-
T Consensus 206 i~~G~k~tG~TvH~V~e~lD~GpII~Q~---~v~I~~~-----dt~~~L~~ri~~~E 254 (280)
T TIGR00655 206 YERGVKIIGATAHYVTEELDEGPIIEQD---VVRVDHT-----DNVEDLIRAGRDIE 254 (280)
T ss_pred HHcCCCeEEEEEEEEcCCCcCCCeEEEE---EEEcCCC-----CCHHHHHHHHHHHH
Confidence 9999999887754 3555666666554 2233333 58999998887644
No 248
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=44.13 E-value=11 Score=28.95 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHH
Q 037721 27 FVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQIK 106 (465)
Q Consensus 27 ~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (465)
++.+|+.|.+.|++ +++++...+.+++.| +.+..+- +-. ...+ .+. -...+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~G-----i~~~~v~----~~~-~~~~----~~~------------g~~~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEHG-----IEVTEVV----NKI-GEGE----SPD------------GRVQIM 53 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHTT-------EEECC----EEH-STG-----GGT------------HCHHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHcC-----CCceeee----eec-ccCc----cCC------------chhHHH
Confidence 57899999999965 456787888888888 7755553 100 0000 000 001677
Q ss_pred HHHhhcCCcEEEEcCCCcc---------cccccccccCCeeE
Q 037721 107 TLLSQLKPHFVFFDFTHYW---------LPGLVGSQLGIKTV 139 (465)
Q Consensus 107 ~~l~~~~pD~vi~D~~~~~---------~~~~~A~~~giP~v 139 (465)
+++++.+.|+||....... -..+ |...+||++
T Consensus 54 ~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~-a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKNGKIDLVINTPYPFSDQEHTDGYKIRRA-AVEYNIPLF 94 (95)
T ss_dssp HHHHTTSEEEEEEE--THHHHHTHHHHHHHHH-HHHTTSHEE
T ss_pred HHHHcCCeEEEEEeCCCCcccccCCcHHHHHH-HHHcCCCCc
Confidence 8888889999997653211 1245 667777765
No 249
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.04 E-value=27 Score=33.69 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcc----------cccccccccCCeeEEEec
Q 037721 93 LLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYW----------LPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 93 ~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~----------~~~~~A~~~giP~v~~~~ 143 (465)
++....+...+.+.+.+++.+||+||+...+-. +..+ .++++||.+.-..
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV-~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAV-QEKLGIPVVTAMY 119 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHH-HHhhCCCEEEEec
Confidence 344445556678889999999999999874322 1124 6689999986544
No 250
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=43.52 E-value=2.2e+02 Score=24.69 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=60.6
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEe---CC---CChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFS---AP---GNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDST 83 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~---~~---~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (465)
+--|.++...+.|-..-.+.+|-..+.+|++|.++- .. .-...+++.+ +++.... .++... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~-----~~~~~~g----~g~~~~--~- 72 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHG-----VEFQVMG----TGFTWE--T- 72 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcC-----cEEEECC----CCCeec--C-
Confidence 446788888999999999999999999999997662 22 1111233333 7777775 222111 1
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 84 SEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
.+ ... .............+.+.+...|+||-|-..
T Consensus 73 ~~-~~~----~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 73 QN-REA----DTAIAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred CC-cHH----HHHHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 11 111 112233344566777777899999999854
No 251
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=43.48 E-value=20 Score=30.44 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+|.++-.|.+|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466776776665 78999999999999999875
No 252
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=43.47 E-value=23 Score=32.88 Aligned_cols=40 Identities=10% Similarity=-0.047 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcc------cccccccccCCeeEEEec
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYW------LPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~------~~~~~A~~~giP~v~~~~ 143 (465)
..|.+.+++..+|+|++...+.. +..+ |+.+|+|++.+..
T Consensus 102 ~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~l-Ae~Lg~P~vt~v~ 147 (256)
T PRK03359 102 SALAAAAQKAGFDLILCGDGSSDLYAQQVGLLV-GEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCCCcHHHHH-HHHhCCCceeeEE
Confidence 45566666678999998654433 2356 9999999998754
No 253
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=43.26 E-value=42 Score=33.84 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=27.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
++|||++-.+++-| +|++.|++.++...+++.+.+.
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 47999999998777 6899999988665666655543
No 254
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=43.03 E-value=2e+02 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=31.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+.+.-.|+.|=..-++.++....+.|..|.|+.++.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 345556799999999999999999999999999986
No 255
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=42.75 E-value=1e+02 Score=27.92 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=33.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLH-GVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~i 53 (465)
+++...|+.|=..-+++++..++.. |+.|.|++.+.....+
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHH
Confidence 4556667999999999999888877 9999999988766543
No 256
>PRK04328 hypothetical protein; Provisional
Probab=42.48 E-value=2.7e+02 Score=25.54 Aligned_cols=104 Identities=8% Similarity=-0.005 Sum_probs=59.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc----cc-CC-----CCCeeEEEccCCCCCCCCCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS----SL-NL-----TPMADIIPLQIPHVDGLPPGLD 81 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~----~g-~~-----~~~~~~~~l~~~~~~~~~~~~~ 81 (465)
-+++.-.|+.|-..-.++++..-+++|+.+.|++.++..+.+.+ .| +. ...+.+..... ........
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~---~~~~~~~~ 101 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFT---GGIGSAAK 101 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEeccc---cccccccc
Confidence 35566667999999999988887788999999998776654322 23 10 11244443321 00000000
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 82 STSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
.... .... ....+.....+.+.+++.+++.||.|..+
T Consensus 102 -~~~~---~~~~-~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 102 -REKY---VVKD-PDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred -cccc---cccC-cccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0000 0000 00112344567777888899999999965
No 257
>PRK05920 aromatic acid decarboxylase; Validated
Probab=41.92 E-value=36 Score=30.42 Aligned_cols=44 Identities=16% Similarity=-0.012 Sum_probs=34.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
+||++--.++.+ ..=.+.+.+.|.+.||+|+++.++.....+..
T Consensus 4 krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 467776555444 46889999999999999999999987776643
No 258
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=41.91 E-value=28 Score=30.41 Aligned_cols=41 Identities=27% Similarity=0.142 Sum_probs=31.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIK 54 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~ 54 (465)
|++.-.|+.|-.. ...+.+.|.++|++|.++.++.....+.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 4554455555444 4889999999999999999998887764
No 259
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=41.51 E-value=45 Score=32.12 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.5
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 16 FPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
++.||.|-+.-.+.||++|.+||..+-+++-..-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 67899999999999999999999999999866544
No 260
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.98 E-value=1.5e+02 Score=28.14 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=56.0
Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHHHHh--CCCEEEEEeC-C-CChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCC
Q 037721 7 EADQLHVVMFPWFAFGHISPFVQLSNKLSL--HGVKVSFFSA-P-GNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDS 82 (465)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~--rGh~V~~~~~-~-~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (465)
..+++||+|+..+....+. +|.++... .+++|.++.+ . .....+++.| +.+..++ .. +..
T Consensus 86 ~~~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----Ip~~~~~----~~-~~~--- 149 (286)
T PRK13011 86 PAARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHG-----IPFHHFP----IT-PDT--- 149 (286)
T ss_pred cccCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHHhC-----CCEEEeC----CC-cCc---
Confidence 3457899999888544443 33444433 3688877644 3 3444556666 7777664 10 000
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcC-CCcccccccccccCCeeEEEec
Q 037721 83 TSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDF-THYWLPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~-~~~~~~~~~A~~~giP~v~~~~ 143 (465)
. ......+.++++++++|++|.-. +-.-...+ -+.+.-.++.+++
T Consensus 150 ---~------------~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~-l~~~~~~iiNiHp 195 (286)
T PRK13011 150 ---K------------PQQEAQVLDVVEESGAELVVLARYMQVLSPEL-CRKLAGRAINIHH 195 (286)
T ss_pred ---h------------hhhHHHHHHHHHHhCcCEEEEeChhhhCCHHH-HhhccCCeEEecc
Confidence 0 00123467778888999977554 22222333 3344444455443
No 261
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=40.85 E-value=1.1e+02 Score=30.76 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEe
Q 037721 106 KTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFS 142 (465)
Q Consensus 106 ~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~ 142 (465)
.+.+++.+||++|... -+..+ |+++|||.+-+.
T Consensus 343 ~~~~~~~~pDl~Ig~s---~~~~~-a~~~giP~~r~~ 375 (416)
T cd01980 343 IAAVEEYRPDLAIGTT---PLVQY-AKEKGIPALYYT 375 (416)
T ss_pred HHHHhhcCCCEEEeCC---hhhHH-HHHhCCCEEEec
Confidence 3455677999999885 24567 999999998653
No 262
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=40.70 E-value=68 Score=28.13 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEcc
Q 037721 24 ISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 24 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~ 69 (465)
=.-+..||+.|.+.|+++. ++....+.++..| +.+..+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~G-----I~v~~V~ 48 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEAG-----IPVTDVS 48 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHcC-----CeEEEhh
Confidence 3457899999999999984 5777888899888 7777764
No 263
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.67 E-value=39 Score=32.02 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=35.9
Q ss_pred ccccceeecccCChhhHHHHHH----hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|+-||-||++.++. .++|++.+-. |-.---. .++.+++.++++++++
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~-----------------G~lGFLt----~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA-----------------GHLGFLT----DITVDEAEKFFQAFFQ 119 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC-----------------CCcccCC----cCCHHHHHHHHHHHHc
Confidence 34566 999999999998866 3788887542 2111122 1567788888888776
No 264
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=40.13 E-value=3.5e+02 Score=28.54 Aligned_cols=144 Identities=12% Similarity=0.173 Sum_probs=71.6
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhcc
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRH 349 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~ 349 (465)
++.|-|-+||.+ +....+++...|+..|+.+-+.+.. ....|+.+. .|+-+.+ .
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~s----------ahr~~~~~~-----------~~~~~~~---~ 463 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVS----------AHRTPERMF-----------SYARSAH---S 463 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEEC----------CccCHHHHH-----------HHHHHHH---H
Confidence 445666677644 5566666777777777766544433 233444332 1111111 1
Q ss_pred ccceeecccCChhhHHHHHH---hCCceeecccccc--chhhH-HHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 350 ESVGCYVCHSGFSSVTEAVI---SDCQLVLLPLKGD--QFLNS-KLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~---~GvP~l~~P~~~D--Q~~na-~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..++.+|+-.|.-.-+-.+. .-+|+|.+|.... -...+ .-+.+ +--|+-+.--.-++..++.-+...|-.+ .
T Consensus 464 ~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i~~~~~aa~~a~~i~~~-~ 541 (577)
T PLN02948 464 RGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAIGNATNAGLLAVRMLGA-S 541 (577)
T ss_pred CCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEecCChHHHHHHHHHHHhc-C
Confidence 12233888777644333333 3579999998432 11222 12222 2114222111001134555555444332 3
Q ss_pred ccCCcchHHHHHHHHHHHHHHHcC
Q 037721 424 DVNKEPGASIRANQKWWREFLLNG 447 (465)
Q Consensus 424 ~~~~~~~~~~~~~a~~l~~~~~~~ 447 (465)
+++++++.+..++.+++.
T Consensus 542 ------~~~~~~~~~~~~~~~~~~ 559 (577)
T PLN02948 542 ------DPDLLDKMEAYQEDMRDM 559 (577)
T ss_pred ------CHHHHHHHHHHHHHHHHH
Confidence 678888888888887653
No 265
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=40.10 E-value=3.8e+02 Score=26.47 Aligned_cols=90 Identities=14% Similarity=0.049 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCC-----hhhhhhcCCCceEEecccchH---hhhcccccee
Q 037721 283 LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLP-----PGFMDRVKDRGVVHTGWVQQQ---LILRHESVGC 354 (465)
Q Consensus 283 ~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp-----~~~~~~~~~~nv~~~~~~pq~---~vL~~~~~~~ 354 (465)
.....+..++++++..+.++.+.+..+.... .....++ .|-....+.-.+.+..|+||. .+|-.+++.
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~---~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~N- 267 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEGRALN---SLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFN- 267 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCCccHH---HHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccc-
Confidence 4456678888888877777766655542210 0001111 000001122356677888875 588888872
Q ss_pred ecccCChhhHHHHHHhCCceeecc
Q 037721 355 YVCHSGFSSVTEAVISDCQLVLLP 378 (465)
Q Consensus 355 ~ItHgG~~s~~Eal~~GvP~l~~P 378 (465)
+=. |=-|+..|..+|+|.|=-.
T Consensus 268 -fVR-GEDSfVRAqwAgkPFvWhI 289 (374)
T PF10093_consen 268 -FVR-GEDSFVRAQWAGKPFVWHI 289 (374)
T ss_pred -eEe-cchHHHHHHHhCCCceEec
Confidence 223 5569999999999998533
No 266
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=40.04 E-value=1.8e+02 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhhcCCcEEEEcC
Q 037721 100 LMQPQIKTLLSQLKPHFVFFDF 121 (465)
Q Consensus 100 ~~~~~l~~~l~~~~pD~vi~D~ 121 (465)
...+.+.+++++.+||+|++-.
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~~ 108 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE-
T ss_pred HHHHHHHHHHHHcCCCEEEECC
Confidence 3557789999999999988643
No 267
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=39.87 E-value=3.3e+02 Score=26.78 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=75.7
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccc-hHhhhcccc
Q 037721 273 IYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQ-QQLILRHES 351 (465)
Q Consensus 273 v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p-q~~vL~~~~ 351 (465)
++|. |-+..-+.+++..++..++..+.+++-.....+. .-|.+|. ++-. .|.. ..++.....
T Consensus 120 ~~ia-Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpR---------tsp~~f~------g~~~-e~l~~L~~~~~~~G 182 (360)
T PRK12595 120 SFIF-GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPR---------TSPYDFQ------GLGV-EGLKILKQVADEYG 182 (360)
T ss_pred eeEE-ecccccCHHHHHHHHHHHHHcCCcEEEccccCCC---------CCCcccc------CCCH-HHHHHHHHHHHHcC
Confidence 3344 6666567888888999898888887764333211 1122222 1111 1111 222333344
Q ss_pred ceeecccCChhhHHHHHHhCCceeeccc-cccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 352 VGCYVCHSGFSSVTEAVISDCQLVLLPL-KGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 352 ~~~~ItHgG~~s~~Eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+..+-+=....++-++..+ ++++-+|- ...|..-...+.+. |.-+.+...- ..+.+++..+++.+..
T Consensus 183 l~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~-gkPVilk~G~---~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 183 LAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRV-NKPVLLKRGL---SATIEEFIYAAEYIMS 250 (360)
T ss_pred CCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcc-CCcEEEeCCC---CCCHHHHHHHHHHHHH
Confidence 4445455555566666666 88888884 44556666666666 7777777641 2588888888888874
No 268
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=39.85 E-value=37 Score=29.83 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=35.7
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCCChhhhhc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSL-HGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~i~~ 55 (465)
||++.-.|+.| ..=...++++|.+ .||+|.++.++.....+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 68777777666 6669999999999 5999999999988877754
No 269
>PRK14099 glycogen synthase; Provisional
Probab=39.75 E-value=47 Score=34.16 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=45.0
Q ss_pred EEecccchHh-hh-ccccceeecc---cCCh-hhHHHHHHhCCceeeccccc--cchhhHH---HHhhhhcceEEeeecC
Q 037721 336 VHTGWVQQQL-IL-RHESVGCYVC---HSGF-SSVTEAVISDCQLVLLPLKG--DQFLNSK---LVAGDLKAGVEVNRRD 404 (465)
Q Consensus 336 ~~~~~~pq~~-vL-~~~~~~~~It---HgG~-~s~~Eal~~GvP~l~~P~~~--DQ~~na~---~v~~~~G~G~~l~~~~ 404 (465)
.+.+|-.+.. ++ +.+++ |+. +=|. .+.+||+++|+|.|+....+ |.-.... ..+.. +.|+.++.
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC--
Confidence 4567733322 23 23565 764 2333 47899999997777654322 3211110 01112 46777776
Q ss_pred CCCccCHHHHHHHHHH---hhc
Q 037721 405 HDGHFGKEDIFKAVKT---VMV 423 (465)
Q Consensus 405 ~~~~~~~~~l~~ai~~---ll~ 423 (465)
-+++++.++|.+ +++
T Consensus 429 ----~d~~~La~ai~~a~~l~~ 446 (485)
T PRK14099 429 ----VTADALAAALRKTAALFA 446 (485)
T ss_pred ----CCHHHHHHHHHHHHHHhc
Confidence 389999999987 566
No 270
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=39.22 E-value=33 Score=29.83 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=32.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIK 54 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~ 54 (465)
||++.-.++. ...-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 5666666644 45566799999999999999999987766654
No 271
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=39.21 E-value=75 Score=28.94 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=35.0
Q ss_pred EEEecC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 13 VVMFPW-FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
|.|.+. ||-|-..-++.||.+|+++|-.|+++=.++++...
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 555554 79999999999999999999999999888777653
No 272
>PRK13768 GTPase; Provisional
Probab=39.19 E-value=1.1e+02 Score=28.42 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=31.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
+++...+|.|-..-+..++..|+.+|++|.++..+..
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 5556667999999999999999999999999976643
No 273
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=39.13 E-value=45 Score=31.94 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=34.7
Q ss_pred EEEEecC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 12 HVVMFPW-FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 12 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
|++|+.. ||-|-..=..++|-.++++|++|.+++++.....-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~ 44 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLS 44 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHH
Confidence 5666555 79999999999999999999999999999876553
No 274
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=38.88 E-value=1.6e+02 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEE
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNF 141 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~ 141 (465)
..+.+++++.+||++|.+.. ...+ |+++|+|++.+
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~-a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRI-AEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHH-HHHcCCCEEEe
Confidence 46677888889999999984 3567 89999999865
No 275
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=38.73 E-value=3e+02 Score=24.95 Aligned_cols=151 Identities=9% Similarity=-0.030 Sum_probs=76.5
Q ss_pred ccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccc
Q 037721 263 WLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQ 342 (465)
Q Consensus 263 ~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~p 342 (465)
+++..+ ++++.|..|..+ ..+ +..|...+.++.|+...- .+.+..-....++....--.
T Consensus 20 ~l~~~~-~~VLVVGGG~VA------~RK-~~~Ll~~gA~VtVVap~i-------------~~el~~l~~~~~i~~~~r~~ 78 (223)
T PRK05562 20 SLLSNK-IKVLIIGGGKAA------FIK-GKTFLKKGCYVYILSKKF-------------SKEFLDLKKYGNLKLIKGNY 78 (223)
T ss_pred EEECCC-CEEEEECCCHHH------HHH-HHHHHhCCCEEEEEcCCC-------------CHHHHHHHhCCCEEEEeCCC
Confidence 444333 557777776655 222 233444677776664321 11222111122333222222
Q ss_pred hHhhhccccceeecccCChhhHHHHHHh-----CCceeeccccccchhhHH-----HHhhhhcceEEeeecCCCCccCHH
Q 037721 343 QQLILRHESVGCYVCHSGFSSVTEAVIS-----DCQLVLLPLKGDQFLNSK-----LVAGDLKAGVEVNRRDHDGHFGKE 412 (465)
Q Consensus 343 q~~vL~~~~~~~~ItHgG~~s~~Eal~~-----GvP~l~~P~~~DQ~~na~-----~v~~~~G~G~~l~~~~~~~~~~~~ 412 (465)
+..-|..+.+ +|..-+-..+.+.++. |+++.+ .|++..+. .+.+- ++-+.+......+ .-+.
T Consensus 79 ~~~dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~----vd~p~~~dFi~PAiv~rg-~l~IaIST~G~sP-~lar 150 (223)
T PRK05562 79 DKEFIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYID----CSDYKKGLCIIPYQRSTK-NFVFALNTKGGSP-KTSV 150 (223)
T ss_pred ChHHhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEE----cCCcccCeEEeeeEEecC-CEEEEEECCCcCc-HHHH
Confidence 3334555555 8888787666665543 556554 34433332 34443 4444454332122 3346
Q ss_pred HHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcC
Q 037721 413 DIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNG 447 (465)
Q Consensus 413 ~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 447 (465)
.|++.|++++.+ ...+-+.+.++++.+++.
T Consensus 151 ~lR~~ie~~l~~-----~~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 151 FIGEKVKNFLKK-----YDDFIEYVTKIRNKAKKN 180 (223)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhh
Confidence 688888888852 456777777777777654
No 276
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=38.60 E-value=2.9e+02 Score=29.05 Aligned_cols=52 Identities=23% Similarity=0.209 Sum_probs=34.4
Q ss_pred cCChhh-HHHHHH-hC--Cceee--cc-ccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 358 HSGFSS-VTEAVI-SD--CQLVL--LP-LKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 358 HgG~~s-~~Eal~-~G--vP~l~--~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+||.|| +.|.+. +| +|++. +| .+.||..-.....+. .++++.|.+.|...+.
T Consensus 565 ~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~--------------gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 565 DGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL--------------GLDAEGIARRILEWLK 623 (627)
T ss_pred cccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc--------------CCCHHHHHHHHHHHHh
Confidence 899876 566654 34 56654 44 256776666666655 3788888888877764
No 277
>PHA02754 hypothetical protein; Provisional
Probab=38.48 E-value=60 Score=22.10 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHcCCc
Q 037721 430 GASIRANQKWWREFLLNGQI 449 (465)
Q Consensus 430 ~~~~~~~a~~l~~~~~~~~~ 449 (465)
+..|++.++++++.+.++|-
T Consensus 13 eK~Fke~MRelkD~LSe~Gi 32 (67)
T PHA02754 13 EKDFKEAMRELKDILSEAGI 32 (67)
T ss_pred HhHHHHHHHHHHHHHhhCce
Confidence 78999999999999987753
No 278
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.41 E-value=56 Score=33.36 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCcEEEEecCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCCC
Q 037721 9 DQLHVVMFPWFAFGHISP------------FVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+-+||++...|+.=.+.| -..||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 346888888888877765 4789999999999999999764
No 279
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.24 E-value=2e+02 Score=27.59 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=56.8
Q ss_pred CcEEEEecCCCccC-----HHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGH-----ISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTS 84 (465)
Q Consensus 10 ~~~il~~~~~~~GH-----~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (465)
+.-|++.|+.+.|. ..-+..|++.|.++|.+|.++++++..+..+......+ -....+. ..
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~-~~~~~l~--------g~----- 239 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLP-GELRNLA--------GE----- 239 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCC-cccccCC--------CC-----
Confidence 34466666554342 23678999999888999999888766554433210000 0000000 00
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEec
Q 037721 85 EMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~ 143 (465)
. ....+..+++ +-|++|+.- .....+ |..+|+|+|.++.
T Consensus 240 -~--------------sL~el~ali~--~a~l~I~~D--SGp~Hl-AaA~~~P~i~lfG 278 (334)
T TIGR02195 240 -T--------------SLDEAVDLIA--LAKAVVTND--SGLMHV-AAALNRPLVALYG 278 (334)
T ss_pred -C--------------CHHHHHHHHH--hCCEEEeeC--CHHHHH-HHHcCCCEEEEEC
Confidence 0 1123344444 458989765 345677 8899999998755
No 280
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=38.05 E-value=29 Score=30.35 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=24.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
||.++. +.|++ --.|.++..+|||+||-++....+
T Consensus 2 KIaiIg--AsG~~--Gs~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 2 KIAIIG--ASGKA--GSRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred eEEEEe--cCchh--HHHHHHHHHhCCCeeEEEEeChHh
Confidence 455543 23433 236789999999999999977544
No 281
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=37.70 E-value=98 Score=29.21 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred eecccCChhhHHHHHHh-----CCcee-eccc
Q 037721 354 CYVCHSGFSSVTEAVIS-----DCQLV-LLPL 379 (465)
Q Consensus 354 ~~ItHgG~~s~~Eal~~-----GvP~l-~~P~ 379 (465)
.+|.-||-||+.|++.. ..|.+ ++|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 39999999999997643 34545 4895
No 282
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=37.69 E-value=1.6e+02 Score=21.54 Aligned_cols=50 Identities=12% Similarity=0.325 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH--------------cCCchHHHHHHHHHHHHhh
Q 037721 412 EDIFKAVKTVMVDVNKEPGASIRANQKWWREFLL--------------NGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 412 ~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~--------------~~~~~~~~~~~~~~~l~~~ 464 (465)
+.|.+.-.++|. |+.++++++.++.|.---. ..+.+...+.+++.+++++
T Consensus 9 dgLveKytELL~---Ge~~~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~Ik~l 72 (82)
T PF10835_consen 9 DGLVEKYTELLL---GETSPEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEIKQL 72 (82)
T ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 567788888998 8889999999988875432 1244556678888777754
No 283
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=37.48 E-value=2.3e+02 Score=28.89 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEE
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNF 141 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~ 141 (465)
..+.+.+++.+||++|... ....+ |+++|||++.+
T Consensus 385 ~e~~~~i~~~~pDl~ig~~---~~~~~-a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYKADLLIAGG---KERYT-ALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcCCCEEEEcc---chHHH-HHhcCCCEEEc
Confidence 4567777888999999864 23556 88899999875
No 284
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.36 E-value=1.3e+02 Score=28.53 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=37.5
Q ss_pred cccceeecccCChhhHHHHHH----hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 349 HESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++ +|+=||-||+++++. .++|++.+... .+|. + . ..+.+++.++|+++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF-l--~----~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF-L--T----DIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc-c--c----cCCHHHHHHHHHHHHc
Confidence 4556 999999999999975 36788876541 1221 2 2 2678899999999887
No 285
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=37.21 E-value=43 Score=28.64 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=34.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh--hhhhcccCCCCCeeEEEcc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI--PRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~--~~i~~~g~~~~~~~~~~l~ 69 (465)
..+|+++-++++||.. |.-|++.|++|++...+... +..++.| ++..++.
T Consensus 4 ~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-----f~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGSASWEKAKADG-----FEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTCHHHHHHHHTT------ECCEHH
T ss_pred CCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCCcCHHHHHHCC-----CeeccHH
Confidence 3589999999999864 67899999999999887763 3455556 6665554
No 286
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.97 E-value=3e+02 Score=24.46 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=73.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhcc
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRH 349 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~ 349 (465)
++++.|..|..+ ..-+..|...|.++.++-... .+.+..-....++....--.+...+..
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-------------~~~l~~l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-------------ESELTLLAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-------------CHHHHHHHHcCCEEEEeCCCCHHHhCC
Confidence 557777776655 233444555777766553221 011211111224433222223445666
Q ss_pred ccceeecccCChhhHH-----HHHHhCCceee--ccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 350 ESVGCYVCHSGFSSVT-----EAVISDCQLVL--LPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~-----Eal~~GvP~l~--~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
+++ +|..-|...+. +|-..|+|+-+ -|-..| +..-..+.+- ++-+.+......+ .-+..|++.|++++
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP-~la~~lr~~ie~~l 144 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAP-VLARLLRERIETLL 144 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCc-HHHHHHHHHHHHhc
Confidence 666 88888876443 34457888843 232222 2222233333 4444444332111 33466888888887
Q ss_pred cccCCcchHHHHHHHHHHHHHHHc
Q 037721 423 VDVNKEPGASIRANQKWWREFLLN 446 (465)
Q Consensus 423 ~~~~~~~~~~~~~~a~~l~~~~~~ 446 (465)
. +....+-+.+.++++.+++
T Consensus 145 ~----~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 145 P----PSLGDLATLAATWRDAVKK 164 (205)
T ss_pred c----hhHHHHHHHHHHHHHHHHh
Confidence 4 1135566666677776654
No 287
>PRK13054 lipid kinase; Reviewed
Probab=36.96 E-value=1.1e+02 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.8
Q ss_pred eecccCChhhHHHHHHh------C--Cceeeccc
Q 037721 354 CYVCHSGFSSVTEAVIS------D--CQLVLLPL 379 (465)
Q Consensus 354 ~~ItHgG~~s~~Eal~~------G--vP~l~~P~ 379 (465)
.+|.-||-||+.|++.. + +|+-++|.
T Consensus 59 ~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 59 TVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred EEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 39999999999999755 3 58899995
No 288
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.70 E-value=2.3e+02 Score=26.78 Aligned_cols=83 Identities=8% Similarity=0.024 Sum_probs=48.2
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHh--CCCEEEEEeCCC--ChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCC
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSL--HGVKVSFFSAPG--NIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDST 83 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~--rGh~V~~~~~~~--~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (465)
.+++||+|+..+..+.+.-++ +...+ -+++|.++.+.. ....+++.| +.+..++ .. +..
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----Ip~~~~~----~~-~~~---- 149 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVERFG-----IPFHHVP----VT-KET---- 149 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHHhC-----CCEEEec----cC-ccc----
Confidence 457899999888755555444 33333 257777765443 334455555 7777665 11 000
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcC
Q 037721 84 SEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDF 121 (465)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~ 121 (465)
.......+.+++++++||++|.-.
T Consensus 150 --------------~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 150 --------------KAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred --------------cchhHHHHHHHHHHhCCCEEEEec
Confidence 000223567778889999977554
No 289
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.62 E-value=47 Score=31.53 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=37.5
Q ss_pred ccccceeecccCChhhHHHHHH----hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|+=||-||++.++. +++|++.+-.. .+|. .. .++++++.++++++++
T Consensus 63 ~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF---Lt----~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 63 GSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGF---LA----TVSKEEIEETIDELLN 119 (292)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCc---cc----ccCHHHHHHHHHHHHc
Confidence 34566 999999999999987 37888875421 1221 12 1577888888888887
No 290
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.45 E-value=48 Score=31.59 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=37.5
Q ss_pred ccccceeecccCChhhHHHHHH----hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|+=||-||++.|+. .++|++.+-.. .+|.. .+ ++.+++.++++++++
T Consensus 67 ~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL---~~----~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 67 QYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFL---TQ----IPREYMTDKLLPVLE 123 (296)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEe---ec----cCHHHHHHHHHHHHc
Confidence 34566 999999999999975 37898885421 12222 21 677888888888886
No 291
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=36.28 E-value=1.6e+02 Score=29.74 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=53.3
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHH
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHM 90 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (465)
+|+++...+ ...+.+++.|...|-+|..+......+..+. ++ .+ ... ..+.
T Consensus 312 krvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------~~--------~~-~~~---~~D~ 362 (432)
T TIGR01285 312 KKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------LP--------VE-TVV---IGDL 362 (432)
T ss_pred CEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------CC--------cC-cEE---eCCH
Confidence 466665433 4668888888888988877766554332211 11 00 000 0000
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEE
Q 037721 91 AELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNF 141 (465)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~ 141 (465)
..+.+++++.++|++|.... ...+ |+++|||++-+
T Consensus 363 ------------~~l~~~i~~~~~dliig~s~---~k~~-A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ------------EDLEDLACAAGADLLITNSH---GRAL-AQRLALPLVRA 397 (432)
T ss_pred ------------HHHHHHHhhcCCCEEEECcc---hHHH-HHHcCCCEEEe
Confidence 24466778889999998873 3567 99999999864
No 292
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=35.68 E-value=50 Score=30.21 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=32.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhhcc
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGNIPRIKSS 56 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~i~~~ 56 (465)
|++--.|+.+=+.=.+.+.+.|.++ |++|.++.++...+.+...
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 4443334333336899999999999 9999999999877777654
No 293
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=35.65 E-value=1.1e+02 Score=21.74 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=27.9
Q ss_pred HHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 416 KAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 416 ~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
--|.++++ |+++.+.|.+ +..+++|-....+|++...|.+
T Consensus 38 lLitRLmn------neeIsEeaQ~--EMA~eAgi~~~rID~IA~fLNq 77 (81)
T PF10820_consen 38 LLITRLMN------NEEISEEAQQ--EMASEAGIDEQRIDDIANFLNQ 77 (81)
T ss_pred HHHHHHhc------cHhhhHHHHH--HHHHHcCCcHHHHHHHHHHHHH
Confidence 34667777 7888877664 4455667777788888777764
No 294
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.60 E-value=2.9e+02 Score=26.15 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHH
Q 037721 289 KELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAV 368 (465)
Q Consensus 289 ~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal 368 (465)
..+.+.++..+..+++..+. ...+|+.|.+..+.+-+=+ |+++ .=...|.+.+..|+
T Consensus 155 ~~~~~~l~~~~~Dlivlagy----------~~il~~~~l~~~~~~iiNi-----------HpSL--LP~yrG~~~~~~ai 211 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARY----------MQILSPDFVARFPGRIINI-----------HHSF--LPAFKGAKPYHQAY 211 (286)
T ss_pred HHHHHHHHHhCCCEEEEecc----------hhhcCHHHHhhccCCceec-----------Cccc--CCCCCCCCHHHHHH
Confidence 34666677778888888765 4566766665433221112 4444 33456889999999
Q ss_pred HhCCceeecccc--ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHH
Q 037721 369 ISDCQLVLLPLK--GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWR 441 (465)
Q Consensus 369 ~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~ 441 (465)
.+|+...++=++ .+..+.+..+.+. .+.+... -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 212 ~~G~~~tG~TiH~v~~~~D~G~Ii~Q~---~v~i~~~-----dt~~~L~~ri~~~E~-------~~~~~ai~~~~ 271 (286)
T PRK06027 212 ERGVKLIGATAHYVTADLDEGPIIEQD---VIRVDHR-----DTAEDLVRAGRDVEK-------QVLARAVRWHL 271 (286)
T ss_pred HCCCCeEEEEEEEEcCCCcCCCcEEEE---EEEcCCC-----CCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 999999887753 3555666655544 3334333 488999988876443 55555555544
No 295
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=35.54 E-value=80 Score=30.23 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=32.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhccc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSL 57 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g 57 (465)
+++|+++-.|+.| ..+|..|++.||+|+++.... .+.+.+.|
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g 46 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRENG 46 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhCC
Confidence 4689999777766 457888999999999998865 44455555
No 296
>PRK06988 putative formyltransferase; Provisional
Probab=35.54 E-value=2.3e+02 Score=27.21 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC-----------CChhhhhcccCCCCCeeEEEccCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP-----------GNIPRIKSSLNLTPMADIIPLQIPHVDGLPP 78 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~-----------~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~ 78 (465)
.+||+|+..+ ...+...++|.++||+|..+.+. ...+.+.+.| +.+.... .
T Consensus 2 ~mkIvf~Gs~-----~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~g-----ip~~~~~--------~ 63 (312)
T PRK06988 2 KPRAVVFAYH-----NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHG-----IPVITPA--------D 63 (312)
T ss_pred CcEEEEEeCc-----HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcC-----CcEEccc--------c
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecc
Q 037721 79 GLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVF 144 (465)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~ 144 (465)
. ..+.+.+.+++.+||++|+-.+..-...-+-+.....++.++++
T Consensus 64 ~---------------------~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHps 108 (312)
T PRK06988 64 P---------------------NDPELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGS 108 (312)
T ss_pred C---------------------CCHHHHHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCc
No 297
>PRK11914 diacylglycerol kinase; Reviewed
Probab=35.45 E-value=70 Score=30.52 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.9
Q ss_pred ecccCChhhHHHHH----HhCCceeeccc
Q 037721 355 YVCHSGFSSVTEAV----ISDCQLVLLPL 379 (465)
Q Consensus 355 ~ItHgG~~s~~Eal----~~GvP~l~~P~ 379 (465)
+|.-||-||+.|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999987 34799999995
No 298
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=35.37 E-value=1.9e+02 Score=25.27 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.4
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLH 37 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r 37 (465)
.+++ +-.|+.||..=++.|-+.|.++
T Consensus 39 ~~~l-VvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTL-VVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEE-EEEcCCCcHHHHHHHHHHHHhh
Confidence 3444 4467899999999999999665
No 299
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=35.35 E-value=33 Score=28.21 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.3
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcc
Q 037721 20 AFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSS 56 (465)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~ 56 (465)
..-.+.-.+=++..|.++||+|++.+++.....++-+
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 3444556678899999999999999999877777653
No 300
>PRK13604 luxD acyl transferase; Provisional
Probab=35.23 E-value=76 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFF 44 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~ 44 (465)
++..+++++.+..++-..+..+|+.|.++|+.|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345677778887778777999999999999998775
No 301
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=35.14 E-value=79 Score=28.76 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=22.2
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 14 VMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
=+++..+.|-+ -..||++|.++||+|+++...
T Consensus 18 R~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 18 RGITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eeecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 34444444432 467889999999999998744
No 302
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=35.14 E-value=81 Score=26.86 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=20.8
Q ss_pred eeecccCC------hhhHHHHHHhCCceeeccc
Q 037721 353 GCYVCHSG------FSSVTEAVISDCQLVLLPL 379 (465)
Q Consensus 353 ~~~ItHgG------~~s~~Eal~~GvP~l~~P~ 379 (465)
+.+++|.| .+.+.||...++|||++.-
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33677766 3578899999999999863
No 303
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=35.07 E-value=1e+02 Score=31.49 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCC-CCCCchHHHHHHHHHHHhhH
Q 037721 24 ISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDS-TSEMTPHMAELLKQALDLMQ 102 (465)
Q Consensus 24 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 102 (465)
-.-++.|++.|.+.|+++. ++....+.+++.| +.+..+.- ..++|+-... ...+.......+.. .+-.
T Consensus 10 K~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~G-----I~v~~Vsk--~TgfPEil~GRVKTLHP~IhgGiLa--rr~~ 78 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL--STGGTAKLLAEAG-----VPVTEVSD--YTGFPEMMDGRVKTLHPKVHGGILA--RRGD 78 (511)
T ss_pred cccHHHHHHHHHHCCCEEE--EechHHHHHHHCC-----CeEEEeec--ccCCchhhCCccccCCchhhhhhhc--CCCc
Confidence 3457899999999999984 6778888899888 87777641 1344443321 22222222222111 1122
Q ss_pred HHHHHHHhhc---CCcEEEEcCC
Q 037721 103 PQIKTLLSQL---KPHFVFFDFT 122 (465)
Q Consensus 103 ~~l~~~l~~~---~pD~vi~D~~ 122 (465)
+. .+.+++. ..|+||++.+
T Consensus 79 ~~-~~~l~~~~I~~IDlVvvNLY 100 (511)
T TIGR00355 79 DD-DADLEEHGIEPIDLVVVNLY 100 (511)
T ss_pred hH-HHHHHHcCCCceeEEEEecc
Confidence 33 4445554 5699998874
No 304
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=34.91 E-value=3.2e+02 Score=24.12 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=60.0
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC----Ch--hhhhcccCCCCCeeEEEccCCCCCCCCCCCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG----NI--PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDS 82 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~----~~--~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (465)
.+--|.+.+..+.|-..-.+.+|-.-.-+|.+|.++-.-. .- ..+.+. ...+.|+.++ +++...
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---~~~v~~~~~~----~g~tw~--- 96 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---GLGVEFHGMG----EGFTWE--- 96 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---ccceeEEecC----CceeCC---
Confidence 3445778888899999888877777777788888774211 11 112221 1347777775 333221
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCc
Q 037721 83 TSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHY 124 (465)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~ 124 (465)
...... .............+.+.+.+.|+||.|-+++
T Consensus 97 -~~~~~~----d~~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 97 -TQDREA----DIAAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred -CcCcHH----HHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 111111 1123333445667788888999999998764
No 305
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=34.25 E-value=1.4e+02 Score=24.90 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=48.2
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCCChhhhhcccCCCCCeeEEEcc
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHG--VKVSFFSAPGNIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~ 69 (465)
.+..+|+||+.-+.+|+.-.+.+.+.+++.. |.+.+..-+-....++.......+++++.++
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECC
Confidence 4567899999999999999999999999874 7788777666665555543323568888886
No 306
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=34.13 E-value=92 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=33.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999887765
No 307
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.11 E-value=87 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=23.7
Q ss_pred cccceeecccCChhhHHHHHHh----CCceeeccc
Q 037721 349 HESVGCYVCHSGFSSVTEAVIS----DCQLVLLPL 379 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~----GvP~l~~P~ 379 (465)
.+++ +|+-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4556 9999999999999864 789888764
No 308
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.01 E-value=47 Score=31.74 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred cccceeecccCChhhHHHHHHh----CCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 349 HESVGCYVCHSGFSSVTEAVIS----DCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++ +|+=||-||++.|+.. ++|++.+-.. .+|. -. .++.+++.++++++++
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF---Lt----~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF---LT----EAYLNQLDEAIDQVLA 123 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc---cc----cCCHHHHHHHHHHHHc
Confidence 3455 9999999999999774 7898885420 1221 12 1567888888888886
No 309
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=33.94 E-value=1.1e+02 Score=30.09 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCC
Q 037721 285 VDQIKELAIGLEITGLPFFLVLNFP 309 (465)
Q Consensus 285 ~~~~~~i~~al~~~~~~~i~~~~~~ 309 (465)
|-++..++.+|...|+++.+.+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 4678899999999999988877665
No 310
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.82 E-value=79 Score=23.63 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=27.9
Q ss_pred cEEEEecCCCc--cCHHHHHHHHHHHHhCCCEEEEEe
Q 037721 11 LHVVMFPWFAF--GHISPFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 11 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~ 45 (465)
.+|+++|.... .+..-...+++.|++.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887743 466778999999999999998854
No 311
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.76 E-value=1.3e+02 Score=29.20 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=58.5
Q ss_pred CcEEEEecCCCcc-----CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCC--CCC
Q 037721 10 QLHVVMFPWFAFG-----HISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPG--LDS 82 (465)
Q Consensus 10 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~--~~~ 82 (465)
+..|+|.|..+.| -..-+..|++.|.++|.+|.++.++...+.++... +..+.. ...
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~----------------~~~~~~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIA----------------KGLPNAVILAG 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHH----------------HhcCCccccCC
Confidence 3567777773442 23468899999999999999988885555544332 000000 000
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEecch
Q 037721 83 TSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~~~ 145 (465)
.. ....+..+++ ..|++|+.- .+...+ |..+|.|+|.++...
T Consensus 239 k~----------------sL~e~~~li~--~a~l~I~~D--Sg~~Hl-AaA~~~P~I~iyg~t 280 (334)
T COG0859 239 KT----------------SLEELAALIA--GADLVIGND--SGPMHL-AAALGTPTIALYGPT 280 (334)
T ss_pred CC----------------CHHHHHHHHh--cCCEEEccC--ChHHHH-HHHcCCCEEEEECCC
Confidence 00 1122333333 458888755 345677 889999999987533
No 312
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.55 E-value=4.1e+02 Score=26.57 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=71.5
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccC-ChhhhhhcCCCceEEecc-------c
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTL-PPGFMDRVKDRGVVHTGW-------V 341 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~l-p~~~~~~~~~~nv~~~~~-------~ 341 (465)
+.+++.-.||.... ....++..|.+.|+++-++....- ...+ |..+. ...+..++...| .
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A--------~~fi~~~~l~-~l~~~~V~~~~~~~~~~~~~ 74 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAA--------KKFVTPLTFQ-ALSGNPVSTDLWDPAAEAAM 74 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhH--------HHHHhHHHHH-HhhCCceEccccccccCCCc
Confidence 44666666765432 334455666667777655544320 1111 11111 111112322212 2
Q ss_pred chHhhhccccceeecccCChhhHHH-------------HHHhCCceeecccc----cc---chhhHHHHhhhhcceEEee
Q 037721 342 QQQLILRHESVGCYVCHSGFSSVTE-------------AVISDCQLVLLPLK----GD---QFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 342 pq~~vL~~~~~~~~ItHgG~~s~~E-------------al~~GvP~l~~P~~----~D---Q~~na~~v~~~~G~G~~l~ 401 (465)
.+.++.+.+++ .+|.=+-.||+.. ++.+++|++++|-. ++ -..|..++.+. |+-+.-+
T Consensus 75 ~hi~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~ii~P 152 (399)
T PRK05579 75 GHIELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSR-GVEIIGP 152 (399)
T ss_pred chhhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHC-CCEEECC
Confidence 34444444443 3455554444332 36669999999942 22 34566667766 7766544
Q ss_pred ecC--------CCCccCHHHHHHHHHHhhc
Q 037721 402 RRD--------HDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 402 ~~~--------~~~~~~~~~l~~ai~~ll~ 423 (465)
... .+.-.+.++|.+.+.+.+.
T Consensus 153 ~~g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 153 ASGRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CCccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 211 1334677888888887774
No 313
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=33.28 E-value=3.7e+02 Score=24.36 Aligned_cols=104 Identities=8% Similarity=-0.001 Sum_probs=59.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc----cc-CC-----CCCeeEEEccCCCCCCCCCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS----SL-NL-----TPMADIIPLQIPHVDGLPPGLD 81 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~----~g-~~-----~~~~~~~~l~~~~~~~~~~~~~ 81 (465)
-+++.-.|+.|-..-.++++.+-+++|..+.|++.++..+.+.+ .| .+ ...+.+..... ........
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~---~~~~~~~~ 99 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFT---GGIGEAAE 99 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccc---cccccccc
Confidence 35667778999999999998877789999999998876654322 22 10 11344443321 01100000
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 82 STSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
. ... .... ....+.....+.+.+++.+++.||.|.+.
T Consensus 100 ~-~~~---~~~~-~~~~~~~~~~i~~~i~~~~~~~vVIDSls 136 (237)
T TIGR03877 100 R-EKY---VVKD-PTDVRELIDVLRQAIRDINAKRVVIDSVT 136 (237)
T ss_pred c-ccc---cccC-cccHHHHHHHHHHHHHHhCCCEEEEcChh
Confidence 0 000 0000 00122355666777777899999999965
No 314
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=33.16 E-value=55 Score=28.38 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.2
Q ss_pred ccCHHH-HHHHHHHHHh-CCCEEEEEeCCCChhhhhc
Q 037721 21 FGHISP-FVQLSNKLSL-HGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 21 ~GH~~p-~l~La~~L~~-rGh~V~~~~~~~~~~~i~~ 55 (465)
.||... .+.+.+.|.+ +||+|.++.++...+.+.-
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 378765 8899999984 6999999999988766553
No 315
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.09 E-value=53 Score=31.19 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=36.9
Q ss_pred ccccceeecccCChhhHHHHHH----hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|+=||-||++.++. +++|++.+-.. .+|.. . .++++++.++++++++
T Consensus 62 ~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl---~----~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 62 QQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFL---T----DLDPDNALQQLSDVLE 118 (292)
T ss_pred CCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCcc---c----ccCHHHHHHHHHHHHc
Confidence 34566 999999999999985 36787775421 11321 2 1567888889988887
No 316
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=32.72 E-value=1e+02 Score=27.68 Aligned_cols=95 Identities=19% Similarity=0.116 Sum_probs=57.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhhc----cc-CC-----CCCeeEEEccCCCCCCCCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH-GVKVSFFSAPGNIPRIKS----SL-NL-----TPMADIIPLQIPHVDGLPPGL 80 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~i~~----~g-~~-----~~~~~~~~l~~~~~~~~~~~~ 80 (465)
-+++.-.|+.|-..-.++++..-+++ |..|.|++..+..+.+.+ .| ++ ...+.+.+.. ... ...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~----~~~-~~~ 95 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF----PER-IGW 95 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS----GGG-ST-
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc----ccc-ccc
Confidence 46777778999999999999888788 999999998876654332 22 00 1124444443 000 000
Q ss_pred CCCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCc
Q 037721 81 DSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHY 124 (465)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~ 124 (465)
. ..........+.+.+++.+++.||.|.++.
T Consensus 96 ~-------------~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 96 S-------------PNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp T-------------SCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred c-------------ccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 0 011122345667778888999999998653
No 317
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=32.71 E-value=1.9e+02 Score=30.44 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=20.3
Q ss_pred ecccCCh------hhHHHHHHhCCceeecc
Q 037721 355 YVCHSGF------SSVTEAVISDCQLVLLP 378 (465)
Q Consensus 355 ~ItHgG~------~s~~Eal~~GvP~l~~P 378 (465)
+++|.|- +.+.+|.+.++|||++-
T Consensus 72 ~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 72 CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 7878774 47899999999999985
No 318
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.62 E-value=51 Score=29.55 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSA 46 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 46 (465)
|++.-+|+.|-....-.||++|.+++|+|.-.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 6667778999999999999999999999877654
No 319
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=32.50 E-value=2.1e+02 Score=24.26 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=64.2
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhcccccee
Q 037721 275 CSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGC 354 (465)
Q Consensus 275 vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~ 354 (465)
|-+||.+ +.+..+++...|+..|.++=+.+.. ....|+.+.+ |+-+- ....++.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S----------aHRtp~~~~~-----------~~~~a---~~~g~~v 56 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVS----------AHRTPELMLE-----------YAKEA---EERGIKV 56 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC----------cccCHHHHHH-----------HHHHH---HHCCCeE
Confidence 3355543 5566667777777777765433332 2334443321 11110 0111233
Q ss_pred ecccCChhhHHHHH---HhCCceeecccccc--chhhH-HHHhh--hhcce--EEeeecCCCCccCHHHHHHHHHHhhcc
Q 037721 355 YVCHSGFSSVTEAV---ISDCQLVLLPLKGD--QFLNS-KLVAG--DLKAG--VEVNRRDHDGHFGKEDIFKAVKTVMVD 424 (465)
Q Consensus 355 ~ItHgG~~s~~Eal---~~GvP~l~~P~~~D--Q~~na-~~v~~--~~G~G--~~l~~~~~~~~~~~~~l~~ai~~ll~~ 424 (465)
||+-+|...-+-.+ ..-+|+|.+|.... ....+ --+.+ . |+. ...-.. ..++.-+...|-. +.
T Consensus 57 iIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~-gvpvatv~I~~----~~nAa~~AaqIl~-~~- 129 (156)
T TIGR01162 57 IIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPS-GVPVATVAIGN----AGNAALLAAQILG-IK- 129 (156)
T ss_pred EEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCC-CCeeEEEEcCC----hhHHHHHHHHHHc-CC-
Confidence 77777754333332 33578888887431 11111 12223 2 422 221111 2456655555543 23
Q ss_pred cCCcchHHHHHHHHHHHHHHHc
Q 037721 425 VNKEPGASIRANQKWWREFLLN 446 (465)
Q Consensus 425 ~~~~~~~~~~~~a~~l~~~~~~ 446 (465)
|++++++.+..++..++
T Consensus 130 -----d~~l~~kl~~~r~~~~~ 146 (156)
T TIGR01162 130 -----DPELAEKLKEYRENQKE 146 (156)
T ss_pred -----CHHHHHHHHHHHHHHHH
Confidence 67888888777777653
No 320
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=32.49 E-value=82 Score=29.15 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=37.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
-+++.-.|+.|...-..+++...+++|..|.|++..+..+.+.+
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHH
Confidence 45667778999999999999999999999999999987765433
No 321
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=32.30 E-value=52 Score=32.69 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=33.9
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEcCCCccc----------ccccccccCCeeEEEe
Q 037721 94 LKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWL----------PGLVGSQLGIKTVNFS 142 (465)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~----------~~~~A~~~giP~v~~~ 142 (465)
+....+.....+.+.+++.+||++|+...+-.+ ..+ .++++||.+.-.
T Consensus 57 f~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV-~e~~~IP~vtaM 114 (431)
T TIGR01917 57 FGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAV-QDELGIKAFTAM 114 (431)
T ss_pred hhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHH-HHhhCCCeEEEe
Confidence 344455566788999999999999998743221 123 567999998765
No 322
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.19 E-value=53 Score=32.65 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=33.8
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEcCCCccc----------ccccccccCCeeEEEe
Q 037721 94 LKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWL----------PGLVGSQLGIKTVNFS 142 (465)
Q Consensus 94 ~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~----------~~~~A~~~giP~v~~~ 142 (465)
+....+.....+.+.+++.+||++|+...+-.+ ..+ .++++||.+.-.
T Consensus 57 f~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV-~e~~~IP~vt~M 114 (431)
T TIGR01918 57 FGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVV-QDKLNVPAVTSM 114 (431)
T ss_pred hhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHH-HHhhCCCeEEEe
Confidence 344455566788899999999999998743221 123 567999998765
No 323
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=32.17 E-value=1e+02 Score=30.38 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred ceeecccCChhhHHHHHHh------------C-----CceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHH
Q 037721 352 VGCYVCHSGFSSVTEAVIS------------D-----CQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDI 414 (465)
Q Consensus 352 ~~~~ItHgG~~s~~Eal~~------------G-----vP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l 414 (465)
.++++|.||..+.+-|+.+ | .|++.++-.. ++-+ .+..+.+|+|++.-..++++.++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 5678999998888777533 2 4566666433 3444 444445599977766655678999999
Q ss_pred HHHHHHhhc
Q 037721 415 FKAVKTVMV 423 (465)
Q Consensus 415 ~~ai~~ll~ 423 (465)
.++|++...
T Consensus 182 ~~~l~~~~~ 190 (373)
T PF00282_consen 182 EKALEKDIA 190 (373)
T ss_dssp HHHHHHHHH
T ss_pred hhhhccccc
Confidence 999988765
No 324
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.95 E-value=4.5e+02 Score=24.92 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCCh
Q 037721 283 LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGF 361 (465)
Q Consensus 283 ~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~ 361 (465)
.+...+..+.++++..|+.+++-+|...... .+... ....+.=.....+.|+++.++.|+|.
T Consensus 141 ~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~-------~~~~~----------~~~p~~~~~va~~fP~l~IVl~H~G~ 202 (293)
T COG2159 141 PDDPRLYPIYEAAEELGVPVVIHTGAGPGGA-------GLEKG----------HSDPLYLDDVARKFPELKIVLGHMGE 202 (293)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEeCCCCCCc-------ccccC----------CCCchHHHHHHHHCCCCcEEEEecCC
Confidence 4445578899999999999999777653211 11100 00011112334557899999999993
No 325
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=31.95 E-value=3.3e+02 Score=23.94 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=44.5
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCC--EEEEEeCC-CCh---hhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGV--KVSFFSAP-GNI---PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTS 84 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~V~~~~~~-~~~---~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (465)
+||+++..++.+-+ .++.+.+.+.++ +|.++.+. ... +.+++.| +.+..++. ..+..
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~g-----ip~~~~~~---~~~~~------ 63 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAG-----IPTFVLSL---KDFPS------ 63 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcC-----CCEEEECc---cccCc------
Confidence 36888777654444 456666766655 66665433 222 3344445 66655430 11110
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcC
Q 037721 85 EMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDF 121 (465)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~ 121 (465)
.....+.+.+++++.+||++|+-.
T Consensus 64 -------------~~~~~~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 64 -------------REAFDQAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred -------------hhhhhHHHHHHHHhcCCCEEEEeC
Confidence 001224567788889999987654
No 326
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=31.89 E-value=43 Score=32.26 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=23.5
Q ss_pred CCcEEE-EcCC-CcccccccccccCCeeEEEecchHH
Q 037721 113 KPHFVF-FDFT-HYWLPGLVGSQLGIKTVNFSVFSAI 147 (465)
Q Consensus 113 ~pD~vi-~D~~-~~~~~~~~A~~~giP~v~~~~~~~~ 147 (465)
.||+|| .|.. ...+..= |..+|||+|.+.-+.+-
T Consensus 152 ~Pd~viv~d~~~e~~AI~E-A~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQE-AQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHH-HHHcCCCEEEEeeCCCC
Confidence 699855 5653 3335566 88999999998765543
No 327
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=31.87 E-value=1.4e+02 Score=31.40 Aligned_cols=95 Identities=9% Similarity=0.091 Sum_probs=48.8
Q ss_pred chHhhhccccceeecccCC-h-hhHHHHHHhCCceeeccccc-----cchhhHHHHhhhhcceEEeeecCCCCccCHHHH
Q 037721 342 QQQLILRHESVGCYVCHSG-F-SSVTEAVISDCQLVLLPLKG-----DQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDI 414 (465)
Q Consensus 342 pq~~vL~~~~~~~~ItHgG-~-~s~~Eal~~GvP~l~~P~~~-----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l 414 (465)
++.+++.-++++.|-+-== | -|-+||++.|||.|.-=+.+ .+... . -... |+-+.-.+ + .+.++.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~-~~~~-GV~VvdR~-~----~n~~e~ 533 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-D-PEEY-GVYVVDRR-D----KNYDES 533 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--H-HGGG-TEEEE-SS-S----S-HHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-c-CcCC-cEEEEeCC-C----CCHHHH
Confidence 5667777677755554210 3 28899999999999866532 22222 1 1234 66544333 2 566666
Q ss_pred HHHHHHhhccc---CCcchHHHHHHHHHHHHHH
Q 037721 415 FKAVKTVMVDV---NKEPGASIRANQKWWREFL 444 (465)
Q Consensus 415 ~~ai~~ll~~~---~~~~~~~~~~~a~~l~~~~ 444 (465)
.+.|...|..- ..++-...|++++++++.+
T Consensus 534 v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 534 VNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 66665554300 0112345777777777766
No 328
>PLN02939 transferase, transferring glycosyl groups
Probab=31.86 E-value=98 Score=34.52 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=32.1
Q ss_pred CCCCCcEEEEecCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 6 AEADQLHVVMFPWF------AFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 6 ~~~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
++.+++||+|++.- ..|=-.-.-.|.++|++.||+|.++++...
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 44668999998652 222223456789999999999999998754
No 329
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=31.61 E-value=1.2e+02 Score=26.23 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=53.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh-----hhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCc
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI-----PRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMT 87 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~-----~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (465)
+++.-+.|.|-+.-+..+.+ ...+|+++.++..+... +.+++.| ..+..+. . ++--
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~-----~~v~~l~----~----gcic----- 63 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDG-----VPVVELN----N----GCIC----- 63 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT------EEEEEC----T----TTES-----
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccc-----eEEEEec----C----CCcc-----
Confidence 46666779999999999999 77789999999887653 3344444 6777775 2 1110
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhc--CCcEEEEcCCC
Q 037721 88 PHMAELLKQALDLMQPQIKTLLSQL--KPHFVFFDFTH 123 (465)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~vi~D~~~ 123 (465)
..........+.++.+.. +||.||.+...
T Consensus 64 -------c~~~~~~~~~l~~l~~~~~~~~d~IiIE~sG 94 (178)
T PF02492_consen 64 -------CTLRDDLVEALRRLLREYEERPDRIIIETSG 94 (178)
T ss_dssp -------S-TTS-HHHHHHHHCCCCHGC-SEEEEEEEC
T ss_pred -------cccHHHHHHHHHHHHHhcCCCcCEEEECCcc
Confidence 000111345667777777 89999988743
No 330
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=31.40 E-value=2.5e+02 Score=26.60 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=57.4
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccc
Q 037721 271 SVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHE 350 (465)
Q Consensus 271 ~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~ 350 (465)
.+.+|+.|.+.. ..-+.++.|++.|...-++- +...+-+|...++..+
T Consensus 194 D~tiiA~G~mv~----~al~AA~~L~~~GIsa~Vi~----------------------------m~tIKPiD~~~i~~~A 241 (312)
T COG3958 194 DLTIIATGVMVA----EALEAAEILKKEGISAAVIN----------------------------MFTIKPIDEQAILKAA 241 (312)
T ss_pred ceEEEecCcchH----HHHHHHHHHHhcCCCEEEEe----------------------------cCccCCCCHHHHHHHH
Confidence 388888888762 23334555777777654442 1111333333333332
Q ss_pred -cceeecc------cCChhh-HHHHHHhCCc--eeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHH
Q 037721 351 -SVGCYVC------HSGFSS-VTEAVISDCQ--LVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKT 420 (465)
Q Consensus 351 -~~~~~It------HgG~~s-~~Eal~~GvP--~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ 420 (465)
..+.+|| +||.|| +.|.++-.-| |.-+.+- |++..+.+..++ ++.- .++++.|.+.+.+
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp-~~fg~sg~~~~L------l~~y----gl~~~~I~~~v~~ 310 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVP-DTFGRSGKADEL------LDYY----GLDPESIAARVLE 310 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcCCcceEEecCC-chhccccchHHH------HHHh----CCCHHHHHHHHHh
Confidence 1122333 789876 5666665555 3222221 666555555444 4444 3788888887766
Q ss_pred h
Q 037721 421 V 421 (465)
Q Consensus 421 l 421 (465)
+
T Consensus 311 ~ 311 (312)
T COG3958 311 L 311 (312)
T ss_pred h
Confidence 5
No 331
>PRK05595 replicative DNA helicase; Provisional
Probab=31.39 E-value=1.6e+02 Score=29.78 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=33.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLS-LHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~i 53 (465)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-....+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45677789999999999998775 579999999988665443
No 332
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.34 E-value=97 Score=24.57 Aligned_cols=40 Identities=13% Similarity=-0.194 Sum_probs=33.2
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
++..+.++-.|.....-++..|.+.|++|.+.......+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~ 41 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEE 41 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHH
Confidence 5677778899999999999999999999999876544433
No 333
>PRK07206 hypothetical protein; Provisional
Probab=31.33 E-value=1.1e+02 Score=30.68 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=23.6
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+++++-.... ...++++++++|+++.+++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 5777665433 3468999999999998887664
No 334
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=31.31 E-value=64 Score=27.68 Aligned_cols=45 Identities=11% Similarity=0.193 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEcCCCccc---------------ccccccccCCeeEEEecch
Q 037721 100 LMQPQIKTLLSQLKPHFVFFDFTHYWL---------------PGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 100 ~~~~~l~~~l~~~~pD~vi~D~~~~~~---------------~~~~A~~~giP~v~~~~~~ 145 (465)
.....+.+++++++||.++.+..++.. ..+ +...|+|++-+.|..
T Consensus 48 ~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la-~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 48 QIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILA-AAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHH-HHHcCCCEEEECHHH
Confidence 355788999999999998887644331 124 677889988876543
No 335
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.30 E-value=65 Score=30.81 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=38.1
Q ss_pred ccccceeecccCChhhHHHHHHh----CCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 348 RHESVGCYVCHSGFSSVTEAVIS----DCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
..+++ +|+=||-||++.|+.. ++|++.+... .+|...+ ..++++.++++++++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~-------~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE-------AEAEDLDEAVERVVD 127 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc-------CCHHHHHHHHHHHHc
Confidence 34566 9999999999999764 8898886531 2232222 567888888888887
No 336
>PRK11823 DNA repair protein RadA; Provisional
Probab=31.25 E-value=74 Score=32.32 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
+++.--|+.|-..-+++++..++++|.+|.|++.++..+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45566679999999999999999899999999988766554
No 337
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=31.22 E-value=4e+02 Score=25.43 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC--------------hhhhhcccCCCCCeeEEEccCCCCCCC
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN--------------IPRIKSSLNLTPMADIIPLQIPHVDGL 76 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~--------------~~~i~~~g~~~~~~~~~~l~~~~~~~~ 76 (465)
+||+|+..+ .-.+...+.|.++||++..+.+... .+.+++.+ +.+....
T Consensus 1 mkIvf~G~~-----~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~-----Ip~~~~~------- 63 (309)
T PRK00005 1 MRIVFMGTP-----EFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHG-----IPVLQPE------- 63 (309)
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcC-----CCEECcC-------
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccc-cccccccCCeeEEEecc
Q 037721 77 PPGLDSTSEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLP-GLVGSQLGIKTVNFSVF 144 (465)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~-~~~A~~~giP~v~~~~~ 144 (465)
.- ....+.+.+++.+||++|+=.+..-.. .+ -+.....++.++++
T Consensus 64 -~~---------------------~~~~~~~~l~~~~~Dliv~~~~~~iip~~i-l~~~~~g~iNiHps 109 (309)
T PRK00005 64 -KL---------------------RDPEFLAELAALNADVIVVVAYGQILPKAV-LDIPRLGCINLHAS 109 (309)
T ss_pred -CC---------------------CCHHHHHHHHhcCcCEEEEehhhcccCHHH-HhcCCCCEEEEeCc
No 338
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.22 E-value=72 Score=30.28 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=38.6
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh--hhcccCCCCCeeEEEcc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR--IKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~--i~~~g~~~~~~~~~~l~ 69 (465)
-.+|+++-+++|||.. |.-|+..|.+|++...+...+. ..+.| +++.++.
T Consensus 18 gK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~dG-----f~V~~v~ 69 (338)
T COG0059 18 GKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKEDG-----FKVYTVE 69 (338)
T ss_pred CCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHhcC-----CEeecHH
Confidence 3589999999999976 4568899999999988876643 44445 7776664
No 339
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.98 E-value=2.5e+02 Score=24.72 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=40.5
Q ss_pred cE-EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhccc----CC--CCCeeEEEcc
Q 037721 11 LH-VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSL----NL--TPMADIIPLQ 69 (465)
Q Consensus 11 ~~-il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g----~~--~~~~~~~~l~ 69 (465)
.+ |+|+..++.-|-.-+..+++.|++.|..|.+++-....+-.++.. .+ .++-.++.+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeC
Confidence 35 777888888887778899999999999999988664433222221 11 2346677776
No 340
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=30.91 E-value=96 Score=24.15 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCcEEEEcCCCccc---ccccccccCCeeE
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYWL---PGLVGSQLGIKTV 139 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~~---~~~~A~~~giP~v 139 (465)
..+.++.++.++|+||...-.+-. ... .+..|||++
T Consensus 52 ~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~-l~~~gi~vf 90 (100)
T PF02844_consen 52 EELADFAKENKIDLVVVGPEAPLVAGLADA-LRAAGIPVF 90 (100)
T ss_dssp HHHHHHHHHTTESEEEESSHHHHHTTHHHH-HHHTT-CEE
T ss_pred HHHHHHHHHcCCCEEEECChHHHHHHHHHH-HHHCCCcEE
Confidence 455667778899999987643333 345 556788866
No 341
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.90 E-value=94 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=29.4
Q ss_pred cEEEEec--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 11 LHVVMFP--WFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 11 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
.|++.+. -++-|-..=...||..|+++|++|.++=.+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4444433 3588899999999999999999998875443
No 342
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=30.75 E-value=79 Score=32.21 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=34.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
+++.--|+.|-..-++.++..+.++|..|.|++.++..+.+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 45556679999999999999999999999999988766554
No 343
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.66 E-value=85 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=31.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
+++|.+-..||-|-+..|+.=|+.|.++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 67899999999999999999999999999999987644
No 344
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=30.54 E-value=8.3 Score=21.11 Aligned_cols=17 Identities=6% Similarity=0.323 Sum_probs=13.5
Q ss_pred ChhhHHHHHHhCCceee
Q 037721 360 GFSSVTEAVISDCQLVL 376 (465)
Q Consensus 360 G~~s~~Eal~~GvP~l~ 376 (465)
|.|+++..++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67899999999988765
No 345
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.45 E-value=76 Score=29.79 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=36.8
Q ss_pred HhhhccccceeecccCChhhHHHHHH----hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHH
Q 037721 344 QLILRHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVK 419 (465)
Q Consensus 344 ~~vL~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~ 419 (465)
.++...+++ +|+=||-||++.++. .++|++.+-.. .+|...+ .+++++.+.+.
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~~-------~~~~~~~~~l~ 93 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLTD-------IDPKNAYEQLE 93 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccccc-------CCHHHHHHHHH
Confidence 444445666 999999999998755 36888875421 1332222 46667777777
Q ss_pred Hhhc
Q 037721 420 TVMV 423 (465)
Q Consensus 420 ~ll~ 423 (465)
++++
T Consensus 94 ~~~~ 97 (272)
T PRK02231 94 ACLE 97 (272)
T ss_pred HHHh
Confidence 7665
No 346
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.24 E-value=1.3e+02 Score=24.91 Aligned_cols=42 Identities=12% Similarity=-0.054 Sum_probs=36.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
.+|++-...+-+|-.----++..|.+.|++|+.....-..+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~ 43 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEE 43 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 478999999999999999999999999999999987655443
No 347
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=30.03 E-value=2.1e+02 Score=32.05 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=60.3
Q ss_pred cccchH---hhhccccceeecc---cCChh-hHHHHHHhCC---ceeeccccccchhhHHHHhhhhc-ceEEeeecCCCC
Q 037721 339 GWVQQQ---LILRHESVGCYVC---HSGFS-SVTEAVISDC---QLVLLPLKGDQFLNSKLVAGDLK-AGVEVNRRDHDG 407 (465)
Q Consensus 339 ~~~pq~---~vL~~~~~~~~It---HgG~~-s~~Eal~~Gv---P~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~ 407 (465)
..+|+. +++..+++ ++- .-|+| ...|+++++. -+++++-+ -.-|. .+ | -|+.++.
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa~---~L-~~~AllVNP----- 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAAQ---SL-GAGAILVNP----- 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchHH---Hh-CCceEEECC-----
Confidence 335554 45556666 443 34776 5569999944 12222311 11122 22 3 4566776
Q ss_pred ccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 037721 408 HFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKA 463 (465)
Q Consensus 408 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 463 (465)
.+.++++++|.+.|. ...++-+++.+++.+.+... ....-++.|++.|.+
T Consensus 512 -~D~~~vA~AI~~AL~----M~~~Er~~r~~~~~~~V~~~-d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 512 -WNITEVAASIAQALN----MPEEEREKRHRHNFMHVTTH-TAQEWAETFVSELND 561 (934)
T ss_pred -CCHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhcccC-CHHHHHHHHHHHHHH
Confidence 489999999999885 11556666666666666544 344446666666553
No 348
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=29.65 E-value=4.7e+02 Score=24.38 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=28.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
++||+++.+++...-. ..+.+|.+.|+++.++....
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~ 38 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIND 38 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecc
Confidence 4689999998876543 55788989999999887643
No 349
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.39 E-value=80 Score=29.89 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=29.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhccc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSL 57 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g 57 (465)
||+|+-.+..| ..+|..|++.||+|+++..+...+.+.+.|
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g 42 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRERG 42 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHhCC
Confidence 67788766655 467888999999999998744344444444
No 350
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=29.34 E-value=94 Score=28.86 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=29.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
.|.+.-=||-|-..-...||..|+++|++|.++=.+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 344554579999999999999999999999988433
No 351
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.33 E-value=91 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=29.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 45 (465)
.|.+..=||-|-..-.+.||..|+++|++|.++=
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4677766899999999999999999999999883
No 352
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=29.22 E-value=89 Score=29.00 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=30.9
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
.|.|..=||-|...-...||..|+++|++|.++=.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 466776689999999999999999999999888444
No 353
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=29.20 E-value=89 Score=26.01 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=29.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEc
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLN 307 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~ 307 (465)
..+|++++||......+.++++++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 458999999998888899999998874 3577776654
No 354
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=29.14 E-value=1.5e+02 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.7
Q ss_pred hHhhhccccceeecccCC-----hhhHHHH---HHhCCceeecc
Q 037721 343 QQLILRHESVGCYVCHSG-----FSSVTEA---VISDCQLVLLP 378 (465)
Q Consensus 343 q~~vL~~~~~~~~ItHgG-----~~s~~Ea---l~~GvP~l~~P 378 (465)
-.-++..+++ +|-.-| ||+.+.| ++.|+|+|++-
T Consensus 66 T~~li~~aDv--VVvrFGekYKQWNaAfDAg~a~AlgKplI~lh 107 (141)
T PF11071_consen 66 TRTLIEKADV--VVVRFGEKYKQWNAAFDAGYAAALGKPLITLH 107 (141)
T ss_pred HHHHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 3456778888 888888 8888875 77899998864
No 355
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=29.08 E-value=62 Score=28.43 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCc--EEEEcCCC-cccccccccccCCeeEEEecchHHHH
Q 037721 103 PQIKTLLSQLKPH--FVFFDFTH-YWLPGLVGSQLGIKTVNFSVFSAISQ 149 (465)
Q Consensus 103 ~~l~~~l~~~~pD--~vi~D~~~-~~~~~~~A~~~giP~v~~~~~~~~~~ 149 (465)
..+.+++++..++ ++|..++. ++|..+ |+.+|+|.|.+.|+.....
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~L-a~~~~~~avLiNPav~p~~ 95 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYL-AERYGLPAVLINPAVRPYE 95 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHH-HHHhCCCEEEEcCCCCHHH
Confidence 4567777777655 56666543 335567 9999999999887655443
No 356
>PRK13337 putative lipid kinase; Reviewed
Probab=28.97 E-value=1.7e+02 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.4
Q ss_pred eecccCChhhHHHHHHh------CCceeeccc
Q 037721 354 CYVCHSGFSSVTEAVIS------DCQLVLLPL 379 (465)
Q Consensus 354 ~~ItHgG~~s~~Eal~~------GvP~l~~P~ 379 (465)
.+|.-||-||+.|++.. ..|+-++|.
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 39999999999999862 357888995
No 357
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=28.87 E-value=1e+02 Score=29.27 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=33.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
+|+|.-=||-|-..-.+.||..|+++|++|.++=.+..
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 58888889999999999999999999999998855443
No 358
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=28.75 E-value=1.1e+02 Score=27.13 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=17.8
Q ss_pred cEEEEecCCCccC--HHHHHHHHHHHHh
Q 037721 11 LHVVMFPWFAFGH--ISPFVQLSNKLSL 36 (465)
Q Consensus 11 ~~il~~~~~~~GH--~~p~l~La~~L~~ 36 (465)
+||++.-|+-+|+ .||.-.+++.|..
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 4788877764444 5999999999975
No 359
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.56 E-value=2.8e+02 Score=23.74 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=64.5
Q ss_pred chHhhhc-cccceeecccCC---hhhHHHHHHhCCceeeccc--cccchhhHHHHhhhhcceEEeeecCCCCccCHHHHH
Q 037721 342 QQQLILR-HESVGCYVCHSG---FSSVTEAVISDCQLVLLPL--KGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIF 415 (465)
Q Consensus 342 pq~~vL~-~~~~~~~ItHgG---~~s~~Eal~~GvP~l~~P~--~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~ 415 (465)
+|.+|+. ||++..-+--.| ..|..|-..+|.=-+. |. ..=|..|+.+.++. |.=..+--+. .+.++|.
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rF-gfPfI~aVkg----~~k~~Il 137 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYVERF-GFPFIIAVKG----NTKDTIL 137 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhc-CCceEEeecC----CCHHHHH
Confidence 4555444 777632222222 3578888888876654 21 11267899999998 9987776553 7899999
Q ss_pred HHHHHhhcccCCcchHHHHHHHHHHHHHHH
Q 037721 416 KAVKTVMVDVNKEPGASIRANQKWWREFLL 445 (465)
Q Consensus 416 ~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~ 445 (465)
++..+=|. -++..++++.+.++.+..+
T Consensus 138 ~a~~~Rl~---n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 138 AAFERRLD---NDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHhc---ccHHHHHHHHHHHHHHHHH
Confidence 99999887 4556778887777776654
No 360
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=28.49 E-value=68 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=35.8
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
..||++.-.|+.| ..-.+.+.+.|.+.|++|.++.++.....+..
T Consensus 3 ~k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 3478777666544 46689999999999999999999988777654
No 361
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=28.48 E-value=1.4e+02 Score=25.57 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=21.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhc
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEIT 298 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~ 298 (465)
+..+|+++||......+.+...+..|...
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 44799999998765667777777777653
No 362
>PRK10037 cell division protein; Provisional
Probab=28.38 E-value=88 Score=28.75 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=29.3
Q ss_pred EEEecC-CCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 13 VVMFPW-FAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 13 il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
|.|... ||-|-..-...||..|+++|++|.++=.+
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 555544 79999999999999999999999998433
No 363
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=28.34 E-value=63 Score=33.46 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=35.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
-+++.-.++.|-..-..+++...+..|..|.|++.....+.+
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i 316 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQL 316 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHH
Confidence 355666679999999999999999999999999988766544
No 364
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=28.29 E-value=52 Score=31.24 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=34.4
Q ss_pred CcEEEEecCCCccCH--------HHHHHHHHHHHhCCCEEEEEeCCCChhhhhcc
Q 037721 10 QLHVVMFPWFAFGHI--------SPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSS 56 (465)
Q Consensus 10 ~~~il~~~~~~~GH~--------~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~ 56 (465)
..+|++++..-..|. .-.+.||++|.+.|.+|+++|.+.....+++.
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 345666554433333 34688999999999999999999888777665
No 365
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.27 E-value=86 Score=31.31 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=37.0
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
+..||++.-.++. ...=...+.+.|.+.|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4567888777755 555789999999999999999999987777654
No 366
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.18 E-value=71 Score=24.96 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=21.1
Q ss_pred CccCH--HHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 20 AFGHI--SPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 20 ~~GH~--~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
...++ +|.+.|+++|.++|.+|.+.=+.-.....
T Consensus 10 n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 10 NTDDIRESPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp TSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CCcccccCHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 44455 79999999999999998875444333333
No 367
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.10 E-value=4.4e+02 Score=27.87 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=29.1
Q ss_pred ccCChhhHHHHHHhC--Cce--eeccc-cccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 357 CHSGFSSVTEAVISD--CQL--VLLPL-KGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 357 tHgG~~s~~Eal~~G--vP~--l~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
.+||+|+..-..... +|+ +.+|- +.+........++. .++++.|.++|.+++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~--------------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRN--------------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHH--------------CcCHHHHHHHHHHHh
Confidence 579998866665543 333 33433 33332222322322 278888888887765
No 368
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.94 E-value=2.9e+02 Score=29.05 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.9
Q ss_pred eecccCChh------hHHHHHHhCCceeecc
Q 037721 354 CYVCHSGFS------SVTEAVISDCQLVLLP 378 (465)
Q Consensus 354 ~~ItHgG~~------s~~Eal~~GvP~l~~P 378 (465)
.+++|.|-| .+.||...++|||++-
T Consensus 81 v~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 81 VVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred EEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 388888855 6889999999999984
No 369
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=27.87 E-value=1.3e+02 Score=26.51 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=28.9
Q ss_pred ccCHH-HHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEcc
Q 037721 21 FGHIS-PFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 21 ~GH~~-p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~ 69 (465)
.|=+- -.=.|+..|.++||+|++.|.....+.-... -.+++...+|
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~---y~gv~l~~i~ 62 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE---YNGVRLVYIP 62 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc---cCCeEEEEeC
Confidence 44443 3446778888899999999987554322221 1237777776
No 370
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.81 E-value=70 Score=30.22 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=28.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeC-CCChhhhhccc
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSA-PGNIPRIKSSL 57 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~-~~~~~~i~~~g 57 (465)
+|.++-.|..| ..+|..|.+.||+|+++.. +...+.+.+.|
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g 43 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNENG 43 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHHcC
Confidence 57777766555 5678889999999999987 33333444333
No 371
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.69 E-value=1.3e+02 Score=25.87 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 45 (465)
.+..+|++++.++ ..=-=-+.+|+.|.++|++|+++.
T Consensus 23 ~~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEE
Confidence 3456788888774 222356888999999999999944
No 372
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.68 E-value=60 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=34.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhh
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIK 54 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~ 54 (465)
...+++.-.+|.|-..=..++++++.++|+.|.|+......+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 346888888899999999999999999999999998765444443
No 373
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=27.65 E-value=84 Score=32.18 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=37.1
Q ss_pred cccceeecccCChhhHHHHHHh----CCceeeccccccchhhHHHHhhhhc-ceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 349 HESVGCYVCHSGFSSVTEAVIS----DCQLVLLPLKGDQFLNSKLVAGDLK-AGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++ +|+=||-||++.|+.. ++|++.+- . | +|.. . .+..+++.++|.++++
T Consensus 262 ~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~-G~LGFL---t----~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------------M-GSLGFM---T----PFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------------C-CCccee---c----ccCHHHHHHHHHHHHc
Confidence 4555 9999999999999774 56777653 1 2 4432 2 1678889999999887
No 374
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=27.60 E-value=1.9e+02 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 28 VQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 28 l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
..+|..++++|++|.++..+.....-
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l~ 28 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSLS 28 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 46888999999999999988765443
No 375
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=27.54 E-value=4.1e+02 Score=23.01 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=48.6
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC---h-h--hhhcccCCCCCeeEEEccCCCCCCCCCCCCCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN---I-P--RIKSSLNLTPMADIIPLQIPHVDGLPPGLDST 83 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~---~-~--~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (465)
+-.|.+.+..+.|-.+..+.+|-.-+-+|.+|.++-.-.. . + .+++. +++++.... .++...
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l----~~~~~~~~g----~~f~~~---- 70 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL----PNVEIERFG----KGFVWR---- 70 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG----T--EEEE------TT--------
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC----CeEEEEEcC----Cccccc----
Confidence 3457888889999999877777777777888888853322 1 1 12222 346666664 222111
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCC
Q 037721 84 SEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTH 123 (465)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~ 123 (465)
.+.. .. .............+.+.+...|+||-|-..
T Consensus 71 ~~~~--~~--~~~~~~~~~~~a~~~i~~~~~dlvILDEi~ 106 (172)
T PF02572_consen 71 MNEE--EE--DRAAAREGLEEAKEAISSGEYDLVILDEIN 106 (172)
T ss_dssp GGGH--HH--HHHHHHHHHHHHHHHTT-TT-SEEEEETHH
T ss_pred CCCc--HH--HHHHHHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 1111 11 123333344566777777889999999854
No 376
>PRK08322 acetolactate synthase; Reviewed
Probab=27.41 E-value=87 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.0
Q ss_pred eecccCCh------hhHHHHHHhCCceeecc
Q 037721 354 CYVCHSGF------SSVTEAVISDCQLVLLP 378 (465)
Q Consensus 354 ~~ItHgG~------~s~~Eal~~GvP~l~~P 378 (465)
++++|.|- +.+.||...++|+|++-
T Consensus 66 v~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 66 VCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 38888774 58899999999999985
No 377
>PRK09620 hypothetical protein; Provisional
Probab=27.41 E-value=90 Score=28.44 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 037721 27 FVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 27 ~l~La~~L~~rGh~V~~~~~~ 47 (465)
-..||++|.++|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 368899999999999998754
No 378
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=27.39 E-value=1.4e+02 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 45 (465)
+++...++.|-..-...|+..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666789999999999999999999998876
No 379
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.37 E-value=45 Score=30.73 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=21.9
Q ss_pred ccceeecccCChhhHHHHHHh----CCceeecc
Q 037721 350 ESVGCYVCHSGFSSVTEAVIS----DCQLVLLP 378 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~~----GvP~l~~P 378 (465)
+++ +|+-||-||++.++.. ++|++.+-
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 455 9999999999988664 68888765
No 380
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.32 E-value=93 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.9
Q ss_pred eecccCC------hhhHHHHHHhCCceeecc
Q 037721 354 CYVCHSG------FSSVTEAVISDCQLVLLP 378 (465)
Q Consensus 354 ~~ItHgG------~~s~~Eal~~GvP~l~~P 378 (465)
++++|.| .+.+.+|.+.++|||++-
T Consensus 66 v~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 66 VCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3888877 458899999999999984
No 381
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=27.28 E-value=4.3e+02 Score=24.93 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCEEEEEeCCCChh
Q 037721 28 VQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 28 l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
-+|...|.+.||+|++++-.....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~~ 35 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPKA 35 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcch
Confidence 367888999999999999765443
No 382
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=27.23 E-value=49 Score=30.43 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 25 SPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 25 ~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
.-+-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 345678999999999999999876
No 383
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=27.19 E-value=4e+02 Score=23.85 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCcEEEEcCCC-cccccccccccCCeeEEEec
Q 037721 104 QIKTLLSQLKPHFVFFDFTH-YWLPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 104 ~l~~~l~~~~pD~vi~D~~~-~~~~~~~A~~~giP~v~~~~ 143 (465)
.+.+.+++.+||++|.-.+. .-...+ -+.+...++.+++
T Consensus 69 ~~~~~l~~~~~Dliv~agy~~il~~~~-l~~~~~~~iNiHp 108 (207)
T PLN02331 69 ELVDALRGAGVDFVLLAGYLKLIPVEL-VRAYPRSILNIHP 108 (207)
T ss_pred HHHHHHHhcCCCEEEEeCcchhCCHHH-HhhCCCCEEEEeC
Confidence 45666788899998875532 222233 3344444566554
No 384
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=26.96 E-value=59 Score=29.51 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 23 HISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 23 H~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
|+.-|-..|.+|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788899999999999999998773
No 385
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=26.90 E-value=1.7e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=20.8
Q ss_pred eecccCC------hhhHHHHHHhCCceeeccc
Q 037721 354 CYVCHSG------FSSVTEAVISDCQLVLLPL 379 (465)
Q Consensus 354 ~~ItHgG------~~s~~Eal~~GvP~l~~P~ 379 (465)
.+++|+| .+.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3788866 3578899999999999863
No 386
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=26.35 E-value=1.8e+02 Score=29.97 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEcc
Q 037721 24 ISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 24 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~ 69 (465)
=.-++.||+.|.+.|+++. ++....+.+++.| +.+..+.
T Consensus 14 K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~G-----I~v~~V~ 52 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL--STGGTAKLLAEAG-----IPVTEVS 52 (513)
T ss_pred cccHHHHHHHHHHCCCEEE--EcchHHHHHHHCC-----CeeEEee
Confidence 4558899999999999984 6788888899988 7777764
No 387
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=26.31 E-value=4.7e+02 Score=28.08 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=23.5
Q ss_pred HHHHHhhcCCcEEEEcCCCcc-cccccccccCCeeEEEecch
Q 037721 105 IKTLLSQLKPHFVFFDFTHYW-LPGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 105 l~~~l~~~~pD~vi~D~~~~~-~~~~~A~~~giP~v~~~~~~ 145 (465)
..+.+++.+||++|+-.+..- -..+ -+.....++.++++.
T Consensus 67 ~~~~l~~~~~D~iv~~~~~~ii~~~i-l~~~~~g~iN~H~sl 107 (660)
T PRK08125 67 WVERIRELAPDVIFSFYYRNLLSDEI-LQLAPAGAFNLHGSL 107 (660)
T ss_pred HHHHHHhcCCCEEEEccccccCCHHH-HhhcCCCEEEEeCCc
Confidence 345677789999886543211 1223 344455578888773
No 388
>PRK05973 replicative DNA helicase; Provisional
Probab=26.29 E-value=1.2e+02 Score=27.75 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=35.2
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
+++...||.|-..-.+.++...+++|..|.|++.+...+.+
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 56677789999999999999998899999999988776543
No 389
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.24 E-value=57 Score=33.80 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEe
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFS 142 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~ 142 (465)
..+.++|++.+||+||.+. +...+ |+++|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---~er~i-a~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---MERHI-GKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---hhhHH-HHHhCCCEEEee
Confidence 3456777778999999987 34556 899999998764
No 390
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.22 E-value=1.3e+02 Score=27.56 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCCCCCcEEEE-ecCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 037721 5 SAEADQLHVVM-FPWFAFGHISPFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 5 ~~~~~~~~il~-~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 45 (465)
.+.....+|++ .|.| =-=..-+-.....|+++||+|++++
T Consensus 5 ~~~~~~~~vL~v~aHP-DDe~~g~ggtla~~~~~G~~V~v~~ 45 (237)
T COG2120 5 PPMLDPLRVLVVFAHP-DDEEIGCGGTLAKLAARGVEVTVVC 45 (237)
T ss_pred cccccCCcEEEEecCC-cchhhccHHHHHHHHHCCCeEEEEE
Confidence 34455667765 4444 1112334455566789999999997
No 391
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.21 E-value=86 Score=29.28 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=35.5
Q ss_pred ccceeecccCChhhHHHHHHh-----CCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 350 ESVGCYVCHSGFSSVTEAVIS-----DCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~~-----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+++ +|+=||-||++.++.. .+|++.+-..+ .+|.. . ..+.+++.++++++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL---~----~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY---C----DFHIDDLDKMIQAITK 96 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc---c----cCCHHHHHHHHHHHHc
Confidence 455 9999999999999874 56766543200 22222 2 2677888888888886
No 392
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.14 E-value=63 Score=32.54 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEe
Q 037721 103 PQIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFS 142 (465)
Q Consensus 103 ~~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~ 142 (465)
..+.+++++.+||++|.... ...+ |+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~---~~~~-a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK---EKYV-FQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc---chhh-hhhcCCCeEeCC
Confidence 45677788889999999874 5567 999999997653
No 393
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=25.97 E-value=1.4e+02 Score=24.61 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=33.4
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 14 VMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
+++..+..--+.|.+-++...++.|++|+++.+--....+.+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 456667888899999999999999999999987544444443
No 394
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=25.95 E-value=90 Score=26.54 Aligned_cols=46 Identities=7% Similarity=0.190 Sum_probs=33.0
Q ss_pred HhhHHHHHHHHhhcCCcEEEEcCCCcc---------------cccccccccCCeeEEEecch
Q 037721 99 DLMQPQIKTLLSQLKPHFVFFDFTHYW---------------LPGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 99 ~~~~~~l~~~l~~~~pD~vi~D~~~~~---------------~~~~~A~~~giP~v~~~~~~ 145 (465)
....+.+.+++++++||.+..+..++. ...+ +...|+|++-+.|..
T Consensus 43 ~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla-~~~~~ipv~Ey~P~~ 103 (156)
T TIGR00228 43 KLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVA-AVNQELPVFEYAARQ 103 (156)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHH-HHHcCCCEEEECHHH
Confidence 346688899999999999887764442 1234 678888888776643
No 395
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=25.72 E-value=3.6e+02 Score=22.20 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=26.3
Q ss_pred hHhhhccccceeecccCC-----hhhHHHH---HHhCCceeecc
Q 037721 343 QQLILRHESVGCYVCHSG-----FSSVTEA---VISDCQLVLLP 378 (465)
Q Consensus 343 q~~vL~~~~~~~~ItHgG-----~~s~~Ea---l~~GvP~l~~P 378 (465)
-..++..+++ +|-.-| ||+.+.| ++.|+|+|++-
T Consensus 69 T~~li~~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~lh 110 (144)
T TIGR03646 69 TRKLIEKADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIILR 110 (144)
T ss_pred HHHHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 3456777888 888888 8888875 77899998864
No 396
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=25.70 E-value=5.4e+02 Score=24.00 Aligned_cols=118 Identities=12% Similarity=0.042 Sum_probs=60.9
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCch-
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTP- 88 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 88 (465)
...|-+.-.|+-|--.-.-.|++.|+++|++|-+++-++...+-..+ -+.+.++...+.. + +.-+ ....+.
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA-lLGDRiRM~~~~~---d--~~vf--IRS~atR 100 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA-LLGDRIRMQELSR---D--PGVF--IRSMATR 100 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC----SS--GGGCHHHHT---S--TTEE--EEEE---
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc-ccccHHHhcCcCC---C--CCEE--EeecCcC
Confidence 44567777789999999999999999999999999866554332111 0122333322210 0 0000 000000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcccc---cccccccCCeeEEE
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWLP---GLVGSQLGIKTVNF 141 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~~---~~~A~~~giP~v~~ 141 (465)
.....+.. .......+++..++|+||.+..- .++ .+ ++....=++++
T Consensus 101 G~lGGls~----~t~~~v~ll~aaG~D~IiiETVG-vGQsE~~I-~~~aD~~v~v~ 150 (266)
T PF03308_consen 101 GSLGGLSR----ATRDAVRLLDAAGFDVIIIETVG-VGQSEVDI-ADMADTVVLVL 150 (266)
T ss_dssp SSHHHHHH----HHHHHHHHHHHTT-SEEEEEEES-SSTHHHHH-HTTSSEEEEEE
T ss_pred CCCCCccH----hHHHHHHHHHHcCCCEEEEeCCC-CCccHHHH-HHhcCeEEEEe
Confidence 01111111 23456677888899999999843 333 34 55556555554
No 397
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=25.69 E-value=77 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=27.6
Q ss_pred EEEecCCCccCHH-HHHHHHHHHHhCCCEEEEEe
Q 037721 13 VVMFPWFAFGHIS-PFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 13 il~~~~~~~GH~~-p~l~La~~L~~rGh~V~~~~ 45 (465)
+++.+.|++=|+. |...|+..|++.|.++..++
T Consensus 36 ~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 36 VAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 4557778999985 99999999999999876655
No 398
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=25.64 E-value=4.2e+02 Score=22.58 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=60.4
Q ss_pred EEecCCCccCHHHHH-HHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCC----CCCCCCCCCCCCCCch
Q 037721 14 VMFPWFAFGHISPFV-QLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPH----VDGLPPGLDSTSEMTP 88 (465)
Q Consensus 14 l~~~~~~~GH~~p~l-~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~ 88 (465)
..+.+...+.+..++ .+|..|.++|++|.=++.......-.. ........++.-. ...+..+..
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~----~~~m~l~dl~~G~~~~IsQ~LG~gs~------- 70 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG----RCDMDLRDLPSGRRIRISQDLGPGSR------- 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC----ccceEEEECCCCCEEEEeeccCCCCc-------
Confidence 345555567776655 579999999999887775542211111 1224555554100 011111101
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCcc---------cccccccccCCeeEEEecchH
Q 037721 89 HMAELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYW---------LPGLVGSQLGIKTVNFSVFSA 146 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~---------~~~~~A~~~giP~v~~~~~~~ 146 (465)
--+.....+......+.+.+++ ++|++|..=|.-- .... |-..|||+++..+...
T Consensus 71 -gCrLD~~~La~A~~~l~~al~~-~~DLlivNkFGk~Ea~G~Glr~~i~~-A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 71 -GCRLDPGALAEASAALRRALAE-GADLLIVNKFGKQEAEGRGLRDEIAA-ALAAGIPVLTAVPPRN 134 (159)
T ss_pred -ccccCHHHHHHHHHHHHHHHhc-CCCEEEEcccHHhhhcCCCHHHHHHH-HHHCCCCEEEEECHHH
Confidence 1111222333333445555554 4899998753211 1233 5577999988766443
No 399
>PLN02263 serine decarboxylase
Probab=25.61 E-value=1.1e+02 Score=31.18 Aligned_cols=81 Identities=7% Similarity=0.067 Sum_probs=52.4
Q ss_pred EecccchHhhhccccceeecccCChhhHHHHHHhCC-----ceeeccccccc-hhhHHHHhhhhcceEEeeecCCCCccC
Q 037721 337 HTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDC-----QLVLLPLKGDQ-FLNSKLVAGDLKAGVEVNRRDHDGHFG 410 (465)
Q Consensus 337 ~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~Gv-----P~l~~P~~~DQ-~~na~~v~~~~G~G~~l~~~~~~~~~~ 410 (465)
+.+|+-+..=++..+..++||.||.-+.+-|++.+- +++.+| || +.--.+..+.+|+.++.-..++.+.++
T Consensus 138 Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S---~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD 214 (470)
T PLN02263 138 VLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYAS---RESHYSVFKAARMYRMECVKVDTLVSGEID 214 (470)
T ss_pred HHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEc---CCccHHHHHHHHhcCCcceEeccCCCCcCc
Confidence 346665444333334456899999988888877642 344433 44 334445555668887765555567899
Q ss_pred HHHHHHHHHH
Q 037721 411 KEDIFKAVKT 420 (465)
Q Consensus 411 ~~~l~~ai~~ 420 (465)
.+.|+++|.+
T Consensus 215 ~~aL~~aI~~ 224 (470)
T PLN02263 215 CADFKAKLLA 224 (470)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 400
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=25.58 E-value=69 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 037721 22 GHISPFVQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 22 GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
-++.-.+.+.+.+.++|-+|.|+++.....
T Consensus 40 ~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~ 69 (193)
T cd01425 40 EKLRLALNFIANIAAKGGKILFVGTKPQAQ 69 (193)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 344555666677778899999999885443
No 401
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=25.56 E-value=59 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCEEEEEeCCCChhhhhccc
Q 037721 28 VQLSNKLSLHGVKVSFFSAPGNIPRIKSSL 57 (465)
Q Consensus 28 l~La~~L~~rGh~V~~~~~~~~~~~i~~~g 57 (465)
.-+|..|.+.||+|++++.....+.+.+.|
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g 40 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQG 40 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhee
Confidence 347889999999999999888445566666
No 402
>PRK13057 putative lipid kinase; Reviewed
Probab=25.49 E-value=93 Score=29.35 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=24.0
Q ss_pred ccccceeecccCChhhHHHHH----HhCCceeeccc
Q 037721 348 RHESVGCYVCHSGFSSVTEAV----ISDCQLVLLPL 379 (465)
Q Consensus 348 ~~~~~~~~ItHgG~~s~~Eal----~~GvP~l~~P~ 379 (465)
...++ +|.-||-||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34455 99999999999986 34789999995
No 403
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=25.43 E-value=57 Score=30.66 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCEEEEEeCCCChhhhhccc
Q 037721 29 QLSNKLSLHGVKVSFFSAPGNIPRIKSSL 57 (465)
Q Consensus 29 ~La~~L~~rGh~V~~~~~~~~~~~i~~~g 57 (465)
-+|..|.+.||+|++++.....+.+.+.|
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~G 33 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQEG 33 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHCC
Confidence 47888999999999999864445566656
No 404
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=25.42 E-value=1.4e+02 Score=27.71 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCC-CEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhHHHH
Q 037721 27 FVQLSNKLSLHG-VKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMAELLKQALDLMQPQI 105 (465)
Q Consensus 27 ~l~La~~L~~rG-h~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (465)
+-..++.|.+.+ .+|.+.+.....+...........+-+.-+|.+.. ..+. +... .+...-....+.-
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~---~~g~------~~~~--iia~~GPfs~e~n 186 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPES---ALGF------PPKN--IIAMQGPFSKELN 186 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccc---cCCC------Chhh--EEEEeCCCCHHHH
Confidence 345666676667 56666655555544422111123355555664322 1111 1000 0000000122344
Q ss_pred HHHHhhcCCcEEEEcCCCccc----ccccccccCCeeEEE
Q 037721 106 KTLLSQLKPHFVFFDFTHYWL----PGLVGSQLGIKTVNF 141 (465)
Q Consensus 106 ~~~l~~~~pD~vi~D~~~~~~----~~~~A~~~giP~v~~ 141 (465)
.+++++++.|+||+=..--.+ ..+ |+++|||++++
T Consensus 187 ~al~~~~~i~~lVtK~SG~~g~~eKi~A-A~~lgi~vivI 225 (249)
T PF02571_consen 187 RALFRQYGIDVLVTKESGGSGFDEKIEA-ARELGIPVIVI 225 (249)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHHHHHH-HHHcCCeEEEE
Confidence 677888999999974421112 367 99999999986
No 405
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=25.35 E-value=99 Score=31.06 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 5 SAEADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
.+.+++.||+++-.+ .++ +..|+.|...+++||++.....
T Consensus 5 ~~~~~~~~vVIvGgG-~aG----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 5 TARLKKPNVVVLGTG-WAG----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred ccCCCCCeEEEECCC-HHH----HHHHHHhCcCCCeEEEEcCCCC
Confidence 455677888888766 343 3457888767899999976543
No 406
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.31 E-value=60 Score=28.12 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHHHhhcCCcEEEEcCCCcc--cccccccccCCeeEEEe
Q 037721 106 KTLLSQLKPHFVFFDFTHYW--LPGLVGSQLGIKTVNFS 142 (465)
Q Consensus 106 ~~~l~~~~pD~vi~D~~~~~--~~~~~A~~~giP~v~~~ 142 (465)
.+.+...+||+||....... .... -+..|||++.+.
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~-l~~~gIpvv~i~ 99 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDK-LEQLGIPVLYVN 99 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHH-HHHcCCCEEEeC
Confidence 45555679999998653322 2233 457899998764
No 407
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.10 E-value=1e+02 Score=22.36 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCC
Q 037721 26 PFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 26 p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
--+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999987654
No 408
>PRK14098 glycogen synthase; Provisional
Probab=25.07 E-value=1.2e+02 Score=31.14 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=27.9
Q ss_pred cEEEEecCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 11 LHVVMFPWF------AFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 11 ~~il~~~~~------~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+||++++.. +.|=-.-.-+|.++|+++||+|.++.+..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 788887642 22223345678899999999999999864
No 409
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.05 E-value=89 Score=22.10 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 037721 27 FVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 27 ~l~La~~L~~rGh~V~~~~~~ 47 (465)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367789999999999998543
No 410
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=24.98 E-value=2.8e+02 Score=27.39 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=26.3
Q ss_pred CcEEEEec-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 10 QLHVVMFP-WFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 10 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
..+|.++- .|..|. .+|..|+++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 46788886 676664 6899999999999998754
No 411
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=24.91 E-value=1.5e+02 Score=23.75 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=25.7
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 037721 14 VMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSA 46 (465)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 46 (465)
+++..+..++-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 455556566677789999999999999888743
No 412
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=24.65 E-value=1.6e+02 Score=25.38 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhc
Q 037721 269 PKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILR 348 (465)
Q Consensus 269 ~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~ 348 (465)
.+.+-.+.+|.++ +.+++.++..|.+++..-.... ... ++.. .+ + .+.+-.++++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------~~~---~~~~----~~--~-~~~~l~ell~ 90 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------PEE---GADE----FG--V-EYVSLDELLA 90 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------HHH---HHHH----TT--E-EESSHHHHHH
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------hhh---hccc----cc--c-eeeehhhhcc
Confidence 3568888999887 3566666677888876654431 000 0110 01 2 5667888999
Q ss_pred cccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHH
Q 037721 349 HESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKT 420 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ 420 (465)
.+++ ++.|+-.+. .-....|+..+..+ +-|..+-.-...+.++.++|.+++++
T Consensus 91 ~aDi--v~~~~plt~----------------~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 91 QADI--VSLHLPLTP----------------ETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp H-SE--EEE-SSSST----------------TTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhh--hhhhhcccc----------------ccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHhh
Confidence 9998 777753321 12566788888877 76655443222456788888877754
No 413
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.64 E-value=1.4e+02 Score=28.29 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=30.1
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
.|.|..-||-|-.+-...||..|++.|++|.++-.+
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 445555579999999999999999999999998444
No 414
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=24.39 E-value=1.2e+02 Score=30.41 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=31.2
Q ss_pred CcEEEEecC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 10 QLHVVMFPW--FAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+++|+.+.. ||-|-..-.+.||..|+.+|++|.++=.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 345555444 799999999999999999999999884443
No 415
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.32 E-value=1.7e+02 Score=24.98 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=41.5
Q ss_pred hhhcceEEeeecCCCCccCHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 037721 392 GDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMVDVNKEPGASIRANQKWWREFLLNGQIQDKFIADFV 458 (465)
Q Consensus 392 ~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 458 (465)
++ .+.+.....+ .++++.|.+.|-.+-. --++|+....|.-.+-...+.++.+++++
T Consensus 92 ~l-~V~L~f~smd---DFsP~~Va~qVp~L~k------LLeaR~~L~~L~~~ldg~~~~e~~l~~lL 148 (169)
T COG3516 92 EL-AVDLTFESMD---DFSPDAVARQVPELKK------LLEARTALADLKGPLDGNPAFEELLQDLL 148 (169)
T ss_pred ee-eeeeeecccc---cCCHHHHHHhhHHHHH------HHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 44 8888887654 5999999998877766 66688888888877765555555555555
No 416
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.29 E-value=4.5e+02 Score=22.37 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChh
Q 037721 283 LTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFS 362 (465)
Q Consensus 283 ~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~ 362 (465)
..++.+.++++..+..+..+++...+. .++||.-.- ++.+.. |+.-|-- .-.-+|+.
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~---------aa~Lpgvva-----------~~t~~P-VIgvP~~--~~~l~G~d 93 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG---------AAHLPGMVA-----------ALTPLP-VIGVPVP--SKALSGLD 93 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc---------cchhHHHHH-----------hccCCC-EEEecCC--ccCCCCHH
Confidence 567888888888888888888887764 677875222 111110 0111100 01247889
Q ss_pred hHHHHHH--hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 363 SVTEAVI--SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 363 s~~Eal~--~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
+++-.+. .|+|+-++ ..|.-.||....-. .+. +..++|.++++...
T Consensus 94 aLlS~vqmP~gvpvatv--~I~~~~nAa~~Aaq-----Il~-------~~d~~l~~kl~~~r 141 (156)
T TIGR01162 94 SLLSIVQMPSGVPVATV--AIGNAGNAALLAAQ-----ILG-------IKDPELAEKLKEYR 141 (156)
T ss_pred HHHHHhcCCCCCeeEEE--EcCChhHHHHHHHH-----HHc-------CCCHHHHHHHHHHH
Confidence 9999988 89996554 45577788876654 122 45567777776543
No 417
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=24.14 E-value=59 Score=27.82 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=20.3
Q ss_pred ecccCCh------hhHHHHHHhCCceeecc
Q 037721 355 YVCHSGF------SSVTEAVISDCQLVLLP 378 (465)
Q Consensus 355 ~ItHgG~------~s~~Eal~~GvP~l~~P 378 (465)
+++|+|- +.+.||...++|||++.
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 7888774 47789999999999985
No 418
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=24.08 E-value=1.4e+02 Score=27.26 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=29.2
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCE-EEEEeCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVK-VSFFSAP 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~-V~~~~~~ 47 (465)
-|+|.-.|..|-......|.++|.++|++ +..+..+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 37777889999999999999999999985 4444433
No 419
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.92 E-value=1.1e+02 Score=19.73 Aligned_cols=25 Identities=40% Similarity=0.516 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHhhcccCCcch-HHHHHHHHHH
Q 037721 410 GKEDIFKAVKTVMVDVNKEPG-ASIRANQKWW 440 (465)
Q Consensus 410 ~~~~l~~ai~~ll~~~~~~~~-~~~~~~a~~l 440 (465)
+.++|..||..+.+ + -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~------g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKN------GKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHT------TSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHh------CCCCHHHHHHHH
Confidence 46889999999987 4 6677666543
No 420
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=23.78 E-value=1.4e+02 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=29.9
Q ss_pred CcEEEEecC--CCccCHHHHHHHHHHHHhCCCEEEEEe
Q 037721 10 QLHVVMFPW--FAFGHISPFVQLSNKLSLHGVKVSFFS 45 (465)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~ 45 (465)
+.+|+.+.. ||-|-..-.+.||..|+.+|++|.++=
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 455654444 799999999999999999999999885
No 421
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.73 E-value=2e+02 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=33.3
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
-|+|+..+|-|-..-...||..|++.|++|.++..+.++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 455666679999999999999999999999999987653
No 422
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.70 E-value=71 Score=33.20 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEe
Q 037721 104 QIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFS 142 (465)
Q Consensus 104 ~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~ 142 (465)
.+.+.+++.+||+||.+.. ...+ |+++|+|++.+.
T Consensus 353 el~~~i~~~~PdliiG~~~---er~~-a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQM---ERHS-AKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcCCCEEEEcch---HHHH-HHHcCCCEEEec
Confidence 5566777779999998773 4456 889999998764
No 423
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.65 E-value=2.6e+02 Score=26.23 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=52.4
Q ss_pred cccCCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEeccc
Q 037721 262 KWLCKYPPKSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWV 341 (465)
Q Consensus 262 ~~l~~~~~~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~ 341 (465)
+++... +.++++++|+.. ..-..+...|.+.|.++......+. .+
T Consensus 125 ~~L~~A--~rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~~----------------------------~~- 169 (281)
T COG1737 125 ELLAKA--RRIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTHG----------------------------QL- 169 (281)
T ss_pred HHHHcC--CeEEEEEechhH----HHHHHHHHHHHHcCCceeEecchHH----------------------------HH-
Confidence 344443 447888877755 2233345555667777766643320 11
Q ss_pred chHhhhccccceeecccCChh-----hHHHHHHhCCceeeccccccc
Q 037721 342 QQQLILRHESVGCYVCHSGFS-----SVTEAVISDCQLVLLPLKGDQ 383 (465)
Q Consensus 342 pq~~vL~~~~~~~~ItHgG~~-----s~~Eal~~GvP~l~~P~~~DQ 383 (465)
.+...+...++-.+|+|.|.+ .+..|-..|+|+|.+=-..+-
T Consensus 170 ~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 170 MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 244555566666689999964 455567789999987654433
No 424
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.64 E-value=1e+02 Score=28.56 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=34.9
Q ss_pred ccceeecccCChhhHHHHHH-hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 350 ESVGCYVCHSGFSSVTEAVI-SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
+++ +|+=||-||++.|+. +++|++.+-.. .+|... ..+.+++.++++++++
T Consensus 42 ~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~-------~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 42 ADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS-------SYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc-------ccCHHHHHHHHHHHHc
Confidence 355 999999999999987 47777764411 122221 1567888888888876
No 425
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.58 E-value=1.5e+02 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=30.4
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 20 AFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
..|+...++.+++.++++|..|..+|........+.
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 578889999999999999999999998777665544
No 426
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.52 E-value=95 Score=29.13 Aligned_cols=52 Identities=10% Similarity=0.205 Sum_probs=36.2
Q ss_pred cccceeecccCChhhHHHHHHh-CCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 349 HESVGCYVCHSGFSSVTEAVIS-DCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 349 ~~~~~~~ItHgG~~s~~Eal~~-GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.+++ +|+=||-||++.++.. ..|++.+-. - .+|.. .+ .+.+++.++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~-------------G-~lGFL---~~----~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM-------------G-GLGFL---TE----IEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC-------------C-CCccC---cc----cCHHHHHHHHHHHHc
Confidence 4455 9999999999999884 557666432 0 22222 21 678889999999887
No 427
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=23.24 E-value=70 Score=30.54 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=30.5
Q ss_pred hhccccceeecccCChhhHHHHHH----hCCceeeccccccc
Q 037721 346 ILRHESVGCYVCHSGFSSVTEAVI----SDCQLVLLPLKGDQ 383 (465)
Q Consensus 346 vL~~~~~~~~ItHgG~~s~~Eal~----~GvP~l~~P~~~DQ 383 (465)
.|..-+++.+|.=||.+|+.-|.. +++|++.+|-..|-
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDN 127 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDN 127 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccC
Confidence 466667888999999999877753 79999999986653
No 428
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.06 E-value=1.1e+02 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=26.7
Q ss_pred cchHhhhccccceeecccCChhhHHH---HHHhCCceeeccc
Q 037721 341 VQQQLILRHESVGCYVCHSGFSSVTE---AVISDCQLVLLPL 379 (465)
Q Consensus 341 ~pq~~vL~~~~~~~~ItHgG~~s~~E---al~~GvP~l~~P~ 379 (465)
.+...++...+-..++--||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44555555444444566788887655 6889999999885
No 429
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.89 E-value=1.8e+02 Score=28.05 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=38.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhh
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPR 52 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~ 52 (465)
+.-|+|+-.-|.|-..-+-.||..|.+.|+.|.++..+.|++-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH
Confidence 4456778888999999999999999999999999999988864
No 430
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.74 E-value=87 Score=30.35 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=35.2
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhh
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRI 53 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i 53 (465)
..++|.-.+|.|-..=..++|++|.++|+.|.|++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 3577777779999999999999999999999999876654444
No 431
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=22.72 E-value=84 Score=29.54 Aligned_cols=18 Identities=6% Similarity=-0.258 Sum_probs=13.8
Q ss_pred ccccccccCCeeEEEecch
Q 037721 127 PGLVGSQLGIKTVNFSVFS 145 (465)
Q Consensus 127 ~~~~A~~~giP~v~~~~~~ 145 (465)
..+ |+.+|+|+++..++.
T Consensus 204 A~~-Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 204 ALA-CHDNGVPFYVAAETF 221 (275)
T ss_pred HHH-HHHcCCCEEEECccc
Confidence 456 899999999875543
No 432
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.71 E-value=1.8e+02 Score=29.46 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=35.9
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
+..|+|+..+|.|-..-+..||..|.++|+.|.+++.+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 445677777899999999999999999999999998887654
No 433
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.40 E-value=1.5e+02 Score=25.20 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=27.8
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 16 FPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
.+-||-|-..-...||..|+++|++|.++=.+
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 44479999999999999999999999997544
No 434
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.37 E-value=2.2e+02 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=18.2
Q ss_pred EEEEecCCCcc--CHHHHHHHHHHHHh
Q 037721 12 HVVMFPWFAFG--HISPFVQLSNKLSL 36 (465)
Q Consensus 12 ~il~~~~~~~G--H~~p~l~La~~L~~ 36 (465)
+|++.-|+-+| ..||...+++.|..
T Consensus 2 ~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 2 KVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 57776665443 47899999999965
No 435
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=22.31 E-value=3.9e+02 Score=22.80 Aligned_cols=37 Identities=5% Similarity=0.200 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 037721 428 EPGASIRANQKWWREFLLNGQIQDKFIADFVKDLKAL 464 (465)
Q Consensus 428 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 464 (465)
..|+++-++++.+...++++...+...++|-+.+++.
T Consensus 120 saDpd~~~Ri~~~~~~i~~G~pv~~~~~e~~~iv~Rv 156 (158)
T TIGR02898 120 SADPDTVERIRRYGKGIKEGRPVEGFLDELAEIVRRV 156 (158)
T ss_pred EcCHHHHHHHHHHHHHhHcCCChHHHHHHHHHHHHhc
Confidence 4489999999999999998877777777777666654
No 436
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=22.28 E-value=1.6e+02 Score=28.45 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=33.4
Q ss_pred EEEE--ecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 12 HVVM--FPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 12 ~il~--~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
=|.+ ++.++.|-+.-...|++.|.++|++|.+++.....
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 3455 67899999999999999999999999999877643
No 437
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=22.28 E-value=1.9e+02 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
+++.-.++.|-......++..|+++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567777899999999999999999999999998776543
No 438
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=22.27 E-value=5.5e+02 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=36.5
Q ss_pred EEEEecCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhccc
Q 037721 12 HVVMFPWF-AFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSL 57 (465)
Q Consensus 12 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g 57 (465)
+|+++-.. .-|-..-.+.|.+++..+|.++-|+.+.+..-++.+.|
T Consensus 150 ~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~g 196 (339)
T COG3367 150 VVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDG 196 (339)
T ss_pred EEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCc
Confidence 44444443 78999999999999999999999999998776665444
No 439
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.20 E-value=1.2e+02 Score=31.15 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=36.2
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhc
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKS 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~ 55 (465)
..||++.-.++.+ ..=...|++.|.++|++|.++.++....++..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 4678777666544 44788999999999999999999988877765
No 440
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.82 E-value=1.8e+02 Score=21.31 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.8
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSA 46 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 46 (465)
+|++++. ...+..-.+.+++.|++.|.+|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5666665 367788899999999999999988543
No 441
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.73 E-value=3.8e+02 Score=23.77 Aligned_cols=88 Identities=7% Similarity=0.130 Sum_probs=46.4
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCC-Chhh---hhcccCCCCCeeEEEccCCCCCCCCCCCCCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPG-NIPR---IKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSE 85 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~-~~~~---i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (465)
||+++.++..+.+.-++. +...- ..+|..+..+. .+.- .++.| +....+. ...++
T Consensus 2 ki~VlaSG~GSNlqaiid---a~~~~~~~a~i~~Visd~~~A~~lerA~~~g-----Ipt~~~~---~k~~~-------- 62 (200)
T COG0299 2 KIAVLASGNGSNLQAIID---AIKGGKLDAEIVAVISDKADAYALERAAKAG-----IPTVVLD---RKEFP-------- 62 (200)
T ss_pred eEEEEEeCCcccHHHHHH---HHhcCCCCcEEEEEEeCCCCCHHHHHHHHcC-----CCEEEec---cccCC--------
Confidence 688888887777665544 44321 24555554443 4433 44444 4443332 11111
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEc-CCCcccccc
Q 037721 86 MTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFD-FTHYWLPGL 129 (465)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D-~~~~~~~~~ 129 (465)
..+.+...+.+.+++.+||+|+.- ++-.-...+
T Consensus 63 -----------~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~f 96 (200)
T COG0299 63 -----------SREAFDRALVEALDEYGPDLVVLAGYMRILGPEF 96 (200)
T ss_pred -----------CHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHH
Confidence 011134577888999999997754 444333333
No 442
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=21.72 E-value=1.1e+02 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=27.8
Q ss_pred HhhHHHHHHHHhhcCCcEEEEcCCCccc---------------ccccccccCCeeEEEecchH
Q 037721 99 DLMQPQIKTLLSQLKPHFVFFDFTHYWL---------------PGLVGSQLGIKTVNFSVFSA 146 (465)
Q Consensus 99 ~~~~~~l~~~l~~~~pD~vi~D~~~~~~---------------~~~~A~~~giP~v~~~~~~~ 146 (465)
....+.+.+++++++||.++.+..++.. ..+ +...|+|+..+.|...
T Consensus 44 ~~I~~~l~~li~~~~P~~vaiE~~f~~~n~~s~~~l~~arGvi~l~-~~~~~i~v~~y~P~~v 105 (149)
T PF02075_consen 44 KEIYEELEELIEEYNPDEVAIEEIFFGKNPKSALKLGQARGVILLA-AAQRGIPVFEYTPSEV 105 (149)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHH-HHTTT--EEEEEHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEeehhhhccCHHHHHHHHHHHHHHHHH-HHHcCCeEEEECHHHH
Confidence 3466888999999999998877544431 123 5678888887766543
No 443
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=21.64 E-value=89 Score=31.51 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEec
Q 037721 104 QIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 104 ~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~ 143 (465)
.+.+++++.+||++|.+.. ...+ |+++|+|++.+..
T Consensus 361 e~~~~i~~~~pdliig~~~---~~~~-a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIARTEPELIFGTQM---ERHI-GKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHhhCCCEEEecch---hhHH-HHHcCCCEEEEeC
Confidence 4566677778999999873 4456 8899999987643
No 444
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.54 E-value=75 Score=32.94 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCcEEEEcCCCcccccccccccCCeeEEEec
Q 037721 104 QIKTLLSQLKPHFVFFDFTHYWLPGLVGSQLGIKTVNFSV 143 (465)
Q Consensus 104 ~l~~~l~~~~pD~vi~D~~~~~~~~~~A~~~giP~v~~~~ 143 (465)
.+.+.+++.+||+||.+. ....+ |+++|+|++.+..
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~-a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHS-AKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHH-HHHcCCCEEEecC
Confidence 556667777899999987 34556 8999999987644
No 445
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.49 E-value=1.4e+02 Score=29.59 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred CcEEEEecC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 10 QLHVVMFPW--FAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
+++|+.+.. ||-|-..-.+.||..|+.+|++|.++=.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 445554443 699999999999999999999999885444
No 446
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=21.46 E-value=2e+02 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.118 Sum_probs=29.8
Q ss_pred cEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 11 LHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
.+++++..+. =+.|++.+++.|.++|++|+++......
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 4788887553 4899999999999999999988655443
No 447
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=21.40 E-value=1.7e+02 Score=29.79 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.2
Q ss_pred EEEEecCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 12 HVVMFPWF---AFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 12 ~il~~~~~---~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
+++|++.+ +.|-=.-.-+|+..|.+||++||..=-++.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 57888887 666667889999999999999999865544
No 448
>PRK13059 putative lipid kinase; Reviewed
Probab=21.38 E-value=3.1e+02 Score=25.89 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.4
Q ss_pred eecccCChhhHHHHH---H---hCCceeeccc
Q 037721 354 CYVCHSGFSSVTEAV---I---SDCQLVLLPL 379 (465)
Q Consensus 354 ~~ItHgG~~s~~Eal---~---~GvP~l~~P~ 379 (465)
.+|.-||-||+.|++ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 399999999999885 2 3589999996
No 449
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.36 E-value=59 Score=30.65 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=34.1
Q ss_pred ccceeecccCChhhHHHHHH---hCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 350 ESVGCYVCHSGFSSVTEAVI---SDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 350 ~~~~~~ItHgG~~s~~Eal~---~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
.++ +|+-||-||+++++. .++|++.++..- +|. +. .+.++++.+++.++++
T Consensus 58 ~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lGF-l~------~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 58 VDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LGF-LT------EVEPEETFFALSRLLE 111 (277)
T ss_pred CCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CCc-cc------cCCHHHHHHHHHHHHc
Confidence 455 999999999999984 456888877411 011 11 1456777777777776
No 450
>PRK13055 putative lipid kinase; Reviewed
Probab=21.35 E-value=2.6e+02 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.3
Q ss_pred ecccCChhhHHHHHHh------CCceeeccc
Q 037721 355 YVCHSGFSSVTEAVIS------DCQLVLLPL 379 (465)
Q Consensus 355 ~ItHgG~~s~~Eal~~------GvP~l~~P~ 379 (465)
+|--||-||+.|++.. .+|+-++|.
T Consensus 63 vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 8999999999999853 478888996
No 451
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=21.29 E-value=4.7e+02 Score=25.25 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=43.2
Q ss_pred cccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHH
Q 037721 339 GWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAV 418 (465)
Q Consensus 339 ~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai 418 (465)
.|++..++|+.+|+ ++-||..+-= -..-.|+..++.+ +-|..+-....++.++.+.|.+++
T Consensus 190 ~y~~l~ell~~sDi--i~l~~Plt~~----------------T~hLin~~~l~~m-k~ga~lVNtaRG~~VDe~ALi~AL 250 (324)
T COG1052 190 RYVDLDELLAESDI--ISLHCPLTPE----------------TRHLINAEELAKM-KPGAILVNTARGGLVDEQALIDAL 250 (324)
T ss_pred eeccHHHHHHhCCE--EEEeCCCChH----------------HhhhcCHHHHHhC-CCCeEEEECCCccccCHHHHHHHH
Confidence 77789999999999 7777644311 1244577777776 777766554445567777777777
Q ss_pred HH
Q 037721 419 KT 420 (465)
Q Consensus 419 ~~ 420 (465)
++
T Consensus 251 ~~ 252 (324)
T COG1052 251 KS 252 (324)
T ss_pred Hh
Confidence 64
No 452
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=21.23 E-value=2.1e+02 Score=27.59 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=31.2
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 037721 14 VMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
.+.-.++.|-.+-++.++....++|..|.|+..+...+
T Consensus 59 eI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 59 EIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 44555699999999999999999999999998776444
No 453
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=21.22 E-value=2.3e+02 Score=27.51 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.1
Q ss_pred CcE-EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 037721 10 QLH-VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGN 49 (465)
Q Consensus 10 ~~~-il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 49 (465)
+.+ |++..-|+.|-..=...||..|+++|++|.++-.+..
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 344 4556668999999999999999999999999965433
No 454
>PRK06270 homoserine dehydrogenase; Provisional
Probab=21.16 E-value=4.4e+02 Score=25.63 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=38.1
Q ss_pred chHhhhccccceeecc------cCC---hhhHHHHHHhCCceee---ccccccchhhHHHHhhhhcceEEee
Q 037721 342 QQQLILRHESVGCYVC------HSG---FSSVTEAVISDCQLVL---LPLKGDQFLNSKLVAGDLKAGVEVN 401 (465)
Q Consensus 342 pq~~vL~~~~~~~~It------HgG---~~s~~Eal~~GvP~l~---~P~~~DQ~~na~~v~~~~G~G~~l~ 401 (465)
+..++|..+++..+|- |+| ..-+.+|+.+|+++|+ -|+...-..-.+..++. |+.+..+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 4566776554444654 443 4566899999999999 47744333445556666 8877654
No 455
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=21.04 E-value=1.6e+02 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
.|+|+.=||-|-..-...||..|+++|++|.++=.+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 466776689999999999999999999999998444
No 456
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=21.03 E-value=1.3e+02 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=20.1
Q ss_pred eEEEEEeCCcccCCHH-HHHHHHHHHHh--cCCCeEEEEcC
Q 037721 271 SVIYCSFGSETFLTVD-QIKELAIGLEI--TGLPFFLVLNF 308 (465)
Q Consensus 271 ~~v~vs~GS~~~~~~~-~~~~i~~al~~--~~~~~i~~~~~ 308 (465)
.+++|||||......+ -+..+-+.++. .++.+.|....
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4677888876654333 56666666653 46677777655
No 457
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.98 E-value=1.4e+02 Score=28.44 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=27.9
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
.+++|.|+-.+..| ..+|+.|.+.||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 35689888777655 578999999999999887654
No 458
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=20.96 E-value=1.5e+02 Score=24.12 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCCCCCCCCCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 1 MGTESAEADQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
|.+......+++|.|+-.+--| ..|++.|.+.||+|.-+....
T Consensus 1 ~~~~~~~~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 1 MNTPATQAARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----------EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCH
T ss_pred CCccccCCCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4443334568999999888555 368999999999998776554
No 459
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.95 E-value=1.6e+02 Score=26.40 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=24.1
Q ss_pred HHHHHHHhhc--CCcEEEEcCCCcc-------cccccccccCCeeEEE
Q 037721 103 PQIKTLLSQL--KPHFVFFDFTHYW-------LPGLVGSQLGIKTVNF 141 (465)
Q Consensus 103 ~~l~~~l~~~--~pD~vi~D~~~~~-------~~~~~A~~~giP~v~~ 141 (465)
+.+.+.+++. .||+|++|-.... |..+ .-.+++|+|-+
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~Hl-Gv~l~~PtIGV 127 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHL-GVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhhee-eeecCCCEEEE
Confidence 4455566655 5999999975443 2233 44667787765
No 460
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.90 E-value=2e+02 Score=30.23 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=20.8
Q ss_pred eecccCCh------hhHHHHHHhCCceeecc
Q 037721 354 CYVCHSGF------SSVTEAVISDCQLVLLP 378 (465)
Q Consensus 354 ~~ItHgG~------~s~~Eal~~GvP~l~~P 378 (465)
++++|.|- +.+.||...++|||++-
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 37888774 47999999999999985
No 461
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.89 E-value=5.8e+02 Score=22.40 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhccccceeecccCChhhHHHHHH
Q 037721 290 ELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVI 369 (465)
Q Consensus 290 ~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~ 369 (465)
.+.+.++..+..++++.+. ...+|+.+....+..-+-+ |+++ .=-..|.+.+..|+.
T Consensus 70 ~~~~~l~~~~~D~iv~~~~----------~~il~~~~l~~~~~~~iNi-----------Hpsl--LP~yrG~~p~~~ai~ 126 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAGF----------MRILGPTFLSRFAGRILNI-----------HPSL--LPAFPGLHAVEQALE 126 (190)
T ss_pred HHHHHHHhcCCCEEEEeCc----------chhCCHHHHhhccCCEEEE-----------eCCc--ccCCCCccHHHHHHH
Confidence 4666677777888877765 3456665554332221112 3333 333568899999999
Q ss_pred hCCceeecccc--ccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhh
Q 037721 370 SDCQLVLLPLK--GDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVM 422 (465)
Q Consensus 370 ~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll 422 (465)
+|....++=++ .+..+.+..+.+. -+.+.. .-|.++|.+.+..+-
T Consensus 127 ~g~~~tGvTih~v~~~~D~G~Ii~q~---~~~i~~-----~dt~~~L~~k~~~~~ 173 (190)
T TIGR00639 127 AGVKESGCTVHYVDEEVDTGPIIAQA---KVPILP-----EDTEETLEQRIHKQE 173 (190)
T ss_pred cCCCeEEEEEEEEcCCCcCCCEEEEE---EEEcCC-----CCCHHHHHHHHHHHH
Confidence 99998776653 3444555544443 112222 258888887776544
No 462
>PRK06487 glycerate dehydrogenase; Provisional
Probab=20.81 E-value=4.5e+02 Score=25.20 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=38.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCcccccccCChhhhhhcCCCceEEecccchHhhhcc
Q 037721 270 KSVIYCSFGSETFLTVDQIKELAIGLEITGLPFFLVLNFPPNVDGQSELVRTLPPGFMDRVKDRGVVHTGWVQQQLILRH 349 (465)
Q Consensus 270 ~~~v~vs~GS~~~~~~~~~~~i~~al~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~pq~~vL~~ 349 (465)
+.+-.|.+|+++ +.+++.++..|.+++..-... -+. ...++.-.++|+.
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~------------~~~------------~~~~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG------------RPA------------RPDRLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC------------Ccc------------cccccCHHHHHHh
Confidence 668899999987 245555556678776442211 000 0135567889999
Q ss_pred ccceeecccCChh
Q 037721 350 ESVGCYVCHSGFS 362 (465)
Q Consensus 350 ~~~~~~ItHgG~~ 362 (465)
+++ ++.|+-.+
T Consensus 198 sDi--v~l~lPlt 208 (317)
T PRK06487 198 VDA--LTLHCPLT 208 (317)
T ss_pred CCE--EEECCCCC
Confidence 998 88776544
No 463
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.80 E-value=1.6e+02 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=28.5
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 037721 13 VVMF-PWFAFGHISPFVQLSNKLSLHGVKVSFFSA 46 (465)
Q Consensus 13 il~~-~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 46 (465)
|+++ +-||-|-++=.-+||..|+++|++|..+=-
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5443 347999999999999999999999998843
No 464
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.79 E-value=1.8e+02 Score=25.72 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=31.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 037721 13 VVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNI 50 (465)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 50 (465)
|+|+-..|-|-..-...||..+..+|..|.+++.+.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 45566669999999999999999999999999988765
No 465
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=20.77 E-value=6.7e+02 Score=26.40 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=36.0
Q ss_pred ecccCChhhHH-HHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCccCHHHHHHHHHHhhc
Q 037721 355 YVCHSGFSSVT-EAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHFGKEDIFKAVKTVMV 423 (465)
Q Consensus 355 ~ItHgG~~s~~-Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 423 (465)
++..+|++.+. +....|.+-.. ......+.++.++.. |+- -..- -+.++|.+++++.++
T Consensus 459 V~NN~~~g~i~~~q~~~~~~~~~--~~~~~~df~~lA~a~-G~~--~~~v-----~~~~el~~al~~a~~ 518 (578)
T PRK06546 459 VFNNSTLGMVKLEMLVDGLPDFG--TDHPPVDYAAIAAAL-GIH--AVRV-----EDPKDVRGALREAFA 518 (578)
T ss_pred EEECCccccHHHHHHhcCCCccc--ccCCCCCHHHHHHHC-CCe--eEEe-----CCHHHHHHHHHHHHh
Confidence 78999998763 23233333211 122356777877776 763 1221 378999999999864
No 466
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=20.75 E-value=1.7e+02 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=25.0
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
..+|+++-.+.- ....++.|.+.|++|+++.+.
T Consensus 13 ~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 356777766633 377899999999999999644
No 467
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.74 E-value=4.8e+02 Score=24.10 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=52.5
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCCCCCchHHH
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDSTSEMTPHMA 91 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (465)
+|+++..-+- -..||+.|.++|+.|++.+...... ....+ .... . ..+.
T Consensus 4 ~IlvlgGT~e-----gr~la~~L~~~g~~v~~Svat~~g~-~~~~~-----~~v~-~-----G~l~-------------- 52 (248)
T PRK08057 4 RILLLGGTSE-----ARALARALAAAGVDIVLSLAGRTGG-PADLP-----GPVR-V-----GGFG-------------- 52 (248)
T ss_pred eEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCCC-cccCC-----ceEE-E-----CCCC--------------
Confidence 5666544433 3578999999999888866554333 11111 1110 0 0110
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEcCCCccc-------ccccccccCCeeEEEe
Q 037721 92 ELLKQALDLMQPQIKTLLSQLKPHFVFFDFTHYWL-------PGLVGSQLGIKTVNFS 142 (465)
Q Consensus 92 ~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~~~~~~-------~~~~A~~~giP~v~~~ 142 (465)
-...+.+++++.+.++|| |...++| ..+ |+++|||++-+.
T Consensus 53 ---------~~~~l~~~l~~~~i~~VI-DATHPfA~~is~~a~~a-c~~~~ipyiR~e 99 (248)
T PRK08057 53 ---------GAEGLAAYLREEGIDLVI-DATHPYAAQISANAAAA-CRALGIPYLRLE 99 (248)
T ss_pred ---------CHHHHHHHHHHCCCCEEE-ECCCccHHHHHHHHHHH-HHHhCCcEEEEe
Confidence 114567777888888866 4434553 467 899999999873
No 468
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.50 E-value=1.8e+02 Score=23.60 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=26.1
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHh--cCCCeEEEEc
Q 037721 271 SVIYCSFGSETFLTVDQIKELAIGLEI--TGLPFFLVLN 307 (465)
Q Consensus 271 ~~v~vs~GS~~~~~~~~~~~i~~al~~--~~~~~i~~~~ 307 (465)
.+++++|||......+.+..+.+.++. .+..+-|...
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 489999999876455778888888853 3455666643
No 469
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=20.37 E-value=1.6e+02 Score=28.01 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=48.6
Q ss_pred cCCCceEEecccchHhhhccccceeecccCChhhHHHHHHhCCceeeccccccchhhHHHHhhhhcceEEeeecCCCCcc
Q 037721 330 VKDRGVVHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVISDCQLVLLPLKGDQFLNSKLVAGDLKAGVEVNRRDHDGHF 409 (465)
Q Consensus 330 ~~~~nv~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 409 (465)
.+..++++.+|.....+..+ |+-......|+.+|+=|+.++...+.. ...+.+. +... .+
T Consensus 225 lgf~G~viSD~~~m~~~~~~--------~~~~~~~~~al~AG~D~~l~~~~~~~~--~~~l~~a------v~~g----~i 284 (299)
T PF00933_consen 225 LGFDGVVISDDLEMGALSSN--------YSIEEAAVRALNAGCDMLLVCNDPDDD--IDALVEA------VESG----RI 284 (299)
T ss_dssp S---SEEEESTTTSHHHHCC--------TTHHHHHHHHHHHT-SBEESSSSHHHH--HHHHHHH------HHTT----SS
T ss_pred ccCCCeEecccchHHHHHhc--------cccchHHHHHHhCccCeeCCCCchhHH--HHHHHHH------HHcC----CC
Confidence 34568899888765553332 223467889999999999999766433 3333333 3333 58
Q ss_pred CHHHHHHHHHHhhc
Q 037721 410 GKEDIFKAVKTVMV 423 (465)
Q Consensus 410 ~~~~l~~ai~~ll~ 423 (465)
+.+.|.++++|+|+
T Consensus 285 ~~~~ld~av~RIl~ 298 (299)
T PF00933_consen 285 SEERLDEAVRRILR 298 (299)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999985
No 470
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=20.34 E-value=2.7e+02 Score=26.95 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=32.3
Q ss_pred EEE-EecCCCccCHHHHHHHHHHHHhCCCEEEEEeCCCChh
Q 037721 12 HVV-MFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIP 51 (465)
Q Consensus 12 ~il-~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 51 (465)
+|. +.-.++.|-.+-++.++....++|..+.|+.++...+
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 444 4555699999999999999999999999998876544
No 471
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.27 E-value=6.1e+02 Score=24.05 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=45.3
Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCC--ChhhhhcccCCCCCeeEEEccCCCCCCCCCCCCCC
Q 037721 8 ADQLHVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPG--NIPRIKSSLNLTPMADIIPLQIPHVDGLPPGLDST 83 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~--~~~~i~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (465)
.+++||+++..+..+-+ -+|..+..+. ..+|.++.+.. ..+.+++.| +.+..++ .. +.. .
T Consensus 91 ~~~~kiavl~Sg~g~nl---~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~g-----Ip~~~~~----~~-~~~---~ 154 (289)
T PRK13010 91 GQRPKVVIMVSKFDHCL---NDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHD-----IPFHHLP----VT-PDT---K 154 (289)
T ss_pred CCCeEEEEEEeCCCccH---HHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcC-----CCEEEeC----CC-ccc---c
Confidence 45678988877753333 3444444433 34665554433 344555556 7777665 11 000 0
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhhcCCcEEEEcC
Q 037721 84 SEMTPHMAELLKQALDLMQPQIKTLLSQLKPHFVFFDF 121 (465)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~vi~D~ 121 (465)
......+.+++++.++|++|.-.
T Consensus 155 ---------------~~~~~~~~~~l~~~~~Dlivlag 177 (289)
T PRK13010 155 ---------------AQQEAQILDLIETSGAELVVLAR 177 (289)
T ss_pred ---------------cchHHHHHHHHHHhCCCEEEEeh
Confidence 00223567788889999977543
No 472
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=20.14 E-value=3.4e+02 Score=22.12 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=26.4
Q ss_pred EEecccchHhhhccccceeecccCChhhHHHHHHh----------CCceeeccc
Q 037721 336 VHTGWVQQQLILRHESVGCYVCHSGFSSVTEAVIS----------DCQLVLLPL 379 (465)
Q Consensus 336 ~~~~~~pq~~vL~~~~~~~~ItHgG~~s~~Eal~~----------GvP~l~~P~ 379 (465)
.+.+..-...+|-..+-..++.-||.||+-|.... .+|++.+=.
T Consensus 39 ~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 39 IVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp EESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred EeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 33333344555555554557888999999887432 449888763
No 473
>PRK04148 hypothetical protein; Provisional
Probab=20.12 E-value=2.2e+02 Score=23.50 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=23.7
Q ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 037721 10 QLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSAP 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 47 (465)
..+|+.+-.| .| ..+|..|.+.||+|+.+=..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 4678888777 44 34688888999999987433
No 474
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=20.10 E-value=4.7e+02 Score=24.86 Aligned_cols=32 Identities=13% Similarity=-0.100 Sum_probs=23.0
Q ss_pred EEEEecCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCCC
Q 037721 12 HVVMFPWFAFGHISPFVQLSNKLSLH--GVKVSFFSAPGN 49 (465)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~ 49 (465)
+|++...++ ++ ++++.|++. |++|..+.....
T Consensus 3 ~vLv~g~~~-~~-----~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 3 NILVTSAGR-RV-----QLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred eEEEecCCc-cH-----HHHHHHHHhccCCEEEEECCCCc
Confidence 688877753 32 788999888 598888765543
No 475
>PHA02857 monoglyceride lipase; Provisional
Probab=20.07 E-value=1.9e+02 Score=26.66 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 037721 9 DQLHVVMFPWFAFGHISPFVQLSNKLSLHGVKVSFFSA 46 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 46 (465)
.+.-++|+..|..+|..-.-.+++.|.++|+.|..+=.
T Consensus 23 ~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~ 60 (276)
T PHA02857 23 YPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDH 60 (276)
T ss_pred CCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccC
Confidence 34467888788788999999999999999998887543
No 476
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.07 E-value=2.1e+02 Score=22.76 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCCChhhhh
Q 037721 19 FAFGHISPFVQLSNKLSLHGVKVSFFSAPGNIPRIK 54 (465)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~i~ 54 (465)
...|...-++..++.++++|..|..+|........+
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 446788899999999999999999999887665544
No 477
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.06 E-value=2.1e+02 Score=24.45 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=28.2
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCCC-ChhhhhcccCCCCCeeEEEcc
Q 037721 21 FGHISPFVQLSNKLSLHGVKVSFFSAPG-NIPRIKSSLNLTPMADIIPLQ 69 (465)
Q Consensus 21 ~GH~~p~l~La~~L~~rGh~V~~~~~~~-~~~~i~~~g~~~~~~~~~~l~ 69 (465)
-|++.| |++.|+++|.+|+.++.+. ..+.+.... =+|+.+.
T Consensus 115 D~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~ac-----d~FI~L~ 156 (160)
T TIGR00288 115 DADFLP---VINKAKENGKETIVIGAEPGFSTALQNSA-----DIAIILG 156 (160)
T ss_pred cHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHHhc-----CeEEeCC
Confidence 566655 6778889999999999654 444455544 4677764
No 478
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=20.05 E-value=1.4e+02 Score=27.84 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=26.6
Q ss_pred EEEEecCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCC
Q 037721 12 HVVMFPWF---AFGHISPFVQLSNKLSLHGVKVSFFSAPG 48 (465)
Q Consensus 12 ~il~~~~~---~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 48 (465)
|++|++.+ +.|-=.-.-.|++.|.+||+.|+..=-++
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DP 41 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDP 41 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecc
Confidence 67888877 55665778899999999999999985443
Done!