BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037723
         (714 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5HK76|HSDR_STAEQ Type-1 restriction enzyme R protein OS=Staphylococcus epidermidis
           (strain ATCC 35984 / RP62A) GN=hsdR PE=3 SV=1
          Length = 930

 Score = 33.9 bits (76), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 107 AEEPPSPFFNLQCDID-ELSNDGSLFLSDSTDNDGSVLENSWEGYED---DLFQNVF--- 159
            E+   P+ N+ C  D +   D ++ +   TDN  +VL  S+E Y D   D+ Q+VF   
Sbjct: 631 VEKERKPYGNIVCYRDLKKQTDEAIEIFSQTDNTDTVLSLSYEEYLDNFKDILQDVFQLA 690

Query: 160 ------DKKDERSCIAGFVFEKGGTSGIIIKLGHKFKDEFQF 195
                 DK +       FV      S  +IKL  K  DEFQF
Sbjct: 691 PTPLDVDKLEAEDLKKEFVISFRDLSNTLIKL--KTFDEFQF 730


>sp|Q6XK22|R9BP_CHICK Regulator of G-protein signaling 9-binding protein OS=Gallus gallus
           GN=RGS9BP PE=2 SV=1
          Length = 237

 Score = 33.5 bits (75), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 329 QYKNEMLTVNSNNIV-IIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRR 378
           Q   E+   N N +  +++ KT    D A F+R++V+F+ C    +I  RR
Sbjct: 45  QKAQELAVANRNKLTTVLRDKTVSKEDKAEFERLWVIFSTCLEILEIDMRR 95


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,385,473
Number of Sequences: 539616
Number of extensions: 11582875
Number of successful extensions: 24768
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 24765
Number of HSP's gapped (non-prelim): 9
length of query: 714
length of database: 191,569,459
effective HSP length: 125
effective length of query: 589
effective length of database: 124,117,459
effective search space: 73105183351
effective search space used: 73105183351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)