Query 037723
Match_columns 714
No_of_seqs 283 out of 1200
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03097 FHY3 Protein FAR-RED 100.0 2.9E-64 6.3E-69 584.4 44.4 449 180-669 71-624 (846)
2 PF03108 DBD_Tnp_Mut: MuDR fam 99.7 2E-16 4.4E-21 130.2 9.2 67 180-246 1-67 (67)
3 PF10551 MULE: MULE transposas 99.6 1.4E-14 3.1E-19 127.1 9.0 73 384-463 1-76 (93)
4 PF00872 Transposase_mut: Tran 99.5 1.3E-14 2.7E-19 159.7 4.8 164 377-546 162-350 (381)
5 COG3328 Transposase and inacti 98.9 6.2E-09 1.3E-13 113.1 9.8 163 376-545 144-328 (379)
6 smart00575 ZnF_PMZ plant mutat 98.8 1E-09 2.2E-14 73.8 1.3 27 626-652 1-27 (28)
7 PF08731 AFT: Transcription fa 98.5 4.5E-07 9.7E-12 80.1 9.2 69 189-257 1-111 (111)
8 PF03101 FAR1: FAR1 DNA-bindin 98.4 8.7E-07 1.9E-11 77.3 6.9 61 197-258 1-90 (91)
9 PF04434 SWIM: SWIM zinc finge 98.1 2.1E-06 4.6E-11 63.0 2.3 30 621-650 10-39 (40)
10 cd06410 PB1_UP2 Uncharacterize 97.5 5.9E-05 1.3E-09 66.4 2.2 61 29-92 20-81 (97)
11 PF03106 WRKY: WRKY DNA -bindi 91.8 0.35 7.5E-06 38.8 4.9 40 217-256 20-59 (60)
12 PF13610 DDE_Tnp_IS240: DDE do 91.4 0.067 1.4E-06 50.6 0.5 78 377-463 1-78 (140)
13 PF04684 BAF1_ABF1: BAF1 / ABF 91.2 0.35 7.5E-06 53.3 5.7 57 183-239 22-79 (496)
14 smart00666 PB1 PB1 domain. Pho 88.2 0.28 6E-06 41.5 1.7 35 37-71 14-48 (81)
15 PF04500 FLYWCH: FLYWCH zinc f 81.7 2.6 5.6E-05 33.1 4.5 46 206-255 14-62 (62)
16 smart00774 WRKY DNA binding do 81.5 2.1 4.5E-05 34.2 3.7 38 218-255 21-59 (59)
17 cd06406 PB1_P67 A PB1 domain i 81.1 0.54 1.2E-05 39.8 0.2 41 35-75 12-52 (80)
18 PF00665 rve: Integrase core d 81.0 16 0.00034 32.6 10.0 76 376-457 5-81 (120)
19 cd06408 PB1_NoxR The PB1 domai 80.8 0.66 1.4E-05 39.9 0.7 50 34-84 12-61 (86)
20 cd05992 PB1 The PB1 domain is 76.3 2.1 4.7E-05 35.9 2.6 31 42-72 19-49 (81)
21 PHA02517 putative transposase 75.1 56 0.0012 34.2 13.5 73 376-455 109-181 (277)
22 PRK14702 insertion element IS2 72.0 1.3E+02 0.0029 31.4 15.7 74 377-454 87-163 (262)
23 PRK09409 IS2 transposase TnpB; 70.1 1.4E+02 0.0031 31.9 15.3 76 376-454 125-202 (301)
24 PF12762 DDE_Tnp_IS1595: ISXO2 60.7 44 0.00096 31.5 8.3 67 379-455 5-86 (151)
25 COG3316 Transposase and inacti 57.8 19 0.00042 36.4 5.3 76 377-463 70-146 (215)
26 PF00564 PB1: PB1 domain; Int 56.6 4.9 0.00011 33.9 0.8 36 38-73 16-51 (84)
27 PF13565 HTH_32: Homeodomain-l 54.6 21 0.00046 29.4 4.4 39 267-305 33-76 (77)
28 COG5431 Uncharacterized metal- 52.5 25 0.00054 31.2 4.4 36 610-647 35-76 (117)
29 PF11470 TUG-UBL1: GLUT4 regul 50.3 14 0.00031 30.1 2.5 34 39-72 12-45 (65)
30 cd06411 PB1_p51 The PB1 domain 46.7 13 0.00028 31.4 1.8 37 38-74 11-47 (78)
31 COG4279 Uncharacterized conser 40.1 13 0.00028 38.2 1.0 24 625-651 124-147 (266)
32 cd06407 PB1_NLP A PB1 domain i 38.0 33 0.00072 29.3 3.0 34 39-72 15-49 (82)
33 cd01615 CIDE_N CIDE_N domain, 35.0 37 0.0008 28.7 2.7 24 45-68 22-45 (78)
34 cd06398 PB1_Joka2 The PB1 doma 33.5 31 0.00068 30.1 2.2 30 42-71 23-53 (91)
35 cd06539 CIDE_N_A CIDE_N domain 32.0 43 0.00092 28.4 2.6 25 44-68 21-45 (78)
36 PF14201 DUF4318: Domain of un 31.8 68 0.0015 26.9 3.8 32 186-217 11-42 (74)
37 COG4715 Uncharacterized conser 29.7 1.1E+02 0.0024 35.3 6.1 64 589-655 30-100 (587)
38 PF02196 RBD: Raf-like Ras-bin 29.3 61 0.0013 26.8 3.2 34 37-70 14-47 (71)
39 PF14039 YusW: YusW-like prote 27.7 51 0.0011 28.9 2.5 36 37-72 55-90 (92)
40 PF06782 UPF0236: Uncharacteri 26.8 8E+02 0.017 28.1 12.7 118 417-545 235-377 (470)
41 smart00266 CAD Domains present 24.9 68 0.0015 26.9 2.6 24 45-68 20-43 (74)
42 PF02017 CIDE-N: CIDE-N domain 21.2 77 0.0017 26.9 2.3 24 45-68 22-45 (78)
43 smart00455 RBD Raf-like Ras-bi 20.4 87 0.0019 25.8 2.4 32 38-69 14-45 (70)
No 1
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=100.00 E-value=2.9e-64 Score=584.36 Aligned_cols=449 Identities=13% Similarity=0.131 Sum_probs=360.7
Q ss_pred CcccccCceeCCHHHHHHHHHHHHHHcCeeEEEEeecce-------EEEEEecc--------------------------
Q 037723 180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTST-------FISCECSD-------------------------- 226 (714)
Q Consensus 180 ~~~~~vG~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~~-------r~~~~C~~-------------------------- 226 (714)
+.++.+||+|.|.++++++|..||...||.+|+.++.+. ..+++|++
T Consensus 71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~ 150 (846)
T PLN03097 71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG 150 (846)
T ss_pred CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence 445899999999999999999999999999988655432 23456654
Q ss_pred --------CCCceEEEEEEecCCCeEEEeeeCCCCcccCccccCCcCchhhHHHHhhhhhcCCCCCHHHHHHHHHHhcC-
Q 037723 227 --------LMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSG- 297 (714)
Q Consensus 227 --------~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~~~~~~~ss~~ia~~~~~~i~~~p~~~~~~I~~~l~~~~g- 297 (714)
+|||++|.+.+ ...+.|.|..++.+|||++...... + ...+.+...+....+
T Consensus 151 ~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~~-~-----------------~~~r~~~~~~~~~~~~ 211 (846)
T PLN03097 151 TGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQAV-S-----------------EQTRKMYAAMARQFAE 211 (846)
T ss_pred cccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCcccc-c-----------------hhhhhhHHHHHhhhhc
Confidence 47999999977 4568899999999999999865421 1 011122222222111
Q ss_pred ---CCh-h------hhhhHHhhHHHHHHhhcchhhhHHHHHHHHHHHHhcCCCcEEEEEecccCCCCccccceeEEechH
Q 037723 298 ---FKY-P------TWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFAD 367 (714)
Q Consensus 298 ---isy-k------~~rak~~~~~~~~~~~g~~~~~y~~L~~y~~~l~~~NPgs~~~v~~~~~~~~~~~~f~~lF~~~~~ 367 (714)
+.. + ..+.+++ + + ..++.+.|..|+++++..||+|+|.+++| ++ ++++++||+++.
T Consensus 212 ~~~v~~~~~d~~~~~~~~r~~-----~-~---~~gD~~~ll~yf~~~q~~nP~Ffy~~qlD----e~-~~l~niFWaD~~ 277 (846)
T PLN03097 212 YKNVVGLKNDSKSSFDKGRNL-----G-L---EAGDTKILLDFFTQMQNMNSNFFYAVDLG----ED-QRLKNLFWVDAK 277 (846)
T ss_pred cccccccchhhcchhhHHHhh-----h-c---ccchHHHHHHHHHHHHhhCCCceEEEEEc----cC-CCeeeEEeccHH
Confidence 111 0 0011111 1 1 23466789999999999999999999999 56 899999999999
Q ss_pred hhHHHhhhCCcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEE
Q 037723 368 CSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICI 447 (714)
Q Consensus 368 s~~~f~~~~r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~i 447 (714)
|+.+|.+ |++||.||+||++|+|++||.++||+|+|+|+++|||||+.+|+.|+|.|+|++|+++|++ ..|.+|
T Consensus 278 sr~~Y~~-FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~g-----k~P~tI 351 (846)
T PLN03097 278 SRHDYGN-FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGG-----QAPKVI 351 (846)
T ss_pred HHHHHHh-cCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCC-----CCCceE
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999985 689999
Q ss_pred EcCCchHHHHHHHHHH-------------HHHHhhCC-----CchhhhHHHHHHh-hhhHHHHHHHHHHHhh-cCchhhh
Q 037723 448 MCDRDNGVDEAVSDLY-------------NKLKEQFP-----LAPVYSLFWAACS-RTNKVTFQQHMMLLQD-RNKDCYG 507 (714)
Q Consensus 448 isD~~~gl~~Ai~~vf-------------~n~~~~~~-----~~~l~~~~~~~~~-a~t~~eF~~~~~~l~~-~~~~~~~ 507 (714)
|||++.+|.+||++|| +|..+++. .+.|...|++|++ +.+++||+..|..|.+ ++.+.++
T Consensus 352 iTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~ 431 (846)
T PLN03097 352 ITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDE 431 (846)
T ss_pred EecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccH
Confidence 9999999999999999 33444432 3588899999887 6799999999999976 7899999
Q ss_pred HHhcc--ccccceecccCCCcccccccCChhHHHHHHHhhh--hcCCHHHHHHHHHHHHHHHHHHhhhhhhh--------
Q 037723 508 WLINR--EYHCWALYCMPEWAKSTDITISAAEQLRSWLLKY--LDMNVANRFTAITRETVKIFEKSYLAGWD-------- 575 (714)
Q Consensus 508 ~L~~~--~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~ik~~--r~~pi~~lve~i~~~~~~~f~r~k~~~~~-------- 575 (714)
||..+ .+++|+++|+++.++.|+.||+++||+|++|++. +..+|..|++.+ .+++.......+...+
T Consensus 432 WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qy-e~~l~~~~ekE~~aD~~s~~~~P~ 510 (846)
T PLN03097 432 WMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQY-ETILQDRYEEEAKADSDTWNKQPA 510 (846)
T ss_pred HHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHH-HHHHHHHHHHHHHhhhhcccCCcc
Confidence 99996 7999999999999999999999999999999994 678899998887 4444322111111111
Q ss_pred ------hhc---cCCChHHHHHHHHHHHhcCccceEEeec-C---ceEEEEe--CCeEEEEecC----Cccccccccccc
Q 037723 576 ------WVR---DNITPAARQQTIQNVIEGDRWNIHSGAN-S---NILTVTM--NGLSFVVNKE----LSVCSCCLWQLS 636 (714)
Q Consensus 576 ------~~r---~~~tp~~~~~klq~~~~~s~~~~v~~~~-~---~~feV~~--~~~~~~V~l~----~~tCSC~~~q~~ 636 (714)
.++ ..|||.+|+ +||+++..+..|.+...+ + .+|.|.+ ....|.|..+ +.+|+|++|+..
T Consensus 511 l~t~~piEkQAs~iYT~~iF~-kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~ 589 (846)
T PLN03097 511 LKSPSPLEKSVSGVYTHAVFK-KFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYK 589 (846)
T ss_pred cccccHHHHHHHHHhHHHHHH-HHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecC
Confidence 111 129999999 999999999988876543 2 3788876 3456777553 689999999999
Q ss_pred cCcccchhhHHHHhcC--Ccccccccceehhhhhh
Q 037723 637 GIPCSHACQCIIRWAG--GYHDFVHVSMKIDVYRS 669 (714)
Q Consensus 637 GiPC~Haiav~~~~~~--~~~~yV~~~yt~~~~~~ 669 (714)
||||+|||+|+...++ +|..||.++||+++-..
T Consensus 590 GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~ 624 (846)
T PLN03097 590 GYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSR 624 (846)
T ss_pred ccchhhHHHHHhhcCcccCchhhhhhhchhhhhhc
Confidence 9999999999999997 79999999999998654
No 2
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=99.67 E-value=2e-16 Score=130.23 Aligned_cols=67 Identities=25% Similarity=0.545 Sum_probs=64.7
Q ss_pred CcccccCceeCCHHHHHHHHHHHHHHcCeeEEEEeecceEEEEEeccCCCceEEEEEEecCCCeEEE
Q 037723 180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVL 246 (714)
Q Consensus 180 ~~~~~vG~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~~r~~~~C~~~gCpWri~as~~~~~~~~~V 246 (714)
||.|.+||+|+|++||+.||..||++++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus 1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I 67 (67)
T PF03108_consen 1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI 67 (67)
T ss_pred CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999999986
No 3
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=99.55 E-value=1.4e-14 Score=127.08 Aligned_cols=73 Identities=29% Similarity=0.418 Sum_probs=69.8
Q ss_pred ceeeccCCCcceeE---EEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHHHHHH
Q 037723 384 GWEIDSPYKSVMLV---AVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS 460 (714)
Q Consensus 384 ~T~~~~ky~g~Ll~---avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~~Ai~ 460 (714)
|||++|+| |+++. ++|+|++|+.+|+||+++++|+.++|.|||+.+++.++. . |.+||||+++|+.+||+
T Consensus 1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-----~-p~~ii~D~~~~~~~Ai~ 73 (93)
T PF10551_consen 1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-----K-PKVIISDFDKALINAIK 73 (93)
T ss_pred Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-----C-ceeeeccccHHHHHHHH
Confidence 79999999 99886 999999999999999999999999999999999999874 4 99999999999999999
Q ss_pred HHH
Q 037723 461 DLY 463 (714)
Q Consensus 461 ~vf 463 (714)
++|
T Consensus 74 ~vf 76 (93)
T PF10551_consen 74 EVF 76 (93)
T ss_pred HHC
Confidence 999
No 4
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=99.49 E-value=1.3e-14 Score=159.73 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=136.6
Q ss_pred CcEEEeeceeeccCCC-----cceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCC
Q 037723 377 RRLVIVDGWEIDSPYK-----SVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDR 451 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~-----g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~ 451 (714)
-++|.+||+|.+.+.+ ..+++|+|+|.+|+..+||+.+.+.|+.++|.-||+.|++..- ..|..||+|+
T Consensus 162 y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl------~~~~lvv~Dg 235 (381)
T PF00872_consen 162 YPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGL------KDILLVVSDG 235 (381)
T ss_pred ccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccc------cccceeeccc
Confidence 4789999999998754 4689999999999999999999999999999999999998743 3589999999
Q ss_pred chHHHHHHHHHH-------------HHHHhhCCC---chhhhHHHHHHhhhhHHHHHHHHHHHhh----cCchhhhHHhc
Q 037723 452 DNGVDEAVSDLY-------------NKLKEQFPL---APVYSLFWAACSRTNKVTFQQHMMLLQD----RNKDCYGWLIN 511 (714)
Q Consensus 452 ~~gl~~Ai~~vf-------------~n~~~~~~~---~~l~~~~~~~~~a~t~~eF~~~~~~l~~----~~~~~~~~L~~ 511 (714)
++||..||+.+| +|+.++.+. +.+...++.+..+.+.++..+.++.+.+ ..|.+.++|.+
T Consensus 236 ~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~ 315 (381)
T PF00872_consen 236 HKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEE 315 (381)
T ss_pred cccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhh
Confidence 999999999999 666666643 3666677777777777777666666543 57899999998
Q ss_pred cccccceecccCCCcccccccCChhHHHHHHHhhh
Q 037723 512 REYHCWALYCMPEWAKSTDITISAAEQLRSWLLKY 546 (714)
Q Consensus 512 ~~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~ik~~ 546 (714)
...+.|+..-|+...+--+.|||.+||+|+.||+.
T Consensus 316 ~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr 350 (381)
T PF00872_consen 316 NWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRR 350 (381)
T ss_pred ccccccceeeecchhccccchhhhccccccchhhh
Confidence 77788888778877666788999999999999983
No 5
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=98.87 E-value=6.2e-09 Score=113.06 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=122.4
Q ss_pred CCcEEEeeceeeccC--CCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCch
Q 037723 376 CRRLVIVDGWEIDSP--YKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDN 453 (714)
Q Consensus 376 ~r~Vi~iD~T~~~~k--y~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~ 453 (714)
..+++.+||+|++.+ -+.++++|+|++.+|+...+++.+-+.|+ ..|.-||..|+...- .....+++|.++
T Consensus 144 ~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl------~~v~l~v~Dg~~ 216 (379)
T COG3328 144 DYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGL------SDVLLVVVDGLK 216 (379)
T ss_pred CceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccc------cceeEEecchhh
Confidence 578999999999998 45679999999999999999999999999 999988888887733 235677889999
Q ss_pred HHHHHHHHHH-------------HHHHhhCCCc---hhhhHHHHHHhhhhHHH----HHHHHHHHhhcCchhhhHHhccc
Q 037723 454 GVDEAVSDLY-------------NKLKEQFPLA---PVYSLFWAACSRTNKVT----FQQHMMLLQDRNKDCYGWLINRE 513 (714)
Q Consensus 454 gl~~Ai~~vf-------------~n~~~~~~~~---~l~~~~~~~~~a~t~~e----F~~~~~~l~~~~~~~~~~L~~~~ 513 (714)
||.+||..+| +|+..+.+.+ .....+..+..+.+.++ |+...+.+....|...+|+.+.-
T Consensus 217 gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~ 296 (379)
T COG3328 217 GLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNAL 296 (379)
T ss_pred hhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 9999999999 4444444433 22233333333444443 44444444556788888888876
Q ss_pred cccceecccCCCcccccccCChhHHHHHHHhh
Q 037723 514 YHCWALYCMPEWAKSTDITISAAEQLRSWLLK 545 (714)
Q Consensus 514 ~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~ik~ 545 (714)
.+.|...-|+...+--+.|||..|++|+.++.
T Consensus 297 ~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~ 328 (379)
T COG3328 297 EELLPFFAFPSEIRKIIYTTNAIESLNKLIRR 328 (379)
T ss_pred HHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence 67777666665544568899999999998875
No 6
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=98.84 E-value=1e-09 Score=73.77 Aligned_cols=27 Identities=48% Similarity=0.843 Sum_probs=25.1
Q ss_pred ccccccccccccCcccchhhHHHHhcC
Q 037723 626 SVCSCCLWQLSGIPCSHACQCIIRWAG 652 (714)
Q Consensus 626 ~tCSC~~~q~~GiPC~Haiav~~~~~~ 652 (714)
++|||++||..||||+|+|+|+...++
T Consensus 1 ~~CsC~~~~~~gipC~H~i~v~~~~~~ 27 (28)
T smart00575 1 KTCSCRKFQLSGIPCRHALAAAIHIGL 27 (28)
T ss_pred CcccCCCcccCCccHHHHHHHHHHhCC
Confidence 489999999999999999999998875
No 7
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=98.54 E-value=4.5e-07 Score=80.13 Aligned_cols=69 Identities=14% Similarity=0.286 Sum_probs=65.4
Q ss_pred eCCHHHHHHHHHHHHHHcCeeEEEEeecceEEEEEecc------------------------------------------
Q 037723 189 FKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSD------------------------------------------ 226 (714)
Q Consensus 189 F~s~ee~r~ai~~yAi~~~f~ir~~ks~~~r~~~~C~~------------------------------------------ 226 (714)
|.+++|++..|+.++...|++|.+.+||...+.++|..
T Consensus 1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk 80 (111)
T PF08731_consen 1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK 80 (111)
T ss_pred CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence 78999999999999999999999999999999999984
Q ss_pred CCCceEEEEEEecCCCeEEEeeeCCCCcccC
Q 037723 227 LMCDWKVSAAKVRKSNVFVLKEITPNYTCKR 257 (714)
Q Consensus 227 ~gCpWri~as~~~~~~~~~V~~~~~~HnC~~ 257 (714)
..|||+|+|......+.|.|+.+++.|+|++
T Consensus 81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l 111 (111)
T PF08731_consen 81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL 111 (111)
T ss_pred cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence 1699999999999999999999999999985
No 8
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=98.37 E-value=8.7e-07 Score=77.33 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCeeEEEEeecce-------EEEEEecc----------------------CCCceEEEEEEecCCCeEEEe
Q 037723 197 TAVDIQAMRDGIKLCVMENTST-------FISCECSD----------------------LMCDWKVSAAKVRKSNVFVLK 247 (714)
Q Consensus 197 ~ai~~yAi~~~f~ir~~ks~~~-------r~~~~C~~----------------------~gCpWri~as~~~~~~~~~V~ 247 (714)
++|..||...||.++..++.+. ++.++|+. .||||+|.+.+.. .+.|.|.
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~ 79 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT 79 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence 4789999999999999876654 78899997 3899999999877 9999999
Q ss_pred eeCCCCcccCc
Q 037723 248 EITPNYTCKRR 258 (714)
Q Consensus 248 ~~~~~HnC~~~ 258 (714)
.+..+|||++.
T Consensus 80 ~~~~~HNH~L~ 90 (91)
T PF03101_consen 80 SFVLEHNHPLC 90 (91)
T ss_pred ECcCCcCCCCC
Confidence 99999999975
No 9
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=98.07 E-value=2.1e-06 Score=62.95 Aligned_cols=30 Identities=33% Similarity=0.723 Sum_probs=27.4
Q ss_pred EecCCccccccccccccCcccchhhHHHHh
Q 037723 621 VNKELSVCSCCLWQLSGIPCSHACQCIIRW 650 (714)
Q Consensus 621 V~l~~~tCSC~~~q~~GiPC~Haiav~~~~ 650 (714)
+++...+|||..|+..|.||+|++|++...
T Consensus 10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~ 39 (40)
T PF04434_consen 10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL 39 (40)
T ss_pred ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence 667789999999999999999999999764
No 10
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=97.47 E-value=5.9e-05 Score=66.41 Aligned_cols=61 Identities=7% Similarity=0.009 Sum_probs=53.3
Q ss_pred cCCCCchhhhHhhccchHHHHHHHhhhccccCCCceEEEeeccccccc-cccCCcCCCccchHHH
Q 037723 29 KTSPRNCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDA-LKDVDESDNVGHSLVN 92 (714)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (714)
.+|.|.+. +|.++||+.||++|+++.++++.+ ++++|+.|+..-+ |.++.+|+++.+|+.+
T Consensus 20 ~GG~tr~i--~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edld~Lisv~~DeDl~~M~~e 81 (97)
T cd06410 20 VGGETRIV--SVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDLDALISVSNDEDLKNMMEE 81 (97)
T ss_pred cCCceEEE--EEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCcceeEEecCcHHHHHHHHh
Confidence 46667766 999999999999999999999988 9999999887755 9999999999888755
No 11
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=91.84 E-value=0.35 Score=38.78 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=32.9
Q ss_pred ceEEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCccc
Q 037723 217 STFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCK 256 (714)
Q Consensus 217 ~~r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~ 256 (714)
-.|--++|+..+||++-.+.+..++....+.++..+|||+
T Consensus 20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 3567799999999999999988878888899999999997
No 12
>PF13610 DDE_Tnp_IS240: DDE domain
Probab=91.39 E-value=0.067 Score=50.59 Aligned_cols=78 Identities=19% Similarity=0.085 Sum_probs=65.1
Q ss_pred CcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723 377 RRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD 456 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~ 456 (714)
++.+.+|-||.+.+-+ ..+..-.+|.+++ .|++-|.+.-+...=..||..+.+... ..|..|+||+.++..
T Consensus 1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~------~~p~~ivtDk~~aY~ 71 (140)
T PF13610_consen 1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR------GEPRVIVTDKLPAYP 71 (140)
T ss_pred CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec------cccceeecccCCccc
Confidence 3678999999987654 3445778899999 899999999999999999988887764 369999999999999
Q ss_pred HHHHHHH
Q 037723 457 EAVSDLY 463 (714)
Q Consensus 457 ~Ai~~vf 463 (714)
.|++++.
T Consensus 72 ~A~~~l~ 78 (140)
T PF13610_consen 72 AAIKELN 78 (140)
T ss_pred hhhhhcc
Confidence 9997665
No 13
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus
Probab=91.24 E-value=0.35 Score=53.29 Aligned_cols=57 Identities=9% Similarity=0.158 Sum_probs=51.1
Q ss_pred cccCceeCCHHHHHHHHHHHHHHcCeeEEEEeecc-eEEEEEeccCCCceEEEEEEec
Q 037723 183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTS-TFISCECSDLMCDWKVSAAKVR 239 (714)
Q Consensus 183 ~~vG~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~-~r~~~~C~~~gCpWri~as~~~ 239 (714)
-..+..|++.++-..+|..|....+..|..+.|-+ +.+++.|.-..|||+|.++..+
T Consensus 22 ~~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g 79 (496)
T PF04684_consen 22 SAQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG 79 (496)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence 44578899999999999999999999999988864 6899999999999999998654
No 14
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=88.22 E-value=0.28 Score=41.51 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=31.2
Q ss_pred hhHhhccchHHHHHHHhhhccccCCCceEEEeecc
Q 037723 37 QMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDT 71 (714)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (714)
.+.+..++||.++++|+..++++..++++++|.++
T Consensus 14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 34677899999999999999999999999999964
No 15
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=81.69 E-value=2.6 Score=33.14 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=24.7
Q ss_pred cCeeEEEEeecceEEEEEeccC---CCceEEEEEEecCCCeEEEeeeCCCCcc
Q 037723 206 DGIKLCVMENTSTFISCECSDL---MCDWKVSAAKVRKSNVFVLKEITPNYTC 255 (714)
Q Consensus 206 ~~f~ir~~ks~~~r~~~~C~~~---gCpWri~as~~~~~~~~~V~~~~~~HnC 255 (714)
.|+.|...+.........|... +|+++|... .+. ..|.....+|||
T Consensus 14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~~~--~~~~~~~~~HnH 62 (62)
T PF04500_consen 14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--AGD--GRVVRTNGEHNH 62 (62)
T ss_dssp TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE----T--TEEEE-S---SS
T ss_pred CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--CCC--CEEEECCCccCC
Confidence 4777777777788889999975 899999987 222 334455578887
No 16
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=81.55 E-value=2.1 Score=34.18 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=31.6
Q ss_pred eEEEEEecc-CCCceEEEEEEecCCCeEEEeeeCCCCcc
Q 037723 218 TFISCECSD-LMCDWKVSAAKVRKSNVFVLKEITPNYTC 255 (714)
Q Consensus 218 ~r~~~~C~~-~gCpWri~as~~~~~~~~~V~~~~~~HnC 255 (714)
.|--++|+. .|||++=.+.+..++....+.++..+|||
T Consensus 21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 456789998 89999888887766667778899999998
No 17
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=81.08 E-value=0.54 Score=39.80 Aligned_cols=41 Identities=2% Similarity=0.052 Sum_probs=35.8
Q ss_pred hhhhHhhccchHHHHHHHhhhccccCCCceEEEeecccccc
Q 037723 35 CFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVID 75 (714)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (714)
++-|-|..+++|++...|++++|.+..+.+++.|.++..-+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~ 52 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGE 52 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCC
Confidence 56677899999999999999999999999999999765444
No 18
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=81.00 E-value=16 Score=32.57 Aligned_cols=76 Identities=16% Similarity=-0.018 Sum_probs=55.3
Q ss_pred CCcEEEeeceeecc-CCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchH
Q 037723 376 CRRLVIVDGWEIDS-PYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNG 454 (714)
Q Consensus 376 ~r~Vi~iD~T~~~~-ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~g 454 (714)
...++.+|.++... ..++..+..+.+|..-.. .+++.+-..++.+.+.-+|.......+. ..|.+|+||+.++
T Consensus 5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~p~~i~tD~g~~ 78 (120)
T PF00665_consen 5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRGG-----RPPRVIRTDNGSE 78 (120)
T ss_dssp TTTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS------SE-SEEEEESCHH
T ss_pred CCCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccccc-----ccceecccccccc
Confidence 45689999997763 455688888999977654 5678888887888888888766666542 1289999999998
Q ss_pred HHH
Q 037723 455 VDE 457 (714)
Q Consensus 455 l~~ 457 (714)
...
T Consensus 79 f~~ 81 (120)
T PF00665_consen 79 FTS 81 (120)
T ss_dssp HHS
T ss_pred ccc
Confidence 764
No 19
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=80.75 E-value=0.66 Score=39.89 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=39.3
Q ss_pred chhhhHhhccchHHHHHHHhhhccccCCCceEEEeeccccccccccCCcCC
Q 037723 34 NCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDALKDVDESD 84 (714)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (714)
.+..|.|+-.++|++|..|+.+++++. +.+++-|-|+-++=.+-+.+|++
T Consensus 12 Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDEGD~iti~sq~DLd 61 (86)
T cd06408 12 DTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDDGDMITMGDQDDLD 61 (86)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcCCCCccccCHHHHH
Confidence 456678999999999999999999996 78999998775444555555443
No 20
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=76.29 E-value=2.1 Score=35.86 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=28.3
Q ss_pred ccchHHHHHHHhhhccccCCCceEEEeeccc
Q 037723 42 QQMRDVLILSMAVDSKNASEQSTRVHISDTE 72 (714)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (714)
+++||.++.+++++++++....+++.|.+++
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e 49 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDAVSFKLKYPDED 49 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCC
Confidence 8999999999999999998888888888755
No 21
>PHA02517 putative transposase OrfB; Reviewed
Probab=75.05 E-value=56 Score=34.19 Aligned_cols=73 Identities=12% Similarity=-0.046 Sum_probs=47.1
Q ss_pred CCcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHH
Q 037723 376 CRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGV 455 (714)
Q Consensus 376 ~r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl 455 (714)
-..++..|.||+...- |..+.++-+|.... +++||.+...++.+...-+|+......+. ..+.+|.||+....
T Consensus 109 pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~l~~a~~~~~~-----~~~~i~~sD~G~~y 181 (277)
T PHA02517 109 PNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDALEQALWARGR-----PGGLIHHSDKGSQY 181 (277)
T ss_pred CCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHHHHHHHHhcCC-----CcCcEeeccccccc
Confidence 3568999999986543 56677777776654 56788888888887544444433333221 12356779987753
No 22
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=72.03 E-value=1.3e+02 Score=31.43 Aligned_cols=74 Identities=9% Similarity=-0.001 Sum_probs=50.4
Q ss_pred CcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEeccc-CCHHHHHHHHHHHH-Hhccc-cccCCCCcEEEEcCCch
Q 037723 377 RRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE-ENFDSWSFFLKNLY-EGLCM-DYMDYGKGICIMCDRDN 453 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~-E~~esw~WfL~~l~-~~l~~-~~~~~~~~~~iisD~~~ 453 (714)
-.+++.|-||..-..++.++.++-+|.... .++||++-.. .+.+.-.-+|+... ...+. .. ..|.+|.||+..
T Consensus 87 n~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~~~~~~~~~~---~~~~iihSD~Gs 162 (262)
T PRK14702 87 NQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLP---SSPVEWLTDNGS 162 (262)
T ss_pred CCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHHHHHhcccCC---CCCeEEEcCCCc
Confidence 468999999987654446888888887766 7899999874 56666655665433 32221 11 357889999886
Q ss_pred H
Q 037723 454 G 454 (714)
Q Consensus 454 g 454 (714)
.
T Consensus 163 q 163 (262)
T PRK14702 163 C 163 (262)
T ss_pred c
Confidence 4
No 23
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=70.15 E-value=1.4e+02 Score=31.86 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=52.1
Q ss_pred CCcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEeccc-CCHHHHHHHHHH-HHHhccccccCCCCcEEEEcCCch
Q 037723 376 CRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE-ENFDSWSFFLKN-LYEGLCMDYMDYGKGICIMCDRDN 453 (714)
Q Consensus 376 ~r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~-E~~esw~WfL~~-l~~~l~~~~~~~~~~~~iisD~~~ 453 (714)
--.|++.|-||....-++.++.++-+|.... .+|||++... .+.+.-.-+|+. +....+... ...|.+|-||+..
T Consensus 125 pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~~~~~~~--~~~~~iihSDrGs 201 (301)
T PRK09409 125 SNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDL--PSSPVEWLTDNGS 201 (301)
T ss_pred CCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHHHhccCC--CCCCcEEecCCCc
Confidence 4568999999986554456888888888776 6899999876 576666556654 433322100 0357889999887
Q ss_pred H
Q 037723 454 G 454 (714)
Q Consensus 454 g 454 (714)
.
T Consensus 202 q 202 (301)
T PRK09409 202 C 202 (301)
T ss_pred c
Confidence 4
No 24
>PF12762 DDE_Tnp_IS1595: ISXO2-like transposase domain; InterPro: IPR024445 This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.
Probab=60.70 E-value=44 Score=31.48 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=37.1
Q ss_pred EEEeeceeeccCC--------------CcceeEEEEEcCC-CCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCC
Q 037723 379 LVIVDGWEIDSPY--------------KSVMLVAVFRDAN-NAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGK 443 (714)
Q Consensus 379 Vi~iD~T~~~~ky--------------~g~Ll~avG~D~n-~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~ 443 (714)
+|-+|.||+.++- .....++++++-+ +..--+-..++++.+.++-.=+++ ..+ .+
T Consensus 5 ~VEiDEty~~~~~~~~~~~~~~~gr~~~~k~~V~~~ver~~~~~~~~~~~~v~~~~~~tl~~~i~---~~i-------~~ 74 (151)
T PF12762_consen 5 IVEIDETYFGGRKNKKPRRKGKRGRGSKNKVPVFGAVERNDGGTGRVFMFVVPDRSAETLKPIIQ---EHI-------EP 74 (151)
T ss_pred EEEeCcCEECCcccccccCCCCCCCcCCCCcEEEEEEeecccCCceEEEEeecccccchhHHHHH---Hhh-------hc
Confidence 6788888886432 2233444444444 323333344556677776544433 333 24
Q ss_pred cEEEEcCCchHH
Q 037723 444 GICIMCDRDNGV 455 (714)
Q Consensus 444 ~~~iisD~~~gl 455 (714)
..+|+||..++-
T Consensus 75 gs~i~TD~~~aY 86 (151)
T PF12762_consen 75 GSTIITDGWRAY 86 (151)
T ss_pred cceeeecchhhc
Confidence 578899988763
No 25
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=57.85 E-value=19 Score=36.41 Aligned_cols=76 Identities=21% Similarity=0.095 Sum_probs=56.3
Q ss_pred CcEEEeeceeeccCCCcc-eeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHH
Q 037723 377 RRLVIVDGWEIDSPYKSV-MLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGV 455 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~g~-Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl 455 (714)
++++.+|-||++.+-+.. |+-| +|.+| .++-+-+...-|...=.-||..+++.-+ .|.+|+||+.+..
T Consensus 70 ~~~w~vDEt~ikv~gkw~ylyrA--id~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~g-------~p~v~vtDka~s~ 138 (215)
T COG3316 70 GDSWRVDETYIKVNGKWHYLYRA--IDADG--LTLDVWLSKRRNALAAKAFLKKLLKKHG-------EPRVFVTDKAPSY 138 (215)
T ss_pred ccceeeeeeEEeeccEeeehhhh--hccCC--CeEEEEEEcccCcHHHHHHHHHHHHhcC-------CCceEEecCccch
Confidence 457889999998765543 4444 45554 4677888888888888888887776653 5899999999999
Q ss_pred HHHHHHHH
Q 037723 456 DEAVSDLY 463 (714)
Q Consensus 456 ~~Ai~~vf 463 (714)
..|+.++-
T Consensus 139 ~~A~~~l~ 146 (215)
T COG3316 139 TAALRKLG 146 (215)
T ss_pred HHHHHhcC
Confidence 99986544
No 26
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=56.64 E-value=4.9 Score=33.92 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=31.6
Q ss_pred hHhhccchHHHHHHHhhhccccCCCceEEEeecccc
Q 037723 38 MAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEV 73 (714)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (714)
+.+..++|+.++.+++.+++++....+++.|.+.+.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg 51 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG 51 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC
Confidence 356788999999999999999999999999986544
No 27
>PF13565 HTH_32: Homeodomain-like domain
Probab=54.61 E-value=21 Score=29.38 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=31.9
Q ss_pred hhhHHHHhhhhhcCCCCCHHHHHHHHHHhcC--C--Ch-hhhhh
Q 037723 267 KWNAAKFLHLWVQNPNIDFHRLRYEIETYSG--F--KY-PTWKL 305 (714)
Q Consensus 267 ~~ia~~~~~~i~~~p~~~~~~I~~~l~~~~g--i--sy-k~~ra 305 (714)
..+.+.+.+.+..+|.|++.+|.+.|.+++| + |. ++||.
T Consensus 33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~ 76 (77)
T PF13565_consen 33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI 76 (77)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence 4444667778888999999999999999999 5 77 77763
No 28
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=52.50 E-value=25 Score=31.18 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=25.1
Q ss_pred EEEEe-CCeEEEEecCCccccccccc----c-ccCcccchhhHH
Q 037723 610 LTVTM-NGLSFVVNKELSVCSCCLWQ----L-SGIPCSHACQCI 647 (714)
Q Consensus 610 feV~~-~~~~~~V~l~~~tCSC~~~q----~-~GiPC~Haiav~ 647 (714)
|.|-- .++.|+++.+ -|||..|- + ---||.|+++.=
T Consensus 35 ~fVyvG~~rdYIl~~g--fCSCp~~~~svvl~Gk~~C~Hi~glk 76 (117)
T COG5431 35 FFVYVGKERDYILEGG--FCSCPDFLGSVVLKGKSPCAHIIGLK 76 (117)
T ss_pred EEEEEccccceEEEcC--cccCHHHHhHhhhcCcccchhhhhee
Confidence 44444 4568988887 89998776 2 235799998753
No 29
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=50.27 E-value=14 Score=30.10 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=25.1
Q ss_pred HhhccchHHHHHHHhhhccccCCCceEEEeeccc
Q 037723 39 AIGQQMRDVLILSMAVDSKNASEQSTRVHISDTE 72 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (714)
-|..+++-.+.+..||.+++++++.+.+-+-.+.
T Consensus 12 kvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ 45 (65)
T PF11470_consen 12 KVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKP 45 (65)
T ss_dssp ---TTSBHHHHHHHHHHHTT--GGG-EEEETTEE
T ss_pred EECCCCCHHHHHHHHHHHcCCCccceEEEECCEE
Confidence 5788999999999999999999999888887643
No 30
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=46.66 E-value=13 Score=31.40 Aligned_cols=37 Identities=3% Similarity=-0.074 Sum_probs=33.7
Q ss_pred hHhhccchHHHHHHHhhhccccCCCceEEEeeccccc
Q 037723 38 MAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVI 74 (714)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (714)
|-|.+|.+|+++.-++.++|.+..+.+++.|..+.+.
T Consensus 11 i~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~ 47 (78)
T cd06411 11 LRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED 47 (78)
T ss_pred EEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC
Confidence 5678999999999999999999999999999977665
No 31
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=40.15 E-value=13 Score=38.20 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.2
Q ss_pred CccccccccccccCcccchhhHHHHhc
Q 037723 625 LSVCSCCLWQLSGIPCSHACQCIIRWA 651 (714)
Q Consensus 625 ~~tCSC~~~q~~GiPC~Haiav~~~~~ 651 (714)
...|||.-|. .||.|+.||....+
T Consensus 124 ~~dCSCPD~a---nPCKHi~AvyY~la 147 (266)
T COG4279 124 STDCSCPDYA---NPCKHIAAVYYLLA 147 (266)
T ss_pred ccccCCCCcc---cchHHHHHHHHHHH
Confidence 4679998765 69999999998876
No 32
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=38.02 E-value=33 Score=29.27 Aligned_cols=34 Identities=3% Similarity=-0.045 Sum_probs=28.8
Q ss_pred HhhccchHHHHHHHhhhccccCC-CceEEEeeccc
Q 037723 39 AIGQQMRDVLILSMAVDSKNASE-QSTRVHISDTE 72 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 72 (714)
.+.-+++++++.+++.++|+++. +.+++.|.|.+
T Consensus 15 ~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 15 RLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 45567899999999999999987 89999998643
No 33
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=34.96 E-value=37 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhccccCCCceEEEe
Q 037723 45 RDVLILSMAVDSKNASEQSTRVHI 68 (714)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~ 68 (714)
|.+|..+|+|++|++.+...++.-
T Consensus 22 sL~eL~~K~~~~l~l~~~~~~lvL 45 (78)
T cd01615 22 SLEELLSKACEKLKLPSAPVTLVL 45 (78)
T ss_pred CHHHHHHHHHHHcCCCCCCeEEEE
Confidence 789999999999999766666655
No 34
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=33.49 E-value=31 Score=30.08 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=27.0
Q ss_pred ccchHHHHHHHhhhccccCC-CceEEEeecc
Q 037723 42 QQMRDVLILSMAVDSKNASE-QSTRVHISDT 71 (714)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (714)
..++++++..|+.+.|+|+. ..+.+.|+|.
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 47899999999999999998 7889999876
No 35
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.05 E-value=43 Score=28.36 Aligned_cols=25 Identities=8% Similarity=0.011 Sum_probs=20.6
Q ss_pred chHHHHHHHhhhccccCCCceEEEe
Q 037723 44 MRDVLILSMAVDSKNASEQSTRVHI 68 (714)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (714)
-|.+|..+|+|++|++.+...+++-
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL 45 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVL 45 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEE
Confidence 3789999999999999776666653
No 36
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=31.81 E-value=68 Score=26.90 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=27.6
Q ss_pred CceeCCHHHHHHHHHHHHHHcCeeEEEEeecc
Q 037723 186 GHKFKDEFQFRTAVDIQAMRDGIKLCVMENTS 217 (714)
Q Consensus 186 G~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~ 217 (714)
--.+||.+++-.||..|+.+++-.+.+.+.++
T Consensus 11 ~~~yPs~e~i~~aIE~YC~~~~~~l~Fisr~~ 42 (74)
T PF14201_consen 11 SPKYPSKEEICEAIEKYCIKNGESLEFISRDK 42 (74)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCceEEEecCC
Confidence 34589999999999999999999999876553
No 37
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=29.67 E-value=1.1e+02 Score=35.35 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHHHhcCccceEEeecCceE-EEEeCCeE--EEEecC----CccccccccccccCcccchhhHHHHhcCCcc
Q 037723 589 TIQNVIEGDRWNIHSGANSNIL-TVTMNGLS--FVVNKE----LSVCSCCLWQLSGIPCSHACQCIIRWAGGYH 655 (714)
Q Consensus 589 klq~~~~~s~~~~v~~~~~~~f-eV~~~~~~--~~V~l~----~~tCSC~~~q~~GiPC~Haiav~~~~~~~~~ 655 (714)
|=+...+......+. .-++++ -|..|.+. +.|.+. +..|||.. ...| =|.|++||+......|.
T Consensus 30 kG~~y~e~G~V~~i~-~~g~~v~A~V~Gs~~y~v~vtL~~~~~ss~CTCP~-~~~g-aCKH~VAvvl~~~~~p~ 100 (587)
T COG4715 30 KGEAYLEAGAVLKIT-IRGGTVRAVVEGSRRYRVRVTLEGGALSSICTCPY-GGSG-ACKHVVAVVLEYLDDPE 100 (587)
T ss_pred hhHHHHhcCCceEEe-ecCCeEEEEEeccceeeEEEEeecCCcCceeeCCC-CCCc-chHHHHHHHHHHhhccc
Confidence 333334444444444 333433 23334343 456663 58999987 4444 59999999988765433
No 38
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=29.29 E-value=61 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.3
Q ss_pred hhHhhccchHHHHHHHhhhccccCCCceEEEeec
Q 037723 37 QMAIGQQMRDVLILSMAVDSKNASEQSTRVHISD 70 (714)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (714)
.+.|-.|||-.|++++||++-||+.....+.-..
T Consensus 14 ~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 14 VVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3456789999999999999999999988887543
No 39
>PF14039 YusW: YusW-like protein
Probab=27.66 E-value=51 Score=28.87 Aligned_cols=36 Identities=3% Similarity=0.089 Sum_probs=31.8
Q ss_pred hhHhhccchHHHHHHHhhhccccCCCceEEEeeccc
Q 037723 37 QMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTE 72 (714)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (714)
++-+..+|+-.+.++.++..||++++--+|....+|
T Consensus 55 ~L~~~~~t~~~evi~~Vl~~f~Ld~dy~~felev~f 90 (92)
T PF14039_consen 55 ELSFDSDTSEEEVIDQVLKAFNLDPDYQEFELEVKF 90 (92)
T ss_pred hCCCCCCCChHHHHHHHHHHhCCCccceEEEEEEEe
Confidence 567888999999999999999999998888887665
No 40
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=26.80 E-value=8e+02 Score=28.09 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHHHHHHHHH-------------HHHHhhCC-CchhhhHHHHH
Q 037723 417 EENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLY-------------NKLKEQFP-LAPVYSLFWAA 482 (714)
Q Consensus 417 ~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~~Ai~~vf-------------~n~~~~~~-~~~l~~~~~~~ 482 (714)
..+.+-|.-+++.+........ ..-+++.+|+.+.+.+++. .+ +.+.+.+. .+.+...++++
T Consensus 235 ~~~~~~~~~v~~~i~~~Y~~~~---~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~a 310 (470)
T PF06782_consen 235 ESAEEFWEEVLDYIYNHYDLDK---TTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKA 310 (470)
T ss_pred cchHHHHHHHHHHHHHhcCccc---ceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 5667889999988888776432 2356778999999998876 33 33444442 34667767777
Q ss_pred HhhhhHHHHHHHHHHHhhc--Cc-------hhhhHHhcccccccee--cccCCCcccccccCChhHHHHHHHhh
Q 037723 483 CSRTNKVTFQQHMMLLQDR--NK-------DCYGWLINREYHCWAL--YCMPEWAKSTDITISAAEQLRSWLLK 545 (714)
Q Consensus 483 ~~a~t~~eF~~~~~~l~~~--~~-------~~~~~L~~~~~~~Wa~--a~~~~~~~~g~~TtN~~Es~N~~ik~ 545 (714)
.+.....++...++.+... .+ ++..||.+ +|.. .|-. +-|.......|+.+..+..
T Consensus 311 l~~~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~----n~~~i~~y~~---~~~~~g~g~ee~~~~~~s~ 377 (470)
T PF06782_consen 311 LKKGDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLN----NWDGIKPYRE---REGLRGIGAEESVSHVLSY 377 (470)
T ss_pred HHhcCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH----CHHHhhhhhh---ccCCCccchhhhhhhHHHH
Confidence 7777778888888777653 22 23445544 3432 1211 1233344457888877754
No 41
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=24.93 E-value=68 Score=26.90 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=20.5
Q ss_pred hHHHHHHHhhhccccCCCceEEEe
Q 037723 45 RDVLILSMAVDSKNASEQSTRVHI 68 (714)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~ 68 (714)
|.+|..+|+|++|++++...++.-
T Consensus 20 sL~eL~~K~~~~l~l~~~~~~l~L 43 (74)
T smart00266 20 SLEELLSKVCDKLALPDSPVTLVL 43 (74)
T ss_pred CHHHHHHHHHHHhCCCCCCcEEEE
Confidence 789999999999999976666654
No 42
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=21.25 E-value=77 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.9
Q ss_pred hHHHHHHHhhhccccCCCceEEEe
Q 037723 45 RDVLILSMAVDSKNASEQSTRVHI 68 (714)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~ 68 (714)
|..|.+.|+|++|+++....++.-
T Consensus 22 sL~eL~~K~~~~l~~~~~~~~lvL 45 (78)
T PF02017_consen 22 SLEELLEKACDKLQLPEEPVRLVL 45 (78)
T ss_dssp SHHHHHHHHHHHHT-SSSTCEEEE
T ss_pred CHHHHHHHHHHHhCCCCcCcEEEE
Confidence 789999999999999977777655
No 43
>smart00455 RBD Raf-like Ras-binding domain.
Probab=20.36 E-value=87 Score=25.82 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=28.3
Q ss_pred hHhhccchHHHHHHHhhhccccCCCceEEEee
Q 037723 38 MAIGQQMRDVLILSMAVDSKNASEQSTRVHIS 69 (714)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (714)
+.+--||+-.|.++++|++-|++.....+...
T Consensus 14 V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 14 VKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 45567999999999999999999999988875
Done!