Query 037723
Match_columns 714
No_of_seqs 283 out of 1200
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 89.6 0.63 2.2E-05 37.8 5.8 40 219-258 35-74 (76)
2 1wj2_A Probable WRKY transcrip 89.6 0.66 2.3E-05 37.9 5.9 40 219-258 38-77 (78)
3 1pqs_A Cell division control p 78.2 0.34 1.2E-05 39.7 -0.6 38 34-71 2-44 (77)
4 1q1o_A Cell division control p 77.4 0.24 8.4E-06 42.3 -1.8 43 29-71 18-65 (98)
5 1cxq_A Avian sarcoma virus int 71.8 29 0.00099 31.4 10.9 70 377-456 11-80 (162)
6 2rpr_A Flywch-type zinc finger 69.4 6.4 0.00022 32.6 5.2 46 207-259 27-75 (87)
7 1c0m_A Protein (integrase); HI 67.0 39 0.0013 33.0 11.4 70 377-456 10-79 (238)
8 1oey_A P67-PHOX, neutrophil cy 62.9 2.9 0.0001 34.6 1.7 37 35-71 15-51 (83)
9 1ex4_A Integrase; SH3-like dom 51.7 53 0.0018 31.9 9.2 64 378-456 10-73 (239)
10 3f9k_A Integrase; protein-prot 51.3 75 0.0026 30.0 10.0 63 378-455 60-122 (210)
11 3hot_A Transposable element ma 50.4 1E+02 0.0035 31.5 11.6 63 390-455 186-254 (345)
12 3kks_A Integrase, IN; beta-str 48.5 89 0.003 27.2 9.5 65 378-457 3-67 (152)
13 3l3u_A POL polyprotein; DNA in 40.9 83 0.0028 28.1 8.1 65 377-456 9-73 (163)
14 2al3_A TUG long isoform; TUG U 40.6 15 0.00051 30.8 2.5 32 40-71 26-57 (90)
15 2cu1_A Mitogen-activated prote 37.3 5.5 0.00019 33.9 -0.7 51 31-86 17-67 (103)
16 1bco_A MUA domain II, bacterio 35.1 80 0.0027 32.4 7.8 72 376-455 15-94 (327)
17 3av9_A Integrase, IN; protein- 30.7 1.6E+02 0.0055 26.9 8.5 66 376-456 28-93 (183)
18 1fme_A FSD-EY peptide; beta-BE 27.8 40 0.0014 20.8 2.2 19 184-202 7-25 (28)
19 2x78_A Integrase; viral protei 26.1 1.7E+02 0.006 26.8 7.9 69 378-457 14-83 (200)
20 3hph_A Integrase, IN; protein- 25.4 2.5E+02 0.0086 26.3 9.0 66 378-458 61-126 (219)
21 3goe_A DNA repair protein RAD6 24.3 56 0.0019 26.6 3.2 45 39-83 25-75 (82)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=89.58 E-value=0.63 Score=37.85 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=35.0
Q ss_pred EEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCcccCc
Q 037723 219 FISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRR 258 (714)
Q Consensus 219 r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~ 258 (714)
|--++|+..|||++-.+.+..++....+.++...|||+..
T Consensus 35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 5668999999999999998777777888999999999864
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=89.57 E-value=0.66 Score=37.92 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=34.6
Q ss_pred EEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCcccCc
Q 037723 219 FISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRR 258 (714)
Q Consensus 219 r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~ 258 (714)
|--++|+..|||++-.+.+...+....+.++...|||+..
T Consensus 38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 5568999999999999998877777778899999999863
No 3
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.19 E-value=0.34 Score=39.68 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=32.7
Q ss_pred chhhhHhhccchHHHHHHHhhhccccC-----CCceEEEeecc
Q 037723 34 NCFQMAIGQQMRDVLILSMAVDSKNAS-----EQSTRVHISDT 71 (714)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 71 (714)
.|+-++|+-+++|.+|+.|+.++|++. .+.+++.|-++
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDE 44 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE 44 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEET
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcC
Confidence 355678899999999999999999986 57789999886
No 4
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=77.44 E-value=0.24 Score=42.35 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=35.6
Q ss_pred cCCCCchhhhHhhccchHHHHHHHhhhccccC-C----CceEEEeecc
Q 037723 29 KTSPRNCFQMAIGQQMRDVLILSMAVDSKNAS-E----QSTRVHISDT 71 (714)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 71 (714)
.||-.+++.|.|+.+++|.+|+.|+.++|++. . ..+++.|-|+
T Consensus 18 ~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE 65 (98)
T 1q1o_A 18 NTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE 65 (98)
T ss_dssp SCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS
T ss_pred ccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC
Confidence 35667899999999999999999999999985 1 3468888765
No 5
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=71.83 E-value=29 Score=31.40 Aligned_cols=70 Identities=10% Similarity=-0.113 Sum_probs=47.5
Q ss_pred CcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723 377 RRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD 456 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~ 456 (714)
..++.+|-|+.... +|..+.++.+|.... +++|+.+- ..+.+.-.-+|+.+....+ .|.+|.||+.....
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g-------~p~~i~sDnG~~f~ 80 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVLG-------RPKAIKTDNGSCFT 80 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC-------CCSEEECCSCHHHH
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHHC-------CCeEEEeCCchhhh
Confidence 45789999987643 455666777887654 45677775 6777766556655554443 47799999998654
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=69.39 E-value=6.4 Score=32.59 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=33.2
Q ss_pred CeeEEEEeecceEEEEEecc---CCCceEEEEEEecCCCeEEEeeeCCCCcccCcc
Q 037723 207 GIKLCVMENTSTFISCECSD---LMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRT 259 (714)
Q Consensus 207 ~f~ir~~ks~~~r~~~~C~~---~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~~ 259 (714)
|+.|...+....+..-.|+. .+|++++.... +. + .....|||++..
T Consensus 27 Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~----~~--~-~~~~~HnH~p~~ 75 (87)
T 2rpr_A 27 SFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG----HR--I-MVMRSHCHQPDL 75 (87)
T ss_dssp TEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET----TE--E-EECSCCSSCCCH
T ss_pred CEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC----CC--E-ECCCCcCCCCch
Confidence 77777777677778899987 48999988753 22 2 246779998753
No 7
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=67.04 E-value=39 Score=32.99 Aligned_cols=70 Identities=10% Similarity=-0.122 Sum_probs=49.1
Q ss_pred CcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723 377 RRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD 456 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~ 456 (714)
..++.+|.|+.... +|..+.++.+|... .+.+|+.+- .++.+.-.-+|+.+....+ .|.+|.||+.....
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~S-r~i~~~~~~-~~~~~~v~~~l~~~~~~~g-------~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTAS-SAIVVTQHG-RVTSVAVQHHWATAIAVLG-------RPKAIKTDNGSCFT 79 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTT-CCEEEEEES-SCCHHHHHHHHHHHHHHHC-------CCSEEEECSCHHHH
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCC-CCEEEEEcc-CCCHHHHHHHHHHHHHHhC-------CCcEEEECCCCccc
Confidence 35789999987653 34466667777654 456677776 7888777777766655553 47899999988653
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=62.87 E-value=2.9 Score=34.57 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=33.8
Q ss_pred hhhhHhhccchHHHHHHHhhhccccCCCceEEEeecc
Q 037723 35 CFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDT 71 (714)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (714)
++-|-|..|++|++...|++++|.+..+.+++.|.++
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4556788999999999999999999999999999986
No 9
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=51.75 E-value=53 Score=31.93 Aligned_cols=64 Identities=16% Similarity=0.042 Sum_probs=37.6
Q ss_pred cEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723 378 RLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD 456 (714)
Q Consensus 378 ~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~ 456 (714)
.++.+|.|+..++| +++ .+|... .+.+|+.+-. ++.....-++..+.... .+.+|.||+.....
T Consensus 10 ~~w~~D~t~~~g~~---~l~--~vD~~S-r~i~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 10 GIWQLDCTHLEGKV---ILV--AVHVAS-GYIEAEVIPA-ETGQETAYFLLKLAGRW--------PVKTIHTDNGSNFT 73 (239)
T ss_dssp GEEEEEEEEETTEE---EEE--EECTTT-CCEEEECCSS-SSTTHHHHHHHHHHHHS--------CCCEEEECCCHHHH
T ss_pred CEEEEeccccCCeE---EEE--EEECCC-CeEEEEEeCC-CCHHHHHHHHHHHHHhc--------CCcEEEecCcHHHH
Confidence 47899999983332 444 446544 4567775554 44444444443333322 35899999988653
No 10
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=51.28 E-value=75 Score=30.01 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=41.8
Q ss_pred cEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHH
Q 037723 378 RLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGV 455 (714)
Q Consensus 378 ~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl 455 (714)
.++.+|-|+..++ +.++.+|..-. +..++.+-. ++.+...-+|..+....+ .| +|.||+....
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~g-------~~-~i~sDnG~~F 122 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRWP-------IT-HLHTDNGANF 122 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTSC-------CS-EEEECCCTTT
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHcC-------CC-EEEeCCCchh
Confidence 4788998888654 35666777666 667766554 677776666655544442 34 4999998854
No 11
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=50.45 E-value=1e+02 Score=31.50 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCCcceeEEEEEcCCCCEEEEEEEecc---cCCHHHHHHHHHHHHHhccccccC-C--CCcEEEEcCCchHH
Q 037723 390 PYKSVMLVAVFRDANNAILPIAFCEVQ---EENFDSWSFFLKNLYEGLCMDYMD-Y--GKGICIMCDRDNGV 455 (714)
Q Consensus 390 ky~g~Ll~avG~D~n~~~~plAfa~v~---~E~~esw~WfL~~l~~~l~~~~~~-~--~~~~~iisD~~~gl 455 (714)
...+.++.+.+.+..| .+++.+++ .-+.+.|.-||+.+...+...... . +.+++|++|....-
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h 254 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSH 254 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCcc
Confidence 4556777777777777 57777776 568888988888776554211000 0 23679999986643
No 12
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=48.48 E-value=89 Score=27.22 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=44.6
Q ss_pred cEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHHH
Q 037723 378 RLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDE 457 (714)
Q Consensus 378 ~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~~ 457 (714)
.++.+|.|+..+ .+.++.+|...... +++.+- +++.+...-+|..+.... + |.+|.||+......
T Consensus 3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~-------g-p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRY-------T-VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHS-------C-CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHh-------C-CcEEecCCchHhhH
Confidence 478899999843 25666677766554 666654 777777766666554443 3 78999999987644
No 13
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=40.90 E-value=83 Score=28.07 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=44.7
Q ss_pred CcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723 377 RRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD 456 (714)
Q Consensus 377 r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~ 456 (714)
-.++.+|.|+..++ +.++-+|...... +++.+ ..++.+.-.-+|..+....+ +.+|.||+.....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~--------~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP--------VKTVHTDNGSNFT 73 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC--------CCEEEECCCGGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC--------CcEEeecChHhhh
Confidence 35789999998653 4667777766644 66666 45677776666666555443 4689999988643
No 14
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=40.59 E-value=15 Score=30.80 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=28.8
Q ss_pred hhccchHHHHHHHhhhccccCCCceEEEeecc
Q 037723 40 IGQQMRDVLILSMAVDSKNASEQSTRVHISDT 71 (714)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (714)
|..+++-.+.+..||.++|++++.+.+.|-.+
T Consensus 26 vtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k 57 (90)
T 2al3_A 26 VTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRT 57 (90)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCGGGCEEEETTE
T ss_pred ECCCCCHHHHHHHHHHHhCCChhhCeEEeCCE
Confidence 57889999999999999999999999888754
No 15
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.28 E-value=5.5 Score=33.86 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCchhhhHhhccchHHHHHHHhhhccccCCCceEEEeeccccccccccCCcCCCc
Q 037723 31 SPRNCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDALKDVDESDNV 86 (714)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (714)
+-+-|+ .+.+-++|+|..+|+=+.++- ++.+||++.+-+=+|+..+|+|+.
T Consensus 17 GEkRIi--~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~n~EllIpl~sQeDLDka 67 (103)
T 2cu1_A 17 GEKRIL--QFPRPVKLEDLRSKAKIAFGQ---SMDLHYTNNELVIPLTTQDDLDKA 67 (103)
T ss_dssp TEEEEE--EEESSCCHHHHHHHHHHHHSS---CEEEEECSSSSCEECCSHHHHHHH
T ss_pred CeEEEE--eccCCccHHHHHHHHHHHhCC---eeeEEEecceEEEeccCHHHHHHH
Confidence 344565 678999999999999999985 899999999988899999998753
No 16
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=35.07 E-value=80 Score=32.41 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=49.7
Q ss_pred CCcEEEeeceeeccCC---Cc---ceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcE--EE
Q 037723 376 CRRLVIVDGWEIDSPY---KS---VMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGI--CI 447 (714)
Q Consensus 376 ~r~Vi~iD~T~~~~ky---~g---~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~--~i 447 (714)
-..++.+|+|++.... .| .....+-+|.... .++||.+...|+.++-.-.|.......+ .|. +|
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G-------~P~~~~i 86 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG-------IPEDFHI 86 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC-------EESSCEE
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC-------CCCCcEE
Confidence 3458899998765431 23 3556666776655 4589999999998888777766555443 355 99
Q ss_pred EcCCchHH
Q 037723 448 MCDRDNGV 455 (714)
Q Consensus 448 isD~~~gl 455 (714)
.||+.++.
T Consensus 87 ~sDnG~~f 94 (327)
T 1bco_A 87 TIDNTRGA 94 (327)
T ss_dssp ECCCTTST
T ss_pred EeeCchhh
Confidence 99998753
No 17
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=30.66 E-value=1.6e+02 Score=26.90 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=39.6
Q ss_pred CCcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHH
Q 037723 376 CRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGV 455 (714)
Q Consensus 376 ~r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl 455 (714)
-..++.+|.|+..++| +|+ .+|..-... +|+.+- .++.+.-.-++..+....+ +.+|.||+....
T Consensus 28 p~~~w~~D~~~~~g~~---~l~--~vD~~Sr~~-~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~i~sDnG~ef 92 (183)
T 3av9_A 28 SPGIWQLDCTHLEGKV---ILV--AVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRWP--------VKTVHTDNGSNF 92 (183)
T ss_dssp CTTEEEEEEEEETTEE---EEE--EEETTTTEE-EEEEES-SCCHHHHHHHHHHHHHHSC--------CCEEECSSHHHH
T ss_pred CCCEEEEeccccCCcE---EEE--EEECCCCCE-EEEEeC-CccchHHHHHHHHHHHHcC--------CcEEEecCchhc
Confidence 3457899999884433 444 446655544 777654 4555554444444433332 478999998865
Q ss_pred H
Q 037723 456 D 456 (714)
Q Consensus 456 ~ 456 (714)
.
T Consensus 93 ~ 93 (183)
T 3av9_A 93 T 93 (183)
T ss_dssp H
T ss_pred c
Confidence 4
No 18
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=27.79 E-value=40 Score=20.83 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.8
Q ss_pred ccCceeCCHHHHHHHHHHH
Q 037723 184 KLGHKFKDEFQFRTAVDIQ 202 (714)
Q Consensus 184 ~vG~~F~s~ee~r~ai~~y 202 (714)
..|.+|.+..|++++|..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 5799999999999999765
No 19
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=26.08 E-value=1.7e+02 Score=26.85 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=45.2
Q ss_pred cEEEeec-eeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723 378 RLVIVDG-WEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD 456 (714)
Q Consensus 378 ~Vi~iD~-T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~ 456 (714)
.++.+|- +++... +|..+.++.+|..-.. .+++.+ ...+.+...-+|+. .+.. +.|.+|.||+.....
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~---~~~~-----g~p~~i~sDnG~~f~ 82 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNV---LTSI-----AIPRVIHSDQGAAFT 82 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHH---HTTT-----CCCSEEEECSCHHHH
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHH---HHHh-----CCCcEEEecCCccee
Confidence 4788886 444433 5677778888877554 567776 67777665554443 3322 458899999998764
Q ss_pred H
Q 037723 457 E 457 (714)
Q Consensus 457 ~ 457 (714)
.
T Consensus 83 s 83 (200)
T 2x78_A 83 S 83 (200)
T ss_dssp S
T ss_pred h
Confidence 4
No 20
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=25.37 E-value=2.5e+02 Score=26.29 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=43.3
Q ss_pred cEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHHH
Q 037723 378 RLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDE 457 (714)
Q Consensus 378 ~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~~ 457 (714)
.++.+|-|+..++ +.++-+|..-... .++.+ .+++.+...-+|..+.... + |.+|.||+......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~-------g-p~~i~sDnG~~F~s 125 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMF-------A-PKSLQSDNGPAFVA 125 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHH-------C-CCEEEECCCHHHHS
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHh-------C-CcEEEeCCCchhhh
Confidence 5788998876543 5667777776655 66654 5566666555655544443 3 78999999987643
Q ss_pred H
Q 037723 458 A 458 (714)
Q Consensus 458 A 458 (714)
+
T Consensus 126 ~ 126 (219)
T 3hph_A 126 E 126 (219)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=24.27 E-value=56 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=34.2
Q ss_pred HhhccchHHHHHHHhhhccccCCC-ceEEEeec-----cccccccccCCcC
Q 037723 39 AIGQQMRDVLILSMAVDSKNASEQ-STRVHISD-----TEVIDALKDVDES 83 (714)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~ 83 (714)
-|-.++.....+.--|.+.+|+.+ +++|-|.- .-.|++|+-.|+|
T Consensus 25 ~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 25 SIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDED 75 (82)
T ss_dssp EEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred EecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCc
Confidence 566788899999999999999999 99999983 2334454444443
Done!