Query 037727
Match_columns 205
No_of_seqs 204 out of 1064
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1902 NemA NADH:flavin oxido 100.0 5.6E-56 1.2E-60 390.1 19.1 177 20-205 1-182 (363)
2 PLN02411 12-oxophytodienoate r 100.0 1.6E-54 3.4E-59 385.7 19.4 183 21-205 8-198 (391)
3 PF00724 Oxidored_FMN: NADH:fl 100.0 1.5E-53 3.4E-58 373.7 15.3 176 24-205 1-182 (341)
4 cd04734 OYE_like_3_FMN Old yel 100.0 5.1E-52 1.1E-56 364.3 18.9 170 25-205 1-174 (343)
5 PRK13523 NADPH dehydrogenase N 100.0 8.6E-52 1.9E-56 361.8 18.7 169 23-205 1-175 (337)
6 PRK10605 N-ethylmaleimide redu 100.0 1E-51 2.2E-56 364.4 18.9 181 23-205 1-192 (362)
7 cd04733 OYE_like_2_FMN Old yel 100.0 1E-51 2.2E-56 361.8 18.3 173 25-205 1-182 (338)
8 cd02933 OYE_like_FMN Old yello 100.0 4.4E-51 9.6E-56 357.6 19.8 181 24-205 1-185 (338)
9 cd04735 OYE_like_4_FMN Old yel 100.0 2.2E-51 4.8E-56 361.5 18.0 172 25-205 1-177 (353)
10 cd04747 OYE_like_5_FMN Old yel 100.0 3.3E-51 7.2E-56 360.4 19.0 171 25-205 1-177 (361)
11 cd02932 OYE_YqiM_FMN Old yello 100.0 4.3E-51 9.2E-56 357.5 18.6 172 25-205 1-187 (336)
12 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 6E-51 1.3E-55 358.8 18.8 166 25-205 1-170 (353)
13 cd02929 TMADH_HD_FMN Trimethyl 100.0 1.6E-50 3.4E-55 358.0 18.8 176 20-205 3-183 (370)
14 cd02803 OYE_like_FMN_family Ol 100.0 1.1E-50 2.5E-55 352.8 16.4 169 26-205 1-174 (327)
15 cd02931 ER_like_FMN Enoate red 100.0 2.7E-49 5.9E-54 351.4 19.1 172 25-205 1-184 (382)
16 PRK08255 salicylyl-CoA 5-hydro 100.0 8.8E-49 1.9E-53 374.2 18.8 177 20-205 394-584 (765)
17 KOG0134 NADH:flavin oxidoreduc 99.9 1.1E-25 2.4E-30 197.2 2.5 176 23-205 7-207 (400)
18 PRK07259 dihydroorotate dehydr 97.8 0.0002 4.3E-09 61.8 10.8 107 28-192 3-122 (301)
19 cd04740 DHOD_1B_like Dihydroor 97.8 0.00024 5.3E-09 61.1 10.4 106 29-192 2-119 (296)
20 TIGR01037 pyrD_sub1_fam dihydr 97.5 0.00036 7.7E-09 60.2 6.9 85 28-121 2-98 (300)
21 TIGR00737 nifR3_yhdG putative 97.0 0.003 6.6E-08 55.0 7.6 42 31-81 1-43 (319)
22 cd04722 TIM_phosphate_binding 96.2 0.031 6.6E-07 43.7 8.1 56 57-124 12-68 (200)
23 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.069 1.5E-06 45.6 10.1 44 30-82 2-46 (289)
24 PRK10415 tRNA-dihydrouridine s 95.5 0.047 1E-06 47.8 7.1 44 29-81 1-45 (321)
25 cd04739 DHOD_like Dihydroorota 95.3 0.25 5.3E-06 43.3 10.7 45 28-81 3-48 (325)
26 KOG0134 NADH:flavin oxidoreduc 94.8 0.0053 1.1E-07 54.9 -1.1 84 22-105 15-108 (400)
27 COG0042 tRNA-dihydrouridine sy 94.4 0.21 4.5E-06 43.9 7.9 47 28-82 1-48 (323)
28 PRK07565 dihydroorotate dehydr 94.4 0.33 7.2E-06 42.6 9.2 45 28-81 4-49 (334)
29 cd02940 DHPD_FMN Dihydropyrimi 94.0 0.7 1.5E-05 39.9 10.3 45 28-81 3-48 (299)
30 PRK05286 dihydroorotate dehydr 89.7 4.7 0.0001 35.6 10.6 44 28-81 50-94 (344)
31 cd02801 DUS_like_FMN Dihydrour 88.9 0.35 7.5E-06 39.6 2.7 22 174-195 66-90 (231)
32 PRK02506 dihydroorotate dehydr 87.0 7.4 0.00016 33.8 10.0 46 28-82 3-49 (310)
33 cd04741 DHOD_1A_like Dihydroor 86.9 3.7 8.1E-05 35.4 8.0 83 30-122 2-100 (294)
34 PRK08318 dihydropyrimidine deh 84.3 14 0.0003 33.4 10.7 43 28-79 5-48 (420)
35 PRK03170 dihydrodipicolinate s 81.5 15 0.00033 31.3 9.4 73 41-123 5-80 (292)
36 cd00951 KDGDH 5-dehydro-4-deox 78.8 19 0.00041 30.8 9.1 27 99-125 20-46 (289)
37 cd00954 NAL N-Acetylneuraminic 78.5 20 0.00044 30.6 9.2 73 42-124 5-81 (288)
38 TIGR02313 HpaI-NOT-DapA 2,4-di 77.8 22 0.00047 30.6 9.2 72 41-122 4-78 (294)
39 cd00408 DHDPS-like Dihydrodipi 77.3 20 0.00044 30.2 8.8 70 43-122 3-75 (281)
40 PRK11815 tRNA-dihydrouridine s 77.0 1.9 4.2E-05 37.9 2.5 18 175-192 77-94 (333)
41 TIGR00674 dapA dihydrodipicoli 76.6 26 0.00056 29.9 9.3 71 42-122 3-76 (285)
42 cd00950 DHDPS Dihydrodipicolin 76.0 25 0.00053 29.8 9.0 69 43-121 6-77 (284)
43 PF01180 DHO_dh: Dihydroorotat 75.9 11 0.00024 32.2 6.9 44 29-82 4-48 (295)
44 cd00003 PNPsynthase Pyridoxine 75.8 19 0.00042 30.2 7.9 124 51-197 67-191 (234)
45 cd04736 MDH_FMN Mandelate dehy 74.1 4.1 8.8E-05 36.4 3.8 35 163-197 221-268 (361)
46 TIGR00559 pdxJ pyridoxine 5'-p 73.0 26 0.00057 29.5 8.1 124 51-197 67-191 (237)
47 cd00958 DhnA Class I fructose- 73.0 15 0.00032 30.2 6.7 26 95-120 104-129 (235)
48 cd04738 DHOD_2_like Dihydrooro 72.4 19 0.00042 31.4 7.6 44 28-81 40-84 (327)
49 PRK10550 tRNA-dihydrouridine s 72.0 3.4 7.3E-05 36.1 2.7 18 175-192 75-92 (312)
50 PRK04147 N-acetylneuraminate l 71.8 32 0.0007 29.4 8.8 74 41-124 7-84 (293)
51 cd02809 alpha_hydroxyacid_oxid 71.3 66 0.0014 27.6 10.8 21 27-47 54-74 (299)
52 PLN02495 oxidoreductase, actin 71.2 61 0.0013 29.3 10.6 45 28-81 12-57 (385)
53 PF00701 DHDPS: Dihydrodipicol 70.7 26 0.00057 29.7 7.9 71 43-123 7-80 (289)
54 PLN02417 dihydrodipicolinate s 70.4 47 0.001 28.3 9.4 76 38-123 2-80 (280)
55 COG2355 Zn-dependent dipeptida 70.2 5.7 0.00012 34.8 3.7 65 100-175 149-213 (313)
56 PRK03620 5-dehydro-4-deoxygluc 69.3 48 0.001 28.6 9.3 70 42-121 12-84 (303)
57 cd00952 CHBPH_aldolase Trans-o 67.7 49 0.0011 28.7 9.1 63 52-124 23-88 (309)
58 TIGR00683 nanA N-acetylneurami 67.5 61 0.0013 27.7 9.6 73 42-124 5-81 (290)
59 COG1830 FbaB DhnA-type fructos 67.3 17 0.00036 31.2 5.8 59 95-192 125-183 (265)
60 cd00953 KDG_aldolase KDG (2-ke 67.2 28 0.00061 29.6 7.4 27 98-124 18-44 (279)
61 cd07381 MPP_CapA CapA and rela 66.1 47 0.001 27.3 8.4 28 97-125 159-186 (239)
62 PF01085 HH_signal: Hedgehog a 63.6 5.8 0.00012 31.2 2.2 20 173-192 130-149 (160)
63 TIGR03249 KdgD 5-dehydro-4-deo 62.9 69 0.0015 27.4 9.0 26 99-124 25-50 (296)
64 TIGR01304 IMP_DH_rel_2 IMP deh 62.1 11 0.00025 33.7 4.1 33 6-47 22-54 (369)
65 COG0854 PdxJ Pyridoxal phospha 62.0 42 0.0009 28.2 7.0 127 51-197 68-195 (243)
66 cd03316 MR_like Mandelate race 61.5 7.4 0.00016 34.1 2.8 26 173-198 139-167 (357)
67 PF03740 PdxJ: Pyridoxal phosp 59.3 32 0.0007 29.0 6.1 122 52-197 69-194 (239)
68 PF13702 Lysozyme_like: Lysozy 56.5 43 0.00093 26.5 6.0 79 98-198 4-100 (160)
69 TIGR01036 pyrD_sub2 dihydrooro 55.5 80 0.0017 27.8 8.3 44 28-81 47-91 (335)
70 PRK05402 glycogen branching en 55.0 74 0.0016 31.1 8.7 28 99-126 314-343 (726)
71 cd02922 FCB2_FMN Flavocytochro 54.9 16 0.00035 32.4 3.8 161 31-196 58-244 (344)
72 TIGR02708 L_lactate_ox L-lacta 54.2 15 0.00033 32.9 3.6 34 163-196 213-259 (367)
73 PRK05265 pyridoxine 5'-phospha 54.1 87 0.0019 26.4 7.8 123 51-197 70-193 (239)
74 PRK11197 lldD L-lactate dehydr 52.3 17 0.00038 32.7 3.6 33 164-196 231-276 (381)
75 PF00128 Alpha-amylase: Alpha 51.2 20 0.00043 29.7 3.7 29 99-127 51-81 (316)
76 cd07410 MPP_CpdB_N Escherichia 50.3 66 0.0014 27.0 6.8 29 98-126 168-196 (277)
77 cd03452 MaoC_C MaoC_C The C-t 50.2 9 0.00019 29.1 1.3 43 162-204 15-63 (142)
78 PF07488 Glyco_hydro_67M: Glyc 49.8 49 0.0011 29.1 5.8 59 56-123 56-115 (328)
79 cd02911 arch_FMN Archeal FMN-b 49.0 28 0.00061 29.0 4.2 74 39-122 1-81 (233)
80 cd03332 LMO_FMN L-Lactate 2-mo 48.8 21 0.00046 32.2 3.6 34 163-196 238-284 (383)
81 PLN02535 glycolate oxidase 48.4 22 0.00048 31.8 3.6 34 163-196 208-254 (364)
82 smart00854 PGA_cap Bacterial c 47.4 1.2E+02 0.0026 24.9 7.7 27 98-125 158-184 (239)
83 PRK09250 fructose-bisphosphate 47.4 39 0.00085 30.1 5.0 19 174-192 216-234 (348)
84 PF08838 DUF1811: Protein of u 47.3 31 0.00068 25.2 3.6 37 164-200 6-51 (102)
85 PRK08227 autoinducer 2 aldolas 46.8 56 0.0012 27.9 5.7 23 96-118 123-145 (264)
86 TIGR00742 yjbN tRNA dihydrouri 45.4 18 0.00038 31.7 2.5 18 175-192 67-84 (318)
87 PF09587 PGA_cap: Bacterial ca 45.3 79 0.0017 26.2 6.4 27 98-125 169-195 (250)
88 COG0434 SgcQ Predicted TIM-bar 44.6 25 0.00055 29.8 3.2 24 169-192 28-51 (263)
89 TIGR01949 AroFGH_arch predicte 43.8 86 0.0019 26.2 6.4 23 96-118 119-141 (258)
90 COG0403 GcvP Glycine cleavage 43.2 98 0.0021 28.5 6.9 69 37-118 164-245 (450)
91 PRK07226 fructose-bisphosphate 42.7 1E+02 0.0022 26.1 6.7 24 95-118 121-144 (267)
92 PRK06852 aldolase; Validated 42.4 76 0.0016 27.8 5.9 23 96-118 150-172 (304)
93 PLN02979 glycolate oxidase 42.2 27 0.00059 31.3 3.2 34 163-196 208-254 (366)
94 PLN02784 alpha-amylase 42.2 2.5E+02 0.0054 28.4 9.9 26 99-124 567-594 (894)
95 smart00642 Aamy Alpha-amylase 41.9 31 0.00068 27.0 3.2 27 99-125 69-97 (166)
96 cd04737 LOX_like_FMN L-Lactate 40.9 29 0.00063 30.9 3.2 33 164-196 207-252 (351)
97 PF01116 F_bP_aldolase: Fructo 39.4 39 0.00085 29.2 3.7 31 95-125 109-139 (287)
98 PF13986 DUF4224: Domain of un 38.7 40 0.00086 20.9 2.7 34 164-197 2-38 (47)
99 PF02426 MIase: Muconolactone 37.6 66 0.0014 22.9 4.0 30 160-189 10-39 (91)
100 cd01301 rDP_like renal dipepti 37.5 24 0.00053 30.7 2.2 64 100-174 154-217 (309)
101 TIGR00167 cbbA ketose-bisphosp 37.3 1.4E+02 0.0031 25.7 6.8 26 99-124 28-53 (288)
102 COG0329 DapA Dihydrodipicolina 36.5 1.6E+02 0.0035 25.4 7.1 59 98-192 23-103 (299)
103 COG1312 UxuA D-mannonate dehyd 36.1 1.2E+02 0.0026 27.1 6.1 61 54-118 40-101 (362)
104 TIGR02402 trehalose_TreZ malto 36.1 43 0.00094 31.5 3.7 28 99-126 159-188 (542)
105 KOG1503 Phosphoribosylpyrophos 35.4 46 0.001 28.4 3.4 35 164-198 250-287 (354)
106 cd03450 NodN NodN (nodulation 35.1 22 0.00048 27.4 1.4 40 162-202 21-67 (149)
107 cd03465 URO-D_like The URO-D _ 34.5 1E+02 0.0022 26.4 5.5 60 56-120 167-228 (330)
108 PF01208 URO-D: Uroporphyrinog 33.4 55 0.0012 28.3 3.7 62 56-126 181-245 (343)
109 TIGR00695 uxuA mannonate dehyd 33.3 1.9E+02 0.0041 26.3 7.1 59 57-119 43-102 (394)
110 cd03451 FkbR2 FkbR2 is a Strep 33.2 27 0.00059 26.1 1.6 41 162-202 18-64 (146)
111 cd00347 Flavin_utilizing_monox 32.4 49 0.0011 21.4 2.6 23 170-192 17-39 (90)
112 PF03786 UxuA: D-mannonate deh 32.1 1E+02 0.0022 27.5 5.2 59 56-118 44-103 (351)
113 TIGR01858 tag_bisphos_ald clas 32.1 1E+02 0.0022 26.6 5.0 30 95-124 108-137 (282)
114 PF01244 Peptidase_M19: Membra 31.7 17 0.00036 31.9 0.2 66 99-175 159-224 (320)
115 cd07939 DRE_TIM_NifV Streptomy 31.3 80 0.0017 26.4 4.3 86 95-192 105-211 (259)
116 PF10309 DUF2414: Protein of u 30.7 1E+02 0.0022 20.4 3.8 16 162-177 13-28 (62)
117 TIGR01463 mtaA_cmuA methyltran 30.7 1.3E+02 0.0029 26.0 5.7 58 56-118 179-238 (340)
118 PRK15447 putative protease; Pr 30.7 1.2E+02 0.0027 26.1 5.4 54 54-118 12-66 (301)
119 PLN02493 probable peroxisomal 30.3 37 0.0008 30.5 2.1 34 163-196 209-255 (367)
120 KOG4654 Uncharacterized conser 30.3 33 0.00071 28.1 1.6 29 164-192 192-220 (252)
121 PRK13693 (3R)-hydroxyacyl-ACP 30.3 39 0.00085 25.7 2.0 42 162-203 19-66 (142)
122 cd03453 SAV4209_like SAV4209_l 29.8 47 0.001 24.4 2.3 41 162-202 9-55 (127)
123 PRK00199 ihfB integration host 29.6 91 0.002 21.8 3.7 29 164-192 16-44 (94)
124 PRK12313 glycogen branching en 29.3 61 0.0013 31.0 3.6 28 99-126 219-248 (633)
125 cd00951 KDGDH 5-dehydro-4-deox 29.2 2.4E+02 0.0051 24.0 6.9 71 42-122 5-78 (289)
126 PRK09197 fructose-bisphosphate 28.9 1.3E+02 0.0028 26.9 5.3 80 99-195 31-138 (350)
127 PRK11702 hypothetical protein; 28.9 59 0.0013 24.0 2.6 30 162-191 30-59 (108)
128 cd03131 GATase1_HTS Type 1 glu 28.5 77 0.0017 25.3 3.5 53 54-115 43-100 (175)
129 PF00232 Glyco_hydro_1: Glycos 27.6 74 0.0016 29.1 3.7 33 92-124 91-123 (455)
130 PF00834 Ribul_P_3_epim: Ribul 27.6 1.3E+02 0.0027 24.6 4.7 87 101-200 93-199 (201)
131 PF00150 Cellulase: Cellulase 27.5 87 0.0019 25.6 3.9 31 93-123 55-85 (281)
132 cd00945 Aldolase_Class_I Class 27.5 51 0.0011 25.5 2.3 19 174-192 64-82 (201)
133 PLN02433 uroporphyrinogen deca 27.5 1.2E+02 0.0026 26.5 4.9 36 71-119 309-344 (345)
134 COG1659 Uncharacterized protei 27.4 53 0.0011 27.5 2.4 32 169-200 146-194 (267)
135 PF11590 DNAPolymera_Pol: DNA 27.4 53 0.0012 19.8 1.8 18 179-196 2-20 (41)
136 PF11419 DUF3194: Protein of u 27.2 74 0.0016 22.6 2.8 22 163-184 4-25 (87)
137 PF01070 FMN_dh: FMN-dependent 27.2 47 0.001 29.6 2.3 34 163-196 210-256 (356)
138 PRK11572 copper homeostasis pr 27.1 72 0.0016 27.1 3.2 24 165-192 67-90 (248)
139 TIGR00167 cbbA ketose-bisphosp 26.8 2.6E+02 0.0057 24.1 6.7 31 95-125 113-143 (288)
140 PRK15452 putative protease; Pr 26.8 1.9E+02 0.0041 26.6 6.2 19 100-118 46-64 (443)
141 COG0274 DeoC Deoxyribose-phosp 26.5 67 0.0015 26.9 2.9 22 164-192 136-157 (228)
142 cd03446 MaoC_like MoaC_like 26.4 32 0.00069 25.5 0.9 39 162-200 15-59 (140)
143 PRK09441 cytoplasmic alpha-amy 26.4 66 0.0014 29.6 3.1 27 99-125 80-108 (479)
144 PF04320 DUF469: Protein with 26.3 68 0.0015 23.4 2.6 29 162-191 24-52 (101)
145 PRK00694 4-hydroxy-3-methylbut 26.2 6E+02 0.013 24.5 10.6 151 26-204 15-176 (606)
146 COG0167 PyrD Dihydroorotate de 26.1 1.4E+02 0.003 26.2 4.9 57 29-94 4-62 (310)
147 PF14871 GHL6: Hypothetical gl 26.1 2.8E+02 0.0061 20.9 6.1 33 87-123 35-67 (132)
148 cd03308 CmuA_CmuC_like CmuA_Cm 25.7 1.4E+02 0.0031 26.5 5.1 60 55-118 212-273 (378)
149 cd03309 CmuC_like CmuC_like. P 25.4 1.5E+02 0.0034 25.8 5.2 56 56-114 154-212 (321)
150 cd03449 R_hydratase (R)-hydrat 25.4 27 0.0006 25.1 0.4 41 162-202 10-56 (128)
151 COG0167 PyrD Dihydroorotate de 25.3 61 0.0013 28.4 2.6 19 174-192 172-190 (310)
152 PRK02048 4-hydroxy-3-methylbut 25.1 6.3E+02 0.014 24.4 11.0 150 27-204 12-172 (611)
153 TIGR02104 pulA_typeI pullulana 25.0 70 0.0015 30.5 3.1 26 99-124 228-255 (605)
154 PF04179 Init_tRNA_PT: Initiat 24.8 2.7E+02 0.006 25.7 6.8 43 61-110 76-118 (451)
155 PLN02826 dihydroorotate dehydr 24.4 1.4E+02 0.003 27.2 4.8 51 28-88 75-127 (409)
156 PRK08195 4-hyroxy-2-oxovalerat 24.4 96 0.0021 27.3 3.7 82 99-192 114-218 (337)
157 PF13653 GDPD_2: Glycerophosph 24.2 63 0.0014 18.1 1.6 13 180-192 12-24 (30)
158 COG3661 AguA Alpha-glucuronida 23.9 2.4E+02 0.0052 26.4 6.1 62 56-123 182-244 (684)
159 TIGR01305 GMP_reduct_1 guanosi 23.8 82 0.0018 28.0 3.1 26 167-192 138-175 (343)
160 COG3854 SpoIIIAA ncharacterize 23.8 66 0.0014 27.6 2.4 40 162-203 219-259 (308)
161 PRK07475 hypothetical protein; 23.7 67 0.0015 26.8 2.5 21 172-192 62-82 (245)
162 PLN02849 beta-glucosidase 23.6 1.3E+02 0.0029 28.1 4.6 30 94-123 113-142 (503)
163 TIGR01233 lacG 6-phospho-beta- 23.6 1.4E+02 0.003 27.6 4.7 31 94-124 87-117 (467)
164 PRK06806 fructose-bisphosphate 23.5 1E+02 0.0022 26.5 3.6 31 94-124 109-139 (281)
165 cd07409 MPP_CD73_N CD73 ecto-5 23.4 1.5E+02 0.0032 25.1 4.6 29 97-125 166-194 (281)
166 PRK00507 deoxyribose-phosphate 23.1 91 0.002 25.8 3.1 28 163-197 131-159 (221)
167 PRK13511 6-phospho-beta-galact 23.1 1.4E+02 0.003 27.6 4.6 31 94-124 88-118 (469)
168 TIGR00608 radc DNA repair prot 23.0 4.2E+02 0.0091 21.8 7.0 79 29-117 119-199 (218)
169 PLN02814 beta-glucosidase 22.8 1.3E+02 0.0028 28.2 4.3 30 94-123 111-140 (504)
170 PF09424 YqeY: Yqey-like prote 22.8 72 0.0016 24.6 2.3 22 160-181 86-107 (143)
171 cd06542 GH18_EndoS-like Endo-b 22.6 4.1E+02 0.009 21.7 7.1 23 99-121 50-72 (255)
172 PRK10664 transcriptional regul 22.3 1.5E+02 0.0033 20.7 3.7 27 163-189 14-40 (90)
173 PF11051 Mannosyl_trans3: Mann 22.3 95 0.0021 26.3 3.2 28 98-125 12-39 (271)
174 PRK03906 mannonate dehydratase 22.1 3.9E+02 0.0084 24.2 7.1 60 55-118 41-101 (385)
175 PRK05368 homoserine O-succinyl 22.1 1.7E+02 0.0036 25.6 4.7 54 53-115 79-137 (302)
176 cd01095 Nitrilotriacetate_mono 22.1 76 0.0016 28.2 2.6 19 174-192 29-47 (358)
177 TIGR02127 pyrF_sub2 orotidine 22.0 3.6E+02 0.0077 22.9 6.6 29 168-198 96-124 (261)
178 COG4992 ArgD Ornithine/acetylo 21.8 64 0.0014 29.4 2.0 27 160-186 375-401 (404)
179 COG3589 Uncharacterized conser 21.8 3.5E+02 0.0076 24.2 6.5 59 52-121 11-70 (360)
180 PLN02960 alpha-amylase 21.7 96 0.0021 31.2 3.4 28 99-126 465-494 (897)
181 PF00216 Bac_DNA_binding: Bact 21.7 1.6E+02 0.0034 20.0 3.7 28 165-192 16-43 (90)
182 TIGR03249 KdgD 5-dehydro-4-deo 21.3 3.7E+02 0.008 22.9 6.7 69 43-121 11-82 (296)
183 PRK00285 ihfA integration host 21.3 1.7E+02 0.0037 20.6 3.9 34 164-197 17-51 (99)
184 PF14848 HU-DNA_bdg: DNA-bindi 21.2 1.5E+02 0.0033 22.0 3.7 29 164-192 44-72 (124)
185 cd00959 DeoC 2-deoxyribose-5-p 21.0 89 0.0019 25.2 2.6 22 176-197 132-154 (203)
186 cd03311 CIMS_C_terminal_like C 20.7 1.4E+02 0.003 25.8 4.0 30 163-192 24-54 (332)
187 TIGR03221 muco_delta muconolac 20.7 2E+02 0.0042 20.6 3.9 29 160-188 9-37 (90)
188 PRK03705 glycogen debranching 20.6 97 0.0021 30.0 3.1 28 98-125 240-269 (658)
189 PRK12737 gatY tagatose-bisphos 20.4 1.4E+02 0.003 25.8 3.8 31 95-125 110-140 (284)
190 smart00685 DM14 Repeats in fly 20.3 1.6E+02 0.0034 19.3 3.2 20 169-188 3-22 (59)
191 TIGR02660 nifV_homocitr homoci 20.3 1.5E+02 0.0032 26.3 4.1 86 95-192 108-214 (365)
192 PRK10753 transcriptional regul 20.3 1.8E+02 0.0038 20.3 3.7 27 164-190 15-41 (90)
193 PLN02998 beta-glucosidase 20.2 1.5E+02 0.0034 27.6 4.3 30 94-123 116-145 (497)
No 1
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=5.6e-56 Score=390.09 Aligned_cols=177 Identities=34% Similarity=0.569 Sum_probs=160.3
Q ss_pred CCCcCCCCcceeCCeecCCceEeCCCCCCcc-CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHH
Q 037727 20 NNIIPLLTPYKMGSFNLSHRIVLAPLSRMRS-YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKE 97 (205)
Q Consensus 20 ~~~~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~-~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~ 97 (205)
+.+++||+|++||+++|||||||+||+++++ .+|.||+.+++||++||+|| ||||+|.+.|++.|+.+++++++|+|+
T Consensus 1 ~~~~~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~ 80 (363)
T COG1902 1 MSMPKLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDA 80 (363)
T ss_pred CCccccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChh
Confidence 3567899999999999999999999999987 48889999999999999999 999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDF 177 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 177 (205)
++++||+++++||++|+++++||+|+||++..... ....+++||..+... .....||+||++||+++|++|
T Consensus 81 ~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~-~~~~~vapS~~~~~~--------~~~~~pr~mt~~eI~~ii~~f 151 (363)
T COG1902 81 QIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHP-WLPSAVAPSAIPAPG--------GRRATPRELTEEEIEEVIEDF 151 (363)
T ss_pred HhHHHHHHHHHHHhcCCeEEEEeccCccccccccc-CCCcccCCCcccccc--------CCCCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999998765431 114578888776542 123679999999999999999
Q ss_pred HHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 178 RIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 178 ~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
++||+||++|||||| +||||||+|||||
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp 182 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSP 182 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCC
Confidence 999999999999999 9999999999998
No 2
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=1.6e-54 Score=385.66 Aligned_cols=183 Identities=48% Similarity=0.852 Sum_probs=158.8
Q ss_pred CCcCCCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCCCCCccCCHHHHH
Q 037727 21 NIIPLLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYKHTPGIWTKEQVE 100 (205)
Q Consensus 21 ~~~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~~~~~l~~d~~i~ 100 (205)
.+++||+|++||+++|||||||+||+++++.+|.||+++++||++||+||||||+|+++|++.+..+++++++|+|++++
T Consensus 8 ~~~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~ 87 (391)
T PLN02411 8 SNETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVE 87 (391)
T ss_pred CchhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHH
Confidence 45789999999999999999999999988878999999999999999988999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHHHHH
Q 037727 101 AWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQ-----PNGGFNAAEFTPPRRLRTGEIPQIVN 175 (205)
Q Consensus 101 ~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~-----~~~~~~~~~~~~~~~mt~~eI~~ii~ 175 (205)
+||+|+++||++|+++++||+|+||++...+...+..+++||..+.... +.+. ......|++||++||++||+
T Consensus 88 ~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~pr~mt~~eI~~ii~ 165 (391)
T PLN02411 88 AWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGS--YGKYPKPRALETSEIPEVVE 165 (391)
T ss_pred HHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCcc--ccCCCCCccCCHHHHHHHHH
Confidence 9999999999999999999999999987643222445677776542210 0000 01124689999999999999
Q ss_pred HHHHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 176 DFRIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 176 ~f~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
+|++||+||++|||||| +||||||+|||||
T Consensus 166 ~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp 198 (391)
T PLN02411 166 HYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKD 198 (391)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCC
Confidence 99999999999999999 9999999999998
No 3
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=1.5e-53 Score=373.65 Aligned_cols=176 Identities=37% Similarity=0.622 Sum_probs=142.6
Q ss_pred CCCCcceeCCeecCCceEeCCCCCCcc-CCC-CCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHH
Q 037727 24 PLLTPYKMGSFNLSHRIVLAPLSRMRS-YDY-IPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVE 100 (205)
Q Consensus 24 ~Lf~Pi~ig~~~lkNRiv~aPm~~~~~-~~g-~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~ 100 (205)
+||+|++||+++|||||||+||+++++ .+| .+++.+++||++||+|| ||||+|+++|++.+..+++++++++|++++
T Consensus 1 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~ 80 (341)
T PF00724_consen 1 KLFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIP 80 (341)
T ss_dssp GGGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHH
T ss_pred CCCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHH
Confidence 599999999999999999999999876 466 66779999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 037727 101 AWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIA 180 (205)
Q Consensus 101 ~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~A 180 (205)
+||+|+++||++|+++++||+|+||++.+... +..+++||+......+. ......+++||.+||++||++|++|
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~--~~~~~~psa~~~~~~~~----~~~~~~~~~mt~~eI~~ii~~f~~A 154 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGRQANPEYS--GDPPVGPSAPSALPSPI----KFMGYPPREMTEEEIEEIIEDFAQA 154 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GGGSSGCCS--GGGCEESSCSSSSSTTT----TETSCEEEE--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccceeeccccccccCcccC--CCCccCcccccccCccc----ccCCCCCeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986642 22335677433221100 0012346999999999999999999
Q ss_pred HHHHHHccccee---eccchhhhhhcCC
Q 037727 181 ARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 181 A~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
|+||++|||||| +||||||+|||||
T Consensus 155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp 182 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHGYLLSQFLSP 182 (341)
T ss_dssp HHHHHHTT-SEEEEEESTTSHHHHHHST
T ss_pred HHHHHHhccCeEeecccchhhhhheeee
Confidence 999999999999 9999999999998
No 4
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=5.1e-52 Score=364.27 Aligned_cols=170 Identities=24% Similarity=0.355 Sum_probs=156.0
Q ss_pred CCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHH
Q 037727 25 LLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 25 Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~ 103 (205)
||+|++||+++|||||||+||+++++.+|.||+++++||++||+|| ||||+|+++|++.++.+++++++|+|+++++||
T Consensus 1 Lf~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 1 LLSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CCCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 8999999999999999999999887788999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 037727 104 PIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARN 183 (205)
Q Consensus 104 ~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~r 183 (205)
+|+++||++|+++++||+|+||++.... .+.++++||+++... ....|++||++||++++++|++||+|
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~---------~~~~~~~mt~~eI~~ii~~f~~AA~r 149 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPR---------HRAVPKAMEEEDIEEIIAAFADAARR 149 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCccc--CCCcccCCCCCCCCC---------CCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886432 244578888765432 23568999999999999999999999
Q ss_pred HHHccccee---eccchhhhhhcCC
Q 037727 184 AIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 184 a~~AGfDgV---~ahGyLl~qFlSp 205 (205)
|++|||||| +||||||+|||||
T Consensus 150 a~~aGfDgVeih~ahGyLl~qFlsp 174 (343)
T cd04734 150 CQAGGLDGVELQAAHGHLIDQFLSP 174 (343)
T ss_pred HHHcCCCEEEEccccchHHHHhhCC
Confidence 999999999 9999999999998
No 5
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=8.6e-52 Score=361.77 Aligned_cols=169 Identities=28% Similarity=0.414 Sum_probs=154.1
Q ss_pred cCCCCcceeCCeecCCceEeCCCCCCcc--CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHH
Q 037727 23 IPLLTPYKMGSFNLSHRIVLAPLSRMRS--YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQV 99 (205)
Q Consensus 23 ~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~--~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i 99 (205)
++||+|++||+++|||||+|+||+++.+ .+|.+++++++||++||+|| ||||+|+++|++.+..+++++++++|+++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i 80 (337)
T PRK13523 1 SKLFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHI 80 (337)
T ss_pred CCCCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHH
Confidence 4699999999999999999999987765 48999999999999999999 99999999999999988999999999999
Q ss_pred HhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 037727 100 EAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRI 179 (205)
Q Consensus 100 ~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~ 179 (205)
++||+++|+||++|+++++||+|+||.+... + .+++||+++... ....|++||++||++||++|++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~----~-~~~~ps~~~~~~---------~~~~p~~mt~eeI~~ii~~f~~ 146 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRKAELE----G-DIVAPSAIPFDE---------KSKTPVEMTKEQIKETVLAFKQ 146 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCCCC----C-CccCCCCCCCCC---------CCCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999986422 2 358888876532 1256899999999999999999
Q ss_pred HHHHHHHccccee---eccchhhhhhcCC
Q 037727 180 AARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 180 AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
||+||++|||||| +||||||+|||||
T Consensus 147 aA~~a~~aGfDgVeih~ahGyLl~qFlSp 175 (337)
T PRK13523 147 AAVRAKEAGFDVIEIHGAHGYLINEFLSP 175 (337)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhcCC
Confidence 9999999999999 9999999999998
No 6
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=1e-51 Score=364.42 Aligned_cols=181 Identities=41% Similarity=0.645 Sum_probs=155.0
Q ss_pred cCCCCcceeCCeecCCceEeCCCCCCcc--CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHH
Q 037727 23 IPLLTPYKMGSFNLSHRIVLAPLSRMRS--YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQV 99 (205)
Q Consensus 23 ~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~--~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i 99 (205)
++||+|++||+++|||||||+||++..+ .+|.||+++++||++|| | ||||+|+++|++.++.+++++++|+|+++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA--g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i 78 (362)
T PRK10605 1 EKLFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA--SAGLIISEATQISAQAKGYAGAPGLHSPEQI 78 (362)
T ss_pred CCCCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh--CCCEEEECceeeCcccccCCCCCcccCHHHH
Confidence 3699999999999999999999987543 57799999999999999 6 99999999999999988999999999999
Q ss_pred HhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCC-CCCCC----CCCCCCCCCCHHHHHHHH
Q 037727 100 EAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPN-GGFNA----AEFTPPRRLRTGEIPQIV 174 (205)
Q Consensus 100 ~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~-~~~~~----~~~~~~~~mt~~eI~~ii 174 (205)
++||+++|+||++|+++++||+|+||++.......+..+++||+++...... ....+ .....|++||++||++||
T Consensus 79 ~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii 158 (362)
T PRK10605 79 AAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIV 158 (362)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHH
Confidence 9999999999999999999999999998765322344578999876531000 00000 123568999999999999
Q ss_pred HHHHHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 175 NDFRIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 175 ~~f~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
++|++||+||++|||||| +||||||+|||||
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp 192 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSP 192 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCC
Confidence 999999999999999999 9999999999998
No 7
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1e-51 Score=361.76 Aligned_cols=173 Identities=25% Similarity=0.334 Sum_probs=155.0
Q ss_pred CCCcceeCC-eecCCceEeCCCCCCcc-CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCC---CCCccCCHHH
Q 037727 25 LLTPYKMGS-FNLSHRIVLAPLSRMRS-YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYK---HTPGIWTKEQ 98 (205)
Q Consensus 25 Lf~Pi~ig~-~~lkNRiv~aPm~~~~~-~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~---~~~~l~~d~~ 98 (205)
||+|++||+ ++|||||+|+||+++++ .+|.||+++++||++||+|| ||||+|+++|++.++.++ +++++|+|++
T Consensus 1 Lf~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~ 80 (338)
T cd04733 1 LGQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGED 80 (338)
T ss_pred CCCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHH
Confidence 899999995 99999999999998876 78999999999999999999 999999999999998888 8999999999
Q ss_pred HHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFR 178 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 178 (205)
+++||+|+|+||++|+++++||+|+||++.... +..+++||+++....+. .....|++||++||++++++|+
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~---~~~~~~ps~~~~~~~~~-----~~~~~p~~mt~~eI~~~i~~~~ 152 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLNHPGRQSPAGL---NQNPVAPSVALDPGGLG-----KLFGKPRAMTEEEIEDVIDRFA 152 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCcCCCccC---CCCCcCCCCCcCccccc-----ccCCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999876542 23467888766542110 1234689999999999999999
Q ss_pred HHHHHHHHccccee---eccchhhhhhcCC
Q 037727 179 IAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 179 ~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
+||+||++|||||| +||||||+|||||
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp 182 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSP 182 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCC
Confidence 99999999999999 9999999999998
No 8
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=4.4e-51 Score=357.57 Aligned_cols=181 Identities=42% Similarity=0.698 Sum_probs=156.6
Q ss_pred CCCCcceeCCeecCCceEeCCCCCCcc-CCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCCCCCccCCHHHHHhH
Q 037727 24 PLLTPYKMGSFNLSHRIVLAPLSRMRS-YDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYKHTPGIWTKEQVEAW 102 (205)
Q Consensus 24 ~Lf~Pi~ig~~~lkNRiv~aPm~~~~~-~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l 102 (205)
+||+|++||+++|||||||+||+++.+ .+|.||+++++||++||+| ||||+|+++|++.|+..++++++|+|+++++|
T Consensus 1 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~l 79 (338)
T cd02933 1 KLFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGW 79 (338)
T ss_pred CCCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHH
Confidence 599999999999999999999988876 5899999999999999999 99999999999999989999999999999999
Q ss_pred HHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 037727 103 KPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAAR 182 (205)
Q Consensus 103 ~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ 182 (205)
|+++|+||++|+++++||+|+|+++.......+..+++||..+................|++||++||+++|++|++||+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987643212345788988664321000000012346899999999999999999999
Q ss_pred HHHHccccee---eccchhhhhhcCC
Q 037727 183 NAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 183 ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
||++|||||| +||||||+|||||
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp 185 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRD 185 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCC
Confidence 9999999999 9999999999998
No 9
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.2e-51 Score=361.51 Aligned_cols=172 Identities=27% Similarity=0.416 Sum_probs=155.6
Q ss_pred CCCcceeCC-eecCCceEeCCCCCCcc-CCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCCCCCccCCHHHHHhH
Q 037727 25 LLTPYKMGS-FNLSHRIVLAPLSRMRS-YDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYKHTPGIWTKEQVEAW 102 (205)
Q Consensus 25 Lf~Pi~ig~-~~lkNRiv~aPm~~~~~-~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l 102 (205)
||+|++||+ ++|||||||+||+++++ .+|.||+++++||++||+|.||||+|+++|++.++.+++++++|+|+++++|
T Consensus 1 Lf~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~ 80 (353)
T cd04735 1 LFEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGL 80 (353)
T ss_pred CCCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHH
Confidence 899999998 99999999999998887 6899999999999999996699999999999999888899999999999999
Q ss_pred HHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 037727 103 KPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAAR 182 (205)
Q Consensus 103 ~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ 182 (205)
|+++|+||++|+++++||+|+||++..... .+..+++||+++... .....|++||++||++||++|++||+
T Consensus 81 ~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~-~~~~~~~ps~~~~~~--------~~~~~p~~mt~~eI~~ii~~f~~aA~ 151 (353)
T cd04735 81 RKLAQAIKSKGAKAILQIFHAGRMANPALV-PGGDVVSPSAIAAFR--------PGAHTPRELTHEEIEDIIDAFGEATR 151 (353)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCcccc-CCCceecCCCCcccC--------CCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876532 234578898865321 12356899999999999999999999
Q ss_pred HHHHccccee---eccchhhhhhcCC
Q 037727 183 NAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 183 ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
||++|||||| +||||||+|||||
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp 177 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSP 177 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCC
Confidence 9999999999 9999999999998
No 10
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=3.3e-51 Score=360.44 Aligned_cols=171 Identities=26% Similarity=0.416 Sum_probs=151.8
Q ss_pred CCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCC-CCCCCccCCHHHHHhH
Q 037727 25 LLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRG-YKHTPGIWTKEQVEAW 102 (205)
Q Consensus 25 Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~-~~~~~~l~~d~~i~~l 102 (205)
||+|++||+++|||||+|+||++..+.+|.||+++++||++||+|| ||||+|+++|++.+.. +++++++|+|+++++|
T Consensus 1 Lf~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~ 80 (361)
T cd04747 1 LFTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGW 80 (361)
T ss_pred CCCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHH
Confidence 8999999999999999999999887788999999999999999999 9999999999866543 4678899999999999
Q ss_pred HHHHHHHHHcCCeeeEecccccccccCCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 037727 103 KPIVAEVQAKGGIFFCQLLHAGRISNRDFQ-PNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAA 181 (205)
Q Consensus 103 ~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~-~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA 181 (205)
|+|+|+||++|+++++||+|+||++..... ..+..+++||+++... ...|++||++||+++|++|++||
T Consensus 81 ~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~----------~~~p~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 81 KKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPG----------KPVGREMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCC----------CCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765321 1234467888765321 24589999999999999999999
Q ss_pred HHHHHccccee---eccchhhhhhcCC
Q 037727 182 RNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 182 ~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
+||++|||||| +||||||+|||||
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp 177 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWA 177 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCC
Confidence 99999999999 9999999999998
No 11
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=4.3e-51 Score=357.51 Aligned_cols=172 Identities=33% Similarity=0.482 Sum_probs=155.6
Q ss_pred CCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHH
Q 037727 25 LLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 25 Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~ 103 (205)
||+|++||+++|||||+|+||+++.+.+|.||+++++||++||+|| ||||+|+++|++.++.+++++++|+|+++++||
T Consensus 1 Lf~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~ 80 (336)
T cd02932 1 LFTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALK 80 (336)
T ss_pred CCCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHH
Confidence 8999999999999999999999877779999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeEecccccccccCCCCC-----------CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 037727 104 PIVAEVQAKGGIFFCQLLHAGRISNRDFQP-----------NGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQ 172 (205)
Q Consensus 104 ~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~-----------~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ 172 (205)
+|+|+||++|+++++||+|+||++...... .+..+++||.++... ....|++||++||++
T Consensus 81 ~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~---------~~~~p~~mt~~eI~~ 151 (336)
T cd02932 81 RIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDE---------GWPTPRELTREEIAE 151 (336)
T ss_pred HHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCC---------CCCCCCcCCHHHHHH
Confidence 999999999999999999999998654210 123467888765431 235689999999999
Q ss_pred HHHHHHHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 173 IVNDFRIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 173 ii~~f~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
+|++|++||++|++|||||| +||||||+|||||
T Consensus 152 ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp 187 (336)
T cd02932 152 VVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSP 187 (336)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCC
Confidence 99999999999999999999 9999999999998
No 12
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=6e-51 Score=358.77 Aligned_cols=166 Identities=24% Similarity=0.300 Sum_probs=152.1
Q ss_pred CCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHH
Q 037727 25 LLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 25 Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~ 103 (205)
||+|++||+++|||||||+||++.++.+|.+|+++++||++||+|| ||||+|+++|++.++.+++++++|+|+++++||
T Consensus 1 lf~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~ 80 (353)
T cd02930 1 LLSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHR 80 (353)
T ss_pred CCCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHH
Confidence 7999999999999999999999777666889999999999999999 999999999999999899999999999999999
Q ss_pred HHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 037727 104 PIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARN 183 (205)
Q Consensus 104 ~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~r 183 (205)
+++++||++|+++++||+|+||++... .+++||+++... ....|++||++||++++++|++||+|
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~~------~~~~ps~~~~~~---------~~~~p~~mt~~eI~~i~~~f~~aA~~ 145 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYHP------LCVAPSAIRAPI---------NPFTPRELSEEEIEQTIEDFARCAAL 145 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCCC------CCcCCCCCCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987543 257888765432 12468999999999999999999999
Q ss_pred HHHccccee---eccchhhhhhcCC
Q 037727 184 AIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 184 a~~AGfDgV---~ahGyLl~qFlSp 205 (205)
|++|||||| +||||||+|||||
T Consensus 146 a~~aGfDgVeih~ahGyLl~qFlsp 170 (353)
T cd02930 146 AREAGYDGVEIMGSEGYLINQFLAP 170 (353)
T ss_pred HHHcCCCEEEEecccchHHHHhcCC
Confidence 999999999 9999999999998
No 13
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=1.6e-50 Score=357.96 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=151.7
Q ss_pred CCCcCCCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCC-CCccCCHH
Q 037727 20 NNIIPLLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKH-TPGIWTKE 97 (205)
Q Consensus 20 ~~~~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~-~~~l~~d~ 97 (205)
..|++||+|++||+++|||||||+||++..+.. . ++.++.||++||+|| ||||+|+++|++.+..+++ ++++|+|+
T Consensus 3 ~~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~-~-~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~ 80 (370)
T cd02929 3 PRHDILFEPIKIGPVTARNRFYQVPHCNGMGYR-K-PSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDG 80 (370)
T ss_pred ccccccCCCccCCCEEeccceEECCcccCcCCC-C-hHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHH
Confidence 468999999999999999999999998876532 2 234678999999999 9999999999999988877 79999999
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDF 177 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 177 (205)
++++||+|+++||++|+++++||+|+||++.... .+..+++||+++.... ......|++||++||+++|++|
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~--~~~~~~~ps~~~~~~~------~~~~~~p~~mt~~eI~~ii~~f 152 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRE--SRETPLGPSQLPSEFP------TGGPVQAREMDKDDIKRVRRWY 152 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecccCCCCCCccC--CCCCccCCCCCCCCcc------ccCCCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999876431 2334688887654310 0122468999999999999999
Q ss_pred HHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 178 RIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 178 ~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
++||+||++|||||| +||||||+|||||
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp 183 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGYLPLQFLLP 183 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhhCc
Confidence 999999999999999 9999999999998
No 14
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.1e-50 Score=352.77 Aligned_cols=169 Identities=36% Similarity=0.590 Sum_probs=155.3
Q ss_pred CCcceeCCeecCCceEeCCCCCCcc-CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHH
Q 037727 26 LTPYKMGSFNLSHRIVLAPLSRMRS-YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 26 f~Pi~ig~~~lkNRiv~aPm~~~~~-~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~ 103 (205)
|+|++||+++|||||+|+||++..+ .+|.||+++++||++||+|| ||||+|+++|++.++.+++++++|+|+++++||
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 8999999999999999999999887 58999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 037727 104 PIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARN 183 (205)
Q Consensus 104 ~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~r 183 (205)
+++++||++|+++++||+|+||++.... .+..+++||..+... ....|++||++||+++|++|++||++
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~~~~~~~s~~~~~~---------~~~~~~~mt~~ei~~~i~~~~~aA~~ 149 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNL--TGGPPPAPSAIPSPG---------GGEPPREMTKEEIEQIIEDFAAAARR 149 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcC--CCCCccCCCCCCCCC---------CCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987653 233468888655321 23578999999999999999999999
Q ss_pred HHHccccee---eccchhhhhhcCC
Q 037727 184 AIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 184 a~~AGfDgV---~ahGyLl~qFlSp 205 (205)
|++|||||| +||||||+|||||
T Consensus 150 a~~aGfDgveih~~~gyL~~qFlsp 174 (327)
T cd02803 150 AKEAGFDGVEIHGAHGYLLSQFLSP 174 (327)
T ss_pred HHHcCCCEEEEcchhhhHHHHhcCc
Confidence 999999999 9999999999998
No 15
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.7e-49 Score=351.39 Aligned_cols=172 Identities=25% Similarity=0.334 Sum_probs=148.2
Q ss_pred CCCcceeCCeecCCceEeCCCCC-Ccc-CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCC--CCC--CCccCCHH
Q 037727 25 LLTPYKMGSFNLSHRIVLAPLSR-MRS-YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRG--YKH--TPGIWTKE 97 (205)
Q Consensus 25 Lf~Pi~ig~~~lkNRiv~aPm~~-~~~-~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~--~~~--~~~l~~d~ 97 (205)
||+|++||+++|||||||+||++ ..+ .+|.||+++++||++||+|| ||||+|+++|++.+.. .++ ++.+++++
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 89999999999999999999986 444 68999999999999999999 9999999999987643 223 34567788
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccc-cccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHA-GRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVND 176 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~-Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 176 (205)
++++||+|+|+||++|+++++||+|+ ||++.+... .+..+++||+++.+.. ....|++||++||++||++
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~-~~~~~~~ps~~~~~~~--------~~~~p~~mt~~eI~~ii~~ 151 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFL-GEDKPVAPSPIPNRWL--------PEITCRELTTEEVETFVGK 151 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCcccc-CCCCccCCCCCCCCcC--------CCCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999997 999876532 2245789998765321 1256899999999999999
Q ss_pred HHHHHHHHHHccccee---ecc-chhhhhhcCC
Q 037727 177 FRIAARNAIEAEIKSS---KQL-GYVLEIECSY 205 (205)
Q Consensus 177 f~~AA~ra~~AGfDgV---~ah-GyLl~qFlSp 205 (205)
|++||+||++|||||| +|| ||||+|||||
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp 184 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTIS 184 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCC
Confidence 9999999999999999 788 9999999998
No 16
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=8.8e-49 Score=374.21 Aligned_cols=177 Identities=29% Similarity=0.429 Sum_probs=158.9
Q ss_pred CCCcCCCCcceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHH
Q 037727 20 NNIIPLLTPYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQ 98 (205)
Q Consensus 20 ~~~~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~ 98 (205)
..+++||+|++||+++|||||+|+||+.+.+.+|.||+.+++||++||+|| ||||+|+++|++.|+.+++++++|+|++
T Consensus 394 ~~~~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~ 473 (765)
T PRK08255 394 RPPPPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQ 473 (765)
T ss_pred CCcccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHH
Confidence 457999999999999999999999998877778999999999999999999 9999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHc-CCeeeEecccccccccCCCC---------CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q 037727 99 VEAWKPIVAEVQAK-GGIFFCQLLHAGRISNRDFQ---------PNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTG 168 (205)
Q Consensus 99 i~~l~~l~~~vH~~-G~~i~~QL~H~Gr~~~~~~~---------~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~ 168 (205)
+++||+++|+||++ |+++++||+|+||++..... ..+..+++||+++... ....|++||++
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~---------~~~~p~~mt~~ 544 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLP---------GSQVPREMTRA 544 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCC---------CCCCCCcCCHH
Confidence 99999999999999 69999999999999865321 0122457888766432 23578999999
Q ss_pred HHHHHHHHHHHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 169 EIPQIVNDFRIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 169 eI~~ii~~f~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
||+++|++|++||+||++|||||| +||||||+|||||
T Consensus 545 eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp 584 (765)
T PRK08255 545 DMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISP 584 (765)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCC
Confidence 999999999999999999999999 9999999999998
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.91 E-value=1.1e-25 Score=197.23 Aligned_cols=176 Identities=32% Similarity=0.439 Sum_probs=106.5
Q ss_pred cCCCCcceeCCeecCCceEeCCCCCCccCCCCC---cHHHHHHHHHHhc-CCCeEEEecceeccCCCCCCCCCccCCHHH
Q 037727 23 IPLLTPYKMGSFNLSHRIVLAPLSRMRSYDYIP---QPHAILYYSQRTT-EGGFLISEASVVSETGRGYKHTPGIWTKEQ 98 (205)
Q Consensus 23 ~~Lf~Pi~ig~~~lkNRiv~aPm~~~~~~~g~~---t~~~~~~y~~rA~-GGGlIi~~~~~V~~~g~~~~~~~~l~~d~~ 98 (205)
..||+|+++|.+.+..|++.+|++.++..+..+ ...+..||.+|.- -|++||++...+.+.+.+....++++.|++
T Consensus 7 ~~~a~~v~~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~ 86 (400)
T KOG0134|consen 7 PELAEPVKMGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQ 86 (400)
T ss_pred cccccccccccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeeccc
Confidence 449999999999998888888888765432222 2234445555443 235555555555544444444555555555
Q ss_pred HHhHHHHHHHHHHcCCe-----------------eeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 037727 99 VEAWKPIVAEVQAKGGI-----------------FFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTP 161 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~-----------------i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~ 161 (205)
.+.|+.++.++|+.++. .++|++|+|+++.... .+.+++.|++..+... .+.....
T Consensus 87 ~~~~~~~~~~~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~q~~~~~---~p~~~~a~~v~~~~~~----~~~~~~~ 159 (400)
T KOG0134|consen 87 NEEWAGNVIAFHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGRQTPCTV---NPTPWGASDVQLPNAI----RGVEFGK 159 (400)
T ss_pred ccccCCceEEEecCCchHHHHHHHhhhhhhhhhhhHHhccCCcccccccc---CCCCCCHHhccCcccc----cchhcCC
Confidence 55555555555544444 4455555555543321 1223444443222100 1123456
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHHHHHccccee---eccchhhhhhcCC
Q 037727 162 PRRLRTGEIPQIV-NDFRIAARNAIEAEIKSS---KQLGYVLEIECSY 205 (205)
Q Consensus 162 ~~~mt~~eI~~ii-~~f~~AA~ra~~AGfDgV---~ahGyLl~qFlSp 205 (205)
|+.||++||++.| |.|+.||+.+.+|||||| +||||||+|||||
T Consensus 160 p~~l~~e~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp 207 (400)
T KOG0134|consen 160 PKPLSKEQIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSP 207 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccC
Confidence 8999999999555 555666666669999999 9999999999997
No 18
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.83 E-value=0.0002 Score=61.84 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=66.6
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccC-CCCCC----------CCCccCC
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSET-GRGYK----------HTPGIWT 95 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~-g~~~~----------~~~~l~~ 95 (205)
+.++.+++|+|.|+.++-.. . -+. ++....+..| |.|+++.+...+. |...| +..++.+
T Consensus 3 ~~~~~G~~~~nPv~~aag~~--~----~~~---~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~ 73 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTF--G----FGG---EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQN 73 (301)
T ss_pred ceEECCEECCCCcEECCcCC--C----CCH---HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCC
Confidence 46789999999999987311 1 122 3344556788 9999998876643 22221 1223333
Q ss_pred HHHHHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 037727 96 KEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVN 175 (205)
Q Consensus 96 d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~ 175 (205)
...-..++.+.+..++.+..+++||. | . -.+
T Consensus 74 ~g~~~~~~~~~~~~~~~~~p~i~si~--g-----------------------------------~------------~~~ 104 (301)
T PRK07259 74 PGVDAFIEEELPWLEEFDTPIIANVA--G-----------------------------------S------------TEE 104 (301)
T ss_pred cCHHHHHHHHHHHHhccCCcEEEEec--c-----------------------------------C------------CHH
Confidence 32222333444444555667777763 1 0 057
Q ss_pred HHHHHHHHHHHcc-ccee
Q 037727 176 DFRIAARNAIEAE-IKSS 192 (205)
Q Consensus 176 ~f~~AA~ra~~AG-fDgV 192 (205)
+|+++|++++++| ||+|
T Consensus 105 ~~~~~a~~~~~aG~~D~i 122 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAI 122 (301)
T ss_pred HHHHHHHHHhccCCcCEE
Confidence 8999999999999 9999
No 19
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.78 E-value=0.00024 Score=61.08 Aligned_cols=106 Identities=10% Similarity=0.114 Sum_probs=69.6
Q ss_pred ceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccC-CCCCC----------CCCccCCH
Q 037727 29 YKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSET-GRGYK----------HTPGIWTK 96 (205)
Q Consensus 29 i~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~-g~~~~----------~~~~l~~d 96 (205)
.++.+++|+|.|+.++- .++ +...+ -+-...|| |.|+++.+...+. +...+ +..++.++
T Consensus 2 ~~~~G~~~~nP~~~aag-----~~~--~~~~~--~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~ 72 (296)
T cd04740 2 VELAGLRLKNPVILASG-----TFG--FGEEL--SRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNP 72 (296)
T ss_pred eEECCEEcCCCCEECCC-----CCC--CHHHH--HHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCc
Confidence 57889999999998742 122 22222 22245688 9999999877643 22222 23345554
Q ss_pred HHHHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 037727 97 EQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVND 176 (205)
Q Consensus 97 ~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 176 (205)
.....++++.+..++.+.++++||.. . -+++
T Consensus 73 g~~~~~~~~~~~~~~~~~p~ivsi~g-------------------------------------~------------~~~~ 103 (296)
T cd04740 73 GVEAFLEELLPWLREFGTPVIASIAG-------------------------------------S------------TVEE 103 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEEec-------------------------------------C------------CHHH
Confidence 44455566666556677888888751 0 1578
Q ss_pred HHHHHHHHHHccccee
Q 037727 177 FRIAARNAIEAEIKSS 192 (205)
Q Consensus 177 f~~AA~ra~~AGfDgV 192 (205)
|+++|++++++|||+|
T Consensus 104 ~~~~a~~~~~~G~d~i 119 (296)
T cd04740 104 FVEVAEKLADAGADAI 119 (296)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999999
No 20
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.46 E-value=0.00036 Score=60.21 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=59.0
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccC-CCC----------CCCCCccCC
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSET-GRG----------YKHTPGIWT 95 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~-g~~----------~~~~~~l~~ 95 (205)
+.+|++++|||+|++||... +. +++.+. ..++.| |+|+++.+.+.+. |.. ..+..++.+
T Consensus 2 ~~~~~g~~l~npi~~aag~~-----~~-~~~~~~---~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~ 72 (300)
T TIGR01037 2 EVELFGIRFKNPLILASGIM-----GS-GVESLR---RIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQN 72 (300)
T ss_pred cEEECCEECCCCCEeCCcCC-----CC-CHHHHH---HHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCC
Confidence 46789999999999999542 11 444444 445568 9999998877642 221 223445666
Q ss_pred HHHHHhHHHHHHHHHHcCCeeeEecc
Q 037727 96 KEQVEAWKPIVAEVQAKGGIFFCQLL 121 (205)
Q Consensus 96 d~~i~~l~~l~~~vH~~G~~i~~QL~ 121 (205)
+.....++.+....++++..+++||.
T Consensus 73 ~g~~~~~~~~~~~~~~~~~pl~~qi~ 98 (300)
T TIGR01037 73 PGVEAFLEELKPVREEFPTPLIASVY 98 (300)
T ss_pred cCHHHHHHHHHHHhccCCCcEEEEee
Confidence 55555677777778888899999994
No 21
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.97 E-value=0.003 Score=55.04 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=28.2
Q ss_pred eCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 31 MGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 31 ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
||++.++|++++|||... |+...... ..+-| +++.+|.+...
T Consensus 1 ~~~~~~~~~l~lAPm~~~-------t~~~fR~l--~~~~g~~~~~temi~~~ 43 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV-------TDSPFRRL--VAEYGAGLTVCEMVSSE 43 (319)
T ss_pred CCCccCCCCEEecCCCCC-------CcHHHHHH--HHHHCCCEEEECCEEEh
Confidence 588999999999999753 22221111 22345 89999887654
No 22
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.20 E-value=0.031 Score=43.71 Aligned_cols=56 Identities=7% Similarity=-0.038 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 57 PHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 57 ~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
+...++++..+++| ++|.++....++.+...... +.+.+..+..+.++++|+.+..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 68 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK------------EVLKEVAAETDLPLGVQLAIND 68 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccc------------cHHHHHHhhcCCcEEEEEccCC
Confidence 67788999999999 99999887776654321110 5566667788999999997644
No 23
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.06 E-value=0.069 Score=45.61 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=30.4
Q ss_pred eeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceecc
Q 037727 30 KMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSE 82 (205)
Q Consensus 30 ~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~ 82 (205)
++.+++|+|.|+.++-.... +.++ .+..+..| |.|++..+...+
T Consensus 2 ~~~G~~~~nPv~~aag~~~~------~~~~---~~~~~~~g~g~vv~kti~~~~ 46 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLLK------TGEL---IARAAAAGFGAVVYKTVTLHP 46 (289)
T ss_pred eECCEECCCCCEeCCCCCCC------CHHH---HHHHHHcCCCeEEeCcccCCC
Confidence 57889999999998854311 2233 33445578 999998887663
No 24
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.52 E-value=0.047 Score=47.78 Aligned_cols=44 Identities=20% Similarity=0.457 Sum_probs=29.4
Q ss_pred ceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 29 YKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 29 i~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
++||+++++|++++|||... |+......- .+-| ++++||.+...
T Consensus 1 ~~i~~~~~~~~~~lAPM~g~-------td~~fR~l~--~~~g~~~~~temvs~~ 45 (321)
T PRK10415 1 MRIGQYQLRNRLIAAPMAGI-------TDRPFRTLC--YEMGAGLTVSEMMSSN 45 (321)
T ss_pred CccCCccCCCCEEecCCCCC-------CcHHHHHHH--HHHCCCEEEEccEEcc
Confidence 36899999999999999642 333222222 2235 99999877654
No 25
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.25 E-value=0.25 Score=43.35 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=29.9
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
++++.+++|+|-|+.++-+.. . +.+ .+.+....| |.|++..+...
T Consensus 3 ~v~~~Gl~l~nPv~~ASg~~~----~--~~e---~~~~~~~~G~Gavv~ktit~~ 48 (325)
T cd04739 3 STTYLGLSLKNPLVASASPLS----R--NLD---NIRRLEDAGAGAIVLPSLFEE 48 (325)
T ss_pred eEEECCEecCCCCEeCCcCCC----C--CHH---HHHHHHHCCCcEEEecccchh
Confidence 457889999999999643211 1 222 344466778 99999887654
No 26
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=94.80 E-value=0.0053 Score=54.93 Aligned_cols=84 Identities=11% Similarity=0.146 Sum_probs=64.8
Q ss_pred CcCCCCcceeC-CeecCCceEeCCCCCCc-------c-CCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCC
Q 037727 22 IIPLLTPYKMG-SFNLSHRIVLAPLSRMR-------S-YDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTP 91 (205)
Q Consensus 22 ~~~Lf~Pi~ig-~~~lkNRiv~aPm~~~~-------~-~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~ 91 (205)
...|-..+++. +-..+||++.+++++.. + ..|.||+.+|.-|..+.-|+ |+|.++++.|+|....+.+..
T Consensus 15 ~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~~~~ 94 (400)
T KOG0134|consen 15 MGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWAGNV 94 (400)
T ss_pred cccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecccccccCCce
Confidence 34566677765 58889999999985432 1 25889999999999999999 999999999999988888887
Q ss_pred ccCCHHHHHhHHHH
Q 037727 92 GIWTKEQVEAWKPI 105 (205)
Q Consensus 92 ~l~~d~~i~~l~~l 105 (205)
.++.+..-..|+++
T Consensus 95 ~~~~e~~~~~~~ql 108 (400)
T KOG0134|consen 95 IAFHENDSFEFRQL 108 (400)
T ss_pred EEEecCCchHHHHH
Confidence 77765433333333
No 27
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.37 E-value=0.21 Score=43.91 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=32.5
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceecc
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSE 82 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~ 82 (205)
+.+++.+.++||++.|||.. .|+....+.-++ -|+ +++.||.+....
T Consensus 1 ~~~~~~~~~~~~~~lAPM~g-------vtd~~fR~l~~~-~ga~~~~~TEmv~~~~ 48 (323)
T COG0042 1 MLKIGLIELRNRVILAPMAG-------VTDLPFRRLARE-LGAYDLLYTEMVSAKA 48 (323)
T ss_pred CCccccccccCcEEEecCCC-------CccHHHHHHHHH-hCCCceEEEccEEEhh
Confidence 45789999999999999974 244432222221 366 899999887654
No 28
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.36 E-value=0.33 Score=42.59 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=29.7
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
.+++++++|||-|+.++-+.. + +.+ .+.+.+..| |-|++..+...
T Consensus 4 ~~~~~Gl~l~nPv~~asg~~~----~--~~~---~~~~~~~~g~Gavv~kti~~~ 49 (334)
T PRK07565 4 STTYLGLTLRNPLVASASPLS----E--SVD---NVKRLEDAGAGAVVLKSLFEE 49 (334)
T ss_pred eEEECCEecCCCCEecCcCCC----C--CHH---HHHHHHHCCCeEEEEeeCCHH
Confidence 567899999999987653321 1 222 344466778 88888876543
No 29
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.97 E-value=0.7 Score=39.91 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=30.1
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
+.++++++|||-|+.++-... . +.+.+.++. .-| |.|++..+...
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~~----~--~~~~~~~~~---~~G~Gavv~kti~~~ 48 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPPT----T--SYPMIRRAF---EAGWGGAVTKTLGLD 48 (299)
T ss_pred ceEECCEEcCCCCEeCCcCCC----C--CHHHHHHHH---HhCCCEEEeccccCc
Confidence 467889999999999883211 1 233333333 237 99999888777
No 30
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.69 E-value=4.7 Score=35.59 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=31.4
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
+.++.|++|+|.|+.|+-.. + + .+.+.+.+..| |.|+++.+...
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~-----~--~---~~~~~~~~~~G~Gavv~ktvt~~ 94 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFD-----K--N---GEAIDALGALGFGFVEVGTVTPR 94 (344)
T ss_pred ceEECCEECCCCCEECCCCC-----C--C---hHHHHHHHHcCCCEEEeCCcCCC
Confidence 67899999999998866321 1 1 13345567888 99999987765
No 31
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.92 E-value=0.35 Score=39.64 Aligned_cols=22 Identities=14% Similarity=-0.059 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHccccee---ecc
Q 037727 174 VNDFRIAARNAIEAEIKSS---KQL 195 (205)
Q Consensus 174 i~~f~~AA~ra~~AGfDgV---~ah 195 (205)
.++|+++|+++++||||+| ++|
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4789999999999999999 555
No 32
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=87.03 E-value=7.4 Score=33.83 Aligned_cols=46 Identities=7% Similarity=0.187 Sum_probs=31.6
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceecc
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSE 82 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~ 82 (205)
+.++.+++|||-|+.++-.. +. +.+ .+.+....| |.|++..+...|
T Consensus 3 ~~~~~Gl~l~NPv~~AsG~~-----~~-~~e---~~~~~~~~g~Gavv~ktit~~p 49 (310)
T PRK02506 3 STQIAGFKFDNCLMNAAGVY-----CM-TKE---ELEEVEASAAGAFVTKSATLEP 49 (310)
T ss_pred ceEECCEECCCCCEeCCCCC-----CC-CHH---HHHHHHHcCCcEEEeCccCCCC
Confidence 46788999999999876432 11 222 234466778 999998877664
No 33
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=86.91 E-value=3.7 Score=35.37 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=46.8
Q ss_pred eeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccC-CCCCC----------CCCccCCHH
Q 037727 30 KMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSET-GRGYK----------HTPGIWTKE 97 (205)
Q Consensus 30 ~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~-g~~~~----------~~~~l~~d~ 97 (205)
++.+++|||-|+.++-... . +.+. +.+.+..| |.|++..+...+. |...| +..++.++
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~----~--~~e~---~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~- 71 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWC----T--TLED---LLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNL- 71 (294)
T ss_pred ccCCeeCCCCCEECCCCCC----C--CHHH---HHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCc-
Confidence 5789999999999874311 1 2232 33334468 9999988766532 32222 22333332
Q ss_pred HHHhHHHHHHHHH----HcCCeeeEeccc
Q 037727 98 QVEAWKPIVAEVQ----AKGGIFFCQLLH 122 (205)
Q Consensus 98 ~i~~l~~l~~~vH----~~G~~i~~QL~H 122 (205)
-++.|.+.....+ +.+..+++||..
T Consensus 72 g~~~~~~~i~~~~~~~~~~~~pvivsi~g 100 (294)
T cd04741 72 GLDYYLEYIRTISDGLPGSAKPFFISVTG 100 (294)
T ss_pred CHHHHHHHHHHHhhhccccCCeEEEECCC
Confidence 2333333333332 357889999974
No 34
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=84.28 E-value=14 Score=33.41 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=27.8
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecce
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASV 79 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~ 79 (205)
+.++.|++|||-|+.++=.... -.+.+..++ + -| |.|++..+.
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~-----~~~~~~~~~-~---~g~Gavv~kti~ 48 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTN-----KYYNVARAF-E---AGWGGVVWKTLG 48 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCC-----CHHHHHHHH-H---hCCCEEEEeecC
Confidence 5678899999999998643211 123333434 2 37 888888765
No 35
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=81.47 E-value=15 Score=31.33 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=41.9
Q ss_pred EeCCCCCCccCCCCCcHHHHH-HHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeee
Q 037727 41 VLAPLSRMRSYDYIPQPHAIL-YYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFF 117 (205)
Q Consensus 41 v~aPm~~~~~~~g~~t~~~~~-~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~ 117 (205)
|.+|+.+.+..+|....+.+. +.+...+.| |+++.|.+ | ....+..++...-++.+++++. ....++
T Consensus 5 v~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~-----G----E~~~ls~~Er~~~~~~~~~~~~-~~~~vi 74 (292)
T PRK03170 5 SITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTT-----G----ESPTLTHEEHEELIRAVVEAVN-GRVPVI 74 (292)
T ss_pred eeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcC-----C----ccccCCHHHHHHHHHHHHHHhC-CCCcEE
Confidence 345555555556666543333 333333345 77776553 2 2344567787888888888763 346677
Q ss_pred Eecccc
Q 037727 118 CQLLHA 123 (205)
Q Consensus 118 ~QL~H~ 123 (205)
++..+.
T Consensus 75 ~gv~~~ 80 (292)
T PRK03170 75 AGTGSN 80 (292)
T ss_pred eecCCc
Confidence 776653
No 36
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=78.85 E-value=19 Score=30.83 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
.++++++++..-+.|+.-++=+.+.|-
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE 46 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGE 46 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcC
Confidence 568999999988999876665555553
No 37
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=78.52 E-value=20 Score=30.56 Aligned_cols=73 Identities=8% Similarity=0.011 Sum_probs=40.4
Q ss_pred eCCCCCCccCCCCCcHH-HHHHHHHHhcC-C--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeee
Q 037727 42 LAPLSRMRSYDYIPQPH-AILYYSQRTTE-G--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFF 117 (205)
Q Consensus 42 ~aPm~~~~~~~g~~t~~-~~~~y~~rA~G-G--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~ 117 (205)
++|+.+-+..+|.+... +..+.+..... | |+++.|.+ | ....+..++..+-++.+++++. ....++
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~Gst-----G----E~~~Lt~~Er~~~~~~~~~~~~-~~~~vi 74 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGST-----G----EGFLLSVEERKQIAEIVAEAAK-GKVTLI 74 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCC-----c----CcccCCHHHHHHHHHHHHHHhC-CCCeEE
Confidence 34444445455555543 33333333344 5 77776653 2 2234566777777777777764 246678
Q ss_pred Eeccccc
Q 037727 118 CQLLHAG 124 (205)
Q Consensus 118 ~QL~H~G 124 (205)
++..+..
T Consensus 75 agv~~~~ 81 (288)
T cd00954 75 AHVGSLN 81 (288)
T ss_pred eccCCCC
Confidence 8776643
No 38
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=77.84 E-value=22 Score=30.62 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=42.8
Q ss_pred EeCCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeee
Q 037727 41 VLAPLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFF 117 (205)
Q Consensus 41 v~aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~ 117 (205)
+.+|+.+.+..+|.+... +.++.+.....| |+++.|.+ | ....+..+|..+-++.+++++. ....++
T Consensus 4 v~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~Gst-----G----E~~~Ls~~Er~~l~~~~~~~~~-g~~pvi 73 (294)
T TIGR02313 4 SIAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTS-----G----EPGSLTLEERKQAIENAIDQIA-GRIPFA 73 (294)
T ss_pred eeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccC-----c----ccccCCHHHHHHHHHHHHHHhC-CCCcEE
Confidence 345565555566666553 333333334455 88877653 2 2344677888888888888764 345666
Q ss_pred Eeccc
Q 037727 118 CQLLH 122 (205)
Q Consensus 118 ~QL~H 122 (205)
++..+
T Consensus 74 ~gv~~ 78 (294)
T TIGR02313 74 PGTGA 78 (294)
T ss_pred EECCc
Confidence 65554
No 39
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=77.34 E-value=20 Score=30.21 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEe
Q 037727 43 APLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQ 119 (205)
Q Consensus 43 aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~Q 119 (205)
+|+.+.+..+|.+..+ +.++.+.....| |+++.|.+ | ....+..++..+-++.+++.+. ....++++
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gst-----G----E~~~ls~~Er~~l~~~~~~~~~-~~~~vi~g 72 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTT-----G----EAPTLTDEERKEVIEAVVEAVA-GRVPVIAG 72 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCC-----c----ccccCCHHHHHHHHHHHHHHhC-CCCeEEEe
Confidence 4444444455555543 333333334445 77766553 2 2334566777777777777764 34667776
Q ss_pred ccc
Q 037727 120 LLH 122 (205)
Q Consensus 120 L~H 122 (205)
..+
T Consensus 73 v~~ 75 (281)
T cd00408 73 VGA 75 (281)
T ss_pred cCC
Confidence 654
No 40
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=77.04 E-value=1.9 Score=37.85 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHccccee
Q 037727 175 NDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 175 ~~f~~AA~ra~~AGfDgV 192 (205)
+.|++||++++++|||+|
T Consensus 77 ~~~~~aA~~~~~~g~d~I 94 (333)
T PRK11815 77 ADLAEAAKLAEDWGYDEI 94 (333)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 568999999999999999
No 41
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=76.64 E-value=26 Score=29.85 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=41.2
Q ss_pred eCCCCCCccCCCCCcHHHHHHHHHH-hcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 42 LAPLSRMRSYDYIPQPHAILYYSQR-TTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 42 ~aPm~~~~~~~g~~t~~~~~~y~~r-A~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
++|+.+.+..+|......+.-+-++ .+.| |+++.|.+ | ....+..++..+-++.+++.+. ....+++
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst-----G----E~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~ 72 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTT-----G----ESPTLSHEEHKKVIEFVVDLVN-GRVPVIA 72 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccC-----c----ccccCCHHHHHHHHHHHHHHhC-CCCeEEE
Confidence 4566555555666665433333333 3445 88876653 2 2344567777777777887764 2356676
Q ss_pred eccc
Q 037727 119 QLLH 122 (205)
Q Consensus 119 QL~H 122 (205)
+..+
T Consensus 73 gv~~ 76 (285)
T TIGR00674 73 GTGS 76 (285)
T ss_pred eCCC
Confidence 6654
No 42
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=76.04 E-value=25 Score=29.81 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=35.8
Q ss_pred CCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEe
Q 037727 43 APLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQ 119 (205)
Q Consensus 43 aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~Q 119 (205)
+|+.+-+..+|..... +.++.+.....| |+++.|.+ | ....+..++..+-++.+++.+. ....++++
T Consensus 6 ~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~Gst-----G----E~~~lt~~Er~~l~~~~~~~~~-~~~~vi~g 75 (284)
T cd00950 6 TALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTT-----G----ESPTLSDEEHEAVIEAVVEAVN-GRVPVIAG 75 (284)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCC-----c----chhhCCHHHHHHHHHHHHHHhC-CCCcEEec
Confidence 4444444445555543 334444434445 77777553 2 1234556666666666666653 33455655
Q ss_pred cc
Q 037727 120 LL 121 (205)
Q Consensus 120 L~ 121 (205)
..
T Consensus 76 v~ 77 (284)
T cd00950 76 TG 77 (284)
T ss_pred cC
Confidence 54
No 43
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=75.90 E-value=11 Score=32.20 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=27.2
Q ss_pred ceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceecc
Q 037727 29 YKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSE 82 (205)
Q Consensus 29 i~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~ 82 (205)
.++.+++|||-|+.++= ...+ .+.. .+..+-| |.|++..+...+
T Consensus 4 ~~~~Gl~l~nPi~~asG---~~~~---~~~~----~~~~~~G~Gavv~ksvt~~~ 48 (295)
T PF01180_consen 4 TNFCGLTLKNPIGLASG---LDKN---GEEI----KRLFDAGFGAVVTKSVTPEP 48 (295)
T ss_dssp EEETTEEESSSEEE-TT---SSTS---SHHH----HHHHHHSSSEEEEEEE-SSG
T ss_pred EEECCEEcCCCcEECCc---CCCC---chhh----hhhhcCCccEEEeccccccc
Confidence 47899999999999762 1112 2333 3333447 899998877653
No 44
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=75.82 E-value=19 Score=30.23 Aligned_cols=124 Identities=13% Similarity=0.056 Sum_probs=69.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCC-CCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccccccccC
Q 037727 51 YDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYK-HTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNR 129 (205)
Q Consensus 51 ~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~-~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~ 129 (205)
-.+.+++++++.-.+ -+. ..+..-|+.+... ..-|++-..+...++++++.+|+.|..+++=+---=.+-..
T Consensus 67 lE~a~t~em~~ia~~-~kP------~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~ 139 (234)
T cd00003 67 LEMAPTEEMLEIALE-VKP------HQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEA 139 (234)
T ss_pred eccCCCHHHHHHHHH-CCC------CEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 356678887764333 333 1222224433211 12233445678899999999999999877654311000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcccceeeccch
Q 037727 130 DFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARNAIEAEIKSSKQLGY 197 (205)
Q Consensus 130 ~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~AGfDgV~ahGy 197 (205)
. ..++...+.... +.....++.++.++-++.+..||+.|.+.|.-.-+|||-
T Consensus 140 A------~~~GAd~VELhT----------G~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgL 191 (234)
T cd00003 140 A------KEVGADRVELHT----------GPYANAYDKAEREAELERIAKAAKLARELGLGVNAGHGL 191 (234)
T ss_pred H------HHhCcCEEEEec----------hhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCC
Confidence 0 001111111111 122445566777777999999999999999754499984
No 45
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=74.13 E-value=4.1 Score=36.43 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccch
Q 037727 163 RRLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLGY 197 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahGy 197 (205)
+.++-++|++|.+.+ .+-|++|.++|+|+| ..||+
T Consensus 221 ~~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGG 268 (361)
T cd04736 221 ASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGG 268 (361)
T ss_pred CcCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCc
Confidence 468889999999998 688999999999999 88876
No 46
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=73.00 E-value=26 Score=29.50 Aligned_cols=124 Identities=11% Similarity=0.034 Sum_probs=69.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCC-CCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccccccccC
Q 037727 51 YDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYK-HTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNR 129 (205)
Q Consensus 51 ~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~-~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~ 129 (205)
-.+.++++++++-.+. +. ..+..-|+.+... ..-|++-..+.+.++++++..|+.|..+.+=+---=.+-..
T Consensus 67 lE~a~~~emi~ia~~v-kP------~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~ 139 (237)
T TIGR00559 67 IEMAPTEEMIRIAEEI-KP------EQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQISA 139 (237)
T ss_pred eccCCCHHHHHHHHHc-CC------CEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3567888888755443 33 1122224433211 12233445678899999999999999877644311000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcccceeeccch
Q 037727 130 DFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARNAIEAEIKSSKQLGY 197 (205)
Q Consensus 130 ~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~AGfDgV~ahGy 197 (205)
..-++...+.... +.....++.+++++-++.+..||+.|.+.|.-.-+|||-
T Consensus 140 ------A~~~GAd~VELhT----------G~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgL 191 (237)
T TIGR00559 140 ------AAEVGADRIEIHT----------GPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNAGHGL 191 (237)
T ss_pred ------HHHhCcCEEEEec----------hhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCC
Confidence 0001111111111 122345566666666899999999999999754499984
No 47
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=72.98 E-value=15 Score=30.24 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.3
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEec
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQL 120 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL 120 (205)
.++....++++.+.+|++|.++++..
T Consensus 104 ~~~~~~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 104 EREMLEELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 46788899999999999999998854
No 48
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=72.38 E-value=19 Score=31.40 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=29.8
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
+.++.|++|+|-|+.|+-. ++ +.+ .+...+..| |.|++..+...
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~-----~~--~~~---~~~~~~~~G~Gavv~ktit~~ 84 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGF-----DK--NAE---AIDALLALGFGFVEVGTVTPR 84 (327)
T ss_pred ceEECCEECCCCCEeCcCC-----CC--CHH---HHHHHHHCCCcEEEEeccCCC
Confidence 5788999999999875521 11 222 334444678 99999987765
No 49
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=71.96 E-value=3.4 Score=36.08 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHccccee
Q 037727 175 NDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 175 ~~f~~AA~ra~~AGfDgV 192 (205)
+.|++||++++++|||+|
T Consensus 75 ~~~~~aA~~~~~~g~d~I 92 (312)
T PRK10550 75 QWLAENAARAVELGSWGV 92 (312)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 568999999999999999
No 50
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.79 E-value=32 Score=29.40 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=43.0
Q ss_pred EeCCCCCCccCCCCCcHH-HHHHHHHHhc-CC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCee
Q 037727 41 VLAPLSRMRSYDYIPQPH-AILYYSQRTT-EG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIF 116 (205)
Q Consensus 41 v~aPm~~~~~~~g~~t~~-~~~~y~~rA~-GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i 116 (205)
+++|+.+-+..+|.+... +.++.+.... .| |+++.|.+ | ....|..++...-++.+++.+. ....+
T Consensus 7 v~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~Gst-----G----E~~~Ls~eEr~~~~~~~~~~~~-~~~~v 76 (293)
T PRK04147 7 VYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGST-----G----EAFLLSTEEKKQVLEIVAEEAK-GKVKL 76 (293)
T ss_pred eeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCc-----c----ccccCCHHHHHHHHHHHHHHhC-CCCCE
Confidence 345555555556666543 3444444444 56 77776643 2 2234566777777777887764 34667
Q ss_pred eEeccccc
Q 037727 117 FCQLLHAG 124 (205)
Q Consensus 117 ~~QL~H~G 124 (205)
+++..+..
T Consensus 77 iagvg~~~ 84 (293)
T PRK04147 77 IAQVGSVN 84 (293)
T ss_pred EecCCCCC
Confidence 88776543
No 51
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=71.26 E-value=66 Score=27.61 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=16.8
Q ss_pred CcceeCCeecCCceEeCCCCC
Q 037727 27 TPYKMGSFNLSHRIVLAPLSR 47 (205)
Q Consensus 27 ~Pi~ig~~~lkNRiv~aPm~~ 47 (205)
...+|.+.++..-|+.+||+.
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g 74 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGL 74 (299)
T ss_pred CceEECCeecCCCeeeCcccc
Confidence 456677888999999999953
No 52
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=71.17 E-value=61 Score=29.29 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=27.4
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
..++++++|||=|+.+.-.... +.+.+..+ ...| |-|++-.+..+
T Consensus 12 st~~~Gl~l~NP~i~ASgp~t~------~~e~~~~~---~~~g~GAVV~KTi~~~ 57 (385)
T PLN02495 12 SVTVNGLKMPNPFVIGSGPPGT------NYTVMKRA---FDEGWGGVIAKTVSLD 57 (385)
T ss_pred eEEECCEEcCCCcEeCCccCCC------CHHHHHHH---HhcCCeEEEeccccCC
Confidence 6788999999999987644311 22332222 2236 77777665543
No 53
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=70.68 E-value=26 Score=29.75 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=36.0
Q ss_pred CCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEe
Q 037727 43 APLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQ 119 (205)
Q Consensus 43 aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~Q 119 (205)
+|+.+.+..+|.+... +.++.+.....| |+++.|.+ | ....+..++...-++.+++.+. ....++++
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~Gst-----G----E~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~g 76 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGST-----G----EFYSLTDEERKELLEIVVEAAA-GRVPVIAG 76 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTT-----T----TGGGS-HHHHHHHHHHHHHHHT-TSSEEEEE
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCC-----c----ccccCCHHHHHHHHHHHHHHcc-CceEEEec
Confidence 4444444456665543 333334344445 78777653 2 2234556666666666666554 35678887
Q ss_pred cccc
Q 037727 120 LLHA 123 (205)
Q Consensus 120 L~H~ 123 (205)
..+.
T Consensus 77 v~~~ 80 (289)
T PF00701_consen 77 VGAN 80 (289)
T ss_dssp EESS
T ss_pred Ccch
Confidence 7653
No 54
>PLN02417 dihydrodipicolinate synthase
Probab=70.36 E-value=47 Score=28.29 Aligned_cols=76 Identities=8% Similarity=-0.063 Sum_probs=41.5
Q ss_pred CceEeCCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCC
Q 037727 38 HRIVLAPLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGG 114 (205)
Q Consensus 38 NRiv~aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~ 114 (205)
++=+.+|+.+-+..+|..... +.++.+.....| |+++.|.+ | ....+..++...-++.+++.+. ...
T Consensus 2 ~~Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst-----G----E~~~ls~~Er~~~~~~~~~~~~-~~~ 71 (280)
T PLN02417 2 KLRLITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTT-----G----EGQLMSWDEHIMLIGHTVNCFG-GKI 71 (280)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccC-----c----chhhCCHHHHHHHHHHHHHHhC-CCC
Confidence 333556665555556666543 333333334445 88776654 2 2234556676666666666643 335
Q ss_pred eeeEecccc
Q 037727 115 IFFCQLLHA 123 (205)
Q Consensus 115 ~i~~QL~H~ 123 (205)
+++++..+.
T Consensus 72 pvi~gv~~~ 80 (280)
T PLN02417 72 KVIGNTGSN 80 (280)
T ss_pred cEEEECCCc
Confidence 677766654
No 55
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=70.19 E-value=5.7 Score=34.82 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 037727 100 EAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVN 175 (205)
Q Consensus 100 ~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~ 175 (205)
+.=|++++.+.+.| |++-|+|.+-++..+.......|+..|..-... -...||-++.++|+.|++
T Consensus 149 ~~Gk~lV~~~N~Lg--IiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~a---------l~~h~RNl~D~qlkaI~~ 213 (313)
T COG2355 149 PFGKELVREMNELG--IIIDLSHLSDKTFWDVLDLSKAPVVASHSNARA---------LVDHPRNLSDEQLKAIAE 213 (313)
T ss_pred HHHHHHHHHHHhcC--CEEEecccCCccHHHHHhccCCceEEecCCchh---------ccCCCCCCCHHHHHHHHh
Confidence 45578999999988 669999998776543211112344444322111 124578899999888764
No 56
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.27 E-value=48 Score=28.56 Aligned_cols=70 Identities=9% Similarity=-0.115 Sum_probs=38.9
Q ss_pred eCCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 42 LAPLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 42 ~aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.+|+.+-+..+|.+... +..+.+.....| |+++.|.+ | ....+..++...-++.+++++. ....+++
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~Gst-----G----E~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~ 81 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGT-----G----EFFSLTPDEYSQVVRAAVETTA-GRVPVIA 81 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCC-----c----CcccCCHHHHHHHHHHHHHHhC-CCCcEEE
Confidence 45555555556655543 333333333445 77776653 2 2234556677777777777663 3456676
Q ss_pred ecc
Q 037727 119 QLL 121 (205)
Q Consensus 119 QL~ 121 (205)
...
T Consensus 82 gv~ 84 (303)
T PRK03620 82 GAG 84 (303)
T ss_pred ecC
Confidence 664
No 57
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=67.68 E-value=49 Score=28.66 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCCCcHHH-HHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 52 DYIPQPHA-ILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 52 ~g~~t~~~-~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
+|.+.... ..+.+.....| |+++.|.+ | ....+..+|...-++..++.+ .....+++...+.+
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst-----G----E~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~ 88 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTF-----G----ECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLN 88 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccc-----c----cchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCC
Confidence 36665443 33333333455 88887664 2 234466777788888888876 34466777665543
No 58
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=67.47 E-value=61 Score=27.74 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=39.2
Q ss_pred eCCCCCCccCCCCCcHHHHHHHHHH--hcC-C-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeee
Q 037727 42 LAPLSRMRSYDYIPQPHAILYYSQR--TTE-G-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFF 117 (205)
Q Consensus 42 ~aPm~~~~~~~g~~t~~~~~~y~~r--A~G-G-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~ 117 (205)
.+|+.+.+..||.+...-+.-+-++ +.| = |+++.|.+ | ....+..+|...-++.+++.+. ....++
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~Gst-----G----E~~~Lt~eEr~~~~~~~~~~~~-~~~pvi 74 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGST-----G----ENFMLSTEEKKEIFRIAKDEAK-DQIALI 74 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcc-----c----ccccCCHHHHHHHHHHHHHHhC-CCCcEE
Confidence 3444445555566655333333322 356 4 77766653 2 2234556666666677777653 235677
Q ss_pred Eeccccc
Q 037727 118 CQLLHAG 124 (205)
Q Consensus 118 ~QL~H~G 124 (205)
++..+..
T Consensus 75 ~gv~~~~ 81 (290)
T TIGR00683 75 AQVGSVN 81 (290)
T ss_pred EecCCCC
Confidence 7776544
No 59
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.30 E-value=17 Score=31.17 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=41.5
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIV 174 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii 174 (205)
+.++++.+.++++.+|++|-.+++-..--| | ...+ +++...
T Consensus 125 e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg----------------~------------------~~~~-----~~~~d~ 165 (265)
T COG1830 125 EREMIENISQVVEDAHELGMPLVAWAYPRG----------------P------------------AIKD-----EYHRDA 165 (265)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEEEEeccC----------------C------------------cccc-----cccccH
Confidence 457889999999999999977665332111 0 0001 145567
Q ss_pred HHHHHHHHHHHHccccee
Q 037727 175 NDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 175 ~~f~~AA~ra~~AGfDgV 192 (205)
+.++.||+.+.+-|.|.|
T Consensus 166 ~~v~~aaRlaaelGADIi 183 (265)
T COG1830 166 DLVGYAARLAAELGADII 183 (265)
T ss_pred HHHHHHHHHHHHhcCCeE
Confidence 788999999999999999
No 60
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=67.16 E-value=28 Score=29.64 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
..+.++++++..-+.|+.-++=+...|
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstG 44 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTG 44 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCC
Confidence 356899999999999987665454444
No 61
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=66.12 E-value=47 Score=27.25 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 97 EQVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 97 ~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
...+.+++.++.+++. +-+++=+.|.|.
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~ 186 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGV 186 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcc
Confidence 3467788888888887 888888999885
No 62
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH). The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
Probab=63.60 E-value=5.8 Score=31.21 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHccccee
Q 037727 173 IVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 173 ii~~f~~AA~ra~~AGfDgV 192 (205)
-...|..-|++|++||||.|
T Consensus 130 d~~k~g~LarLAv~AGFDwV 149 (160)
T PF01085_consen 130 DRSKYGMLARLAVEAGFDWV 149 (160)
T ss_dssp -GGGHHHHHHHHHHTT-SEE
T ss_pred cchhhHHHHHHHhhcccCeE
Confidence 34578999999999999999
No 63
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=62.86 E-value=69 Score=27.41 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
.++++++++..-+.|+.-++=+.+.|
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstG 50 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTG 50 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 56899999999999987665444444
No 64
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=62.12 E-value=11 Score=33.71 Aligned_cols=33 Identities=9% Similarity=0.345 Sum_probs=24.6
Q ss_pred cccccccccccccCCCCcCCCCcceeCCeecCCceEeCCCCC
Q 037727 6 DKITHRDQQEEKNNNNIIPLLTPYKMGSFNLSHRIVLAPLSR 47 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~Lf~Pi~ig~~~lkNRiv~aPm~~ 47 (205)
|+.+++++++-+ ..++|+++++++.|+.+||..
T Consensus 22 p~~~t~~~~~v~---------~~~~i~~~~l~~PivlAPMag 54 (369)
T TIGR01304 22 PSRRTRSSKDVD---------TAWQIDAYRFELPFIAHPMDA 54 (369)
T ss_pred CCCCCCChhhcc---------ceeEEcceecCCceeecCCCc
Confidence 566777775332 236789999999999999963
No 65
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=61.96 E-value=42 Score=28.16 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=66.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCC-CCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccccccccC
Q 037727 51 YDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYK-HTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNR 129 (205)
Q Consensus 51 ~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~-~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~ 129 (205)
-++.||+++++ .....+.- .+..-|+.+..- ..-|++=-.+.+.++.+++.++..|..+.+-+-- -.....
T Consensus 68 lE~a~teEml~-ia~~~kP~------~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~-d~~qi~ 139 (243)
T COG0854 68 LEMAPTEEMLA-IALKTKPH------QVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDP-DPEQIE 139 (243)
T ss_pred cccCchHHHHH-HHHhcCCC------eEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCC-CHHHHH
Confidence 46778888843 22223332 222224433211 1122333457889999999999999987765431 000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcccceeeccch
Q 037727 130 DFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARNAIEAEIKSSKQLGY 197 (205)
Q Consensus 130 ~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~AGfDgV~ahGy 197 (205)
. ...++...+.... |.+.....+-..++-+...+.++++|+.|.+.|.-.-++||-
T Consensus 140 a-----a~~~gA~~IELhT-------G~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnAGHgL 195 (243)
T COG0854 140 A-----AAEVGAPRIELHT-------GPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNAGHGL 195 (243)
T ss_pred H-----HHHhCCCEEEEec-------ccccccCChHHHHHHHHHHHHHHHHHHHHHHcCceEecCCCc
Confidence 0 0001111111111 111111233344456668899999999999999865599983
No 66
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=61.53 E-value=7.4 Score=34.07 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHccccee---eccchh
Q 037727 173 IVNDFRIAARNAIEAEIKSS---KQLGYV 198 (205)
Q Consensus 173 ii~~f~~AA~ra~~AGfDgV---~ahGyL 198 (205)
..++|+++|++++++||++| .+++|+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~ 167 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDS 167 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 35668899999999999999 778774
No 67
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=59.34 E-value=32 Score=29.01 Aligned_cols=122 Identities=13% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCC-CCCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccccccccC
Q 037727 52 DYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGY-KHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNR 129 (205)
Q Consensus 52 ~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~-~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~ 129 (205)
.+.+++++++.-. +-+.- -.++ |+.+.. ...-|++-..+.+.++.+++..|+.|.++.+=+---=.+-..
T Consensus 69 E~a~t~e~~~ia~-~~kP~~vtLV-------PE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~ 140 (239)
T PF03740_consen 69 EMAPTEEMVDIAL-KVKPDQVTLV-------PEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEA 140 (239)
T ss_dssp EEESSHHHHHHHH-HH--SEEEEE---------SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHH
T ss_pred ccCCCHHHHHHHH-hCCcCEEEEC-------CCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 4567788777333 33442 2222 332211 111233345567999999999999999987655321000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHH-HHHHHHHHHHHHHHcccceeeccch
Q 037727 130 DFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRL-RTGEIPQ-IVNDFRIAARNAIEAEIKSSKQLGY 197 (205)
Q Consensus 130 ~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~m-t~~eI~~-ii~~f~~AA~ra~~AGfDgV~ahGy 197 (205)
. ..++...+.... | ....+. ..++.++ +.+.+.+||+.|.+.|.-.-+|||-
T Consensus 141 A------~~~Gad~VELhT-------G---~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnAGHgL 194 (239)
T PF03740_consen 141 A------KELGADRVELHT-------G---PYANAFDDAEEAEEELLERLRDAARYAHELGLGVNAGHGL 194 (239)
T ss_dssp H------HHTT-SEEEEET-------H---HHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEEETT-
T ss_pred H------HHcCCCEEEEeh-------h---HhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCCC
Confidence 0 000000000000 0 111222 2344554 4799999999999999854499983
No 68
>PF13702 Lysozyme_like: Lysozyme-like
Probab=56.50 E-value=43 Score=26.50 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=49.1
Q ss_pred HHHhHHHHHHH-HHHcCCe-------eeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC--CH
Q 037727 98 QVEAWKPIVAE-VQAKGGI-------FFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRL--RT 167 (205)
Q Consensus 98 ~i~~l~~l~~~-vH~~G~~-------i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~m--t~ 167 (205)
.+..|+.+++. ++++|.. +++|--..|+.. .++..|.... ..|..+ ++
T Consensus 4 ~V~~y~~~V~k~a~e~gi~~yv~liLAim~~ESgG~~~---------DvMQSSES~~-------------~~pn~I~dpe 61 (160)
T PF13702_consen 4 EVLQYRPMVEKYAKEYGIPEYVNLILAIMMQESGGKGN---------DVMQSSESLG-------------NPPNSITDPE 61 (160)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHhcCCCCC---------CccccCCCCC-------------CCCCccCCHH
Confidence 45667776665 6777863 344444445321 2333443221 223444 67
Q ss_pred HHHHHHHHHHHHHHHHHHHccc-cee-------eccchh
Q 037727 168 GEIPQIVNDFRIAARNAIEAEI-KSS-------KQLGYV 198 (205)
Q Consensus 168 ~eI~~ii~~f~~AA~ra~~AGf-DgV-------~ahGyL 198 (205)
+-|++-|.-|+++-+.|++.|. |.= .+.||+
T Consensus 62 ~SI~~Gv~~fa~~l~~a~~~~~~di~~alQaYNfG~gyI 100 (160)
T PF13702_consen 62 ESIKQGVKYFADNLKKAKEKGPDDIKTALQAYNFGSGYI 100 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHhhhhcCCccHH
Confidence 7899999999999999999999 432 556664
No 69
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=55.54 E-value=80 Score=27.78 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=29.2
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceec
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVS 81 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~ 81 (205)
+.++.|++|+|-|+.++=. ++ +.+. .+..+.-| |.|+++.+...
T Consensus 47 ~~~~~Gl~l~NPi~lAsG~-----~~--~~~~---~~~~~~~G~Gavv~kTvt~~ 91 (335)
T TIGR01036 47 EVTVLGLKFPNPLGLAAGF-----DK--DGEA---IDALGAMGFGFLEIGTVTPK 91 (335)
T ss_pred cEEECCEECCCCcEeCCcc-----CC--CHHH---HHHHHhcCCCEEEeCCcCCC
Confidence 5678899999999985532 11 2223 33334448 99999987765
No 70
>PRK05402 glycogen branching enzyme; Provisional
Probab=55.04 E-value=74 Score=31.08 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHcCCeeeEec--cccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQL--LHAGRI 126 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL--~H~Gr~ 126 (205)
.+.||++++++|+.|.++++-+ +|.+..
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~ 343 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWVPAHFPKD 343 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 6789999999999999999985 677653
No 71
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=54.89 E-value=16 Score=32.37 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=78.1
Q ss_pred eCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccC--CCC----CCCCCccCCHHHHHhHH
Q 037727 31 MGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSET--GRG----YKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 31 ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~--g~~----~~~~~~l~~d~~i~~l~ 103 (205)
+=+.+++==|+.+||+... .+.| +-..+.-+.-++-| .+++......+.+ .+. .+...-+|-...-...+
T Consensus 58 ~lG~~~~~Pi~iaP~~~~~--~~~~-~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~ 134 (344)
T cd02922 58 ILGHKVSLPFFISPAALAK--LAHP-DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTE 134 (344)
T ss_pred ECCcccCCceeeChHHHhh--hCCc-hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHH
Confidence 3355666677888887432 1112 22234444445566 6666433222211 111 11112223333446788
Q ss_pred HHHHHHHHcCCeee-Eecccc--cccccCCCCCCCC-Ccc--ccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 037727 104 PIVAEVQAKGGIFF-CQLLHA--GRISNRDFQPNGK-API--SYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDF 177 (205)
Q Consensus 104 ~l~~~vH~~G~~i~-~QL~H~--Gr~~~~~~~~~g~-~~~--~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 177 (205)
++.+.+.+.|++++ +-+.-. |++-... .++. .+. .+..........+.........-..++-++|+++++..
T Consensus 135 ~l~~ra~~ag~~alvltvD~p~~g~r~~d~--r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 212 (344)
T cd02922 135 ELLKRAEKLGAKAIFLTVDAPVLGKRERDE--RLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT 212 (344)
T ss_pred HHHHHHHHcCCCEEEEECCCCCcCcchhhh--hhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc
Confidence 99999999999854 344432 3321100 0110 000 00000000000000000000112357889999999877
Q ss_pred -----------HHHHHHHHHccccee--eccc
Q 037727 178 -----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 178 -----------~~AA~ra~~AGfDgV--~ahG 196 (205)
.+-|++|.++|+|+| ..||
T Consensus 213 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg 244 (344)
T cd02922 213 KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG 244 (344)
T ss_pred CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC
Confidence 889999999999999 6675
No 72
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=54.16 E-value=15 Score=32.88 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccc
Q 037727 163 RRLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahG 196 (205)
..+|-++|++|.+.. .+-|++|.++|+|+| +.||
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HG 259 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHG 259 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcC
Confidence 457889999998765 488999999999998 8786
No 73
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=54.09 E-value=87 Score=26.45 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=63.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCCC-CCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccccccccC
Q 037727 51 YDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGYK-HTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNR 129 (205)
Q Consensus 51 ~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~~-~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~ 129 (205)
-.+.++++++++-.+. +.- .+..-|+.+... ..-|++-..+...++++++.+|+.|..+.+=+---=.+-..
T Consensus 70 lE~a~~~em~~ia~~~-kP~------~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~ 142 (239)
T PRK05265 70 LEMAATEEMLDIALEV-KPH------QVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEA 142 (239)
T ss_pred eccCCCHHHHHHHHHC-CCC------EEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3567788877754443 331 122224433211 12233445678999999999999998876644210000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcccceeeccch
Q 037727 130 DFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDFRIAARNAIEAEIKSSKQLGY 197 (205)
Q Consensus 130 ~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~AGfDgV~ahGy 197 (205)
...++...+.... | .....++..+ .+-++.+..||+.|.+.|.-.-+|||-
T Consensus 143 ------A~~~GAd~VELhT-------G---~yA~a~~~~~-~~el~~~~~aa~~a~~lGL~VnAGHgL 193 (239)
T PRK05265 143 ------AAEVGADRIELHT-------G---PYADAKTEAE-AAELERIAKAAKLAASLGLGVNAGHGL 193 (239)
T ss_pred ------HHHhCcCEEEEec-------h---hhhcCCCcch-HHHHHHHHHHHHHHHHcCCEEecCCCC
Confidence 0001111111111 0 1112222222 333689999999999999754499984
No 74
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=52.35 E-value=17 Score=32.69 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccc
Q 037727 164 RLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 164 ~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahG 196 (205)
.+|=++|+.|++.. .+.|++|.++|+|+| .+||
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hG 276 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG 276 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCC
Confidence 57888999999876 589999999999999 6665
No 75
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=51.17 E-value=20 Score=29.71 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHHcCCeeeE--ecccccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFC--QLLHAGRIS 127 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~--QL~H~Gr~~ 127 (205)
.+.|++|++++|+.|.++++ -++|.+...
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVPNHTSDDH 81 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETSEEETTS
T ss_pred hhhhhhhhhccccccceEEEeeecccccccc
Confidence 67899999999999999986 567877643
No 76
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=50.29 E-value=66 Score=27.00 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHcCCeeeEeccccccc
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGRI 126 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~ 126 (205)
.++.+++.++.+++.++-+++=|.|.|..
T Consensus 168 ~~~~~~~~v~~lr~~~~D~IIvl~H~g~~ 196 (277)
T cd07410 168 PVETAKKYVPKLRAEGADVVVVLAHGGFE 196 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCCcC
Confidence 45689999999999899999999999864
No 77
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=50.19 E-value=9 Score=29.07 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHH------HHHHHHHcccceeeccchhhhhhcC
Q 037727 162 PRRLRTGEIPQIVNDFRI------AARNAIEAEIKSSKQLGYVLEIECS 204 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~------AA~ra~~AGfDgV~ahGyLl~qFlS 204 (205)
.+.+|+++|........+ -...|+++||.+..+||.|+..+++
T Consensus 15 ~~tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~~fg~~ia~G~l~~s~~~ 63 (142)
T cd03452 15 RRTVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHGYFVLSAAA 63 (142)
T ss_pred CEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeeecHHHHHHHHh
Confidence 467999999887775532 2345678999999999998776653
No 78
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=49.80 E-value=49 Score=29.10 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 56 QPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 56 t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
.++..+|-+..|.=| =-|++-++.+++ .+-+++.++.+++|++..+.||.++.+-++-+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~---------~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFa 115 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANP---------KLLTPEYLDKVARLADVFRPYGIKVYLSVNFA 115 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--C---------GGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred hhHHHHHHHHHhhcCCceEEecccccCh---------hhcCHHHHHHHHHHHHHHhhcCCEEEEEeecc
Confidence 367888888888777 334444544443 34578899999999999999999999877654
No 79
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=48.98 E-value=28 Score=28.96 Aligned_cols=74 Identities=8% Similarity=0.075 Sum_probs=43.1
Q ss_pred ceEeCCCCCCccCCCCCcHHHHHHHHHHhcCCCeEEEecceeccCCCCC------C-CCCccCCHHHHHhHHHHHHHHHH
Q 037727 39 RIVLAPLSRMRSYDYIPQPHAILYYSQRTTEGGFLISEASVVSETGRGY------K-HTPGIWTKEQVEAWKPIVAEVQA 111 (205)
Q Consensus 39 Riv~aPm~~~~~~~g~~t~~~~~~y~~rA~GGGlIi~~~~~V~~~g~~~------~-~~~~l~~d~~i~~l~~l~~~vH~ 111 (205)
+|+.+||..- |+ ..|-...++.+|+.++|+...+...... . +.--+.++ ..+.+++....+++
T Consensus 1 ~~~lApMag~-------td--~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~-~~~~~~~~~~~~~~ 70 (233)
T cd02911 1 PVALASMAGI-------TD--GDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDD-PLEFIEGEIKALKD 70 (233)
T ss_pred CceeeecCCC-------cC--HHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccc-hHHHHHHHHHHhhc
Confidence 4788999631 22 2344445555588888887664221100 0 01112233 66677777777788
Q ss_pred cCCeeeEeccc
Q 037727 112 KGGIFFCQLLH 122 (205)
Q Consensus 112 ~G~~i~~QL~H 122 (205)
.+..+++||.-
T Consensus 71 ~~~p~~vqi~g 81 (233)
T cd02911 71 SNVLVGVNVRS 81 (233)
T ss_pred cCCeEEEEecC
Confidence 88899999963
No 80
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=48.77 E-value=21 Score=32.19 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccc
Q 037727 163 RRLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahG 196 (205)
..+|-++|++|++.+ .+-|++|.++|+|+| ..||
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhG 284 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHG 284 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCC
Confidence 357889999999873 578999999999999 5554
No 81
>PLN02535 glycolate oxidase
Probab=48.37 E-value=22 Score=31.84 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccc
Q 037727 163 RRLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahG 196 (205)
..+|-++|+.+.+.+ .+-|++|.++|+|+| .+||
T Consensus 208 ~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~G 254 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHG 254 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCC
Confidence 468899999999866 467899999999999 6665
No 82
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=47.45 E-value=1.2e+02 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.051 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
.++.+++.++++++ ++-+++=+.|.|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~ 184 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGV 184 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCcc
Confidence 36778888888887 5888888999885
No 83
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=47.38 E-value=39 Score=30.11 Aligned_cols=19 Identities=11% Similarity=-0.191 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHccccee
Q 037727 174 VNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 174 i~~f~~AA~ra~~AGfDgV 192 (205)
.+-.+.||+.|.+.|.|.|
T Consensus 216 ~d~Ia~AaRiaaELGADIV 234 (348)
T PRK09250 216 ADLTGQANHLAATIGADII 234 (348)
T ss_pred HHHHHHHHHHHHHHcCCEE
Confidence 3577899999999999999
No 84
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=47.35 E-value=31 Score=25.18 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcccc----ee-----eccchhhh
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIK----SS-----KQLGYVLE 200 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfD----gV-----~ahGyLl~ 200 (205)
+||+.|+++-|...-+-|+.|.+.|.= .. .|..||++
T Consensus 6 eMs~~EL~~Ei~~L~ekarKAEq~G~~nE~aV~erK~~mAksYl~d 51 (102)
T PF08838_consen 6 EMSEEELRQEIARLKEKARKAEQLGIVNEYAVYERKIIMAKSYLLD 51 (102)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHCCS-
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhCC
Confidence 699999999999999999999998742 22 56666654
No 85
>PRK08227 autoinducer 2 aldolase; Validated
Probab=46.76 E-value=56 Score=27.92 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=18.5
Q ss_pred HHHHHhHHHHHHHHHHcCCeeeE
Q 037727 96 KEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 96 d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.+++..+.++++.+|++|-.+++
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE
Confidence 46788888888899999887665
No 86
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=45.41 E-value=18 Score=31.71 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHccccee
Q 037727 175 NDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 175 ~~f~~AA~ra~~AGfDgV 192 (205)
+.|++||+++.++|||+|
T Consensus 67 ~~~~~aA~~~~~~g~d~I 84 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEI 84 (318)
T ss_pred HHHHHHHHHHHhCCCCEE
Confidence 568899999999999999
No 87
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=45.25 E-value=79 Score=26.19 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
.++.+++.++.++ .++-+++=..|.|.
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~ 195 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGI 195 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCC
Confidence 4577788888888 45666666677774
No 88
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=44.59 E-value=25 Score=29.79 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHccccee
Q 037727 169 EIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 169 eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
.+++++|.=.+-|.+.+++|||+|
T Consensus 28 ~~~~vid~A~~dA~~leegG~Dav 51 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAV 51 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEE
Confidence 588999999999999999999999
No 89
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=43.78 E-value=86 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHHHHcCCeeeE
Q 037727 96 KEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 96 d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.+.+...+++.+.+|++|..+++
T Consensus 119 ~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 119 WEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 46778899999999999998877
No 90
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=43.25 E-value=98 Score=28.50 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCCCeEEEe--cceecc-----CCC------CCCCCCccCCHHHHHhHH
Q 037727 37 SHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEGGFLISE--ASVVSE-----TGR------GYKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 37 kNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GGGlIi~~--~~~V~~-----~g~------~~~~~~~l~~d~~i~~l~ 103 (205)
+|||+++- .+-+..++-.+.||+|-|+-|.. ..-+.. ++. .+|+..| -.++.|+
T Consensus 164 ~~~~~V~~---------~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~~G----~~~~d~~ 230 (450)
T COG0403 164 RNKFLVPK---------DVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNTFG----IVEEDLR 230 (450)
T ss_pred CceEEecC---------CCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCCCCC----ccchhHH
Confidence 68888743 23467788899999986554432 222211 111 1233222 2455699
Q ss_pred HHHHHHHHcCCeeeE
Q 037727 104 PIVAEVQAKGGIFFC 118 (205)
Q Consensus 104 ~l~~~vH~~G~~i~~ 118 (205)
.+.+.+|++|+.+++
T Consensus 231 ~l~~~~h~~~al~~v 245 (450)
T COG0403 231 ALIEAAHSAGALVIV 245 (450)
T ss_pred HHHHHHhhcCCEEEE
Confidence 999999999997664
No 91
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=42.66 E-value=1e+02 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=19.7
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
..+..+.++++.+.+|++|..+++
T Consensus 121 ~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 121 EAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE
Confidence 346788899999999999988776
No 92
>PRK06852 aldolase; Validated
Probab=42.44 E-value=76 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHcCCeeeE
Q 037727 96 KEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 96 d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.+++..+.++++.+|++|-.+++
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE
Confidence 46788888999999999988666
No 93
>PLN02979 glycolate oxidase
Probab=42.22 E-value=27 Score=31.30 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHHccccee--eccc
Q 037727 163 RRLRTGEIPQIVND-----------FRIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 163 ~~mt~~eI~~ii~~-----------f~~AA~ra~~AGfDgV--~ahG 196 (205)
..+|=+||+.+.+. ..+-|++|.++|.|+| .+||
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhG 254 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHG 254 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCC
Confidence 45888999998874 5788999999999999 6665
No 94
>PLN02784 alpha-amylase
Probab=42.18 E-value=2.5e+02 Score=28.39 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHcCCeeeEe--ccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQ--LLHAG 124 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~Q--L~H~G 124 (205)
.+.|+.+++++|++|.++++- ++|.+
T Consensus 567 ~~ELk~LI~a~H~~GIkVIlDiViNH~a 594 (894)
T PLN02784 567 IDELKDLVKSFHEVGIKVLGDAVLNHRC 594 (894)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 568999999999999999886 57754
No 95
>smart00642 Aamy Alpha-amylase domain.
Probab=41.86 E-value=31 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=22.7
Q ss_pred HHhHHHHHHHHHHcCCeeeEec--ccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQL--LHAGR 125 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL--~H~Gr 125 (205)
.+.|+++++++|++|.++++-+ +|.+.
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 5789999999999999999765 66554
No 96
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=40.88 E-value=29 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccc
Q 037727 164 RLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 164 ~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahG 196 (205)
.+|-++|+++.+.. .+-|++|.++|+|+| ..||
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhG 252 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHG 252 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 47889999988754 578899999999999 6675
No 97
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=39.45 E-value=39 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=27.0
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
-++.|..-|++++.+|++|.-+=.+|.|-|.
T Consensus 109 ~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g 139 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYGVSVEAELGHIGG 139 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEESBSSS
T ss_pred HHHHHHHHHHHHHhhhhhCCEEEEEeeeeec
Confidence 4688999999999999999999999988764
No 98
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=38.66 E-value=40 Score=20.90 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHH--HHHHHHHHHHHccccee-eccch
Q 037727 164 RLRTGEIPQIVN--DFRIAARNAIEAEIKSS-KQLGY 197 (205)
Q Consensus 164 ~mt~~eI~~ii~--~f~~AA~ra~~AGfDgV-~ahGy 197 (205)
-||.+||.++-. ....-++..++.|...+ .+.|.
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCeeEECCCCC
Confidence 389999999985 34444455567888888 67775
No 99
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=37.61 E-value=66 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHccc
Q 037727 160 TPPRRLRTGEIPQIVNDFRIAARNAIEAEI 189 (205)
Q Consensus 160 ~~~~~mt~~eI~~ii~~f~~AA~ra~~AGf 189 (205)
..|..|+.++.+++...-.+.|...+++|.
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~ 39 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGK 39 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence 357889999999999999999999999884
No 100
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=37.46 E-value=24 Score=30.69 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 037727 100 EAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIV 174 (205)
Q Consensus 100 ~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii 174 (205)
+.=+++++++.+.| +++=+.|.+.++..+...-...|+-.|...... -...||-||.++|+.|.
T Consensus 154 ~~G~~vv~~mn~lG--miiDvSH~s~~~~~dv~~~s~~PviaSHsn~ra---------l~~h~RNltD~~i~~ia 217 (309)
T cd01301 154 PFGKELVREMNRLG--IIIDLSHLSERTFWDVLDISNAPVIASHSNARA---------LCDHPRNLTDAQLKAIA 217 (309)
T ss_pred HHHHHHHHHHHHcC--CEEEcCCCCHHHHHHHHHhcCCCEEEeccChHH---------hcCCCCCCCHHHHHHHH
Confidence 45577888888888 568899998766433211112233334322111 12457889999999884
No 101
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=37.34 E-value=1.4e+02 Score=25.74 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
.+.++.++++..+.++.+++|+....
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~ 53 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSNGA 53 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcch
Confidence 56788899999999999999987543
No 102
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.45 E-value=1.6e+02 Score=25.35 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVNDF 177 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 177 (205)
..++++++++..-+.|+.-++=+...|- .-.||.+|-.++++..
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE------------------------------------~~~Ls~eEr~~v~~~~ 66 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGE------------------------------------SPTLTLEERKEVLEAV 66 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcc------------------------------------chhcCHHHHHHHHHHH
Q ss_pred HHHH----------------------HHHHHccccee
Q 037727 178 RIAA----------------------RNAIEAEIKSS 192 (205)
Q Consensus 178 ~~AA----------------------~ra~~AGfDgV 192 (205)
++++ +.|+++|+|||
T Consensus 67 v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~i 103 (299)
T COG0329 67 VEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGI 103 (299)
T ss_pred HHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEE
No 103
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=36.10 E-value=1.2e+02 Score=27.07 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 54 IPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 54 ~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.|-++....-+.....| -+-++|..+|+.+-+... -.-|++|+.|++..+.+-+.|.++++
T Consensus 40 W~~~~I~~~k~~ie~~Gl~~~vvESvPvhedIK~g~----~~rd~~Ieny~~tirnLa~~GI~vvC 101 (362)
T COG1312 40 WPVEEILKRKEEIESAGLTWSVVESVPVHEDIKLGT----PTRDRYIENYKQTIRNLARAGIKVVC 101 (362)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecCCCHHHHHHhcC----CcHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 45566666666666777 777899999986633211 13578999999999999999998776
No 104
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=36.08 E-value=43 Score=31.50 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHcCCeeeEec--cccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQL--LHAGRI 126 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL--~H~Gr~ 126 (205)
.+.||++++++|+.|.++++-+ +|.|..
T Consensus 159 ~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~ 188 (542)
T TIGR02402 159 PDDLKALVDAAHGLGLGVILDVVYNHFGPE 188 (542)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCCCCCc
Confidence 6789999999999999999875 676653
No 105
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=35.42 E-value=46 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccccee---eccchh
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIKSS---KQLGYV 198 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgV---~ahGyL 198 (205)
+.-.+||-+=++.|+.||+..++-|.--| +-||-|
T Consensus 250 aimvddiiddvqsfvaaae~lkergaykiyv~athgll 287 (354)
T KOG1503|consen 250 AIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLL 287 (354)
T ss_pred EEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccc
Confidence 45567888889999999999999999888 899954
No 106
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=35.08 E-value=22 Score=27.43 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHH-------HHHHHHHHHHcccceeeccchhhhhh
Q 037727 162 PRRLRTGEIPQIVND-------FRIAARNAIEAEIKSSKQLGYVLEIE 202 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~-------f~~AA~ra~~AGfDgV~ahGyLl~qF 202 (205)
++.+|+++|...... |.+ ...|+++||.++-+||.|+..+
T Consensus 21 ~~~vt~~di~~FA~~sgD~nPiH~D-~e~A~~~gfg~~Ia~G~~t~sl 67 (149)
T cd03450 21 WVTVDQERIDQFADATGDHQWIHVD-PERAAAEPFGGTIAHGFLTLSL 67 (149)
T ss_pred CEEECHHHHHHHHHhhCCCCccccC-HHHHhhCCCCCeEECHHHHHHH
Confidence 467999999888775 333 3366788999998888775444
No 107
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.54 E-value=1e+02 Score=26.41 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEec
Q 037727 56 QPHAILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQL 120 (205)
Q Consensus 56 t~~~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL 120 (205)
++..+.|.+...+.| ++.+.+.. +...--.+..+.+-..+.++++++.+|+.|.++++-+
T Consensus 167 ~~~~~~~~~~~~~~G~d~i~i~d~~-----~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~ 228 (330)
T cd03465 167 TEFIIRYADALIEAGADGIYISDPW-----ASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCc-----cccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEE
Confidence 344566666655555 33333321 1111001223555678999999999999998877644
No 108
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=33.36 E-value=55 Score=28.31 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCC-eeeEeccccccc
Q 037727 56 QPHAILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGG-IFFCQLLHAGRI 126 (205)
Q Consensus 56 t~~~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~-~i~~QL~H~Gr~ 126 (205)
++..+.|++...+.| ++.+.. ..+.. -.+..+.+-..|.++++++.+|+.|. ++++ +.+|..
T Consensus 181 ~~~~~~~~~~~~~~G~d~i~~~d-----~~~~~--isp~~f~e~~~P~~k~i~~~i~~~g~~~~~l--H~cG~~ 245 (343)
T PF01208_consen 181 TDFIIEYAKAQIEAGADGIFIFD-----SSGSL--ISPEMFEEFILPYLKKIIDAIKEAGKDPVIL--HICGNT 245 (343)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEE-----TTGGG--S-HHHHHHHTHHHHHHHHHHHHHHETE-EEE--EETTHG
T ss_pred HHHHHHHHHHHHHhCCCcccccc-----cccCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCceEE--EECCch
Confidence 455677777777766 444444 11111 12234555678999999999999998 5543 334543
No 109
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=33.25 E-value=1.9e+02 Score=26.28 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEe
Q 037727 57 PHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQ 119 (205)
Q Consensus 57 ~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~Q 119 (205)
++..+.=+.....| -+-++|+.+|+.+-+.. .+ .-|++|+.+++....+-+.|.++++-
T Consensus 43 ~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g--~~--~rd~~Ienyk~~irNla~~GI~vicY 102 (394)
T TIGR00695 43 EEIRKRKEYIESAGLHWSVVESVPVHEAIKTG--TG--NYGRWIENYKQTLRNLAQCGIKTVCY 102 (394)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccHHHHcC--CC--cHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 44444444444567 77788999988543321 11 46889999999999999999987763
No 110
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=33.19 E-value=27 Score=26.05 Aligned_cols=41 Identities=10% Similarity=-0.155 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHH------HHHHHHHcccceeeccchhhhhh
Q 037727 162 PRRLRTGEIPQIVNDFRI------AARNAIEAEIKSSKQLGYVLEIE 202 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~------AA~ra~~AGfDgV~ahGyLl~qF 202 (205)
.+.+|.++|..+.....+ -...|+++||+++.+||.|+-.+
T Consensus 18 ~~tvt~~~i~~fa~~~gd~~piH~D~~~a~~~~~~~~ia~G~l~~~~ 64 (146)
T cd03451 18 GRTVTEADNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSL 64 (146)
T ss_pred CeEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCccccHHhHHHH
Confidence 467999999888776643 23457789999998888876544
No 111
>cd00347 Flavin_utilizing_monoxygenases Flavin-utilizing monoxygenases
Probab=32.39 E-value=49 Score=21.44 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHccccee
Q 037727 170 IPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 170 I~~ii~~f~~AA~ra~~AGfDgV 192 (205)
-....+...+-|++|.+.|||++
T Consensus 17 ~~~~~~~~~~~a~~ae~~G~~~~ 39 (90)
T cd00347 17 AAEDLEYLVELARLAERLGFDAA 39 (90)
T ss_pred HHHHHHHHHHHHHHHHHcCchhh
Confidence 44566778888999999999987
No 112
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=32.12 E-value=1e+02 Score=27.52 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 56 QPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 56 t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.+.+.++=+...+.| -+-++|+..|+.+-+. +.+ .-|++|+.+++..+.+-+.|.++++
T Consensus 44 ~e~i~~~k~~ie~~GL~~~vIEsvpv~e~Ikl--G~~--~RD~~Ieny~~~Irnlg~~GI~vvc 103 (351)
T PF03786_consen 44 YEEIRALKERIEAAGLTLSVIESVPVHEDIKL--GLP--GRDEEIENYKQTIRNLGKAGIKVVC 103 (351)
T ss_dssp HHHHHHHHHHHHCTT-EEEEEES----HHHHC--T-T--THHHHHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCChHHHHhc--CCC--cHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 344444444445567 7778898888643221 111 3588999999999999999998654
No 113
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.07 E-value=1e+02 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=27.6
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
-++.++.-|++++.+|..|.-+=..|.|-|
T Consensus 108 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence 478899999999999999999999999876
No 114
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=31.71 E-value=17 Score=31.86 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVN 175 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~ 175 (205)
-+.=|++++++-+.| +++=++|.+.++..+.......|+-.|...... -...||-||.++|+.|.+
T Consensus 159 T~~G~~vV~~mn~lG--m~vDvSH~s~~t~~Dv~~~s~~PviaSHSn~ra---------l~~h~RNltDe~iraia~ 224 (320)
T PF01244_consen 159 TPFGREVVREMNRLG--MLVDVSHLSEKTFWDVLEISKKPVIASHSNARA---------LCPHPRNLTDEQIRAIAE 224 (320)
T ss_dssp -HHHHHHHHHHHHHT---EEE-TTB-HHHHHHHHHH-SSEEEECCEEBTT---------TS--TTSB-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHcC--CeeeeccCCHHHHHHHHhhcCCCEEEeccChHh---------hCCCCCCCCHHHHHHHHH
Confidence 345577888888888 679999998766433111112244444322211 124589999999988743
No 115
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.35 E-value=80 Score=26.43 Aligned_cols=86 Identities=10% Similarity=0.038 Sum_probs=52.5
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEecccccccccCCCCC--CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQP--NGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQ 172 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~--~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ 172 (205)
.++.++.++++++.+++.|..+.+.+...+|.....+.. .-....++..+... -+.-.|+.+++.+
T Consensus 105 ~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~------------DT~G~~~P~~v~~ 172 (259)
T cd07939 105 RAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA------------DTVGILDPFTTYE 172 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC------------CCCCCCCHHHHHH
Confidence 345578899999999999998888887777643221100 00000111111111 1223578888988
Q ss_pred HHHHHHHH-------------------HHHHHHccccee
Q 037727 173 IVNDFRIA-------------------ARNAIEAEIKSS 192 (205)
Q Consensus 173 ii~~f~~A-------------------A~ra~~AGfDgV 192 (205)
++....+. +..|.++|+|.|
T Consensus 173 lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~v 211 (259)
T cd07939 173 LIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHV 211 (259)
T ss_pred HHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 88877653 456788999888
No 116
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=30.71 E-value=1e+02 Score=20.37 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHH
Q 037727 162 PRRLRTGEIPQIVNDF 177 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f 177 (205)
...||.+||...+..|
T Consensus 13 vd~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 13 VDELSTDDIKAYFSEY 28 (62)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5789999999999999
No 117
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=30.70 E-value=1.3e+02 Score=25.96 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHhcCC-Ce-EEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 56 QPHAILYYSQRTTEG-GF-LISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 56 t~~~~~~y~~rA~GG-Gl-Ii~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
++..+.|.+...+.| -. .+.+ +.+...--.+..|.+-..+.++++++.+|++|...++
T Consensus 179 ~~~~~~~~~~~~~~Gad~I~i~d-----p~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~il 238 (340)
T TIGR01463 179 LDFVIAYAKAMVEAGADVIAIAD-----PFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVL 238 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC-----CccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 344566776655556 43 3332 2111111112234445579999999999999876553
No 118
>PRK15447 putative protease; Provisional
Probab=30.67 E-value=1.2e+02 Score=26.08 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 54 IPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 54 ~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.|.....+||.+.+.-| -.|.+|...-+. +. . ++ .+.|++.++.+|++|.++.+
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~--R~-----~-f~---~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETVCSK--RR-----E-LK---VGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCccCCC--cc-----C-CC---HHHHHHHHHHHHHcCCEEEE
Confidence 35556789999999877 666665321111 10 1 22 35788899999999988766
No 119
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=30.35 E-value=37 Score=30.48 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHH-----------HHHHHHHHHHccccee--eccc
Q 037727 163 RRLRTGEIPQIVND-----------FRIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 163 ~~mt~~eI~~ii~~-----------f~~AA~ra~~AGfDgV--~ahG 196 (205)
..+|=+||+.+.+. ..+-|++|.++|+|+| .+||
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhG 255 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHG 255 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCC
Confidence 46788999988764 4789999999999999 6665
No 120
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.27 E-value=33 Score=28.08 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccccee
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
.+|.+|++++|..=-++--.+++-|||||
T Consensus 192 qlsadeV~eVikae~dsi~la~Qd~~d~~ 220 (252)
T KOG4654|consen 192 QLSADEVEEVIKAELDSIPLAKQDAFDGV 220 (252)
T ss_pred cccHHHHHHHHHHhccccchhhhccccCC
Confidence 58999999999999999999999999999
No 121
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=30.25 E-value=39 Score=25.70 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHH------HHHHHHHcccceeeccchhhhhhc
Q 037727 162 PRRLRTGEIPQIVNDFRI------AARNAIEAEIKSSKQLGYVLEIEC 203 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~------AA~ra~~AGfDgV~ahGyLl~qFl 203 (205)
.+.+|+++|........+ -...|+++||.+.-+||+|...++
T Consensus 19 ~~tvt~~di~~FA~~sgD~nPiH~D~~~A~~~g~~~~iahG~~~~a~~ 66 (142)
T PRK13693 19 TYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGLG 66 (142)
T ss_pred ceeeCHHHHHHHHHHhCCCCccccCHHHHHhcCCCCcEecHHHHHHHH
Confidence 467899999887766531 123567899999988998765443
No 122
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=29.76 E-value=47 Score=24.37 Aligned_cols=41 Identities=5% Similarity=-0.083 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHH------HHHHHHHcccceeeccchhhhhh
Q 037727 162 PRRLRTGEIPQIVNDFRI------AARNAIEAEIKSSKQLGYVLEIE 202 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~------AA~ra~~AGfDgV~ahGyLl~qF 202 (205)
.+.+|+++|......-.+ -...|+++||.+.-+||.|+..+
T Consensus 9 ~~~vt~~~i~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~~~ 55 (127)
T cd03453 9 TPPVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGL 55 (127)
T ss_pred eeecCHHHHHHHHHhhcCCCccccCHHHHHHcCCCCcEecHHHHHHH
Confidence 478999999887664211 22456688999998888876544
No 123
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=29.61 E-value=91 Score=21.78 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccccee
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
.+|..|+..+++.|.+....+...|-..-
T Consensus 16 ~~s~~~~~~vv~~~~~~i~~~L~~g~~V~ 44 (94)
T PRK00199 16 HLSAKDVENAVKEILEEMSDALARGDRIE 44 (94)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 58999999999999999999999886544
No 124
>PRK12313 glycogen branching enzyme; Provisional
Probab=29.29 E-value=61 Score=31.03 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHcCCeeeEe--ccccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQ--LLHAGRI 126 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~Q--L~H~Gr~ 126 (205)
.+.||++++++|+.|.++++- ++|.+..
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~ 248 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVPGHFPKD 248 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Confidence 568999999999999999987 4677654
No 125
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=29.20 E-value=2.4e+02 Score=24.02 Aligned_cols=71 Identities=10% Similarity=-0.092 Sum_probs=36.1
Q ss_pred eCCCCCCccCCCCCcH-HHHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 42 LAPLSRMRSYDYIPQP-HAILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 42 ~aPm~~~~~~~g~~t~-~~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.+|+.+.+..+|.+.. .+..+.+...+.| |+++.|.+ | ....+..++...-++.+++++. ....+++
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~Gst-----G----E~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~ 74 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGT-----G----EFFSLTPDEYAQVVRAAVEETA-GRVPVLA 74 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCC-----c----CcccCCHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 4444444444555544 3333333334455 88777663 1 1233455566666666666653 2355666
Q ss_pred eccc
Q 037727 119 QLLH 122 (205)
Q Consensus 119 QL~H 122 (205)
+..+
T Consensus 75 gv~~ 78 (289)
T cd00951 75 GAGY 78 (289)
T ss_pred ecCC
Confidence 6553
No 126
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=28.93 E-value=1.3e+02 Score=26.88 Aligned_cols=80 Identities=6% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHcCCeeeEecccccccccCC--CCCCCCCcc---------------------ccCCCCCCCCCCCCCC
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAGRISNRD--FQPNGKAPI---------------------SYSDKPLKNQPNGGFN 155 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~--~~~~g~~~~---------------------~pS~~~~~~~~~~~~~ 155 (205)
++.++.+++++.+..+.+++|+.-....-... + .. .-+.+|...
T Consensus 31 ~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal------- 97 (350)
T PRK09197 31 TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGV------KDDGQGAAVLGAIAGAKHVHEVAEHYGVPVIL------- 97 (350)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccc------cccchhhhhhhHHHHHHHHHHHHHHCCCCEEE-------
Q ss_pred CCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHccccee---ecc
Q 037727 156 AAEFTPPRRLR--TGEIPQIVNDFRIAARNAIEAEIKSS---KQL 195 (205)
Q Consensus 156 ~~~~~~~~~mt--~~eI~~ii~~f~~AA~ra~~AGfDgV---~ah 195 (205)
+.-+--+ .+.|.+.++.=.+...++.++||+.| +.|
T Consensus 98 ----HLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~ 138 (350)
T PRK09197 98 ----HTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE 138 (350)
T ss_pred ----ECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC
No 127
>PRK11702 hypothetical protein; Provisional
Probab=28.87 E-value=59 Score=24.04 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcccce
Q 037727 162 PRRLRTGEIPQIVNDFRIAARNAIEAEIKS 191 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~AA~ra~~AGfDg 191 (205)
+..++.++|+.++|+|++-+.-+..-+|+|
T Consensus 30 ~~~~~~e~~D~~vD~fIde~Ie~ngL~f~G 59 (108)
T PRK11702 30 PEGTSEEQIDATVDAFIDEVIEPNGLAFDG 59 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCceecC
Confidence 455899999999999998666665556655
No 128
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=28.48 E-value=77 Score=25.30 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHh----cCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCe
Q 037727 54 IPQPHAILYYSQRT----TEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGI 115 (205)
Q Consensus 54 ~~t~~~~~~y~~rA----~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~ 115 (205)
.+.+.+..||+.+. +.= ||||||+- |. .+...+-.+.+.++++.|-.++++..
T Consensus 43 ~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp-ve--------~~~fe~v~Yw~El~~i~dwa~~~v~s 100 (175)
T cd03131 43 TPPEHVNRFYETFDDIRDAKFDGLIVTGAP-VE--------HLPFEQVDYWEELTEILDWAKTHVTS 100 (175)
T ss_pred CCHHHHHHhccCHHHccccCCCEEEEeCCC-cc--------cCCccccchHHHHHHHHHHHHHhCcc
Confidence 35567788888773 233 99999873 21 22223445666788888888888753
No 129
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=27.61 E-value=74 Score=29.12 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=27.9
Q ss_pred ccCCHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 92 GIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 92 ~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
+-.+++.++..+++++.+.++|.+.++-|.|..
T Consensus 91 g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~ 123 (455)
T PF00232_consen 91 GKVNEEGLDFYRDLIDELLENGIEPIVTLYHFD 123 (455)
T ss_dssp SSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS-
T ss_pred cccCHhHhhhhHHHHHHHHhhccceeeeeeecc
Confidence 447899999999999999999999999999964
No 130
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.55 E-value=1.3e+02 Score=24.55 Aligned_cols=87 Identities=10% Similarity=-0.028 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHcCCeeeEecccccccccCCCCCCCCCcccc-CCC-CC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 037727 101 AWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPNGKAPISY-SDK-PL-KNQPNGGFNAAEFTPPRRLRTGEIPQIVNDF 177 (205)
Q Consensus 101 ~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~p-S~~-~~-~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 177 (205)
.+.++.+.++++|.++.+=|+-.=...... ++-+ -+. -. ...| |..++.-.+-+.+-|+++.+.+
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~~~~-------~~l~~vD~VlvMsV~P-----G~~Gq~f~~~~~~KI~~l~~~~ 160 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVEELE-------PYLDQVDMVLVMSVEP-----GFGGQKFIPEVLEKIRELRKLI 160 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GGGGT-------TTGCCSSEEEEESS-T-----TTSSB--HGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCchHHH-------HHhhhcCEEEEEEecC-----CCCcccccHHHHHHHHHHHHHH
Confidence 456788999999999988876432111111 1111 000 00 0000 1122333445566677776666
Q ss_pred HH----------------HHHHHHHccccee-eccchhhh
Q 037727 178 RI----------------AARNAIEAEIKSS-KQLGYVLE 200 (205)
Q Consensus 178 ~~----------------AA~ra~~AGfDgV-~ahGyLl~ 200 (205)
.+ .++.+.+||.|.+ +| .||+.
T Consensus 161 ~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~G-s~iF~ 199 (201)
T PF00834_consen 161 PENGLDFEIEVDGGINEENIKQLVEAGADIFVAG-SAIFK 199 (201)
T ss_dssp HHHTCGSEEEEESSESTTTHHHHHHHT--EEEES-HHHHT
T ss_pred HhcCCceEEEEECCCCHHHHHHHHHcCCCEEEEC-HHHhC
Confidence 65 5778899999998 54 34543
No 131
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=27.53 E-value=87 Score=25.65 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.4
Q ss_pred cCCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 93 IWTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 93 l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
..++..+..|+++++.++++|-++++-|++.
T Consensus 55 ~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 55 NYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred cccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3678999999999999999999999999885
No 132
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.51 E-value=51 Score=25.52 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHccccee
Q 037727 174 VNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 174 i~~f~~AA~ra~~AGfDgV 192 (205)
.+...+.|+.|+++|+|+|
T Consensus 64 ~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 4666778899999999999
No 133
>PLN02433 uroporphyrinogen decarboxylase
Probab=27.47 E-value=1.2e+02 Score=26.51 Aligned_cols=36 Identities=11% Similarity=-0.016 Sum_probs=26.8
Q ss_pred CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEe
Q 037727 71 GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQ 119 (205)
Q Consensus 71 GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~Q 119 (205)
|.|+.-++.|.++. -.+.++.+++++|++|.+.++|
T Consensus 309 g~Il~~Gc~i~~~t-------------p~eNi~a~v~av~~~~~~~~~~ 344 (345)
T PLN02433 309 GHILNLGHGVLVGT-------------PEENVAHFFDVARELRYEMIAQ 344 (345)
T ss_pred CeEEecCCCCCCCC-------------CHHHHHHHHHHHHHhChhhhcc
Confidence 77777655554331 2568899999999999998887
No 134
>COG1659 Uncharacterized protein, linocin/CFP29 homolog [Function unknown]
Probab=27.43 E-value=53 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHccccee-----------------eccchhhh
Q 037727 169 EIPQIVNDFRIAARNAIEAEIKSS-----------------KQLGYVLE 200 (205)
Q Consensus 169 eI~~ii~~f~~AA~ra~~AGfDgV-----------------~ahGyLl~ 200 (205)
+..++.++-++|--+..++||||= ..|||++-
T Consensus 146 ~p~~~~~~iV~alS~l~~~G~~gpY~LivN~dRy~~l~~e~~~hgyp~~ 194 (267)
T COG1659 146 DPREIPDVIVQALSELRLAGVDGPYSLLLNADRYTKLVSETSDHGYPIR 194 (267)
T ss_pred ccchHHHHHHHHHHHHHHcccCCceEEEEchhhhhehheecCCCCCcHH
Confidence 355678888999999999999984 78899764
No 135
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=27.40 E-value=53 Score=19.82 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=13.0
Q ss_pred HHHHHHHHccccee-eccc
Q 037727 179 IAARNAIEAEIKSS-KQLG 196 (205)
Q Consensus 179 ~AA~ra~~AGfDgV-~ahG 196 (205)
+.|.|...|||+-| ++-|
T Consensus 2 e~a~Rl~~AgF~~i~~g~g 20 (41)
T PF11590_consen 2 ETAERLRSAGFATIGSGAG 20 (41)
T ss_dssp HHHHHHHHTT-EEECTTS-
T ss_pred hHHHHHHHHhHHHhccCcc
Confidence 46889999999999 5555
No 136
>PF11419 DUF3194: Protein of unknown function (DUF3194); InterPro: IPR024502 This family of proteins has no known function however the structure has been determined. The protein consists of two alpha-helices packed on the same side of a central beta-hairpin [].; PDB: 1PU1_A.
Probab=27.24 E-value=74 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 037727 163 RRLRTGEIPQIVNDFRIAARNA 184 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f~~AA~ra 184 (205)
++||.+|+.+|.+-+.++|.--
T Consensus 4 ~kLs~~el~eI~e~a~~~~e~~ 25 (87)
T PF11419_consen 4 PKLSEEELDEISEFAAEAAEGY 25 (87)
T ss_dssp ---SHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999988643
No 137
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=27.22 E-value=47 Score=29.55 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHHccccee--eccc
Q 037727 163 RRLRTGEIPQIVNDF-----------RIAARNAIEAEIKSS--KQLG 196 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f-----------~~AA~ra~~AGfDgV--~ahG 196 (205)
..++-++|+++++.. .+-|++|+++|+|+| ++||
T Consensus 210 ~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hG 256 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHG 256 (356)
T ss_dssp TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGT
T ss_pred CCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCC
Confidence 458889999999875 688999999999999 7776
No 138
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.10 E-value=72 Score=27.05 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccccee
Q 037727 165 LRTGEIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 165 mt~~eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
-|.+|++.+.++ ++.++++|+|||
T Consensus 67 Ys~~E~~~M~~d----i~~~~~~GadGv 90 (248)
T PRK11572 67 YSDGEFAAMLED----IATVRELGFPGL 90 (248)
T ss_pred CCHHHHHHHHHH----HHHHHHcCCCEE
Confidence 478888887766 567789999999
No 139
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.85 E-value=2.6e+02 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=28.0
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
-++.+..-|++++.+|..|.-+=..|.|-|.
T Consensus 113 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 143 (288)
T TIGR00167 113 FEENIELTKKVVERAHKMGVSVEAELGTLGG 143 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 4788999999999999999999999999763
No 140
>PRK15452 putative protease; Provisional
Probab=26.83 E-value=1.9e+02 Score=26.60 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHcCCeeeE
Q 037727 100 EAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 100 ~~l~~l~~~vH~~G~~i~~ 118 (205)
+.+++.++.+|++|.++.+
T Consensus 46 edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 46 ENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 4588999999999998776
No 141
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=26.47 E-value=67 Score=26.89 Aligned_cols=22 Identities=36% Similarity=0.197 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccccee
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
.||++|+ ..|+..|.+||.|.|
T Consensus 136 ~Lt~ee~-------~~A~~i~~~aGAdFV 157 (228)
T COG0274 136 LLTDEEK-------RKACEIAIEAGADFV 157 (228)
T ss_pred ccCHHHH-------HHHHHHHHHhCCCEE
Confidence 5888887 578899999999999
No 142
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=26.36 E-value=32 Score=25.45 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHH------HHHHHHHcccceeeccchhhh
Q 037727 162 PRRLRTGEIPQIVNDFRI------AARNAIEAEIKSSKQLGYVLE 200 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~------AA~ra~~AGfDgV~ahGyLl~ 200 (205)
++.+|.++|........+ -...|+++||.+..+||.|+-
T Consensus 15 ~~tvt~~~i~~fa~~~gD~np~H~D~~~A~~~~~~~~ia~G~~~~ 59 (140)
T cd03446 15 GRTVTEADVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTL 59 (140)
T ss_pred CEEECHHHHHHHHHhhCCCcccccCHHHHccCCCCCceeccccHH
Confidence 467899998876664322 234577899999988877653
No 143
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=26.36 E-value=66 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHHcCCeeeEe--cccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQ--LLHAGR 125 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~Q--L~H~Gr 125 (205)
.+.||+|++++|+.|.++++= ++|.|.
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~ 108 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVLNHKAG 108 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccC
Confidence 567999999999999999875 488775
No 144
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=26.30 E-value=68 Score=23.40 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcccce
Q 037727 162 PRRLRTGEIPQIVNDFRIAARNAIEAEIKS 191 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~AA~ra~~AGfDg 191 (205)
+..++.++|+.++++|++ +.-+..-.|+|
T Consensus 24 ~~~~~~e~~D~~~D~fId-~Ie~~gL~~~G 52 (101)
T PF04320_consen 24 AEGTSEEQIDAFVDAFID-VIEPNGLAFGG 52 (101)
T ss_pred CCCCCHHHHHHHHHHHHH-HHHhCCCEEec
Confidence 455899999999999999 76666666655
No 145
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=26.21 E-value=6e+02 Score=24.50 Aligned_cols=151 Identities=11% Similarity=0.079 Sum_probs=90.7
Q ss_pred CCcceeCCeec--CCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhH
Q 037727 26 LTPYKMGSFNL--SHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAW 102 (205)
Q Consensus 26 f~Pi~ig~~~l--kNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l 102 (205)
-..++||++.+ -|.|....|++....| ++..++--.+.++-| -+|=+. +-+.+..+.+
T Consensus 15 Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D---~~atv~Qi~~L~~aGceiVRvt----------------vp~~~~A~al 75 (606)
T PRK00694 15 THPVRIGNLFVGSEHSIKIQSMTTTATTD---VDGTVRQICALQEWGCDIVRVT----------------VQGLKEAQAC 75 (606)
T ss_pred ceEEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHHcCCCEEEEc----------------CCCHHHHHhH
Confidence 45688888777 5899999998765433 455566677788777 655321 1356778999
Q ss_pred HHHHHHHHHcCCe--eeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHH
Q 037727 103 KPIVAEVQAKGGI--FFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRT----GEIPQIVND 176 (205)
Q Consensus 103 ~~l~~~vH~~G~~--i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~----~eI~~ii~~ 176 (205)
+.|.+...+.|+. +++-++..-+.+......-..-.+-|-.+.... ..| ...+-|. +|++.|.+.
T Consensus 76 ~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~---k~F------~~~~YtDeeY~~el~~I~e~ 146 (606)
T PRK00694 76 EHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKR---NMF------TGKIYTDEQYAHSLLRLEEK 146 (606)
T ss_pred HHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCcc---ccc------cccccchhhhhhhhhhHHHH
Confidence 9999999998864 455554333322111000000012221111100 001 1123333 568889999
Q ss_pred HHHHHHHHHHccccee--eccchhhhhhcC
Q 037727 177 FRIAARNAIEAEIKSS--KQLGYVLEIECS 204 (205)
Q Consensus 177 f~~AA~ra~~AGfDgV--~ahGyLl~qFlS 204 (205)
|..-.+.|++.|--.= .-||.|=..+++
T Consensus 147 ~~~vV~~ake~~~~IRIGvN~GSL~~~i~~ 176 (606)
T PRK00694 147 FSPLVEKCKRLGKAMRIGVNHGSLSERVMQ 176 (606)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 9999999999987655 667888666654
No 146
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=26.11 E-value=1.4e+02 Score=26.23 Aligned_cols=57 Identities=9% Similarity=-0.033 Sum_probs=38.4
Q ss_pred ceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceecc-CCCCCCCCCccC
Q 037727 29 YKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSE-TGRGYKHTPGIW 94 (205)
Q Consensus 29 i~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~-~g~~~~~~~~l~ 94 (205)
.++.++++||=+++++-.. +. .-.++..++.-| |.|+++.+...| .|...|+...+.
T Consensus 4 ~~~~Gl~f~NPl~lAaG~~-----~~----~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~ 62 (310)
T COG0167 4 TEILGLKFPNPLGLAAGFD-----GK----NGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLP 62 (310)
T ss_pred eeecceecCCCCeEcccCC-----cc----CHHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEec
Confidence 3488999999999866332 11 124677778888 999998877663 465555555554
No 147
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=26.08 E-value=2.8e+02 Score=20.87 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=24.7
Q ss_pred CCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 87 YKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 87 ~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
.+..++|.. .-|+++++++|+.|.++++=+.+.
T Consensus 35 ~~~hp~L~~----Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 35 GPRHPGLKR----DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CcCCCCCCc----CHHHHHHHHHHHCCCEEEEEEeee
Confidence 334555542 579999999999999988777654
No 148
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=25.70 E-value=1.4e+02 Score=26.53 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 55 PQPHAILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 55 ~t~~~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
.++..++|.....+.| |+|++. . +.+...--.+..|..=..|.++++++.+++.|.++++
T Consensus 212 ~td~~i~~~~~~ieaGa~~~i~i~-~---~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~g~~~il 273 (378)
T cd03308 212 VTPLMIKMGTATAPAPYPGPVFTP-I---PLHLPPFLRPKQFEKFYWPSFKKVVEGLAARGQRIFL 273 (378)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEE-e---cccccCccCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3455677777666665 523331 1 2211111112234445578999999999999887665
No 149
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=25.45 E-value=1.5e+02 Score=25.82 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhcC-C-CeEEE-ecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCC
Q 037727 56 QPHAILYYSQRTTE-G-GFLIS-EASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGG 114 (205)
Q Consensus 56 t~~~~~~y~~rA~G-G-GlIi~-~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~ 114 (205)
++..++|++...+. | -+|.+ +..+- ..+.. -.+..|.+=..|.+|++++.+|+.+.
T Consensus 154 td~~i~y~~~qiea~Gad~I~i~Ddwa~-~~~~~--LSpe~f~efv~P~~krIi~~ik~~~g 212 (321)
T cd03309 154 TDAKLKLYERRIKHLEPDLLVYHDDLGS-QKGSF--ISPATFREFILPRMQRIFDFLRSNTS 212 (321)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCcc-ccCCc--cCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45567888777766 7 44443 22111 00100 01122334457899999999999853
No 150
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=25.39 E-value=27 Score=25.12 Aligned_cols=41 Identities=7% Similarity=-0.015 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHHH------HHHHHHcccceeeccchhhhhh
Q 037727 162 PRRLRTGEIPQIVNDFRIA------ARNAIEAEIKSSKQLGYVLEIE 202 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~A------A~ra~~AGfDgV~ahGyLl~qF 202 (205)
.+.+|.++|......+.+. ...|+.+||.++-+||.++..+
T Consensus 10 ~~tv~~~~~~~fa~~~gd~npiH~D~~~A~~~g~~~~i~~g~~~~~~ 56 (128)
T cd03449 10 TRTITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASL 56 (128)
T ss_pred EEEEcHHHHHHHHHHhCCCCCccCCHHHHhhCCCCCceecHHHHHHH
Confidence 4678888888776655321 3456789999997787766544
No 151
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=25.31 E-value=61 Score=28.41 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHccccee
Q 037727 174 VNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 174 i~~f~~AA~ra~~AGfDgV 192 (205)
++++.+.|+.|.++|.|||
T Consensus 172 ~~di~~iA~~~~~~g~Dgl 190 (310)
T COG0167 172 ITDIDEIAKAAEEAGADGL 190 (310)
T ss_pred HHHHHHHHHHHHHcCCcEE
Confidence 3455677889999999999
No 152
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=25.06 E-value=6.3e+02 Score=24.41 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=89.6
Q ss_pred CcceeCCeec--CCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHH
Q 037727 27 TPYKMGSFNL--SHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWK 103 (205)
Q Consensus 27 ~Pi~ig~~~l--kNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~ 103 (205)
..++||++.+ -|.|....|++....| ++..++--.+.++-| -+|=+. +-+.+..+.++
T Consensus 12 r~V~vG~v~iGg~~PI~vQSMt~t~T~D---~~atv~Qi~~l~~aGceiVRvt----------------v~~~~~a~~l~ 72 (611)
T PRK02048 12 SVVNIGATPLGGPNPIRIQSMTNTSTMD---TEACVAQAKRIIDAGGEYVRLT----------------TQGVREAENLM 72 (611)
T ss_pred eEEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHHcCCCEEEEc----------------CCCHHHHHhHH
Confidence 4678888776 5899999998765433 456666777888777 555321 13567789999
Q ss_pred HHHHHHHHcCCe--eeEecccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHH
Q 037727 104 PIVAEVQAKGGI--FFCQLLHAGRISNRDFQPNGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRT----GEIPQIVNDF 177 (205)
Q Consensus 104 ~l~~~vH~~G~~--i~~QL~H~Gr~~~~~~~~~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~----~eI~~ii~~f 177 (205)
.+.+.+.+.|+. +++-++..-+.+......-..-.+-|-.+..... .| ...+-|. +|++.|.+.|
T Consensus 73 ~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k---~f------~~~~Ytdeey~~el~~i~e~~ 143 (611)
T PRK02048 73 NINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGR---TF------KKLEYTDEEYAQEIQKIRDRF 143 (611)
T ss_pred HHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcCCCccc---cc------cccccchhhhhhhhhhHHHHH
Confidence 999999998864 5555544333322110000000122211110000 00 0122233 4577888999
Q ss_pred HHHHHHHHHccccee--eccchhhhhhcC
Q 037727 178 RIAARNAIEAEIKSS--KQLGYVLEIECS 204 (205)
Q Consensus 178 ~~AA~ra~~AGfDgV--~ahGyLl~qFlS 204 (205)
..-.+.|++.|--.= .-||.|=..+++
T Consensus 144 ~~~v~~ak~~~~~iRIGvN~GSL~~~i~~ 172 (611)
T PRK02048 144 VPFLNICKENHTAIRIGVNHGSLSDRIMS 172 (611)
T ss_pred HHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 999999999887654 667888666654
No 153
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=25.00 E-value=70 Score=30.46 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHcCCeeeEec--cccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQL--LHAG 124 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL--~H~G 124 (205)
++.||++++++|+.|.++++-+ +|.+
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 255 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNHTY 255 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCcc
Confidence 5789999999999999999865 6665
No 154
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=24.78 E-value=2.7e+02 Score=25.72 Aligned_cols=43 Identities=12% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHH
Q 037727 61 LYYSQRTTEGGFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQ 110 (205)
Q Consensus 61 ~~y~~rA~GGGlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH 110 (205)
....-.++.||+||+..| ..|+..|..+ .+-||-|-.+...+-
T Consensus 76 hll~~~~~~~G~iiVDsT---RrGK~~PDal----SkTiPIWcaVlN~~~ 118 (451)
T PF04179_consen 76 HLLPLIAEHGGCIIVDST---RRGKRMPDAL----SKTIPIWCAVLNRAL 118 (451)
T ss_pred HHHHHhhcCCcEEEEecc---cCCCCCChhh----hccccHHHHHHHHHH
Confidence 334444555689998775 5566665443 234888888877764
No 155
>PLN02826 dihydroorotate dehydrogenase
Probab=24.37 E-value=1.4e+02 Score=27.17 Aligned_cols=51 Identities=16% Similarity=0.019 Sum_probs=32.3
Q ss_pred cceeCCeecCCceEeCCCCCCccCCCCCcHHHHHHHHHHhcCC-CeEEEecceecc-CCCCCC
Q 037727 28 PYKMGSFNLSHRIVLAPLSRMRSYDYIPQPHAILYYSQRTTEG-GFLISEASVVSE-TGRGYK 88 (205)
Q Consensus 28 Pi~ig~~~lkNRiv~aPm~~~~~~~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~-~g~~~~ 88 (205)
+.++.+++++|.|..++=.. .+ .+ .+.....-| |.|.++.+...| .|...|
T Consensus 75 ~~~~~Gl~f~NPvglAAG~d---kn----~~---~~~~l~~lGfG~vevgTVT~~pq~GNp~P 127 (409)
T PLN02826 75 GVEVWGRTFSNPIGLAAGFD---KN----AE---AVEGLLGLGFGFVEIGSVTPLPQPGNPKP 127 (409)
T ss_pred ceEECCEECCCCCEECcccC---CC----HH---HHHHHHhcCCCeEEeCCccCCCCCCCCCC
Confidence 66888999999999987421 11 12 233333348 999998876543 444433
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.35 E-value=96 Score=27.32 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=52.0
Q ss_pred HHhHHHHHHHHHHcCCeeeEecccccccccCCCCCC--CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQPN--GKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQIVND 176 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~--g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 176 (205)
.+..++.++.+++.|..+.++|..+++.....+... -....++..+... -+.-.|+.+++.+++..
T Consensus 114 ~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~------------DT~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 114 ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV------------DSAGALLPEDVRDRVRA 181 (337)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC------------CCCCCCCHHHHHHHHHH
Confidence 456899999999999999999998876432211000 0001122211111 12236888999988888
Q ss_pred HHHHH---------------------HHHHHccccee
Q 037727 177 FRIAA---------------------RNAIEAEIKSS 192 (205)
Q Consensus 177 f~~AA---------------------~ra~~AGfDgV 192 (205)
..+.. ..|.+||+|.|
T Consensus 182 l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 182 LRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred HHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence 87653 56788999988
No 157
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=24.23 E-value=63 Score=18.11 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=9.7
Q ss_pred HHHHHHHccccee
Q 037727 180 AARNAIEAEIKSS 192 (205)
Q Consensus 180 AA~ra~~AGfDgV 192 (205)
+-+.+..+|.|||
T Consensus 12 ~~~~~l~~GVDgI 24 (30)
T PF13653_consen 12 SWRELLDLGVDGI 24 (30)
T ss_dssp HHHHHHHHT-SEE
T ss_pred HHHHHHHcCCCEe
Confidence 4477889999998
No 158
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=2.4e+02 Score=26.38 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 56 QPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 56 t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
.+++.+|-+..|.=| --++.-++.|...- .-+-+..+++..++++|..++||.|+.+-++.+
T Consensus 182 ~qR~kDYAR~laSiGINg~v~NNVNvk~~e------~~lit~~fl~k~aklAdiFR~YGIK~yLsinfa 244 (684)
T COG3661 182 DQRMKDYARALASIGINGTVLNNVNVKKAE------SYLITAPFLAKAAKLADIFRPYGIKVYLSINFA 244 (684)
T ss_pred hHHHHHHHHHHhhcCcceEEecccccchhh------hheechHhHHHHHHHHHHhhhccceEEEEeccC
Confidence 378888888888766 44445565554321 123567899999999999999999999888764
No 159
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=23.84 E-value=82 Score=28.03 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH------------HHHHHHHHHccccee
Q 037727 167 TGEIPQIVNDF------------RIAARNAIEAEIKSS 192 (205)
Q Consensus 167 ~~eI~~ii~~f------------~~AA~ra~~AGfDgV 192 (205)
.+.|++|.+.| .+.|+.+.+||+|+|
T Consensus 138 i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 138 VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIV 175 (343)
T ss_pred HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEE
Confidence 44566666666 467889999999999
No 160
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=23.79 E-value=66 Score=27.57 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHccccee-eccchhhhhhc
Q 037727 162 PRRLRTGEIPQIVNDFRIAARNAIEAEIKSS-KQLGYVLEIEC 203 (205)
Q Consensus 162 ~~~mt~~eI~~ii~~f~~AA~ra~~AGfDgV-~ahGyLl~qFl 203 (205)
|.-|-.+||-.-.| +.|+.-|.+||...| .||||-|....
T Consensus 219 PEViIvDEIGt~~d--~~A~~ta~~~GVkli~TaHG~~iedl~ 259 (308)
T COG3854 219 PEVIIVDEIGTEED--ALAILTALHAGVKLITTAHGNGIEDLI 259 (308)
T ss_pred CcEEEEeccccHHH--HHHHHHHHhcCcEEEEeeccccHHHhh
Confidence 34444555544333 578899999999999 99999876654
No 161
>PRK07475 hypothetical protein; Provisional
Probab=23.71 E-value=67 Score=26.84 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHccccee
Q 037727 172 QIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 172 ~ii~~f~~AA~ra~~AGfDgV 192 (205)
...+.|.++|++..++|.|+|
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I 82 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAI 82 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEE
Confidence 578999999999999999999
No 162
>PLN02849 beta-glucosidase
Probab=23.65 E-value=1.3e+02 Score=28.08 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 94 WTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 94 ~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
.+.+-++..++++++++++|...+|=|.|.
T Consensus 113 vN~~gl~fY~~lid~l~~~GI~P~VTL~H~ 142 (503)
T PLN02849 113 VNPKGLQFYKNFIQELVKHGIEPHVTLFHY 142 (503)
T ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeecCC
Confidence 589999999999999999999999999995
No 163
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.60 E-value=1.4e+02 Score=27.57 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 94 WTKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 94 ~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
.+.+-++..++|++.+.++|...+|=|.|..
T Consensus 87 ~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 117 (467)
T TIGR01233 87 VNEKGVEFYHKLFAECHKRHVEPFVTLHHFD 117 (467)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEeccCCC
Confidence 6889999999999999999999999999953
No 164
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.52 E-value=1e+02 Score=26.48 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 94 WTKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 94 ~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
..++.++.-+++++.+|++|..+-..+.|-|
T Consensus 109 ~~~eni~~t~~v~~~a~~~gv~veaE~ghlG 139 (281)
T PRK06806 109 PLEENIQKTKEIVELAKQYGATVEAEIGRVG 139 (281)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeeEC
Confidence 3578899999999999999999999999987
No 165
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=23.36 E-value=1.5e+02 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 97 EQVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 97 ~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
+.++.+++.++++++.|+-+++=|.|.|.
T Consensus 166 d~~~~~~~~v~~lr~~~~D~II~l~H~G~ 194 (281)
T cd07409 166 DEIEAAQKEADKLKAQGVNKIIALSHSGY 194 (281)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeccCc
Confidence 34678999999999999999999999985
No 166
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.09 E-value=91 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.105 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHccccee-eccch
Q 037727 163 RRLRTGEIPQIVNDFRIAARNAIEAEIKSS-KQLGY 197 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgV-~ahGy 197 (205)
-.||.+|| .++++.|.++|+|.| ..-||
T Consensus 131 ~~L~~e~i-------~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 131 CLLTDEEK-------VKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred CcCCHHHH-------HHHHHHHHHhCCCEEEcCCCC
Confidence 35888887 466778999999999 44444
No 167
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=23.07 E-value=1.4e+02 Score=27.56 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=28.9
Q ss_pred CCHHHHHhHHHHHHHHHHcCCeeeEeccccc
Q 037727 94 WTKEQVEAWKPIVAEVQAKGGIFFCQLLHAG 124 (205)
Q Consensus 94 ~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~G 124 (205)
.+.+-++..++|++.+.++|...+|=|.|..
T Consensus 88 vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~d 118 (469)
T PRK13511 88 VNPKGVEYYHRLFAECHKRHVEPFVTLHHFD 118 (469)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 5889999999999999999999999999964
No 168
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.00 E-value=4.2e+02 Score=21.84 Aligned_cols=79 Identities=8% Similarity=0.161 Sum_probs=47.7
Q ss_pred ceeCCeecCCceEeCCCCCCccCCC-CCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHH
Q 037727 29 YKMGSFNLSHRIVLAPLSRMRSYDY-IPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIV 106 (205)
Q Consensus 29 i~ig~~~lkNRiv~aPm~~~~~~~g-~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~ 106 (205)
+.+=-+.-|||++.--.-..-+.+. .+.++.+ |......+- ++|++-+ +|+|...| +++.+.--+++.
T Consensus 119 f~vl~Ld~~n~li~~~~i~~Gt~~~~~v~pReI-~~~Al~~~A~~vIlaHN---HPSG~~~P------S~~Di~~T~~l~ 188 (218)
T TIGR00608 119 FMVLFLDRKNRLIAKEVVFIGTVNHVPVHPREI-FKEALKLSASALILAHN---HPSGEPSP------SQEDILITERLR 188 (218)
T ss_pred EEEEEECCCCcEEEEEEeecCCCCeEEEcHHHH-HHHHHHhhCCeEEEEee---cCCCCCCC------CHHHHHHHHHHH
Confidence 3344567789988755332111122 2334433 444455556 7887766 57777665 566677778888
Q ss_pred HHHHHcCCeee
Q 037727 107 AEVQAKGGIFF 117 (205)
Q Consensus 107 ~~vH~~G~~i~ 117 (205)
++..--|..++
T Consensus 189 ~a~~~lgI~ll 199 (218)
T TIGR00608 189 KAAELLGIELL 199 (218)
T ss_pred HHHHhCCCEEe
Confidence 88888776544
No 169
>PLN02814 beta-glucosidase
Probab=22.82 E-value=1.3e+02 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=28.4
Q ss_pred CCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 94 WTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 94 ~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
.+.+-++..++|++++.++|.+.+|=|.|.
T Consensus 111 ~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~ 140 (504)
T PLN02814 111 INPKGLLFYKNLIKELRSHGIEPHVTLYHY 140 (504)
T ss_pred CCHHHHHHHHHHHHHHHHcCCceEEEecCC
Confidence 589999999999999999999999999995
No 170
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=22.75 E-value=72 Score=24.58 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=13.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 037727 160 TPPRRLRTGEIPQIVNDFRIAA 181 (205)
Q Consensus 160 ~~~~~mt~~eI~~ii~~f~~AA 181 (205)
+.|..||++||+.+|+..+...
T Consensus 86 yLP~~lseeEi~~~v~~~i~e~ 107 (143)
T PF09424_consen 86 YLPKQLSEEEIEAIVEEAIAEL 107 (143)
T ss_dssp GS-----HHHHHHHHHHHHHHT
T ss_pred hCcCCCCHHHHHHHHHHHHHHh
Confidence 4477999999999998876653
No 171
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.56 E-value=4.1e+02 Score=21.74 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHcCCeeeEecc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQLL 121 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL~ 121 (205)
.+..++.+..+|+.|.|+++-+.
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sig 72 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSIL 72 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEEC
Confidence 34566777788999999988764
No 172
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=22.33 E-value=1.5e+02 Score=20.73 Aligned_cols=27 Identities=0% Similarity=0.058 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHccc
Q 037727 163 RRLRTGEIPQIVNDFRIAARNAIEAEI 189 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f~~AA~ra~~AGf 189 (205)
..||..|+..+++.|.+.-..+...|=
T Consensus 14 ~~~s~~~~~~~v~~~~~~i~~~L~~~~ 40 (90)
T PRK10664 14 ADISKAAAGRALDAIIASVTESLKEGD 40 (90)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 358999999999999999998887764
No 173
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=22.29 E-value=95 Score=26.29 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
+......++..+++.|+++=|||.|.|.
T Consensus 12 ~~~~a~~lI~~LR~~g~~LPIEI~~~~~ 39 (271)
T PF11051_consen 12 YLWLALRLIRVLRRLGNTLPIEIIYPGD 39 (271)
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 3444557778888899999999999873
No 174
>PRK03906 mannonate dehydratase; Provisional
Probab=22.11 E-value=3.9e+02 Score=24.16 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeE
Q 037727 55 PQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFC 118 (205)
Q Consensus 55 ~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~ 118 (205)
+-+...++=+.....| -+-++|+.+|+.+-+.. . -.-|++|+.+++....+-+.|.++++
T Consensus 41 ~~~~i~~~~~~ie~~Gl~~~vvEs~pv~~~Ik~g--~--~~rd~~ie~y~~sirnlg~~GI~~ic 101 (385)
T PRK03906 41 PVEEILARKAEIEAAGLEWSVVESVPVHEDIKTG--T--PNRDRYIENYKQTLRNLAAAGIKVVC 101 (385)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcC--C--CCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 3345555444455567 77788999998543221 1 14688999999999999999998765
No 175
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=22.11 E-value=1.7e+02 Score=25.56 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHHh----cCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCe
Q 037727 53 YIPQPHAILYYSQRT----TEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGI 115 (205)
Q Consensus 53 g~~t~~~~~~y~~rA----~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~ 115 (205)
..+.+.+..||+.+. ..= |+||||+- ++ .+...+....+.++++.+-+.+++..
T Consensus 79 ~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp-~e--------~~~fedv~YW~El~~i~~w~~~~~~s 137 (302)
T PRK05368 79 NTPAEHLENFYCTFEDIKDEKFDGLIITGAP-VE--------QLPFEDVDYWDELKEILDWAKTHVTS 137 (302)
T ss_pred CCCHHHHHHhccCHHHhccCCCCEEEEcCCC-CC--------CccCCCCchHHHHHHHHHHHHHcCCC
Confidence 345677788888773 344 99999873 11 11122334466788888888888654
No 176
>cd01095 Nitrilotriacetate_monoxgenase nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.
Probab=22.06 E-value=76 Score=28.17 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHccccee
Q 037727 174 VNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 174 i~~f~~AA~ra~~AGfDgV 192 (205)
++.+++.|+.|.++|||+|
T Consensus 29 ~~~~~~~A~~AE~~GfD~~ 47 (358)
T cd01095 29 FDHYVRLARTAERAKFDAV 47 (358)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 5677888999999999999
No 177
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=21.98 E-value=3.6e+02 Score=22.88 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcccceeeccchh
Q 037727 168 GEIPQIVNDFRIAARNAIEAEIKSSKQLGYV 198 (205)
Q Consensus 168 ~eI~~ii~~f~~AA~ra~~AGfDgV~ahGyL 198 (205)
.||-..+..|++++. ...|+|+|-.|+|+
T Consensus 96 ~DIpnTv~~~a~a~~--~~~g~D~vTvh~~~ 124 (261)
T TIGR02127 96 GDIGSTASAYAKAWL--GHLHADALTVSPYL 124 (261)
T ss_pred cChHHHHHHHHHHHH--hhcCCCEEEECCcC
Confidence 357777777777744 35778888555554
No 178
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=21.79 E-value=64 Score=29.37 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037727 160 TPPRRLRTGEIPQIVNDFRIAARNAIE 186 (205)
Q Consensus 160 ~~~~~mt~~eI~~ii~~f~~AA~ra~~ 186 (205)
.+|--+|++||++.++.+.++..++..
T Consensus 375 ~PpL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 375 LPPLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 457789999999999999999887654
No 179
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=21.75 E-value=3.5e+02 Score=24.20 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHHHHhcCC-CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEecc
Q 037727 52 DYIPQPHAILYYSQRTTEG-GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQLL 121 (205)
Q Consensus 52 ~g~~t~~~~~~y~~rA~GG-GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~QL~ 121 (205)
+..+-+..++|.+..++-| -.|.|+-..... ++......+++|+..+++.|-++++-++
T Consensus 11 ~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~-----------~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 11 NRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEE-----------DAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred CCCcchhHHHHHHHHHHcCccceeeecccCCc-----------hHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 5567778899999999999 899886543321 2335788999999999999999998765
No 180
>PLN02960 alpha-amylase
Probab=21.72 E-value=96 Score=31.22 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHHcCCeeeEec--cccccc
Q 037727 99 VEAWKPIVAEVQAKGGIFFCQL--LHAGRI 126 (205)
Q Consensus 99 i~~l~~l~~~vH~~G~~i~~QL--~H~Gr~ 126 (205)
.+.||++++++|+.|.++++-+ +|.|..
T Consensus 465 p~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 465 PDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 5689999999999999999987 677764
No 181
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=21.67 E-value=1.6e+02 Score=20.00 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccccee
Q 037727 165 LRTGEIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 165 mt~~eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
+|..|+..++++|.+.-..+...|-..-
T Consensus 16 ~s~~~v~~vl~~~~~~i~~~L~~g~~V~ 43 (90)
T PF00216_consen 16 LSKKDVEAVLDALFDVIKEALKEGESVK 43 (90)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 7999999999999999999998887644
No 182
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.32 E-value=3.7e+02 Score=22.88 Aligned_cols=69 Identities=7% Similarity=-0.138 Sum_probs=33.4
Q ss_pred CCCCCCccCCCCCcHH-HHHHHHHHhcCC--CeEEEecceeccCCCCCCCCCccCCHHHHHhHHHHHHHHHHcCCeeeEe
Q 037727 43 APLSRMRSYDYIPQPH-AILYYSQRTTEG--GFLISEASVVSETGRGYKHTPGIWTKEQVEAWKPIVAEVQAKGGIFFCQ 119 (205)
Q Consensus 43 aPm~~~~~~~g~~t~~-~~~~y~~rA~GG--GlIi~~~~~V~~~g~~~~~~~~l~~d~~i~~l~~l~~~vH~~G~~i~~Q 119 (205)
+|+.+-+..+|..... +..+.+.....| |+++.|.+ | ....+..++...-++.+++.+. ....++++
T Consensus 11 ~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~Gst-----G----E~~~Lt~eEr~~v~~~~~~~~~-g~~pvi~g 80 (296)
T TIGR03249 11 SFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGT-----G----EFFSLTPAEYEQVVEIAVSTAK-GKVPVYTG 80 (296)
T ss_pred EeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCC-----c----CcccCCHHHHHHHHHHHHHHhC-CCCcEEEe
Confidence 4444444455655543 333333333455 88877664 1 1233445555555555555442 22455666
Q ss_pred cc
Q 037727 120 LL 121 (205)
Q Consensus 120 L~ 121 (205)
..
T Consensus 81 v~ 82 (296)
T TIGR03249 81 VG 82 (296)
T ss_pred cC
Confidence 54
No 183
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=21.28 E-value=1.7e+02 Score=20.56 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccccee-eccch
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIKSS-KQLGY 197 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgV-~ahGy 197 (205)
.+|..|+..+++.|.+....+...|-..- .+-|+
T Consensus 17 ~~s~~~v~~vl~~~~~~i~~~L~~g~~V~l~gfG~ 51 (99)
T PRK00285 17 GLSKREAKELVELFFEEIRDALENGEQVKLSGFGN 51 (99)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEE
Confidence 58999999999999999999999987644 44444
No 184
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=21.24 E-value=1.5e+02 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccccee
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIKSS 192 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgV 192 (205)
.+|.+||..+++.|.+....+...|+-.-
T Consensus 44 ~~t~~di~~vl~~~~~~~~~~l~~G~sV~ 72 (124)
T PF14848_consen 44 TLTRADIEAVLNALKDEMIEALMNGYSVN 72 (124)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 68999999999999999999999998654
No 185
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.04 E-value=89 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHccccee-eccch
Q 037727 176 DFRIAARNAIEAEIKSS-KQLGY 197 (205)
Q Consensus 176 ~f~~AA~ra~~AGfDgV-~ahGy 197 (205)
....+++.|.++|.|.| ..-||
T Consensus 132 ~i~~a~ria~e~GaD~IKTsTG~ 154 (203)
T cd00959 132 EIIKACEIAIEAGADFIKTSTGF 154 (203)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCC
Confidence 45677899999999999 55555
No 186
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=20.72 E-value=1.4e+02 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-Hccccee
Q 037727 163 RRLRTGEIPQIVNDFRIAARNAI-EAEIKSS 192 (205)
Q Consensus 163 ~~mt~~eI~~ii~~f~~AA~ra~-~AGfDgV 192 (205)
..++.++++++.++-+..+...+ +||.|.|
T Consensus 24 g~~~~~~l~~~~~~ai~~~v~~Q~~~Gldii 54 (332)
T cd03311 24 GEISAEELREAEDDAIADAVKDQEEAGLDVV 54 (332)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46899999999999998887776 6999999
No 187
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=20.67 E-value=2e+02 Score=20.57 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcc
Q 037727 160 TPPRRLRTGEIPQIVNDFRIAARNAIEAE 188 (205)
Q Consensus 160 ~~~~~mt~~eI~~ii~~f~~AA~ra~~AG 188 (205)
..|..|+.++.+++...=+..|...+++|
T Consensus 9 ~~P~~~~~~~~~~i~a~Eka~a~eLq~~G 37 (90)
T TIGR03221 9 NLPVDMPAEKAAAIKAREKAYAQELQREG 37 (90)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 34788999999999988888888888777
No 188
>PRK03705 glycogen debranching enzyme; Provisional
Probab=20.60 E-value=97 Score=30.03 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHHcCCeeeEec--ccccc
Q 037727 98 QVEAWKPIVAEVQAKGGIFFCQL--LHAGR 125 (205)
Q Consensus 98 ~i~~l~~l~~~vH~~G~~i~~QL--~H~Gr 125 (205)
.+..||+|++++|+.|.++++-+ +|.+.
T Consensus 240 ~~~efk~LV~~~H~~GI~VIlDvV~NHt~~ 269 (658)
T PRK03705 240 ALDEFRDAVKALHKAGIEVILDVVFNHSAE 269 (658)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEcccCccC
Confidence 46789999999999999999875 67764
No 189
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.36 E-value=1.4e+02 Score=25.77 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=28.1
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEecccccc
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAGR 125 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr 125 (205)
-++.+..-|++++.+|++|.-+=.+|.|-|.
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 4688999999999999999999999999763
No 190
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=20.34 E-value=1.6e+02 Score=19.29 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q 037727 169 EIPQIVNDFRIAARNAIEAE 188 (205)
Q Consensus 169 eI~~ii~~f~~AA~ra~~AG 188 (205)
-+++=.+.|..||..|+++|
T Consensus 3 ~L~~R~~~yk~Aa~~AK~~g 22 (59)
T smart00685 3 LLQQRQEQYKQAALQAKRAG 22 (59)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 35666789999999999987
No 191
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.32 E-value=1.5e+02 Score=26.30 Aligned_cols=86 Identities=14% Similarity=0.006 Sum_probs=51.7
Q ss_pred CHHHHHhHHHHHHHHHHcCCeeeEecccccccccCCCCC--CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 037727 95 TKEQVEAWKPIVAEVQAKGGIFFCQLLHAGRISNRDFQP--NGKAPISYSDKPLKNQPNGGFNAAEFTPPRRLRTGEIPQ 172 (205)
Q Consensus 95 ~d~~i~~l~~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~--~g~~~~~pS~~~~~~~~~~~~~~~~~~~~~~mt~~eI~~ 172 (205)
.++.++..++.++.++++|..+.+.+..++|.....+.. .-....++..+... .+.--|+.+++.+
T Consensus 108 ~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~------------DT~G~~~P~~v~~ 175 (365)
T TIGR02660 108 RAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA------------DTVGILDPFSTYE 175 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc------------ccCCCCCHHHHHH
Confidence 355678888999999999988887777666532111000 00000112111111 1234578888988
Q ss_pred HHHHHHHH-------------------HHHHHHccccee
Q 037727 173 IVNDFRIA-------------------ARNAIEAEIKSS 192 (205)
Q Consensus 173 ii~~f~~A-------------------A~ra~~AGfDgV 192 (205)
++..+.+. +.-|.+||+|.|
T Consensus 176 lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 176 LVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHV 214 (365)
T ss_pred HHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 88887653 356788999988
No 192
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=20.29 E-value=1.8e+02 Score=20.30 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcccc
Q 037727 164 RLRTGEIPQIVNDFRIAARNAIEAEIK 190 (205)
Q Consensus 164 ~mt~~eI~~ii~~f~~AA~ra~~AGfD 190 (205)
.+|..|++.+++.|.+.-..+...|=.
T Consensus 15 ~~s~~~~~~~v~~~~~~i~~~L~~g~~ 41 (90)
T PRK10753 15 ELSKTQAKAALESTLAAITESLKEGDA 41 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 589999999999999999998887744
No 193
>PLN02998 beta-glucosidase
Probab=20.20 E-value=1.5e+02 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=28.5
Q ss_pred CCHHHHHhHHHHHHHHHHcCCeeeEecccc
Q 037727 94 WTKEQVEAWKPIVAEVQAKGGIFFCQLLHA 123 (205)
Q Consensus 94 ~~d~~i~~l~~l~~~vH~~G~~i~~QL~H~ 123 (205)
.+.+-++..+++++++.++|...+|=|.|.
T Consensus 116 vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~ 145 (497)
T PLN02998 116 INPKGLQYYNNLIDELITHGIQPHVTLHHF 145 (497)
T ss_pred cCHHHHHHHHHHHHHHHHcCCceEEEecCC
Confidence 689999999999999999999999999996
Done!