BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037731
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YUD|A Chain A, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|B Chain B, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|C Chain C, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|D Chain D, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|E Chain E, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|F Chain F, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|G Chain G, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|H Chain H, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|I Chain I, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|J Chain J, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12
Length = 170
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 8 DGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLV 67
+G++ LG DL ++PQ+ VP FGS D +SLV
Sbjct: 89 EGELTTAQLGLDLAAGERPQFLVPKGCIFGSAXNQD-------------------GFSLV 129
Query: 68 GCTCAPAFQFEDFELAKRSDLVSSFPNHAPLISLLTFPE 106
GC +P F F+DFEL + L++ +P H ++ L+ PE
Sbjct: 130 GCXVSPGFTFDDFELFSQEALLAXYPQHKAVVQKLSRPE 168
>pdb|3M3I|A Chain A, Hypothetical Protein From Leishmania Major
pdb|3M3I|B Chain B, Hypothetical Protein From Leishmania Major
pdb|3M3I|C Chain C, Hypothetical Protein From Leishmania Major
pdb|3M3I|D Chain D, Hypothetical Protein From Leishmania Major
pdb|3M3I|E Chain E, Hypothetical Protein From Leishmania Major
pdb|3M3I|F Chain F, Hypothetical Protein From Leishmania Major
pdb|3M3I|G Chain G, Hypothetical Protein From Leishmania Major
pdb|3M3I|H Chain H, Hypothetical Protein From Leishmania Major
Length = 225
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 12 KLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTC 71
+ +G + + QYTVP FGS ++ DGA D ++ YSLV C
Sbjct: 132 RRVLVGARVERGELLQYTVPGGAIFGS------SVAADGA-------DGQAGYSLVSCIV 178
Query: 72 APAFQFEDFELAKRSDLVSSFPNHAPLISLLTF 104
+P F + DFE+ ++ L+ +P H +I + +
Sbjct: 179 SPGFDYRDFEIFTQAQLMELYPQHEAVIKQMAY 211
>pdb|3LOI|A Chain A, Crystal Structures Of Cupin Superfamily Bbduf985 From
Branch Belcheri Tsingtauense In The Apo And Gdp-Bound
Forms
pdb|3LZZ|A Chain A, Crystal Structures Of Cupin Superfamily Bbduf985 From
Branch Belcheri Tsingtauense In Apo And Gdp-Bound Forms
pdb|3LZZ|B Chain B, Crystal Structures Of Cupin Superfamily Bbduf985 From
Branch Belcheri Tsingtauense In Apo And Gdp-Bound Forms
Length = 172
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 8 DGKIKLTCLGNDLGN-NQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSL 66
DG + LGN L + + Q VP VWF DG Y L
Sbjct: 93 DGSYSCSILGNPLEHPEARHQVVVPRRVWFAQ--------EVDG-------------YCL 131
Query: 67 VGCTCAPAFQFEDFELAKRSDLVSSFPNHAPLISLLT 103
AP F F+DF L KR +L+ +P H +I T
Sbjct: 132 ASVLVAPGFDFKDFSLGKREELIKEYPQHRDVIMRCT 168
>pdb|1ZNP|A Chain A, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55.
pdb|1ZNP|B Chain B, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55.
pdb|1ZNP|C Chain C, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55.
pdb|1ZNP|D Chain D, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55.
pdb|1ZNP|E Chain E, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55.
pdb|1ZNP|F Chain F, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55.
pdb|1ZNP|G Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr55
Length = 154
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 21/79 (26%)
Query: 7 KDGK-IKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYS 65
+DG+ ++ LG + ++PQ VP N W +S ++ ++
Sbjct: 79 QDGREVQTFTLGPAILEGERPQVIVPANCW--------------------QSAESLGDFT 118
Query: 66 LVGCTCAPAFQFEDFELAK 84
LVGCT +P F F F A+
Sbjct: 119 LVGCTVSPGFAFSSFVXAE 137
>pdb|1XE7|A Chain A, Crystal Structure Of The Yml079w Protein From
Saccharomyces Cerevisiae Reveals A New Sequence Family
Of The Jelly Roll Fold
pdb|1XE7|B Chain B, Crystal Structure Of The Yml079w Protein From
Saccharomyces Cerevisiae Reveals A New Sequence Family
Of The Jelly Roll Fold
pdb|1XE7|C Chain C, Crystal Structure Of The Yml079w Protein From
Saccharomyces Cerevisiae Reveals A New Sequence Family
Of The Jelly Roll Fold
Length = 203
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 8 DGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSF--PTNDFHISPDGAVSKVESRDAESHYS 65
DG++K +G D N + Q+ VP V+ SF P +F +
Sbjct: 119 DGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEF-----------------DNGF 161
Query: 66 LVGCTCAPAFQFEDFELAKRSD 87
L+ P F FED K D
Sbjct: 162 LISEVVVPGFDFEDHTFLKGED 183
>pdb|1XE8|A Chain A, Crystal Structure Of The Yml079w Protein From
Saccharomyces Cerevisiae Reveals A New Sequence Family
Of The Jelly Roll Fold.
pdb|1XE8|B Chain B, Crystal Structure Of The Yml079w Protein From
Saccharomyces Cerevisiae Reveals A New Sequence Family
Of The Jelly Roll Fold.
pdb|1XE8|C Chain C, Crystal Structure Of The Yml079w Protein From
Saccharomyces Cerevisiae Reveals A New Sequence Family
Of The Jelly Roll Fold
Length = 203
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 8 DGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSF--PTNDFHISPDGAVSKVESRDAESHYS 65
DG++K +G D N + Q+ VP V+ SF P +F +
Sbjct: 119 DGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEF-----------------DNGF 161
Query: 66 LVGCTCAPAFQFEDFELAKRSD 87
L+ P F FED K D
Sbjct: 162 LISEVVVPGFDFEDHTFLKGED 183
>pdb|1O7I|A Chain A, Crystal Structure Of A Single Stranded Dna Binding
Protein
pdb|1O7I|B Chain B, Crystal Structure Of A Single Stranded Dna Binding
Protein
Length = 119
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 4 LNDKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSF 39
+ D+ G++KLT G G+ ++ Q N W +F
Sbjct: 44 VGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTTAF 79
>pdb|1XUU|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) In
Complex With Mn2+ And Malate From Neisseria Meningitidis
pdb|1XUZ|A Chain A, Crystal Structure Analysis Of Sialic Acid Synthase
(Neub)from Neisseria Meningitidis, Bound To Mn2+,
Phosphoenolpyruvate, And N- Acetyl Mannosaminitol
pdb|2ZDR|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) From
Neisseria Meningitidis In Complex With Mg2+ And (4s)-2-
Methyl-2,4-Pentanediol
pdb|3CM4|A Chain A, Crystal Structure Of Metal-Free Sialic Acid Synthase
(Neub) From Neisseria Meningitidis In Complex With
Malate
Length = 349
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 58 RDAESHYSLVGCTCAPAFQFEDFELAKRSDLVSSFPN 94
R+A Y+L+ CT +ED L +DL +FP+
Sbjct: 171 REAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPD 207
>pdb|2WQP|A Chain A, Crystal Structure Of Sialic Acid Synthase Neub-Inhibitor
Complex
Length = 349
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 58 RDAESHYSLVGCTCAPAFQFEDFELAKRSDLVSSFPN 94
R+A Y+L+ CT +ED L +DL +FP+
Sbjct: 171 REAGVPYALLHCTNIYPTPYEDVRLGGXNDLSEAFPD 207
>pdb|2FMD|A Chain A, Structural Basis Of Carbohydrate Recognition By Bowringia
Milbraedii Seed Agglutinin
Length = 240
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 36 FGSFPTNDF------HISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAKRSDLV 89
F ++P D HI D V+ + S+ A G T + +KR +V
Sbjct: 128 FDTYPNTDIGDPNYRHIGID--VNSIRSKAASKWDWQNGKTATAHISYN--SASKRLSVV 183
Query: 90 SSFPNHAPLI 99
SS+PN +P++
Sbjct: 184 SSYPNSSPVV 193
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 16 LGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVE--SRDAES 62
+DL N++ +Y N FP N+ + D +SK+E S + ES
Sbjct: 462 FSDDLSKNERIEYNTQSNYIENDFPINELILDTD-LISKIELPSENTES 509
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,465,291
Number of Sequences: 62578
Number of extensions: 131620
Number of successful extensions: 278
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 16
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)