BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037731
         (106 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6ANC2|SYFB_DESPS Phenylalanine--tRNA ligase beta subunit OS=Desulfotalea
           psychrophila (strain LSv54 / DSM 12343) GN=pheT PE=3
           SV=1
          Length = 816

 Score = 33.1 bits (74), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 19  DLGNNQQPQYTVPPNVWFGSFPTNDF----HISPD--GAVSKVE 56
           DL NN++ ++TVPP      F T D+    H+ P+  G + KVE
Sbjct: 641 DLANNEKIEFTVPPEGAREPFSTQDYALTIHLGPNVLGTIGKVE 684


>sp|A2QPD9|KMO3_ASPNC Kynurenine 3-monooxygenase 3 OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=bna4-3 PE=3 SV=1
          Length = 499

 Score = 32.7 bits (73), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 27  QYTVPPNVWFGSF--PTNDFHISPDGAVSKVESRDAESHYSLVGCTC-APAFQFEDFELA 83
           ++ +PP+   G F    N  HI P      +    A+  ++   CT  APA+ +E  E +
Sbjct: 214 EFRIPPSPETGDFQISPNHLHIWPGKEFMFIALPSADKSFT---CTLFAPAWHYEKLEKS 270

Query: 84  KRSDLVSSFPNHAP 97
              DLV+SF  + P
Sbjct: 271 SPQDLVTSFDYNFP 284


>sp|Q5R9B4|FMR1_PONAB Fragile X mental retardation protein 1 homolog OS=Pongo abelii
           GN=FMR1 PE=2 SV=1
          Length = 594

 Score = 30.4 bits (67), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 1   IFELNDKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSK--VESR 58
           I E+ DK G +++     +  N  Q +  +PPN    S P+N+  + P+    K  +E +
Sbjct: 304 IQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPN----SLPSNNSRVGPNAPEEKKHLEIK 359

Query: 59  DAESHYS 65
           +  +H+S
Sbjct: 360 ENSTHFS 366


>sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2
          Length = 423

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 46 ISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDF 80
          +SPD  +++   R + S  S  G  C P  +FEDF
Sbjct: 56 LSPDSQLTEAPDRASASPNSCEGSVCDPCSEFEDF 90


>sp|Q9KSD1|MGLA_VIBCH Galactose/methyl galactoside import ATP-binding protein MglA
           OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
           Tor Inaba N16961) GN=mglA PE=3 SV=2
          Length = 502

 Score = 29.6 bits (65), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 23  NQQPQYTVPPNVWFGSFPTNDFHISPD 49
           NQ  Q +V  N+W G +PT  F +  D
Sbjct: 94  NQVKQCSVMDNIWLGRYPTKGFFVDHD 120


>sp|Q06787|FMR1_HUMAN Fragile X mental retardation protein 1 OS=Homo sapiens GN=FMR1 PE=1
           SV=1
          Length = 632

 Score = 29.3 bits (64), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 1   IFELNDKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSK--VESR 58
           I E+ DK G +++     +  N  Q +  +PPN    S P+N+  + P+    K  ++ +
Sbjct: 304 IQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPN----SLPSNNSRVGPNAPEEKKHLDIK 359

Query: 59  DAESHYS 65
           +  +H+S
Sbjct: 360 ENSTHFS 366


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,602,796
Number of Sequences: 539616
Number of extensions: 1617308
Number of successful extensions: 2725
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2723
Number of HSP's gapped (non-prelim): 7
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)