Query 037731
Match_columns 106
No_of_seqs 102 out of 540
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3loi_A Putative uncharacterize 100.0 5.2E-35 1.8E-39 218.0 9.5 84 1-106 87-171 (172)
2 1yud_A Hypothetical protein SO 100.0 6.6E-34 2.3E-38 211.6 9.7 85 2-106 84-168 (170)
3 3m3i_A Putative uncharacterize 100.0 2.9E-33 1E-37 215.8 8.8 83 10-105 130-212 (225)
4 1xe7_A YML079WP, hypothetical 100.0 1.1E-28 3.8E-33 187.8 8.7 77 2-94 114-191 (203)
5 1znp_A Hypothetical protein AT 99.9 1.9E-27 6.5E-32 174.7 7.0 66 2-88 76-141 (154)
6 2pa7_A DTDP-6-deoxy-3,4-keto-h 77.0 12 0.00042 25.9 7.3 50 8-82 73-123 (141)
7 3kmh_A D-lyxose isomerase; cup 76.8 5.2 0.00018 31.0 5.7 68 8-98 162-231 (246)
8 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 58.0 36 0.0012 24.9 6.7 28 9-42 106-133 (197)
9 3ejk_A DTDP sugar isomerase; Y 54.8 53 0.0018 23.4 7.1 30 9-42 100-130 (174)
10 3ryk_A DTDP-4-dehydrorhamnose 53.5 46 0.0016 24.5 6.7 30 9-42 120-149 (205)
11 1wlt_A 176AA long hypothetical 48.7 69 0.0024 23.4 7.0 30 9-42 115-144 (196)
12 1dzr_A DTDP-4-dehydrorhamnose 47.1 76 0.0026 22.7 7.0 30 9-42 97-126 (183)
13 2ixk_A DTDP-4-dehydrorhamnose 45.8 80 0.0027 22.6 7.0 30 9-42 98-127 (184)
14 1x82_A Glucose-6-phosphate iso 44.7 76 0.0026 22.1 6.6 43 20-83 123-165 (190)
15 1ep0_A DTDP-6-deoxy-D-XYLO-4-h 43.4 85 0.0029 22.5 6.7 30 9-42 97-126 (185)
16 3d0j_A Uncharacterized protein 42.9 20 0.0007 25.3 3.2 19 22-42 82-100 (140)
17 1upi_A DTDP-4-dehydrorhamnose 39.7 1.2E+02 0.004 22.7 7.1 30 9-42 116-145 (225)
18 4hn1_A Putative 3-epimerase in 37.8 1.1E+02 0.0039 22.4 6.7 31 8-42 93-123 (201)
19 1oi6_A PCZA361.16; epimerase, 36.2 1.2E+02 0.0043 22.0 6.9 30 9-42 97-126 (205)
20 2c0z_A NOVW; isomerase, epimer 34.2 1.4E+02 0.0048 22.0 7.3 30 9-42 105-134 (216)
21 3c3v_A Arachin ARAH3 isoform; 32.5 96 0.0033 25.8 6.1 31 8-40 401-439 (510)
22 1fxz_A Glycinin G1; proglycini 32.4 1.2E+02 0.0042 24.7 6.7 31 8-40 367-405 (476)
23 4gjz_A Lysine-specific demethy 31.6 36 0.0012 23.4 2.9 19 22-42 207-225 (235)
24 3o0a_A Leucyl-tRNA synthetase 31.5 5.9 0.0002 29.3 -1.3 19 70-88 140-158 (219)
25 4h7l_A Uncharacterized protein 30.7 91 0.0031 22.0 5.0 41 20-85 90-130 (157)
26 1wka_A Valyl-tRNA synthetase; 28.7 6.8 0.00023 27.1 -1.3 20 69-88 78-97 (147)
27 2y0o_A Probable D-lyxose ketol 26.8 76 0.0026 22.8 4.1 40 22-84 125-164 (175)
28 3st7_A Capsular polysaccharide 26.7 1.9E+02 0.0065 21.2 7.3 51 6-79 311-361 (369)
29 2xdv_A MYC-induced nuclear ant 26.4 57 0.002 26.4 3.7 18 22-41 205-222 (442)
30 3lwc_A Uncharacterized protein 26.4 77 0.0026 20.5 3.7 32 22-75 83-114 (119)
31 1wny_A Isoleucyl-tRNA syntheta 25.0 7.3 0.00025 27.8 -1.7 20 69-88 119-138 (186)
32 1ywk_A 4-deoxy-L-threo-5-hexos 24.8 1.3E+02 0.0045 23.5 5.3 32 63-94 255-286 (289)
33 2ajg_A Leucyl-tRNA synthetase; 24.4 9.2 0.00032 27.5 -1.3 20 69-88 118-137 (196)
34 2vhk_A Thaumatin-I; kinetics o 23.8 18 0.00062 27.0 0.2 21 17-37 28-48 (206)
35 3b23_C Variegin; hydrolase-hyd 23.0 22 0.00075 19.4 0.4 10 71-80 14-23 (32)
36 1du5_A Zeamatin; beta sandwich 22.8 19 0.00066 26.8 0.2 20 18-37 24-43 (206)
37 3jzv_A Uncharacterized protein 22.5 1.4E+02 0.0047 20.5 4.6 55 27-102 100-156 (166)
38 4diq_A Lysine-specific demethy 22.4 74 0.0025 26.5 3.7 19 22-42 234-252 (489)
39 3ht1_A REMF protein; cupin fol 21.4 71 0.0024 20.1 2.8 16 27-42 88-103 (145)
40 3ibm_A Cupin 2, conserved barr 21.1 95 0.0033 21.1 3.5 56 22-100 100-158 (167)
No 1
>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*
Probab=100.00 E-value=5.2e-35 Score=217.96 Aligned_cols=84 Identities=35% Similarity=0.637 Sum_probs=78.7
Q ss_pred CEEEeCCCCcEEEEEeCCCCCCCc-cceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCC
Q 037731 1 IFELNDKDGKIKLTCLGNDLGNNQ-QPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFED 79 (106)
Q Consensus 1 ~~~l~~~dG~~~~~vLG~dl~~Ge-~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~D 79 (106)
+++|++ ||++++++||+|+.+|| +||++||+|+||+|++ + +|+||||||+|||+|+|
T Consensus 87 l~~~~~-dG~~~~~~LG~d~~~Ge~~pQ~vVP~G~WqaA~~-~--------------------~~~LVsctVaPGF~f~d 144 (172)
T 3loi_A 87 IHMIHP-DGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEV-D--------------------GYCLASVLVAPGFDFKD 144 (172)
T ss_dssp EEEECT-TSCEEEEEESCTTTSTTCBSEEEECTTCEEEEEE-S--------------------SEEEEEEEEESCCCGGG
T ss_pred EEEEcC-CCceEEEEeCCCcccCCcceEEEECCCEEEEEEe-C--------------------CcEEEEEEEcCCccchh
Confidence 356776 99999999999999999 9999999999999997 3 59999999999999999
Q ss_pred ccccChhchhhhCCCcHHHHhhhCCCC
Q 037731 80 FELAKRSDLVSSFPNHAPLISLLTFPE 106 (106)
Q Consensus 80 fe~~~~~~L~~~~P~~~~~I~~lt~~~ 106 (106)
|+|+++++|+++||+|+++|++||++|
T Consensus 145 fel~~~~~L~~~~P~~~~~I~~lt~~~ 171 (172)
T 3loi_A 145 FSLGKREELIKEYPQHRDVIMRCTSSD 171 (172)
T ss_dssp CEECCHHHHHHHCGGGHHHHHHTSCC-
T ss_pred cEEcCHHHHHHHCchHHHHHHHhccCC
Confidence 999999999999999999999999975
No 2
>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16
Probab=100.00 E-value=6.6e-34 Score=211.59 Aligned_cols=85 Identities=35% Similarity=0.741 Sum_probs=79.3
Q ss_pred EEEeCCCCcEEEEEeCCCCCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCcc
Q 037731 2 FELNDKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFE 81 (106)
Q Consensus 2 ~~l~~~dG~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe 81 (106)
++|++ ||++++++||+|+.+||+||++||+|+||+|++.. ++|+||||||+|||+|+||+
T Consensus 84 ~l~~~-dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~-------------------g~~~LV~C~VaPGF~f~dfe 143 (170)
T 1yud_A 84 YMISP-EGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQ-------------------DGFSLVGCMVSPGFTFDDFE 143 (170)
T ss_dssp EEECT-TSCEEEEEESSCTTTTEESCEEECTTCEEEEEESS-------------------SSEEEEEEEESSCCCGGGCC
T ss_pred EEEcC-CCCEEEEEeCCCcccCceeEEEECCCCEEEEEECC-------------------CCcEEEEEEECCCccCCceE
Confidence 46676 99999999999999999999999999999999752 36999999999999999999
Q ss_pred ccChhchhhhCCCcHHHHhhhCCCC
Q 037731 82 LAKRSDLVSSFPNHAPLISLLTFPE 106 (106)
Q Consensus 82 ~~~~~~L~~~~P~~~~~I~~lt~~~ 106 (106)
++++++|+++||+++++|++||++|
T Consensus 144 l~~~~~L~~~~P~~~~~I~~lt~~~ 168 (170)
T 1yud_A 144 LFSQEALLAMYPQHKAVVQKLSRPE 168 (170)
T ss_dssp BCBHHHHHHSCCTTHHHHTTSCBCC
T ss_pred EcCHHHHHhHCchhHHHHHHhhhcc
Confidence 9999999999999999999999875
No 3
>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}
Probab=100.00 E-value=2.9e-33 Score=215.81 Aligned_cols=83 Identities=30% Similarity=0.596 Sum_probs=75.6
Q ss_pred cEEEEEeCCCCCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccccChhchh
Q 037731 10 KIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAKRSDLV 89 (106)
Q Consensus 10 ~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~~~~~L~ 89 (106)
.+++++||+|+.+||++|++||+|+||+|++.++. +++.++|+||||||+|||+|+||+|+++++|+
T Consensus 130 ~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~-------------~~~~~~~sLVsCtVaPGFdF~DFel~~~~~L~ 196 (225)
T 3m3i_A 130 VYRRVLVGARVERGELLQYTVPGGAIFGSSVAADG-------------ADGQAGYSLVSCIVSPGFDYRDFEIFTQAQLM 196 (225)
T ss_dssp EEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSS-------------TTCSSSCEEEEEEEESCCCGGGCEECBHHHHH
T ss_pred ceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCC-------------cCcCCCeEEEEEEEcCCccchhcEecCHHHHH
Confidence 78999999999999999999999999999987531 12334799999999999999999999999999
Q ss_pred hhCCCcHHHHhhhCCC
Q 037731 90 SSFPNHAPLISLLTFP 105 (106)
Q Consensus 90 ~~~P~~~~~I~~lt~~ 105 (106)
++||+|+++|++||+.
T Consensus 197 ~~~P~~~~~I~~lt~~ 212 (225)
T 3m3i_A 197 ELYPQHEAVIKQMAYE 212 (225)
T ss_dssp HHCGGGHHHHHHHSBC
T ss_pred HHCchHHHHHHHhchh
Confidence 9999999999999975
No 4
>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*
Probab=99.95 E-value=1.1e-28 Score=187.84 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=68.0
Q ss_pred EEEeCCCCcEEEEEeCCCCCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCcc
Q 037731 2 FELNDKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFE 81 (106)
Q Consensus 2 ~~l~~~dG~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe 81 (106)
++|++ ||++++++||+|+.+||++|+|||+|+||+|++..+ +.-++|+||||||+|||+|+||+
T Consensus 114 ~li~~-dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~---------------~~~~~~tLVgCtVaPGFdF~dFe 177 (203)
T 1xe7_A 114 VLVYP-DGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPN---------------EEFDNGFLISEVVVPGFDFEDHT 177 (203)
T ss_dssp EEECT-TSCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCC---------------TTTTTCEEEEEEESSCCCGGGEE
T ss_pred EEEcC-CCCEEEEEeCCCcccCcccEEEEcCCEEEEeEecCC---------------CCcccceEEEEEecCCccchhcE
Confidence 46776 999999999999999999999999999999998631 11134689999999999999999
Q ss_pred ccChh-chhhhCCC
Q 037731 82 LAKRS-DLVSSFPN 94 (106)
Q Consensus 82 ~~~~~-~L~~~~P~ 94 (106)
|++++ +|+++||+
T Consensus 178 l~~~~~~L~~~~P~ 191 (203)
T 1xe7_A 178 FLKGEDELKHLVGP 191 (203)
T ss_dssp ECCHHHHHHHHHCH
T ss_pred ecCCcHHHHHHCCH
Confidence 99999 99999994
No 5
>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16
Probab=99.94 E-value=1.9e-27 Score=174.70 Aligned_cols=66 Identities=29% Similarity=0.548 Sum_probs=60.0
Q ss_pred EEEeCCCCcEEEEEeCCCCCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCcc
Q 037731 2 FELNDKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFE 81 (106)
Q Consensus 2 ~~l~~~dG~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe 81 (106)
++|.+ ||.+++++||+|+.+||+||+|||+|+||+|++. ++|+||||||+|||+|+||+
T Consensus 76 ~~~~~-dg~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~--------------------g~~~LVsCtVaPGF~f~dFe 134 (154)
T 1znp_A 76 HLSQD-GREVQTFTLGPAILEGERPQVIVPANCWQSAESL--------------------GDFTLVGCTVSPGFAFSSFV 134 (154)
T ss_dssp EEESS-SSCCEEEEESSCTTTTEESEEEECTTCEEEEEES--------------------SSEEEEEEEESSCCCGGGEE
T ss_pred EEEcC-CCcEEEEEeCCCcccCcccEEEEcCCEEEEeeEC--------------------CCeEEEEEEecCCCcccccE
Confidence 45555 9999999999999999999999999999999975 36999999999999999999
Q ss_pred ccChhch
Q 037731 82 LAKRSDL 88 (106)
Q Consensus 82 ~~~~~~L 88 (106)
|+++++.
T Consensus 135 l~~~~~~ 141 (154)
T 1znp_A 135 MAEPGWS 141 (154)
T ss_dssp ECCTTCC
T ss_pred ecCCCCC
Confidence 9999754
No 6
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=76.98 E-value=12 Score=25.92 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCc-EEEEEeCCCCCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccc
Q 037731 8 DGK-IKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFEL 82 (106)
Q Consensus 8 dG~-~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~ 82 (106)
||+ .++.+|+.+ .+-+.||+|+|.+-.... . + |++=..-+=.|+.+||.-
T Consensus 73 Dg~~~~~~~L~~~-----~~gL~IppgvWh~~~~~s------------------~-~-avllvlas~~Yd~~dyir 123 (141)
T 2pa7_A 73 DGNIIQEITLDSP-----AVGLYVGPAVWHEMHDFS------------------S-D-CVMMVLASDYYDETDYIR 123 (141)
T ss_dssp CSSCEEEEEECCT-----TEEEEECTTCEEEEECCC------------------T-T-CEEEEEESSCCCGGGEEC
T ss_pred CCcEEEEEEECCC-----CcEEEeCCCEEEEEEEcC------------------C-C-eEEEEECCCCcCHHHeee
Confidence 564 556668764 246899999999976542 1 2 555445555677777754
No 7
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=76.84 E-value=5.2 Score=30.96 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCcEEEEEeCCCC--CCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccccCh
Q 037731 8 DGKIKLTCLGNDL--GNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAKR 85 (106)
Q Consensus 8 dG~~~~~vLG~dl--~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~~~ 85 (106)
||..++.-.|.-| ..|| |+.+++|+|..=.... +.|-+|||++=.+--|-.|=.|.+.
T Consensus 162 DG~~~~~~aG~~i~L~PGE--SiTl~Pg~~H~F~ae~------------------g~G~vligEVSt~NDD~~DN~F~~p 221 (246)
T 3kmh_A 162 DGCRQKHTAGSQLRLSPGE--SICLPPGLYHSFWAEA------------------GFGDVLVGEVSSVNDDDHDNHFLQP 221 (246)
T ss_dssp TTEEEEECTTCEEEECTTC--EEEECTTEEEEEEECT------------------TSCCEEEEEEEECCCTTTSEEESSC
T ss_pred CCeEEEeCCCCEEEECCCC--eEecCCCCEEEEEecC------------------CCccEEEEEcccCcCCCCCccccCC
Confidence 6666665555543 3576 7999999987755432 1245999999999999999777754
Q ss_pred hchhhhCCCcHHH
Q 037731 86 SDLVSSFPNHAPL 98 (106)
Q Consensus 86 ~~L~~~~P~~~~~ 98 (106)
+.+||+-.+.
T Consensus 222 ---igRfp~IeED 231 (246)
T 3kmh_A 222 ---LDRYNLIDED 231 (246)
T ss_dssp ---C----CCBCS
T ss_pred ---cCCCCCcccC
Confidence 6778876543
No 8
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Probab=58.02 E-value=36 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|+. ..|+.||+|.|.+=....
T Consensus 106 g~~~~v~Ls~------~~~L~IP~G~aHgf~~ls 133 (197)
T 1nxm_A 106 GNTYQTVIDA------SKSIFVPRGVANGFQVLS 133 (197)
T ss_dssp TCEEEEEECT------TEEEEECTTEEEEEEECS
T ss_pred CeEEEEEeCC------CcEEEeCCCeEEEEEecc
Confidence 6788888873 569999999999977654
No 9
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=54.80 E-value=53 Score=23.43 Aligned_cols=30 Identities=33% Similarity=0.741 Sum_probs=22.9
Q ss_pred CcEEEEEeC-CCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLG-NDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG-~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|+ .+ ...|+.||+|.|.+-....
T Consensus 100 g~~~~v~Ls~~~----n~~~L~IP~G~aHgf~~ls 130 (174)
T 3ejk_A 100 GRLAQVTLGRPD----NYRLLRIPPQVWYGFAATG 130 (174)
T ss_dssp TCEEEEEEETTT----BCEEEEECTTCEEEEEECT
T ss_pred CeEEEEEECCcc----CceEEEeCCCcEEEEEEcc
Confidence 667788887 33 2568999999999987664
No 10
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}
Probab=53.51 E-value=46 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|..+ ...|+.||+|.|.+=..+.
T Consensus 120 g~~~~~~Ls~~----n~~~L~IP~G~aHGF~~Ls 149 (205)
T 3ryk_A 120 KQWRGYILSAD----NHRQLLVPKGFAHGFCTLV 149 (205)
T ss_dssp TCEEEEEEETT----TCCEEEECTTEEEEEEECS
T ss_pred CeEEEEEecCC----CCCEEEeCCCceEEEEEcC
Confidence 66777777753 2569999999999987664
No 11
>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A
Probab=48.69 E-value=69 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|..+ ...|+.||+|.|.+=....
T Consensus 115 G~~~~v~Ls~e----n~~~L~IP~G~aHgf~~ls 144 (196)
T 1wlt_A 115 GKYVKAELNEE----NHYMLWIPPGFAHGFQALE 144 (196)
T ss_dssp TCEEEEEEETT----TCCEEEECTTEEEEEEESS
T ss_pred CeEEEEEecCC----CCCEEEeCCCeEEEEEEcC
Confidence 56777777654 2458999999999977664
No 12
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*
Probab=47.05 E-value=76 Score=22.70 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|..+ ...|+.||+|.|.+=....
T Consensus 97 g~~~~~~Ls~~----n~~~L~IP~G~aHgf~~ls 126 (183)
T 1dzr_A 97 GQWVGVNLSAE----NKRQLWIPEGFAHGFVTLS 126 (183)
T ss_dssp TCEEEEEEETT----TCCEEEECTTEEEEEEECS
T ss_pred CeEEEEEecCC----CCCEEEeCCCeEEEEEEcC
Confidence 55677777654 2468999999999977664
No 13
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*
Probab=45.81 E-value=80 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|..+ ...|+.||+|.|.+=....
T Consensus 98 g~~~~~~Ls~~----n~~~L~IP~G~aHgf~~ls 127 (184)
T 2ixk_A 98 GQWVGERLSAE----NKRQMWIPAGFAHGFVVLS 127 (184)
T ss_dssp TCEEEEEEETT----TCCEEEECTTEEEEEEECS
T ss_pred CeEEEEEeCCC----cCCEEEeCCCeEEEEEEcC
Confidence 56777777754 2468999999999977664
No 14
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=44.72 E-value=76 Score=22.05 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=28.7
Q ss_pred CCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCcccc
Q 037731 20 LGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELA 83 (106)
Q Consensus 20 l~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~ 83 (106)
+..|+ .++||+|++..-+..++ .-+-+-|++.|.|..++..+.
T Consensus 123 l~~GD--~v~ip~g~~H~~~N~g~-------------------~~~~~l~v~~~~~~~~~~~~~ 165 (190)
T 1x82_A 123 MEPGT--VVYVPPYWAHRTVNIGD-------------------EPFIFLAIYPADAGHDYGTIA 165 (190)
T ss_dssp ECTTC--EEEECTTCEEEEEECSS-------------------SCEEEEEEEETTCCCBCHHHH
T ss_pred ECCCc--EEEECCCCeEEEEECCc-------------------ccEEEEEEECCCcccccHhhH
Confidence 34566 57899999998876542 124456778888877655544
No 15
>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*
Probab=43.41 E-value=85 Score=22.48 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|..+ ...|+.||+|.|.+=....
T Consensus 97 g~~~~~~Ls~~----n~~~L~IP~G~aHgf~~ls 126 (185)
T 1ep0_A 97 GEWTGVRLSDE----NRREFFIPEGFAHGFLALS 126 (185)
T ss_dssp TCEEEEEEETT----TCCEEEECTTEEEEEEECS
T ss_pred CeEEEEEecCC----CCCEEEeCCCeEEEEEEcC
Confidence 56777777654 2468999999999977664
No 16
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=42.94 E-value=20 Score=25.32 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=14.7
Q ss_pred CCccceEEeCCCceEEeeeCC
Q 037731 22 NNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
.|+ .++||+|+|.......
T Consensus 82 ~Ge--~yvVPkGveH~p~a~~ 100 (140)
T 3d0j_A 82 KGK--VYNVPAECWFYSITQK 100 (140)
T ss_dssp TTC--CEEECTTCEEEEEECT
T ss_pred CCC--EEEeCCCccCcccCCC
Confidence 455 5999999999877543
No 17
>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*
Probab=39.70 E-value=1.2e+02 Score=22.69 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++..+.|..+ ...|+.||+|.|.+=....
T Consensus 116 G~~~~v~Ls~~----n~~~L~IP~G~aHgF~~Ls 145 (225)
T 1upi_A 116 GRWDSVLLDDQ----DRRTIYVSEGLAHGFLALQ 145 (225)
T ss_dssp TCEEEEEEETT----TCCEEEECTTCEEEEEECS
T ss_pred CcEEEEEecCC----CCcEEEeCCCeeEEEEEcC
Confidence 55666667654 2469999999999977664
No 18
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A
Probab=37.76 E-value=1.1e+02 Score=22.40 Aligned_cols=31 Identities=3% Similarity=0.054 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 8 DGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 8 dG~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
=|++..+.|+.+ ...|+.||+|.|.+=..+.
T Consensus 93 fG~w~~v~Ls~e----n~~~l~IP~GfaHGF~~Ls 123 (201)
T 4hn1_A 93 FGRWEIVPMDAE----RNTAVYLTAGLGRAFLSLT 123 (201)
T ss_dssp TTCEEEEEEETT----TCCEEEECTTCEEEEEECS
T ss_pred CCeEEEEEecCC----CCCEEEeCCcceEEEeecC
Confidence 367777778753 2579999999999987764
No 19
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A
Probab=36.22 E-value=1.2e+02 Score=22.05 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++..+.|..+ ...|+.||+|.|.+=....
T Consensus 97 G~~~~v~Ls~~----n~~~L~IP~G~aHgf~~ls 126 (205)
T 1oi6_A 97 GQWDSVLMDQQ----DPRAVYLPVGVGHAFVALE 126 (205)
T ss_dssp TCEEEEEECSS----SCCEEEECTTCEEEEEECS
T ss_pred CeEEEEEecCC----CCCEEEeCCCeeEEEEEcc
Confidence 45666666654 2469999999999977664
No 20
>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1
Probab=34.23 E-value=1.4e+02 Score=22.05 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCCCCccceEEeCCCceEEeeeCC
Q 037731 9 GKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 9 G~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
|++....|..+ ...|+.||+|.|.+=....
T Consensus 105 G~~~~v~Ls~~----n~~~L~IP~G~aHgF~~Ls 134 (216)
T 2c0z_A 105 GCWEGTRLDDV----SRRAVYLSEGIGHGFCAIS 134 (216)
T ss_dssp TCEEEEEEETT----TCCEEEECTTEEEEEEECS
T ss_pred CeEEEEEecCC----CCCEEEeCCCeeEEEEEcC
Confidence 56777777654 2468999999999977664
No 21
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=32.53 E-value=96 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCC--------CCCCccceEEeCCCceEEeee
Q 037731 8 DGKIKLTCLGND--------LGNNQQPQYTVPPNVWFGSFP 40 (106)
Q Consensus 8 dG~~~~~vLG~d--------l~~Ge~~Q~vVP~G~W~aA~~ 40 (106)
.|+.+..+.+.+ +.+|+ .++||+|++.....
T Consensus 401 ~G~~~v~vv~~~G~~~~~~~l~~GD--v~viP~G~~H~~~N 439 (510)
T 3c3v_A 401 RGRAHVQVVDSNGNRVYDEELQEGH--VLVVPQNFAVAGKS 439 (510)
T ss_dssp ESEEEEEEECTTSCEEEEEEEETTC--EEEECTTCEEEEEE
T ss_pred eCEEEEEEEeCCCCEEEeEEEcCCc--EEEECCCCeEEEEe
Confidence 366666666653 55676 48999999998765
No 22
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=32.40 E-value=1.2e+02 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCC--------CCCCccceEEeCCCceEEeee
Q 037731 8 DGKIKLTCLGND--------LGNNQQPQYTVPPNVWFGSFP 40 (106)
Q Consensus 8 dG~~~~~vLG~d--------l~~Ge~~Q~vVP~G~W~aA~~ 40 (106)
.|+.+..+.+.+ +.+|+ .++||+|.+.....
T Consensus 367 ~G~~~v~v~~~~G~~~~~~~l~~GD--v~viP~G~~H~~~n 405 (476)
T 1fxz_A 367 NGRALIQVVNCNGERVFDGELQEGR--VLIVPQNFVVAARS 405 (476)
T ss_dssp ESEEEEEEECTTSCEEEEEEEETTC--EEEECTTCEEEEEE
T ss_pred eCEEEEEEEecCCCEEeeeEEcCCC--EEEECCCCeEEEEe
Confidence 366666666643 55676 58999999998765
No 23
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=31.62 E-value=36 Score=23.43 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=15.3
Q ss_pred CCccceEEeCCCceEEeeeCC
Q 037731 22 NNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
.|+ .+.||+|||...+.++
T Consensus 207 pGD--~LyiP~gW~H~V~~l~ 225 (235)
T 4gjz_A 207 PGE--ILFIPVKYWHYVRALD 225 (235)
T ss_dssp TTC--EEEECTTCEEEEEESS
T ss_pred CCC--EEEeCCCCcEEEEECC
Confidence 466 4789999999998763
No 24
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=31.47 E-value=5.9 Score=29.34 Aligned_cols=19 Identities=47% Similarity=0.852 Sum_probs=16.5
Q ss_pred eecCCcccCCccccChhch
Q 037731 70 TCAPAFQFEDFELAKRSDL 88 (106)
Q Consensus 70 tVaPGF~f~Dfe~~~~~~L 88 (106)
..+|+++.+||+++.+-.|
T Consensus 140 ~~aPaHd~~D~~~~~k~~L 158 (219)
T 3o0a_A 140 MCVPAHDQRDWEFAKKYDL 158 (219)
T ss_dssp EECTTTCHHHHHHHHHHTC
T ss_pred EECCCCCHHHHHHHHHcCC
Confidence 5789999999999987665
No 25
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=30.69 E-value=91 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccccCh
Q 037731 20 LGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAKR 85 (106)
Q Consensus 20 l~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~~~ 85 (106)
+.+|+ -++||+|+....+ + =.-+=|+++|.|+.+|=.|...
T Consensus 90 l~~GD--~v~IPpg~~H~i~--g---------------------~l~~L~I~~Pp~~~eD~~f~e~ 130 (157)
T 4h7l_A 90 LTKLL--AISIPPLVRHRIV--G---------------------EATIINIVSPPFDPADEWFDSS 130 (157)
T ss_dssp CCTTE--EEEECTTCCEEEE--S---------------------CEEEEEEEESSCCTTCCBC---
T ss_pred eCCCC--EEEECCCCeEeeE--C---------------------CEEEEEEECCCCCCCcceEccc
Confidence 34555 5789999888764 1 1556789999999999777754
No 26
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=28.72 E-value=6.8 Score=27.10 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.6
Q ss_pred eeecCCcccCCccccChhch
Q 037731 69 CTCAPAFQFEDFELAKRSDL 88 (106)
Q Consensus 69 ctVaPGF~f~Dfe~~~~~~L 88 (106)
..++|+++.+||+++++-.|
T Consensus 78 V~~~Pah~~~D~~~~~~~~L 97 (147)
T 1wka_A 78 LKVTPAHDPLDYEIGERHGL 97 (147)
T ss_dssp EEECTTTCHHHHHHHHHHTC
T ss_pred EEEccCCCHHHHHHHHHcCC
Confidence 45789999999999987655
No 27
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=26.80 E-value=76 Score=22.80 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccccC
Q 037731 22 NNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAK 84 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~~ 84 (106)
.|+ ++.||+|+|-+..... +-+||+++=.|-.|-.| .|.+
T Consensus 125 pGe--svtIppg~~H~f~age--------------------egvli~EvSt~~dDe~D-rf~d 164 (175)
T 2y0o_A 125 PGG--QYTIPPNTKHWFQAGE--------------------EGAVVTEMSSTSTDKHD-IFTD 164 (175)
T ss_dssp TTC--EEEECTTCCEEEEEEE--------------------EEEEEEEEEECCCGGGC-EESS
T ss_pred CCC--EEEECCCCcEEEEeCC--------------------CCEEEEEEeCCCCCCCc-EEEc
Confidence 355 7999999999887421 23889988888888888 5554
No 28
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=26.68 E-value=1.9e+02 Score=21.19 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=31.5
Q ss_pred CCCCcEEEEEeCCCCCCCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCC
Q 037731 6 DKDGKIKLTCLGNDLGNNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFED 79 (106)
Q Consensus 6 ~~dG~~~~~vLG~dl~~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~D 79 (106)
+.+|+.....++.+ +.-++.||+|+|.+-...++ +=+.+=+.+..=|+.+|
T Consensus 311 ~~~~~~~~~~~~~~----~~~~~~ip~g~~h~~~n~~~-------------------~~~~~~~~~~~~y~~~~ 361 (369)
T 3st7_A 311 VNDDEIIEYYVSGD----KLEVVDIPVGYTHNIENLGD-------------------TDMVTIMWVNEMFDPNQ 361 (369)
T ss_dssp TTCCCCEEEEEETT----BCCEEEECTTEEEEEEECSS-------------------SCEEEEEEESSCCCSSS
T ss_pred CCCCcEEEEEecCC----cceEEEeCCCceEEeEEcCC-------------------CcEEEEEecCcccCCCC
Confidence 34566666666321 12368899999999887652 12555556666666655
No 29
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=26.43 E-value=57 Score=26.43 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=14.6
Q ss_pred CCccceEEeCCCceEEeeeC
Q 037731 22 NNQQPQYTVPPNVWFGSFPT 41 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~ 41 (106)
.|+ .+.||+|+|..++..
T Consensus 205 pGD--~LYiP~g~~H~~~s~ 222 (442)
T 2xdv_A 205 PGD--LLYFPRGTIHQADTP 222 (442)
T ss_dssp TTC--EEEECTTCEEEEECC
T ss_pred CCc--EEEECCCceEEEEec
Confidence 365 478999999999865
No 30
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=26.37 E-value=77 Score=20.45 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=22.2
Q ss_pred CCccceEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCc
Q 037731 22 NNQQPQYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAF 75 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF 75 (106)
.|+ .+.||+|+...-+.. ++.+.+=+++.|+|
T Consensus 83 ~GD--~v~ip~g~~H~~~~~--------------------~~~~~~l~v~~P~w 114 (119)
T 3lwc_A 83 PGE--IVYMPKGETVTIRSH--------------------EEGALTAYVTYPHW 114 (119)
T ss_dssp TTC--EEEECTTCEEEEEEE--------------------EEEEEEEEEEECC-
T ss_pred CCC--EEEECCCCEEEEEcC--------------------CCCeEEEEEECCCC
Confidence 455 578999987654421 24788889999993
No 31
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=24.97 E-value=7.3 Score=27.81 Aligned_cols=20 Identities=45% Similarity=0.522 Sum_probs=16.7
Q ss_pred eeecCCcccCCccccChhch
Q 037731 69 CTCAPAFQFEDFELAKRSDL 88 (106)
Q Consensus 69 ctVaPGF~f~Dfe~~~~~~L 88 (106)
...+||++.+||+++.+-.|
T Consensus 119 V~~aPahg~~D~~~~~~~~L 138 (186)
T 1wny_A 119 VHQAPAFGAEDLETARVYGL 138 (186)
T ss_dssp EEECGGGCHHHHHHHHHHTC
T ss_pred EEEcCCCCHHHHHHHHHcCC
Confidence 35689999999999987665
No 32
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13
Probab=24.82 E-value=1.3e+02 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.454 Sum_probs=10.1
Q ss_pred ceEEEEeeecCCcccCCccccChhchhhhCCC
Q 037731 63 HYSLVGCTCAPAFQFEDFELAKRSDLVSSFPN 94 (106)
Q Consensus 63 ~ysLv~ctVaPGF~f~Dfe~~~~~~L~~~~P~ 94 (106)
.|+++=++..|-=+|.|.....-++|.+-+-+
T Consensus 255 ~Y~ylwvMAG~n~~~~dmd~~~~~~~~~~~~~ 286 (289)
T 1ywk_A 255 NYSFIWAMCGENITYTDMDMVAMDQLKEGHHH 286 (289)
T ss_dssp CCEEEEEEECC---------------------
T ss_pred CeEEEEEEEcCCccCccCcccchhhhhccccc
Confidence 59999999999999999999999999876443
No 33
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=24.41 E-value=9.2 Score=27.48 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.7
Q ss_pred eeecCCcccCCccccChhch
Q 037731 69 CTCAPAFQFEDFELAKRSDL 88 (106)
Q Consensus 69 ctVaPGF~f~Dfe~~~~~~L 88 (106)
...+|+++.+||+++.+-.|
T Consensus 118 V~~aPah~~~D~~~~~k~~L 137 (196)
T 2ajg_A 118 VMAVPGHDQRDYEFASKYGL 137 (196)
T ss_dssp EEECTTTCHHHHHHHHHHTC
T ss_pred EEECCCCCHHHHHHHHHcCC
Confidence 45689999999999887655
No 34
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=23.76 E-value=18 Score=27.00 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred CCCCCCCccceEEeCCCceEE
Q 037731 17 GNDLGNNQQPQYTVPPNVWFG 37 (106)
Q Consensus 17 G~dl~~Ge~~Q~vVP~G~W~a 37 (106)
|-.|..||..++.||.|+|.+
T Consensus 28 G~~L~~G~s~~~~vp~~~wsG 48 (206)
T 2vhk_A 28 GRQLNSGESWTINVEPGTNGG 48 (206)
T ss_dssp EEEECTTCEEEEECCTTCCSE
T ss_pred CeecCCCCEEEEECCCCCccc
Confidence 445678999999999999965
No 35
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=23.01 E-value=22 Score=19.37 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.3
Q ss_pred ecCCcccCCc
Q 037731 71 CAPAFQFEDF 80 (106)
Q Consensus 71 VaPGF~f~Df 80 (106)
-+||+||+++
T Consensus 14 ~~p~gDFE~I 23 (32)
T 3b23_C 14 TAPPFDFEAI 23 (32)
T ss_pred cCCCCChhhC
Confidence 3688888765
No 36
>1du5_A Zeamatin; beta sandwich, antifungal protein; 2.50A {Zea mays} SCOP: b.25.1.1
Probab=22.80 E-value=19 Score=26.80 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.4
Q ss_pred CCCCCCccceEEeCCCceEE
Q 037731 18 NDLGNNQQPQYTVPPNVWFG 37 (106)
Q Consensus 18 ~dl~~Ge~~Q~vVP~G~W~a 37 (106)
-.|..||..++.||+|+|.+
T Consensus 24 ~~L~~G~s~s~~vp~~~wsG 43 (206)
T 1du5_A 24 RQLNRGESWRITAPAGTTAA 43 (206)
T ss_dssp EEECTTCEEEEECCTTCCSE
T ss_pred EecCCCCeEEEECCCCCccc
Confidence 34567999999999999964
No 37
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.55 E-value=1.4e+02 Score=20.47 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=33.2
Q ss_pred eEEeCCCceEEeeeCCCCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccccChhchhh--hCCCcHHHHhhh
Q 037731 27 QYTVPPNVWFGSFPTNDFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAKRSDLVS--SFPNHAPLISLL 102 (106)
Q Consensus 27 Q~vVP~G~W~aA~~~~d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~~~~~L~~--~~P~~~~~I~~l 102 (106)
-++||+|+|..-+..++ .=+.+=|++.+. -....+.+.++|.+ .-|..+++|+..
T Consensus 100 ~i~ip~g~~H~~~n~~~-------------------~~~~~l~i~~~~--~d~p~~p~~~~l~~l~~~~~~~~~~~~~ 156 (166)
T 3jzv_A 100 LVTIPGWSWHQFRAPAD-------------------EALGFLCMVNAE--RDKPQLPTEADLAMLRADDAVAAFLDGL 156 (166)
T ss_dssp EEEECTTCCEEEECCTT-------------------SCEEEEEEEESS--CCCCBCCCHHHHHHHHTSHHHHHHHTTC
T ss_pred EEEECCCCcEEeEeCCC-------------------CCEEEEEEEccC--CCCCCCCCHHHHHHHHhCcchhhhhccc
Confidence 57899999998775432 123445666664 23345566666644 366666666543
No 38
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=22.39 E-value=74 Score=26.53 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=15.2
Q ss_pred CCccceEEeCCCceEEeeeCC
Q 037731 22 NNQQPQYTVPPNVWFGSFPTN 42 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~~ 42 (106)
.|+ .+.||.|+|..++..+
T Consensus 234 pGD--vLYiP~g~~H~~~s~~ 252 (489)
T 4diq_A 234 PGD--LLYFPRGFIHQAECQD 252 (489)
T ss_dssp TTC--EEEECTTCEEEEEBCS
T ss_pred CCC--EEEECCCCceEEEecC
Confidence 355 4789999999999764
No 39
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=21.35 E-value=71 Score=20.11 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=12.0
Q ss_pred eEEeCCCceEEeeeCC
Q 037731 27 QYTVPPNVWFGSFPTN 42 (106)
Q Consensus 27 Q~vVP~G~W~aA~~~~ 42 (106)
-++||+|++...+..+
T Consensus 88 ~~~ip~~~~H~~~~~~ 103 (145)
T 3ht1_A 88 AIFIPRGEPHGFVTGP 103 (145)
T ss_dssp EEEECTTCCBEEECCT
T ss_pred EEEECCCCeEEeEcCC
Confidence 4678999998877543
No 40
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=21.09 E-value=95 Score=21.08 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=32.1
Q ss_pred CCccceEEeCCCceEEeeeCC-CCCCCCCCcccccccCCCCCceEEEEeeecCCcccCCccccChhchhh--hCCCcHHH
Q 037731 22 NNQQPQYTVPPNVWFGSFPTN-DFHISPDGAVSKVESRDAESHYSLVGCTCAPAFQFEDFELAKRSDLVS--SFPNHAPL 98 (106)
Q Consensus 22 ~Ge~~Q~vVP~G~W~aA~~~~-d~~~~~~~~~~k~~~~~~~~~ysLv~ctVaPGF~f~Dfe~~~~~~L~~--~~P~~~~~ 98 (106)
.|+ -++||+|++..-+..+ + .-+-+-|++.|.-+ -..+.+.++|.+ +-|..+++
T Consensus 100 ~Gd--~i~ip~~~~H~~~n~~~~-------------------~~~~~l~i~~~~~d--~p~~p~~~~~~~l~~~~~~~~~ 156 (167)
T 3ibm_A 100 PLD--CVYIAPHAWHQIHATGAN-------------------EPLGFLCIVDSDRD--RPQRPDADDLARMCADPAVARR 156 (167)
T ss_dssp TTC--EEEECTTCCEEEEEESSS-------------------CCEEEEEEEESSCC--CCBCCCHHHHHHHTTSHHHHHH
T ss_pred CCC--EEEECCCCcEEEEeCCCC-------------------CCEEEEEEEeCCcC--cccCCCHHHHHHHHcChHHHHh
Confidence 454 4789999998877543 2 12344466766622 234556666644 35555555
Q ss_pred Hh
Q 037731 99 IS 100 (106)
Q Consensus 99 I~ 100 (106)
|+
T Consensus 157 ~~ 158 (167)
T 3ibm_A 157 IR 158 (167)
T ss_dssp CC
T ss_pred hc
Confidence 54
Done!