BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037732
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 147 LDITVIRDLKKLAVLCLRGSDIKRLPVEVGEXXXXXXXXXXXCMELEVIPPNILSNLSHL 206
L+ V L L L L + + LPV V + +L V+P + L HL
Sbjct: 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114
Query: 207 EELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLE--TFKI 264
+EL+M + +E L HL L L + + P G F ++L T
Sbjct: 115 KELFMCCNKLTELPRGIE--------RLTHLTHLALDQNQLKSIPHGAF-DRLSSLTHAY 165
Query: 265 LIGGVWGWEYADI 277
L G W E DI
Sbjct: 166 LFGNPWDCECRDI 178
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + + L+ L++L +L LQ + T
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTI 188
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 189 PKGFFGSHLLPFAFLHGNPW 208
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250
EL+ +PP +L+ LE+L + + + L+ L++L +L LQ + T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL-------LNGLENLDTLLLQENSLYTI 187
Query: 251 PRGLFLEKLETFKILIGGVW 270
P+G F L F L G W
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 198 NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF------P 251
N + N S++ L M P DK V+G N LH +++L + V P
Sbjct: 225 NFIENASYMSILGMTPGFGDK-TFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNP 283
Query: 252 RGLFLEKLETFKILIGGVWGWEYADIW 278
G+ ++LE FK+ G + G+ A I+
Sbjct: 284 DGIDPKELEDFKLQHGTILGFPKAKIY 310
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 198 NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF------P 251
N ++ S++ L M P DK V V+G N LH +++L + V P
Sbjct: 225 NFINEASYMSILGMTPGFGDKTFV-VQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNP 283
Query: 252 RGLFLEKLETFKILIGGVWGWEYADIW 278
G+ ++LE FK+ G + G+ A I+
Sbjct: 284 DGIDPKELEDFKLQHGTILGFPKAKIY 310
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 198 NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF------P 251
N ++ S++ L M P DK V+G N LH +++L + V P
Sbjct: 225 NFINEASYMSILGMTPGFGDK-TFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNP 283
Query: 252 RGLFLEKLETFKILIGGVWGWEYADIW 278
G+ ++LE FK+ G + G+ A I+
Sbjct: 284 DGIDPKELEDFKLQHGTILGFPKAKIY 310
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 203 LSHLEELYMGP-RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLET 261
LSH+EELY G R+ + + V A + + H+IS L +N F R E+++
Sbjct: 489 LSHVEELYGGEVRNAGQVIAALMRVATALMLSVSHVISTSLDGH-INAFAREYTKERIDC 547
Query: 262 FKILIGGV 269
+ L G +
Sbjct: 548 VQTLEGRI 555
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,905,579
Number of Sequences: 62578
Number of extensions: 328673
Number of successful extensions: 617
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 27
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)