Query 037732
Match_columns 350
No_of_seqs 197 out of 3166
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 5.3E-26 1.1E-30 221.5 9.9 329 1-347 422-788 (889)
2 PLN00113 leucine-rich repeat r 99.9 1.6E-23 3.4E-28 212.7 15.6 246 80-342 89-369 (968)
3 PLN00113 leucine-rich repeat r 99.9 9.7E-23 2.1E-27 206.9 16.5 248 81-344 137-419 (968)
4 KOG0444 Cytoskeletal regulator 99.9 9E-24 2E-28 190.2 -1.4 265 64-347 105-380 (1255)
5 KOG4194 Membrane glycoprotein 99.9 5.3E-23 1.2E-27 183.7 2.3 263 68-346 155-433 (873)
6 PLN03210 Resistant to P. syrin 99.9 1.7E-20 3.8E-25 191.5 20.4 219 37-268 472-736 (1153)
7 KOG4194 Membrane glycoprotein 99.9 4.5E-22 9.7E-27 177.8 5.8 269 67-347 107-410 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 5.1E-23 1.1E-27 176.2 -1.5 272 67-348 211-547 (565)
9 KOG0444 Cytoskeletal regulator 99.8 2.5E-23 5.4E-28 187.4 -3.9 267 70-349 63-359 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 5.4E-22 1.2E-26 170.0 -8.7 244 79-344 63-312 (565)
11 PLN03210 Resistant to P. syrin 99.8 6.2E-18 1.3E-22 173.0 17.1 243 85-340 590-904 (1153)
12 PRK15387 E3 ubiquitin-protein 99.7 2.2E-16 4.8E-21 151.6 18.1 199 112-345 263-461 (788)
13 PRK15370 E3 ubiquitin-protein 99.7 2.2E-16 4.7E-21 152.4 17.6 244 66-342 182-428 (754)
14 PRK15370 E3 ubiquitin-protein 99.7 2E-16 4.3E-21 152.7 10.9 226 85-347 179-406 (754)
15 KOG0617 Ras suppressor protein 99.7 3.3E-18 7.2E-23 130.8 -3.2 179 109-343 31-213 (264)
16 KOG0618 Serine/threonine phosp 99.6 5.7E-18 1.2E-22 159.1 -2.8 218 111-342 241-489 (1081)
17 PRK15387 E3 ubiquitin-protein 99.6 1.9E-15 4.2E-20 145.2 12.2 237 65-347 204-440 (788)
18 KOG0617 Ras suppressor protein 99.6 8.9E-18 1.9E-22 128.4 -4.0 168 73-254 22-192 (264)
19 KOG4237 Extracellular matrix p 99.6 1.1E-16 2.4E-21 137.4 -0.1 267 68-343 52-360 (498)
20 cd00116 LRR_RI Leucine-rich re 99.6 2.6E-15 5.7E-20 133.7 6.7 249 83-341 22-319 (319)
21 KOG0618 Serine/threonine phosp 99.5 6.3E-16 1.4E-20 145.5 0.1 244 83-346 44-327 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.7E-14 5.8E-19 127.2 6.8 236 104-345 16-294 (319)
23 KOG4237 Extracellular matrix p 99.5 2.2E-15 4.7E-20 129.5 -1.6 253 78-346 38-339 (498)
24 KOG0532 Leucine-rich repeat (L 99.3 2.1E-14 4.6E-19 128.9 -5.1 196 109-339 73-270 (722)
25 KOG4658 Apoptotic ATPase [Sign 99.3 1E-12 2.3E-17 129.1 4.8 248 65-315 526-808 (889)
26 KOG3207 Beta-tubulin folding c 99.3 4.6E-13 9.9E-18 116.8 -0.6 83 107-189 142-232 (505)
27 PF14580 LRR_9: Leucine-rich r 99.1 3.1E-11 6.7E-16 96.0 4.0 131 109-245 17-150 (175)
28 KOG1259 Nischarin, modulator o 99.1 4.3E-11 9.3E-16 100.0 4.0 221 109-346 180-416 (490)
29 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.9E-17 114.8 -2.9 134 109-254 119-253 (722)
30 KOG1259 Nischarin, modulator o 99.1 1.2E-11 2.6E-16 103.4 -1.1 134 110-252 283-416 (490)
31 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.3E-16 106.8 -0.1 211 108-343 118-340 (505)
32 COG4886 Leucine-rich repeat (L 99.0 1.9E-10 4E-15 105.6 5.3 193 138-347 97-295 (394)
33 PF14580 LRR_9: Leucine-rich r 99.0 6E-10 1.3E-14 88.6 5.3 135 73-212 8-148 (175)
34 KOG1909 Ran GTPase-activating 98.9 2.2E-10 4.8E-15 97.6 0.7 138 202-342 155-311 (382)
35 COG4886 Leucine-rich repeat (L 98.8 2E-09 4.2E-14 98.9 4.1 170 109-288 114-288 (394)
36 KOG1909 Ran GTPase-activating 98.8 4.6E-09 1E-13 89.7 4.7 217 109-343 28-284 (382)
37 KOG0531 Protein phosphatase 1, 98.7 1.1E-09 2.4E-14 100.8 -3.2 221 109-343 93-319 (414)
38 KOG0531 Protein phosphatase 1, 98.6 4.3E-09 9.2E-14 97.0 -0.4 79 109-188 116-195 (414)
39 PLN03150 hypothetical protein; 98.6 9.2E-08 2E-12 92.3 8.5 105 135-247 419-527 (623)
40 PF13855 LRR_8: Leucine rich r 98.6 7.9E-08 1.7E-12 62.8 4.0 56 112-167 2-60 (61)
41 PLN03150 hypothetical protein; 98.6 2.1E-07 4.5E-12 89.9 8.5 102 157-266 419-524 (623)
42 PF13855 LRR_8: Leucine rich r 98.5 3.8E-08 8.3E-13 64.3 2.0 61 277-341 1-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.5 6.3E-09 1.4E-13 96.9 -4.4 201 110-346 83-296 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 8.9E-09 1.9E-13 86.3 -3.2 171 158-339 187-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.4 3.2E-08 7E-13 83.0 -1.8 172 112-287 186-373 (419)
46 KOG2982 Uncharacterized conser 98.3 6.2E-08 1.4E-12 81.3 -1.3 41 300-343 223-263 (418)
47 PF12799 LRR_4: Leucine Rich r 98.3 7.4E-07 1.6E-11 53.5 3.3 41 301-346 1-41 (44)
48 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 94.2 -6.9 127 112-248 165-292 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.2 2.5E-06 5.4E-11 51.2 3.8 37 135-171 2-39 (44)
50 PRK15386 type III secretion pr 98.2 7.8E-06 1.7E-10 73.4 8.5 34 277-313 156-189 (426)
51 COG5238 RNA1 Ran GTPase-activa 98.1 7.5E-06 1.6E-10 68.2 5.8 136 109-248 28-198 (388)
52 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-06 5.8E-11 82.4 2.7 103 84-188 122-229 (699)
53 KOG3665 ZYG-1-like serine/thre 98.0 4E-06 8.7E-11 81.2 3.1 106 82-190 146-261 (699)
54 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.7E-10 64.0 5.1 103 137-245 45-150 (233)
55 KOG4579 Leucine-rich repeat (L 98.0 2.2E-06 4.7E-11 64.0 0.7 87 85-174 54-141 (177)
56 PRK15386 type III secretion pr 97.9 5E-05 1.1E-09 68.3 8.3 131 109-266 50-186 (426)
57 KOG2982 Uncharacterized conser 97.9 2.9E-06 6.2E-11 71.6 0.1 82 107-188 67-155 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.8 6.9E-05 1.5E-09 62.6 7.6 209 129-341 25-284 (388)
59 KOG4579 Leucine-rich repeat (L 97.6 5.2E-06 1.1E-10 62.0 -1.7 107 111-219 27-138 (177)
60 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 56.4 5.1 82 107-188 60-149 (233)
61 KOG2123 Uncharacterized conser 97.4 9.9E-06 2.1E-10 67.7 -3.3 79 132-210 39-123 (388)
62 KOG2123 Uncharacterized conser 97.3 1.3E-05 2.9E-10 67.0 -3.5 106 133-242 18-124 (388)
63 KOG2739 Leucine-rich acidic nu 97.2 0.00017 3.7E-09 60.0 1.7 80 109-189 41-126 (260)
64 KOG4341 F-box protein containi 97.1 7.9E-06 1.7E-10 72.0 -6.7 228 108-343 161-415 (483)
65 KOG4341 F-box protein containi 96.9 2.7E-05 5.8E-10 68.8 -5.5 224 112-343 139-386 (483)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00061 1.3E-08 56.8 1.3 82 133-216 42-128 (260)
67 PF13504 LRR_7: Leucine rich r 96.4 0.0016 3.5E-08 30.1 1.1 17 329-345 1-17 (17)
68 KOG1947 Leucine rich repeat pr 96.3 0.00076 1.7E-08 63.5 -0.7 14 273-286 358-371 (482)
69 PF13306 LRR_5: Leucine rich r 96.3 0.018 3.9E-07 43.4 6.8 100 107-212 8-111 (129)
70 PF13306 LRR_5: Leucine rich r 96.1 0.025 5.3E-07 42.7 6.7 117 80-206 8-128 (129)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0036 7.8E-08 31.2 0.9 19 158-176 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0084 1.8E-07 29.8 1.5 19 330-348 1-19 (22)
73 smart00370 LRR Leucine-rich re 93.2 0.04 8.6E-07 28.6 0.7 19 329-347 2-20 (26)
74 smart00369 LRR_TYP Leucine-ric 93.2 0.04 8.6E-07 28.6 0.7 19 329-347 2-20 (26)
75 KOG1947 Leucine rich repeat pr 92.7 0.046 9.9E-07 51.5 1.0 105 178-286 187-304 (482)
76 KOG0473 Leucine-rich repeat pr 91.1 0.01 2.2E-07 48.9 -4.6 86 79-168 37-123 (326)
77 KOG3864 Uncharacterized conser 90.8 0.058 1.3E-06 43.6 -0.5 32 113-144 103-135 (221)
78 smart00369 LRR_TYP Leucine-ric 90.6 0.22 4.8E-06 25.6 1.8 19 156-174 2-20 (26)
79 smart00370 LRR Leucine-rich re 90.6 0.22 4.8E-06 25.6 1.8 19 156-174 2-20 (26)
80 smart00364 LRR_BAC Leucine-ric 88.8 0.22 4.8E-06 25.7 0.9 18 329-346 2-19 (26)
81 KOG3864 Uncharacterized conser 87.7 0.084 1.8E-06 42.7 -1.6 79 134-212 101-184 (221)
82 KOG0473 Leucine-rich repeat pr 87.7 0.018 3.9E-07 47.5 -5.4 83 108-190 39-122 (326)
83 smart00365 LRR_SD22 Leucine-ri 84.2 0.46 1E-05 24.6 0.6 19 301-319 2-20 (26)
84 PF13516 LRR_6: Leucine Rich r 82.7 0.58 1.3E-05 23.5 0.6 15 329-343 2-16 (24)
85 KOG4308 LRR-containing protein 81.6 0.032 7E-07 52.2 -7.6 41 301-343 262-304 (478)
86 KOG3763 mRNA export factor TAP 75.8 2.5 5.3E-05 39.8 2.9 39 275-314 242-283 (585)
87 KOG4308 LRR-containing protein 74.8 0.063 1.4E-06 50.3 -7.7 161 82-248 113-303 (478)
88 smart00367 LRR_CC Leucine-rich 66.7 2.6 5.6E-05 21.6 0.6 13 328-340 1-13 (26)
89 smart00368 LRR_RI Leucine rich 66.7 2.9 6.4E-05 21.9 0.8 14 329-342 2-15 (28)
90 KOG3763 mRNA export factor TAP 38.4 18 0.00039 34.3 1.5 65 275-343 216-284 (585)
91 PF07723 LRR_2: Leucine Rich R 26.0 61 0.0013 16.6 1.6 13 303-315 2-14 (26)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.93 E-value=5.3e-26 Score=221.48 Aligned_cols=329 Identities=20% Similarity=0.212 Sum_probs=205.9
Q ss_pred CCCC--CCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHhcCC------------ccchhhHHHHHHHHhc-----
Q 037732 1 YTAI--ASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM------------FSMHDVVRDVAISIAS----- 61 (350)
Q Consensus 1 ~~~~--i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~h~l~~d~~~~~~~----- 61 (350)
||++ |++++++.+|+||||+++.+..+.+++.+.+|+++|+.+++ |+|||+++||+.+++.
T Consensus 422 FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~ 501 (889)
T KOG4658|consen 422 FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQ 501 (889)
T ss_pred CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccccc
Confidence 6777 99999999999999998866556677777788888777776 9999999999999999
Q ss_pred cccceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCc--CcCCCc-cccCcccccE
Q 037732 62 TEQNVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN--LLSLPS-SLGLLSNLQN 138 (350)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~-~l~~l~~L~~ 138 (350)
+|+.+.. .+......|...+...+|+..+ -++....++.. ..+++|++|-+.++. +..++. .|..++.|++
T Consensus 502 ~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~---~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrV 575 (889)
T KOG4658|consen 502 EENQIVS-DGVGLSEIPQVKSWNSVRRMSL---MNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRV 575 (889)
T ss_pred ccceEEE-CCcCccccccccchhheeEEEE---eccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEE
Confidence 6663332 2234555666666677777777 33334444442 246678888887774 444444 3667888888
Q ss_pred EEecCCC-CCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732 139 LSLYNCK-LLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 139 L~l~~~~-l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
||+++|. +.. |..++.+.+|++|+++++.+..+|.++++++.|.+|++..+.....+|. +...+++|++|.+.....
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSAL 654 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccc
Confidence 8888774 455 7888888888888888888888888888888888888887666555543 356688888887765441
Q ss_pred CcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCcc----EEEE---EEcCcccccccCccceEEEEeCCC
Q 037732 217 DKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLE----TFKI---LIGGVWGWEYADIWCREFKIDLDS 288 (350)
Q Consensus 217 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~----~L~l---~~~~~~~~~~~~~~L~~L~l~~~~ 288 (350)
.. .......+.++.+|+.+.+..... .+...+ ....|. .+.+ ........+..+.+|+.|.+....
T Consensus 655 ~~-----~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 655 SN-----DKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred cc-----chhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCC
Confidence 11 122333455566666666644443 111111 222222 1111 111122345566777777777644
Q ss_pred cccchH-----HHHH-HhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 289 KIRLKD-----GLIL-KLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 289 ~~~~~~-----~~~~-~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
..+... .... .|+++..+.+. ++...+.+. +. .-.|+|+.|.+..|+..+.|..
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~--~~~~~r~l~-~~--~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSIL--NCHMLRDLT-WL--LFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhh--ccccccccc-hh--hccCcccEEEEecccccccCCC
Confidence 332110 0111 14455555554 332221121 12 2358888888888877776653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.6e-23 Score=212.66 Aligned_cols=246 Identities=22% Similarity=0.255 Sum_probs=129.0
Q ss_pred cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecCCCCCC--chhhhccC
Q 037732 80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLK 156 (350)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~ 156 (350)
+..+++|+.|++ +.+...+.+|..++..+.+|++|++++|.+.. +|. +.+++|++|++++|.+.. +..++.++
T Consensus 89 ~~~l~~L~~L~L--s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 89 IFRLPYIQTINL--SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HhCCCCCCEEEC--CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 446677777777 55555556776666566777777776666542 332 234445555555554443 34444555
Q ss_pred CCcEEEecCCCCc-cccccccCCCCccEEeccCCCCCC------------------------ccCcchhCCCCCCcEEEc
Q 037732 157 KLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELE------------------------VIPPNILSNLSHLEELYM 211 (350)
Q Consensus 157 ~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~------------------------~~~~~~l~~l~~L~~L~l 211 (350)
+|++|++++|.+. .+|..+.++++|++|++++|.... .+|.. ++++++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 5555555544433 344444444445555444443333 34433 344444555554
Q ss_pred CCCCCCcchhhhccccccchhhcCCCceeEEEecCCC-CCCccc-ccCCccEEEEEEcC----cccccccCccceEEEEe
Q 037732 212 GPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TFPRGL-FLEKLETFKILIGG----VWGWEYADIWCREFKID 285 (350)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~ 285 (350)
++|.+ .+..|..++++++|+.|+++.|.+. .+|..+ .+++|++|++..+. .+.++..+++|+.|+++
T Consensus 244 ~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 244 VYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred cCcee-------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 44444 3344455555555555555555543 344444 45555665554332 22344555666666666
Q ss_pred CCCcc-cchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732 286 LDSKI-RLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
+|... ..|..+.. +++|+.|++++|.+.+. +|..+ ..+++|+.|++++|.++
T Consensus 317 ~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~p~~l--~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 317 SNNFTGKIPVALTS-LPRLQVLQLWSNKFSGE--IPKNL--GKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CCccCCcCChhHhc-CCCCCEEECcCCCCcCc--CChHH--hCCCCCcEEECCCCeeE
Confidence 54433 23333333 46666666666666542 55555 45666666666666655
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=9.7e-23 Score=206.93 Aligned_cols=248 Identities=22% Similarity=0.261 Sum_probs=165.3
Q ss_pred CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732 81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK 157 (350)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~ 157 (350)
..+++|++|++ +.+.....+|.. +..+++|++|++++|.+. .+|..++++++|++|++++|.+.. |..++++++
T Consensus 137 ~~l~~L~~L~L--s~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 137 GSIPNLETLDL--SNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213 (968)
T ss_pred cccCCCCEEEC--cCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence 35667777777 555555566665 357888888888888776 577788888888888888888765 677888888
Q ss_pred CcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC
Q 037732 158 LAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH 236 (350)
Q Consensus 158 L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 236 (350)
|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+ .+..|..+.++++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l-------~~~~p~~l~~l~~ 285 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL-------SGPIPPSIFSLQK 285 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee-------eccCchhHhhccC
Confidence 888888888776 67778888888888888887666667766 78888888888888776 4455666666667
Q ss_pred CceeEEEecCCC-CCCccc-ccCCccEEEEEEcC----cccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeec
Q 037732 237 LISLELQIQDVN-TFPRGL-FLEKLETFKILIGG----VWGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLS 309 (350)
Q Consensus 237 L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~ 309 (350)
|+.|+++.|.+. .+|..+ .+++|+.|++..+. .+..+..+++|+.|++++|... .+|..+.. +++|+.|+++
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls 364 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLS 364 (968)
T ss_pred cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECC
Confidence 777777666654 344444 45566666654332 2223445555555555554332 33333332 2455555555
Q ss_pred ccc------------------------ccchhhhhhhhcccCcCcceEEEEeCccceec
Q 037732 310 YLE------------------------EQDVNYFVNELVKVGPSQLKHLYIRGSHLTLN 344 (350)
Q Consensus 310 ~n~------------------------l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 344 (350)
+|. +.+. +|..+ ..+++|+.|++++|+++..
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--~p~~~--~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGE--IPKSL--GACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEeccc--CCHHH--hCCCCCCEEECcCCEeeeE
Confidence 444 4432 44455 5677888888888877743
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=9e-24 Score=190.20 Aligned_cols=265 Identities=20% Similarity=0.240 Sum_probs=220.5
Q ss_pred cceeeecccccccccc-cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec
Q 037732 64 QNVFSATEEQTNLLLE-VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY 142 (350)
Q Consensus 64 ~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 142 (350)
-.++.++.+++.++|. +...+++-.|++ +++.+.++|.++|.++..|-+|+|++|.+..+|+.+.++.+|+.|+++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNL---S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNL---SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEc---ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 3456667778888874 446677888888 455678888888888888889999999888899988999999999999
Q ss_pred CCCCCC--chhhhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCc
Q 037732 143 NCKLLD--ITVIRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDK 218 (350)
Q Consensus 143 ~~~l~~--~~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (350)
+|++.- +..+..+++|++|.+++++-+ .+|.++..+.+|+.++++. +.+..+|.. +.++++|+.|++++|.++.
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCcCceee
Confidence 988765 677777888888988887443 7888999999999999988 667778887 7899999999999998854
Q ss_pred chhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEE-----EcCcccccccCccceEEEEeCCCcccc
Q 037732 219 WEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKIL-----IGGVWGWEYADIWCREFKIDLDSKIRL 292 (350)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~ 292 (350)
.. ...+...+|++|.++.|.+..+|+.+ .+++|+.|-.. ..++++=++.+..|+.+..++|...-.
T Consensus 260 L~--------~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV 331 (1255)
T KOG0444|consen 260 LN--------MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV 331 (1255)
T ss_pred ee--------ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence 33 34566778999999999999999998 78888887653 445677778888999999999999999
Q ss_pred hHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 293 KDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
|+++.+ |+.|+.|.|++|++.. +|..+ +-++.|+.|++..|+-...|+.
T Consensus 332 PEglcR-C~kL~kL~L~~NrLiT---LPeaI--HlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 332 PEGLCR-CVKLQKLKLDHNRLIT---LPEAI--HLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred chhhhh-hHHHHHhcccccceee---chhhh--hhcCCcceeeccCCcCccCCCC
Confidence 999987 7999999999999988 78888 7799999999999998888875
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.3e-23 Score=183.70 Aligned_cols=263 Identities=16% Similarity=0.167 Sum_probs=188.1
Q ss_pred eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCC
Q 037732 68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNC 144 (350)
Q Consensus 68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~ 144 (350)
.++.+.+..++ .++.-.+++.|++ .++.+..+..+.|..+.+|..|.|+.|.++.+|. .|.++++|+.|+|.+|
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~L---a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNL---ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEee---ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 34445555554 3444567788888 4455566665556777888888888888887766 4566888888888888
Q ss_pred CCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732 145 KLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV 221 (350)
Q Consensus 145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 221 (350)
.+.. .-.+..+++|+.|.+..|.+..+.. .+..|.++++|+++. +.+..+..+-+.+++.|+.|+++.|.+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI----- 305 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAI----- 305 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhh-----
Confidence 7766 3556778888888888888887765 467888888888888 445555544477888888888888887
Q ss_pred hhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCccc---c
Q 037732 222 EVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIR---L 292 (350)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~---~ 292 (350)
....++++.-.++|+.|+++.|.+..++++. .+..|+.|++..+.+-. .+..+.+|+.|++++|.... .
T Consensus 306 --~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 --QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred --heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 5566677778888888888888888877766 57788888887665432 35677888888888864433 2
Q ss_pred hHHHHHHhcccceeeeccccccchhhhh-hhhcccCcCcceEEEEeCccceeccC
Q 037732 293 KDGLILKLEGIEDLWLSYLEEQDVNYFV-NELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
....+..+++|+.|++.+|++.. ++ .++ .++++|++|+|.+|.+..+-+
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~---I~krAf--sgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKS---IPKRAF--SGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred chhhhccchhhhheeecCceeee---cchhhh--ccCcccceecCCCCcceeecc
Confidence 22234447888888888888877 44 445 678888888888888776543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.7e-20 Score=191.52 Aligned_cols=219 Identities=21% Similarity=0.322 Sum_probs=135.5
Q ss_pred HHHHHhcCC-------ccchhhHHHHHHHHhcccc------ceeeeccc----------------------ccccc----
Q 037732 37 VHKLKACCM-------FSMHDVVRDVAISIASTEQ------NVFSATEE----------------------QTNLL---- 77 (350)
Q Consensus 37 ~~~l~~~~~-------~~~h~l~~d~~~~~~~~~~------~~~~~~~~----------------------~~~~~---- 77 (350)
++.|+.+++ +.|||++|+|+.+++.++. .++....+ .+..+
T Consensus 472 l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 472 LKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred hHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 555666666 8999999999999987542 11111100 00000
Q ss_pred cccCCCCCccEEEecccC----CccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhh
Q 037732 78 LEVVECPQLELLFICADK----ESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVI 152 (350)
Q Consensus 78 ~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l 152 (350)
..+.++++|+.|.++... +.....+|..+..-..+|+.|.+.++.+..+|..+ ...+|+.|+++++.+.. +..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 023456777777762111 01122345443322345777777777777777766 45777888888777766 5666
Q ss_pred hccCCCcEEEecCC-CCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccch
Q 037732 153 RDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL 231 (350)
Q Consensus 153 ~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 231 (350)
..+++|+.++++++ .+..+| .+..+++|+.|++++|..+..+|.. ++++++|+.|++++|.. .+.+|..+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~-------L~~Lp~~i 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN-------LEILPTGI 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC-------cCccCCcC
Confidence 77778888888766 455666 4667778888888777777777776 67777888888877654 33444433
Q ss_pred hhcCCCceeEEEecC-CCCCCcccccCCccEEEEEEcC
Q 037732 232 HELKHLISLELQIQD-VNTFPRGLFLEKLETFKILIGG 268 (350)
Q Consensus 232 ~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~~~ 268 (350)
++++|+.|++++|. +..+|.. ..+|+.|.+..+.
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~ 736 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA 736 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc
Confidence 56777788777764 3344433 4566666664433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.5e-22 Score=177.84 Aligned_cols=269 Identities=18% Similarity=0.212 Sum_probs=181.0
Q ss_pred eeecccccccccccCCC-CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCC
Q 037732 67 FSATEEQTNLLLEVVEC-PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNC 144 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~ 144 (350)
+.+..+.+..+|.+... .+++.|.+ .++.+.++...-.+.++.|++|||+.|.+..+|. +|..-.++++|+|++|
T Consensus 107 v~l~~N~Lt~IP~f~~~sghl~~L~L---~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 107 VNLNKNELTRIPRFGHESGHLEKLDL---RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN 183 (873)
T ss_pred eeeccchhhhcccccccccceeEEee---eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc
Confidence 44566677777766543 44888888 5666666666556677888888888888776655 3555567888888888
Q ss_pred CCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCC-----------------------CCCccCcc
Q 037732 145 KLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCM-----------------------ELEVIPPN 198 (350)
Q Consensus 145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~-----------------------~~~~~~~~ 198 (350)
+++. ...+..+.+|-+|.++.|+++.+|.. +.++++|+.|++..|. .+..+..+
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 8776 45666666777777777777777763 4557777777776622 12222222
Q ss_pred hhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----c
Q 037732 199 ILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----W 272 (350)
Q Consensus 199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----~ 272 (350)
.+..|..+++|+++.|++. ..-..++.++..|+.|+++.|.+..+...- ++++|+.|++..+.+-+ .
T Consensus 264 ~Fy~l~kme~l~L~~N~l~-------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQ-------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred ceeeecccceeecccchhh-------hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 3334444555555544442 222345667777778888888776554333 67888888887666533 4
Q ss_pred cccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccch-hhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 273 EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDV-NYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
+..+..|+.|+++.|....+.++.+..+.+|++|+|++|.+... ++-...+ .++++|++|++.||++..+|.+
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f--~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF--NGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh--ccchhhhheeecCceeeecchh
Confidence 56677788888888888887777676678889999988887643 1112233 6699999999999999888863
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=5.1e-23 Score=176.23 Aligned_cols=272 Identities=17% Similarity=0.242 Sum_probs=186.8
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL 146 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l 146 (350)
.+...+.+..+|++++|+.|..+.+ +.+.+..+|+...+.+.++.+||+..|.++++|..++.+.+|.+||+++|.+
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~---g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHV---GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHh---cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 4456668888888888888888888 6666777888777788888888888888888888888888888888888888
Q ss_pred CC-chhhhccCCCcEEEecCCCCccccccccCCC------------------------------------------CccE
Q 037732 147 LD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELT------------------------------------------LLRL 183 (350)
Q Consensus 147 ~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~------------------------------------------~L~~ 183 (350)
+. |.+++++ +|++|.+.||.++.+-.++-++. +.+.
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 88 7888888 88888888887654433322221 1222
Q ss_pred EeccCCCCCCccCcchhCCCC--CCcEEEcCCCCCCcchh----------------hhccccccchhhcCCCceeEEEec
Q 037732 184 LDLRDCMELEVIPPNILSNLS--HLEELYMGPRSFDKWEV----------------EVEGVKNASLHELKHLISLELQIQ 245 (350)
Q Consensus 184 L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~----------------~~~~~~~~~l~~l~~L~~L~l~~~ 245 (350)
|+++. ..++.+|.+++..-. -....++++|++.+.+. ...+.+|..+..+++|..|++++|
T Consensus 367 L~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 367 LDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred hcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 22222 222223322211111 12233333333332221 111144566777888899999999
Q ss_pred CCCCCCccc-ccCCccEEEEEEcC---cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhh
Q 037732 246 DVNTFPRGL-FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVN 321 (350)
Q Consensus 246 ~~~~l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 321 (350)
.+.++|..+ .+..|+.++++.+. .+.+.-....++.+-.+.+....++..-...+.+|..|+|.+|.+.. +|+
T Consensus 446 ~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~---IPp 522 (565)
T KOG0472|consen 446 LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ---IPP 522 (565)
T ss_pred hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh---CCh
Confidence 888998887 66778888887664 23333344556666666677777766533457999999999999988 899
Q ss_pred hhcccCcCcceEEEEeCccceeccCCC
Q 037732 322 ELVKVGPSQLKHLYIRGSHLTLNPAES 348 (350)
Q Consensus 322 ~l~~~~~~~L~~L~l~~~~~~~~p~~~ 348 (350)
.+ +++.+|++|+++||||...|..|
T Consensus 523 ~L--gnmtnL~hLeL~gNpfr~Pr~~i 547 (565)
T KOG0472|consen 523 IL--GNMTNLRHLELDGNPFRQPRHQI 547 (565)
T ss_pred hh--ccccceeEEEecCCccCCCHHHH
Confidence 99 89999999999999999544444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.5e-23 Score=187.42 Aligned_cols=267 Identities=18% Similarity=0.220 Sum_probs=201.8
Q ss_pred ccccccccc-ccCCCCCccEEEecccCCcc-ccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCC
Q 037732 70 TEEQTNLLL-EVVECPQLELLFICADKESS-SLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL 147 (350)
Q Consensus 70 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~ 147 (350)
..+++..+- ++..++.||.+.+ ..++. ..-+|..+| .+..|+.|+|++|.+...|..+...+++-+|++++|++.
T Consensus 63 ~HN~L~~vhGELs~Lp~LRsv~~--R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 63 AHNQLISVHGELSDLPRLRSVIV--RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhhhhHhhhhhhccchhhHHHhh--hccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc
Confidence 344444333 5667788888888 34433 234788877 799999999999999999999989999999999999988
Q ss_pred C-c-hhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccC-cchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732 148 D-I-TVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIP-PNILSNLSHLEELYMGPRSFDKWEVEVE 224 (350)
Q Consensus 148 ~-~-~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 224 (350)
. | +-+-++..|-+||+++|++..+|+.+..+.+|++|.+++|. +..+. .. +..+++|+.|.+++.+.+ .
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LPsmtsL~vLhms~TqRT------l 211 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LPSMTSLSVLHMSNTQRT------L 211 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Cccchhhhhhhcccccch------h
Confidence 8 5 45668888999999999999999999999999999998844 33222 22 566778888888876653 4
Q ss_pred cccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCccc---ccccCccceEEEEeCCCcccchHHHHHHh
Q 037732 225 GVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKL 300 (350)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 300 (350)
..+|.++..+.+|..++++.|.+..+|.-+ .+++|+.|+++.+.+-. ....-.+|++|++++|....+|.++.+.
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL- 290 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL- 290 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-
Confidence 578888999999999999999998888887 78899999997766533 2344567888888888888888888774
Q ss_pred cccceeeeccccccchhhhhhhhcc---------------------cCcCcceEEEEeCccceeccCCCC
Q 037732 301 EGIEDLWLSYLEEQDVNYFVNELVK---------------------VGPSQLKHLYIRGSHLTLNPAESN 349 (350)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~l~~---------------------~~~~~L~~L~l~~~~~~~~p~~~~ 349 (350)
++|+.|.+.+|.++= +++|..++. ..|+.|+.|.|+.|++.++|+.|-
T Consensus 291 ~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH 359 (1255)
T ss_pred HHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhh
Confidence 788888887776531 124443310 457888888888888888888763
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=5.4e-22 Score=170.03 Aligned_cols=244 Identities=20% Similarity=0.222 Sum_probs=196.2
Q ss_pred ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCC
Q 037732 79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKK 157 (350)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~ 157 (350)
.+.++..+.++.+ ..+...+.|..+ ..+..+..++++.|.+..+|+.++.+..|+.|+.+.|.+.. +++++.+-.
T Consensus 63 dl~nL~~l~vl~~---~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 63 DLKNLACLTVLNV---HDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred hhhcccceeEEEe---ccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 4456667777777 344456677765 36788888888988888888888888889999998888877 888888888
Q ss_pred CcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCC
Q 037732 158 LAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHL 237 (350)
Q Consensus 158 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 237 (350)
|+.++..+|++..+|+++..+.++..+++.+ +.+..+|+..+ +|+.|++|+...|-. +.+|+.++.|.+|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~N~L--------~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHI-AMKRLKHLDCNSNLL--------ETLPPELGGLESL 208 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHH-HHHHHHhcccchhhh--------hcCChhhcchhhh
Confidence 9988888888989998888888888888888 66677777644 488899988765544 5778889999999
Q ss_pred ceeEEEecCCCCCCccc-ccCCccEEEEEEcCcc---c-ccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccc
Q 037732 238 ISLELQIQDVNTFPRGL-FLEKLETFKILIGGVW---G-WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLE 312 (350)
Q Consensus 238 ~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~---~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 312 (350)
+-|++..|++..+| ++ .+..|+++....+.+. + ....++++..|++..|...+.|+.+.. +.+|+.||+++|.
T Consensus 209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-LrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-LRSLERLDLSNND 286 (565)
T ss_pred HHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-hhhhhhhcccCCc
Confidence 99999999999888 55 7888888877655432 2 355788899999999999999988775 4889999999999
Q ss_pred ccchhhhhhhhcccCcCcceEEEEeCccceec
Q 037732 313 EQDVNYFVNELVKVGPSQLKHLYIRGSHLTLN 344 (350)
Q Consensus 313 l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 344 (350)
++. +|.++ +++ .|+.|-+.|||+.++
T Consensus 287 is~---Lp~sL--gnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 287 ISS---LPYSL--GNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred ccc---CCccc--ccc-eeeehhhcCCchHHH
Confidence 988 78788 677 899999999988664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=6.2e-18 Score=172.97 Aligned_cols=243 Identities=20% Similarity=0.225 Sum_probs=135.4
Q ss_pred CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC-CCCchhhhccCCCcEEEe
Q 037732 85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK-LLDITVIRDLKKLAVLCL 163 (350)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~~~~l~~l~~L~~L~l 163 (350)
+||.|.+ .+.....+|..+ ...+|+.|+++++.+..+|..+..+++|++|+++++. +..++.++.+++|+.|++
T Consensus 590 ~Lr~L~~---~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRW---DKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEe---cCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 5666666 334455566543 4566677777766666666666666677777776654 333445666666666666
Q ss_pred cCC-CCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCC---------------------CCcchh
Q 037732 164 RGS-DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS---------------------FDKWEV 221 (350)
Q Consensus 164 ~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------------------~~~~~~ 221 (350)
.+| .+..+|..++.+++|+.|++++|..+..+|.. + ++++|+.|++++|. +..++.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 665 45566666666666666666666666666654 1 45555555555442 211110
Q ss_pred h----------------------------------------------hccccccchhhcCCCceeEEEec-CCCCCCccc
Q 037732 222 E----------------------------------------------VEGVKNASLHELKHLISLELQIQ-DVNTFPRGL 254 (350)
Q Consensus 222 ~----------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~ 254 (350)
. ....+|.+++++++|+.|++++| .+..+|...
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 0 01123444445555555555544 244444444
Q ss_pred ccCCccEEEEEEcCcccc-cccCccceEEEEeCCCcccchHHHHHHhcccceeeecc-ccccchhhhhhhhcccCcCcce
Q 037732 255 FLEKLETFKILIGGVWGW-EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSY-LEEQDVNYFVNELVKVGPSQLK 332 (350)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~~~~~~L~ 332 (350)
.+++|+.|++..+..... .....+|+.|+++++....+|.++.. +++|+.|++++ +.+.. ++..+ ..+++|+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~-l~~L~~L~L~~C~~L~~---l~~~~--~~L~~L~ 896 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK-FSNLSFLDMNGCNNLQR---VSLNI--SKLKHLE 896 (1153)
T ss_pred CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc-CCCCCEEECCCCCCcCc---cCccc--ccccCCC
Confidence 445555555544432221 12234566677766666667766554 47777777774 23333 55444 5567777
Q ss_pred EEEEeCcc
Q 037732 333 HLYIRGSH 340 (350)
Q Consensus 333 ~L~l~~~~ 340 (350)
.+++.+|+
T Consensus 897 ~L~l~~C~ 904 (1153)
T PLN03210 897 TVDFSDCG 904 (1153)
T ss_pred eeecCCCc
Confidence 77777774
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=2.2e-16 Score=151.62 Aligned_cols=199 Identities=16% Similarity=0.106 Sum_probs=122.3
Q ss_pred cceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCC
Q 037732 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCME 191 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 191 (350)
+|+.|++++|.+..+|..+ ..|+.|++++|.++..+. ..++|+.|++++|++..+|... .+|+.|.+++ +.
T Consensus 263 sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~ 333 (788)
T PRK15387 263 GLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQ 333 (788)
T ss_pred ccceeeccCCchhhhhhch---hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---cccccccccc-Cc
Confidence 4444444444444433311 234455555555544211 1245666666666555555322 2344555555 33
Q ss_pred CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc
Q 037732 192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271 (350)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 271 (350)
+..+|.. ..+|+.|++++|.+... |.. ..+|+.|++++|.+..+|.. ..+|+.|++..+.+..
T Consensus 334 L~~LP~l----p~~Lq~LdLS~N~Ls~L--------P~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 334 LTSLPTL----PSGLQELSVSDNQLASL--------PTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS 396 (788)
T ss_pred ccccccc----ccccceEecCCCccCCC--------CCC---CcccceehhhccccccCccc--ccccceEEecCCcccC
Confidence 3344431 14677788877776432 221 23567777778877777765 4678888887666544
Q ss_pred ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732 272 WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
.-...++|+.|++++|....+|.. +.+|+.|++++|+++. +|..+ ..+++|+.|+|++|++++..
T Consensus 397 LP~l~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~---LP~sl--~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 397 LPVLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTR---LPESL--IHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCCcccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccc---cChHH--hhccCCCeEECCCCCCCchH
Confidence 333456789999999888887742 3578889999999987 78777 67899999999999988643
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.2e-16 Score=152.40 Aligned_cols=244 Identities=15% Similarity=0.166 Sum_probs=182.3
Q ss_pred eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732 66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 145 (350)
.+.++...+..+|... .++++.|++ + ++....+|..++ .+|+.|++++|.++.+|..+. .+|+.|++++|.
T Consensus 182 ~L~L~~~~LtsLP~~I-p~~L~~L~L--s-~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILGLTTIPACI-PEQITTLIL--D-NNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEEeCCCCcCcCCccc-ccCCcEEEe--c-CCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 3455566677777421 257899999 4 445667887653 589999999999988887654 479999999999
Q ss_pred CCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732 146 LLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE 224 (350)
Q Consensus 146 l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 224 (350)
+.. |..+. .+|+.|++++|++..+|..+. ++|+.|++++| .+..+|.. + .++|+.|++++|.+...
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L----- 319 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTAL----- 319 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccC-----
Confidence 888 55554 589999999999998887654 58999999984 56667764 2 24788999998887433
Q ss_pred cccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccccc-ccCccceEEEEeCCCcccchHHHHHHhccc
Q 037732 225 GVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWE-YADIWCREFKIDLDSKIRLKDGLILKLEGI 303 (350)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 303 (350)
|..+ .++|+.|+++.|.+..+|..+ .++|+.|++..+.+...- .-.++|+.|++++|....+|..+. ++|
T Consensus 320 ---P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~sL 390 (754)
T PRK15370 320 ---PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP---AAL 390 (754)
T ss_pred ---Cccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH---HHH
Confidence 2222 257999999999998888765 478999999877654221 124689999999999888887654 479
Q ss_pred ceeeeccccccchhh-hhhhhcccCcCcceEEEEeCccce
Q 037732 304 EDLWLSYLEEQDVNY-FVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 304 ~~L~L~~n~l~~~~~-~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
+.|++++|+++.++. ++... ..++++..|++.+|+++
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~--~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFR--GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcccCchhHHHHh--hcCCCccEEEeeCCCcc
Confidence 999999999987432 23333 45689999999999985
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2e-16 Score=152.69 Aligned_cols=226 Identities=20% Similarity=0.209 Sum_probs=172.0
Q ss_pred CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEe
Q 037732 85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCL 163 (350)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l 163 (350)
+...|.+ .+.....+|..+ .++++.|++++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|++
T Consensus 179 ~~~~L~L---~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRL---KILGLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEe---CCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 4567888 334456677654 3579999999999999888664 589999999999888 55443 47999999
Q ss_pred cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEE
Q 037732 164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQ 243 (350)
Q Consensus 164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 243 (350)
++|.+..+|..+. .+|+.|++++ +.+..+|.. +. .+|+.|++++|.+..+ |..+. ++|+.|+++
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L--------P~~lp--~sL~~L~Ls 312 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFH-NKISCLPEN-LP--EELRYLSVYDNSIRTL--------PAHLP--SGITHLNVQ 312 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcC-CccCccccc-cC--CCCcEEECCCCccccC--------cccch--hhHHHHHhc
Confidence 9999999987664 5899999987 566678875 32 5899999999987533 32222 468899999
Q ss_pred ecCCCCCCcccccCCccEEEEEEcCcccccc-cCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732 244 IQDVNTFPRGLFLEKLETFKILIGGVWGWEY-ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE 322 (350)
Q Consensus 244 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 322 (350)
+|.+..+|..+ .++|+.|.+..+.+..+-. -+++|+.|++++|....+|..+ .++|+.|+|++|.++. +|..
T Consensus 313 ~N~Lt~LP~~l-~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~---LP~~ 385 (754)
T PRK15370 313 SNSLTALPETL-PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTN---LPEN 385 (754)
T ss_pred CCccccCCccc-cccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCC---CCHh
Confidence 99998888765 4688888887665433211 2368999999999888888654 3789999999999987 6665
Q ss_pred hcccCcCcceEEEEeCccceeccCC
Q 037732 323 LVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 323 l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
+ .+.|+.|++++|.++.+|..
T Consensus 386 l----~~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 386 L----PAALQIMQASRNNLVRLPES 406 (754)
T ss_pred H----HHHHHHHhhccCCcccCchh
Confidence 5 24799999999999988863
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.3e-18 Score=130.75 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=104.8
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 187 (350)
++.+++.|.+++|.++.+|+.+..+.+|+.|++++|++.+ |.+++.+++|+.|++.-|++..+|.++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf------------ 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF------------ 98 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc------------
Confidence 3455555555555555555555555555555555555544 444555555555554444444444444
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG 267 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~ 267 (350)
+.++.|+.|++..|... ...+|..|-.|.-|+-|+++.|++.-+|..+
T Consensus 99 -------------gs~p~levldltynnl~------e~~lpgnff~m~tlralyl~dndfe~lp~dv------------- 146 (264)
T KOG0617|consen 99 -------------GSFPALEVLDLTYNNLN------ENSLPGNFFYMTTLRALYLGDNDFEILPPDV------------- 146 (264)
T ss_pred -------------CCCchhhhhhccccccc------cccCCcchhHHHHHHHHHhcCCCcccCChhh-------------
Confidence 45555555555544442 3355566666777777788888777777764
Q ss_pred CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCc---CcceEEEEeCcccee
Q 037732 268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGP---SQLKHLYIRGSHLTL 343 (350)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~---~~L~~L~l~~~~~~~ 343 (350)
+.+++|+.|.+..|+..++|..++. +..|++|++.+|+++- +|+.+ +++ -+=+.+++..|||..
T Consensus 147 ------g~lt~lqil~lrdndll~lpkeig~-lt~lrelhiqgnrl~v---lppel--~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 147 ------GKLTNLQILSLRDNDLLSLPKEIGD-LTRLRELHIQGNRLTV---LPPEL--ANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ------hhhcceeEEeeccCchhhCcHHHHH-HHHHHHHhcccceeee---cChhh--hhhhhhhhHHHHhhhhCCCCC
Confidence 2445566666666777777777776 4899999999999887 56555 222 222445555566543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=5.7e-18 Score=159.11 Aligned_cols=218 Identities=24% Similarity=0.297 Sum_probs=143.4
Q ss_pred CcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732 111 IQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 189 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 189 (350)
.+++.++++.+.+..+|..++.+.+|+.++..+|.+.. |..+...++|++|.+..|.+..+|......+.|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~- 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS- 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-
Confidence 34555555555555555545555555555555555544 4445555555555555555555554444455555555544
Q ss_pred CCCCccCcchh-------------------------CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe
Q 037732 190 MELEVIPPNIL-------------------------SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI 244 (350)
Q Consensus 190 ~~~~~~~~~~l-------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 244 (350)
+.+..+|..++ ..++.|+.|++.+|.+ .+..-..+.++++|+.|+++.
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L-------td~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL-------TDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc-------cccchhhhccccceeeeeecc
Confidence 33333333221 2234566666776666 344445688999999999999
Q ss_pred cCCCCCCccc--ccCCccEEEEEEcC---cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhh
Q 037732 245 QDVNTFPRGL--FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYF 319 (350)
Q Consensus 245 ~~~~~l~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 319 (350)
|.+..+|+.. .+..|++|.++.+. ++..+..++.|++|...+|.+..+| .+.. ++.|+.+|++.|+++.. .+
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~-l~qL~~lDlS~N~L~~~-~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQ-LPQLKVLDLSCNNLSEV-TL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhh-cCcceEEecccchhhhh-hh
Confidence 9999999887 67888888887765 4456778999999999999999999 4444 69999999999999875 23
Q ss_pred hhhhcccCcCcceEEEEeCccce
Q 037732 320 VNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 320 ~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
+... ..|+|++||++||...
T Consensus 470 ~~~~---p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 470 PEAL---PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhC---CCcccceeeccCCccc
Confidence 4333 3389999999999853
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.9e-15 Score=145.24 Aligned_cols=237 Identities=19% Similarity=0.174 Sum_probs=157.5
Q ss_pred ceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCC
Q 037732 65 NVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 144 (350)
..+.++...+..+|... .++++.|.+ . .+....+|. ..++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L--~-~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVI--P-DNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEc--c-CCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 34445555666666422 236777777 3 333445553 246777777777777766642 356777777777
Q ss_pred CCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732 145 KLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE 224 (350)
Q Consensus 145 ~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 224 (350)
.+..++. ...+|+.|++++|++..+|.. .++|+.|++++| .+..+|.. ..+|+.|++++|.+..
T Consensus 273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~------ 336 (788)
T PRK15387 273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS------ 336 (788)
T ss_pred chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc------
Confidence 7666222 124577777777777777652 366788888774 44455541 2346677777776632
Q ss_pred cccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccc
Q 037732 225 GVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIE 304 (350)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 304 (350)
+|.. ..+|+.|++++|.+..+|.. ..+|+.|++..+.+..+-..+.+|+.|++++|....+|.. .++|+
T Consensus 337 --LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~ 405 (788)
T PRK15387 337 --LPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELK 405 (788)
T ss_pred --cccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCC
Confidence 2221 14789999999999888875 5678888876665544333446799999999888877742 46899
Q ss_pred eeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 305 DLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 305 ~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
.|++++|.++. +|.. ..+|+.|++++|.++.+|..
T Consensus 406 ~LdLS~N~Lss---IP~l-----~~~L~~L~Ls~NqLt~LP~s 440 (788)
T PRK15387 406 ELMVSGNRLTS---LPML-----PSGLLSLSVYRNQLTRLPES 440 (788)
T ss_pred EEEccCCcCCC---CCcc-----hhhhhhhhhccCcccccChH
Confidence 99999999987 5532 25788999999999999874
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=8.9e-18 Score=128.42 Aligned_cols=168 Identities=22% Similarity=0.306 Sum_probs=146.3
Q ss_pred ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chh
Q 037732 73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITV 151 (350)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~ 151 (350)
.+..++.+..+++...|.+ + .+....+|..+. .+.+|++|++++|+++.+|.+++.+++|+.|+++-|++.. |..
T Consensus 22 sf~~~~gLf~~s~ITrLtL--S-HNKl~~vppnia-~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTL--S-HNKLTVVPPNIA-ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred cHhhcccccchhhhhhhhc--c-cCceeecCCcHH-HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence 4455666778888888988 4 444566777654 8999999999999999999999999999999999999888 899
Q ss_pred hhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcccccc
Q 037732 152 IRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA 229 (350)
Q Consensus 152 l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 229 (350)
++.++-|+.||+++|++. .+|..+.-++.|+.|.++. +..+.+|+. ++++++|+.|.+..|... .+|.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpk 167 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPK 167 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcH
Confidence 999999999999999887 7999999999999999998 667888988 799999999999988763 5677
Q ss_pred chhhcCCCceeEEEecCCCCCCccc
Q 037732 230 SLHELKHLISLELQIQDVNTFPRGL 254 (350)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~l~~~~ 254 (350)
.++.+..|+.|++++|.+..+|+++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhh
Confidence 8999999999999999999998884
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-16 Score=137.42 Aligned_cols=267 Identities=17% Similarity=0.164 Sum_probs=173.5
Q ss_pred eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecC-CC
Q 037732 68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYN-CK 145 (350)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~-~~ 145 (350)
.-++.++.++|...- +....+.+ +.+.+..+|...|+.+++||.|+|+.|.|+. -|+.|..+..|..|-+.+ |+
T Consensus 52 dCr~~GL~eVP~~LP-~~tveirL---dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP-PETVEIRL---DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCcccCcccCC-CcceEEEe---ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 334556777774222 24455677 5566888998889999999999999999986 577899998888877777 78
Q ss_pred CCC-c-hhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcch--
Q 037732 146 LLD-I-TVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWE-- 220 (350)
Q Consensus 146 l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-- 220 (350)
+++ + ..+..+..|+.|.+.-|++..++. .+..++++..|.+.. +....++...+..+.+++++.+..|.+....
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcccccccc
Confidence 888 4 677888888888888888875554 578888888888887 6666777655778888888887766632111
Q ss_pred ---hhhccccccchhhcCCC----------------------cee--EEEe-cC-CCCCCccc--ccCCccEEEEEEcCc
Q 037732 221 ---VEVEGVKNASLHELKHL----------------------ISL--ELQI-QD-VNTFPRGL--FLEKLETFKILIGGV 269 (350)
Q Consensus 221 ---~~~~~~~~~~l~~l~~L----------------------~~L--~l~~-~~-~~~l~~~~--~~~~L~~L~l~~~~~ 269 (350)
.......+-.++..... +.+ .+.. +. ...-|..- .+++|+.+++..+.+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 00011111111111111 111 0111 10 11111111 356666666655543
Q ss_pred cc----ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 270 WG----WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 270 ~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
-. ++.....++.|.+..|.+..+....+..+..|+.|+|.+|+++.+ -|..| ....+|..|++-.|||.+
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~--~~~aF--~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV--APGAF--QTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE--ecccc--cccceeeeeehccCcccC
Confidence 22 567777788888888877777776666678888888888888774 45555 667788888888777654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=2.6e-15 Score=133.69 Aligned_cols=249 Identities=17% Similarity=0.150 Sum_probs=128.5
Q ss_pred CCCccEEEecccCCcccc----ccChHHHhcCCcceEEeecCCcCcC-------CCccccCcccccEEEecCCCCCC--c
Q 037732 83 CPQLELLFICADKESSSL----TIPNKFFERMIQVRVINFSYMNLLS-------LPSSLGLLSNLQNLSLYNCKLLD--I 149 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~-------lp~~l~~l~~L~~L~l~~~~l~~--~ 149 (350)
++.++.+.+ ..+.... .++.. ....+.++.++++++.+.. ++..+..+++|++|++++|.+.. +
T Consensus 22 l~~L~~l~l--~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 22 LLCLQVLRL--EGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HhhccEEee--cCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 345777777 3333211 12222 2345667777777765542 23445566677777777777653 3
Q ss_pred hhhhccCC---CcEEEecCCCCc-----cccccccCC-CCccEEeccCCCCCC----ccCcchhCCCCCCcEEEcCCCCC
Q 037732 150 TVIRDLKK---LAVLCLRGSDIK-----RLPVEVGEL-TLLRLLDLRDCMELE----VIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 150 ~~l~~l~~---L~~L~l~~~~~~-----~lp~~l~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
..+..+.+ |+.|++++|.+. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++++|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 44444444 777777777665 223344555 677777777755332 12222 45566777777777665
Q ss_pred CcchhhhccccccchhhcCCCceeEEEecCCCCC-----Cccc-ccCCccEEEEEEcCccc-----ccc----cCccceE
Q 037732 217 DKWEVEVEGVKNASLHELKHLISLELQIQDVNTF-----PRGL-FLEKLETFKILIGGVWG-----WEY----ADIWCRE 281 (350)
Q Consensus 217 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~-----~~~----~~~~L~~ 281 (350)
.... ...++..+..+++|+.|++++|.+... +..+ .+++|++|++..+.+.+ ... ..+.|++
T Consensus 178 ~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 178 GDAG---IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred chHH---HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 3211 112333445556777777777765421 2222 24556666665544322 011 1245666
Q ss_pred EEEeCCCcc-----cchHHHHHHhcccceeeeccccccch--hhhhhhhcccCc-CcceEEEEeCccc
Q 037732 282 FKIDLDSKI-----RLKDGLILKLEGIEDLWLSYLEEQDV--NYFVNELVKVGP-SQLKHLYIRGSHL 341 (350)
Q Consensus 282 L~l~~~~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~l~~~~~-~~L~~L~l~~~~~ 341 (350)
|+++++... .+...+.. +++|+.+++++|.+.+. +.+...+ ..+ +.|+.|++.++++
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDSF 319 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCCC
Confidence 666665432 11112221 24566666666666532 2233333 333 5666666665553
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=6.3e-16 Score=145.55 Aligned_cols=244 Identities=20% Similarity=0.203 Sum_probs=160.7
Q ss_pred CCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEE
Q 037732 83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVL 161 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L 161 (350)
.-+|.+|++ .++....+|..+ ..+.+|+.|+++.|.+..+|.+...+.+|++|.|.+|.+.. |.++..+.+|++|
T Consensus 44 ~v~L~~l~l---snn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 44 RVKLKSLDL---SNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeeeEEeec---cccccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 344777888 556667777764 36778888888888888888777888888888888887776 7788888888888
Q ss_pred EecCCCCccccccccCCCCccEEeccCCCCCCccCcc---------------hhCCCCCCcE-EEcCCCCCCcchhhhcc
Q 037732 162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPN---------------ILSNLSHLEE-LYMGPRSFDKWEVEVEG 225 (350)
Q Consensus 162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---------------~l~~l~~L~~-L~l~~~~~~~~~~~~~~ 225 (350)
++++|++..+|.-+..+..+..+..++|..+.+++.. +......+++ |++..|.....+
T Consensus 120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~d----- 194 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLD----- 194 (1081)
T ss_pred ccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhh-----
Confidence 8888888877777777776666666664222222211 0111122333 666655553111
Q ss_pred ccccchhhcC--------------------CCceeEEEecCCCCCCcccccCCccEEEEEEc---CcccccccCccceEE
Q 037732 226 VKNASLHELK--------------------HLISLELQIQDVNTFPRGLFLEKLETFKILIG---GVWGWEYADIWCREF 282 (350)
Q Consensus 226 ~~~~~l~~l~--------------------~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~---~~~~~~~~~~~L~~L 282 (350)
+.++. +++.|+.+.|.+...-......+|+++++... .++.|+..+.+|+.+
T Consensus 195 -----ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 195 -----LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred -----hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 22222 23333333333322111112456777777543 355677788888888
Q ss_pred EEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 283 KIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
+...|....+|..++.. .+|+.|.+..|.+.. +|... +++..|++|+|..|.+..+|+
T Consensus 270 ~~n~N~l~~lp~ri~~~-~~L~~l~~~~nel~y---ip~~l--e~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRI-TSLVSLSAAYNELEY---IPPFL--EGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred cccchhHHhhHHHHhhh-hhHHHHHhhhhhhhh---CCCcc--cccceeeeeeehhccccccch
Confidence 88887777777777764 788888888777776 66666 779999999999999999997
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2.7e-14 Score=127.18 Aligned_cols=236 Identities=17% Similarity=0.135 Sum_probs=168.8
Q ss_pred hHHHhcCCcceEEeecCCcCc-----CCCccccCcccccEEEecCCCCCC--------chhhhccCCCcEEEecCCCCc-
Q 037732 104 NKFFERMIQVRVINFSYMNLL-----SLPSSLGLLSNLQNLSLYNCKLLD--------ITVIRDLKKLAVLCLRGSDIK- 169 (350)
Q Consensus 104 ~~~~~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~l~~--------~~~l~~l~~L~~L~l~~~~~~- 169 (350)
..++..+.+|+.++++++.++ .++..+...+.+++++++++.+.. +..+..+++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344567888999999999884 256667778889999999987762 256677889999999999776
Q ss_pred cccccccCC---CCccEEeccCCCCCC----ccCcchhCCC-CCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732 170 RLPVEVGEL---TLLRLLDLRDCMELE----VIPPNILSNL-SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE 241 (350)
Q Consensus 170 ~lp~~l~~l---~~L~~L~l~~~~~~~----~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 241 (350)
..+..+..+ ++|++|++++|.... .+... +..+ ++|++|++++|.+.... ...++..+..+++|++|+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELN 171 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEE
Confidence 344444444 449999999865432 12222 4566 89999999999885321 123455677788999999
Q ss_pred EEecCCCC-----CCccc-ccCCccEEEEEEcCcc--------cccccCccceEEEEeCCCccc-chHHHHHHh----cc
Q 037732 242 LQIQDVNT-----FPRGL-FLEKLETFKILIGGVW--------GWEYADIWCREFKIDLDSKIR-LKDGLILKL----EG 302 (350)
Q Consensus 242 l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~--------~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~----~~ 302 (350)
+++|.+.. ++..+ ..++|++|++..+.+. ..+..+++|++|+++++.... ....+...+ +.
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 99998763 22332 3468999999766542 245678899999999976543 222333333 79
Q ss_pred cceeeecccccc--chhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732 303 IEDLWLSYLEEQ--DVNYFVNELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 303 L~~L~L~~n~l~--~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
|+.|++++|.++ +...+...+ ..+++|+.+++++|.++..+
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCCCcHHH
Confidence 999999999997 333344555 56799999999999988654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=2.2e-15 Score=129.55 Aligned_cols=253 Identities=19% Similarity=0.225 Sum_probs=181.6
Q ss_pred cccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhc
Q 037732 78 LEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRD 154 (350)
Q Consensus 78 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~ 154 (350)
|.-..|++..-..+. .+.....++|..+ -.....++|..|.|+.+|+ .|+.+++||.|||++|.++. +..+..
T Consensus 38 P~pC~Cs~~~g~~Vd-Cr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVD-CRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred CCCcccCCCCCceEE-ccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 333455554433331 1344566777642 2466789999999998776 78999999999999999988 789999
Q ss_pred cCCCcEEEecC-CCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732 155 LKKLAVLCLRG-SDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH 232 (350)
Q Consensus 155 l~~L~~L~l~~-~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 232 (350)
+.+|..|-+.+ |+|+.+|.. ++++..++.|.+.- +.+..++...+..++++..|.+..|.+.... -.++.
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~-------~~tf~ 185 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSIC-------KGTFQ 185 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhc-------ccccc
Confidence 99988877766 799999984 78999999888866 5566677777899999999999888763222 13677
Q ss_pred hcCCCceeEEEecCCC-------------CCC-----------------------cccccCCccEE--EEEEcCcc----
Q 037732 233 ELKHLISLELQIQDVN-------------TFP-----------------------RGLFLEKLETF--KILIGGVW---- 270 (350)
Q Consensus 233 ~l~~L~~L~l~~~~~~-------------~l~-----------------------~~~~~~~L~~L--~l~~~~~~---- 270 (350)
.+..++.+++..|.+- ..| +.-+.-+++.+ .+.....+
T Consensus 186 ~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c 265 (498)
T KOG4237|consen 186 GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC 265 (498)
T ss_pred chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC
Confidence 7888888888777631 001 10001111111 11111111
Q ss_pred --cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 271 --GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 271 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
..+..+++|+.|++++|.+..+.++.+....+++.|.|..|.+..+. ...| .++..|+.|+|.+|+++++-+
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~--~~~f--~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS--SGMF--QGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH--HHhh--hccccceeeeecCCeeEEEec
Confidence 13778899999999999999888876766799999999999998742 2345 688999999999999998754
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=2.1e-14 Score=128.89 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=151.6
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 187 (350)
.+..-...+++.|.+..+|..++.+..|+.+.++.|.+.. +..+.++..|.+++++.|+++.+|..+..|+ |+.|.++
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 3455566888999988899988888899999999998888 8889999999999999999999998888877 8888888
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG 267 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~ 267 (350)
+ ++++.+|.. ++....|.+|+.+.|.+. .+|.-++++.+|+.|.+..|.+..+|+++.
T Consensus 152 N-Nkl~~lp~~-ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~l~vrRn~l~~lp~El~------------ 209 (722)
T KOG0532|consen 152 N-NKLTSLPEE-IGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRDLNVRRNHLEDLPEELC------------ 209 (722)
T ss_pred c-CccccCCcc-cccchhHHHhhhhhhhhh--------hchHHhhhHHHHHHHHHhhhhhhhCCHHHh------------
Confidence 7 777888888 688888999998888763 455668888888888888888888888741
Q ss_pred CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcc-cCcCcceEEEEeCc
Q 037732 268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK-VGPSQLKHLYIRGS 339 (350)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~-~~~~~L~~L~l~~~ 339 (350)
.-.|..|+++.|.+..+|..+.+ +..|++|.|.+|-++. =|..++. +...-.++|+.+-|
T Consensus 210 --------~LpLi~lDfScNkis~iPv~fr~-m~~Lq~l~LenNPLqS---PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 --------SLPLIRLDFSCNKISYLPVDFRK-MRHLQVLQLENNPLQS---PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred --------CCceeeeecccCceeecchhhhh-hhhheeeeeccCCCCC---ChHHHHhccceeeeeeecchhc
Confidence 12467777777777777776665 4788888888887776 3444432 33455566666666
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1e-12 Score=129.09 Aligned_cols=248 Identities=23% Similarity=0.253 Sum_probs=153.2
Q ss_pred ceeeecccccccccccCCCCCccEEEecccCCcc-ccccChHHHhcCCcceEEeecCC-cCcCCCccccCcccccEEEec
Q 037732 65 NVFSATEEQTNLLLEVVECPQLELLFICADKESS-SLTIPNKFFERMIQVRVINFSYM-NLLSLPSSLGLLSNLQNLSLY 142 (350)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~ 142 (350)
...+.-.+.+..++....++++++|.+ ..+.. ...++..+|..++.|++||+++| .+..+|..++.+.+||||+++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll--~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLL--QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEE--eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 344455566666776677889999998 44442 78888888999999999999987 456899999999999999999
Q ss_pred CCCCCC-chhhhccCCCcEEEecCC-CCccccccccCCCCccEEeccCCC-CCCcc-CcchhCCCCCCcEEEcCCCCC--
Q 037732 143 NCKLLD-ITVIRDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCM-ELEVI-PPNILSNLSHLEELYMGPRSF-- 216 (350)
Q Consensus 143 ~~~l~~-~~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~-- 216 (350)
++.+.. |..++++.+|.+|++..+ ....+|.....+++|++|.+.... ..+.. -.+ +.++.+|+.+.......
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSVLL 682 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecchhHh
Confidence 999999 999999999999999988 444556566679999999987632 11111 111 34444555444432221
Q ss_pred -Ccchh---------------hhccccccchhhcCCCceeEEEecCCCCCCccc-------c-cCCccEEEEEEcC---c
Q 037732 217 -DKWEV---------------EVEGVKNASLHELKHLISLELQIQDVNTFPRGL-------F-LEKLETFKILIGG---V 269 (350)
Q Consensus 217 -~~~~~---------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-------~-~~~L~~L~l~~~~---~ 269 (350)
..... ......+.++..+.+|+.|.+..+...+..... . .+++..+.+..+. .
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 00000 001133345566677777777777654321110 0 1122222222222 2
Q ss_pred ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccc
Q 037732 270 WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQD 315 (350)
Q Consensus 270 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 315 (350)
+.|.--.++|+.|.+..+...+.|....+.+..++.+-+..+.+..
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 3344456778888887755554443333333445444444444443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.6e-13 Score=116.83 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=37.2
Q ss_pred HhcCCcceEEeecCCcCcC---CCccccCcccccEEEecCCCCCCc---hhhhccCCCcEEEecCCCCc--cccccccCC
Q 037732 107 FERMIQVRVINFSYMNLLS---LPSSLGLLSNLQNLSLYNCKLLDI---TVIRDLKKLAVLCLRGSDIK--RLPVEVGEL 178 (350)
Q Consensus 107 ~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~~---~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l 178 (350)
.+.|++++.|+|+.|-+.. +..-...+++|+.|+++.|++..+ ..-..+.+|+.|.++.|.++ .+...+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3445555555555554332 222234455555555555554331 11113444555555555444 222223344
Q ss_pred CCccEEeccCC
Q 037732 179 TLLRLLDLRDC 189 (350)
Q Consensus 179 ~~L~~L~l~~~ 189 (350)
++|..|.+..|
T Consensus 222 Psl~~L~L~~N 232 (505)
T KOG3207|consen 222 PSLEVLYLEAN 232 (505)
T ss_pred CcHHHhhhhcc
Confidence 55555555543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=3.1e-11 Score=95.98 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=43.4
Q ss_pred cCCcceEEeecCCcCcCCCcccc-CcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc-cCCCCccEEec
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLG-LLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDL 186 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l 186 (350)
+...++.|+|.++.++.+.. ++ .+.+|+.|++++|.++.++.+..+++|++|++++|.++.++..+ ..+++|++|.+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 34456677777776665532 44 45667777777777777666666777777777777777665444 34677777777
Q ss_pred cCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEec
Q 037732 187 RDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ 245 (350)
Q Consensus 187 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 245 (350)
++|. +..+.. ..+..+++|+.|++.+|++.... ..-...+..+|+|+.||-..-
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~----~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKK----NYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGST----THHHHHHHH-TT-SEETTEET
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccchh----hHHHHHHHHcChhheeCCEEc
Confidence 6632 222211 11566777777777777763221 122344666777777765443
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=4.3e-11 Score=100.05 Aligned_cols=221 Identities=18% Similarity=0.149 Sum_probs=150.4
Q ss_pred cCCcceEEeecCCc-------Cc--CCCccccCcccccEEEecCCCCCCchhh-hccCCCcEEEecCCCCccccccccCC
Q 037732 109 RMIQVRVINFSYMN-------LL--SLPSSLGLLSNLQNLSLYNCKLLDITVI-RDLKKLAVLCLRGSDIKRLPVEVGEL 178 (350)
Q Consensus 109 ~l~~L~~L~l~~~~-------~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l-~~l~~L~~L~l~~~~~~~lp~~l~~l 178 (350)
-+..|..|.+++.. +. .+|-.+.-+.+|+.+.++.|.-..+..+ ..-+-|+++.+.++.++..|.- --.
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l-~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL-LPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccc-cch
Confidence 46678888887642 11 2555566677888888888764332111 2235688888877655533321 111
Q ss_pred CCccEEeccCCC-CC--CccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccc
Q 037732 179 TLLRLLDLRDCM-EL--EVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLF 255 (350)
Q Consensus 179 ~~L~~L~l~~~~-~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~ 255 (350)
. ...+.+... .. +..... +..++.|+++++++|.++. +.++..-.+.++.|+++.|.+..+....+
T Consensus 259 ~--~~~D~~~~E~~t~~G~~~~~-~dTWq~LtelDLS~N~I~~--------iDESvKL~Pkir~L~lS~N~i~~v~nLa~ 327 (490)
T KOG1259|consen 259 T--ILADPSGSEPSTSNGSALVS-ADTWQELTELDLSGNLITQ--------IDESVKLAPKLRRLILSQNRIRTVQNLAE 327 (490)
T ss_pred h--hhcCccCCCCCccCCceEEe-cchHhhhhhccccccchhh--------hhhhhhhccceeEEeccccceeeehhhhh
Confidence 1 112222210 01 111111 4456778999999998754 34567778899999999999888766448
Q ss_pred cCCccEEEEEEcCccc---ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcce
Q 037732 256 LEKLETFKILIGGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLK 332 (350)
Q Consensus 256 ~~~L~~L~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~ 332 (350)
+++|+.|+++.+.... |...+.+.+.|.++.|....+. ++.+ +-+|+.|++++|++..+..+ ..+ +.+|.|+
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~K-LYSLvnLDl~~N~Ie~ldeV-~~I--G~LPCLE 402 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRK-LYSLVNLDLSSNQIEELDEV-NHI--GNLPCLE 402 (490)
T ss_pred cccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHh-hhhheeccccccchhhHHHh-ccc--ccccHHH
Confidence 8999999998766433 6778889999999998877654 4555 47999999999999886444 456 8899999
Q ss_pred EEEEeCccceeccC
Q 037732 333 HLYIRGSHLTLNPA 346 (350)
Q Consensus 333 ~L~l~~~~~~~~p~ 346 (350)
.+.+.+||+..+|+
T Consensus 403 ~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 403 TLRLTGNPLAGSVD 416 (490)
T ss_pred HHhhcCCCccccch
Confidence 99999999998885
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.6e-12 Score=114.77 Aligned_cols=134 Identities=28% Similarity=0.364 Sum_probs=65.0
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 187 (350)
++..|++++++.|++..+|..++.|+ |+.|-+++|++.. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+.
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 44445555555555444444443332 4445555554444 444444444555555555555555545555555555544
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL 254 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 254 (350)
. +.+..+|++ +..+ .|..||++.|++. .+|..|.+|+.|++|-+.+|.+.+-|..+
T Consensus 198 R-n~l~~lp~E-l~~L-pLi~lDfScNkis--------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 198 R-NHLEDLPEE-LCSL-PLIRLDFSCNKIS--------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred h-hhhhhCCHH-HhCC-ceeeeecccCcee--------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 4 334444444 2322 2455555544432 33444555555555555555555555554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.2e-11 Score=103.35 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=112.0
Q ss_pred CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732 110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 189 (350)
Q Consensus 110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 189 (350)
++.|+.+|+++|.++.+.+++.-++.++.|++++|.+..+..+..+++|..||+++|.+..+...-.++-+.++|.++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 5678899999999998888888889999999999999988889999999999999998887765556788899999988
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCc
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPR 252 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 252 (350)
+.++.+.. ++++-+|..|++.+|++...+. ...+++++.|+.+.+.+|++..++.
T Consensus 362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie~lde------V~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIETLSG--LRKLYSLVNLDLSSNQIEELDE------VNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhhhh--hHhhhhheeccccccchhhHHH------hcccccccHHHHHhhcCCCccccch
Confidence 66666555 7888899999999999865443 2458899999999999998876553
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2e-11 Score=106.79 Aligned_cols=211 Identities=20% Similarity=0.175 Sum_probs=140.0
Q ss_pred hcCCcceEEeecCCcCcCCC--ccccCcccccEEEecCCCCCC----chhhhccCCCcEEEecCCCCcccccc--ccCCC
Q 037732 108 ERMIQVRVINFSYMNLLSLP--SSLGLLSNLQNLSLYNCKLLD----ITVIRDLKKLAVLCLRGSDIKRLPVE--VGELT 179 (350)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L~l~~~~~~~lp~~--l~~l~ 179 (350)
+++++|+.+.|.++.+...+ .....|++++.||+++|-+.. ..-..++++|+.|+++.|++.....+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 36788999999988877655 367789999999999997765 25567899999999999977643332 23567
Q ss_pred CccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc---ccc
Q 037732 180 LLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG---LFL 256 (350)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~---~~~ 256 (350)
+|+.|.++.|+..+.-...++..+++|..|++..|.. .........-++.|+.|++++|.+-+++.. ..+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-------~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-------ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-------cceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 8999999998876654445567889999999998853 122223344567799999999987655422 256
Q ss_pred CCccEEEEEEcCccccc-ccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEE
Q 037732 257 EKLETFKILIGGVWGWE-YADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLY 335 (350)
Q Consensus 257 ~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~ 335 (350)
+.|+.|++..+++.+.- ..+.++. ....+++|+.|++..|.+++|+.+- .+ ..+++|++|.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~---------------kt~~f~kL~~L~i~~N~I~~w~sl~-~l--~~l~nlk~l~ 332 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLD---------------KTHTFPKLEYLNISENNIRDWRSLN-HL--RTLENLKHLR 332 (505)
T ss_pred cchhhhhccccCcchhcCCCccchh---------------hhcccccceeeecccCccccccccc-hh--hccchhhhhh
Confidence 67777777665544321 0110000 1223567777777777776664442 23 3456666666
Q ss_pred EeCcccee
Q 037732 336 IRGSHLTL 343 (350)
Q Consensus 336 l~~~~~~~ 343 (350)
+..|+++.
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 66666543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=1.9e-10 Score=105.60 Aligned_cols=193 Identities=23% Similarity=0.283 Sum_probs=121.2
Q ss_pred EEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCC-CccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCC
Q 037732 138 NLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELT-LLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS 215 (350)
Q Consensus 138 ~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (350)
.++...+.+.. +..+..+..+..|++.++.+..++....... +|+.|+++. +.+..+|.. ++.+++|+.|+++.|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hhccccccccccCCch
Confidence 45555555533 5555555666666666666666666666553 666666666 445555433 5666777777776666
Q ss_pred CCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcC---cccccccCccceEEEEeCCCccc
Q 037732 216 FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGG---VWGWEYADIWCREFKIDLDSKIR 291 (350)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~ 291 (350)
+. .++...+..+.|+.|++++|.+..+|..+ ....|+++.+..+. ....+....++..+.+.++....
T Consensus 175 l~--------~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 175 LS--------DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred hh--------hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee
Confidence 53 22333335666777777777777776654 34556666665552 23345566666666666666555
Q ss_pred chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 292 LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 292 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
.+..+.. +++++.|++++|.++.+ +. + ..+.+|+.|+++++.++..|+.
T Consensus 247 ~~~~~~~-l~~l~~L~~s~n~i~~i---~~-~--~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 247 LPESIGN-LSNLETLDLSNNQISSI---SS-L--GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccchhcc-ccccceecccccccccc---cc-c--cccCccCEEeccCccccccchh
Confidence 4544554 47789999998888884 33 4 6778899999988887766553
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=6e-10 Score=88.65 Aligned_cols=135 Identities=22% Similarity=0.232 Sum_probs=50.8
Q ss_pred ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCc-hh
Q 037732 73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDI-TV 151 (350)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~-~~ 151 (350)
.++..+...+..+++.|++ .+..+..+.. ....+.+|+.|++++|.+..++. +..++.|+.|++++|.++.. +.
T Consensus 8 ~i~~~~~~~n~~~~~~L~L---~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNL---RGNQISTIEN-LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccc---cccccccccc-hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccc
Confidence 4445555566678888999 4444444432 22257889999999999988754 77889999999999999884 44
Q ss_pred h-hccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCc--cCcchhCCCCCCcEEEcC
Q 037732 152 I-RDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEV--IPPNILSNLSHLEELYMG 212 (350)
Q Consensus 152 l-~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~ 212 (350)
+ ..+++|+.|++++|++..+.. .+..+++|+.|++.+|..... ....++..+++|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5 468999999999998875543 567889999999988543321 123457788999999754
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=2.2e-10 Score=97.63 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=80.0
Q ss_pred CCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC-----CCccc-ccCCccEEEEEEcCc------
Q 037732 202 NLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT-----FPRGL-FLEKLETFKILIGGV------ 269 (350)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~------ 269 (350)
.-+.|+.+....|.+.... .......++..+.|+.+.++.|.+.. +...+ .+++|+.|++..+..
T Consensus 155 ~~~~Lrv~i~~rNrlen~g---a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGG---ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CCcceEEEEeecccccccc---HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 3445666666655553222 11233445556666666666666532 11122 356666666654331
Q ss_pred --ccccccCccceEEEEeCC-----CcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732 270 --WGWEYADIWCREFKIDLD-----SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 270 --~~~~~~~~~L~~L~l~~~-----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
...++..++|+.|+++.+ +...+-.++.+..|+|+.|.+.+|.++.-........-...|.|+.|+|++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 123455667888887763 3344555666667899999999998865322222221145799999999999883
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=2e-09 Score=98.85 Aligned_cols=170 Identities=28% Similarity=0.375 Sum_probs=120.0
Q ss_pred cCCcceEEeecCCcCcCCCccccCcc-cccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEec
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLS-NLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDL 186 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l 186 (350)
.+..++.|++.++.+..++.....+. +|+.|++++|.+.. +..+..+++|+.|+++.|++..+|...+..++|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 55778888888888888887777664 88888888888888 46888888888888888888888877767888888888
Q ss_pred cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEE
Q 037732 187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKIL 265 (350)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~ 265 (350)
++ +.+..+|.. +..+..|+++.+++|... ..+..+..++.+..+.+..|.+..++..+ .++.++.|++.
T Consensus 194 s~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 194 SG-NKISDLPPE-IELLSALEELDLSNNSII--------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred cC-CccccCchh-hhhhhhhhhhhhcCCcce--------ecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 88 666777775 356666888888877431 33445777777777777777766655554 45556666665
Q ss_pred EcCccc--ccccCccceEEEEeCCC
Q 037732 266 IGGVWG--WEYADIWCREFKIDLDS 288 (350)
Q Consensus 266 ~~~~~~--~~~~~~~L~~L~l~~~~ 288 (350)
.+.+.. .++...+++.|+++++.
T Consensus 264 ~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 264 NNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccccccccCccCEEeccCcc
Confidence 444322 14455566666665543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=4.6e-09 Score=89.73 Aligned_cols=217 Identities=17% Similarity=0.081 Sum_probs=127.8
Q ss_pred cCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCC---CC--chhhhccCCCcEEEecCCCCccccccccCC
Q 037732 109 RMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKL---LD--ITVIRDLKKLAVLCLRGSDIKRLPVEVGEL 178 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l---~~--~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l 178 (350)
.+..++.+++++|.+.. +.+.+...+.|+.-++++-.- .. |+.+. .+.+.+..+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~----------------~l~~aL~~~ 91 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK----------------MLSKALLGC 91 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH----------------HHHHHHhcC
Confidence 45666777777776652 344455555555555554211 11 11110 111233445
Q ss_pred CCccEEeccCCCCCCccCc---chhCCCCCCcEEEcCCCCCCcchhhhccc------cccchhhcCCCceeEEEecCCCC
Q 037732 179 TLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMGPRSFDKWEVEVEGV------KNASLHELKHLISLELQIQDVNT 249 (350)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~l~~l~~L~~L~l~~~~~~~ 249 (350)
++|+.+++|.|..-...++ ..+..+.+|++|.+.+|.+....+...+. .....++-+.|+.+....|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 5666666666433222221 22555666777777666654332211000 22334556789999999998875
Q ss_pred CCccc------ccCCccEEEEEEcCccc--------ccccCccceEEEEeCCCccc-----chHHHHHHhcccceeeecc
Q 037732 250 FPRGL------FLEKLETFKILIGGVWG--------WEYADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSY 310 (350)
Q Consensus 250 l~~~~------~~~~L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~ 310 (350)
-+... ..+.|+.+.+..+.+.. .+..|++|+.|++..|.... +..++.. +++|+.|+++.
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccc
Confidence 54332 45889999997766533 36789999999999874433 3333443 47899999998
Q ss_pred ccccc--hhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 311 LEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 311 n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+.+.. ...+...+. +..|+|+.|.+.+|.++-
T Consensus 251 cll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALK-ESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccccccHHHHHHHHh-ccCCCCceeccCcchhHH
Confidence 87753 334445554 458999999999998763
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-09 Score=100.79 Aligned_cols=221 Identities=21% Similarity=0.200 Sum_probs=94.3
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD 188 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 188 (350)
.+.++..+++.+|.+..+...+..+++|++|++++|.++....+..+..|+.|++.+|.+..+. .+..++.|+.+++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence 3455555555555555444334445555555555555555544555555555555555555443 333355555555555
Q ss_pred CCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccC--CccEEEEE
Q 037732 189 CMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLE--KLETFKIL 265 (350)
Q Consensus 189 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~ 265 (350)
|. +..+.. . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+..+-...... +|+.+.+.
T Consensus 172 n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~i---------~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 172 NR-IVDIENDE-LSELISLEELDLGGNSIREI---------EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLS 240 (414)
T ss_pred ch-hhhhhhhh-hhhccchHHHhccCCchhcc---------cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcc
Confidence 22 222222 1 13444555555555444221 11222333333344444433322111111 14444444
Q ss_pred EcCccc---ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732 266 IGGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 266 ~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
.+.+.. .+.....+..|++..+....... ....+.+..+....|.+.........-.....+.++...+..++..
T Consensus 241 ~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 241 GNRISRSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cCccccccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 333322 23344445555554433322221 1112444444554444432111111100134566666666666654
Q ss_pred e
Q 037732 343 L 343 (350)
Q Consensus 343 ~ 343 (350)
.
T Consensus 319 ~ 319 (414)
T KOG0531|consen 319 K 319 (414)
T ss_pred c
Confidence 4
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=4.3e-09 Score=96.99 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=40.4
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEecc
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLR 187 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~ 187 (350)
.+.+|++|++++|.|+.+.. +..++.|+.|++++|.+...+.+..+.+|+.+++++|.+..+... ...+.+++.+.+.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred hhhcchheeccccccccccc-hhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 45555555555555554432 344445555555555555544444455555555555555544432 3444555555554
Q ss_pred C
Q 037732 188 D 188 (350)
Q Consensus 188 ~ 188 (350)
+
T Consensus 195 ~ 195 (414)
T KOG0531|consen 195 G 195 (414)
T ss_pred C
Confidence 4
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.64 E-value=9.2e-08 Score=92.34 Aligned_cols=105 Identities=28% Similarity=0.325 Sum_probs=88.4
Q ss_pred cccEEEecCCCCCC--chhhhccCCCcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEc
Q 037732 135 NLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYM 211 (350)
Q Consensus 135 ~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 211 (350)
.++.|+|++|.+.+ +..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999998877 788999999999999999887 78888999999999999997777778877 789999999999
Q ss_pred CCCCCCcchhhhccccccchhhc-CCCceeEEEecCC
Q 037732 212 GPRSFDKWEVEVEGVKNASLHEL-KHLISLELQIQDV 247 (350)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 247 (350)
++|.+ .+.+|..++.+ .++..+++.+|..
T Consensus 498 s~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSL-------SGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcc-------cccCChHHhhccccCceEEecCCcc
Confidence 99988 67788777764 4667888887753
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=7.9e-08 Score=62.83 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=27.6
Q ss_pred cceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCC
Q 037732 112 QVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSD 167 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~ 167 (350)
+|++|++++|.+..+|. .|..+++|++|++++|.+.. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554432 34455555555555555444 2344555555555555443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.56 E-value=2.1e-07 Score=89.92 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=82.9
Q ss_pred CCcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC
Q 037732 157 KLAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK 235 (350)
Q Consensus 157 ~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 235 (350)
.+..|++++|.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+ .+.+|+.+++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCC
Confidence 3778899988887 78888999999999999997766788877 78999999999999988 678888899999
Q ss_pred CCceeEEEecCCC-CCCccc-c-cCCccEEEEEE
Q 037732 236 HLISLELQIQDVN-TFPRGL-F-LEKLETFKILI 266 (350)
Q Consensus 236 ~L~~L~l~~~~~~-~l~~~~-~-~~~L~~L~l~~ 266 (350)
+|+.|++++|.+. .+|..+ . ..++..+.+..
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 9999999999875 677665 2 24455666643
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=3.8e-08 Score=64.33 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=52.6
Q ss_pred ccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccc
Q 037732 277 IWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHL 341 (350)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 341 (350)
|+|+.|++++|....+|...+..+++|+.|++++|.++.+ -+..+ ..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f--~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAF--SNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE--ETTTT--TTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHH--cCCCCCCEEeCcCCcC
Confidence 5789999999999999877666789999999999999884 34566 7899999999999975
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=6.3e-09 Score=96.88 Aligned_cols=201 Identities=20% Similarity=0.242 Sum_probs=108.3
Q ss_pred CCcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhccC-CCcEEEecCCCCccccc-------ccc---
Q 037732 110 MIQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLK-KLAVLCLRGSDIKRLPV-------EVG--- 176 (350)
Q Consensus 110 l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~-~L~~L~l~~~~~~~lp~-------~l~--- 176 (350)
+.++++|.+-...-. .-|-.+..+..||.|.+++|.+.....+..+. .|++|. ..+.+..+-. .+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch
Confidence 455555655444322 12556677788888888888776533222221 233332 1222221111 111
Q ss_pred CCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccccc
Q 037732 177 ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFL 256 (350)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~ 256 (350)
.+..|.+.+.++ +.+..+... +.-++.|+.|+++.|++... +.+..++.|+.|+++.|.+..+|..-
T Consensus 162 ~Wn~L~~a~fsy-N~L~~mD~S-Lqll~ale~LnLshNk~~~v---------~~Lr~l~~LkhLDlsyN~L~~vp~l~-- 228 (1096)
T KOG1859|consen 162 VWNKLATASFSY-NRLVLMDES-LQLLPALESLNLSHNKFTKV---------DNLRRLPKLKHLDLSYNCLRHVPQLS-- 228 (1096)
T ss_pred hhhhHhhhhcch-hhHHhHHHH-HHHHHHhhhhccchhhhhhh---------HHHHhcccccccccccchhccccccc--
Confidence 122344444444 334444443 45556667777776666322 24666677777777777766655431
Q ss_pred CCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEE
Q 037732 257 EKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYI 336 (350)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l 336 (350)
...|. |..|.+++|...++- ++. .+.+|+.||++.|.+.+...+.. + ..+..|+.|+|
T Consensus 229 ----------------~~gc~-L~~L~lrnN~l~tL~-gie-~LksL~~LDlsyNll~~hseL~p-L--wsLs~L~~L~L 286 (1096)
T KOG1859|consen 229 ----------------MVGCK-LQLLNLRNNALTTLR-GIE-NLKSLYGLDLSYNLLSEHSELEP-L--WSLSSLIVLWL 286 (1096)
T ss_pred ----------------hhhhh-heeeeecccHHHhhh-hHH-hhhhhhccchhHhhhhcchhhhH-H--HHHHHHHHHhh
Confidence 11333 777777776665543 233 35788888888887765433321 2 23577888888
Q ss_pred eCccceeccC
Q 037732 337 RGSHLTLNPA 346 (350)
Q Consensus 337 ~~~~~~~~p~ 346 (350)
.|||+-+-|.
T Consensus 287 eGNPl~c~p~ 296 (1096)
T KOG1859|consen 287 EGNPLCCAPW 296 (1096)
T ss_pred cCCccccCHH
Confidence 8888776553
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.9e-09 Score=86.30 Aligned_cols=171 Identities=18% Similarity=0.047 Sum_probs=84.4
Q ss_pred CcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC
Q 037732 158 LAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK 235 (350)
Q Consensus 158 L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 235 (350)
|+++|++...++ .+...+..|.+|+.|.+.+...-+.+... +++-.+|+.|+++++...+ ....--.+.+++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-----~n~~~ll~~scs 260 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-----ENALQLLLSSCS 260 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-----hhHHHHHHHhhh
Confidence 555555555444 33333445555555555553333333333 4445555555555543211 011112244555
Q ss_pred CCceeEEEecCCCC--CCccc--ccCCccEEEEEEcC-------cccccccCccceEEEEeCCCccc--chHHHHHHhcc
Q 037732 236 HLISLELQIQDVNT--FPRGL--FLEKLETFKILIGG-------VWGWEYADIWCREFKIDLDSKIR--LKDGLILKLEG 302 (350)
Q Consensus 236 ~L~~L~l~~~~~~~--l~~~~--~~~~L~~L~l~~~~-------~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 302 (350)
.|..|++++|.+.. +...+ .-++|..|++..+. +......||+|.+|+++.+.... .-..+.+ |+.
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~ 339 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNY 339 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cch
Confidence 56666666655321 11111 12445555553221 12234577888888887743222 1122333 688
Q ss_pred cceeeeccccccchhhhhhhh-cccCcCcceEEEEeCc
Q 037732 303 IEDLWLSYLEEQDVNYFVNEL-VKVGPSQLKHLYIRGS 339 (350)
Q Consensus 303 L~~L~L~~n~l~~~~~~~~~l-~~~~~~~L~~L~l~~~ 339 (350)
|+.|.++ +|.++ +|..+ .....|.|.+|++.+|
T Consensus 340 L~~lSls--RCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLS--RCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehh--hhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 8888888 55553 33222 2256788888888776
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.2e-08 Score=83.00 Aligned_cols=172 Identities=15% Similarity=0.079 Sum_probs=95.5
Q ss_pred cceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCcccc--ccccCCCCccEE
Q 037732 112 QVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIKRLP--VEVGELTLLRLL 184 (350)
Q Consensus 112 ~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~~lp--~~l~~l~~L~~L 184 (350)
.++.+||+...++. +-.-++.+.+|+.|.+.++++.+ ...+.+-.+|+.++++.| .+++.. -.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36677777776662 33445667777777777777777 366677777777777776 555322 235677777777
Q ss_pred eccCCCCCCccCcchhCCC-CCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC-C-CCCccc-ccCCcc
Q 037732 185 DLRDCMELEVIPPNILSNL-SHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV-N-TFPRGL-FLEKLE 260 (350)
Q Consensus 185 ~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~-~l~~~~-~~~~L~ 260 (350)
+++.|........-.+.+. .+|..|+++|+..--. ...+..-...+++|..|+++.|-. . .....+ .++.|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~----~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ----KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh----hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 7777654433222112222 4567777776542100 011222234567777777776641 1 111111 345566
Q ss_pred EEEEEEcCcc--c---ccccCccceEEEEeCC
Q 037732 261 TFKILIGGVW--G---WEYADIWCREFKIDLD 287 (350)
Q Consensus 261 ~L~l~~~~~~--~---~~~~~~~L~~L~l~~~ 287 (350)
+|.+..|-.. . -+...|+|++|++.+.
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 6665443211 1 2456677777777764
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=6.2e-08 Score=81.30 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=25.1
Q ss_pred hcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 300 LEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 300 ~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+|.+-.|+|+.|++..|..+ ..+ .+||.|+.|++.++|+..
T Consensus 223 ~p~~~~LnL~~~~idswasv-D~L--n~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASV-DAL--NGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCcchhhhhcccccccHHHH-HHH--cCCchhheeeccCCcccc
Confidence 35555666666666666443 344 566777777777766654
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=7.4e-07 Score=53.54 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=34.3
Q ss_pred cccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 301 EGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
++|++|++++|++++ ++..+ ..+++|+.|++++|+++.+|+
T Consensus 1 ~~L~~L~l~~N~i~~---l~~~l--~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD---LPPEL--SNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS---HGGHG--TTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc---cCchH--hCCCCCCEEEecCCCCCCCcC
Confidence 579999999999998 66667 789999999999999998875
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.6e-08 Score=94.22 Aligned_cols=127 Identities=28% Similarity=0.346 Sum_probs=99.9
Q ss_pred cceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCC
Q 037732 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCM 190 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~ 190 (350)
.|.+.+.++|.+..+-.++.-++.|+.|+|++|++.....+..+++|++||+++|.++.+|.- ...|. |+.|.+++ +
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-N 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-c
Confidence 455566666776667777888899999999999999988999999999999999999988863 33444 99999988 5
Q ss_pred CCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 248 (350)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 248 (350)
-+..+.. +.++.+|+.||++.|.+... .-..-+..+..|+.|.+.+|.+.
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCccc
Confidence 5565555 68999999999998877432 11233677788999999999864
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=2.5e-06 Score=51.23 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=18.1
Q ss_pred cccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccc
Q 037732 135 NLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRL 171 (350)
Q Consensus 135 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~l 171 (350)
+|++|++++|.+++ ++.++++++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555 33355555555555555555443
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=7.8e-06 Score=73.36 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=17.8
Q ss_pred ccceEEEEeCCCcccchHHHHHHhcccceeeeccccc
Q 037732 277 IWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEE 313 (350)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 313 (350)
++|+.|.++++....+|.. ...+|+.|+++.+.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~---LP~SLk~L~ls~n~~ 189 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEK---LPESLQSITLHIEQK 189 (426)
T ss_pred CcccEEEecCCCcccCccc---ccccCcEEEeccccc
Confidence 4566666665544444422 224666666665443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=7.5e-06 Score=68.21 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=72.7
Q ss_pred cCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCCCC-----c-------hhhhccCCCcEEEecCCCCc-c
Q 037732 109 RMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKLLD-----I-------TVIRDLKKLAVLCLRGSDIK-R 170 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~-----~-------~~l~~l~~L~~L~l~~~~~~-~ 170 (350)
-+..++.++||+|.+.. +...+..-.+|+.-++++-.... + +.+-++++|+..+++.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 37788889999988763 44455556677777776543211 1 34455677777777777554 3
Q ss_pred cccc----ccCCCCccEEeccCCCCCCccCcch-------------hCCCCCCcEEEcCCCCCCcchhhhccccccchhh
Q 037732 171 LPVE----VGELTLLRLLDLRDCMELEVIPPNI-------------LSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHE 233 (350)
Q Consensus 171 lp~~----l~~l~~L~~L~l~~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 233 (350)
.|+. +.+-+.|.||.+++|. ++.+...- ...-+.|+......|++...+. ......+..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~---~~~a~~l~s 183 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK---ELSAALLES 183 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH---HHHHHHHHh
Confidence 3332 4455667777776643 22221110 1233455565555555533221 111122333
Q ss_pred cCCCceeEEEecCCC
Q 037732 234 LKHLISLELQIQDVN 248 (350)
Q Consensus 234 l~~L~~L~l~~~~~~ 248 (350)
..+|+.+.+..|+++
T Consensus 184 h~~lk~vki~qNgIr 198 (388)
T COG5238 184 HENLKEVKIQQNGIR 198 (388)
T ss_pred hcCceeEEeeecCcC
Confidence 345666666666553
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=2.7e-06 Score=82.40 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=50.3
Q ss_pred CCccEEEecccCCcc-ccccChHHHhcCCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCCchhhhccCCCcE
Q 037732 84 PQLELLFICADKESS-SLTIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV 160 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~ 160 (350)
.+|+.|++ ++... ....+..+..-+|.|+.|.+.+-.+.. ...-...+++|+.||++++.++....++++++|+.
T Consensus 122 ~nL~~LdI--~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDI--SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCc--cccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 35555555 22221 222333334445666666666544431 11222345566666666666555555566666666
Q ss_pred EEecCCCCcccc--ccccCCCCccEEeccC
Q 037732 161 LCLRGSDIKRLP--VEVGELTLLRLLDLRD 188 (350)
Q Consensus 161 L~l~~~~~~~lp--~~l~~l~~L~~L~l~~ 188 (350)
|.+.+-.+..-. ..+.++++|++||+|.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 555443333211 1345555566665555
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=4e-06 Score=81.20 Aligned_cols=106 Identities=25% Similarity=0.213 Sum_probs=79.9
Q ss_pred CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC---chhhhccCCC
Q 037732 82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD---ITVIRDLKKL 158 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L 158 (350)
-+|.|++|.+ .+......--...+.++++|+.||+++++++.+ ..++++++|+.|.+++=.+.. ...+.++.+|
T Consensus 146 ~LPsL~sL~i--~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVI--SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEe--cCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 5789999999 443333333345577899999999999999887 668999999999999887765 6788999999
Q ss_pred cEEEecCCCCcccc---c----cccCCCCccEEeccCCC
Q 037732 159 AVLCLRGSDIKRLP---V----EVGELTLLRLLDLRDCM 190 (350)
Q Consensus 159 ~~L~l~~~~~~~lp---~----~l~~l~~L~~L~l~~~~ 190 (350)
++||++......-+ . --..+|+|+.||.+++.
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999986443222 1 12246788888877743
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.2e-05 Score=64.03 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=42.3
Q ss_pred cEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccC-CCCccEEeccCCCC--CCccCcchhCCCCCCcEEEcCC
Q 037732 137 QNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGE-LTLLRLLDLRDCME--LEVIPPNILSNLSHLEELYMGP 213 (350)
Q Consensus 137 ~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~-l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~~L~l~~ 213 (350)
..+|+++|.+...+.+..++.|.+|.+.+|.|..+...+.. +++|+.|.+.+|+. ++.+.+ +..|+.|+.|.+-+
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeeecC
Confidence 34444444444444444444444444444444444333322 23444444444221 112222 34444555555444
Q ss_pred CCCCcchhhhccccccchhhcCCCceeEEEec
Q 037732 214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQ 245 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 245 (350)
|+.... .+.-...+..+++|+.|+++.-
T Consensus 123 Npv~~k----~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHK----KNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred Cchhcc----cCceeEEEEecCcceEeehhhh
Confidence 443221 1112233444555555555443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=2.2e-06 Score=63.97 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=72.8
Q ss_pred CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEe
Q 037732 85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCL 163 (350)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l 163 (350)
+|...++ .++..+++|..+-..++.++.+++++|.+..+|..+..++.|+.|+++.|++.. |..+..+.++..|+.
T Consensus 54 el~~i~l---s~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISL---SDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEec---ccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 5556677 556678888887777889999999999999999999999999999999999888 888888889999998
Q ss_pred cCCCCcccccc
Q 037732 164 RGSDIKRLPVE 174 (350)
Q Consensus 164 ~~~~~~~lp~~ 174 (350)
.+|....+|..
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 88877777765
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=5e-05 Score=68.30 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=82.3
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCC-CCC-chhhhccCCCcEEEecCC-CCccccccccCCCCccEEe
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK-LLD-ITVIRDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLD 185 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~-~~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~ 185 (350)
.+.+++.|++++|.++.+|. + -.+|+.|.+++|. +.. |..+ ..+|++|++++| .+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 47899999999998888883 2 2369999999875 444 4444 358999999988 77777754 55555
Q ss_pred ccCC--CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhc-CCCceeEEEecCCCCCCcccccCCccEE
Q 037732 186 LRDC--MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHEL-KHLISLELQIQDVNTFPRGLFLEKLETF 262 (350)
Q Consensus 186 l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~l~~~~~~~~L~~L 262 (350)
+..+ ..+..+|. +|+.|.+.+++... ....+. .+ ++|+.|.+++|....+|..+ ..+|++|
T Consensus 119 L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~-----~~~lp~---~LPsSLk~L~Is~c~~i~LP~~L-P~SLk~L 182 (426)
T PRK15386 119 IKGSATDSIKNVPN-------GLTSLSINSYNPEN-----QARIDN---LISPSLKTLSLTGCSNIILPEKL-PESLQSI 182 (426)
T ss_pred eCCCCCcccccCcc-------hHhheecccccccc-----cccccc---ccCCcccEEEecCCCcccCcccc-cccCcEE
Confidence 5442 22344444 36677765332100 011111 12 57999999888766656543 3567777
Q ss_pred EEEE
Q 037732 263 KILI 266 (350)
Q Consensus 263 ~l~~ 266 (350)
.+..
T Consensus 183 ~ls~ 186 (426)
T PRK15386 183 TLHI 186 (426)
T ss_pred Eecc
Confidence 7643
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=2.9e-06 Score=71.56 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=45.0
Q ss_pred HhcCCcceEEeecCCcCcC---CCccccCcccccEEEecCCCCCC-chhh-hccCCCcEEEecCCCCc--cccccccCCC
Q 037732 107 FERMIQVRVINFSYMNLLS---LPSSLGLLSNLQNLSLYNCKLLD-ITVI-RDLKKLAVLCLRGSDIK--RLPVEVGELT 179 (350)
Q Consensus 107 ~~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~l~~~~l~~-~~~l-~~l~~L~~L~l~~~~~~--~lp~~l~~l~ 179 (350)
...+..++.++|.+|.++. +..-+.+++.|++|+++.|++.. +..+ ....+|++|.+.++.+. .....+..++
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3445666666666666652 33334556666666666666655 3444 24556666666555443 3333444555
Q ss_pred CccEEeccC
Q 037732 180 LLRLLDLRD 188 (350)
Q Consensus 180 ~L~~L~l~~ 188 (350)
.++.|+++.
T Consensus 147 ~vtelHmS~ 155 (418)
T KOG2982|consen 147 KVTELHMSD 155 (418)
T ss_pred hhhhhhhcc
Confidence 555555554
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=6.9e-05 Score=62.63 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=128.9
Q ss_pred cccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCc----ccc-------ccccCCCCccEEeccCCCC
Q 037732 129 SLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIK----RLP-------VEVGELTLLRLLDLRDCME 191 (350)
Q Consensus 129 ~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~----~lp-------~~l~~l~~L~~L~l~~~~~ 191 (350)
.+..+..+..+++|+|.+.. . ..+.+-.+|+..+++.-... .++ +.+.+|++|+..+++.|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34557788999999998866 3 34455567877777653111 232 3466899999999999766
Q ss_pred CCccCcc---hhCCCCCCcEEEcCCCCCCcchhhhccccc---------cchhhcCCCceeEEEecCCCCCCccc-----
Q 037732 192 LEVIPPN---ILSNLSHLEELYMGPRSFDKWEVEVEGVKN---------ASLHELKHLISLELQIQDVNTFPRGL----- 254 (350)
Q Consensus 192 ~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------~~l~~l~~L~~L~l~~~~~~~l~~~~----- 254 (350)
-...|+. .+++-+.|.+|.+.+|......+ +.+. .-..+.+.|+.+....|.+...+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG---~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG---GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccch---hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 5555543 35677889999999887754433 1222 12334577888888888876655433
Q ss_pred -ccCCccEEEEEEcCcccc---------cccCccceEEEEeCCCccc-----chHHHHHHhcccceeeecccccc--chh
Q 037732 255 -FLEKLETFKILIGGVWGW---------EYADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQ--DVN 317 (350)
Q Consensus 255 -~~~~L~~L~l~~~~~~~~---------~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~--~~~ 317 (350)
+..+|+.+.+..+++.+- +..+.+|+.|++..|.... +..++..+ +.|+.|.+..|-++ +.+
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhccccchhhccccHH
Confidence 235677777766665331 3456677777777653222 22233333 55677777755443 333
Q ss_pred hhhhhhcccCcCcceEEEEeCccc
Q 037732 318 YFVNELVKVGPSQLKHLYIRGSHL 341 (350)
Q Consensus 318 ~~~~~l~~~~~~~L~~L~l~~~~~ 341 (350)
.+...+.+..+|+|..|....|.+
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhh
Confidence 444445445567777777776654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=5.2e-06 Score=61.99 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=67.9
Q ss_pred CcceEEeecCCcCcCCCc---cccCcccccEEEecCCCCCC-chhhhcc-CCCcEEEecCCCCccccccccCCCCccEEe
Q 037732 111 IQVRVINFSYMNLLSLPS---SLGLLSNLQNLSLYNCKLLD-ITVIRDL-KKLAVLCLRGSDIKRLPVEVGELTLLRLLD 185 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~lp~---~l~~l~~L~~L~l~~~~l~~-~~~l~~l-~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~ 185 (350)
..+..++|++|.+-.+++ .+.+..+|...++++|.+.. |+.+... +-...+++.+|.++++|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 445567777776654333 34555667777777777776 5555443 367777777777777777777777777777
Q ss_pred ccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcc
Q 037732 186 LRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW 219 (350)
Q Consensus 186 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (350)
++. +.+...|.- +..+.++..|+..++.....
T Consensus 107 l~~-N~l~~~p~v-i~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRF-NPLNAEPRV-IAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccc-CccccchHH-HHHHHhHHHhcCCCCccccC
Confidence 776 444445544 34466666666665555433
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00029 Score=56.40 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=52.8
Q ss_pred HhcCCcceEEeecCCcCcCCCcccc-CcccccEEEecCCCCCC---chhhhccCCCcEEEecCCCCccccc----cccCC
Q 037732 107 FERMIQVRVINFSYMNLLSLPSSLG-LLSNLQNLSLYNCKLLD---ITVIRDLKKLAVLCLRGSDIKRLPV----EVGEL 178 (350)
Q Consensus 107 ~~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~l~~~~~~~lp~----~l~~l 178 (350)
|..++.|..|.+.+|.|+.+.+.+. .+++|..|.+.+|++.. +..+..+++|++|.+-+|.+..-.. .+.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3456667777777777776544443 34567777777776554 4556667777777777776653322 36677
Q ss_pred CCccEEeccC
Q 037732 179 TLLRLLDLRD 188 (350)
Q Consensus 179 ~~L~~L~l~~ 188 (350)
++|++||..+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 7888887755
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=9.9e-06 Score=67.74 Aligned_cols=79 Identities=25% Similarity=0.222 Sum_probs=34.7
Q ss_pred CcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCc----chhCCCCC
Q 037732 132 LLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPP----NILSNLSH 205 (350)
Q Consensus 132 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~ 205 (350)
+++.|++|.|+-|+++.+..+..+++|+.|.+..|.|..+.+ -+.++++|+.|.+..|...+..+. .++.-+++
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 344444444444444444444444444444444444443332 234445555554444333332221 23344455
Q ss_pred CcEEE
Q 037732 206 LEELY 210 (350)
Q Consensus 206 L~~L~ 210 (350)
|+.||
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 55543
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=1.3e-05 Score=66.98 Aligned_cols=106 Identities=26% Similarity=0.352 Sum_probs=80.0
Q ss_pred cccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEc
Q 037732 133 LSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYM 211 (350)
Q Consensus 133 l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l 211 (350)
+.+.+.|+..+|.+.++....+|+.|++|.++-|+|+.+. .+..|++|+.|.+.. +.+..+.. .-+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 5677888999999999888889999999999999999885 678999999999988 55554443 22678999999999
Q ss_pred CCCCCCcchhhhccccccchhhcCCCceeEE
Q 037732 212 GPRSFDKWEVEVEGVKNASLHELKHLISLEL 242 (350)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 242 (350)
..|+...-.+ ...-...+.-+++|++|+=
T Consensus 96 ~ENPCc~~ag--~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAG--QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccc--hhHHHHHHHHcccchhccC
Confidence 9888733221 1122234666777877753
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00017 Score=59.98 Aligned_cols=80 Identities=26% Similarity=0.429 Sum_probs=36.6
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCC--CCCC--chhhhccCCCcEEEecCCCCcccc--ccccCCCCcc
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC--KLLD--ITVIRDLKKLAVLCLRGSDIKRLP--VEVGELTLLR 182 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~--~l~~--~~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~ 182 (350)
.+..|+.+.+.++.++++- .+..+++|++|+++.| .+.. .....++++|+++++++|++..+. ..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444555555544443321 2344556666666666 2222 122233466666666665544211 1233444455
Q ss_pred EEeccCC
Q 037732 183 LLDLRDC 189 (350)
Q Consensus 183 ~L~l~~~ 189 (350)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 5555444
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.15 E-value=7.9e-06 Score=71.96 Aligned_cols=228 Identities=16% Similarity=0.075 Sum_probs=108.2
Q ss_pred hcCCcceEEeecCCc-CcC-CCccc-cCcccccEEEecCCC-CCC--ch-hhhccCCCcEEEecCC-CCc--cccccccC
Q 037732 108 ERMIQVRVINFSYMN-LLS-LPSSL-GLLSNLQNLSLYNCK-LLD--IT-VIRDLKKLAVLCLRGS-DIK--RLPVEVGE 177 (350)
Q Consensus 108 ~~l~~L~~L~l~~~~-~~~-lp~~l-~~l~~L~~L~l~~~~-l~~--~~-~l~~l~~L~~L~l~~~-~~~--~lp~~l~~ 177 (350)
..+++++.|.+.+|. ++. .-..+ ..+.+|+++++..|. +++ +. ....+++|+++++++| .++ .+..-..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 455666666665553 221 11112 234556666666543 333 22 2234556666666655 333 12222333
Q ss_pred CCCccEEeccCCCCCCc--cCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC-CCCC-cc
Q 037732 178 LTLLRLLDLRDCMELEV--IPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV-NTFP-RG 253 (350)
Q Consensus 178 l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~-~~ 253 (350)
+..++.+...+|...+. +-.. -+.+..+..+++..|...+.. .+-..-..+..|+.++.+++.. .+.+ ..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~lnl~~c~~lTD~-----~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKA-AAYCLEILKLNLQHCNQLTDE-----DLWLIACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred chhhhhhhhcccccccHHHHHHH-hccChHhhccchhhhccccch-----HHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence 44444444444322210 0000 112223333333333221111 1111123345667777766653 1111 11
Q ss_pred c--ccCCccEEEEEEcCccc------ccccCccceEEEEeCCCcccch--HHHHHHhcccceeeeccccc-cchhhhhhh
Q 037732 254 L--FLEKLETFKILIGGVWG------WEYADIWCREFKIDLDSKIRLK--DGLILKLEGIEDLWLSYLEE-QDVNYFVNE 322 (350)
Q Consensus 254 ~--~~~~L~~L~l~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~ 322 (350)
+ ...+|+.+.+..+.... .-.+++.|+.+++......... ..+...++.|+.|.|+++.. ++. ++ ..
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-gi-~~ 392 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-GI-RH 392 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-hh-hh
Confidence 1 35778888886655322 2336778888888774433322 22445688999999995432 221 11 11
Q ss_pred h--cccCcCcceEEEEeCcccee
Q 037732 323 L--VKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 323 l--~~~~~~~L~~L~l~~~~~~~ 343 (350)
+ +..+...|..+.+++||.+.
T Consensus 393 l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 393 LSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhccccccccceeeecCCCCch
Confidence 1 12567889999999998654
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.92 E-value=2.7e-05 Score=68.76 Aligned_cols=224 Identities=17% Similarity=0.113 Sum_probs=132.5
Q ss_pred cceEEeecCCcCc---CCCccccCcccccEEEecCCC-CCC--c-hhhhccCCCcEEEecCC-CCcc--ccccccCCCCc
Q 037732 112 QVRVINFSYMNLL---SLPSSLGLLSNLQNLSLYNCK-LLD--I-TVIRDLKKLAVLCLRGS-DIKR--LPVEVGELTLL 181 (350)
Q Consensus 112 ~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~-l~~--~-~~l~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L 181 (350)
-|+.|.++++.-. .+-..-..++++++|++.+|. +++ . ..-..+.+|+++++..| .++. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5778888887533 233334678888899888885 444 2 33345788999998886 5552 22234578888
Q ss_pred cEEeccCCCCCCc--cCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC-CCCCCccc---c
Q 037732 182 RLLDLRDCMELEV--IPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTFPRGL---F 255 (350)
Q Consensus 182 ~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~---~ 255 (350)
.+++++.|..+.. +.. ...++..++.+...||.-..... +...-..+..+.++++..|. +.+..-+. .
T Consensus 219 ~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~le~-----l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELELEA-----LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccHHH-----HHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 8898888765443 112 24556667777666543322111 11111223335555554553 22211111 3
Q ss_pred cCCccEEEEEEcCc------ccccccCccceEEEEeCCCccc--chHHHHHHhcccceeeeccccccchhhhhhhhcccC
Q 037732 256 LEKLETFKILIGGV------WGWEYADIWCREFKIDLDSKIR--LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVG 327 (350)
Q Consensus 256 ~~~L~~L~l~~~~~------~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~ 327 (350)
+.+|+.|....+.. ++.-..+++|+.+.++++.-.. --..+.+.++.|+.+++....+.....+. .+. ..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls-~~ 370 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLS-RN 370 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhc-cC
Confidence 56778887765542 2234578999999999843222 11236677899999999976543221122 222 57
Q ss_pred cCcceEEEEeCcccee
Q 037732 328 PSQLKHLYIRGSHLTL 343 (350)
Q Consensus 328 ~~~L~~L~l~~~~~~~ 343 (350)
+|.||.|.+++|...+
T Consensus 371 C~~lr~lslshce~it 386 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELIT 386 (483)
T ss_pred CchhccCChhhhhhhh
Confidence 8999999999987544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00061 Score=56.76 Aligned_cols=82 Identities=28% Similarity=0.318 Sum_probs=36.7
Q ss_pred cccccEEEecCCCCCCchhhhccCCCcEEEecCC--CCc-cccccccCCCCccEEeccCCCC--CCccCcchhCCCCCCc
Q 037732 133 LSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGS--DIK-RLPVEVGELTLLRLLDLRDCME--LEVIPPNILSNLSHLE 207 (350)
Q Consensus 133 l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~--~~~-~lp~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~ 207 (350)
+..|+.|.+.++.++....+-.+++|++|.++.| ++. .++....++++|+++++++|.. ++.+++ +..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 3444444444444444444444555555555555 222 3333334445555555555321 122333 34444455
Q ss_pred EEEcCCCCC
Q 037732 208 ELYMGPRSF 216 (350)
Q Consensus 208 ~L~l~~~~~ 216 (350)
.|++..|..
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555554443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.44 E-value=0.0016 Score=30.12 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=9.6
Q ss_pred CcceEEEEeCccceecc
Q 037732 329 SQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 329 ~~L~~L~l~~~~~~~~p 345 (350)
++|+.|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46777788877777766
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.33 E-value=0.00076 Score=63.52 Aligned_cols=14 Identities=0% Similarity=-0.149 Sum_probs=7.8
Q ss_pred cccCccceEEEEeC
Q 037732 273 EYADIWCREFKIDL 286 (350)
Q Consensus 273 ~~~~~~L~~L~l~~ 286 (350)
...++.++.+.+..
T Consensus 358 ~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSY 371 (482)
T ss_pred HhcCCCcchhhhhh
Confidence 34555566655555
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.27 E-value=0.018 Score=43.45 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=33.3
Q ss_pred HhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCcc
Q 037732 107 FERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLR 182 (350)
Q Consensus 107 ~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~ 182 (350)
|.++.+|+.+.+.. .+..++. .|..+.+|+.+.+..+ +.. -..+..+.+++.+.+.. .+..++. .+..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444442 2222222 2344444555544442 222 12334444455555533 2333332 233355555
Q ss_pred EEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732 183 LLDLRDCMELEVIPPNILSNLSHLEELYMG 212 (350)
Q Consensus 183 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (350)
.+.+.. + +..++...+.++ +|+.+.+.
T Consensus 85 ~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPS-N-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETT-T--BEEHTTTTTT--T--EEE-T
T ss_pred ccccCc-c-ccEEchhhhcCC-CceEEEEC
Confidence 555533 1 333333334444 55555544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.07 E-value=0.025 Score=42.72 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=62.2
Q ss_pred cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccC
Q 037732 80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLK 156 (350)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~ 156 (350)
+.++++|+.+.+ . . ....++...|..+.+++.+.+..+ +..++. .|..++.++.+.+.. .+.. ...+..+.
T Consensus 8 F~~~~~l~~i~~--~-~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITF--P-N-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEE--T-S-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEE--C-C-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 346678888888 3 2 456677777888889999999875 555444 567777899999976 4333 35667789
Q ss_pred CCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCC
Q 037732 157 KLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHL 206 (350)
Q Consensus 157 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 206 (350)
+|+.+.+..+ +..++. .+.++ +++.+.+.. .+..++...+.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 9999999765 666655 45666 888887754 4455565556666655
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0036 Score=31.16 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=10.8
Q ss_pred CcEEEecCCCCcccccccc
Q 037732 158 LAVLCLRGSDIKRLPVEVG 176 (350)
Q Consensus 158 L~~L~l~~~~~~~lp~~l~ 176 (350)
|++|++++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666665555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0084 Score=29.80 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=15.6
Q ss_pred cceEEEEeCccceeccCCC
Q 037732 330 QLKHLYIRGSHLTLNPAES 348 (350)
Q Consensus 330 ~L~~L~l~~~~~~~~p~~~ 348 (350)
+|++|++++|.++.+|+..
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 5788999999999888763
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.16 E-value=0.04 Score=28.56 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=12.7
Q ss_pred CcceEEEEeCccceeccCC
Q 037732 329 SQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 329 ~~L~~L~l~~~~~~~~p~~ 347 (350)
++|+.|+|++|.++.+|++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5667777777777776654
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.16 E-value=0.04 Score=28.56 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=12.7
Q ss_pred CcceEEEEeCccceeccCC
Q 037732 329 SQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 329 ~~L~~L~l~~~~~~~~p~~ 347 (350)
++|+.|+|++|.++.+|++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5667777777777776654
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.68 E-value=0.046 Score=51.46 Aligned_cols=105 Identities=19% Similarity=0.077 Sum_probs=46.6
Q ss_pred CCCccEEeccCCCCCCc--cCcchhCCCCCCcEEEcCCC-CCCcchhhhccccccchhhcCCCceeEEEecC-CCCCCcc
Q 037732 178 LTLLRLLDLRDCMELEV--IPPNILSNLSHLEELYMGPR-SFDKWEVEVEGVKNASLHELKHLISLELQIQD-VNTFPRG 253 (350)
Q Consensus 178 l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~ 253 (350)
++.|+.+.+.+|..+.. +.+. ...++.|++|+++++ ....... .........+++|+.++++.+. +.+..-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSP---LLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccch---hHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 56666666665544443 2222 455666666666652 1111100 0111233444566666666655 3321111
Q ss_pred c---ccCCccEEEEEEcCc------ccccccCccceEEEEeC
Q 037732 254 L---FLEKLETFKILIGGV------WGWEYADIWCREFKIDL 286 (350)
Q Consensus 254 ~---~~~~L~~L~l~~~~~------~~~~~~~~~L~~L~l~~ 286 (350)
. .+++|+.|.+..+.. ......++.|+.|+++.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 1 244555555322221 11234555566666665
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.07 E-value=0.01 Score=48.95 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=50.5
Q ss_pred ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCC
Q 037732 79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKK 157 (350)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~ 157 (350)
++..+.....|++ +.+. ....... |+-+..+..|+++.+.+..+|+.++.+..++.+++..|..+. |.+.++.++
T Consensus 37 ei~~~kr~tvld~--~s~r-~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDL--SSNR-LVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehh--hhhH-HHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 3445566666666 3322 2222222 233455556666666666677766666667777766666666 666677777
Q ss_pred CcEEEecCCCC
Q 037732 158 LAVLCLRGSDI 168 (350)
Q Consensus 158 L~~L~l~~~~~ 168 (350)
+++++..+|.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 77777666644
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=0.058 Score=43.57 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=12.7
Q ss_pred ceEEeecCCcCcC-CCccccCcccccEEEecCC
Q 037732 113 VRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 113 L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~ 144 (350)
++.++-+++.+.. --+.+..+..++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3344444444331 1122334444444444444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.62 E-value=0.22 Score=25.65 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=12.4
Q ss_pred CCCcEEEecCCCCcccccc
Q 037732 156 KKLAVLCLRGSDIKRLPVE 174 (350)
Q Consensus 156 ~~L~~L~l~~~~~~~lp~~ 174 (350)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566677777666666654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.62 E-value=0.22 Score=25.65 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=12.4
Q ss_pred CCCcEEEecCCCCcccccc
Q 037732 156 KKLAVLCLRGSDIKRLPVE 174 (350)
Q Consensus 156 ~~L~~L~l~~~~~~~lp~~ 174 (350)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566677777666666654
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.82 E-value=0.22 Score=25.71 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=12.8
Q ss_pred CcceEEEEeCccceeccC
Q 037732 329 SQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 329 ~~L~~L~l~~~~~~~~p~ 346 (350)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777777775
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=0.084 Score=42.65 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=42.5
Q ss_pred ccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcE
Q 037732 134 SNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEE 208 (350)
Q Consensus 134 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 208 (350)
..++..|-+++.+.. .+.+..++.++.|.+.+| .+.. +..--+-.++|+.|++++|..+++..-..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 456677777776554 577777777777776666 3321 11111123566666666655554433322445555555
Q ss_pred EEcC
Q 037732 209 LYMG 212 (350)
Q Consensus 209 L~l~ 212 (350)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 5544
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.67 E-value=0.018 Score=47.47 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=70.7
Q ss_pred hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEec
Q 037732 108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDL 186 (350)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l 186 (350)
..+...++||++.+.+..+...|+.+..|..|+++.+.+.- |.+.++...+..++...|+.+..|.+.+..+.++.++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 46778889999998888888888888899999999888877 78888888888889888888899999999999998888
Q ss_pred cCCC
Q 037732 187 RDCM 190 (350)
Q Consensus 187 ~~~~ 190 (350)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7643
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.18 E-value=0.46 Score=24.60 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=14.1
Q ss_pred cccceeeeccccccchhhh
Q 037732 301 EGIEDLWLSYLEEQDVNYF 319 (350)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~ 319 (350)
.+|+.|+++.|.++.++++
T Consensus 2 ~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 2 TNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CccCEEECCCCccceecCc
Confidence 5788888888888775443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.66 E-value=0.58 Score=23.48 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=7.9
Q ss_pred CcceEEEEeCcccee
Q 037732 329 SQLKHLYIRGSHLTL 343 (350)
Q Consensus 329 ~~L~~L~l~~~~~~~ 343 (350)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 566666666666543
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=81.57 E-value=0.032 Score=52.19 Aligned_cols=41 Identities=29% Similarity=0.208 Sum_probs=25.7
Q ss_pred cccceeeeccccccc--hhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 301 EGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 301 ~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+.++.++++.|.++. ...+...+ ..+++++.+.+++|++..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l--~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVL--VSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHH--hhhHHHHHhhcccCcccc
Confidence 455777888777753 22234444 456678888888777653
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.84 E-value=2.5 Score=39.75 Aligned_cols=39 Identities=8% Similarity=-0.139 Sum_probs=18.5
Q ss_pred cCccceEEEEeCC--CcccchHH-HHHHhcccceeeecccccc
Q 037732 275 ADIWCREFKIDLD--SKIRLKDG-LILKLEGIEDLWLSYLEEQ 314 (350)
Q Consensus 275 ~~~~L~~L~l~~~--~~~~~~~~-~~~~~~~L~~L~L~~n~l~ 314 (350)
..|+|+.|+|++| .....++- -.+ ...|++|.+.+|.+.
T Consensus 242 ~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred hcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 4456666666665 22221111 111 245666666666543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=74.80 E-value=0.063 Score=50.28 Aligned_cols=161 Identities=21% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCCccEEEecccCCccccccChHHHhcC----CcceEEeecCCcCcC-----CCccccCcccccEEEecCCCCCC----
Q 037732 82 ECPQLELLFICADKESSSLTIPNKFFERM----IQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKLLD---- 148 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~---- 148 (350)
...+|..|++ +.+......-..+...+ ..+++|++..|.++. +...+....+++.++++.|.+..
T Consensus 113 t~~~L~~L~l--~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 113 TLPTLGQLDL--SGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred ccccHhHhhc--ccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 4456666666 44443322111111111 345566666666552 45556666777888888776532
Q ss_pred --chhhh----ccCCCcEEEecCCCCc-----cccccccCCCC-ccEEeccCCCCCCc----cCcchhCCC-CCCcEEEc
Q 037732 149 --ITVIR----DLKKLAVLCLRGSDIK-----RLPVEVGELTL-LRLLDLRDCMELEV----IPPNILSNL-SHLEELYM 211 (350)
Q Consensus 149 --~~~l~----~l~~L~~L~l~~~~~~-----~lp~~l~~l~~-L~~L~l~~~~~~~~----~~~~~l~~l-~~L~~L~l 211 (350)
...+. ...++++|.+++|.++ .+...+...+. +..+++..|..-+. +.+. +..+ ..++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLDL 269 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhhh
Confidence 12233 3667777777777655 12223344444 55567766433221 2222 3444 56788888
Q ss_pred CCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732 212 GPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 248 (350)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 248 (350)
..|++.... ...+.+.+..++.++.+.++.|.+.
T Consensus 270 ~~nsi~~~~---~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 270 SRNSITEKG---VRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcCCccccc---hHHHHHHHhhhHHHHHhhcccCccc
Confidence 888775433 2345566667778888888888753
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.71 E-value=2.6 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=10.8
Q ss_pred cCcceEEEEeCcc
Q 037732 328 PSQLKHLYIRGSH 340 (350)
Q Consensus 328 ~~~L~~L~l~~~~ 340 (350)
+|+|++|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4788999999886
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.65 E-value=2.9 Score=21.92 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.3
Q ss_pred CcceEEEEeCccce
Q 037732 329 SQLKHLYIRGSHLT 342 (350)
Q Consensus 329 ~~L~~L~l~~~~~~ 342 (350)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.39 E-value=18 Score=34.27 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=47.9
Q ss_pred cCccceEEEEeCCCcccchH--HHHHHhcccceeeeccc--cccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 275 ADIWCREFKIDLDSKIRLKD--GLILKLEGIEDLWLSYL--EEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~n--~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+.+.+..+++++|.+..+.. .+....|+|+.|+|++| .+...+.++ .-+..-|+.|-+.|||+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~----K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD----KLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh----hhcCCCHHHeeecCCcccc
Confidence 56788888899987777653 35556799999999999 555433332 2356889999999999753
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=25.95 E-value=61 Score=16.58 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.9
Q ss_pred cceeeeccccccc
Q 037732 303 IEDLWLSYLEEQD 315 (350)
Q Consensus 303 L~~L~L~~n~l~~ 315 (350)
|++|+|....+.+
T Consensus 2 LKtL~L~~v~f~~ 14 (26)
T PF07723_consen 2 LKTLHLDSVVFSD 14 (26)
T ss_pred CeEEEeeEEEECC
Confidence 5566666544433
Done!