Query 037732
Match_columns 350
No_of_seqs 197 out of 3166
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 99.9 5E-26 1.7E-30 211.2 14.1 273 66-346 34-412 (455)
2 4fmz_A Internalin; leucine ric 99.9 1.5E-24 5.1E-29 194.2 21.4 264 66-346 48-328 (347)
3 1xku_A Decorin; proteoglycan, 99.9 5.3E-25 1.8E-29 195.8 18.0 242 85-346 32-280 (330)
4 2id5_A Lingo-1, leucine rich r 99.9 4.2E-25 1.4E-29 206.2 17.5 108 108-216 77-188 (477)
5 4fcg_A Uncharacterized protein 99.9 2.2E-25 7.6E-30 197.8 14.7 223 110-346 80-318 (328)
6 2z80_A TOLL-like receptor 2, v 99.9 3.7E-25 1.3E-29 198.6 16.1 264 67-346 36-318 (353)
7 3o6n_A APL1; leucine-rich repe 99.9 5.7E-25 1.9E-29 200.1 17.4 255 81-346 42-335 (390)
8 3rgz_A Protein brassinosteroid 99.9 5.8E-25 2E-29 216.6 18.7 249 83-347 393-722 (768)
9 4fmz_A Internalin; leucine ric 99.9 5.3E-24 1.8E-28 190.6 22.1 255 66-343 70-347 (347)
10 4ecn_A Leucine-rich repeat pro 99.9 5.6E-25 1.9E-29 216.6 17.0 259 73-347 436-746 (876)
11 2id5_A Lingo-1, leucine rich r 99.9 4E-24 1.4E-28 199.6 20.8 263 68-346 17-313 (477)
12 4eco_A Uncharacterized protein 99.9 2.9E-25 1E-29 214.1 12.6 260 73-347 194-506 (636)
13 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-25 8E-30 196.4 10.6 243 84-344 50-306 (313)
14 3o6n_A APL1; leucine-rich repe 99.9 7.1E-24 2.4E-28 192.8 20.4 264 66-344 49-354 (390)
15 2ft3_A Biglycan; proteoglycan, 99.9 9.7E-25 3.3E-29 194.2 13.4 252 70-342 41-307 (332)
16 3oja_B Anopheles plasmodium-re 99.9 2E-24 6.9E-29 206.9 16.5 254 82-346 49-341 (597)
17 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-24 9.5E-29 204.1 17.2 178 69-250 12-211 (549)
18 3rgz_A Protein brassinosteroid 99.9 2.7E-24 9.1E-29 211.8 17.3 222 112-346 395-697 (768)
19 2z66_A Variable lymphocyte rec 99.9 5.4E-25 1.8E-29 193.6 10.9 229 84-345 28-264 (306)
20 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-24 6.1E-29 190.8 12.9 223 111-347 50-287 (313)
21 3zyj_A Leucine-rich repeat-con 99.9 4.1E-24 1.4E-28 197.5 15.8 223 111-344 64-294 (440)
22 3zyi_A Leucine-rich repeat-con 99.9 5.5E-24 1.9E-28 197.3 15.7 223 111-344 75-305 (452)
23 4ecn_A Leucine-rich repeat pro 99.9 2.1E-24 7.2E-29 212.5 13.4 243 77-338 481-785 (876)
24 1o6v_A Internalin A; bacterial 99.9 3.1E-23 1.1E-27 192.9 20.0 260 67-345 51-347 (466)
25 3t6q_A CD180 antigen; protein- 99.9 1.1E-23 3.7E-28 202.5 16.9 275 66-346 37-393 (606)
26 3oja_B Anopheles plasmodium-re 99.9 2.7E-23 9.1E-28 199.2 19.3 264 66-344 55-360 (597)
27 3v47_A TOLL-like receptor 5B a 99.9 4.1E-24 1.4E-28 198.3 13.3 273 67-348 15-390 (455)
28 4eco_A Uncharacterized protein 99.9 5.7E-24 1.9E-28 205.1 14.3 262 76-347 264-584 (636)
29 3t6q_A CD180 antigen; protein- 99.9 1.4E-23 4.6E-28 201.8 16.6 259 71-346 263-540 (606)
30 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-23 8.3E-28 196.4 17.6 141 66-216 4-150 (520)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-23 9E-28 197.9 17.7 97 67-168 57-158 (562)
32 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-23 9.8E-28 195.9 17.7 108 230-343 369-482 (520)
33 3vq2_A TLR4, TOLL-like recepto 99.9 1E-23 3.4E-28 202.7 14.0 258 68-345 291-561 (606)
34 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-22 4.3E-27 195.0 21.0 119 68-189 38-163 (606)
35 2z80_A TOLL-like receptor 2, v 99.9 5.1E-23 1.8E-27 184.6 17.1 251 82-348 29-296 (353)
36 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5.2E-27 188.3 20.8 110 231-348 283-394 (466)
37 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-23 5.8E-28 198.7 14.6 273 66-347 30-428 (549)
38 1xku_A Decorin; proteoglycan, 99.9 7.6E-23 2.6E-27 181.8 17.3 257 67-343 36-307 (330)
39 2z63_A TOLL-like receptor 4, v 99.9 1E-22 3.5E-27 194.2 17.5 267 68-345 34-412 (570)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.5E-27 192.5 18.8 120 65-190 34-157 (562)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-22 6.1E-27 179.6 15.8 257 65-340 57-331 (332)
42 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-22 8.6E-27 174.7 16.0 214 87-314 14-238 (285)
43 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.6E-27 202.4 15.3 272 68-346 30-379 (844)
44 2z63_A TOLL-like receptor 4, v 99.9 2.3E-22 8E-27 191.7 14.9 144 70-218 15-163 (570)
45 4fcg_A Uncharacterized protein 99.9 2.3E-22 7.9E-27 178.4 13.6 201 132-346 79-295 (328)
46 1p9a_G Platelet glycoprotein I 99.9 3.2E-22 1.1E-26 174.3 13.4 202 80-314 6-208 (290)
47 1ozn_A Reticulon 4 receptor; N 99.9 7.9E-22 2.7E-26 171.6 15.5 259 67-340 16-285 (285)
48 3j0a_A TOLL-like receptor 5; m 99.9 5.2E-22 1.8E-26 197.5 16.2 265 67-347 9-356 (844)
49 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-21 4.7E-26 181.0 17.8 199 69-293 49-249 (457)
50 1wwl_A Monocyte differentiatio 99.9 4.9E-24 1.7E-28 187.9 1.3 217 113-344 65-311 (312)
51 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-21 8.2E-26 184.8 19.7 240 66-345 44-300 (622)
52 3o53_A Protein LRIM1, AGAP0063 99.9 8.1E-23 2.8E-27 180.5 8.7 234 83-337 33-270 (317)
53 1ziw_A TOLL-like receptor 3; i 99.9 9.8E-22 3.4E-26 191.3 17.1 254 79-345 291-600 (680)
54 2z66_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 175.9 12.0 224 87-347 10-241 (306)
55 1ziw_A TOLL-like receptor 3; i 99.9 8.4E-22 2.9E-26 191.8 16.3 258 67-340 9-307 (680)
56 2o6q_A Variable lymphocyte rec 99.9 1.6E-21 5.5E-26 168.2 16.3 177 111-313 37-217 (270)
57 3zyi_A Leucine-rich repeat-con 99.9 1.1E-21 3.9E-26 181.7 15.9 223 112-348 55-285 (452)
58 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-21 1.1E-25 178.3 18.8 176 66-269 68-245 (457)
59 3zyj_A Leucine-rich repeat-con 99.9 1E-21 3.5E-26 181.4 15.4 223 112-348 44-274 (440)
60 1h6u_A Internalin H; cell adhe 99.9 5.3E-21 1.8E-25 168.1 17.5 196 109-346 39-234 (308)
61 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-23 2.3E-27 181.1 4.9 225 97-342 20-250 (317)
62 3oja_A Leucine-rich immune mol 99.9 5.5E-22 1.9E-26 185.1 10.9 216 84-342 34-250 (487)
63 2z62_A TOLL-like receptor 4, v 99.9 1.8E-21 6.2E-26 168.5 12.9 133 112-251 29-165 (276)
64 1jl5_A Outer protein YOPM; leu 99.9 9.1E-21 3.1E-25 175.3 16.7 237 84-343 131-410 (454)
65 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-20 5E-25 181.3 16.6 73 271-347 488-560 (635)
66 1jl5_A Outer protein YOPM; leu 99.8 4.7E-20 1.6E-24 170.5 18.6 171 67-267 96-267 (454)
67 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-20 8.3E-25 177.9 16.7 226 84-347 40-279 (622)
68 1p9a_G Platelet glycoprotein I 99.8 1.6E-20 5.5E-25 163.5 13.9 174 68-254 16-191 (290)
69 3rfs_A Internalin B, repeat mo 99.8 8.7E-21 3E-25 163.8 11.8 207 76-323 33-242 (272)
70 3rfs_A Internalin B, repeat mo 99.8 6.7E-21 2.3E-25 164.5 10.7 198 108-343 38-236 (272)
71 2z62_A TOLL-like receptor 4, v 99.8 4.4E-20 1.5E-24 159.8 14.9 213 71-314 16-237 (276)
72 2o6q_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 155.7 15.7 158 84-252 37-198 (270)
73 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.8E-24 159.7 14.9 173 74-265 31-203 (308)
74 1wwl_A Monocyte differentiatio 99.8 2.8E-20 9.5E-25 163.9 9.8 220 86-315 65-310 (312)
75 3oja_A Leucine-rich immune mol 99.8 2.6E-20 8.8E-25 173.9 9.4 200 110-348 33-233 (487)
76 4glp_A Monocyte differentiatio 99.8 9.4E-20 3.2E-24 160.4 10.9 205 109-343 89-308 (310)
77 2xwt_C Thyrotropin receptor; s 99.8 8E-20 2.7E-24 154.7 9.9 202 99-340 23-237 (239)
78 2xwt_C Thyrotropin receptor; s 99.8 1.9E-19 6.6E-24 152.3 11.3 206 71-311 20-236 (239)
79 3m19_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 147.9 15.0 176 112-315 15-193 (251)
80 2ca6_A RAN GTPase-activating p 99.8 6.5E-20 2.2E-24 166.4 6.4 192 131-344 91-318 (386)
81 1z7x_W Ribonuclease inhibitor; 99.8 7.1E-20 2.4E-24 170.0 4.4 107 234-342 255-383 (461)
82 1z7x_W Ribonuclease inhibitor; 99.8 6.6E-20 2.3E-24 170.2 3.9 259 79-344 108-413 (461)
83 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.7E-23 152.1 11.3 128 109-250 44-171 (291)
84 4glp_A Monocyte differentiatio 99.8 6.2E-19 2.1E-23 155.1 8.4 201 82-315 89-308 (310)
85 2ast_B S-phase kinase-associat 99.8 1.5E-19 5.3E-24 160.8 4.3 103 111-214 70-178 (336)
86 2ca6_A RAN GTPase-activating p 99.8 2.2E-19 7.5E-24 162.9 5.0 238 80-338 56-339 (386)
87 4g8a_A TOLL-like receptor 4; l 99.7 8.9E-18 3.1E-22 161.8 14.0 245 81-343 325-581 (635)
88 3goz_A Leucine-rich repeat-con 99.7 1.9E-18 6.4E-23 155.4 8.1 67 276-344 224-299 (362)
89 1m9s_A Internalin B; cell inva 99.7 5.6E-18 1.9E-22 161.4 10.6 172 108-315 40-211 (605)
90 3cvr_A Invasion plasmid antige 99.7 1.9E-17 6.4E-22 156.2 13.5 191 84-323 59-250 (571)
91 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 141.6 15.1 178 73-269 35-212 (291)
92 2ast_B S-phase kinase-associat 99.7 8.8E-19 3E-23 155.8 4.0 223 84-323 70-313 (336)
93 3m19_A Variable lymphocyte rec 99.7 2.1E-16 7.3E-21 134.5 16.3 170 85-268 15-190 (251)
94 3goz_A Leucine-rich repeat-con 99.7 2.8E-18 9.4E-23 154.3 4.3 225 84-316 22-299 (362)
95 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.4E-22 141.0 9.4 126 110-250 18-143 (263)
96 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.8E-21 130.5 12.8 132 109-251 42-175 (197)
97 3cvr_A Invasion plasmid antige 99.7 2.3E-16 8E-21 148.8 15.2 94 110-216 99-192 (571)
98 2o6s_A Variable lymphocyte rec 99.7 3.1E-16 1E-20 129.6 13.0 172 115-323 11-185 (208)
99 4ay9_X Follicle-stimulating ho 99.7 7.9E-17 2.7E-21 144.1 10.1 220 99-338 21-255 (350)
100 1m9s_A Internalin B; cell inva 99.7 2.2E-16 7.6E-21 150.4 13.4 166 81-265 40-205 (605)
101 3ogk_B Coronatine-insensitive 99.7 7.2E-17 2.5E-21 154.4 9.0 65 276-343 462-527 (592)
102 4ezg_A Putative uncharacterize 99.7 5.5E-16 1.9E-20 127.0 12.4 152 81-249 41-195 (197)
103 3ogk_B Coronatine-insensitive 99.7 3.8E-16 1.3E-20 149.4 11.9 250 82-343 190-502 (592)
104 2xot_A Amphoterin-induced prot 99.7 1.1E-15 3.7E-20 137.3 14.0 129 115-253 22-154 (361)
105 1xeu_A Internalin C; cellular 99.7 1E-15 3.6E-20 131.1 13.1 161 71-251 28-188 (263)
106 2v9t_B SLIT homolog 2 protein 99.6 5.8E-16 2E-20 129.1 10.4 149 137-313 14-164 (220)
107 4ay9_X Follicle-stimulating ho 99.6 6.5E-16 2.2E-20 138.1 11.3 217 114-346 12-241 (350)
108 2xot_A Amphoterin-induced prot 99.6 7.6E-16 2.6E-20 138.3 10.3 176 136-343 20-203 (361)
109 2v9t_B SLIT homolog 2 protein 99.6 5E-15 1.7E-19 123.4 13.8 129 115-253 15-146 (220)
110 2o6s_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 123.1 12.1 164 71-253 16-184 (208)
111 3e6j_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 121.0 15.6 130 113-253 21-153 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-15 7.1E-20 125.7 9.5 151 136-314 13-166 (220)
113 2ell_A Acidic leucine-rich nuc 99.6 4.5E-15 1.5E-19 118.3 10.9 139 110-253 23-165 (168)
114 2p1m_B Transport inhibitor res 99.6 6.5E-16 2.2E-20 147.8 5.9 64 276-342 455-519 (594)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 1.1E-14 3.7E-19 121.3 12.6 147 87-247 14-165 (220)
116 2p1m_B Transport inhibitor res 99.6 5.8E-16 2E-20 148.2 4.7 249 83-337 104-405 (594)
117 3e6j_A Variable lymphocyte rec 99.6 2.9E-14 9.8E-19 119.5 14.4 129 111-248 40-172 (229)
118 2je0_A Acidic leucine-rich nuc 99.5 2.7E-14 9.2E-19 111.3 7.9 123 111-242 17-147 (149)
119 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.7E-18 110.1 11.0 133 82-219 22-162 (168)
120 1dce_A Protein (RAB geranylger 99.5 7.2E-16 2.5E-20 146.0 -2.3 107 136-252 443-550 (567)
121 4b8c_D Glucose-repressible alc 99.5 3.4E-14 1.2E-18 138.5 9.2 118 122-249 212-330 (727)
122 1w8a_A SLIT protein; signaling 99.5 1.7E-13 5.8E-18 111.6 11.4 124 114-247 11-138 (192)
123 4b8c_D Glucose-repressible alc 99.5 2.5E-14 8.6E-19 139.4 6.5 138 102-248 215-354 (727)
124 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.4E-18 111.3 8.4 132 109-246 17-151 (176)
125 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.8E-18 110.4 7.8 137 74-216 9-152 (176)
126 2wfh_A SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 106.8 12.7 123 87-216 13-138 (193)
127 2je0_A Acidic leucine-rich nuc 99.4 2.4E-13 8.2E-18 105.9 8.3 125 83-212 16-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.4 8.4E-13 2.9E-17 107.5 11.6 125 114-248 13-139 (193)
129 1w8a_A SLIT protein; signaling 99.4 9.4E-13 3.2E-17 107.1 10.4 124 87-217 11-139 (192)
130 2o6r_A Variable lymphocyte rec 99.4 5.7E-12 1.9E-16 101.0 12.7 123 87-216 10-136 (177)
131 1dce_A Protein (RAB geranylger 99.4 2.1E-12 7.1E-17 122.3 11.8 122 112-241 442-566 (567)
132 1ds9_A Outer arm dynein; leuci 99.3 3.4E-14 1.1E-18 116.4 -2.8 155 85-247 24-184 (198)
133 2o6r_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 98.0 12.2 128 113-250 9-139 (177)
134 3sb4_A Hypothetical leucine ri 99.3 5E-12 1.7E-16 111.8 8.5 99 233-336 224-328 (329)
135 4fdw_A Leucine rich hypothetic 99.3 8.1E-11 2.8E-15 106.6 16.1 234 84-345 113-361 (401)
136 1ds9_A Outer arm dynein; leuci 99.2 3.7E-14 1.3E-18 116.1 -7.5 132 109-249 16-154 (198)
137 2r9u_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 95.3 10.9 101 114-217 15-118 (174)
138 3g39_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 94.7 10.8 102 113-217 11-115 (170)
139 3sb4_A Hypothetical leucine ri 99.2 7.9E-12 2.7E-16 110.6 6.1 249 83-347 24-315 (329)
140 4fdw_A Leucine rich hypothetic 99.1 3.6E-10 1.2E-14 102.3 12.3 235 84-342 135-383 (401)
141 2r9u_A Variable lymphocyte rec 99.1 4.9E-10 1.7E-14 89.3 10.3 108 136-253 14-123 (174)
142 3g39_A Variable lymphocyte rec 99.1 4.7E-10 1.6E-14 89.1 9.9 107 135-251 10-118 (170)
143 3un9_A NLR family member X1; l 99.0 2E-11 7E-16 109.5 -0.7 106 110-216 71-195 (372)
144 3un9_A NLR family member X1; l 99.0 9.4E-11 3.2E-15 105.2 2.1 160 84-249 72-253 (372)
145 2ifg_A High affinity nerve gro 98.9 5.7E-09 2E-13 92.7 10.1 90 98-189 20-113 (347)
146 2ra8_A Uncharacterized protein 98.7 5.8E-08 2E-12 86.4 11.3 40 275-315 277-321 (362)
147 2ifg_A High affinity nerve gro 98.7 3.3E-08 1.1E-12 87.8 9.3 102 138-249 12-117 (347)
148 2ra8_A Uncharacterized protein 98.7 6.8E-08 2.3E-12 86.0 9.5 137 106-247 167-319 (362)
149 4fs7_A Uncharacterized protein 98.4 1.7E-06 5.8E-11 78.2 10.6 246 79-339 66-376 (394)
150 3e4g_A ATP synthase subunit S, 98.3 3.1E-07 1.1E-11 72.3 3.8 82 111-193 61-153 (176)
151 1io0_A Tropomodulin; LRR prote 98.3 4.7E-07 1.6E-11 72.7 4.7 109 107-216 32-163 (185)
152 4fs7_A Uncharacterized protein 98.3 3.4E-06 1.1E-10 76.2 10.5 97 230-334 292-393 (394)
153 4gt6_A Cell surface protein; l 98.3 2E-05 6.7E-10 71.1 14.7 75 85-164 65-145 (394)
154 1io0_A Tropomodulin; LRR prote 98.2 4.6E-07 1.6E-11 72.7 3.4 119 126-248 28-164 (185)
155 3e4g_A ATP synthase subunit S, 98.2 1.8E-06 6.3E-11 67.9 5.4 83 134-216 61-151 (176)
156 3rw6_A Nuclear RNA export fact 98.0 6.3E-06 2.2E-10 69.7 5.9 78 132-210 168-257 (267)
157 4gt6_A Cell surface protein; l 98.0 4.4E-05 1.5E-09 68.8 11.8 106 79-186 82-189 (394)
158 3rw6_A Nuclear RNA export fact 97.8 2.8E-05 9.7E-10 65.7 6.0 87 153-241 167-257 (267)
159 4h09_A Hypothetical leucine ri 97.8 0.00084 2.9E-08 59.9 16.1 101 230-337 235-341 (379)
160 4h09_A Hypothetical leucine ri 97.5 0.0027 9.2E-08 56.6 15.3 247 82-345 44-325 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0029 9.9E-08 50.6 5.3 80 109-188 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0032 1.1E-07 50.3 5.4 116 130-246 37-168 (197)
163 2a5y_B CED-4; apoptosis; HET: 96.4 0.00075 2.6E-08 63.5 1.1 58 1-64 399-472 (549)
164 3rfe_A Platelet glycoprotein I 96.2 0.0015 5E-08 48.7 1.4 55 281-343 12-69 (130)
165 3rfe_A Platelet glycoprotein I 95.5 0.028 9.7E-07 41.6 6.0 32 135-166 32-65 (130)
166 3sfz_A APAF-1, apoptotic pepti 82.8 1.1 3.8E-05 46.1 4.9 48 4-63 394-452 (1249)
167 1vt4_I APAF-1 related killer D 70.1 2.8 9.5E-05 42.3 3.3 42 4-56 386-436 (1221)
168 1z6t_A APAF-1, apoptotic prote 42.5 25 0.00085 32.8 4.7 45 4-60 394-449 (591)
169 2lz0_A Uncharacterized protein 35.9 51 0.0017 22.5 4.3 12 175-186 16-27 (100)
170 2lz0_A Uncharacterized protein 35.5 36 0.0012 23.3 3.4 13 107-119 16-28 (100)
171 2kzc_A Uncharacterized protein 21.8 37 0.0013 22.5 1.4 31 5-38 8-38 (85)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5e-26 Score=211.19 Aligned_cols=273 Identities=15% Similarity=0.214 Sum_probs=169.0
Q ss_pred eeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEec
Q 037732 66 VFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLY 142 (350)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~ 142 (350)
.+.++.+.+..++ .+.++++|++|++ +.+.....++...+..+++|++|++++|.+.. .|..+.++++|++|+++
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKV--EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEEC--CCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred EEEecCCccCcCChhHhccCccccEEEC--cCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 3445555666553 4567888888888 55555556655556778888888888888876 46778888888888888
Q ss_pred CCCCCC--chh--hhccCCCcEEEecCCCCccc-ccc-ccCCCCccEEeccCCCCCCccCcchhC---------------
Q 037732 143 NCKLLD--ITV--IRDLKKLAVLCLRGSDIKRL-PVE-VGELTLLRLLDLRDCMELEVIPPNILS--------------- 201 (350)
Q Consensus 143 ~~~l~~--~~~--l~~l~~L~~L~l~~~~~~~l-p~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~--------------- 201 (350)
+|.+.+ +.. +..+++|++|++++|.+..+ |.. +.++++|++|++++|......+.. +.
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTC
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccC
Confidence 888876 433 78888888888888888766 444 778888888888885543332322 22
Q ss_pred -------------------CCCCCcEEEcCCCCCCcchhh----------------------------------------
Q 037732 202 -------------------NLSHLEELYMGPRSFDKWEVE---------------------------------------- 222 (350)
Q Consensus 202 -------------------~l~~L~~L~l~~~~~~~~~~~---------------------------------------- 222 (350)
.+++|++|++++|.+......
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence 235677777777655321110
Q ss_pred ----------------hccccccchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCcc----cccccCccce
Q 037732 223 ----------------VEGVKNASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVW----GWEYADIWCR 280 (350)
Q Consensus 223 ----------------~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~ 280 (350)
+.+..+..++.+++|+.|++++|.+..++. .+ .+++|++|++..+.+. ..++.+++|+
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 011123445555666666666666554432 33 4566666666544432 2355566666
Q ss_pred EEEEeCCCcccc-hHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 281 EFKIDLDSKIRL-KDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 281 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
.|++++|..... |.++. .+++|+.|++++|.++++ .+..+ ..+++|+.|++++|++++..+
T Consensus 351 ~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSV--PDGIF--DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCC--CTTTT--TTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCcccccChhhcc-ccccccEEECCCCccccC--CHhHh--ccCCcccEEEccCCCcccCCC
Confidence 666666655554 22333 346666666666666652 12233 456666666666666666544
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.5e-24 Score=194.19 Aligned_cols=264 Identities=15% Similarity=0.183 Sum_probs=174.2
Q ss_pred eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732 66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 145 (350)
.+.+.+..+..++.+..+++|++|++ +.+ ....++. +..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l--~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNL--NGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEEC--CSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred EEEEeCCccccchhhhhcCCccEEEc--cCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 34455566666676777778888888 333 3444444 457778888888877777664 47777788888888777
Q ss_pred CCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc-
Q 037732 146 LLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE- 224 (350)
Q Consensus 146 l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~- 224 (350)
+...+.+..+++|++|++++|.....+..+..+++|+.|++++|. +..++. +..+++|++|++++|.+...+. ..
T Consensus 122 i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~ 197 (347)
T 4fmz_A 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDISP-LAS 197 (347)
T ss_dssp CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGG
T ss_pred ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccccccc-ccC
Confidence 777444777777777777777433333346667777777776633 333333 4566666666666665543332 00
Q ss_pred --------------cccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEEEEeCCC
Q 037732 225 --------------GVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREFKIDLDS 288 (350)
Q Consensus 225 --------------~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~ 288 (350)
...+ .+..+++|+.|++++|.+..++....+++|++|++..+.+.. .+..+++|+.|++++|.
T Consensus 198 l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCccceeecccCCCCCCc-hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence 0111 166777888888888887777662267888888886655432 46677888888888877
Q ss_pred cccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 289 KIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 289 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
...++. ...+++|+.|++++|.+++. .+..+ ..+++|+.|++++|+++.+|+
T Consensus 277 l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 277 ISDISV--LNNLSQLNSLFLNNNQLGNE--DMEVI--GGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECCSSCCCGG--GHHHH--HTCTTCSEEECCSSSCCCCGG
T ss_pred cCCChh--hcCCCCCCEEECcCCcCCCc--ChhHh--hccccCCEEEccCCccccccC
Confidence 666642 33468888888888888764 45556 668888888888888887765
No 3
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=5.3e-25 Score=195.77 Aligned_cols=242 Identities=15% Similarity=0.255 Sum_probs=138.1
Q ss_pred CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEE
Q 037732 85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVL 161 (350)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L 161 (350)
+++.+++ .+.....+|..+ .++++.|++++|.++.++. .|..+++|++|++++|.+.. +..++.+++|++|
T Consensus 32 ~l~~l~~---~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQC---SDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEEC---TTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEe---cCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 5566666 223344455432 2456666666666665443 46666666666666666655 4556666666666
Q ss_pred EecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732 162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE 241 (350)
Q Consensus 162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 241 (350)
++++|.+..+|..+. ++|++|++++ +.+..++...+.++++|++|++++|.+.. .+..+..+.++++|+.|+
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEE
T ss_pred ECCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhccCCCCcCEEE
Confidence 666666666665443 5666666666 33444444445666666666666665532 123344566666666666
Q ss_pred EEecCCCCCCcccccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchh
Q 037732 242 LQIQDVNTFPRGLFLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVN 317 (350)
Q Consensus 242 l~~~~~~~l~~~~~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 317 (350)
+++|.+..+|..+. ++|++|++..+.+ +..+..+++|+.|++++|.....+......+++|+.|++++|.++.
T Consensus 178 l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 254 (330)
T 1xku_A 178 IADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-- 254 (330)
T ss_dssp CCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--
T ss_pred CCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--
Confidence 66666666655542 5666666644432 2245556666666666655554443222234666666666666654
Q ss_pred hhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 318 YFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 318 ~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
+|..+ ..+++|+.|++++|+++.+|+
T Consensus 255 -lp~~l--~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 255 -VPGGL--ADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp -CCTTT--TTCSSCCEEECCSSCCCCCCT
T ss_pred -CChhh--ccCCCcCEEECCCCcCCccCh
Confidence 45445 456666666666666666554
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.2e-25 Score=206.22 Aligned_cols=108 Identities=25% Similarity=0.339 Sum_probs=49.1
Q ss_pred hcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccE
Q 037732 108 ERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRL 183 (350)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~ 183 (350)
.++++|++|++++|.+..+|. .|..+++|++|++++|.+.. +..+..+++|++|++++|.+..++ ..+..+++|++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 344555555555554444433 23444555555555554444 234444455555555544444332 23444455555
Q ss_pred EeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732 184 LDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 184 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
|++++| .+..++...+.++++|+.|++++|.+
T Consensus 157 L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 157 LTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence 555442 23333333344444555555544444
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.2e-25 Score=197.79 Aligned_cols=223 Identities=18% Similarity=0.180 Sum_probs=167.9
Q ss_pred CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732 110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD 188 (350)
Q Consensus 110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 188 (350)
...++.|+++++.+..+|..+.++++|++|++++|.+.. |..++.+++|++|++++|.+..+|..+.++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 467777777777777777777777777788877777776 6667777778888887777777777777777788888777
Q ss_pred CCCCCccCcchhC---------CCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc-ccCC
Q 037732 189 CMELEVIPPNILS---------NLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEK 258 (350)
Q Consensus 189 ~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~ 258 (350)
|+..+.+|.. +. ++++|++|++++|.+ . .+|..++++++|+.|++++|.+..+|..+ .+++
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l-------~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI-------R-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC-------C-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCc-------C-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 7666666665 33 377888888887776 2 55566777888888888888887777776 6777
Q ss_pred ccEEEEEEcC----cccccccCccceEEEEeCC-CcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceE
Q 037732 259 LETFKILIGG----VWGWEYADIWCREFKIDLD-SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKH 333 (350)
Q Consensus 259 L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~ 333 (350)
|++|++..+. ++..++.+++|+.|++++| ....+|..+.. +++|+.|+|++|.+.+. +|..+ ..+++|+.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~--iP~~l--~~L~~L~~ 305 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSR--LPSLI--AQLPANCI 305 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCC--CCGGG--GGSCTTCE
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhh--ccHHH--hhccCceE
Confidence 8888876543 3445778899999999984 55567766654 69999999999888773 88888 78999999
Q ss_pred EEEeCccceeccC
Q 037732 334 LYIRGSHLTLNPA 346 (350)
Q Consensus 334 L~l~~~~~~~~p~ 346 (350)
+++..+.+..++.
T Consensus 306 l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 306 ILVPPHLQAQLDQ 318 (328)
T ss_dssp EECCGGGSCC---
T ss_pred EeCCHHHHHHHhh
Confidence 9999887766554
No 6
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.7e-25 Score=198.62 Aligned_cols=264 Identities=15% Similarity=0.175 Sum_probs=211.3
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 145 (350)
.......+..+|.. -.+++++|++ +.+ ....++...+..+++|+.|++++|.++.+ |..|..+++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l--~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDL--SNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEEC--TTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccc-ccccCcEEEC--CCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 34455677777752 2368999999 444 45566665567899999999999999875 5679999999999999999
Q ss_pred CCC-ch-hhhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732 146 LLD-IT-VIRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV 221 (350)
Q Consensus 146 l~~-~~-~l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 221 (350)
++. +. .++.+++|++|++++|.+..+|. .+..+++|++|++++|..+..++...++++++|++|++++|.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l----- 186 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL----- 186 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-----
Confidence 988 54 48899999999999999999887 6889999999999997667777655589999999999999988
Q ss_pred hhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCcccc-------cccCccceEEEEeCCCcc--
Q 037732 222 EVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWGW-------EYADIWCREFKIDLDSKI-- 290 (350)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~-------~~~~~~L~~L~l~~~~~~-- 290 (350)
.+..+..++.+++|+.|++++|.+..+|..+ .+++|+.|++..+.+... ......++.+++..+...
T Consensus 187 --~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 187 --QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp --CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred --CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 4556788999999999999999998887765 478999999987664331 234567888888875433
Q ss_pred ---cchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 291 ---RLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 291 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
.+|.++.. +++|+.|++++|.++. +|..+. ..+++|+.|++++|++++.++
T Consensus 265 ~l~~l~~~l~~-l~~L~~L~Ls~N~l~~---i~~~~~-~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQ-ISGLLELEFSRNQLKS---VPDGIF-DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHT-CTTCCEEECCSSCCCC---CCTTTT-TTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhc-ccCCCEEECCCCCCCc---cCHHHH-hcCCCCCEEEeeCCCccCcCC
Confidence 35655554 6999999999999997 665431 678999999999999988654
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.7e-25 Score=200.07 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=168.4
Q ss_pred CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732 81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK 157 (350)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~ 157 (350)
..+++++.+.+ .+.....+|..++..+++|++|++++|.+..++ ..+..+++|++|++++|.+.. +..++.+++
T Consensus 42 ~~l~~l~~l~l---~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEE---ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEe---cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 35678888888 445577788877778888888888888887654 478888888888888888877 456788888
Q ss_pred CcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccc---------c
Q 037732 158 LAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV---------K 227 (350)
Q Consensus 158 L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------~ 227 (350)
|++|++++|.+..+|.. +.++++|++|++++|. +..+++..+.++++|++|++++|.+...+...... .
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc
Confidence 88888888888888876 4788888888888844 44454444788888888888888775432100000 0
Q ss_pred ccchhhc---------------------CCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc----ccccccCccceE
Q 037732 228 NASLHEL---------------------KHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV----WGWEYADIWCRE 281 (350)
Q Consensus 228 ~~~l~~l---------------------~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~ 281 (350)
...+... ++|+.|++++|.+...+ .+ .+++|++|++..+.+ +..+..+++|+.
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 0001111 23444555555544432 22 456666666655443 224556677777
Q ss_pred EEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 282 FKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 282 L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
|++++|....+|.... .+++|+.|++++|.++. +|..+ ..+++|+.|++++|+++.+|.
T Consensus 277 L~L~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~---~~~~~--~~l~~L~~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 277 LYISNNRLVALNLYGQ-PIPTLKVLDLSHNHLLH---VERNQ--PQFDRLENLYLDHNSIVTLKL 335 (390)
T ss_dssp EECCSSCCCEEECSSS-CCTTCCEEECCSSCCCC---CGGGH--HHHTTCSEEECCSSCCCCCCC
T ss_pred EECCCCcCcccCcccC-CCCCCCEEECCCCccee---cCccc--cccCcCCEEECCCCccceeCc
Confidence 7777766655554332 24677777777777765 45555 556777777777777776653
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.8e-25 Score=216.56 Aligned_cols=249 Identities=21% Similarity=0.224 Sum_probs=204.0
Q ss_pred CCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCCCc
Q 037732 83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLA 159 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~ 159 (350)
+++|++|++ +.+...+.+|.. +..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+ +..+..+++|+
T Consensus 393 ~~~L~~L~L--~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYL--QNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEEC--CSSEEEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEEC--CCCccccccCHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 567888888 566655567766 458899999999999887 578889999999999999999886 78889999999
Q ss_pred EEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCc
Q 037732 160 VLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI 238 (350)
Q Consensus 160 ~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 238 (350)
+|++++|.+. .+|..+.++++|+.|++++|...+.+|.. ++++++|++|++++|.+ .+..|..++.+++|+
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF-------SGNIPAELGDCRSLI 541 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGGCTTCC
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcc-------cCcCCHHHcCCCCCC
Confidence 9999999887 67888999999999999997777778877 78999999999999988 678888899999999
Q ss_pred eeEEEecCCC-CCCccc---------------------------------------------------------------
Q 037732 239 SLELQIQDVN-TFPRGL--------------------------------------------------------------- 254 (350)
Q Consensus 239 ~L~l~~~~~~-~l~~~~--------------------------------------------------------------- 254 (350)
.|++++|.+. .+|..+
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 9999988753 344322
Q ss_pred --------ccCCccEEEEEEcC----cccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeeccccccchhhhhh
Q 037732 255 --------FLEKLETFKILIGG----VWGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLSYLEEQDVNYFVN 321 (350)
Q Consensus 255 --------~~~~L~~L~l~~~~----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 321 (350)
.+++|+.|++..+. ++..++.++.|+.|++++|... .+|..+.. +++|+.|+|++|++++. +|.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~N~l~g~--ip~ 698 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGR--IPQ 698 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEC--CCG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCCCcccCc--CCh
Confidence 23567778886543 5567888999999999997665 67777765 59999999999999985 888
Q ss_pred hhcccCcCcceEEEEeCccceeccCC
Q 037732 322 ELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 322 ~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
.+ ..+++|+.|++++|++++.+|+
T Consensus 699 ~l--~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 699 AM--SALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GG--GGCCCCSEEECCSSEEEEECCS
T ss_pred HH--hCCCCCCEEECcCCcccccCCC
Confidence 88 7899999999999999875554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=5.3e-24 Score=190.58 Aligned_cols=255 Identities=17% Similarity=0.191 Sum_probs=175.9
Q ss_pred eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732 66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 145 (350)
.+.+.+..+..++.+..+++|++|++ +.+ ....++. +..+++|++|++++|.+..++. +..+++|++|++++|.
T Consensus 70 ~L~l~~n~i~~~~~~~~l~~L~~L~L--~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 70 YLNLNGNQITDISPLSNLVKLTNLYI--GTN-KITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEEC--CSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred EEEccCCccccchhhhcCCcCCEEEc--cCC-cccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence 44555667777777778888888888 443 3444443 5578888888888887776665 6677777777777774
Q ss_pred CCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcc--------------------hhCCCC
Q 037732 146 LLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPN--------------------ILSNLS 204 (350)
Q Consensus 146 l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~l~~l~ 204 (350)
... ++.+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.- .+..++
T Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 221 (347)
T 4fmz_A 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMT 221 (347)
T ss_dssp TCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred CcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCC
Confidence 333 5556666666666666666655543 5556666666665532 2222220 034556
Q ss_pred CCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEE
Q 037732 205 HLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREF 282 (350)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L 282 (350)
+|++|++++|.+.. .+. +..+++|+.|++++|.+..++....+++|++|++..+.+.. .+..+++|+.|
T Consensus 222 ~L~~L~l~~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (347)
T 4fmz_A 222 RLNSLKIGNNKITD--------LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL 292 (347)
T ss_dssp TCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred cCCEEEccCCccCC--------Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEE
Confidence 66666666665532 222 88899999999999999887543378999999998776543 57789999999
Q ss_pred EEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 283 KIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
++++|.....+......+++|+.|++++|.+++. +. + ..+++|+.|++++|+++.
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~-~--~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI---RP-L--ASLSKMDSADFANQVIKK 347 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC---GG-G--GGCTTCSEESSSCC----
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccc---cC-h--hhhhccceeehhhhcccC
Confidence 9999887766554445579999999999999984 33 5 679999999999999863
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=5.6e-25 Score=216.58 Aligned_cols=259 Identities=12% Similarity=0.147 Sum_probs=197.6
Q ss_pred cccccc-ccCCCCCccEEEecccCCcccc-----------------ccChHH-HhcCCcceEEeecCCcCc-CCCccccC
Q 037732 73 QTNLLL-EVVECPQLELLFICADKESSSL-----------------TIPNKF-FERMIQVRVINFSYMNLL-SLPSSLGL 132 (350)
Q Consensus 73 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~-~lp~~l~~ 132 (350)
.+..+| .+.++++|+.|++ +.+...+ .+|..+ |.++++|+.|++++|.+. .+|..++.
T Consensus 436 ~L~~IP~~l~~L~~L~~L~L--s~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYF--ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred cccchhHHHhcCCCCCEEEC--cCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 444466 4678999999999 6666555 277765 458999999999999866 58999999
Q ss_pred cccccEEEecCCC-CCC---chhhhccC-------CCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcch
Q 037732 133 LSNLQNLSLYNCK-LLD---ITVIRDLK-------KLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNI 199 (350)
Q Consensus 133 l~~L~~L~l~~~~-l~~---~~~l~~l~-------~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~ 199 (350)
+++|++|++++|+ ++. |..++.+. +|++|++++|.+..+|. .++++++|+.|++++|. +..+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~- 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A- 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-
Confidence 9999999999998 774 56677666 99999999999999998 89999999999999955 44888 4
Q ss_pred hCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC-CceeEEEecCCCCCCccc-cc--CCccEEEEEEcCcccccc-
Q 037732 200 LSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVNTFPRGL-FL--EKLETFKILIGGVWGWEY- 274 (350)
Q Consensus 200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~- 274 (350)
++++++|++|++++|.+ . .+|..+.++++ |+.|++++|.+..+|..+ .. ++|+.|++..+.+...+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQI-------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CCTTSEESEEECCSSCC-------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred hcCCCcceEEECcCCcc-------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 89999999999999988 3 66777889998 999999999999888776 33 348888887665422111
Q ss_pred --------cCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcc------cCcCcceEEEEeCcc
Q 037732 275 --------ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK------VGPSQLKHLYIRGSH 340 (350)
Q Consensus 275 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~------~~~~~L~~L~l~~~~ 340 (350)
.+++|+.|++++|....+|..++..+++|+.|+|++|.++. +|..+.. .++++|+.|+|++|.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS---IPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC---CCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc---cChHHhccccccccccCCccEEECCCCC
Confidence 23478888888877777777776666777777777777764 4443311 112366666666666
Q ss_pred ceeccCC
Q 037732 341 LTLNPAE 347 (350)
Q Consensus 341 ~~~~p~~ 347 (350)
++.+|..
T Consensus 740 L~~lp~~ 746 (876)
T 4ecn_A 740 LTSLSDD 746 (876)
T ss_dssp CCCCCGG
T ss_pred CccchHH
Confidence 6666543
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=199.61 Aligned_cols=263 Identities=20% Similarity=0.139 Sum_probs=180.4
Q ss_pred eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCC
Q 037732 68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKL 146 (350)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l 146 (350)
...+..+..+|.. -.++++.|++ +.+. ...++...|..+++|++|++++|.+..+ |..|..+++|++|++++|.+
T Consensus 17 ~c~~~~l~~ip~~-~~~~l~~L~L--~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 17 LCHRKRFVAVPEG-IPTETRLLDL--GKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp ECCSCCCSSCCSC-CCTTCSEEEC--CSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcCCCC-CCCCCcEEEC--CCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 3345567777752 2368999999 4444 5555544467899999999999999874 77899999999999999999
Q ss_pred CC-c-hhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhh
Q 037732 147 LD-I-TVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV 223 (350)
Q Consensus 147 ~~-~-~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 223 (350)
.. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+.++++|++|++++|.+..
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----- 166 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS----- 166 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS-----
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc-----
Confidence 88 4 4578999999999999999865 4578999999999999954 444544348999999999999998843
Q ss_pred ccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCcccchHHHH
Q 037732 224 EGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDGLI 297 (350)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~ 297 (350)
..+..+.++++|+.|++++|.+..++... .+++|++|++..+.... ......+|+.|++++|....+|....
T Consensus 167 --~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 167 --IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp --CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred --cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 33355777888888888888776655433 45667777765543211 11122245555555544444443333
Q ss_pred HHhcccceeeec------------------------cccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 298 LKLEGIEDLWLS------------------------YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 298 ~~~~~L~~L~L~------------------------~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
..+++|+.|+|+ +|.++++ .+..+ ..+++|+.|++++|.++.+|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAF--RGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTB--TTCTTCCEEECCSSCCSCCCG
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE--CHHHh--cCcccCCEEECCCCcCceeCH
Confidence 334445555554 4444442 23334 456666677777766666654
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2.9e-25 Score=214.06 Aligned_cols=260 Identities=11% Similarity=0.128 Sum_probs=200.7
Q ss_pred cccccc-ccCCCCCccEEEecccCCccccc-----------------cChHHH-hcCCcceEEeecCCcCc-CCCccccC
Q 037732 73 QTNLLL-EVVECPQLELLFICADKESSSLT-----------------IPNKFF-ERMIQVRVINFSYMNLL-SLPSSLGL 132 (350)
Q Consensus 73 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~-~lp~~l~~ 132 (350)
.+..+| .+.++++|++|++ +.+...+. +|..+. .++++|++|++++|.+. .+|..+++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~L--s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYM--GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCccCCHHHhcccCCCEEEC--cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 444566 4678999999999 66665553 776641 27999999999999876 58999999
Q ss_pred cccccEEEecCCC-CCC---chhhhcc------CCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchh
Q 037732 133 LSNLQNLSLYNCK-LLD---ITVIRDL------KKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNIL 200 (350)
Q Consensus 133 l~~L~~L~l~~~~-l~~---~~~l~~l------~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l 200 (350)
+++|++|++++|. +++ |..++.+ ++|++|++++|.+..+|. .++++++|++|++++|...+.+| . +
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-F 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-C
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-h
Confidence 9999999999998 874 6777776 999999999999999998 89999999999999966555888 4 7
Q ss_pred CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC-CceeEEEecCCCCCCccc-c--cCCccEEEEEEcCcc----cc
Q 037732 201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVNTFPRGL-F--LEKLETFKILIGGVW----GW 272 (350)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~~~-~--~~~L~~L~l~~~~~~----~~ 272 (350)
+++++|++|++++|.+ . .+|..+..+++ |+.|++++|.+..+|..+ . +++|++|++..+.+. ..
T Consensus 350 ~~l~~L~~L~L~~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 350 GSEIKLASLNLAYNQI-------T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp EEEEEESEEECCSSEE-------E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred CCCCCCCEEECCCCcc-------c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 8999999999999887 3 66777899998 999999999999988876 3 347888888766543 33
Q ss_pred cc-------cCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcc------cCcCcceEEEEeCc
Q 037732 273 EY-------ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVK------VGPSQLKHLYIRGS 339 (350)
Q Consensus 273 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~------~~~~~L~~L~l~~~ 339 (350)
+. .+++|+.|++++|....+|..++..+++|+.|+|++|.++. +|..... ..+++|+.|++++|
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---IPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB---CCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC---cCHHHhccccccccccCCccEEECcCC
Confidence 44 56688888888888778887777666788888888777775 4433211 01226666666666
Q ss_pred cceeccCC
Q 037732 340 HLTLNPAE 347 (350)
Q Consensus 340 ~~~~~p~~ 347 (350)
.++.+|+.
T Consensus 499 ~l~~lp~~ 506 (636)
T 4eco_A 499 KLTKLSDD 506 (636)
T ss_dssp CCCBCCGG
T ss_pred cCCccChh
Confidence 66665543
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.3e-25 Score=196.44 Aligned_cols=243 Identities=12% Similarity=0.123 Sum_probs=201.1
Q ss_pred CCccEEEecccCCcccc--ccChHHHhcCCcceEEeecC-CcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCC
Q 037732 84 PQLELLFICADKESSSL--TIPNKFFERMIQVRVINFSY-MNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKK 157 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~ 157 (350)
.+++.|++ +.+...+ .+|.. +.++++|++|++++ +.+. .+|..+..+++|++|++++|.+.. +..+..+++
T Consensus 50 ~~l~~L~L--~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDL--SGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEE--ECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEEC--CCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 58999999 6666655 67776 45899999999995 7777 589999999999999999999985 788999999
Q ss_pred CcEEEecCCCCc-cccccccCCCCccEEeccCCCCCCccCcchhCCCC-CCcEEEcCCCCCCcchhhhccccccchhhcC
Q 037732 158 LAVLCLRGSDIK-RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLS-HLEELYMGPRSFDKWEVEVEGVKNASLHELK 235 (350)
Q Consensus 158 L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 235 (350)
|++|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|++|++++|.+ .+..|..+..++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l-------~~~~~~~~~~l~ 198 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL-------TGKIPPTFANLN 198 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE-------EEECCGGGGGCC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee-------eccCChHHhCCc
Confidence 999999999888 78889999999999999996655578877 78887 999999999988 667788888887
Q ss_pred CCceeEEEecCCCC-CCccc-ccCCccEEEEEEcCc---ccccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeec
Q 037732 236 HLISLELQIQDVNT-FPRGL-FLEKLETFKILIGGV---WGWEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLS 309 (350)
Q Consensus 236 ~L~~L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~ 309 (350)
|+.|++++|.+.. .|..+ .+++|+.|++..+.+ ...+..+++|++|++++|... ..|.++.. +++|+.|+++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls 276 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVS 276 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECC
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECc
Confidence 9999999998864 44444 688999999965543 234667889999999998776 67766665 6999999999
Q ss_pred cccccchhhhhhhhcccCcCcceEEEEeCccceec
Q 037732 310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLN 344 (350)
Q Consensus 310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 344 (350)
+|.+++. +|. . ..+++|+.|++.+|+..+-
T Consensus 277 ~N~l~~~--ip~-~--~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 277 FNNLCGE--IPQ-G--GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SSEEEEE--CCC-S--TTGGGSCGGGTCSSSEEES
T ss_pred CCccccc--CCC-C--ccccccChHHhcCCCCccC
Confidence 9999873 554 3 5789999999999995554
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=7.1e-24 Score=192.81 Aligned_cols=264 Identities=17% Similarity=0.177 Sum_probs=190.4
Q ss_pred eeeecccccccccc--cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEec
Q 037732 66 VFSATEEQTNLLLE--VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLY 142 (350)
Q Consensus 66 ~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~ 142 (350)
.+.+.+..+..+|. +..+++|++|++ +.+ ....++...+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L--~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNL--NDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEEC--TTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEecCCchhhCChhHhcccccCcEEEC--CCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 34455566777775 457788999988 444 345555544668888999999988888754 457888889999999
Q ss_pred CCCCCC-chh-hhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCC-------------
Q 037732 143 NCKLLD-ITV-IRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHL------------- 206 (350)
Q Consensus 143 ~~~l~~-~~~-l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L------------- 206 (350)
+|.+.. +.. +..+++|++|++++|.+..++. .+..+++|++|++++|. +..++. ..+++|
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---GGCTTCSEEECCSSCCSEE
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc---ccccccceeeccccccccc
Confidence 988888 444 5788889999998888886654 57888888888888843 333332 222333
Q ss_pred ------cEEEcCCCCCCcchhhh---------cc---ccccchhhcCCCceeEEEecCCCCC-Cccc-ccCCccEEEEEE
Q 037732 207 ------EELYMGPRSFDKWEVEV---------EG---VKNASLHELKHLISLELQIQDVNTF-PRGL-FLEKLETFKILI 266 (350)
Q Consensus 207 ------~~L~l~~~~~~~~~~~~---------~~---~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~ 266 (350)
++|++++|.+...+... .+ .....+..+++|+.|++++|.+..+ |..+ .+++|++|++..
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 33333333322111000 00 1124588899999999999998876 4455 689999999977
Q ss_pred cCccc---ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 267 GGVWG---WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 267 ~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+.+.. ....+++|+.|++++|....+|..+.. +++|+.|++++|.++.+ + + ..+++|+.|++++|++.+
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-l~~L~~L~L~~N~i~~~---~--~--~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL---K--L--STHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHH-HTTCSEEECCSSCCCCC---C--C--CTTCCCSEEECCSSCEEH
T ss_pred CcCcccCcccCCCCCCCEEECCCCcceecCccccc-cCcCCEEECCCCcccee---C--c--hhhccCCEEEcCCCCccc
Confidence 66433 456789999999999998889888765 69999999999999883 3 4 678999999999999987
Q ss_pred c
Q 037732 344 N 344 (350)
Q Consensus 344 ~ 344 (350)
.
T Consensus 354 ~ 354 (390)
T 3o6n_A 354 N 354 (390)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=9.7e-25 Score=194.20 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=149.6
Q ss_pred cccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC
Q 037732 70 TEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD 148 (350)
Q Consensus 70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~ 148 (350)
.+..+..+|... .++++.|++ +.+. ...++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 41 ~~~~l~~ip~~~-~~~l~~L~l--~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 116 (332)
T 2ft3_A 41 SDLGLKAVPKEI-SPDTTLLDL--QNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116 (332)
T ss_dssp CSSCCSSCCSCC-CTTCCEEEC--CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred CCCCccccCCCC-CCCCeEEEC--CCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc
Confidence 344455555322 356666666 3333 3344333345666677777776666653 5566666677777777666665
Q ss_pred -chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCC--ccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732 149 -ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELE--VIPPNILSNLSHLEELYMGPRSFDKWEVEVE 224 (350)
Q Consensus 149 -~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 224 (350)
+..+. ++|++|++++|.+..+|.. +..+++|++|++++|.... ..+.. +..+ +|++|++++|.+..
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~~------ 186 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLTG------ 186 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCSS------
T ss_pred cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCCc------
Confidence 43333 5667777766666666543 5666677777776643321 22222 4445 66666666666532
Q ss_pred cccccchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcccchHHHHH
Q 037732 225 GVKNASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKIRLKDGLIL 298 (350)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 298 (350)
+|..+. ++|+.|++++|.+..++. .+ .+++|++|++..+.+. ..+..+++|+.|++++|....+|.++..
T Consensus 187 --l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 262 (332)
T 2ft3_A 187 --IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262 (332)
T ss_dssp --CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG
T ss_pred --cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc
Confidence 222222 567777777777766653 33 5677777777655432 2466777788888887777777766544
Q ss_pred Hhcccceeeeccccccchhhhhhhhcc----cCcCcceEEEEeCccce
Q 037732 299 KLEGIEDLWLSYLEEQDVNYFVNELVK----VGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 299 ~~~~L~~L~L~~n~l~~~~~~~~~l~~----~~~~~L~~L~l~~~~~~ 342 (350)
+++|+.|++++|.++++ -+..+.. ..+++|+.|++.+|++.
T Consensus 263 -l~~L~~L~l~~N~l~~~--~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 -LKLLQVVYLHTNNITKV--GVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp -CTTCCEEECCSSCCCBC--CTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred -CccCCEEECCCCCCCcc--ChhHccccccccccccccceEeecCccc
Confidence 57788888888877763 1122211 11467778888888776
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-24 Score=206.93 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=167.7
Q ss_pred CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732 82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL 158 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L 158 (350)
.+++++.+.+ .+.....+|..++..+++|++|++++|.+..++ ..|..+++|++|++++|.+.. +..++.+++|
T Consensus 49 ~l~~l~~l~l---~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTF---KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEE---SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEe---eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 4577888888 455567788877788888999999888888654 478888889999998888877 3557888888
Q ss_pred cEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc---------ccc
Q 037732 159 AVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG---------VKN 228 (350)
Q Consensus 159 ~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~ 228 (350)
++|++++|.+..+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+...+..... ...
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence 9999888888888876 4788888888888854 4444443378888888888888877543310000 000
Q ss_pred cchhhcC---------------------CCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc----ccccccCccceEE
Q 037732 229 ASLHELK---------------------HLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV----WGWEYADIWCREF 282 (350)
Q Consensus 229 ~~l~~l~---------------------~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L 282 (350)
..+...+ +|+.|++++|.+... ..+ .+++|+.|++..+.+ +..++.+++|+.|
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 0111122 344444444444443 222 456666666655443 2345566677777
Q ss_pred EEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 283 KIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
++++|....+|..+. .+++|+.|+|++|.++. +|..+ ..+++|+.|++++|+++.+|.
T Consensus 284 ~Ls~N~l~~l~~~~~-~l~~L~~L~Ls~N~l~~---i~~~~--~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 284 YISNNRLVALNLYGQ-PIPTLKVLDLSHNHLLH---VERNQ--PQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp ECTTSCCCEEECSSS-CCTTCCEEECCSSCCCC---CGGGH--HHHTTCSEEECCSSCCCCCCC
T ss_pred ECCCCCCCCCCcccc-cCCCCcEEECCCCCCCc---cCccc--ccCCCCCEEECCCCCCCCcCh
Confidence 777766655554432 24677777777777765 55555 556777777777777766653
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.8e-24 Score=204.14 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=124.4
Q ss_pred ecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCC
Q 037732 69 ATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLL 147 (350)
Q Consensus 69 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~ 147 (350)
.+...+..+|... .+++++|++ +.+.. ..++...+..+++|++|++++|.+..+ |..|..+++|++|++++|.+.
T Consensus 12 ~~~~~l~~ip~~~-~~~L~~L~L--s~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 12 GRSRSFTSIPSGL-TAAMKSLDL--SFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp CTTSCCSSCCSCC-CTTCCEEEC--CSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCccccccccC-CCCccEEEC--cCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 3445667777532 378899999 55543 444333356888999999999988864 467888899999999999888
Q ss_pred C-c-hhhhccCCCcEEEecCCCCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhh
Q 037732 148 D-I-TVIRDLKKLAVLCLRGSDIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV 223 (350)
Q Consensus 148 ~-~-~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 223 (350)
. + ..++.+++|++|++++|.+.. .|..++++++|++|++++|...+.++...+.++++|++|++++|.+.......
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 7 4 448889999999999988874 45678888999999998876677777544788888999988888774321100
Q ss_pred cc----------------ccccc-hhhcCCCceeEEEecCCCCC
Q 037732 224 EG----------------VKNAS-LHELKHLISLELQIQDVNTF 250 (350)
Q Consensus 224 ~~----------------~~~~~-l~~l~~L~~L~l~~~~~~~l 250 (350)
.+ ..+.. +..+++|+.|++++|.+..+
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 00 01111 23466777777777776543
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.7e-24 Score=211.83 Aligned_cols=222 Identities=17% Similarity=0.080 Sum_probs=149.9
Q ss_pred cceEEeecCCcCc-CCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCc-cccccccCCCCccEEecc
Q 037732 112 QVRVINFSYMNLL-SLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDLR 187 (350)
Q Consensus 112 ~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l~ 187 (350)
+|+.|++++|.+. .+|..++.+++|++|++++|.+.+ +..++.+++|++|++++|.+. .+|..+..+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 3444444444444 345555666666666666666554 556666666666666666655 556666666667777776
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC-CCCccc-ccCCccEEEEE
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN-TFPRGL-FLEKLETFKIL 265 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~ 265 (350)
+|...+.+|.. ++++++|++|++++|.+ .+.+|..++.+++|+.|++++|.+. .+|..+ .+++|+.|++.
T Consensus 475 ~N~l~~~~p~~-l~~l~~L~~L~L~~N~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 475 FNDLTGEIPSG-LSNCTNLNWISLSNNRL-------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp SSCCCSCCCGG-GGGCTTCCEEECCSSCC-------CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CCcccCcCCHH-HhcCCCCCEEEccCCcc-------CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 65555555555 56677777777777766 5567777778888888888888775 566666 67788888774
Q ss_pred EcC----ccc----------------------------------------------------------------------
Q 037732 266 IGG----VWG---------------------------------------------------------------------- 271 (350)
Q Consensus 266 ~~~----~~~---------------------------------------------------------------------- 271 (350)
.+. ++.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 321 111
Q ss_pred ccccCccceEEEEeCCCcc-cchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 272 WEYADIWCREFKIDLDSKI-RLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
.++.+++|+.|++++|... .+|..+.. +++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|++++.++
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~--ip~~l--~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGS--IPDEV--GDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSC--CCGGG--GGCTTCCEEECCSSCCEECCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhc-cccCCEEeCcCCccCCC--CChHH--hCCCCCCEEECCCCcccCcCC
Confidence 1233567888888886654 57766665 68999999999999874 88888 789999999999999985443
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=5.4e-25 Score=193.60 Aligned_cols=229 Identities=17% Similarity=0.121 Sum_probs=124.3
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC---CccccCcccccEEEecCCCCCC-chhhhccCCCc
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL---PSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLA 159 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~ 159 (350)
+++++|++ +. +....+|..++..+++|++|++++|.+... +..+..+++|++|++++|.+.. +..+..+++|+
T Consensus 28 ~~l~~L~L--~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLEL--ES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEEC--CS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEEC--CC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 35555555 22 223344444444555555555555554432 3344445555555555555444 34455555555
Q ss_pred EEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc-ccccchhhcCC
Q 037732 160 VLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG-VKNASLHELKH 236 (350)
Q Consensus 160 ~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~l~~ 236 (350)
+|++++|.+..++. .+..+++|++|++++|......+.. +.++++|++|++++|.+ .+ ..|..+..+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSF-------QENFLPDIFTELRN 176 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEE-------GGGEECSCCTTCTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCcc-------ccccchhHHhhCcC
Confidence 55555555554432 3455555555555553322222222 44555555555555544 12 23444555555
Q ss_pred CceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccch
Q 037732 237 LISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDV 316 (350)
Q Consensus 237 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 316 (350)
|+.|++++|.+..++. ..+..+++|+.|++++|....++......+++|+.|++++|.+++.
T Consensus 177 L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSP------------------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CCEEECTTSCCCEECT------------------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCEEECCCCCcCCcCH------------------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 5555555555444322 2455677788888888766665543333468888888888888774
Q ss_pred hhhhhhhcccCcC-cceEEEEeCccceecc
Q 037732 317 NYFVNELVKVGPS-QLKHLYIRGSHLTLNP 345 (350)
Q Consensus 317 ~~~~~~l~~~~~~-~L~~L~l~~~~~~~~p 345 (350)
.+..+ ..++ +|+.|++++|++++..
T Consensus 239 --~~~~~--~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 239 --KKQEL--QHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp --SSSSC--CCCCTTCCEEECTTCCEECSG
T ss_pred --CHHHH--HhhhccCCEEEccCCCeeccc
Confidence 45555 5564 8888888888887653
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.8e-24 Score=190.80 Aligned_cols=223 Identities=18% Similarity=0.167 Sum_probs=190.8
Q ss_pred CcceEEeecCCcCc---CCCccccCcccccEEEecC-CCCCC--chhhhccCCCcEEEecCCCCc-cccccccCCCCccE
Q 037732 111 IQVRVINFSYMNLL---SLPSSLGLLSNLQNLSLYN-CKLLD--ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRL 183 (350)
Q Consensus 111 ~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~-~~l~~--~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~ 183 (350)
.+++.|+++++.+. .+|..+..+++|++|++++ |.+.+ |..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999988 4899999999999999995 77765 788999999999999999998 88889999999999
Q ss_pred EeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcC-CCceeEEEecCCC-CCCccc-ccCCcc
Q 037732 184 LDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELK-HLISLELQIQDVN-TFPRGL-FLEKLE 260 (350)
Q Consensus 184 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~~~~-~~~~L~ 260 (350)
|++++|.....+|.. ++++++|++|++++|.+ .+.+|..+..++ +|+.|++++|.+. .+|..+ .+. |+
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcc-------cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 999997666577877 79999999999999998 667888899998 9999999999986 667776 444 99
Q ss_pred EEEEEEcC----cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEE
Q 037732 261 TFKILIGG----VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYI 336 (350)
Q Consensus 261 ~L~l~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l 336 (350)
+|++..+. .+..+..+++|+.|++++|.....+..+. .+++|+.|++++|.+++. +|..+ ..+++|+.|++
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~L 275 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-LSKNLNGLDLRNNRIYGT--LPQGL--TQLKFLHSLNV 275 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC-CCTTCCEEECCSSCCEEC--CCGGG--GGCTTCCEEEC
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccc-ccCCCCEEECcCCcccCc--CChHH--hcCcCCCEEEC
Confidence 99996543 44568889999999999987765544433 469999999999999874 78888 78999999999
Q ss_pred eCcccee-ccCC
Q 037732 337 RGSHLTL-NPAE 347 (350)
Q Consensus 337 ~~~~~~~-~p~~ 347 (350)
++|++++ +|+.
T Consensus 276 s~N~l~~~ip~~ 287 (313)
T 1ogq_A 276 SFNNLCGEIPQG 287 (313)
T ss_dssp CSSEEEEECCCS
T ss_pred cCCcccccCCCC
Confidence 9999994 5543
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=197.46 Aligned_cols=223 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred CcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEec
Q 037732 111 IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDL 186 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l 186 (350)
++++.|++++|.+..+ +..|..+++|++|++++|.+.. +..+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 4455555555555542 2345555555555555555554 2445555555555555555555544 3555555555555
Q ss_pred cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732 187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI 266 (350)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 266 (350)
++ +.+..++...+.++++|++|+++++... ....+..+.++++|+.|++++|.+..+|....+++|+.|++..
T Consensus 144 ~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 144 RN-NPIESIPSYAFNRIPSLRRLDLGELKRL------SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp CS-CCCCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTT
T ss_pred CC-CcccccCHHHhhhCcccCEeCCCCCCCc------ceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCC
Confidence 55 2334444433555555555555553321 1111223555555555555555555555322455555555544
Q ss_pred cCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732 267 GGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 267 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
+.+ +..+..+++|+.|++++|....++...+..+++|+.|+|++|.++.+ .+..+ ..+++|+.|+|++|++.
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL--PHDLF--TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC--CTTTT--SSCTTCCEEECCSSCEE
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc--ChhHh--ccccCCCEEEcCCCCcc
Confidence 332 22466778888888888777766554444568999999999988873 23344 67889999999999887
Q ss_pred ec
Q 037732 343 LN 344 (350)
Q Consensus 343 ~~ 344 (350)
+.
T Consensus 293 Cd 294 (440)
T 3zyj_A 293 CN 294 (440)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=5.5e-24 Score=197.30 Aligned_cols=223 Identities=17% Similarity=0.137 Sum_probs=138.2
Q ss_pred CcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732 111 IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL 186 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l 186 (350)
++++.|++++|.+..+ |..|..+++|++|++++|.+.. +..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566666666666543 4455666666666666666555 34556666666666666666655543 555666666666
Q ss_pred cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732 187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI 266 (350)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 266 (350)
++ +.+..++...+.++++|++|++++|... ....+..+.++++|+.|++++|.+..+|....+++|+.|++..
T Consensus 155 ~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 155 RN-NPIESIPSYAFNRVPSLMRLDLGELKKL------EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CS-CCCCEECTTTTTTCTTCCEEECCCCTTC------CEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CC-CCcceeCHhHHhcCCcccEEeCCCCCCc------cccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 66 3344455444556666666666653331 1111224555666666666666666555433556666666654
Q ss_pred cCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732 267 GGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 267 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
+.+ +..+..+++|+.|++++|....++...+..+++|+.|+|++|.++.+ .+..+ ..+++|+.|++++|++.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PHDLF--TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CTTSS--TTCTTCCEEECCSSCEE
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--ChHHh--ccccCCCEEEccCCCcC
Confidence 443 23566788899999988877766544344568999999999999873 23344 67899999999999987
Q ss_pred ec
Q 037732 343 LN 344 (350)
Q Consensus 343 ~~ 344 (350)
+.
T Consensus 304 Cd 305 (452)
T 3zyi_A 304 CD 305 (452)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.1e-24 Score=212.50 Aligned_cols=243 Identities=16% Similarity=0.167 Sum_probs=167.0
Q ss_pred ccc-cC--CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCc-CcC--CCccccCcc-------cccEEEecC
Q 037732 77 LLE-VV--ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN-LLS--LPSSLGLLS-------NLQNLSLYN 143 (350)
Q Consensus 77 ~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~l~~l~-------~L~~L~l~~ 143 (350)
+|. +. ++++|+.|++ +.+...+.+|.. +.++++|+.|++++|. ++. +|..++.++ +|++|++++
T Consensus 481 iP~~l~f~~L~~L~~L~L--s~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVEL--YNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEE--ESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEEC--cCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 664 33 7899999999 677778888866 4589999999999997 774 777666665 999999999
Q ss_pred CCCCC-ch--hhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCC-CcEEEcCCCCCCcc
Q 037732 144 CKLLD-IT--VIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSH-LEELYMGPRSFDKW 219 (350)
Q Consensus 144 ~~l~~-~~--~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~ 219 (350)
|.+.. |. .++++++|++|++++|.+..+| .++.+++|+.|++++|. +..+|.. +.++++ |++|++++|.+..+
T Consensus 558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTT-SCEECTTCCEEECCSSCCCSC
T ss_pred CcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHH-HhhccccCCEEECcCCCCCcC
Confidence 99888 66 7899999999999999888888 88899999999999854 4478877 788888 99999998887433
Q ss_pred hhhhccccccchhhc-------------------------------CCCceeEEEecCCCCCCccc--ccCCccEEEEEE
Q 037732 220 EVEVEGVKNASLHEL-------------------------------KHLISLELQIQDVNTFPRGL--FLEKLETFKILI 266 (350)
Q Consensus 220 ~~~~~~~~~~~l~~l-------------------------------~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~ 266 (350)
|..+..+ ++|+.|++++|.+..+|..+ .+++|+.|++..
T Consensus 635 --------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 635 --------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp --------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred --------chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 2233222 24555555555555555544 345566666644
Q ss_pred cCccc---c-cc-------cCccceEEEEeCCCcccchHHHH-HHhcccceeeeccccccchhhhhhhhcccCcCcceEE
Q 037732 267 GGVWG---W-EY-------ADIWCREFKIDLDSKIRLKDGLI-LKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHL 334 (350)
Q Consensus 267 ~~~~~---~-~~-------~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L 334 (350)
+.+.. . +. .+++|+.|++++|....+|..+. ..+++|+.|+|++|.+++ +|..+ ..+++|+.|
T Consensus 707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~---lp~~l--~~L~~L~~L 781 (876)
T 4ecn_A 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS---FPTQP--LNSSQLKAF 781 (876)
T ss_dssp CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS---CCCGG--GGCTTCCEE
T ss_pred CcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc---cchhh--hcCCCCCEE
Confidence 43221 1 11 12256666666665555555543 234666666666666665 45455 456666666
Q ss_pred EEeC
Q 037732 335 YIRG 338 (350)
Q Consensus 335 ~l~~ 338 (350)
+|++
T Consensus 782 ~Ls~ 785 (876)
T 4ecn_A 782 GIRH 785 (876)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6654
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.1e-23 Score=192.94 Aligned_cols=260 Identities=18% Similarity=0.219 Sum_probs=136.7
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL 146 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l 146 (350)
+...+..+..++.+..+++|++|++ +.+ ....++. +..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 51 L~l~~~~i~~l~~~~~l~~L~~L~L--s~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 51 LQADRLGIKSIDGVEYLNNLTQINF--SNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEEC--CSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCccCcchhhhcCCCEEEC--CCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC
Confidence 3344555666666667778888887 333 3444444 4577777777777777776665 77777777777777777
Q ss_pred CCchhhhccCCCcEEEecCCCCccccc--------------------cccCCCCccEEeccCCCCCCccCcchhCCCCCC
Q 037732 147 LDITVIRDLKKLAVLCLRGSDIKRLPV--------------------EVGELTLLRLLDLRDCMELEVIPPNILSNLSHL 206 (350)
Q Consensus 147 ~~~~~l~~l~~L~~L~l~~~~~~~lp~--------------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 206 (350)
...+.+..+++|++|++++|.+..++. .+.++++|+.|++++|. +..++. +..+++|
T Consensus 125 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L 201 (466)
T 1o6v_A 125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV--LAKLTNL 201 (466)
T ss_dssp CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTC
T ss_pred CCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh--hccCCCC
Confidence 774447777777777777776665542 13334444444444422 222222 3444445
Q ss_pred cEEEcCCCCCCcchhhhcc---------------ccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc
Q 037732 207 EELYMGPRSFDKWEVEVEG---------------VKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271 (350)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~---------------~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 271 (350)
++|++++|.+..... .+ .....+..+++|+.|++++|.+..++....+++|++|++..+.+..
T Consensus 202 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 279 (466)
T ss_dssp SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC
T ss_pred CEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc
Confidence 555554444422111 00 0001233344444444444444433331134444444444333211
Q ss_pred --ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732 272 --WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 272 --~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
.+..+++|+.|++++|....++. ...+++|+.|++++|.+++. +. + ..+++|+.|++++|+++.+|
T Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---~~-~--~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 280 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---SP-V--SSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp CGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC---GG-G--GGCTTCCEEECCSSCCCCCG
T ss_pred cccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc---hh-h--ccCccCCEeECCCCccCCch
Confidence 13445555555555554444432 22345666666666666553 11 3 45666666666666666553
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.1e-23 Score=202.48 Aligned_cols=275 Identities=15% Similarity=0.135 Sum_probs=167.9
Q ss_pred eeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEec
Q 037732 66 VFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLY 142 (350)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~ 142 (350)
.+.++.+.+..++ .+.++++|++|++ +.+......|.. |.++++|++|++++|.+.. .|..|+.+++|++|+++
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 3444555555553 3557777777777 444433333333 4577777777777777765 45667777777777777
Q ss_pred CCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccCCCCCCccCcchhCCCCCCc--EEEcCCCCCC
Q 037732 143 NCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE--ELYMGPRSFD 217 (350)
Q Consensus 143 ~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~ 217 (350)
+|.+.. +..++.+++|++|++++|.+..++ ..+..+++|++|++++| .+..+++..++.+++|+ +|++++|.+.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccC
Confidence 777776 466777777777777777777542 23444777777777773 34444433366677776 6666666554
Q ss_pred cchhhh--------------------------------------------------------------------cccccc
Q 037732 218 KWEVEV--------------------------------------------------------------------EGVKNA 229 (350)
Q Consensus 218 ~~~~~~--------------------------------------------------------------------~~~~~~ 229 (350)
..+... .+..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 332100 001123
Q ss_pred chhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcc-cchHHHHHHhccc
Q 037732 230 SLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKI-RLKDGLILKLEGI 303 (350)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L 303 (350)
.++.+++|+.|++++|.+..+|..+ .+++|++|++..+.+. ..+..+++|+.|+++++... .++......+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 3667788888888888888888877 6788888888655432 24556677777777765433 3333322235666
Q ss_pred ceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 304 EDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 304 ~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
+.|++++|.+++....+..+ ..+++|+.|++++|+++..++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp CEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECT
T ss_pred CEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCH
Confidence 66666666665531113334 455666666666666555443
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-23 Score=199.15 Aligned_cols=264 Identities=16% Similarity=0.149 Sum_probs=190.3
Q ss_pred eeeecccccccccc--cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEec
Q 037732 66 VFSATEEQTNLLLE--VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLY 142 (350)
Q Consensus 66 ~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~ 142 (350)
.+.+.+..+..+|. +..+++|++|++ +.+. ...++...+..+++|++|++++|.+..+|. .|+.+++|++|+++
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L--~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEEC--TTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEEC--CCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34455556666664 346788899988 4444 445554445688889999999888887554 56888899999999
Q ss_pred CCCCCC-chh-hhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEE----------
Q 037732 143 NCKLLD-ITV-IRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEEL---------- 209 (350)
Q Consensus 143 ~~~l~~-~~~-l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L---------- 209 (350)
+|.+.. ++. ++.+++|++|++++|.+..++. .+..+++|++|++++|. +..++. +.+++|+.|
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG---GGCTTCSEEECCSSCCSEE
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh---hhhhhhhhhhcccCccccc
Confidence 988888 443 5888899999998888886654 57888889999888843 333332 223333333
Q ss_pred ---------EcCCCCCCcchhhhc---------c---ccccchhhcCCCceeEEEecCCCCC-Cccc-ccCCccEEEEEE
Q 037732 210 ---------YMGPRSFDKWEVEVE---------G---VKNASLHELKHLISLELQIQDVNTF-PRGL-FLEKLETFKILI 266 (350)
Q Consensus 210 ---------~l~~~~~~~~~~~~~---------~---~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~ 266 (350)
++++|.+...+.... + ..+..+..+++|+.|++++|.+..+ |..+ .+++|+.|++..
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 333333221111000 0 1235688999999999999999866 4555 789999999976
Q ss_pred cCc---ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 267 GGV---WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 267 ~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+.+ +.....+++|+.|++++|....+|.++.. +++|+.|+|++|.++.+ + + ..+++|+.|++++|++++
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-l~~L~~L~L~~N~l~~~---~--~--~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL---K--L--STHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHH-HTTCSEEECCSSCCCCC---C--C--CTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccCccccc-CCCCCEEECCCCCCCCc---C--h--hhcCCCCEEEeeCCCCCC
Confidence 654 33456789999999999999899988765 69999999999999883 3 4 678999999999999986
Q ss_pred c
Q 037732 344 N 344 (350)
Q Consensus 344 ~ 344 (350)
.
T Consensus 360 ~ 360 (597)
T 3oja_B 360 N 360 (597)
T ss_dssp H
T ss_pred h
Confidence 3
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=4.1e-24 Score=198.28 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=195.6
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CC-CccccCcccccEEEecCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SL-PSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~l~~l~~L~~L~l~~~ 144 (350)
+......+..+|.+ .+++++|++ +.+.. ..++...+.++++|++|++++|.+. .+ +..|..+++|++|++++|
T Consensus 15 ~~c~~~~l~~lp~l--~~~l~~L~L--s~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLHQVPEL--PAHVNYVDL--SLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCSSCCCC--CTTCCEEEC--CSSCC-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcccCCCC--CCccCEEEe--cCCcc-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 33445577788873 379999999 55554 4443333568999999999999886 34 567899999999999999
Q ss_pred CCCC--chhhhccCCCcEEEecCCCCcc-cccc--ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcc
Q 037732 145 KLLD--ITVIRDLKKLAVLCLRGSDIKR-LPVE--VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW 219 (350)
Q Consensus 145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (350)
.+.. +..++.+++|++|++++|.+.. +|.. +..+++|++|++++|......|...+.++++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9987 6789999999999999999884 4444 889999999999996655554655478999999999999987543
Q ss_pred hhhhcccc---------------------------ccchhhcC-------------------------------------
Q 037732 220 EVEVEGVK---------------------------NASLHELK------------------------------------- 235 (350)
Q Consensus 220 ~~~~~~~~---------------------------~~~l~~l~------------------------------------- 235 (350)
.......+ ...+..++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 22100000 00011123
Q ss_pred --------------------------CCceeEEEecCCCCC-Cccc-ccCCccEEEEEEcCc----ccccccCccceEEE
Q 037732 236 --------------------------HLISLELQIQDVNTF-PRGL-FLEKLETFKILIGGV----WGWEYADIWCREFK 283 (350)
Q Consensus 236 --------------------------~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~ 283 (350)
+|+.|++++|.+..+ |..+ .+++|++|++..+.+ +..+..+++|+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 344444444444433 3333 567788888765543 23566788888898
Q ss_pred EeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732 284 IDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES 348 (350)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~ 348 (350)
+++|....++......+++|+.|+|++|.+++. .+..+ ..+++|++|++++|+++.+|+..
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL--GDQSF--LGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE--CTTTT--TTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCccccc--Chhhc--cccccccEEECCCCccccCCHhH
Confidence 888877766443334468899999999988874 45666 77899999999999999888753
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=5.7e-24 Score=205.08 Aligned_cols=262 Identities=14% Similarity=0.118 Sum_probs=177.8
Q ss_pred ccc-ccCCCCCccEEEecccCCc-ccc-ccChHHHhcC------CcceEEeecCCcCcCCCc--cccCcccccEEEecCC
Q 037732 76 LLL-EVVECPQLELLFICADKES-SSL-TIPNKFFERM------IQVRVINFSYMNLLSLPS--SLGLLSNLQNLSLYNC 144 (350)
Q Consensus 76 ~~~-~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~ 144 (350)
.+| .+.++++|++|++ +.+. ..+ .+|..+. .+ ++|++|++++|.++.+|. .++.+++|++|++++|
T Consensus 264 ~~p~~l~~l~~L~~L~L--s~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 264 KLPTFLKALPEMQLINV--ACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCTTTTTCSSCCEEEC--TTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred cChHHHhcCCCCCEEEC--cCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence 445 4668899999999 6665 555 6777654 44 899999999999888888 8999999999999999
Q ss_pred CCCC-chhhhccCCCcEEEecCCCCccccccccCCCC-ccEEeccCCCCCCccCcchhCCCC--CCcEEEcCCCCCCcch
Q 037732 145 KLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTL-LRLLDLRDCMELEVIPPNILSNLS--HLEELYMGPRSFDKWE 220 (350)
Q Consensus 145 ~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~ 220 (350)
.+.+ ++.++.+++|++|++++|.+..+|..+..+++ |++|++++|. +..+|.. +..++ +|++|++++|.+....
T Consensus 341 ~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTT
T ss_pred cCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcc
Confidence 8884 33788888888888888888888888888888 8888888844 4466654 44443 6777777766663211
Q ss_pred hh-h----------------------ccccccc-hhhcCCCceeEEEecCCCCCCccc-c-cC-------CccEEEEEEc
Q 037732 221 VE-V----------------------EGVKNAS-LHELKHLISLELQIQDVNTFPRGL-F-LE-------KLETFKILIG 267 (350)
Q Consensus 221 ~~-~----------------------~~~~~~~-l~~l~~L~~L~l~~~~~~~l~~~~-~-~~-------~L~~L~l~~~ 267 (350)
+. + ...+|.. +..+++|+.|++++|.+..+|... . .. +|++|++..+
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 00 0 0022222 233566666666666666666554 1 11 6666766544
Q ss_pred Cc---ccccc--cCccceEEEEeCCCcccchHHHHHHhcccceeeec------cccccchhhhhhhhcccCcCcceEEEE
Q 037732 268 GV---WGWEY--ADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS------YLEEQDVNYFVNELVKVGPSQLKHLYI 336 (350)
Q Consensus 268 ~~---~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~~~l~~~~~~~L~~L~l 336 (350)
.+ +..+. .+++|+.|++++|....+|..+.. +++|+.|+|+ +|.+.+. +|..+ ..+++|+.|++
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~Ls~N~~ls~N~l~~~--~p~~l--~~l~~L~~L~L 573 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLRE--WPEGI--TLCPSLTQLQI 573 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG-CSSCCEEECCSCBCTTCCBCCCC--CCTTG--GGCSSCCEEEC
T ss_pred cCCccChhhhhccCCCcCEEECCCCCCCCcChhhhc-CCCCCEEECCCCcccccCccccc--ChHHH--hcCCCCCEEEC
Confidence 43 22333 667777777777766666666554 5777777773 4455542 66666 66888888888
Q ss_pred eCccceeccCC
Q 037732 337 RGSHLTLNPAE 347 (350)
Q Consensus 337 ~~~~~~~~p~~ 347 (350)
++|+++.+|..
T Consensus 574 s~N~l~~ip~~ 584 (636)
T 4eco_A 574 GSNDIRKVNEK 584 (636)
T ss_dssp CSSCCCBCCSC
T ss_pred CCCcCCccCHh
Confidence 88888877764
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.4e-23 Score=201.75 Aligned_cols=259 Identities=14% Similarity=0.074 Sum_probs=152.9
Q ss_pred ccccccccc--cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCC
Q 037732 71 EEQTNLLLE--VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLL 147 (350)
Q Consensus 71 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~ 147 (350)
...+..++. +..+++|++|++ +.+ ....+|..+ ..+++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l--~~n-~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDL--TAT-HLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEEC--TTS-CCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred cCccCccCHHHhccccCCCEEec--cCC-ccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 334444442 445667777777 333 344555543 4566777777777766653 445666677777777776655
Q ss_pred C---chhhhccCCCcEEEecCCCCccc---cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732 148 D---ITVIRDLKKLAVLCLRGSDIKRL---PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV 221 (350)
Q Consensus 148 ~---~~~l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 221 (350)
. ...+..+++|++|++++|.+..+ +..+..+++|++|++++|......+.. +..+++|++|++++|.+
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l----- 412 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRL----- 412 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCE-----
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcC-----
Confidence 3 23466667777777777666644 445666777777777664333322333 56667777777776665
Q ss_pred hhccccc-cchhhcCCCceeEEEecCCCCCCc-cc-ccCCccEEEEEEcCcc-------cccccCccceEEEEeCCCccc
Q 037732 222 EVEGVKN-ASLHELKHLISLELQIQDVNTFPR-GL-FLEKLETFKILIGGVW-------GWEYADIWCREFKIDLDSKIR 291 (350)
Q Consensus 222 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-------~~~~~~~~L~~L~l~~~~~~~ 291 (350)
.+..+ ..+..+++|+.|++++|.+...+. .+ .+++|++|++..+.+. ..+..+++|+.|++++|....
T Consensus 413 --~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 413 --KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp --ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred --CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 22222 236667777777777776654433 33 4667777777544321 235566777777777766555
Q ss_pred chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 292 LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 292 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
.+......+++|+.|+|++|.+++. .+..+ ..+++| .|++++|+++.+|+
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~l--~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSS--SIEAL--SHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGG--GGGGG--TTCCSC-EEECCSSCCCCCCG
T ss_pred cChhhhccccCCCEEECCCCccCcC--ChhHh--Cccccc-EEECcCCcccccCH
Confidence 4322222357777777777777663 44555 556666 66666666666554
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=196.39 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=100.5
Q ss_pred eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCC
Q 037732 66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 144 (350)
.+..++..+..+|.... +++++|++ +.+. ...++...+..+++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~L--s~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNI--SQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEEC--CSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCccccccccc-ccccEEEC--CCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 34556667777775333 78888888 4444 4555554567888899999998888864 677888889999999988
Q ss_pred CCCC-chhhhccCCCcEEEecCCCCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCC--cEEEcCCCCC
Q 037732 145 KLLD-ITVIRDLKKLAVLCLRGSDIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL--EELYMGPRSF 216 (350)
Q Consensus 145 ~l~~-~~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 216 (350)
.++. +.. .+++|++|++++|.+.. +|..++++++|++|++++|.... .. +..+++| ++|++++|.+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccc
Confidence 8887 443 78888899998888875 56788888888888888854322 11 4445555 6666666554
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2.6e-23 Score=197.94 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=54.5
Q ss_pred eeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCC
Q 037732 67 FSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 67 ~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 144 (350)
+.++.+.+..++ .+..+++|++|++ +.+. ...++...|..+++|++|++++|.++.+|.. .+++|++|++++|
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRL--SHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN 131 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEEC--CSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS
T ss_pred EECCCCCccccChhhhccCCCccEEEC--CCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC
Confidence 444445555554 3456666666666 3333 3333323344566666666666666655554 5666666666666
Q ss_pred CCCC---chhhhccCCCcEEEecCCCC
Q 037732 145 KLLD---ITVIRDLKKLAVLCLRGSDI 168 (350)
Q Consensus 145 ~l~~---~~~l~~l~~L~~L~l~~~~~ 168 (350)
.+.. +..++++++|++|++++|.+
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CccccCchHhhcccCcccEEecCCCcc
Confidence 6554 24566666666666666544
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=195.88 Aligned_cols=108 Identities=10% Similarity=0.125 Sum_probs=58.1
Q ss_pred chhhcCCCceeEEEecCCCC-CCccc--ccCCccEEEEEEcCcccc-cccC-ccceEEEEeCCCcccchHHHHHHhcccc
Q 037732 230 SLHELKHLISLELQIQDVNT-FPRGL--FLEKLETFKILIGGVWGW-EYAD-IWCREFKIDLDSKIRLKDGLILKLEGIE 304 (350)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~-l~~~~--~~~~L~~L~l~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 304 (350)
.++.+++|+.|++++|.+.. +|... .+++|++|++..+.+... .... ++|+.|++++|....+|.++. .+++|+
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~ 447 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQ 447 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCC
T ss_pred HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCC
Confidence 34445555555555555544 44332 345555555544443221 1111 466666666666666665555 356666
Q ss_pred eeeeccccccchhhhhhh-hcccCcCcceEEEEeCcccee
Q 037732 305 DLWLSYLEEQDVNYFVNE-LVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 305 ~L~L~~n~l~~~~~~~~~-l~~~~~~~L~~L~l~~~~~~~ 343 (350)
.|++++|.++. +|.. + ..+++|+.|++++|++++
T Consensus 448 ~L~L~~N~l~~---l~~~~~--~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 448 ELNVASNQLKS---VPDGIF--DRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCCCC---CCTTTT--TTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcCCc---cCHHHh--ccCCcccEEECcCCCCcc
Confidence 66666666665 4433 4 456666666666666655
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1e-23 Score=202.67 Aligned_cols=258 Identities=13% Similarity=0.022 Sum_probs=193.5
Q ss_pred eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCC
Q 037732 68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL 147 (350)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~ 147 (350)
.+.+..+..++.+..+++|++|++ +.+.. ..+|. + .+++|+.|++++|..... ..+..+++|++|++++|.++
T Consensus 291 ~l~~~~~~~l~~l~~~~~L~~L~l--~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIKYLEDVPKHFKWQSLSI--IRCQL-KQFPT--L-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCCCCCCCCTTCCCSEEEE--ESCCC-SSCCC--C-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEE
T ss_pred EecCccchhhhhccccccCCEEEc--ccccC-ccccc--C-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccC
Confidence 344455566666667777888888 44443 66663 3 678888888887743321 14567888888888888766
Q ss_pred C----chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhh
Q 037732 148 D----ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEV 223 (350)
Q Consensus 148 ~----~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 223 (350)
. +..+..+++|++|++++|.+..+|..+..+++|+.|++++|......+...+.++++|++|++++|.+
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------- 436 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT------- 436 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC-------
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC-------
Confidence 4 46778888899999988888888888888899999999886554444423378888999999998887
Q ss_pred ccccccchhhcCCCceeEEEecCCCC--CCccc-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccc-hHH
Q 037732 224 EGVKNASLHELKHLISLELQIQDVNT--FPRGL-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRL-KDG 295 (350)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~-~~~ 295 (350)
.+..+..++++++|+.|++++|.+.. +|..+ .+++|++|++..+.+ +..++.+++|+.|++++|..... |.+
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 55667788889999999999998765 56666 678999999876654 33577889999999999877765 444
Q ss_pred HHHHhcccceeeeccccccchhhhhhhhcccCcC-cceEEEEeCccceecc
Q 037732 296 LILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPS-QLKHLYIRGSHLTLNP 345 (350)
Q Consensus 296 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~-~L~~L~l~~~~~~~~p 345 (350)
+. .+++|+.|+|++|+++. +|..+ ..++ +|+.|++++|++.+..
T Consensus 517 ~~-~l~~L~~L~l~~N~l~~---~p~~~--~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 517 YN-QLYSLSTLDCSFNRIET---SKGIL--QHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TT-TCTTCCEEECTTSCCCC---EESCG--GGSCTTCCEEECCSCCCCCSS
T ss_pred cc-CCCcCCEEECCCCcCcc---cCHhH--hhhcccCcEEEccCCCcccCC
Confidence 44 46899999999999887 66666 6676 5999999999988743
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.3e-22 Score=195.01 Aligned_cols=119 Identities=23% Similarity=0.228 Sum_probs=64.6
Q ss_pred eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCC
Q 037732 68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 144 (350)
.+..+.+..++ .+.++++|++|++ +.+. ...++...|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 38 ~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 38 DLSFNPLKILKSYSFSNFSELQWLDL--SRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEC--TTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred ECCCCCcCEeChhhccCCccCcEEeC--CCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 33344444443 2445566666666 3332 2333322244566666666666665543 555666666666666666
Q ss_pred CCCC--chhhhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCC
Q 037732 145 KLLD--ITVIRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDC 189 (350)
Q Consensus 145 ~l~~--~~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~ 189 (350)
.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 6555 245566666666666666555 35555666666666666653
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=5.1e-23 Score=184.63 Aligned_cols=251 Identities=17% Similarity=0.171 Sum_probs=189.1
Q ss_pred CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732 82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL 158 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L 158 (350)
.|+.....++ .+.....+|..+ .+++++|++++|.++.+|. .+.++++|++|++++|.+.. +..+..+++|
T Consensus 29 ~C~~~~~c~~---~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 29 SCDRNGICKG---SSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECTTSEEEC---CSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCeEeeC---CCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 3444445566 455567788754 3589999999999987665 78899999999999999888 4678999999
Q ss_pred cEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCC-CCcchhhhccccccchhhcC
Q 037732 159 AVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRS-FDKWEVEVEGVKNASLHELK 235 (350)
Q Consensus 159 ~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~ 235 (350)
++|++++|.+..+|.. +..+++|++|++++| .+..+|. ..+.++++|++|++++|. + ....+..+++++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~ 174 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLT 174 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCC
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCC
Confidence 9999999999988876 788999999999984 4556666 447889999999999884 4 233456788899
Q ss_pred CCceeEEEecCCCCC-Cccc-ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCcccchHH---HHHHhccccee
Q 037732 236 HLISLELQIQDVNTF-PRGL-FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDG---LILKLEGIEDL 306 (350)
Q Consensus 236 ~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L 306 (350)
+|+.|++++|.+..+ |..+ .+++|++|++..+.+.. ++..+++|+.|++++|.....+.. .....+.++.+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence 999999999998765 4555 67788888887766433 234578888888888765543311 12234567777
Q ss_pred eeccccccc--hhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732 307 WLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES 348 (350)
Q Consensus 307 ~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~ 348 (350)
+++++.+.+ ...+|..+ ..+++|+.|++++|.++.+|+.+
T Consensus 255 ~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp EEESCBCCHHHHHHHHHHH--HTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccccccccCcchhhhHHHH--hcccCCCEEECCCCCCCccCHHH
Confidence 777777654 22356667 78999999999999999999864
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.5e-22 Score=188.30 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=62.2
Q ss_pred hhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeee
Q 037732 231 LHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWL 308 (350)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L 308 (350)
+..+++|+.|++++|.+..++....+++|+.|++..+.+.. .++.+++|+.|++++|.....+ .+. .+++|+.|++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~-~l~~L~~L~l 360 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLA-NLTNINWLSA 360 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGT-TCTTCCEEEC
T ss_pred ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhc-cCCCCCEEeC
Confidence 33444444444444444444331144555555554443322 1445666666666665555443 222 3577777777
Q ss_pred ccccccchhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732 309 SYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES 348 (350)
Q Consensus 309 ~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~ 348 (350)
++|.++++ .| + ..+++|+.|++++|+++..|...
T Consensus 361 ~~n~l~~~--~~--~--~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 361 GHNQISDL--TP--L--ANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CSSCCCBC--GG--G--TTCTTCCEEECCCEEEECCCBCC
T ss_pred CCCccCcc--ch--h--hcCCCCCEEeccCCcccCCchhh
Confidence 77777663 23 4 56788888888888888776543
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.7e-23 Score=198.72 Aligned_cols=273 Identities=16% Similarity=0.201 Sum_probs=166.9
Q ss_pred eeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEec
Q 037732 66 VFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLY 142 (350)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~ 142 (350)
.+.+..+.+..++ .+..+++|++|++ +.+. ...++...+..+++|++|++++|.+..++.. ++.+++|++|+++
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLIL--KSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEEC--TTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred EEECcCCccCccChhhhhcCCcccEEEC--CCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 3445555555553 4567788888888 4443 3344433355778888888888887766554 7788888888888
Q ss_pred CCCCCC---chhhhccCCCcEEEecCCC-Ccccc-ccccCCCCccEEeccCCCCCCccCcchhC----------------
Q 037732 143 NCKLLD---ITVIRDLKKLAVLCLRGSD-IKRLP-VEVGELTLLRLLDLRDCMELEVIPPNILS---------------- 201 (350)
Q Consensus 143 ~~~l~~---~~~l~~l~~L~~L~l~~~~-~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~---------------- 201 (350)
+|.+.. +..++.+++|++|++++|. +..+| ..+.++++|++|++++|......|.. ++
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBST
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCccc
Confidence 887764 4567777888888887775 55665 35777777777777775443333333 33
Q ss_pred --------CCCCCcEEEcCCCCCCcchh---hhcc---------------------ccccc-------------------
Q 037732 202 --------NLSHLEELYMGPRSFDKWEV---EVEG---------------------VKNAS------------------- 230 (350)
Q Consensus 202 --------~l~~L~~L~l~~~~~~~~~~---~~~~---------------------~~~~~------------------- 230 (350)
.+++|++|++++|.+...+. .... .++..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 45667777777666543210 0000 00000
Q ss_pred ----------------------------------------hhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC
Q 037732 231 ----------------------------------------LHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG 268 (350)
Q Consensus 231 ----------------------------------------l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~ 268 (350)
.....+|+.|++++|.+..+|..+ .+++|++|++..+.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 111234556666666666666555 36777777776555
Q ss_pred ccc-------ccccCccceEEEEeCCCcccchH--HHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCc
Q 037732 269 VWG-------WEYADIWCREFKIDLDSKIRLKD--GLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGS 339 (350)
Q Consensus 269 ~~~-------~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~ 339 (350)
+.. .++.+++|+.|++++|....++. .....+++|+.|++++|.++. +|..+ ..+++|+.|++++|
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~--~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP---MPDSC--QWPEKMRFLNLSST 420 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC---CCSCC--CCCTTCCEEECTTS
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc---CChhh--cccccccEEECCCC
Confidence 432 24566777777777776666553 223345777777777777765 55555 55677777777777
Q ss_pred cceeccCC
Q 037732 340 HLTLNPAE 347 (350)
Q Consensus 340 ~~~~~p~~ 347 (350)
.++.+|..
T Consensus 421 ~l~~l~~~ 428 (549)
T 2z81_A 421 GIRVVKTC 428 (549)
T ss_dssp CCSCCCTT
T ss_pred Ccccccch
Confidence 77666654
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=7.6e-23 Score=181.80 Aligned_cols=257 Identities=13% Similarity=0.166 Sum_probs=188.3
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 145 (350)
+...+..+..+|... .++++.|++ +.+ ....++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 36 l~~~~~~l~~lp~~~-~~~l~~L~L--~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 36 VQCSDLGLEKVPKDL-PPDTALLDL--QNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EECTTSCCCSCCCSC-CTTCCEEEC--CSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCccccCccC-CCCCeEEEC--CCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 334455666666422 368899999 444 45556654567899999999999998875 7788999999999999998
Q ss_pred CCC-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCC--ccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732 146 LLD-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELE--VIPPNILSNLSHLEELYMGPRSFDKWEV 221 (350)
Q Consensus 146 l~~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 221 (350)
+.. +..+. ++|++|++++|.+..++. .+.++++|++|++++|.... ..+.. +.++++|++|++++|.+...
T Consensus 112 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l-- 186 (330)
T 1xku_A 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI-- 186 (330)
T ss_dssp CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC--
T ss_pred CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC--
Confidence 887 54443 789999999998887765 47889999999998854422 33333 78889999999998887433
Q ss_pred hhccccccchhhcCCCceeEEEecCCCCCC-ccc-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcccchHH
Q 037732 222 EVEGVKNASLHELKHLISLELQIQDVNTFP-RGL-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKIRLKDG 295 (350)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~ 295 (350)
|..+. ++|+.|++++|.+..++ ..+ .+++|++|++..+.+. ..+..+++|+.|++++|....+|.+
T Consensus 187 ------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 187 ------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp ------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred ------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 22222 68889999988887664 444 6788888888766542 2567888999999999888888877
Q ss_pred HHHHhcccceeeeccccccchhhhhhhhcc----cCcCcceEEEEeCcccee
Q 037732 296 LILKLEGIEDLWLSYLEEQDVNYFVNELVK----VGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 296 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~----~~~~~L~~L~l~~~~~~~ 343 (350)
+.. +++|+.|++++|.++.+ -+..+.. ...+.|+.|++.+|++..
T Consensus 259 l~~-l~~L~~L~l~~N~i~~~--~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 259 LAD-HKYIQVVYLHNNNISAI--GSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTT-CSSCCEEECCSSCCCCC--CTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred hcc-CCCcCEEECCCCcCCcc--ChhhcCCcccccccccccceEeecCcccc
Confidence 654 58899999999988873 1122211 134788899999998864
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=194.19 Aligned_cols=267 Identities=17% Similarity=0.116 Sum_probs=148.8
Q ss_pred eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCC
Q 037732 68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~ 144 (350)
.++.+.+..++ .+.++++|++|++ +.+. ...++...|.++++|++|++++|.+..++ ..|..+++|++|++++|
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDL--SRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEEC--TTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EccCCccCccChhHhhCCCCceEEEC--CCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 34444454444 3456667777777 3332 34444444556677777777777666543 45666777777777777
Q ss_pred CCCC-c-hhhhccCCCcEEEecCCCCcc--ccccccCCCCccEEeccCCCCCCccCcchhCCCCCC----cEEEcCCCCC
Q 037732 145 KLLD-I-TVIRDLKKLAVLCLRGSDIKR--LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHL----EELYMGPRSF 216 (350)
Q Consensus 145 ~l~~-~-~~l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~ 216 (350)
.+.. + ..++.+++|++|++++|.+.. +|..++++++|++|++++|. +..++...++.+++| +.|++++|.+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence 6666 2 246667777777777776653 56666777777777776633 233322223333333 4444444433
Q ss_pred Ccchh--------------------------------------------------------------------------h
Q 037732 217 DKWEV--------------------------------------------------------------------------E 222 (350)
Q Consensus 217 ~~~~~--------------------------------------------------------------------------~ 222 (350)
...+. .
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 22110 0
Q ss_pred hccccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCcccc-----------------------cccCcc
Q 037732 223 VEGVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVWGW-----------------------EYADIW 278 (350)
Q Consensus 223 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~-----------------------~~~~~~ 278 (350)
..+..+..+..+++|+.|++++|.+..+|..+ .+ +|++|++..+.+... ...+++
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred hhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence 01223445666778888888888777777665 34 666666644332110 135566
Q ss_pred ceEEEEeCCCcccc---hHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732 279 CREFKIDLDSKIRL---KDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 279 L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
|+.|+++++..... +..+. .+++|+.|++++|.+++ ++..+ ..+++|+.|++++|.++..+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~---~~~~~--~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT---MSSNF--LGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEE---EEEEE--ETCTTCCEEECTTSEEESCT
T ss_pred CCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccc---ccccc--cccCCCCEEEccCCcccccc
Confidence 77777776655443 33443 35777777777776665 33333 45556666666665555543
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.6e-22 Score=192.53 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=99.0
Q ss_pred ceeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecC
Q 037732 65 NVFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYN 143 (350)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~ 143 (350)
..+..++..+..+|... .+++++|++ +.+. ...++...+..+++|++|++++|.++.+ |..|..+++|++|++++
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~L--s~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSL--SQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEEC--CSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEEC--CCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 45666777888888633 389999999 4444 5566655567999999999999999975 67899999999999999
Q ss_pred CCCCC-chhhhccCCCcEEEecCCCCcccc--ccccCCCCccEEeccCCC
Q 037732 144 CKLLD-ITVIRDLKKLAVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCM 190 (350)
Q Consensus 144 ~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~ 190 (350)
|.++. +.. .+++|++|++++|.+..+| ..++++++|++|++++|.
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 99988 544 8999999999999998764 689999999999998854
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.8e-22 Score=179.56 Aligned_cols=257 Identities=14% Similarity=0.151 Sum_probs=199.8
Q ss_pred ceeeeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec
Q 037732 65 NVFSATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY 142 (350)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 142 (350)
..+.+.++.+..++ .+..+++|++|++ +.+. ...++...+..+++|++|++++|.+..+|..+. ++|++|+++
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVL--VNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEEC--CCCc-cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 34556666777775 4778999999999 5554 445544446789999999999999998888765 899999999
Q ss_pred CCCCCC-c-hhhhccCCCcEEEecCCCCc---cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732 143 NCKLLD-I-TVIRDLKKLAVLCLRGSDIK---RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD 217 (350)
Q Consensus 143 ~~~l~~-~-~~l~~l~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (350)
+|.+.. + ..+..+++|++|++++|.+. ..|..+..+ +|+.|++++ +.+..+|.. +. ++|++|++++|.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~~--~~L~~L~l~~n~i- 205 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-LP--ETLNELHLDHNKI- 205 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-SC--SSCSCCBCCSSCC-
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-cc--CCCCEEECCCCcC-
Confidence 999988 3 56899999999999999886 345566777 999999999 456667775 22 7899999999988
Q ss_pred cchhhhccccccchhhcCCCceeEEEecCCCCCCcc-c-ccCCccEEEEEEcCc---ccccccCccceEEEEeCCCcccc
Q 037732 218 KWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG-L-FLEKLETFKILIGGV---WGWEYADIWCREFKIDLDSKIRL 292 (350)
Q Consensus 218 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~ 292 (350)
.+..+..+..+++|+.|++++|.+..++.. + .+++|++|++..+.+ +..+..+++|+.|++++|....+
T Consensus 206 ------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 206 ------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp ------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred ------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 444557789999999999999999888764 4 689999999976654 44578899999999999887776
Q ss_pred hHHHHHH------hcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcc
Q 037732 293 KDGLILK------LEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH 340 (350)
Q Consensus 293 ~~~~~~~------~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~ 340 (350)
+...+.. .++|+.|++++|.+..+...+..+ ..+++|+.+++++|+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~--~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF--RCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG--TTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccc--cccchhhhhhccccc
Confidence 5432211 367999999999988543345556 779999999999885
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.5e-22 Score=174.72 Aligned_cols=214 Identities=17% Similarity=0.161 Sum_probs=148.8
Q ss_pred cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCCcEEEe
Q 037732 87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCL 163 (350)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l 163 (350)
+++++ .+.....+|.. -.++++.|+++++.+..++ ..|..+++|++|++++|.+.. +..+..+++|++|++
T Consensus 14 ~~~~c---~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSC---PQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEEC---CSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEc---CcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 56667 44456667754 3578999999999988755 468889999999999998877 567888999999999
Q ss_pred cCCC-Cccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732 164 RGSD-IKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE 241 (350)
Q Consensus 164 ~~~~-~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 241 (350)
++|. +..+ |..+..+++|++|++++|. +..+++..+.++++|++|++++|.+. +..+..++.+++|+.|+
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ-------ALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCccc-------ccCHhHhccCCCccEEE
Confidence 9986 7777 5578889999999999854 44454444788999999999988873 33345678889999999
Q ss_pred EEecCCCCCCcc-c-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccccc
Q 037732 242 LQIQDVNTFPRG-L-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQ 314 (350)
Q Consensus 242 l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 314 (350)
+++|.+..++.. + .+++|++|++..+.+ +..+..+++|+.|++++|....++......+++|+.|++++|.+.
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 999988877665 2 455666666544432 223444555555555555444444333333455555555555443
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=202.45 Aligned_cols=272 Identities=18% Similarity=0.164 Sum_probs=148.1
Q ss_pred eeccccccccc--ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC-CCccccCcccccEEEecCC
Q 037732 68 SATEEQTNLLL--EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 68 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~ 144 (350)
.++.+.+..++ .+.++++|++|++ +.+.....++...+.++++|++|++++|.+.. .|..|..+++|++|++++|
T Consensus 30 dLs~N~i~~i~~~~~~~l~~L~~LdL--s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 30 LLSFNYIRTVTASSFPFLEQLQLLEL--GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEESCCCCEECSSSCSSCCSCSEEEE--CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred ECCCCcCCccChhHCcccccCeEEeC--CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 33444444442 3456666666666 44444455533334566666667776666664 3556666666677776666
Q ss_pred CCCC--chh--hhccCCCcEEEecCCCCcccc--ccccCCCCccEEeccCCCCCCccCcchhCCC--CC-----------
Q 037732 145 KLLD--ITV--IRDLKKLAVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPPNILSNL--SH----------- 205 (350)
Q Consensus 145 ~l~~--~~~--l~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~----------- 205 (350)
.+.+ +.. ++++++|++|++++|.+..++ ..++++++|++|++++|......+.. +..+ ++
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBS
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCcc
Confidence 6654 332 666666666666666665432 34666666666666664332222221 2211 22
Q ss_pred -------------------CcEEEcCCCCCCcchh-hhcc----------------------------ccccchhh--cC
Q 037732 206 -------------------LEELYMGPRSFDKWEV-EVEG----------------------------VKNASLHE--LK 235 (350)
Q Consensus 206 -------------------L~~L~l~~~~~~~~~~-~~~~----------------------------~~~~~l~~--l~ 235 (350)
|++|++++|.+..... .... .....+.+ .+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 4444444443211000 0000 00001111 14
Q ss_pred CCceeEEEecCCCCCCcc-c-ccCCccEEEEEEcCcc----cccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732 236 HLISLELQIQDVNTFPRG-L-FLEKLETFKILIGGVW----GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS 309 (350)
Q Consensus 236 ~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 309 (350)
+|+.|+++.|.+..++.. + .+++|+.|++..+.+. ..+..+++|+.|++++|....++......+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 566666666666544333 2 4677777777655532 245667777777777766655432222235777777777
Q ss_pred cccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
+|.++.+ .+..+ ..+++|+.|++++|.++.+|.
T Consensus 347 ~N~i~~~--~~~~~--~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 347 KNHIAII--QDQTF--KFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp SCCCCCC--CSSCS--CSCCCCCEEEEETCCSCCCSS
T ss_pred CCCCCcc--Chhhh--cCCCCCCEEECCCCCCCcccC
Confidence 7777663 22334 567888888888888777654
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=191.67 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=117.6
Q ss_pred cccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC
Q 037732 70 TEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD 148 (350)
Q Consensus 70 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~ 148 (350)
...++..+|.. -.+++++|++ +.+. ...++...|.++++|++|++++|.+..+ |..|.++++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~L--s~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 15 MELNFYKIPDN-LPFSTKNLDL--SFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CSSCCSSCCSS-SCSSCCEEEC--CSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCccccCCC-ccccccEEEc--cCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence 34466777752 2368999999 4444 4555544467899999999999999875 4578999999999999999988
Q ss_pred --chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCC-ccCcchhCCCCCCcEEEcCCCCCCc
Q 037732 149 --ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMGPRSFDK 218 (350)
Q Consensus 149 --~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (350)
+..++.+++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 4789999999999999999998876 68999999999999965443 46776 7999999999999998843
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.3e-22 Score=178.35 Aligned_cols=201 Identities=18% Similarity=0.132 Sum_probs=170.5
Q ss_pred CcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEE
Q 037732 132 LLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELY 210 (350)
Q Consensus 132 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 210 (350)
....++.|++++|.+.. ++.++++++|++|++++|.+..+|..++++++|++|++++|. +..+|.. ++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEE
Confidence 35789999999999988 788999999999999999999999999999999999999954 5588887 89999999999
Q ss_pred cCCCCCCcchhhhccccccch---------hhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc---ccccccCc
Q 037732 211 MGPRSFDKWEVEVEGVKNASL---------HELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV---WGWEYADI 277 (350)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~ 277 (350)
+++|.. .+.+|..+ +++++|+.|++++|.+..+|..+ .+++|++|++..+.+ +..+..++
T Consensus 157 L~~n~~-------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 157 IRACPE-------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp EEEETT-------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred CCCCCC-------ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 999876 44555554 45999999999999999999988 789999999987664 44577899
Q ss_pred cceEEEEeCC-CcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee-ccC
Q 037732 278 WCREFKIDLD-SKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL-NPA 346 (350)
Q Consensus 278 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~-~p~ 346 (350)
+|+.|++++| ....+|..+.. +++|+.|+|++|.+.+. +|..+ ..+++|+.|+|++|++.+ +|+
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~--~p~~~--~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLT--LPLDI--HRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCB--CCTTG--GGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhh--cchhh--hcCCCCCEEeCCCCCchhhccH
Confidence 9999999995 44556655554 69999999999888774 78778 789999999999988665 443
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=3.2e-22 Score=174.32 Aligned_cols=202 Identities=19% Similarity=0.200 Sum_probs=143.6
Q ss_pred cCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCCchhhhccCCC
Q 037732 80 VVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKL 158 (350)
Q Consensus 80 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L 158 (350)
+.++++++.+++ .+.....+|..+ .++++.|++++|.+..+ +..+..+++|++|++++|.++..+..+.+++|
T Consensus 6 ~~~l~~l~~l~~---~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNC---DKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79 (290)
T ss_dssp EECSTTCCEEEC---TTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTC
T ss_pred ccccCCccEEEC---CCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcC
Confidence 445677788888 344455666543 35778888888887754 45677888888888888887773334677888
Q ss_pred cEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCc
Q 037732 159 AVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLI 238 (350)
Q Consensus 159 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 238 (350)
++|++++|.+..+|..+..+++|++|++++ +.+..+++..+.++++|++|++++|.+. +..+..+..+++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELK-------TLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCC-------CCCTTTTTTCTTCC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCC-------ccChhhcccccCCC
Confidence 888888888888887777788888888887 4455566544777888888888887773 23334567777888
Q ss_pred eeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccccc
Q 037732 239 SLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQ 314 (350)
Q Consensus 239 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 314 (350)
.|++++|.+..+|... +..+++|+.|++++|....+|.+++.. ++|+.|+|++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~------------------~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGL------------------LNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTT------------------TTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHH------------------hcCcCCCCEEECCCCcCCccChhhccc-ccCCeEEeCCCCcc
Confidence 8888888777776652 345667777888887777777766653 67888888887654
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=7.9e-22 Score=171.55 Aligned_cols=259 Identities=16% Similarity=0.158 Sum_probs=195.3
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 145 (350)
+......+..+|. .-.+++++|++ +. +....++...+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l--~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFL--HG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEEC--TT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCcCCcccCCc-CCCCCceEEEe--eC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3445556777764 23579999999 44 445566655567899999999999999875 7789999999999999997
Q ss_pred -CCC--chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732 146 -LLD--ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV 221 (350)
Q Consensus 146 -l~~--~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 221 (350)
+.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc----
Confidence 776 57889999999999999999877 456889999999999994 455666655789999999999999883
Q ss_pred hhccccccchhhcCCCceeEEEecCCCCC-Cccc-ccCCccEEEEEEcCccc----ccccCccceEEEEeCCCcccchHH
Q 037732 222 EVEGVKNASLHELKHLISLELQIQDVNTF-PRGL-FLEKLETFKILIGGVWG----WEYADIWCREFKIDLDSKIRLKDG 295 (350)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~ 295 (350)
+..+..+..+++|+.|++++|.+..+ |..+ .+++|+.|++..+.+.. .+..+++|+.|++++|........
T Consensus 167 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 167 ---SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ---ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 33345688899999999999998876 5555 68999999998766433 467899999999999755432221
Q ss_pred HHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcc
Q 037732 296 LILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH 340 (350)
Q Consensus 296 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~ 340 (350)
.. ....++.+....+.+... .|..+....+..++..++.+|.
T Consensus 244 ~~-~~~~l~~~~~~~~~~~c~--~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 244 RP-LWAWLQKFRGSSSEVPCS--LPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HH-HHHHHHHCCSEECCCBEE--ESGGGTTCBGGGSCGGGSCCC-
T ss_pred HH-HHHHHHhcccccCccccC--CchHhCCcChhhcCHHHhccCC
Confidence 11 123455566676666652 5666644556777776676663
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=197.47 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=190.9
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCc-CC-CccccCcccccEEEecCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLL-SL-PSSLGLLSNLQNLSLYNC 144 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~l~~l~~L~~L~l~~~ 144 (350)
......++..+|. ..+++++|++ +.+......+.. +.++++|++|++++|... .+ |..|.++++|++|++++|
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdL--s~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLL--SFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEE--ESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCCCCCC--CCCCcCEEEC--CCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3445567888887 5689999999 555544433444 578999999999999544 45 778999999999999999
Q ss_pred CCCC--chhhhccCCCcEEEecCCCCcc-cccc--ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcc
Q 037732 145 KLLD--ITVIRDLKKLAVLCLRGSDIKR-LPVE--VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKW 219 (350)
Q Consensus 145 ~l~~--~~~l~~l~~L~~L~l~~~~~~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 219 (350)
.+.. +..++.+++|++|++++|.+.. +|.. +.++++|++|++++|......+...++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~- 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL- 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-
Confidence 9987 6889999999999999998884 5554 89999999999999665544443348999999999999998743
Q ss_pred hhhhccccccchhhc--CC------------------------------CceeEEEecCCC-CCCccc------------
Q 037732 220 EVEVEGVKNASLHEL--KH------------------------------LISLELQIQDVN-TFPRGL------------ 254 (350)
Q Consensus 220 ~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~~-~l~~~~------------ 254 (350)
..+..+..+ ++ |+.|++++|.+. ..+..+
T Consensus 163 ------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 163 ------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp ------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred ------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 223333333 33 555555555332 111110
Q ss_pred ---------------------------ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhccc
Q 037732 255 ---------------------------FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGI 303 (350)
Q Consensus 255 ---------------------------~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 303 (350)
..++|+.|++..+.+ +..++.+++|+.|++++|.....+...+..+++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 014566666644432 2346778888888888877766544333446889
Q ss_pred ceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 304 EDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 304 ~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
+.|+|++|.+++. .+..+ ..+++|+.|++++|.++.+|+.
T Consensus 317 ~~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 317 QVLNLSYNLLGEL--YSSNF--YGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CEEEEESCCCSCC--CSCSC--SSCTTCCEEECCSCCCCCCCSS
T ss_pred CEEECCCCCCCcc--CHHHh--cCCCCCCEEECCCCCCCccChh
Confidence 9999998888774 45566 6788999999999988887764
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.4e-21 Score=180.97 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=95.4
Q ss_pred ecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC
Q 037732 69 ATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD 148 (350)
Q Consensus 69 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~ 148 (350)
+....+..+|.+..+++|++|++ +.+. ...++ +..+++|++|++++|.++.++ ++.+++|++|++++|.++.
T Consensus 49 Ls~n~l~~~~~l~~l~~L~~L~L--s~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 49 CHNSSITDMTGIEKLTGLTKLIC--TSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp CCSSCCCCCTTGGGCTTCSEEEC--CSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC
T ss_pred ccCCCcccChhhcccCCCCEEEc--cCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe
Confidence 33344444444445555555555 2222 22232 234555555555555555443 4455555555555555544
Q ss_pred chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccc
Q 037732 149 ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKN 228 (350)
Q Consensus 149 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 228 (350)
.+ ++.+++|++|++++|.++.++ ++.+++|+.|++++|..++.++ ++.+++|++|++++|.+.. ++
T Consensus 121 l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--------l~ 186 (457)
T 3bz5_A 121 LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--------LD 186 (457)
T ss_dssp CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--------CC
T ss_pred ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--------ec
Confidence 22 445555555555555555442 4455555555555544444331 3455555555555555421 11
Q ss_pred cchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCccc-ccccCccceEEEEeCCCcccch
Q 037732 229 ASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGVWG-WEYADIWCREFKIDLDSKIRLK 293 (350)
Q Consensus 229 ~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 293 (350)
++.+++|+.|++++|.+..++ + .+++|++|++..+.+.. -++.+++|+.|++++|.....|
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC
Confidence 444555555555555555442 2 34555555554333221 1344555555555555444443
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=4.9e-24 Score=187.94 Aligned_cols=217 Identities=16% Similarity=0.113 Sum_probs=122.1
Q ss_pred ceEEeecCCcCcC--CCcccc-------CcccccEEEecCCCCCC--chhh--hccCCCcEEEecCCCCccccccccCC-
Q 037732 113 VRVINFSYMNLLS--LPSSLG-------LLSNLQNLSLYNCKLLD--ITVI--RDLKKLAVLCLRGSDIKRLPVEVGEL- 178 (350)
Q Consensus 113 L~~L~l~~~~~~~--lp~~l~-------~l~~L~~L~l~~~~l~~--~~~l--~~l~~L~~L~l~~~~~~~lp~~l~~l- 178 (350)
++.|+++++.+.. +|..+. .+++|++|++++|.+++ +..+ ..+++|++|++++|.+..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 5555555555432 343333 45555555555555543 3333 45555555555555555444444443
Q ss_pred ----CCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccch--hhcCCCceeEEEecCCCCCC-
Q 037732 179 ----TLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL--HELKHLISLELQIQDVNTFP- 251 (350)
Q Consensus 179 ----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~l~- 251 (350)
++|++|++++|. +..++...++++++|++|++++|.+.... ..+..+ +.+++|+.|++++|.+..++
T Consensus 145 ~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER-----GLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp TTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH-----HHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred HhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch-----HHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 555555555532 23333222455555555555555442110 011112 44555555555555554222
Q ss_pred --ccc--ccCCccEEEEEEcCcc-----cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732 252 --RGL--FLEKLETFKILIGGVW-----GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE 322 (350)
Q Consensus 252 --~~~--~~~~L~~L~l~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 322 (350)
..+ .+++|++|++..+.+. ..+..+++|+.|++++|....+|..+. ++|+.|++++|++++ +|.
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~---~p~- 291 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDR---NPS- 291 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCS---CCC-
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCC---Chh-
Confidence 111 2345555555433322 123456889999999988888887654 799999999999998 444
Q ss_pred hcccCcCcceEEEEeCccceec
Q 037732 323 LVKVGPSQLKHLYIRGSHLTLN 344 (350)
Q Consensus 323 l~~~~~~~L~~L~l~~~~~~~~ 344 (350)
+ ..+++|+.|++++|+++..
T Consensus 292 ~--~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 292 P--DELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp T--TTSCEEEEEECTTCTTTCC
T ss_pred H--hhCCCCCEEeccCCCCCCC
Confidence 5 7899999999999998763
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=2.4e-21 Score=184.82 Aligned_cols=240 Identities=19% Similarity=0.179 Sum_probs=168.4
Q ss_pred eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732 66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 145 (350)
.+..++..+..+|.... ++|+.|++ +.+ ....+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 44 ~L~ls~n~L~~lp~~l~-~~L~~L~L--~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP-AHITTLVI--PDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp EEECCSSCCSCCCSCCC-TTCSEEEE--CSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred EEEecCCCcCccChhhC-CCCcEEEe--cCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 45566667777775333 68888888 333 4456665 46788888888888877776 56788888888888
Q ss_pred CCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhC-----------------CCCCCcE
Q 037732 146 LLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILS-----------------NLSHLEE 208 (350)
Q Consensus 146 l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----------------~l~~L~~ 208 (350)
++.++. .+.+|+.|++++|++..+|.. +++|++|++++| .+..+|.. +. .+++|+.
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~ 185 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQE 185 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcE
Confidence 777322 567777777777777777753 367777777774 33334331 11 1255666
Q ss_pred EEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCC
Q 037732 209 LYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDS 288 (350)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~ 288 (350)
|++++|.+.. +|. .+++|+.|++++|.+..+|.. +++|+.|++..+.+..+-..+++|+.|++++|.
T Consensus 186 L~Ls~N~l~~--------l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 186 LSVSDNQLAS--------LPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNR 252 (622)
T ss_dssp EECCSSCCSC--------CCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred EECCCCCCCC--------CCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCC
Confidence 6666655532 222 135677777777777777665 578888888777665544667889999999988
Q ss_pred cccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732 289 KIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 289 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
...+|. .+++|+.|+|++|.++. +|..+ ..+++|+.|+|++|++++.+
T Consensus 253 L~~lp~----~~~~L~~L~Ls~N~L~~---lp~~l--~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 253 LTSLPM----LPSGLLSLSVYRNQLTR---LPESL--IHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CSCCCC----CCTTCCEEECCSSCCCS---CCGGG--GGSCTTCEEECCSCCCCHHH
T ss_pred CCcCCc----ccccCcEEeCCCCCCCc---CCHHH--hhccccCEEEecCCCCCCcC
Confidence 888875 46899999999999986 77777 78999999999999988654
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=8.1e-23 Score=180.54 Aligned_cols=234 Identities=14% Similarity=0.063 Sum_probs=112.5
Q ss_pred CCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEE
Q 037732 83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLC 162 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~ 162 (350)
+++|++|++ +.+ ....++...+..+++|+.|++++|.+...+. +..+++|++|++++|.++..+ ..++|++|+
T Consensus 33 ~~~L~~L~L--~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDL--SGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (317)
T ss_dssp GGGCSEEEC--TTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred CCCCCEEEC--cCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence 445666666 332 2333443334556666666666666554433 556666666666666554411 225566666
Q ss_pred ecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccch-hhcCCCceeE
Q 037732 163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASL-HELKHLISLE 241 (350)
Q Consensus 163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~ 241 (350)
+++|.+..++.. .+++|++|++++|. +..++...++.+++|++|++++|.+. +..+..+ ..+++|+.|+
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSDTLEHLN 175 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-------EEEGGGGGGGTTTCCEEE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-------cccHHHHhhccCcCCEEE
Confidence 666665544432 24556666666533 33333322455566666666666552 2222223 3455666666
Q ss_pred EEecCCCCCCcccccCCccEEEEEEcCcc---cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhh
Q 037732 242 LQIQDVNTFPRGLFLEKLETFKILIGGVW---GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNY 318 (350)
Q Consensus 242 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 318 (350)
+++|.+..++....+++|++|++..+.+. ..+..+++|+.|++++|....+|..+.. +++|+.|++++|.++.. .
T Consensus 176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-l~~L~~L~l~~N~~~~~-~ 253 (317)
T 3o53_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-SQNLEHFDLRGNGFHCG-T 253 (317)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-CTTCCEEECTTCCCBHH-H
T ss_pred CCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhc-CCCCCEEEccCCCccCc-C
Confidence 66666555543334444555554433321 1233444444444444444444433222 34444444444444410 1
Q ss_pred hhhhhcccCcCcceEEEEe
Q 037732 319 FVNELVKVGPSQLKHLYIR 337 (350)
Q Consensus 319 ~~~~l~~~~~~~L~~L~l~ 337 (350)
++..+ ..+++|+.|++.
T Consensus 254 ~~~~~--~~~~~L~~l~l~ 270 (317)
T 3o53_A 254 LRDFF--SKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHH--HTCHHHHHHHHH
T ss_pred HHHHH--hccccceEEECC
Confidence 33333 344444444444
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=9.8e-22 Score=191.31 Aligned_cols=254 Identities=15% Similarity=0.113 Sum_probs=122.0
Q ss_pred ccCCCCCccEEEecccCCccc--------cccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCC---
Q 037732 79 EVVECPQLELLFICADKESSS--------LTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKL--- 146 (350)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l--- 146 (350)
.+..+++|+.|++ ..+... ..+....+..+++|+.|++++|.+..+ +..|..+++|++|++++|.+
T Consensus 291 ~~~~l~~L~~L~L--~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 291 SLHGLFNVRYLNL--KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTCTTCCEEEC--TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhcCCCCccEEec--cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 3456677777777 322111 112222244566777777777766653 33456666666666665542
Q ss_pred -------------------------CC--chhhhccCCCcEEEecCCCCc-ccc-ccccCCCCccEEeccCCCCCCccCc
Q 037732 147 -------------------------LD--ITVIRDLKKLAVLCLRGSDIK-RLP-VEVGELTLLRLLDLRDCMELEVIPP 197 (350)
Q Consensus 147 -------------------------~~--~~~l~~l~~L~~L~l~~~~~~-~lp-~~l~~l~~L~~L~l~~~~~~~~~~~ 197 (350)
.. +..+..+++|++|++++|.+. .+| ..+..+++|+.|++++|.. ..++.
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~ 447 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTR 447 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCT
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeCh
Confidence 22 123333444444444444433 222 2333444444444444221 11111
Q ss_pred chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCccc----
Q 037732 198 NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVWG---- 271 (350)
Q Consensus 198 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~---- 271 (350)
..+..+++|+.|++++|.+.. .+..|..++++++|+.|++++|.+..++... .+++|++|++..+.+..
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~-----~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 522 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKN-----VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBC-----TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred hhhhcCcccccchhccccccc-----cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence 112333333333333333211 1244555666666777777766666655543 45666666665443321
Q ss_pred --------ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhh-hhcccCcCcceEEEEeCccce
Q 037732 272 --------WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVN-ELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 272 --------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~~~~~~L~~L~l~~~~~~ 342 (350)
.+..+++|+.|++++|....+|...+..+++|+.|+|++|.++. +|. .+ ..+++|+.|++++|.++
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~~--~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT---LPASVF--NNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTT--TTCTTCCEEECTTSCCC
T ss_pred hccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc---CCHhHh--CCCCCCCEEECCCCcCC
Confidence 14455566666666655555554333334556666665555554 222 22 34455555555555555
Q ss_pred ecc
Q 037732 343 LNP 345 (350)
Q Consensus 343 ~~p 345 (350)
.+|
T Consensus 598 ~~~ 600 (680)
T 1ziw_A 598 SVE 600 (680)
T ss_dssp BCC
T ss_pred ccC
Confidence 444
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=3.1e-22 Score=175.92 Aligned_cols=224 Identities=15% Similarity=0.070 Sum_probs=177.0
Q ss_pred cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEecCCCCCC----chhhhccCCCcEE
Q 037732 87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLD----ITVIRDLKKLAVL 161 (350)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L 161 (350)
+.+.+ .+.....+|..+ .++++.|++++|.++.+|.. |.++++|++|++++|.+.. +..+..+++|++|
T Consensus 10 ~~l~c---~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRC---NSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEEC---CSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CEEEc---CCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 45666 344566777643 36899999999999988775 6899999999999999875 4677789999999
Q ss_pred EecCCCCccccccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732 162 CLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL 240 (350)
Q Consensus 162 ~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 240 (350)
++++|.+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+ .+..+..+..+++|+.|
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCC-------EECSTTTTTTCTTCCEE
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcC-------CccchhhcccCcCCCEE
Confidence 99999999999889999999999999954 444443 3378899999999999987 55666778889999999
Q ss_pred EEEecCCCC--CCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhh
Q 037732 241 ELQIQDVNT--FPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNY 318 (350)
Q Consensus 241 ~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 318 (350)
++++|.+.. +|. .+..+++|+.|++++|.....+......+++|+.|++++|.++++
T Consensus 156 ~l~~n~l~~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 214 (306)
T 2z66_A 156 KMAGNSFQENFLPD-------------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-- 214 (306)
T ss_dssp ECTTCEEGGGEECS-------------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC--
T ss_pred ECCCCccccccchh-------------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc--
Confidence 999987654 333 345677888888888777666333233469999999999999884
Q ss_pred hhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 319 FVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 319 ~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
.+..+ ..+++|+.|++++|+++..++.
T Consensus 215 ~~~~~--~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 215 DTFPY--KCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CSGGG--TTCTTCCEEECTTSCCCBCSSS
T ss_pred Chhhc--cCcccCCEeECCCCCCcccCHH
Confidence 23345 6799999999999999987653
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=8.4e-22 Score=191.80 Aligned_cols=258 Identities=17% Similarity=0.194 Sum_probs=174.9
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~ 145 (350)
+...+..+..+|... .+++++|++ +. +....++...+.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus 9 ~~cs~~~L~~ip~~~-~~~l~~L~L--s~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL-PTNITVLNL--TH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSSCCSCS-CTTCSEEEC--CS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCcccccccc-CCCCcEEEC--CC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 344455677777532 278999999 44 445566666577899999999999998864 6678899999999999999
Q ss_pred CCC-c-hhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhh
Q 037732 146 LLD-I-TVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVE 222 (350)
Q Consensus 146 l~~-~-~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 222 (350)
+.. + ..++.+++|++|++++|.+..++ ..++++++|++|++++|......+.. ++++++|++|++++|.+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~---- 159 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQA---- 159 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCC----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccc----
Confidence 888 4 36899999999999999998777 46899999999999996554444444 7899999999999988743
Q ss_pred hccccccchh--hcCCCceeEEEecCCCCCCccc--ccCCccEEE---------------------------EEEcCc--
Q 037732 223 VEGVKNASLH--ELKHLISLELQIQDVNTFPRGL--FLEKLETFK---------------------------ILIGGV-- 269 (350)
Q Consensus 223 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~---------------------------l~~~~~-- 269 (350)
..+..+. .+++|+.|++++|.+..++... .+++|+.+. +..+.+
T Consensus 160 ---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 160 ---LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp ---BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ---cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 3333333 4578999999999887655432 344444444 432221
Q ss_pred --ccccccCcc--ceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcc
Q 037732 270 --WGWEYADIW--CREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSH 340 (350)
Q Consensus 270 --~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~ 340 (350)
+.++..++. |+.|++++|.....+......+++|+.|++++|.+++. .+..+ ..+++|+.|++.+|.
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL--FSHSL--HGLFNVRYLNLKRSF 307 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE--CTTTT--TTCTTCCEEECTTCB
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc--Chhhh--cCCCCccEEeccchh
Confidence 123333332 66666666554444322222346666666666666553 34444 556666666666543
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.6e-21 Score=168.22 Aligned_cols=177 Identities=24% Similarity=0.338 Sum_probs=90.6
Q ss_pred CcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732 111 IQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL 186 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l 186 (350)
++++.|++++|.+..++. .|..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 345566666665555433 45555666666666655555 2 2234555566666655555555432 345555555555
Q ss_pred cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732 187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI 266 (350)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 266 (350)
++ +.+..++...++.+++|++|++++|.+. +..+..++.+++|+.|++++|.+..++..
T Consensus 117 ~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------- 175 (270)
T 2o6q_A 117 DR-NQLKSLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGVFDKLTSLKELRLYNNQLKRVPEG------------- 175 (270)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTT-------------
T ss_pred CC-CccCeeCHHHhCcCcCCCEEECCCCcCC-------ccCHhHccCCcccceeEecCCcCcEeChh-------------
Confidence 55 2233333333455555555555555542 12223345555555555555555444432
Q ss_pred cCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccc
Q 037732 267 GGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEE 313 (350)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 313 (350)
.+..+++|+.|++++|....+|......+++|+.|++++|.+
T Consensus 176 -----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 176 -----AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 223445556666655555555443333345666666666543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.1e-21 Score=181.72 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=184.6
Q ss_pred cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccC
Q 037732 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRD 188 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~ 188 (350)
..+.++.++..+..+|..+. +++++|++++|.+.. +..+..+++|++|++++|.+..++ ..+.++++|+.|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888888664 689999999999988 578999999999999999999776 5789999999999999
Q ss_pred CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe-cCCCCCCccc--ccCCccEEEEE
Q 037732 189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTFPRGL--FLEKLETFKIL 265 (350)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~--~~~~L~~L~l~ 265 (350)
+.+..++...+.++++|++|++++|.+. ...+..+.++++|+.|+++. +.+..++... .+++|++|++.
T Consensus 133 -n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 133 -NWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp -SCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred -CcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 4566777766889999999999999984 33345788999999999998 4566666643 68999999997
Q ss_pred EcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 266 IGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 266 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
.+.+.. .+..+++|+.|++++|....++...+..+++|+.|++++|.++.. .+..+ ..+++|+.|+|++|.++.
T Consensus 205 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--ERNAF--DGLASLVELNLAHNNLSS 280 (452)
T ss_dssp TSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE--CTTTT--TTCTTCCEEECCSSCCSC
T ss_pred CCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE--CHHHh--cCCCCCCEEECCCCcCCc
Confidence 665433 467889999999999888777544444579999999999999984 45666 789999999999999999
Q ss_pred ccCCC
Q 037732 344 NPAES 348 (350)
Q Consensus 344 ~p~~~ 348 (350)
+|+..
T Consensus 281 ~~~~~ 285 (452)
T 3zyi_A 281 LPHDL 285 (452)
T ss_dssp CCTTS
T ss_pred cChHH
Confidence 98753
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=3.3e-21 Score=178.35 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=135.7
Q ss_pred eeeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCC
Q 037732 66 VFSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 145 (350)
.+.+..+.+..++ +..+++|++|++ +.+. ...++ +..+++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 68 ~L~Ls~n~l~~~~-~~~l~~L~~L~L--s~N~-l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 68 KLICTSNNITTLD-LSQNTNLTYLAC--DSNK-LTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp EEECCSSCCSCCC-CTTCTTCSEEEC--CSSC-CSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred EEEccCCcCCeEc-cccCCCCCEEEC--cCCC-Cceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence 4555666777765 778889999999 4444 44444 457889999999999888775 7888999999999998
Q ss_pred CCCchhhhccCCCcEEEecCC-CCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc
Q 037732 146 LLDITVIRDLKKLAVLCLRGS-DIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE 224 (350)
Q Consensus 146 l~~~~~l~~l~~L~~L~l~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 224 (350)
++..+ ++.+++|++|++++| .+..+ .+..+++|+.|++++| .+..+| ++.+++|+.|++++|.+...
T Consensus 139 l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~----- 206 (457)
T 3bz5_A 139 LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNNITKL----- 206 (457)
T ss_dssp CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSCCSCC-----
T ss_pred cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCcCCee-----
Confidence 88853 778889999999888 55555 4778889999999884 455555 57888999999998887421
Q ss_pred cccccchhhcCCCceeEEEecCCCCCCccc-ccCCccEEEEEEcCc
Q 037732 225 GVKNASLHELKHLISLELQIQDVNTFPRGL-FLEKLETFKILIGGV 269 (350)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~ 269 (350)
.++.+++|+.|++++|.+..+| + .+++|+.|++..+.+
T Consensus 207 -----~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 207 -----DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp -----CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred -----ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC
Confidence 2777889999999999988877 4 678899988865543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=181.41 Aligned_cols=223 Identities=20% Similarity=0.270 Sum_probs=184.5
Q ss_pred cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEeccC
Q 037732 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRD 188 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~ 188 (350)
..+.++..+..+..+|..+. .+++.|++++|.+.. +..+.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45678888888888998765 689999999999988 578999999999999999999776 4688999999999999
Q ss_pred CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEec-CCCCCCccc--ccCCccEEEEE
Q 037732 189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQ-DVNTFPRGL--FLEKLETFKIL 265 (350)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~--~~~~L~~L~l~ 265 (350)
+.+..++...+..+++|++|++++|.+. ...+..+.++++|+.|+++.| .+..++... .+++|++|++.
T Consensus 122 -n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 122 -NRLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp -SCCSSCCTTTSCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred -CcCCeeCHhHhhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 4566777755899999999999999984 334457889999999999984 566666543 68999999997
Q ss_pred EcCccc--ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 266 IGGVWG--WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 266 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
.+.+.. .+..+++|+.|++++|....++...+..+++|+.|+|++|.++++ .+..+ ..+++|+.|+|++|.++.
T Consensus 194 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 194 MCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--ERNAF--DNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp TSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTSS--TTCTTCCEEECTTSCCCC
T ss_pred CCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE--Chhhh--cCCCCCCEEECCCCCCCc
Confidence 665433 467889999999999988777544444579999999999999984 45556 789999999999999999
Q ss_pred ccCCC
Q 037732 344 NPAES 348 (350)
Q Consensus 344 ~p~~~ 348 (350)
+|+..
T Consensus 270 ~~~~~ 274 (440)
T 3zyj_A 270 LPHDL 274 (440)
T ss_dssp CCTTT
T ss_pred cChhH
Confidence 98753
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.3e-21 Score=168.09 Aligned_cols=196 Identities=20% Similarity=0.295 Sum_probs=107.2
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD 188 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 188 (350)
.+++|+.|+++++.+..+| .+..+++|++|++++|.+...+.+..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 4555666666666555554 35556666666666666555222556666666666666555554 455566666666665
Q ss_pred CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732 189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG 268 (350)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 268 (350)
|. +..++. +..+++|++|++++|.+...+ . ++.+++|+.|++++|.+..++. +
T Consensus 117 n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------~-l~~l~~L~~L~l~~n~l~~~~~-l-------------- 169 (308)
T 1h6u_A 117 TQ-ITDVTP--LAGLSNLQVLYLDLNQITNIS--------P-LAGLTNLQYLSIGNAQVSDLTP-L-------------- 169 (308)
T ss_dssp SC-CCCCGG--GTTCTTCCEEECCSSCCCCCG--------G-GGGCTTCCEEECCSSCCCCCGG-G--------------
T ss_pred CC-CCCchh--hcCCCCCCEEECCCCccCcCc--------c-ccCCCCccEEEccCCcCCCChh-h--------------
Confidence 32 333443 456666666666666552211 1 5556666666666665554433 1
Q ss_pred cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccC
Q 037732 269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPA 346 (350)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~ 346 (350)
..+++|+.|++++|....++. ...+++|+.|++++|.++++ + .+ ..+++|+.|++++|+++..|.
T Consensus 170 -----~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~---~-~l--~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 170 -----ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV---S-PL--ANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -----TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC---G-GG--TTCTTCCEEEEEEEEEECCCE
T ss_pred -----cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc---c-cc--cCCCCCCEEEccCCeeecCCe
Confidence 233444555555544444432 22346666666666666663 2 23 556666777776666666543
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=6.6e-23 Score=181.11 Aligned_cols=225 Identities=14% Similarity=0.150 Sum_probs=182.9
Q ss_pred ccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc
Q 037732 97 SSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV 175 (350)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l 175 (350)
......+..++..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.....+..+++|++|++++|.+..++.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-- 97 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-- 97 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE--
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC--
Confidence 3445556666777889999999999999765 5789999999999999999873348999999999999999887663
Q ss_pred cCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc-c
Q 037732 176 GELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG-L 254 (350)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-~ 254 (350)
.++|++|++++| .+..++. ..+++|++|++++|.+. +..+..++.+++|+.|++++|.+..++.. +
T Consensus 98 --~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 98 --GPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKIT-------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp --CTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCC-------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred --CCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCC-------CccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 489999999994 4555554 34788999999999983 44456788899999999999998876433 3
Q ss_pred --ccCCccEEEEEEcCcccc--cccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCc
Q 037732 255 --FLEKLETFKILIGGVWGW--EYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ 330 (350)
Q Consensus 255 --~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~ 330 (350)
.+++|++|++..+.+... ...+++|+.|++++|....+|..+. .+++|+.|++++|.++. +|..+ ..+++
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~~---l~~~~--~~l~~ 238 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVL---IEKAL--RFSQN 238 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCE---ECTTC--CCCTT
T ss_pred hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhc-ccCcccEEECcCCcccc---hhhHh--hcCCC
Confidence 368999999976665432 3358899999999998888877755 46999999999999997 67777 78899
Q ss_pred ceEEEEeCccce
Q 037732 331 LKHLYIRGSHLT 342 (350)
Q Consensus 331 L~~L~l~~~~~~ 342 (350)
|+.|++++|+++
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 999999999998
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=5.5e-22 Score=185.15 Aligned_cols=216 Identities=15% Similarity=0.085 Sum_probs=116.0
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEe
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL 163 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l 163 (350)
++|++|++ +.+. ...++...+..+++|++|++++|.+...++ +..+++|++|++++|.+..++ ..++|++|++
T Consensus 34 ~~L~~L~L--s~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDL--SGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (487)
T ss_dssp GGCCEEEC--CSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred CCccEEEe--eCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence 35666666 3333 333333334456666666666666654333 556666666666666555411 1256666666
Q ss_pred cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh-hcCCCceeEE
Q 037732 164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH-ELKHLISLEL 242 (350)
Q Consensus 164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l 242 (350)
++|.+..++.. .+++|+.|++++|......|.. ++++++|++|++++|.+ .+..|..+. .+++|+.|++
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCC-------CCcChHHHhhhCCcccEEec
Confidence 66666555432 3456666666663333322323 45566666666666655 233333443 4566666666
Q ss_pred EecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732 243 QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE 322 (350)
Q Consensus 243 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 322 (350)
++|.+..++.... +++|+.|++++|....+|..+. .+++|+.|++++|.+++ +|..
T Consensus 177 s~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~~---lp~~ 232 (487)
T 3oja_A 177 QYNFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLVL---IEKA 232 (487)
T ss_dssp TTSCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCCE---ECTT
T ss_pred CCCcccccccccc--------------------CCCCCEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCcc---cchh
Confidence 6666555433323 4555555555555555544433 24566666666666655 4444
Q ss_pred hcccCcCcceEEEEeCccce
Q 037732 323 LVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 323 l~~~~~~~L~~L~l~~~~~~ 342 (350)
+ ..+++|+.|++++|++.
T Consensus 233 l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 233 L--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C--CCCTTCCEEECTTCCBC
T ss_pred h--ccCCCCCEEEcCCCCCc
Confidence 4 45566666666666655
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.8e-21 Score=168.47 Aligned_cols=133 Identities=22% Similarity=0.263 Sum_probs=69.9
Q ss_pred cceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccc-ccccCCCCccEEecc
Q 037732 112 QVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLR 187 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~ 187 (350)
++++|++++|.+..++. .+..+++|++|++++|.+.. +..+..+++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555665555554333 45555566666666655555 234555556666666655555444 345555666666665
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP 251 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 251 (350)
+|. +..++...++++++|++|++++|.+.. ..+|..++++++|+.|++++|.+..++
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 109 ETN-LASLENFPIGHLKTLKELNVAHNLIQS------FKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TSC-CCCSTTCCCTTCTTCCEEECCSSCCCC------CCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCC-ccccCchhcccCCCCCEEECcCCccce------ecCchhhccCCCCCEEECCCCCCCcCC
Confidence 532 222332224555666666666555521 123455555666666666666555443
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=9.1e-21 Score=175.29 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=132.9
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEe
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL 163 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l 163 (350)
++|++|++ +.+. ...+|. +..+++|++|++++|.++.+|..+ .+|++|++++|.+..++.++.+++|++|++
T Consensus 131 ~~L~~L~L--~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGV--SNNQ-LEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEEC--CSSC-CSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred CCCCEEEC--cCCC-CCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEEC
Confidence 57888888 4443 445663 567888888888888887776543 478888888888777446777888888888
Q ss_pred cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhc------------cccccch
Q 037732 164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVE------------GVKNASL 231 (350)
Q Consensus 164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------~~~~~~l 231 (350)
++|.+..+|... ++|+.|++++| .+..+|. ++.+++|++|++++|.+...+.... ..+|.
T Consensus 203 ~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~-- 274 (454)
T 1jl5_A 203 DNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE-- 274 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC--
T ss_pred CCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc--
Confidence 777777666432 46777777774 3445663 5677777777777766643221000 00111
Q ss_pred hhcCCCceeEEEecCCCCCCcc---c--------------c-cCCccEEEEEEcCcccccccCccceEEEEeCCCcccch
Q 037732 232 HELKHLISLELQIQDVNTFPRG---L--------------F-LEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLK 293 (350)
Q Consensus 232 ~~l~~L~~L~l~~~~~~~l~~~---~--------------~-~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 293 (350)
..++|+.|++++|.+..+|.. + . .++|++|++..+.+...-..+++|+.|++++|....+|
T Consensus 275 -~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp 353 (454)
T 1jl5_A 275 -LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVP 353 (454)
T ss_dssp -CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred -ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcccccc
Confidence 113455555555544432211 0 0 13455555544443332233466777777776666666
Q ss_pred HHHHHHhcccceeeeccccccchhhhhhhhcccCc-------------CcceEEEEeCcccee
Q 037732 294 DGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGP-------------SQLKHLYIRGSHLTL 343 (350)
Q Consensus 294 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~-------------~~L~~L~l~~~~~~~ 343 (350)
. .+++|+.|++++|.++++..+|..+ ..+ ++|+.|++++|++++
T Consensus 354 ~----~l~~L~~L~L~~N~l~~l~~ip~~l--~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 354 E----LPQNLKQLHVEYNPLREFPDIPESV--EDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp C----CCTTCCEEECCSSCCSSCCCCCTTC--CEEECCC------------------------
T ss_pred c----hhhhccEEECCCCCCCcCCCChHHH--HhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 4 2577777777777777644455555 334 677888888887774
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.5e-20 Score=181.30 Aligned_cols=73 Identities=10% Similarity=-0.121 Sum_probs=55.8
Q ss_pred cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 271 GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
..+..+++|+.|++++|....++...+..+++|+.|+|++|+++++ .+..+ ..+++|+.|++++|+++.+|++
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~--~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPY--KCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC--CCGGG--TTCTTCCEEECTTSCCCBCCSS
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC--ChhHH--hCCCCCCEEECCCCcCCCCCHH
Confidence 3566778889999988877776544344568899999999988884 34455 6788999999999998888764
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=4.7e-20 Score=170.54 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=126.5
Q ss_pred eeecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCC
Q 037732 67 FSATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKL 146 (350)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l 146 (350)
+.++.+.+..+|.. .++|+.|++ +.+ ....++. ..++|++|++++|.+..+| .++.+++|++|++++|.+
T Consensus 96 L~l~~n~l~~lp~~--~~~L~~L~l--~~n-~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 96 LVASCNSLTELPEL--PQSLKSLLV--DNN-NLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp EECCSSCCSSCCCC--CTTCCEEEC--CSS-CCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred EEccCCcCCccccc--cCCCcEEEC--CCC-ccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcC
Confidence 33444455555542 367888888 443 3344442 1268999999999999988 599999999999999998
Q ss_pred CC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732 147 LD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG 225 (350)
Q Consensus 147 ~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 225 (350)
+. +.. ..+|++|++++|.+..+| .++.+++|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 166 ~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~-------- 228 (454)
T 1jl5_A 166 KKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILE-------- 228 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS--------
T ss_pred cccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCC--------
Confidence 88 433 359999999999999988 69999999999999954 4556652 258999999999873
Q ss_pred ccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732 226 VKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG 267 (350)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~ 267 (350)
.+| .++.+++|+.|++++|.+..+|.. .++|++|++..+
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N 267 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN 267 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSS
T ss_pred ccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCC
Confidence 344 377788888888888877766654 355555555443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=2.4e-20 Score=177.92 Aligned_cols=226 Identities=19% Similarity=0.159 Sum_probs=172.9
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEe
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCL 163 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l 163 (350)
.+++.|++ .++....+|..++ ++|+.|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++
T Consensus 40 ~~l~~L~l---s~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNV---GESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEEC---CSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEe---cCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence 36889999 4444668887543 799999999999998887 57899999999999988433 7899999999
Q ss_pred cCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhc---------
Q 037732 164 RGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHEL--------- 234 (350)
Q Consensus 164 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l--------- 234 (350)
++|.+..+|. .+++|+.|++++| .+..+|.. +++|++|++++|.+...+. .+..+..+
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC
T ss_pred cCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCCCCC
Confidence 9999999987 6789999999984 56667763 4889999999998854321 12222222
Q ss_pred -----CCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732 235 -----KHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS 309 (350)
Q Consensus 235 -----~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 309 (350)
++|+.|++++|.+..+|.. .++|+.|.+..+.+...-..+++|+.|++++|....+| ..+++|+.|+|+
T Consensus 176 l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls 249 (622)
T 3g06_A 176 LPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVS 249 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECC
Confidence 6777777777777777665 56777777766665544445678888888888777776 235888999999
Q ss_pred cccccchhhhhhhhcccCcCcceEEEEeCccceeccCC
Q 037732 310 YLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 310 ~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
+|.++. +|. .+++|+.|++++|.++.+|+.
T Consensus 250 ~N~L~~---lp~-----~~~~L~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 250 GNRLTS---LPM-----LPSGLLSLSVYRNQLTRLPES 279 (622)
T ss_dssp SSCCSC---CCC-----CCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCCc---CCc-----ccccCcEEeCCCCCCCcCCHH
Confidence 888887 443 468899999999999888763
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=1.6e-20 Score=163.50 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=125.1
Q ss_pred eecccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCC
Q 037732 68 SATEEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLL 147 (350)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~ 147 (350)
......+..+|... .++++.|++ +.+. ...++...+..+++|+.|++++|.++.++.. ..+++|++|++++|.+.
T Consensus 16 ~~~~~~l~~ip~~~-~~~l~~L~L--~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 16 NCDKRNLTALPPDL-PKDTTILHL--SENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp ECTTSCCSSCCSCC-CTTCCEEEC--TTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS
T ss_pred ECCCCCCCcCCCCC-CCCCCEEEc--CCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC
Confidence 34455666666422 267888888 4444 4444444456788888888888888776553 67888888888888887
Q ss_pred C-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732 148 D-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEG 225 (350)
Q Consensus 148 ~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 225 (350)
. +..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..++...+..+++|+.|++++|.+..
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 162 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE------- 162 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC-------
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc-------
Confidence 7 6667788888888888888887764 577888888888888 44556666656788888888888887732
Q ss_pred ccccchhhcCCCceeEEEecCCCCCCccc
Q 037732 226 VKNASLHELKHLISLELQIQDVNTFPRGL 254 (350)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~ 254 (350)
..+..+..+++|+.|++++|.+..+|..+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 22345677888888888888888777764
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=8.7e-21 Score=163.79 Aligned_cols=207 Identities=20% Similarity=0.225 Sum_probs=147.8
Q ss_pred cccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhh
Q 037732 76 LLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIR 153 (350)
Q Consensus 76 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~ 153 (350)
.......+++++.|.+ . +.....++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++. + ..+.
T Consensus 33 ~~~~~~~l~~L~~L~l--~-~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 33 DAVTQNELNSIDQIIA--N-NSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp SEECHHHHTTCCEEEC--T-TSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccccccccceeeeee--C-CCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence 3334456677888888 3 333444443 457888888888888877654 57788888888888888777 3 4467
Q ss_pred ccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732 154 DLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH 232 (350)
Q Consensus 154 ~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 232 (350)
.+++|++|++++|.+..++.. +..+++|++|++++| .+..++...++++++|++|++++|.+ .+..+..++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~ 178 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL-------QSLPEGVFD 178 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTT
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc-------CccCHHHhc
Confidence 788888888888888776654 677888888888874 44556655467788888888888877 333345567
Q ss_pred hcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecccc
Q 037732 233 ELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLE 312 (350)
Q Consensus 233 ~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 312 (350)
.+++|+.|++++|.+..++.. .++.+++|+.|++++|.... .+++|+.|++..|.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~------------------~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDG------------------VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 233 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTT------------------TTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHH
T ss_pred CCccCCEEECCCCcCCccCHH------------------HHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHh
Confidence 778888888888877766554 34567788888888875432 25788999999988
Q ss_pred ccchhhhhhhh
Q 037732 313 EQDVNYFVNEL 323 (350)
Q Consensus 313 l~~~~~~~~~l 323 (350)
+++. +|..+
T Consensus 234 ~~g~--ip~~~ 242 (272)
T 3rfs_A 234 HSGV--VRNSA 242 (272)
T ss_dssp TGGG--BBCTT
T ss_pred CCCc--ccCcc
Confidence 8874 77766
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=6.7e-21 Score=164.52 Aligned_cols=198 Identities=20% Similarity=0.311 Sum_probs=149.8
Q ss_pred hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732 108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL 186 (350)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l 186 (350)
..+++|+.|+++++.+..++. +..+++|++|++++|.+..++.+..+++|++|++++|.+..++.. +..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 467888888888888776654 778888899999888888877788888888888888888877654 678888888888
Q ss_pred cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEE
Q 037732 187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILI 266 (350)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 266 (350)
++|. +..++...++++++|++|++++|.+ .+..+..++.+++|+.|++++|.+..++..
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 175 (272)
T 3rfs_A 117 VENQ-LQSLPDGVFDKLTNLTYLNLAHNQL-------QSLPKGVFDKLTNLTELDLSYNQLQSLPEG------------- 175 (272)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------
T ss_pred CCCc-CCccCHHHhccCCCCCEEECCCCcc-------CccCHHHhccCccCCEEECCCCCcCccCHH-------------
Confidence 8844 4555655467888888888888877 333345567888888888888887776654
Q ss_pred cCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 267 GGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
.++.+++|+.|++++|.....+......+++|+.|++++|.+.. .+|+|+.|+++.|.+++
T Consensus 176 -----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 176 -----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp -----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----------CTTTTHHHHHHHHHTGG
T ss_pred -----HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----------cCcHHHHHHHHHHhCCC
Confidence 23467788888888877777665544456889999998887654 35677777777777764
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=4.4e-20 Score=159.75 Aligned_cols=213 Identities=19% Similarity=0.292 Sum_probs=158.1
Q ss_pred ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-
Q 037732 71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD- 148 (350)
Q Consensus 71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~- 148 (350)
+..+..+|... .+++++|++ +.+ ....++...+.++++|++|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 16 ~~~l~~ip~~l-~~~l~~L~l--s~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 16 ELNFYKIPDNL-PFSTKNLDL--SFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp TSCCSSCCSSS-CTTCCEEEC--TTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCccccCCCC-CCCccEEEC--CCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 34555666522 257999999 444 4555555446789999999999999987554 78999999999999999988
Q ss_pred -chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCC-ccCcchhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732 149 -ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELE-VIPPNILSNLSHLEELYMGPRSFDKWEVEVEG 225 (350)
Q Consensus 149 -~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 225 (350)
+..+..+++|++|++++|.+..++. .+..+++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~------- 163 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS------- 163 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE-------
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCc-------
Confidence 4778999999999999999987776 68999999999999955433 25666 7999999999999999843
Q ss_pred ccccchhhcCCCc----eeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhc
Q 037732 226 VKNASLHELKHLI----SLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLE 301 (350)
Q Consensus 226 ~~~~~l~~l~~L~----~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 301 (350)
..+..+..+++++ .|++++|.+..++.... ...+|+.|++++|....+|......++
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-------------------KEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-------------------CSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCcccc-------------------CCCcccEEECCCCceeecCHhHhcccc
Confidence 3345566666666 88999998887766531 122466666666555555544434456
Q ss_pred ccceeeecccccc
Q 037732 302 GIEDLWLSYLEEQ 314 (350)
Q Consensus 302 ~L~~L~L~~n~l~ 314 (350)
+|+.|++++|.++
T Consensus 225 ~L~~L~l~~N~~~ 237 (276)
T 2z62_A 225 SLQKIWLHTNPWD 237 (276)
T ss_dssp SCCEEECCSSCBC
T ss_pred cccEEEccCCccc
Confidence 6666777666554
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.6e-19 Score=155.74 Aligned_cols=158 Identities=27% Similarity=0.402 Sum_probs=78.9
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEecCCCCCC-c-hhhhccCCCcE
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAV 160 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~ 160 (350)
++++.|++ +. +....++...+..+++|++|++++|.+..+|.. |..+++|++|++++|.+.. + ..+..+++|++
T Consensus 37 ~~l~~L~l--~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDL--QS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEEC--CS-SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEEC--cC-CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 34555555 22 223333333344555555555555555554443 3455555555555555554 2 33455555555
Q ss_pred EEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCce
Q 037732 161 LCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLIS 239 (350)
Q Consensus 161 L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 239 (350)
|++++|.+..++. .+..+++|++|++++| .+..++...+..+++|++|++++|.+. +..+..+.++++|+.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-------RVPEGAFDKLTELKT 185 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCE
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-------EeChhHhccCCCcCE
Confidence 5555555554443 2455555555555552 333444433455555555555555542 222233455555555
Q ss_pred eEEEecCCCCCCc
Q 037732 240 LELQIQDVNTFPR 252 (350)
Q Consensus 240 L~l~~~~~~~l~~ 252 (350)
|++++|.+..+|.
T Consensus 186 L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 186 LKLDNNQLKRVPE 198 (270)
T ss_dssp EECCSSCCSCCCT
T ss_pred EECCCCcCCcCCH
Confidence 5555555554444
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.1e-19 Score=159.68 Aligned_cols=173 Identities=18% Similarity=0.226 Sum_probs=136.0
Q ss_pred cccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhh
Q 037732 74 TNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIR 153 (350)
Q Consensus 74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~ 153 (350)
+........+++|++|++ +. .....++. +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.+.
T Consensus 31 ~~~~~~~~~l~~L~~L~l--~~-~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 104 (308)
T 1h6u_A 31 VTDTVTQADLDGITTLSA--FG-TGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIA 104 (308)
T ss_dssp TTSEECHHHHHTCCEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGT
T ss_pred cCceecHHHcCCcCEEEe--eC-CCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhc
Confidence 333334456789999999 44 44555663 5689999999999999988877 899999999999999998877899
Q ss_pred ccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhh
Q 037732 154 DLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHE 233 (350)
Q Consensus 154 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 233 (350)
.+++|++|++++|.+..++. +..+++|++|++++| .+..++. ++.+++|++|++++|.+.. ++. +..
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~--------~~~-l~~ 171 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD--------LTP-LAN 171 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC--------CGG-GTT
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC--------Chh-hcC
Confidence 99999999999999998874 889999999999994 4555665 6889999999999998743 222 888
Q ss_pred cCCCceeEEEecCCCCCCcccccCCccEEEEE
Q 037732 234 LKHLISLELQIQDVNTFPRGLFLEKLETFKIL 265 (350)
Q Consensus 234 l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~ 265 (350)
+++|+.|++++|.+..++....+++|++|++.
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 99999999999998877652234444444443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=2.8e-20 Score=163.89 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=161.4
Q ss_pred ccEEEecccCCcc-ccccChHHH------hcCCcceEEeecCCcCc-CCCccc--cCcccccEEEecCCCCCC-chhhhc
Q 037732 86 LELLFICADKESS-SLTIPNKFF------ERMIQVRVINFSYMNLL-SLPSSL--GLLSNLQNLSLYNCKLLD-ITVIRD 154 (350)
Q Consensus 86 L~~L~l~~~~~~~-~~~~~~~~~------~~l~~L~~L~l~~~~~~-~lp~~l--~~l~~L~~L~l~~~~l~~-~~~l~~ 154 (350)
++.|++ +.+.. ...++..+. ..+++|++|++++|.+. ..|..+ ..+++|++|++++|.+.. +..++.
T Consensus 65 L~~L~L--~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSL--KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHCCC--CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred Hhhccc--ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence 667777 33333 223454332 15889999999999888 477765 788999999999998887 667777
Q ss_pred c-----CCCcEEEecCCCCcccc-ccccCCCCccEEeccCCCCCCc--cCcc-hhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732 155 L-----KKLAVLCLRGSDIKRLP-VEVGELTLLRLLDLRDCMELEV--IPPN-ILSNLSHLEELYMGPRSFDKWEVEVEG 225 (350)
Q Consensus 155 l-----~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~ 225 (350)
+ ++|++|++++|.+..++ ..++.+++|++|++++|...+. ++.. .++++++|++|++++|.+...+.
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---- 218 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG---- 218 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH----
Confidence 6 88999999999888776 5788899999999998654443 2322 12788899999999888853221
Q ss_pred ccccchhhcCCCceeEEEecCCCCCC--ccc-ccCCccEEEEEEcCcc---cccccCccceEEEEeCCCcccchHHHHHH
Q 037732 226 VKNASLHELKHLISLELQIQDVNTFP--RGL-FLEKLETFKILIGGVW---GWEYADIWCREFKIDLDSKIRLKDGLILK 299 (350)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~-~~~~L~~L~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 299 (350)
.....+..+++|+.|++++|.+...+ ... .+++|++|++..+.+. ..+. ++|+.|++++|.....|. + ..
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~-~~ 294 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-P-DE 294 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-T-TT
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-H-hh
Confidence 11233456789999999999887654 222 4688999998766543 3333 789999999998888875 3 45
Q ss_pred hcccceeeeccccccc
Q 037732 300 LEGIEDLWLSYLEEQD 315 (350)
Q Consensus 300 ~~~L~~L~L~~n~l~~ 315 (350)
+++|+.|++++|.+++
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 7999999999999876
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.6e-20 Score=173.86 Aligned_cols=200 Identities=14% Similarity=0.143 Sum_probs=161.0
Q ss_pred CCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732 110 MIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD 188 (350)
Q Consensus 110 l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 188 (350)
+++|+.|++++|.+..+ |..|..+++|++|++++|.+.....++.+++|++|++++|.+..+|. .++|++|++++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 34899999999999975 46899999999999999999873338999999999999999887764 38999999999
Q ss_pred CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732 189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG 268 (350)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 268 (350)
|. +..++. ..+++|++|++++|.+ .+..+..++.+++|+.|++++|.+..++...
T Consensus 109 N~-l~~~~~---~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------- 163 (487)
T 3oja_A 109 NN-ISRVSC---SRGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-------------- 163 (487)
T ss_dssp SC-CCCEEE---CCCSSCEEEECCSSCC-------CSGGGBCGGGGSSEEEEECTTSCCCEEEGGG--------------
T ss_pred Cc-CCCCCc---cccCCCCEEECCCCCC-------CCCCchhhcCCCCCCEEECCCCCCCCcChHH--------------
Confidence 54 444454 3568899999999998 4555677889999999999999887643221
Q ss_pred cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceeccCCC
Q 037732 269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNPAES 348 (350)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p~~~ 348 (350)
+...+++|+.|++++|.....+... .+++|+.|+|++|.+++ +|..+ ..+++|+.|++++|.++.+|+..
T Consensus 164 ---l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~---~~~~~--~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 164 ---LAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF---MGPEF--QSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp ---GGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSCCCE---ECGGG--GGGTTCSEEECTTSCCCEECTTC
T ss_pred ---HhhhCCcccEEecCCCccccccccc--cCCCCCEEECCCCCCCC---CCHhH--cCCCCccEEEecCCcCcccchhh
Confidence 1225677888888887766655332 36999999999999998 66667 78999999999999999999754
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=9.4e-20 Score=160.37 Aligned_cols=205 Identities=13% Similarity=0.063 Sum_probs=157.2
Q ss_pred cCCcceEEeecCCcCcC-CCccc--cCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCcccc-ccccCC
Q 037732 109 RMIQVRVINFSYMNLLS-LPSSL--GLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIKRLP-VEVGEL 178 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~-lp~~l--~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l 178 (350)
.+++|+.|++++|.+.. .|..+ ..+++|++|++++|.+.. + ..+..+++|++|++++|.+..++ ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45779999999999884 66666 889999999999999876 2 33456899999999999998666 468899
Q ss_pred CCccEEeccCCCCCCc--cC-cchhCCCCCCcEEEcCCCCCCcchhhhcccccc-chhhcCCCceeEEEecCCCCC-Ccc
Q 037732 179 TLLRLLDLRDCMELEV--IP-PNILSNLSHLEELYMGPRSFDKWEVEVEGVKNA-SLHELKHLISLELQIQDVNTF-PRG 253 (350)
Q Consensus 179 ~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l-~~~ 253 (350)
++|++|++++|...+. ++ ...++.+++|++|++++|.+...+. .+. .++.+++|+.|++++|.+... |..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 9999999999654431 22 2214678999999999998854322 122 257889999999999998876 554
Q ss_pred cccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceE
Q 037732 254 LFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKH 333 (350)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~ 333 (350)
+. .+..+++|++|++++|....+|..+ +++|+.|+|++|.++++ |. + ..+++|+.
T Consensus 244 ~~----------------~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~---~~-~--~~l~~L~~ 298 (310)
T 4glp_A 244 AP----------------RCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA---PQ-P--DELPEVDN 298 (310)
T ss_dssp CS----------------SCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC---CC-T--TSCCCCSC
T ss_pred HH----------------hccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC---ch-h--hhCCCccE
Confidence 31 1122368888999888888887654 37999999999999983 33 4 67899999
Q ss_pred EEEeCcccee
Q 037732 334 LYIRGSHLTL 343 (350)
Q Consensus 334 L~l~~~~~~~ 343 (350)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999875
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=8e-20 Score=154.66 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=151.5
Q ss_pred ccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCC-CCC-c-hhhhccCCCcEEEecC-CCCccccc
Q 037732 99 SLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCK-LLD-I-TVIRDLKKLAVLCLRG-SDIKRLPV 173 (350)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~-l~~-~-~~l~~l~~L~~L~l~~-~~~~~lp~ 173 (350)
...+|. + ..+++.|++++|.++.+|. .|..+++|++|++++|. ++. + ..+..+++|++|++++ |.+..+|.
T Consensus 23 l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 556665 2 3478899999988887665 67888899999999886 776 3 4678888999999987 78887774
Q ss_pred -cccCCCCccEEeccCCCCCCccCcchhCCCCCCc---EEEcCCC-CCCcchhhhccccccchhhcCCCc-eeEEEecCC
Q 037732 174 -EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE---ELYMGPR-SFDKWEVEVEGVKNASLHELKHLI-SLELQIQDV 247 (350)
Q Consensus 174 -~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~ 247 (350)
.+..+++|++|++++| .+..+|. +..+++|+ +|++++| .+. +..+..+.++++|+ .|++++|.+
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~-------~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMT-------SIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCC-------EECTTTTTTTBSSEEEEECCSCCC
T ss_pred HHhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcchh-------hcCcccccchhcceeEEEcCCCCC
Confidence 5778888999998884 4555665 67777777 8888888 663 23334577888888 888888887
Q ss_pred CCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCC-cccchHHHHHHh-cccceeeeccccccchhhhhhhhcc
Q 037732 248 NTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDS-KIRLKDGLILKL-EGIEDLWLSYLEEQDVNYFVNELVK 325 (350)
Q Consensus 248 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~l~~ 325 (350)
..+|... +.. ++|+.|++++|. ...++...+..+ ++|+.|++++|.++. +|.
T Consensus 169 ~~i~~~~------------------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~---l~~---- 222 (239)
T 2xwt_C 169 TSVQGYA------------------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA---LPS---- 222 (239)
T ss_dssp CEECTTT------------------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC---CCC----
T ss_pred cccCHhh------------------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc---CCh----
Confidence 7766652 223 678888888884 777765555556 899999999999987 443
Q ss_pred cCcCcceEEEEeCcc
Q 037732 326 VGPSQLKHLYIRGSH 340 (350)
Q Consensus 326 ~~~~~L~~L~l~~~~ 340 (350)
..+++|+.|++.++.
T Consensus 223 ~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 KGLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCSEEECTTC-
T ss_pred hHhccCceeeccCcc
Confidence 357899999998764
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.9e-19 Score=152.31 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=163.2
Q ss_pred ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCc-CcCCCc-cccCcccccEEEecC-CCCC
Q 037732 71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN-LLSLPS-SLGLLSNLQNLSLYN-CKLL 147 (350)
Q Consensus 71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~l~~l~~L~~L~l~~-~~l~ 147 (350)
+..+..+|. -.+++++|++ +. +....++...+..+++|+.|++++|. ++.++. .|..+++|++|++++ |.++
T Consensus 20 c~~l~~ip~--~~~~l~~L~l--~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKL--IE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEE--ES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccCccccCC--CCCcccEEEE--eC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 444777777 3458999999 44 44666776557789999999999997 887665 789999999999998 8888
Q ss_pred C--chhhhccCCCcEEEecCCCCccccccccCCCCcc---EEeccCCCCCCccCcchhCCCCCCc-EEEcCCCCCCcchh
Q 037732 148 D--ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLR---LLDLRDCMELEVIPPNILSNLSHLE-ELYMGPRSFDKWEV 221 (350)
Q Consensus 148 ~--~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~ 221 (350)
. +..+..+++|++|++++|.+..+|. +..+++|+ +|++++|..+..++...+.++++|+ +|++++|.+...+.
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 8 3578899999999999999999986 88888888 9999996477888876688999999 99999998843321
Q ss_pred hhccccccchhhcCCCceeEEEecC-CCCCCcccccCCccEEEEEEcCcccccccC-ccceEEEEeCCCcccchHHHHHH
Q 037732 222 EVEGVKNASLHELKHLISLELQIQD-VNTFPRGLFLEKLETFKILIGGVWGWEYAD-IWCREFKIDLDSKIRLKDGLILK 299 (350)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 299 (350)
..+.. ++|+.|++++|. +..++.. .+..+ ++|+.|++++|....+|.. .
T Consensus 174 -------~~~~~-~~L~~L~L~~n~~l~~i~~~------------------~~~~l~~~L~~L~l~~N~l~~l~~~---~ 224 (239)
T 2xwt_C 174 -------YAFNG-TKLDAVYLNKNKYLTVIDKD------------------AFGGVYSGPSLLDVSQTSVTALPSK---G 224 (239)
T ss_dssp -------TTTTT-CEEEEEECTTCTTCCEECTT------------------TTTTCSBCCSEEECTTCCCCCCCCT---T
T ss_pred -------hhcCC-CCCCEEEcCCCCCcccCCHH------------------HhhccccCCcEEECCCCccccCChh---H
Confidence 23334 789999999995 8877655 23455 7788888888877777754 4
Q ss_pred hcccceeeeccc
Q 037732 300 LEGIEDLWLSYL 311 (350)
Q Consensus 300 ~~~L~~L~L~~n 311 (350)
+++|+.|+++++
T Consensus 225 ~~~L~~L~l~~~ 236 (239)
T 2xwt_C 225 LEHLKELIARNT 236 (239)
T ss_dssp CTTCSEEECTTC
T ss_pred hccCceeeccCc
Confidence 688898888854
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=1.5e-18 Score=147.93 Aligned_cols=176 Identities=20% Similarity=0.282 Sum_probs=109.9
Q ss_pred cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccC
Q 037732 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRD 188 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~ 188 (350)
..+.++++++.+..+|..+. ..++.|++++|.+.. +..+..+++|++|++++|.+..++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45566666666666666544 467777777777666 3456667777777777776665544 356677777777776
Q ss_pred CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcC
Q 037732 189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGG 268 (350)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 268 (350)
+.+..++...+..+++|++|++++|.+. +..+..+..+++|+.|++++|.+..++..
T Consensus 93 -n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------- 149 (251)
T 3m19_A 93 -NQLASLPLGVFDHLTQLDKLYLGGNQLK-------SLPSGVFDRLTKLKELRLNTNQLQSIPAG--------------- 149 (251)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------
T ss_pred -CcccccChhHhcccCCCCEEEcCCCcCC-------CcChhHhccCCcccEEECcCCcCCccCHH---------------
Confidence 3344555444566777777777777662 22233456667777777777776666553
Q ss_pred cccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccc
Q 037732 269 VWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQD 315 (350)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 315 (350)
.++.+++|+.|++++|....++......+++|+.|++++|.++.
T Consensus 150 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 ---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 22344556666666655555544333346788888888887754
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=6.5e-20 Score=166.42 Aligned_cols=192 Identities=16% Similarity=0.081 Sum_probs=86.6
Q ss_pred cCcccccEEEecCCCCCC------chhhhccCCCcEEEecCCCCc-----cccccccCC---------CCccEEeccCCC
Q 037732 131 GLLSNLQNLSLYNCKLLD------ITVIRDLKKLAVLCLRGSDIK-----RLPVEVGEL---------TLLRLLDLRDCM 190 (350)
Q Consensus 131 ~~l~~L~~L~l~~~~l~~------~~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l---------~~L~~L~l~~~~ 190 (350)
..+++|++|++++|.+.. +..+..+++|++|++++|.+. .++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445555555555555543 134455555555555555554 122222223 555555555533
Q ss_pred CC-CccCc--chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC-----CCCCcccccCCccEE
Q 037732 191 EL-EVIPP--NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV-----NTFPRGLFLEKLETF 262 (350)
Q Consensus 191 ~~-~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~~l~~~~~~~~L~~L 262 (350)
.. ..++. ..+..+++|++|++++|.+..... ....+..+..+++|+.|++++|.+ ..+|.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~--~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~---------- 238 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI--EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI---------- 238 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH--HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH--HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----------
Confidence 22 12221 113445555555555554421100 001222445555555555555554 22233
Q ss_pred EEEEcCcccccccCccceEEEEeCCCcccc-----hHHHHH-Hhcccceeeeccccccc--hhhhhhhhcccCcCcceEE
Q 037732 263 KILIGGVWGWEYADIWCREFKIDLDSKIRL-----KDGLIL-KLEGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHL 334 (350)
Q Consensus 263 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~-~~~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L 334 (350)
.+..+++|+.|++++|..... +.++.. .+++|+.|+|++|.++. ...++..+. ..+++|+.|
T Consensus 239 ---------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L 308 (386)
T 2ca6_A 239 ---------ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFL 308 (386)
T ss_dssp ---------HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEE
T ss_pred ---------HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEE
Confidence 344555566666655544332 222211 13556666666666554 111333331 234666666
Q ss_pred EEeCccceec
Q 037732 335 YIRGSHLTLN 344 (350)
Q Consensus 335 ~l~~~~~~~~ 344 (350)
++++|+++..
T Consensus 309 ~l~~N~l~~~ 318 (386)
T 2ca6_A 309 ELNGNRFSEE 318 (386)
T ss_dssp ECTTSBSCTT
T ss_pred EccCCcCCcc
Confidence 6666665543
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=7.1e-20 Score=170.01 Aligned_cols=107 Identities=14% Similarity=0.024 Sum_probs=56.6
Q ss_pred cCCCceeEEEecCCCC-----CCccc-ccCCccEEEEEEcCccc----cc-----ccCccceEEEEeCCCccc-----ch
Q 037732 234 LKHLISLELQIQDVNT-----FPRGL-FLEKLETFKILIGGVWG----WE-----YADIWCREFKIDLDSKIR-----LK 293 (350)
Q Consensus 234 l~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~----~~-----~~~~~L~~L~l~~~~~~~-----~~ 293 (350)
+++|+.|++++|.+.. ++..+ .+++|++|++..+.+.. .+ ...++|+.|++++|.... ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4556666666665543 33333 35666666665444321 11 122466777776654433 23
Q ss_pred HHHHHHhcccceeeeccccccch--hhhhhhhcccCcCcceEEEEeCccce
Q 037732 294 DGLILKLEGIEDLWLSYLEEQDV--NYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 294 ~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
.++.. +++|+.|++++|.+++. ..+...+. ...++|++|++++|.++
T Consensus 335 ~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 335 SVLAQ-NRFLLELQISNNRLEDAGVRELCQGLG-QPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCC
T ss_pred HHHhh-CCCccEEEccCCccccccHHHHHHHHc-CCCCceEEEECCCCCCC
Confidence 33332 47777777777777652 11112221 12567888888887776
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=6.6e-20 Score=170.20 Aligned_cols=259 Identities=18% Similarity=0.145 Sum_probs=181.9
Q ss_pred ccCCCCCccEEEecccCCccccccChHHHh----cCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCCCCC-
Q 037732 79 EVVECPQLELLFICADKESSSLTIPNKFFE----RMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCKLLD- 148 (350)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~l~~- 148 (350)
.+..+++|++|++ +.+......+..+.. ..++|+.|++++|.++. ++..+..+++|++|++++|.+..
T Consensus 108 ~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 108 TLRTLPTLQELHL--SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HTTSCTTCCEEEC--CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHccCCceeEEEC--CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 4457788888888 555433332332222 24578899998888774 35566777899999999988765
Q ss_pred -chhhhc-----cCCCcEEEecCCCCcc-----ccccccCCCCccEEeccCCCCCCc----cCcchhCCCCCCcEEEcCC
Q 037732 149 -ITVIRD-----LKKLAVLCLRGSDIKR-----LPVEVGELTLLRLLDLRDCMELEV----IPPNILSNLSHLEELYMGP 213 (350)
Q Consensus 149 -~~~l~~-----l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~ 213 (350)
+..+.. .++|++|++++|.+.. ++..+..+++|++|++++|..... ++......+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 344432 5689999999998874 567778889999999998643221 2233234688999999999
Q ss_pred CCCCcchhhhccccccchhhcCCCceeEEEecCCCCC-----Cccc--ccCCccEEEEEEcCcc--------cccccCcc
Q 037732 214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF-----PRGL--FLEKLETFKILIGGVW--------GWEYADIW 278 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~--------~~~~~~~~ 278 (350)
|.+.... ...++..+..+++|+.|++++|.+... ...+ ..++|++|++..+.+. .++..+++
T Consensus 266 n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 266 CGITAKG---CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp SCCCHHH---HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CCCCHHH---HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 9874322 123567788899999999999987532 1211 1258999999766643 24567799
Q ss_pred ceEEEEeCCCcccc-hHHHHHH----hcccceeeeccccccc--hhhhhhhhcccCcCcceEEEEeCccceec
Q 037732 279 CREFKIDLDSKIRL-KDGLILK----LEGIEDLWLSYLEEQD--VNYFVNELVKVGPSQLKHLYIRGSHLTLN 344 (350)
Q Consensus 279 L~~L~l~~~~~~~~-~~~~~~~----~~~L~~L~L~~n~l~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 344 (350)
|+.|++++|..... +..+... .++|+.|++++|.+++ ...++..+ ..+++|++|++++|+++..
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL--LANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCCCCCEEECCSSSCCHH
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH--HhCCCccEEECCCCCCCHH
Confidence 99999999866543 2333332 4699999999999984 11367777 6789999999999998753
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.1e-18 Score=152.08 Aligned_cols=128 Identities=27% Similarity=0.380 Sum_probs=73.8
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccC
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRD 188 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~ 188 (350)
.+++|+.|++++|.+..++. +..+++|++|++++|.+...+.+..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCC
Confidence 45666666666666665543 5666666666666666666323666666666666666666554 356666666666666
Q ss_pred CCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732 189 CMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250 (350)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 250 (350)
| .+..++. +..+++|++|++++|.+... ..+..+++|+.|++++|.+..+
T Consensus 122 n-~i~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 122 N-GISDING--LVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp S-CCCCCGG--GGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCC
T ss_pred C-cCCCChh--hcCCCCCCEEEccCCcCCcc---------hhhccCCCCCEEEccCCccccc
Confidence 3 2333332 45566666666666555221 2355555666666666555443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=6.2e-19 Score=155.12 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=155.0
Q ss_pred CCCCccEEEecccCCccccccChHHH-hcCCcceEEeecCCcCcC-CC----ccccCcccccEEEecCCCCCC--chhhh
Q 037732 82 ECPQLELLFICADKESSSLTIPNKFF-ERMIQVRVINFSYMNLLS-LP----SSLGLLSNLQNLSLYNCKLLD--ITVIR 153 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~l~~l~~L~~L~l~~~~l~~--~~~l~ 153 (350)
.+++|++|++ +.+...+..|..++ ..+++|++|++++|.+.. .+ ..+..+++|++|++++|.+.. +..++
T Consensus 89 ~~~~L~~L~l--~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTL--EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HHSCCCEEEE--ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ccCceeEEEe--eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 3467999999 67766666776543 689999999999999885 33 344578999999999999987 47888
Q ss_pred ccCCCcEEEecCCCCcc---cccc--ccCCCCccEEeccCCCCCCccCc---chhCCCCCCcEEEcCCCCCCcchhhhcc
Q 037732 154 DLKKLAVLCLRGSDIKR---LPVE--VGELTLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMGPRSFDKWEVEVEG 225 (350)
Q Consensus 154 ~l~~L~~L~l~~~~~~~---lp~~--l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 225 (350)
.+++|++|++++|++.. ++.. +..+++|++|++++|. +..++. ..++++++|++|++++|.+ .+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-------~~ 238 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSL-------RA 238 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCC-------CC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCC-------Cc
Confidence 99999999999998753 4332 4689999999999954 444443 2357889999999999998 44
Q ss_pred ccccchhhc---CCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcc
Q 037732 226 VKNASLHEL---KHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEG 302 (350)
Q Consensus 226 ~~~~~l~~l---~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 302 (350)
..|..+..+ ++|+.|++++|.+..+|..+ .++|+.|++++|....+|. ...+++
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---------------------~~~L~~L~Ls~N~l~~~~~--~~~l~~ 295 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---------------------PAKLRVLDLSSNRLNRAPQ--PDELPE 295 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---------------------CSCCSCEECCSCCCCSCCC--TTSCCC
T ss_pred cchhhHHhccCcCcCCEEECCCCCCCchhhhh---------------------cCCCCEEECCCCcCCCCch--hhhCCC
Confidence 445556665 69999999999999888763 2567777777776666553 234689
Q ss_pred cceeeeccccccc
Q 037732 303 IEDLWLSYLEEQD 315 (350)
Q Consensus 303 L~~L~L~~n~l~~ 315 (350)
|+.|++++|.+++
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999998875
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.5e-19 Score=160.76 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=44.8
Q ss_pred CcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC---chhhhccCCCcEEEecCCCCc-cccccccCCCCccEEec
Q 037732 111 IQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD---ITVIRDLKKLAVLCLRGSDIK-RLPVEVGELTLLRLLDL 186 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~l 186 (350)
++++.|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 44444444444444333333444445555554444432 233444444555555444443 33334444444555554
Q ss_pred cCCCCCCc--cCcchhCCCCCCcEEEcCCC
Q 037732 187 RDCMELEV--IPPNILSNLSHLEELYMGPR 214 (350)
Q Consensus 187 ~~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 214 (350)
++|..+.. ++.. +.++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 44422221 2222 344444555554444
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=2.2e-19 Score=162.92 Aligned_cols=238 Identities=14% Similarity=0.064 Sum_probs=171.5
Q ss_pred cCCCCCccEEEecccCC---ccccccChHH------HhcCCcceEEeecCCcCcC-----CCccccCcccccEEEecCCC
Q 037732 80 VVECPQLELLFICADKE---SSSLTIPNKF------FERMIQVRVINFSYMNLLS-----LPSSLGLLSNLQNLSLYNCK 145 (350)
Q Consensus 80 ~~~~~~L~~L~l~~~~~---~~~~~~~~~~------~~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~ 145 (350)
+..+++|++|++ +.+ ...+.+|..+ +..+++|++|++++|.+.. +|..+..+++|++|++++|.
T Consensus 56 l~~~~~L~~L~L--s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEEC--CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeC--cccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 557899999999 443 2223445443 3578999999999999885 67788899999999999999
Q ss_pred CCC--chh----hhcc---------CCCcEEEecCCCCc--ccc---ccccCCCCccEEeccCCCCCC-----ccCcchh
Q 037732 146 LLD--ITV----IRDL---------KKLAVLCLRGSDIK--RLP---VEVGELTLLRLLDLRDCMELE-----VIPPNIL 200 (350)
Q Consensus 146 l~~--~~~----l~~l---------~~L~~L~l~~~~~~--~lp---~~l~~l~~L~~L~l~~~~~~~-----~~~~~~l 200 (350)
+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|++|++++|.... ..+.. +
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l 212 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-L 212 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-G
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-h
Confidence 865 333 4444 89999999999886 455 467789999999999964331 12223 7
Q ss_pred CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccccc--ccCcc
Q 037732 201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWE--YADIW 278 (350)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~~ 278 (350)
.++++|++|++++|.+.... ...++..+..+++|+.|++++|.+....... ++..+ ..+++
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--------------l~~~l~~~~~~~ 275 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGAAA--------------VVDAFSKLENIG 275 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHHHH--------------HHHHHHTCSSCC
T ss_pred hcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhHHH--------------HHHHHhhccCCC
Confidence 88999999999999873211 2456778899999999999999876431110 01122 23778
Q ss_pred ceEEEEeCCCccc-----chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeC
Q 037732 279 CREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRG 338 (350)
Q Consensus 279 L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~ 338 (350)
|+.|++++|.... +|..+...+++|+.|++++|.+++.......+. ..+++++.+++..
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~-~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR-EVFSTRGRGELDE 339 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH-HHHHHHTCCEECC
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH-HHhhhcCcchhhh
Confidence 9999999887766 777776667999999999999987422112221 3456666666544
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=8.9e-18 Score=161.81 Aligned_cols=245 Identities=14% Similarity=-0.010 Sum_probs=181.0
Q ss_pred CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC----chhhhccC
Q 037732 81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD----ITVIRDLK 156 (350)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~----~~~l~~l~ 156 (350)
.....++.|.+ ..+. ...++. ..+..++.+.+..+.....+. ...++.|++|++++|.+.. +.....+.
T Consensus 325 ~~~~~L~~L~l--~~~~-~~~~~~---~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 397 (635)
T 4g8a_A 325 SYNFGWQHLEL--VNCK-FGQFPT---LKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI 397 (635)
T ss_dssp GSCCCCSEEEE--ESCE-ESSCCC---CBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHHSCS
T ss_pred ccchhhhhhhc--cccc-ccCcCc---ccchhhhhcccccccCCCCcc-cccccccccchhhccccccccccccchhhhh
Confidence 34445566666 2222 222222 245566666666665544332 3467888999998887654 45667788
Q ss_pred CCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC
Q 037732 157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH 236 (350)
Q Consensus 157 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 236 (350)
+|+++++..+....++..+..+++|+.+++..++.....+...+..+.+++.++++.|.+ ....+..+..++.
T Consensus 398 ~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l-------~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-------RVAFNGIFNGLSS 470 (635)
T ss_dssp CCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC-------EECCTTTTTTCTT
T ss_pred hhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc-------ccccccccccchh
Confidence 899999888877777777888899999999886665555555578889999999998887 5566677888899
Q ss_pred CceeEEEecCCC--CCCccc-ccCCccEEEEEEcCc----ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732 237 LISLELQIQDVN--TFPRGL-FLEKLETFKILIGGV----WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS 309 (350)
Q Consensus 237 L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 309 (350)
++.|++++|... ..|..+ .+++|++|++..+.+ +..++.+++|+.|++++|....++...+..+++|+.|+|+
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 999999988642 245555 678999999976654 3357889999999999998888766545557999999999
Q ss_pred cccccchhhhhhhhcccCc-CcceEEEEeCcccee
Q 037732 310 YLEEQDVNYFVNELVKVGP-SQLKHLYIRGSHLTL 343 (350)
Q Consensus 310 ~n~l~~~~~~~~~l~~~~~-~~L~~L~l~~~~~~~ 343 (350)
+|++++. .|..+ ..+ ++|+.|+|++||+.|
T Consensus 551 ~N~l~~~--~~~~l--~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 551 LNHIMTS--KKQEL--QHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TSCCCBC--CSSCT--TCCCTTCCEEECTTCCBCC
T ss_pred CCcCCCC--CHHHH--HhhhCcCCEEEeeCCCCcc
Confidence 9999984 45556 556 689999999999987
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.9e-18 Score=155.37 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=48.1
Q ss_pred CccceEEEEeCCCcccchH-HH---HHHhcccceeeeccccccc-----hhhhhhhhcccCcCcceEEEEeCccceec
Q 037732 276 DIWCREFKIDLDSKIRLKD-GL---ILKLEGIEDLWLSYLEEQD-----VNYFVNELVKVGPSQLKHLYIRGSHLTLN 344 (350)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~-~~---~~~~~~L~~L~L~~n~l~~-----~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 344 (350)
+++|+.|++++|.....+. .+ ...+++|+.|++++|.+.. ...++..+ ..+++|+.|++++|++...
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCcCCCc
Confidence 4689999999987766443 22 2335899999999998433 22234445 6788999999999998764
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.6e-18 Score=161.39 Aligned_cols=172 Identities=24% Similarity=0.284 Sum_probs=98.4
Q ss_pred hcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEecc
Q 037732 108 ERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLR 187 (350)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~ 187 (350)
..+.+|+.|++++|.+..++ .+..+++|+.|++++|.+...+.+..+++|+.|++++|.+..+| .+..+++|++|+++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 35666777777777666665 36667777777777777666333666777777777777666655 56666666666666
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEc
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIG 267 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~ 267 (350)
+|. +..++. +..+++|+.|++++|.+... ..+..+++|+.|++++|.+..++.
T Consensus 118 ~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l---------~~l~~l~~L~~L~Ls~N~l~~~~~--------------- 170 (605)
T 1m9s_A 118 HNG-ISDING--LVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDNQISDIVP--------------- 170 (605)
T ss_dssp TSC-CCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGGSCTTCSEEECCSSCCCCCGG---------------
T ss_pred CCC-CCCCcc--ccCCCccCEEECCCCccCCc---------hhhcccCCCCEEECcCCcCCCchh---------------
Confidence 633 333433 56666666666666655321 335556666666666665544432
Q ss_pred CcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccc
Q 037732 268 GVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQD 315 (350)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 315 (350)
+..+++|+.|+|++|....++ .+. .+++|+.|+|++|.+..
T Consensus 171 -----l~~l~~L~~L~Ls~N~i~~l~-~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKNHISDLR-ALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----GTTCTTCCEEECCSSCCCBCG-GGT-TCTTCSEEECCSEEEEC
T ss_pred -----hccCCCCCEEECcCCCCCCCh-HHc-cCCCCCEEEccCCcCcC
Confidence 123344444444444444333 122 24555555555555544
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=1.9e-17 Score=156.22 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=139.5
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEE
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLC 162 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~ 162 (350)
.+++.|++ +.+. ...+|..+ +++|+.|++++|.++.+| ..+++|++|++++|.++. +. +.. +|++|+
T Consensus 59 ~~L~~L~L--s~n~-L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQL--NRLN-LSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEEC--CSSC-CSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CCccEEEe--CCCC-CCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 37888888 4443 44577653 367888888888888877 456888888888888887 44 544 888888
Q ss_pred ecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEE
Q 037732 163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLEL 242 (350)
Q Consensus 163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 242 (350)
+++|.++.+|. .+++|+.|++++| .+..+|. .+++|++|++++|.+.. +|. +. ++|+.|++
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~--------lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTF--------LPE-LP--ESLEALDV 187 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC--------CCC-CC--TTCCEEEC
T ss_pred CCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCC--------cch-hh--CCCCEEEC
Confidence 88888888876 6788888888884 4455665 46788888888887732 344 43 78888888
Q ss_pred EecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhh
Q 037732 243 QIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNE 322 (350)
Q Consensus 243 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 322 (350)
++|.+..+|. +. .+| ....+.|+.|++++|....+|..++. +++|+.|+|++|.+++. +|..
T Consensus 188 s~N~L~~lp~-~~-~~L-------------~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~--~p~~ 249 (571)
T 3cvr_A 188 STNLLESLPA-VP-VRN-------------HHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSR--IRES 249 (571)
T ss_dssp CSSCCSSCCC-CC----------------------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHH--HHHH
T ss_pred cCCCCCchhh-HH-Hhh-------------hcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCc--CHHH
Confidence 8888887776 31 111 11334569999999998899988877 79999999999999874 6666
Q ss_pred h
Q 037732 323 L 323 (350)
Q Consensus 323 l 323 (350)
+
T Consensus 250 l 250 (571)
T 3cvr_A 250 L 250 (571)
T ss_dssp H
T ss_pred H
Confidence 5
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.9e-17 Score=141.57 Aligned_cols=178 Identities=21% Similarity=0.246 Sum_probs=139.3
Q ss_pred ccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhh
Q 037732 73 QTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVI 152 (350)
Q Consensus 73 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l 152 (350)
.+..+.....+++|+.|++ +. +....++. +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.+
T Consensus 35 ~~~~~~~~~~l~~L~~L~l--~~-~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l 108 (291)
T 1h6t_A 35 SVTDAVTQNELNSIDQIIA--NN-SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSL 108 (291)
T ss_dssp CTTSEECHHHHHTCCEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGG
T ss_pred CcccccchhhcCcccEEEc--cC-CCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhh
Confidence 3344444456788999999 33 44555554 5678999999999999988776 88999999999999998887778
Q ss_pred hccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchh
Q 037732 153 RDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLH 232 (350)
Q Consensus 153 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 232 (350)
..+++|++|++++|.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+... +. +.
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~--------~~-l~ 175 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI--------VP-LA 175 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC--------GG-GT
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc--------hh-hc
Confidence 99999999999999888874 6888999999999985 4454543 78899999999998887432 22 78
Q ss_pred hcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCc
Q 037732 233 ELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGV 269 (350)
Q Consensus 233 ~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~ 269 (350)
.+++|+.|++++|.+..++....+++|+.|++..+.+
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred CCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 8899999999999988876532678888888866543
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=8.8e-19 Score=155.84 Aligned_cols=223 Identities=16% Similarity=0.147 Sum_probs=157.7
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhhhccCCCc
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLA 159 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~ 159 (350)
++++.|.+ ..+...+..+. ++ .+++|+.|++++|.+.. ++..+..+++|++|++++|.+.+ +..++.+++|+
T Consensus 70 ~~l~~L~l--~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRC--PRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEEC--TTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEc--CCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 67888888 44444333333 33 68899999999998763 77778889999999999998876 67788899999
Q ss_pred EEEecCC-CCc--cccccccCCCCccEEeccCCCCCCc--cCcchhCCCC-CCcEEEcCCCC--CCcchhhhccccccch
Q 037732 160 VLCLRGS-DIK--RLPVEVGELTLLRLLDLRDCMELEV--IPPNILSNLS-HLEELYMGPRS--FDKWEVEVEGVKNASL 231 (350)
Q Consensus 160 ~L~l~~~-~~~--~lp~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~l 231 (350)
+|++++| .++ .++..+..+++|++|++++|..+.. ++.. +..++ +|++|++++|. +. .+.++..+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~------~~~l~~~~ 218 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQ------KSDLSTLV 218 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSC------HHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCC------HHHHHHHH
Confidence 9999998 677 4676788899999999998734443 3443 67888 99999999884 32 13456677
Q ss_pred hhcCCCceeEEEecC-CC-CCCccc-ccCCccEEEEEEcC-ccc----ccccCccceEEEEeCCCcccchH-HHHHHhcc
Q 037732 232 HELKHLISLELQIQD-VN-TFPRGL-FLEKLETFKILIGG-VWG----WEYADIWCREFKIDLDSKIRLKD-GLILKLEG 302 (350)
Q Consensus 232 ~~l~~L~~L~l~~~~-~~-~l~~~~-~~~~L~~L~l~~~~-~~~----~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 302 (350)
..+++|+.|++++|. +. ..+..+ .+++|++|++..+. +.+ .++.+++|+.|+++++ ++. .+.....+
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~ 294 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEA 294 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHH
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhh
Confidence 888999999999988 44 344444 56777777776552 221 3667788888888876 222 23332245
Q ss_pred cceeeeccccccchhhhhhhh
Q 037732 303 IEDLWLSYLEEQDVNYFVNEL 323 (350)
Q Consensus 303 L~~L~L~~n~l~~~~~~~~~l 323 (350)
|+.|++++|.+++. .|..+
T Consensus 295 l~~L~l~~n~l~~~--~~~~~ 313 (336)
T 2ast_B 295 LPHLQINCSHFTTI--ARPTI 313 (336)
T ss_dssp STTSEESCCCSCCT--TCSSC
T ss_pred CcceEEecccCccc--cCCcc
Confidence 67777888888774 44444
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.1e-16 Score=134.52 Aligned_cols=170 Identities=22% Similarity=0.343 Sum_probs=100.0
Q ss_pred CccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCCcEE
Q 037732 85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVL 161 (350)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L 161 (350)
..+++++ .+.....+|..+ ..+++.|++++|.+..++ ..+..+++|++|++++|.+.. +..+..+++|++|
T Consensus 15 ~~~~l~~---~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDC---QGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEEC---TTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEec---CCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 3445555 333344555432 245666666666666533 346666667777776666665 3445666667777
Q ss_pred EecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732 162 CLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL 240 (350)
Q Consensus 162 ~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 240 (350)
++++|.+..+|. .+..+++|++|++++ +.+..++...+.++++|++|++++|.+. +..+..++.+++|+.|
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIPAGAFDKLTNLQTL 160 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEE
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCC-------ccCHHHcCcCcCCCEE
Confidence 776666665554 345666677777666 3444555544566666777777666652 2223356666667777
Q ss_pred EEEecCCCCCCccc--ccCCccEEEEEEcC
Q 037732 241 ELQIQDVNTFPRGL--FLEKLETFKILIGG 268 (350)
Q Consensus 241 ~l~~~~~~~l~~~~--~~~~L~~L~l~~~~ 268 (350)
++++|.+..++... .+++|+.|++..+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 77777666665533 45666666665443
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=2.8e-18 Score=154.28 Aligned_cols=225 Identities=14% Similarity=0.079 Sum_probs=156.5
Q ss_pred CCccEEEecccCCccccccCh----HHHhcCC-cceEEeecCCcCcC-CCccccCc-----ccccEEEecCCCCCC--ch
Q 037732 84 PQLELLFICADKESSSLTIPN----KFFERMI-QVRVINFSYMNLLS-LPSSLGLL-----SNLQNLSLYNCKLLD--IT 150 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~-lp~~l~~l-----~~L~~L~l~~~~l~~--~~ 150 (350)
++|++|++ +.+. ....+. ..+..++ +|++|++++|.+.. .+..+..+ ++|++|++++|.+.. +.
T Consensus 22 ~~L~~L~L--s~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDL--SLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCCEEEC--TTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCceEEEc--cCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 45999999 5544 455443 4456787 89999999999885 35555554 899999999999876 34
Q ss_pred h----hhcc-CCCcEEEecCCCCccccc-c----ccC-CCCccEEeccCCCCCC----ccCcchhCCCC-CCcEEEcCCC
Q 037732 151 V----IRDL-KKLAVLCLRGSDIKRLPV-E----VGE-LTLLRLLDLRDCMELE----VIPPNILSNLS-HLEELYMGPR 214 (350)
Q Consensus 151 ~----l~~l-~~L~~L~l~~~~~~~lp~-~----l~~-l~~L~~L~l~~~~~~~----~~~~~~l~~l~-~L~~L~l~~~ 214 (350)
. +..+ ++|++|++++|.+...+. . +.. .++|++|++++|.... .++.. +..++ +|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCC
Confidence 3 4444 899999999998885553 2 334 3699999999964432 23333 44555 8999999999
Q ss_pred CCCcchhhhccccccchhhc-CCCceeEEEecCCCC-----CCccc-c-cCCccEEEEEEcCccc--------ccccCcc
Q 037732 215 SFDKWEVEVEGVKNASLHEL-KHLISLELQIQDVNT-----FPRGL-F-LEKLETFKILIGGVWG--------WEYADIW 278 (350)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----l~~~~-~-~~~L~~L~l~~~~~~~--------~~~~~~~ 278 (350)
.+..... ..+...+..+ ++|+.|++++|.+.. ++..+ . .++|++|++..+.+.. .+..+++
T Consensus 178 ~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 178 NLASKNC---AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp CGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred CCchhhH---HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 8733221 1222344555 599999999999876 44444 2 3589999998766533 3567889
Q ss_pred ceEEEEeCCCcccchH--------HHHHHhcccceeeeccccccch
Q 037732 279 CREFKIDLDSKIRLKD--------GLILKLEGIEDLWLSYLEEQDV 316 (350)
Q Consensus 279 L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~L~~n~l~~~ 316 (350)
|+.|++++|....+.. .+. .+++|+.|++++|.+...
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEecCCCcCCCc
Confidence 9999999976333222 222 347899999999998763
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.8e-17 Score=140.95 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732 110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 189 (350)
Q Consensus 110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 189 (350)
+.++..++++++.++.++ .+..+++|++|++++|.+...+.+..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~- 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR- 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-
Confidence 344555555555555544 355556666666666665554455566666666666666665554 55666666666665
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 250 (350)
+.+..++. +.. ++|++|++++|.+... +.+..+++|+.|++++|.+..+
T Consensus 95 N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---------~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 95 NRLKNLNG--IPS-ACLSRLFLDNNELRDT---------DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp SCCSCCTT--CCC-SSCCEEECCSSCCSBS---------GGGTTCTTCCEEECTTSCCCBC
T ss_pred CccCCcCc--ccc-CcccEEEccCCccCCC---------hhhcCcccccEEECCCCcCCCC
Confidence 33333443 222 5566666666655221 1255555666666666555444
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-16 Score=130.52 Aligned_cols=132 Identities=21% Similarity=0.327 Sum_probs=78.9
Q ss_pred cCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcc-ccccccCCCCccEEecc
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR-LPVEVGELTLLRLLDLR 187 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~ 187 (350)
.+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.+.. .|..+..+++|++|+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4556666666666666555 466666666666666655555566666666666666666653 45556666666666666
Q ss_pred CCCCCCccCcchhCCCCCCcEEEcCCCC-CCcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732 188 DCMELEVIPPNILSNLSHLEELYMGPRS-FDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP 251 (350)
Q Consensus 188 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 251 (350)
+|......+.. ++++++|++|++++|. +. .++ .+..+++|+.|++++|.+..++
T Consensus 121 ~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~--------~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 121 HSAHDDSILTK-INTLPKVNSIDLSYNGAIT--------DIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp SSBCBGGGHHH-HTTCSSCCEEECCSCTBCC--------CCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred CCccCcHhHHH-HhhCCCCCEEEccCCCCcc--------ccH-hhcCCCCCCEEECCCCCCcChH
Confidence 64433333433 5666666666666665 32 222 3566666666666666665554
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.3e-16 Score=148.76 Aligned_cols=94 Identities=22% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCC
Q 037732 110 MIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDC 189 (350)
Q Consensus 110 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~ 189 (350)
+++|+.|++++|.++.+|. +.. +|++|++++|.++.++. .+++|++|++++|.++.+|. .+++|+.|++++|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence 4455555555555544444 332 45555555555444211 34455555555555554443 3445555555542
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
.+..+|. +. ++|+.|++++|.+
T Consensus 171 -~L~~lp~--l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 171 -QLTFLPE--LP--ESLEALDVSTNLL 192 (571)
T ss_dssp -CCSCCCC--CC--TTCCEEECCSSCC
T ss_pred -CCCCcch--hh--CCCCEEECcCCCC
Confidence 2333443 22 4455555555544
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.1e-16 Score=129.62 Aligned_cols=172 Identities=20% Similarity=0.261 Sum_probs=109.6
Q ss_pred EEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCC
Q 037732 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCME 191 (350)
Q Consensus 115 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~ 191 (350)
.++.+++.+..+|..+ .++|++|++++|.+.. + ..+..+++|++|++++|.+..+|.. +..+++|++|++++| .
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence 4555555555555543 3467777777777666 2 3456677777777777777666653 466777777777773 3
Q ss_pred CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCccc
Q 037732 192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWG 271 (350)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 271 (350)
+..++...+.++++|++|++++|.+. +..+..+..+++|+.|++++|.+..++...
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------------- 143 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQ-------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGV----------------- 143 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTT-----------------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCc-------ccCHhHhccCCcCCEEECCCCccceeCHHH-----------------
Confidence 44555544567777777777777663 233344677777888888777776665542
Q ss_pred ccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhhhhh
Q 037732 272 WEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNEL 323 (350)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 323 (350)
+..+++|+.|++++|.... .+++|+.|++..|.+++. +|..+
T Consensus 144 -~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~--ip~~~ 185 (208)
T 2o6s_A 144 -FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV--VRNSA 185 (208)
T ss_dssp -TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT--BBCTT
T ss_pred -hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce--eeccC
Confidence 2345566666666654322 246788888888888874 77666
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=7.9e-17 Score=144.06 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=120.9
Q ss_pred ccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-c--hhhhccCCCcE-EEecCCCCccccc
Q 037732 99 SLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-I--TVIRDLKKLAV-LCLRGSDIKRLPV 173 (350)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~--~~l~~l~~L~~-L~l~~~~~~~lp~ 173 (350)
..++|..+ .++++.|++++|.++.+|. .|.++++|++|++++|.+.+ + ..+.+++++.. +.+.+|++..++.
T Consensus 21 Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 21 VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 44555433 2456666666666666554 45666666666666666544 1 34555666554 3444556665543
Q ss_pred -cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCC-CCCcchhhhccccccchhhcC-CCceeEEEecCCCCC
Q 037732 174 -EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR-SFDKWEVEVEGVKNASLHELK-HLISLELQIQDVNTF 250 (350)
Q Consensus 174 -~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l 250 (350)
.+..+++|++|++++ +.+..++.........+..|++.++ .+.. ..+..+..+. .++.|++++|.+..+
T Consensus 98 ~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-------l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHT-------IERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCE-------ECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred hhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccc-------ccccchhhcchhhhhhccccccccCC
Confidence 456666666666666 3344444322334445555655443 2211 1112233332 466666666666666
Q ss_pred Cccc-ccCCccEEEEEEcC----cc-cccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccc-cccchhhhhhhh
Q 037732 251 PRGL-FLEKLETFKILIGG----VW-GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYL-EEQDVNYFVNEL 323 (350)
Q Consensus 251 ~~~~-~~~~L~~L~l~~~~----~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l 323 (350)
+... ...+|+.+.+..+. ++ ..++.+++|+.|++++|....+|.+. +.+|+.|.+.++ .++. +| .+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~---lP-~l 242 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK---LP-TL 242 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC---CC-CT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc---CC-Cc
Confidence 6554 34455555553221 22 14567778888888888777777543 345555555432 3444 54 24
Q ss_pred cccCcCcceEEEEeC
Q 037732 324 VKVGPSQLKHLYIRG 338 (350)
Q Consensus 324 ~~~~~~~L~~L~l~~ 338 (350)
..+++|+.+++.+
T Consensus 243 --~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 --EKLVALMEASLTY 255 (350)
T ss_dssp --TTCCSCCEEECSC
T ss_pred --hhCcChhhCcCCC
Confidence 6678888888765
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.2e-16 Score=150.39 Aligned_cols=166 Identities=22% Similarity=0.278 Sum_probs=84.2
Q ss_pred CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCchhhhccCCCcE
Q 037732 81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAV 160 (350)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~ 160 (350)
..+++|+.|.+ .+.....++. +..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.+..+++|+.
T Consensus 40 ~~L~~L~~L~l---~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIA---NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBC---TTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCE
T ss_pred hcCCCCCEEEC---cCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCE
Confidence 34445555555 2222333332 3455555555555555555444 5555555555555555555445555555555
Q ss_pred EEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732 161 LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL 240 (350)
Q Consensus 161 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 240 (350)
|++++|.+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+. +..+ +..+++|+.|
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~-------~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------DIVP--LAGLTKLQNL 180 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC-------CCGG--GTTCTTCCEE
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC-------Cchh--hccCCCCCEE
Confidence 555555555543 35555555555555532 233322 455555555555555542 1111 5555555555
Q ss_pred EEEecCCCCCCcccccCCccEEEEE
Q 037732 241 ELQIQDVNTFPRGLFLEKLETFKIL 265 (350)
Q Consensus 241 ~l~~~~~~~l~~~~~~~~L~~L~l~ 265 (350)
++++|.+..++....+++|+.|++.
T Consensus 181 ~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 181 YLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred ECcCCCCCCChHHccCCCCCEEEcc
Confidence 5555555554321144555555543
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=7.2e-17 Score=154.44 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=35.7
Q ss_pred CccceEEEEeCCCccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCcccee
Q 037732 276 DIWCREFKIDLDSKIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 276 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
+++|+.|+++++.... ....+...+++|+.|+|++|.+++. .++..+ ..+++|+.|++++|+++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AIAAAV--TKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-HHHHHH--HHCSSCCEEEEESCBCCT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-HHHHHH--HhcCccCeeECcCCcCCH
Confidence 5566666666654332 1112223356677777776666432 233333 456777777777777654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=5.5e-16 Score=126.96 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=125.2
Q ss_pred CCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732 81 VECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL 158 (350)
Q Consensus 81 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L 158 (350)
..+++++.|++ +.+ ....++. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++. +..++.+++|
T Consensus 41 ~~l~~L~~L~l--~~n-~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITL--ANI-NVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEE--ESS-CCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEec--cCC-CccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 45678999999 444 4456663 568999999999999776554 68899999999999999986 7889999999
Q ss_pred cEEEecCCCCcc-ccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCC
Q 037732 159 AVLCLRGSDIKR-LPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHL 237 (350)
Q Consensus 159 ~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 237 (350)
++|++++|.+.. .|..+..+++|++|++++|..+..++. +..+++|++|++++|.+.. ++ .+..+++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------~~-~l~~l~~L 183 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------YR-GIEDFPKL 183 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------CT-TGGGCSSC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------hH-HhccCCCC
Confidence 999999999984 677899999999999999765777774 7999999999999998843 22 58889999
Q ss_pred ceeEEEecCCCC
Q 037732 238 ISLELQIQDVNT 249 (350)
Q Consensus 238 ~~L~l~~~~~~~ 249 (350)
+.|++++|.++.
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999998753
No 103
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=3.8e-16 Score=149.39 Aligned_cols=250 Identities=13% Similarity=0.071 Sum_probs=158.2
Q ss_pred CCCCccEEEecccCCccc----cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEec---------------
Q 037732 82 ECPQLELLFICADKESSS----LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLY--------------- 142 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~--------------- 142 (350)
.+++|++|++ +.+... ..+ ..++..+++|+.|++++|.+..+|..+..+++|++|+++
T Consensus 190 ~~~~L~~L~L--~~n~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNF--YMTEFAKISPKDL-ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEEC--TTCCCSSCCHHHH-HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEe--eccCCCccCHHHH-HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 4677777777 333332 112 223446777777777777665555545555555555554
Q ss_pred ------------CCCCCC-chhhhccCCCcEEEecCCCCc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCc
Q 037732 143 ------------NCKLLD-ITVIRDLKKLAVLCLRGSDIK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLE 207 (350)
Q Consensus 143 ------------~~~l~~-~~~l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 207 (350)
++.... +..+..+++|++|++++|.+. .++..+..+++|++|++++ .........+...+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence 332223 455667889999999998865 3334467899999999984 322222223246788899
Q ss_pred EEEcCC----------CCCCcchhhhccccccchhhcCCCceeEEEecCCCCC-Cccc--ccCCccEEEEEEcC----cc
Q 037732 208 ELYMGP----------RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF-PRGL--FLEKLETFKILIGG----VW 270 (350)
Q Consensus 208 ~L~l~~----------~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~--~~~~L~~L~l~~~~----~~ 270 (350)
+|++++ +.... ...+......+++|+.|+++.+.+..- +..+ .+++|++|++.... +.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVS-----QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCC-----HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred EEEeecCccccccccccCccC-----HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 999983 32211 112233356688999999988776531 2222 27889999996422 21
Q ss_pred ---------cccccCccceEEEEeCCC---cccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeC
Q 037732 271 ---------GWEYADIWCREFKIDLDS---KIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRG 338 (350)
Q Consensus 271 ---------~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~ 338 (350)
..+..+++|++|+++.+. .......+...+++|+.|+|++|.+++. .++..+ ..+++|++|+|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRG 497 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEES
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccC
Confidence 125568899999997532 2233445555578899999999888763 345555 6789999999999
Q ss_pred cccee
Q 037732 339 SHLTL 343 (350)
Q Consensus 339 ~~~~~ 343 (350)
|+++.
T Consensus 498 n~l~~ 502 (592)
T 3ogk_B 498 CCFSE 502 (592)
T ss_dssp CCCBH
T ss_pred CCCcH
Confidence 98653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.1e-15 Score=137.25 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=63.8
Q ss_pred EEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhh-ccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCC
Q 037732 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIR-DLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCM 190 (350)
Q Consensus 115 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~-~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~ 190 (350)
.++++++.+..+|..+. ..++.|++++|.++. + ..+. .+++|++|++++|.+..++. .+..+++|++|++++ +
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-N 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-C
Confidence 44555555555544332 234555555555544 2 2233 45555555555555554443 345555555555555 2
Q ss_pred CCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732 191 ELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG 253 (350)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 253 (350)
.+..++...+.++++|++|++++|.+ ....+..+.++++|+.|++++|.+..+|..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHI-------VVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcc-------cEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 33444443345555555555555555 222334455555555555555555555444
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1e-15 Score=131.10 Aligned_cols=161 Identities=21% Similarity=0.260 Sum_probs=104.2
Q ss_pred ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCCch
Q 037732 71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLDIT 150 (350)
Q Consensus 71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~ 150 (350)
...+..++.+..+++|+.|++ +. +....++. +..+++|+.|++++|.+..++. +..+++|++|++++|.++..+
T Consensus 28 ~~~i~~~~~~~~l~~L~~L~l--~~-n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 28 KQSVTDLVSQKELSGVQNFNG--DN-SNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp CSCTTSEECHHHHTTCSEEEC--TT-SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred CCCcccccchhhcCcCcEEEC--cC-CCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC
Confidence 334445555556677777777 33 33445552 4567777777777777776665 777777777777777776633
Q ss_pred hhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccc
Q 037732 151 VIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNAS 230 (350)
Q Consensus 151 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 230 (350)
.+.. ++|++|++++|.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+.. . ..
T Consensus 102 ~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-------~--~~ 167 (263)
T 1xeu_A 102 GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-------T--GG 167 (263)
T ss_dssp TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-------C--TT
T ss_pred cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-------h--HH
Confidence 3333 77777777777777665 4677777777777773 3444543 5677777777777776632 1 44
Q ss_pred hhhcCCCceeEEEecCCCCCC
Q 037732 231 LHELKHLISLELQIQDVNTFP 251 (350)
Q Consensus 231 l~~l~~L~~L~l~~~~~~~l~ 251 (350)
+..+++|+.|++++|.+...|
T Consensus 168 l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp STTCCCCCEEEEEEEEEECCC
T ss_pred hccCCCCCEEeCCCCcccCCc
Confidence 666777777777777665444
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=5.8e-16 Score=129.09 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=83.0
Q ss_pred cEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCC
Q 037732 137 QNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPR 214 (350)
Q Consensus 137 ~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (350)
+.++.+++.++. |..+. ++++.|++++|.+..++. .+..+++|+.|++++| .+..+++..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666655 44332 566666776666665554 4566666666666663 333332222566666666666666
Q ss_pred CCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccchH
Q 037732 215 SFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRLKD 294 (350)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 294 (350)
.+.. ..+..+.++++|+.|++++|.+..++.. .+..+++|+.|++++|....++.
T Consensus 91 ~l~~-------l~~~~f~~l~~L~~L~L~~N~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 91 KITE-------LPKSLFEGLFSLQLLLLNANKINCLRVD------------------AFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCC-------CCTTTTTTCTTCCEEECCSSCCCCCCTT------------------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCc-------cCHhHccCCCCCCEEECCCCCCCEeCHH------------------HcCCCCCCCEEECCCCcCCEECH
Confidence 6522 2223355566666666666666555333 23345566666666665555554
Q ss_pred HHHHHhcccceeeeccccc
Q 037732 295 GLILKLEGIEDLWLSYLEE 313 (350)
Q Consensus 295 ~~~~~~~~L~~L~L~~n~l 313 (350)
..+..+++|+.|+|++|.+
T Consensus 146 ~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTTCTTCCEEECCSSCE
T ss_pred HHHhCCCCCCEEEeCCCCc
Confidence 3333346666666666654
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=6.5e-16 Score=138.11 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=160.0
Q ss_pred eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCc-cccc-cccCCCCccEEeccCC
Q 037732 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIK-RLPV-EVGELTLLRLLDLRDC 189 (350)
Q Consensus 114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~-~lp~-~l~~l~~L~~L~l~~~ 189 (350)
++++-+++.++.+|..+ ..++++|++++|+++. + ..+..+++|++|++++|.+. .+|. .+.++++++.+....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777888888899876 3689999999999988 4 46899999999999999875 5665 4678888887666555
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEe-cCCCCCCccc--c-cCCccEEEEE
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQI-QDVNTFPRGL--F-LEKLETFKIL 265 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~~~--~-~~~L~~L~l~ 265 (350)
+.+..+++..+..+++|++|++++|.+... .+..+.....+..+++.. +.+..++... . ...++.|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHL-------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSC-------CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred CcccccCchhhhhccccccccccccccccC-------Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 777888776689999999999999888432 233445556677888865 4566666543 2 2467788887
Q ss_pred EcCccc---ccccCccceEEEEeC-CCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCc-c
Q 037732 266 IGGVWG---WEYADIWCREFKIDL-DSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGS-H 340 (350)
Q Consensus 266 ~~~~~~---~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~-~ 340 (350)
.+.+.. ......+|+.+.+.+ +....+|...+..+++|+.|++++|.++. +|. ..+.+|+.|++.++ .
T Consensus 163 ~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~---lp~----~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS---LPS----YGLENLKKLRARSTYN 235 (350)
T ss_dssp SSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC---CCS----SSCTTCCEEECTTCTT
T ss_pred cccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc---cCh----hhhccchHhhhccCCC
Confidence 665432 233456788888875 77888887665567999999999999987 553 34677888876664 4
Q ss_pred ceeccC
Q 037732 341 LTLNPA 346 (350)
Q Consensus 341 ~~~~p~ 346 (350)
+..+|+
T Consensus 236 l~~lP~ 241 (350)
T 4ay9_X 236 LKKLPT 241 (350)
T ss_dssp CCCCCC
T ss_pred cCcCCC
Confidence 666665
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=7.6e-16 Score=138.26 Aligned_cols=176 Identities=20% Similarity=0.155 Sum_probs=118.1
Q ss_pred ccEEEecCCCCCC-chhhhccCCCcEEEecCCCCcccccc-cc-CCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732 136 LQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVE-VG-ELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212 (350)
Q Consensus 136 L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~-l~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (350)
-+.++++++.+.. |..+. ..++.|++++|.+..++.. +. .+++|+.|++++ +.+..++...+.++++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECC
Confidence 4688999988888 55443 4689999999999988765 44 899999999998 55666665558899999999999
Q ss_pred CCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccc
Q 037732 213 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRL 292 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 292 (350)
+|.+. ...+..+.++++|+.|++++|.+..++... +..+++|+.|++++|....+
T Consensus 97 ~N~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~------------------~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 97 SNHLH-------TLDEFLFSDLQALEVLLLYNNHIVVVDRNA------------------FEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCC-------EECTTTTTTCTTCCEEECCSSCCCEECTTT------------------TTTCTTCCEEECCSSCCCSC
T ss_pred CCcCC-------cCCHHHhCCCcCCCEEECCCCcccEECHHH------------------hCCcccCCEEECCCCcCCee
Confidence 99883 334456888999999999999987764432 23444555555555555555
Q ss_pred hHHHH---HHhcccceeeeccccccchhhhhhhhcccCcCc--ceEEEEeCcccee
Q 037732 293 KDGLI---LKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQ--LKHLYIRGSHLTL 343 (350)
Q Consensus 293 ~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~--L~~L~l~~~~~~~ 343 (350)
|...+ ..+++|+.|+|++|.++.+ -+..+ ..++. |+.|++.+|++.+
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~--~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKL--PLTDL--QKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCC--CHHHH--HHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCcc--CHHHh--hhccHhhcceEEecCCCccC
Confidence 44332 2345666666666665552 11223 33444 3556666665553
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=5e-15 Score=123.35 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=70.2
Q ss_pred EEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCC
Q 037732 115 VINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCME 191 (350)
Q Consensus 115 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~ 191 (350)
.++.+++.++.+|..+. ++++.|++++|.+.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence 45555555555554432 455555555555555 23455555566666655555544 34455556666666655 33
Q ss_pred CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732 192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG 253 (350)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 253 (350)
+..+|...+.++++|++|++++|.+ .+..+..+..+++|+.|++++|.+..++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCC-------CEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 4445554445566666666666655 233344555666666666666666555443
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.6e-15 Score=123.13 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=104.7
Q ss_pred ccccccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc-ccCcccccEEEecCCCCCC-
Q 037732 71 EEQTNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS-LGLLSNLQNLSLYNCKLLD- 148 (350)
Q Consensus 71 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~l~~- 148 (350)
...+..+|. .-.+++++|++ +.+ ....++...+..+++|++|++++|.+..+|.. +..+++|++|++++|.++.
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l--~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 16 SQGRTSVPT-GIPAQTTYLDL--ETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp SSCCSSCCS-CCCTTCSEEEC--CSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCCCC-CCCCCCcEEEc--CCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence 334444543 22357777777 333 34455555556777788888877777765543 5677778888887777776
Q ss_pred c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccc
Q 037732 149 I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGV 226 (350)
Q Consensus 149 ~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 226 (350)
+ ..+..+++|++|++++|.+..++.. +..+++|++|++++| .+..++...+.++++|++|++++|.+
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~---------- 160 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW---------- 160 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB----------
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe----------
Confidence 3 3457777788888777777766654 567777777777774 44455555467777777777777765
Q ss_pred cccchhhcCCCceeEEEecCCC-CCCcc
Q 037732 227 KNASLHELKHLISLELQIQDVN-TFPRG 253 (350)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~~~~~-~l~~~ 253 (350)
.+.+++|+.|+++.|.+. .+|..
T Consensus 161 ----~~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 161 ----DCTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ----CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ----ecCCCCHHHHHHHHHhCCceeecc
Confidence 223445666666666543 44443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=1.7e-14 Score=121.00 Aligned_cols=130 Identities=28% Similarity=0.423 Sum_probs=82.3
Q ss_pred ceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCC
Q 037732 113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC 189 (350)
Q Consensus 113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~ 189 (350)
-+.++.+++.+..+|..+. ++|++|++++|.+.. +..+..+++|++|++++|.+..+|.. +..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~- 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT- 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-
Confidence 3456666666666665443 566777777776666 35566667777777777766666643 46667777777766
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG 253 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 253 (350)
+.+..++...+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+..++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT--------ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--------SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc--------ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 3444555544566777777777776662 4455566677777777777776666544
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=125.68 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=105.2
Q ss_pred ccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732 136 LQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212 (350)
Q Consensus 136 L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (350)
-+.++++++.++. |..+. ..+++|++++|.+..++. .+..+++|++|++++ +.+..++...+.++++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECC
Confidence 3578888888877 54442 456788888888887743 377888888888888 44555665447888888888888
Q ss_pred CCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcccccCCccEEEEEEcCcccccccCccceEEEEeCCCcccc
Q 037732 213 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRGLFLEKLETFKILIGGVWGWEYADIWCREFKIDLDSKIRL 292 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 292 (350)
+|.+ .+..+..+..+++|+.|++++|.+..++.. .+..+++|+.|++++|....+
T Consensus 90 ~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 90 SNRL-------ENVQHKMFKGLESLKTLMLRSNRITCVGND------------------SFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp SSCC-------CCCCGGGGTTCSSCCEEECTTSCCCCBCTT------------------SSTTCTTCSEEECTTSCCCCB
T ss_pred CCcc-------CccCHhHhcCCcCCCEEECCCCcCCeECHh------------------HcCCCccCCEEECCCCcCCEE
Confidence 8887 344455677888888888888887766443 234566677777777666665
Q ss_pred hHHHHHHhcccceeeecccccc
Q 037732 293 KDGLILKLEGIEDLWLSYLEEQ 314 (350)
Q Consensus 293 ~~~~~~~~~~L~~L~L~~n~l~ 314 (350)
+...+..+++|+.|++++|.+.
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEE
T ss_pred CHHHhcCCCCCCEEEecCcCCc
Confidence 3322233577777777777664
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=4.5e-15 Score=118.26 Aligned_cols=139 Identities=22% Similarity=0.196 Sum_probs=92.3
Q ss_pred CCcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcc-ccccccCCCCccEEec
Q 037732 110 MIQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR-LPVEVGELTLLRLLDL 186 (350)
Q Consensus 110 l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l 186 (350)
.++++.|++++|.+. .+|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 466777777777776 5666667777777777777776666666677777777777777775 5555566777777777
Q ss_pred cCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732 187 RDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG 253 (350)
Q Consensus 187 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 253 (350)
++| .+..++. ..+..+++|++|++++|.+...+. .....+..+++|+.|+++.|...++|..
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 774 3444431 226777778888887776632110 0013567777888888888877766654
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=6.5e-16 Score=147.81 Aligned_cols=64 Identities=5% Similarity=0.047 Sum_probs=39.8
Q ss_pred CccceEEEEeCCCccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccce
Q 037732 276 DIWCREFKIDLDSKIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLT 342 (350)
Q Consensus 276 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 342 (350)
+++|+.|+++++.... ....+...+++|+.|+|++|.+++. .+...+ ..+++|+.|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~--~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-ALLANA--SKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-HHHHTG--GGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-HHHHHH--HhCCCCCEEeeeCCCCC
Confidence 6677777777765422 2223334467888888887777442 222233 45788888888888763
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=121.32 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=82.7
Q ss_pred cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC--ccccCcccccEEEecCCCCCC--chhhhccCCCcEEE
Q 037732 87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP--SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLC 162 (350)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~ 162 (350)
+++++ .++....+|..+ ...++.|++++|.++.++ ..|..+++|++|++++|.++. +..+..+++|++|+
T Consensus 14 ~~l~~---s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDC---SNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEEC---CSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEe---CCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 34555 233344455432 234556666666666542 235666666666666666665 23566666666666
Q ss_pred ecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732 163 LRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE 241 (350)
Q Consensus 163 l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 241 (350)
+++|.+..++.. +..+++|+.|++++|. +..+++..+.++++|++|++++|.+ .+..|..+..+++|+.|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQI-------TTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCC-------CCBCTTTTTTCTTCCEEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcC-------CEECHHHhcCCCCCCEEE
Confidence 666666655543 5566666666666633 3333322256666666666666665 333345566666666666
Q ss_pred EEecCC
Q 037732 242 LQIQDV 247 (350)
Q Consensus 242 l~~~~~ 247 (350)
+++|.+
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 666654
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=5.8e-16 Score=148.19 Aligned_cols=249 Identities=15% Similarity=0.083 Sum_probs=123.9
Q ss_pred CCCccEEEecccCCccccccChHHHhcCCcceEEeecCC-cCcC--CCccccCcccccEEEecCCCCCC--chhhh----
Q 037732 83 CPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYM-NLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVIR---- 153 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l~---- 153 (350)
+++|++|++ +.+......+..+...+++|+.|++++| .+.. ++..+..+++|++|++++|.+++ +..+.
T Consensus 104 ~~~L~~L~L--~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRL--KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEE--ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEe--eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 445555555 3333322233333334555555555555 2322 33323345555555555555433 22222
Q ss_pred ccCCCcEEEecCCC--Cc--cccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC------------
Q 037732 154 DLKKLAVLCLRGSD--IK--RLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD------------ 217 (350)
Q Consensus 154 ~l~~L~~L~l~~~~--~~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------ 217 (350)
.+++|+.|++++|. +. .++..+..+++|++|++++|.....++.. +.++++|++|+++.+...
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence 33455555555543 11 12222233455555555554333333332 344555555554332110
Q ss_pred -----------cchhhhccccccchhhcCCCceeEEEecCCCC--CCccc-ccCCccEEEEEEcC----cccccccCccc
Q 037732 218 -----------KWEVEVEGVKNASLHELKHLISLELQIQDVNT--FPRGL-FLEKLETFKILIGG----VWGWEYADIWC 279 (350)
Q Consensus 218 -----------~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~L 279 (350)
.......+.++..+..+++|+.|++++|.+.. ++..+ .+++|++|++..+- ...+...+++|
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCC
Confidence 00000012344445567888888888887542 11112 46888888887651 11123457889
Q ss_pred eEEEEeC---------CCccc-chHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEe
Q 037732 280 REFKIDL---------DSKIR-LKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIR 337 (350)
Q Consensus 280 ~~L~l~~---------~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~ 337 (350)
+.|++.+ +.... ....+...+++|+.|.+++|.+++. ....+. ..+++|+.|++.
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~--~~~~l~-~~~~~L~~L~L~ 405 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA--ALITIA-RNRPNMTRFRLC 405 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH--HHHHHH-HHCTTCCEEEEE
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH--HHHHHH-hhCCCcceeEee
Confidence 9998843 12111 1223444578999998888888763 233331 357999999999
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.9e-14 Score=119.54 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=70.9
Q ss_pred CcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEec
Q 037732 111 IQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDL 186 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l 186 (350)
++|+.|++++|.+..+ |..|..+++|++|++++|.+.. + ..+..+++|++|++++|.++.++.. +..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5556666666665543 4445556666666666666555 2 3345566666666666666555543 355566666666
Q ss_pred cCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732 187 RDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 248 (350)
Q Consensus 187 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 248 (350)
++ +.+..+|.. +.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 120 s~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CC-NKLTELPRG-IERLTHLTHLALDQNQLKS-------IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CS-SCCCSCCTT-GGGCTTCSEEECCSSCCCC-------CCTTTTTTCTTCCEEECTTSCBC
T ss_pred cC-CcccccCcc-cccCCCCCEEECCCCcCCc-------cCHHHHhCCCCCCEEEeeCCCcc
Confidence 55 334455554 4556666666666655521 22234555566666666666543
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=2.7e-14 Score=111.31 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=67.1
Q ss_pred CcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCcc-ccccccCCCCccEEecc
Q 037732 111 IQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKR-LPVEVGELTLLRLLDLR 187 (350)
Q Consensus 111 ~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~ 187 (350)
++++.|++++|.+. .+|..+..+++|++|++++|.+.....++.+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 45556666666555 4555555566666666666655555555556666666666665554 44444556666666666
Q ss_pred CCCCCCccC--cchhCCCCCCcEEEcCCCCCCcchhhhccccc---cchhhcCCCceeEE
Q 037732 188 DCMELEVIP--PNILSNLSHLEELYMGPRSFDKWEVEVEGVKN---ASLHELKHLISLEL 242 (350)
Q Consensus 188 ~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l 242 (350)
+|. +..++ .. ++.+++|++|++++|.+. +..+ ..+..+++|+.|++
T Consensus 97 ~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNK-IKDLSTIEP-LKKLENLKSLDLFNCEVT-------NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSC-CCSHHHHGG-GGGCTTCCEEECTTCGGG-------GSTTHHHHHHHHCTTCCEETT
T ss_pred CCc-CCChHHHHH-HhhCCCCCEEeCcCCccc-------chHHHHHHHHHHCCCcccccC
Confidence 533 33322 22 555666666666666552 1111 24555666666554
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=1.1e-13 Score=110.14 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=110.5
Q ss_pred CCCCccEEEecccCCccc-cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732 82 ECPQLELLFICADKESSS-LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL 158 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L 158 (350)
..++++.|++ +.+... +.+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +..+..+++|
T Consensus 22 ~~~~L~~L~l--~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVL--DNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEEC--CSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEEC--CCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3478999999 555543 367765 46899999999999999887 778999999999999999988 4556679999
Q ss_pred cEEEecCCCCcccc--ccccCCCCccEEeccCCCCCCccCc---chhCCCCCCcEEEcCCCCCCcc
Q 037732 159 AVLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMGPRSFDKW 219 (350)
Q Consensus 159 ~~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~ 219 (350)
++|++++|.+..+| ..+..+++|++|++++| .+..++. ..+..+++|++|++++|.....
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999999877 68899999999999995 4555565 3489999999999998887543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=7.2e-16 Score=145.97 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=53.0
Q ss_pred ccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCC
Q 037732 136 LQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRS 215 (350)
Q Consensus 136 L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (350)
|++|++++|.++.++.++.+++|+.|++++|.+..+|..++.+++|+.|++++| .+..+| . ++++++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCC
Confidence 445555555555522255555555555555555555555555555555555552 233344 2 4555555555555555
Q ss_pred CCcchhhhcccc-ccchhhcCCCceeEEEecCCCCCCc
Q 037732 216 FDKWEVEVEGVK-NASLHELKHLISLELQIQDVNTFPR 252 (350)
Q Consensus 216 ~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~ 252 (350)
+ .+.. |..++.+++|+.|++++|.+..+|+
T Consensus 520 l-------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 520 L-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-------CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-------CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 4 2222 4445555555555555555544433
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=3.4e-14 Score=138.49 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=75.4
Q ss_pred cCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchh
Q 037732 122 NLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNIL 200 (350)
Q Consensus 122 ~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l 200 (350)
.+...+..+..+..|+.|++++|.+.. +..+..+++|++|++++|.+..+|..++++++|++|++++|. +..+|.. +
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~ 289 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-L 289 (727)
T ss_dssp ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-G
T ss_pred ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-h
Confidence 333345566677777777777777766 566667777777777777777777777777777777777743 4466666 5
Q ss_pred CCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC
Q 037732 201 SNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 249 (350)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (350)
+++++|++|++++|.+. .+|..++++++|+.|++++|.+..
T Consensus 290 ~~l~~L~~L~L~~N~l~--------~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT--------TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGGTTCSEEECCSSCCC--------CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred cCCCCCCEEECCCCCCC--------ccChhhhcCCCccEEeCCCCccCC
Confidence 67777777777777652 445567777777777777776654
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.7e-13 Score=111.56 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=64.6
Q ss_pred eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-ch--hhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCC
Q 037732 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-IT--VIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDC 189 (350)
Q Consensus 114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~ 189 (350)
+.++++++.++.+|..+.. ++++|++++|.+.. ++ .++.+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455555555555554332 55555555555555 22 255555555555555555544 334555555555555552
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV 247 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 247 (350)
.+..++...+.++++|++|++++|.+ .+..|..+..+++|+.|++++|.+
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCC-------CEECTTSSTTCTTCCEEECTTCCB
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCc
Confidence 23333333245555666666665555 333344555555566666655554
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=2.5e-14 Score=139.44 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=112.4
Q ss_pred cChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCC
Q 037732 102 IPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTL 180 (350)
Q Consensus 102 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~ 180 (350)
++...+..+..|+.|++++|.+..+|..+..+++|++|+|++|.++. |..++.+++|++|++++|.++.+|..++.+++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 34444668999999999999999999988899999999999999988 78899999999999999999999999999999
Q ss_pred ccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCC-CceeEEEecCCC
Q 037732 181 LRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKH-LISLELQIQDVN 248 (350)
Q Consensus 181 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~ 248 (350)
|++|++++| .+..+|.. ++++++|++|++++|.+ .+..|..+..+.. +..+++..|.+.
T Consensus 295 L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l-------~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL-------EKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC-------CSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc-------CCCChHHHhhcchhhhHHhhccCccc
Confidence 999999994 56788988 89999999999999998 4444555544321 223566677654
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1e-13 Score=111.26 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=62.0
Q ss_pred cCCcceEEeecCCcCcCCCccccCcc-cccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccc-cCCCCccEEec
Q 037732 109 RMIQVRVINFSYMNLLSLPSSLGLLS-NLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEV-GELTLLRLLDL 186 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~l 186 (350)
.+.+|+.|++++|.+..+|. +..+. +|++|++++|.++.++.+..+++|++|++++|.+..+|..+ ..+++|++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 34455555555555544433 22332 55555555555444444445555555555555555554433 45555555555
Q ss_pred cCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC
Q 037732 187 RDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD 246 (350)
Q Consensus 187 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 246 (350)
++| .+..+|. ..+..+++|++|++++|.+...+. .....+..+++|+.|+++.|.
T Consensus 96 ~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~----~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKH----YRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT----HHHHHHHHCTTCSEETTEECC
T ss_pred CCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHh----HHHHHHHHCCccceeCCCcCC
Confidence 552 2333443 114455555555555555421110 000125555566666655554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.4e-13 Score=110.40 Aligned_cols=137 Identities=16% Similarity=0.112 Sum_probs=110.8
Q ss_pred cccccccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chh-
Q 037732 74 TNLLLEVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITV- 151 (350)
Q Consensus 74 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~- 151 (350)
+...+....+++++.|++ +.+ ....++. +....++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++.
T Consensus 9 i~~~~~~~~~~~L~~L~l--~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 9 IEQAAQYTNAVRDRELDL--RGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp HHTSCEEECTTSCEEEEC--TTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HHHHHhcCCcCCceEEEe--eCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 334455667889999999 444 4455654 333345999999999999887 678999999999999999988 544
Q ss_pred hhccCCCcEEEecCCCCccccc--cccCCCCccEEeccCCCCCCccCcc---hhCCCCCCcEEEcCCCCC
Q 037732 152 IRDLKKLAVLCLRGSDIKRLPV--EVGELTLLRLLDLRDCMELEVIPPN---ILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 152 l~~l~~L~~L~l~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~ 216 (350)
+..+++|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. ++..+++|+.|+++.|..
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4899999999999999999887 78999999999999954 4556653 478899999999998775
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=106.81 Aligned_cols=123 Identities=20% Similarity=0.318 Sum_probs=76.7
Q ss_pred cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEec
Q 037732 87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLR 164 (350)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~ 164 (350)
+.+++ .+.....+|..+ .++++.|++++|.+..+|..|..+++|++|++++|.++. +..+..+++|++|+++
T Consensus 13 ~~l~~---~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRC---SNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEEC---TTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEc---CCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 34555 333345555432 246677777777776666666677777777777777666 3456667777777777
Q ss_pred CCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732 165 GSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 165 ~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
+|.+..++. .+..+++|++|++++ +.+..++...+..+++|+.|++++|++
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 776665554 466666777777766 344455554456666666666666654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2.4e-13 Score=105.88 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=103.5
Q ss_pred CCCccEEEecccCCccc-cccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCc
Q 037732 83 CPQLELLFICADKESSS-LTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLA 159 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~ 159 (350)
.++++.|++ +.+... +.+|.. +..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. + ..+..+++|+
T Consensus 16 ~~~l~~L~l--~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVL--DNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEEC--TTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEc--cCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 368999999 555544 367764 46899999999999999877 678999999999999999988 4 5566799999
Q ss_pred EEEecCCCCcccc--ccccCCCCccEEeccCCCCCCccCc---chhCCCCCCcEEEcC
Q 037732 160 VLCLRGSDIKRLP--VEVGELTLLRLLDLRDCMELEVIPP---NILSNLSHLEELYMG 212 (350)
Q Consensus 160 ~L~l~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~ 212 (350)
+|++++|.+..+| ..+..+++|++|++++| .+...+. ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999999765 78999999999999995 4555554 347889999999875
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=8.4e-13 Score=107.47 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=96.6
Q ss_pred eEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCC
Q 037732 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCME 191 (350)
Q Consensus 114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~ 191 (350)
+.++++++.+..+|..+. .+|++|++++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 567888888888887653 578888888888887 6788888888888888888887765 578888888888888 44
Q ss_pred CCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732 192 LEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 248 (350)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 248 (350)
+..+++..+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISV-------VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCB-------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCe-------eChhhhhcCccccEEEeCCCCee
Confidence 555665447888888888888888732 23345777888888888888753
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=9.4e-13 Score=107.12 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=99.1
Q ss_pred cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCcc--ccCcccccEEEecCCCCCC--chhhhccCCCcEEE
Q 037732 87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPSS--LGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLC 162 (350)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~ 162 (350)
+++++ .+.....+|..++ .+++.|++++|.+..++.. +..+++|++|++++|.++. +..+..+++|++|+
T Consensus 11 ~~l~~---s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDC---TGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEEC---TTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEc---CCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 67778 3444577776543 3889999999999887653 8889999999999999888 57888999999999
Q ss_pred ecCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732 163 LRGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFD 217 (350)
Q Consensus 163 l~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (350)
+++|.+..++.. +..+++|++|++++|......|.. +..+++|++|++++|.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCcc
Confidence 999999877654 788999999999995444433444 788999999999998874
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=5.7e-12 Score=101.03 Aligned_cols=123 Identities=23% Similarity=0.381 Sum_probs=69.2
Q ss_pred cEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEe
Q 037732 87 ELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCL 163 (350)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l 163 (350)
+.+.+ .+.....+|..+ .++++.|++++|.+..+|. .+..+++|++|++++|.++. + ..+..+++|++|++
T Consensus 10 ~~l~~---~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRC---NSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEEC---CSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEe---cCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 44555 233344455332 3566666666666665443 34566666666666666655 2 33456666666666
Q ss_pred cCCCCcccccc-ccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC
Q 037732 164 RGSDIKRLPVE-VGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 164 ~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
++|.++.+|.. +..+++|+.|++++| .+..++...+..+++|++|++++|.+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 66666655543 455666666666663 34445554345566666666666655
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=2.1e-12 Score=122.27 Aligned_cols=122 Identities=22% Similarity=0.190 Sum_probs=102.5
Q ss_pred cceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccccccccCCCCccEEeccCCC
Q 037732 112 QVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLLRLLDLRDCM 190 (350)
Q Consensus 112 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~ 190 (350)
.|+.|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 57889999999999987 9999999999999999998 889999999999999999999998 89999999999999954
Q ss_pred CCCcc--CcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeE
Q 037732 191 ELEVI--PPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLE 241 (350)
Q Consensus 191 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 241 (350)
+..+ |.. ++.+++|+.|++++|.+...+. .....+..+++|+.|+
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEE
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccC
Confidence 5555 666 8999999999999998843321 1222345578888875
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.4e-14 Score=116.35 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=112.0
Q ss_pred CccEEEecccCC-ccccccChHHHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-chhhhccCCCcEEE
Q 037732 85 QLELLFICADKE-SSSLTIPNKFFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVLC 162 (350)
Q Consensus 85 ~L~~L~l~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~ 162 (350)
.++...+ ... .....+|.. +..+++|++|++++|.+..+| .+..+++|++|++++|.+.. +..+..+++|++|+
T Consensus 24 ~l~~~~l--~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVEL--HGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TCSEEEC--CBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred chheeEe--ccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 4555555 221 123445544 568999999999999988888 78889999999999999888 66777789999999
Q ss_pred ecCCCCccccccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhh---ccccccchhhcCCCc
Q 037732 163 LRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEV---EGVKNASLHELKHLI 238 (350)
Q Consensus 163 l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~ 238 (350)
+++|.+..+| .+..+++|++|++++| .+..++. ..+..+++|++|++++|.+....+.. .......+..+++|+
T Consensus 100 L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 100 ISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 9999998887 6888899999999884 4554443 23788999999999988773321100 001122377888898
Q ss_pred eeEEEecCC
Q 037732 239 SLELQIQDV 247 (350)
Q Consensus 239 ~L~l~~~~~ 247 (350)
.|+ ++.+
T Consensus 178 ~Ld--~~~i 184 (198)
T 1ds9_A 178 KLD--GMPV 184 (198)
T ss_dssp EEC--CGGG
T ss_pred EEC--Cccc
Confidence 886 5544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.8e-11 Score=98.04 Aligned_cols=128 Identities=25% Similarity=0.351 Sum_probs=98.2
Q ss_pred ceEEeecCCcCcCCCccccCcccccEEEecCCCCCC-c-hhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCC
Q 037732 113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD-I-TVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC 189 (350)
Q Consensus 113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~ 189 (350)
.+.++++++.+..+|..+. ++|++|++++|.+.. + ..+..+++|++|++++|.+..+|.. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~- 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE- 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-
Confidence 4678888888888876543 688999999988877 3 4568888999999998888877764 57888999999988
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCCC
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTF 250 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 250 (350)
+.+..++...+..+++|++|++++|.+. +..+..+..+++|+.|++++|.+...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-------EeCHHHhcCCcccCEEEecCCCeecc
Confidence 4455666655678889999999988873 22334467788899999988876543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=5e-12 Score=111.84 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=67.7
Q ss_pred hcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC--c-ccccccCccce-EEEEeCCCcccchHHHHHHhccccee
Q 037732 233 ELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCR-EFKIDLDSKIRLKDGLILKLEGIEDL 306 (350)
Q Consensus 233 ~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 306 (350)
.+++|+.+++..|.+..++... .+.+|+++.+..+- + ...+..|++|+ .+.+.. ....++...+..+++|+.+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 3678888888887777777765 46777777774331 1 12467788888 888877 4555555445567888888
Q ss_pred eeccccccchhhhhhhhcccCcCcceEEEE
Q 037732 307 WLSYLEEQDVNYFVNELVKVGPSQLKHLYI 336 (350)
Q Consensus 307 ~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l 336 (350)
++++|.++.+ -+..| .++++|+.++.
T Consensus 303 ~l~~n~i~~I--~~~aF--~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTL--GDELF--GNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEE--CTTTT--CTTCCCCEEEC
T ss_pred EeCCCccCcc--chhhh--cCCcchhhhcc
Confidence 8888888873 12345 67888888763
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.29 E-value=8.1e-11 Score=106.65 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=118.7
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC--chhhhccCCCcE
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAV 160 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~ 160 (350)
..+..+.+ . .....++...|.++ +|+.+.+..+ +..++. .|.. .+|+.+.+.. .+.. ...+..+.+|+.
T Consensus 113 ~~l~~i~i---p-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIIL---P-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEEC---C-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEE---C-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 44555555 2 22344444445443 5666666654 443332 3444 3566666664 3333 355666677777
Q ss_pred EEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732 161 LCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL 240 (350)
Q Consensus 161 L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 240 (350)
+++..|.+..++.....+.+|+.+.+.. .+..++...+.++++|+.+.+..+ +.. ....+|.+ .+|+.+
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~-------I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VST-------IGQEAFRE-SGITTV 253 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCE-------ECTTTTTT-CCCSEE
T ss_pred eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccC-------cccccccc-CCccEE
Confidence 7776666666666544456677766653 255555555666677777766532 211 11223333 455555
Q ss_pred EEEecCCCCCCccc--ccCCccEEEEEEcCcc---------cccccCccceEEEEeCCCcccchHHHHHHhcccceeeec
Q 037732 241 ELQIQDVNTFPRGL--FLEKLETFKILIGGVW---------GWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLS 309 (350)
Q Consensus 241 ~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 309 (350)
.+ .+.+..++... .+++|+.+.+..+... ..+..|++|+.+.+.. ....++...+..+++|+.+.|.
T Consensus 254 ~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 254 KL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred Ee-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 55 33344443333 3555665555432211 1355556666665553 2334444333345566666664
Q ss_pred cccccchhhhh-hhhcccCcCcceEEEEeCccceecc
Q 037732 310 YLEEQDVNYFV-NELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 310 ~n~l~~~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
.| ++. +. .+| .++ +|+.+++.+|....++
T Consensus 332 ~~-l~~---I~~~aF--~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 332 AN-VTQ---INFSAF--NNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TT-CCE---ECTTSS--SSS-CCCEEEECCSSCCBCC
T ss_pred cc-ccE---EcHHhC--CCC-CCCEEEEcCCCCcccc
Confidence 32 333 22 223 444 5666666655544433
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=3.7e-14 Score=116.12 Aligned_cols=132 Identities=19% Similarity=0.236 Sum_probs=102.2
Q ss_pred cCCcceEEeecCCcCc-------CCCccccCcccccEEEecCCCCCCchhhhccCCCcEEEecCCCCccccccccCCCCc
Q 037732 109 RMIQVRVINFSYMNLL-------SLPSSLGLLSNLQNLSLYNCKLLDITVIRDLKKLAVLCLRGSDIKRLPVEVGELTLL 181 (350)
Q Consensus 109 ~l~~L~~L~l~~~~~~-------~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L 181 (350)
....++.++++.+.+. .+|..+..+++|++|++++|.+..++.+..+++|++|++++|.+..+|..+..+++|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 4455555555554443 344588899999999999999888448899999999999999999998878888999
Q ss_pred cEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCCCC
Q 037732 182 RLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 249 (350)
Q Consensus 182 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (350)
+.|++++| .+..+|. +..+++|++|++++|.+..++. ...+..+++|+.|++++|.+..
T Consensus 96 ~~L~L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~~~------~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 96 EELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGE------IDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEEEEE-ECCCHHH--HHHHHHSSEEEESEEECCCHHH------HHHHTTTTTCSEEEECSCHHHH
T ss_pred CEEECcCC-cCCcCCc--cccCCCCCEEECCCCcCCchhH------HHHHhcCCCCCEEEecCCcccc
Confidence 99999984 4555663 6788999999999888754321 1357788899999999987643
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=4.7e-11 Score=95.30 Aligned_cols=101 Identities=28% Similarity=0.451 Sum_probs=71.8
Q ss_pred eEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCCC
Q 037732 114 RVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDCM 190 (350)
Q Consensus 114 ~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~~ 190 (350)
+.++++++.+..+|..+. ++|++|++++|.+.. +..+..+++|++|++++|++..+|.. +..+++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 567777777777777554 677888888877776 45677777788888877777777765 46777777777777 4
Q ss_pred CCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732 191 ELEVIPPNILSNLSHLEELYMGPRSFD 217 (350)
Q Consensus 191 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (350)
.+..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 455566554667777777777777663
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=5.2e-11 Score=94.71 Aligned_cols=102 Identities=27% Similarity=0.413 Sum_probs=73.7
Q ss_pred ceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCcccccc-ccCCCCccEEeccCC
Q 037732 113 VRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPVE-VGELTLLRLLDLRDC 189 (350)
Q Consensus 113 L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~l~~~ 189 (350)
.+.++++++.++.+|..+. .+|++|++++|.++. +..+..+++|++|++++|++..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4567777777777776553 677888888887777 45577778888888888877777764 46777888888877
Q ss_pred CCCCccCcchhCCCCCCcEEEcCCCCCC
Q 037732 190 MELEVIPPNILSNLSHLEELYMGPRSFD 217 (350)
Q Consensus 190 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (350)
+.+..++...+.++++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4455566554677778888888777663
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=7.9e-12 Score=110.56 Aligned_cols=249 Identities=12% Similarity=0.113 Sum_probs=146.6
Q ss_pred CCCccEEEecccCCccccccChHHHhc-CCcceEEeecCCcCc--CCCccccCcccccEEEecCCCCCCchhhhc-----
Q 037732 83 CPQLELLFICADKESSSLTIPNKFFER-MIQVRVINFSYMNLL--SLPSSLGLLSNLQNLSLYNCKLLDITVIRD----- 154 (350)
Q Consensus 83 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~----- 154 (350)
..+++.|.+ ++ ......... +.. +++|+.|+|++|.+. ..+. +.++.++.+.+..+.+.. ..+..
T Consensus 24 ~~~l~~L~l--~g-~i~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~-~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTL--TG-KLNAEDFRH-LRDEFPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPA-YAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEE--EE-EECHHHHHH-HHHSCTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECT-TTTEEEETTE
T ss_pred hCceeEEEE--ec-cccHHHHHH-HHHhhccCeEEecCcceeEEecCcc--ccccccccccccccccCH-HHhccccccc
Confidence 456777777 22 211111112 233 778888888888876 2221 122224445444443221 33445
Q ss_pred ---cCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCC----Ccchh-----
Q 037732 155 ---LKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSF----DKWEV----- 221 (350)
Q Consensus 155 ---l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~----- 221 (350)
+.+|+.+++.. .+..++. .+..|++|+.+++.. +.+..++...+..+.++..+....... ..+..
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 78888888877 6776665 477788888888877 444455655566666666665443110 00000
Q ss_pred ----------hhccccccch----hhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcCcc---c-ccccCccceE
Q 037732 222 ----------EVEGVKNASL----HELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGGVW---G-WEYADIWCRE 281 (350)
Q Consensus 222 ----------~~~~~~~~~l----~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~---~-~~~~~~~L~~ 281 (350)
...+.++..+ -...++..+.+.++-...-...+ .+++|+.+++..+.+. . .+..|.+|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 0000001000 11344555555554211101111 2689999999654432 2 5889999999
Q ss_pred EEEeCCCcccchHHHHHHhcccc-eeeeccccccchhhhh-hhhcccCcCcceEEEEeCccceeccCC
Q 037732 282 FKIDLDSKIRLKDGLILKLEGIE-DLWLSYLEEQDVNYFV-NELVKVGPSQLKHLYIRGSHLTLNPAE 347 (350)
Q Consensus 282 L~l~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~p~~ 347 (350)
+++..+ ...++...+..+++|+ .+++.+ .++. ++ ..| .++++|+.+++.++.++.+++.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~---I~~~aF--~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA---IEFGAF--MGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE---ECTTTT--TTCTTEEEEEECSSCCCEECTT
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceE---Echhhh--hCCccCCEEEeCCCccCccchh
Confidence 999987 6667776666789999 999987 6666 43 455 7899999999999999998874
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=3.6e-10 Score=102.35 Aligned_cols=235 Identities=13% Similarity=0.117 Sum_probs=166.6
Q ss_pred CCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCCCCCC-chhhhccCCCcEE
Q 037732 84 PQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLAVL 161 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L 161 (350)
.+|+.+.+ .. . ...++...|.++ +|+.+.+.. .+..++ ..|..+.+|+.+++..+.+.. +.......+|+.+
T Consensus 135 ~~L~~i~l--~~-~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 135 SQIAKVVL--NE-G-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCCSEEEC--CT-T-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CCccEEEe--CC-C-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 37888888 32 2 566776667664 699999986 555543 578899999999999988877 4333346899999
Q ss_pred EecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCcee
Q 037732 162 CLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISL 240 (350)
Q Consensus 162 ~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 240 (350)
.+..+ +..++. .+.+|++|+.+.+.. .+..++...+.+ .+|+.+.+. +.+. .....+|.++++|+.+
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp-~~i~-------~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLP-NGVT-------NIASRAFYYCPELAEV 276 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEE-TTCC-------EECTTTTTTCTTCCEE
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeC-CCcc-------EEChhHhhCCCCCCEE
Confidence 99754 776665 578899999999976 356677665666 789999885 4442 2334678899999999
Q ss_pred EEEecCCC-----CCCccc--ccCCccEEEEEEcC--c-ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeecc
Q 037732 241 ELQIQDVN-----TFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSY 310 (350)
Q Consensus 241 ~l~~~~~~-----~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 310 (350)
.+.++... .++... .+.+|+.+.+...- + ...+..|.+|+.+.+..+ ...++...+..+ +|+.+++.+
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 99887654 455444 57889988885221 1 125778899999999665 444544444556 999999999
Q ss_pred ccccchhhhhhhhcccCcC-cceEEEEeCccce
Q 037732 311 LEEQDVNYFVNELVKVGPS-QLKHLYIRGSHLT 342 (350)
Q Consensus 311 n~l~~~~~~~~~l~~~~~~-~L~~L~l~~~~~~ 342 (350)
|....+ ....+ .+++ .++.|++-.+.+.
T Consensus 355 n~~~~l--~~~~F--~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 355 TTPPQV--FEKVW--YGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSCCBC--CCSSC--CCSCTTCCEEEECGGGHH
T ss_pred CCCccc--ccccc--cCCCCCccEEEeCHHHHH
Confidence 988773 22334 4564 7888988776543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=4.9e-10 Score=89.34 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=85.3
Q ss_pred ccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCC
Q 037732 136 LQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP 213 (350)
Q Consensus 136 L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 213 (350)
-+.++++++.+.. |..+. .+|++|++++|.+..+ |..+.++++|+.|++++ +.+..+|...+.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence 4788999998877 65554 8899999999999877 45688899999999998 566777776568899999999999
Q ss_pred CCCCcchhhhccccccchhhcCCCceeEEEecCCCCCCcc
Q 037732 214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFPRG 253 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 253 (350)
|.+. +..+..+..+++|+.|++++|.+...+..
T Consensus 91 N~l~-------~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 91 NHLK-------SIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp SCCC-------CCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred Cccc-------eeCHHHhccccCCCEEEeCCCCccccccc
Confidence 8883 22334588889999999999987765543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=4.7e-10 Score=89.10 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=83.0
Q ss_pred cccEEEecCCCCCC-chhhhccCCCcEEEecCCCCccc-cccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcC
Q 037732 135 NLQNLSLYNCKLLD-ITVIRDLKKLAVLCLRGSDIKRL-PVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMG 212 (350)
Q Consensus 135 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (350)
..+.++++++.++. |..+ ..+|++|++++|.++.+ |..+..+++|++|++++ +.+..++...+.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECC
Confidence 46788999988888 5554 37889999999988877 44688889999999988 45667777657888999999999
Q ss_pred CCCCCcchhhhccccccchhhcCCCceeEEEecCCCCCC
Q 037732 213 PRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNTFP 251 (350)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 251 (350)
+|.+. +..+..+..+++|+.|++++|.+...+
T Consensus 87 ~N~l~-------~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLK-------SIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCC-------CCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccC-------EeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88873 333456888888999999888765443
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.02 E-value=2e-11 Score=109.48 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=51.9
Q ss_pred CCcceEEeecCCcCcC-----CCcccc-CcccccEEEecCCCCCC--chhh-hccCCCcEEEecCCCCccc-----cccc
Q 037732 110 MIQVRVINFSYMNLLS-----LPSSLG-LLSNLQNLSLYNCKLLD--ITVI-RDLKKLAVLCLRGSDIKRL-----PVEV 175 (350)
Q Consensus 110 l~~L~~L~l~~~~~~~-----lp~~l~-~l~~L~~L~l~~~~l~~--~~~l-~~l~~L~~L~l~~~~~~~l-----p~~l 175 (350)
++.++.|++++|.++. +...+. ..++|++|++++|.+.. ...+ ..+.+|+.|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4567777777776653 222222 12567777777776654 2222 2345666667766666521 1112
Q ss_pred -cCCCCccEEeccCCCCCC----ccCcchhCCCCCCcEEEcCCCCC
Q 037732 176 -GELTLLRLLDLRDCMELE----VIPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 176 -~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
...++|++|++++|.... .++.. +..+++|++|++++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCC
Confidence 134455555555533211 11211 23445555555555544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=9.4e-11 Score=105.18 Aligned_cols=160 Identities=15% Similarity=0.080 Sum_probs=112.8
Q ss_pred CCccEEEecccCCccccccChHHHh----cCCcceEEeecCCcCcC--CCccccCcccccEEEecCCCCCC--chhh---
Q 037732 84 PQLELLFICADKESSSLTIPNKFFE----RMIQVRVINFSYMNLLS--LPSSLGLLSNLQNLSLYNCKLLD--ITVI--- 152 (350)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~l~~~~l~~--~~~l--- 152 (350)
+.++.|++ +.+.........+.. ..++|+.|++++|.++. ...-...+.+|++|++++|.+.+ ...+
T Consensus 72 ~~L~~L~L--s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNL--AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEEC--TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEe--cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 57889999 555543322222211 23699999999998863 22222346789999999999877 3443
Q ss_pred --hccCCCcEEEecCCCCcc-----ccccccCCCCccEEeccCCCCCC----ccCcchhCCCCCCcEEEcCCCCCCcchh
Q 037732 153 --RDLKKLAVLCLRGSDIKR-----LPVEVGELTLLRLLDLRDCMELE----VIPPNILSNLSHLEELYMGPRSFDKWEV 221 (350)
Q Consensus 153 --~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 221 (350)
...++|++|++++|.++. ++..+..+++|++|++++|.... .++.. +...++|++|++++|.+....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 246789999999998863 55567788999999999965322 12333 567789999999999885322
Q ss_pred hhccccccchhhcCCCceeEEEecCCCC
Q 037732 222 EVEGVKNASLHELKHLISLELQIQDVNT 249 (350)
Q Consensus 222 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (350)
...++..+...++|+.|++++|.++.
T Consensus 228 --~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 --ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp --HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred --HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 23455667788999999999998764
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=5.7e-09 Score=92.75 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=57.2
Q ss_pred cccccChHHHhcCCcceEEeecC-CcCcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCCcEEEecCCCCccccc
Q 037732 98 SSLTIPNKFFERMIQVRVINFSY-MNLLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGSDIKRLPV 173 (350)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~lp~ 173 (350)
....+|. +..+.+|+.|+|++ |.+..+| ..|..+++|++|+|++|.++. +..+..+++|++|+|++|++..+|.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4555666 34666677777775 6666654 356677777777777777666 3456667777777777777776665
Q ss_pred cccCCCCccEEeccCC
Q 037732 174 EVGELTLLRLLDLRDC 189 (350)
Q Consensus 174 ~l~~l~~L~~L~l~~~ 189 (350)
.+.....|+.|++.+|
T Consensus 98 ~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGN 113 (347)
T ss_dssp TTTCSCCCCEEECCSS
T ss_pred HHcccCCceEEEeeCC
Confidence 4433333677776664
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=5.8e-08 Score=86.41 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=21.0
Q ss_pred cCccceEEEEeCCCccc-----chHHHHHHhcccceeeeccccccc
Q 037732 275 ADIWCREFKIDLDSKIR-----LKDGLILKLEGIEDLWLSYLEEQD 315 (350)
Q Consensus 275 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~l~~ 315 (350)
.+++|++|+++.|.... ++.++ ..+++|+.|+|++|.+++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCH
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCH
Confidence 35566666666554332 11122 234666666666666554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=3.3e-08 Score=87.78 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=70.3
Q ss_pred EEEecCC-CCCC-chhhhccCCCcEEEecC-CCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCC
Q 037732 138 NLSLYNC-KLLD-ITVIRDLKKLAVLCLRG-SDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP 213 (350)
Q Consensus 138 ~L~l~~~-~l~~-~~~l~~l~~L~~L~l~~-~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 213 (350)
.++.+++ .++. |. +..+.+|+.|++++ |.+..+|. .+..+++|+.|++++| .+..+++..+.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 6777 55 77788888888885 78877764 5778888888888874 45556655467888888888888
Q ss_pred CCCCcchhhhccccccchhhcCCCceeEEEecCCCC
Q 037732 214 RSFDKWEVEVEGVKNASLHELKHLISLELQIQDVNT 249 (350)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 249 (350)
|.+...+ +..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~-------~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLS-------WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCC-------STTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeC-------HHHcccCC-ceEEEeeCCCccC
Confidence 8773322 23334444 7888888777653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=6.8e-08 Score=85.97 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=60.9
Q ss_pred HHhcCCcceEEeecCCcCcCCCccccCcccccEEEecCCCCCC--chhhh--ccCCCcEEEecCC--C------Cccccc
Q 037732 106 FFERMIQVRVINFSYMNLLSLPSSLGLLSNLQNLSLYNCKLLD--ITVIR--DLKKLAVLCLRGS--D------IKRLPV 173 (350)
Q Consensus 106 ~~~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~--~l~~L~~L~l~~~--~------~~~lp~ 173 (350)
+...+++|+.|.++++.-..++. + .+++|+.|++..|.+.. ...+. .+++|++|+++.+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34455666666666552122333 2 25566666666655544 33333 4566666665421 1 111111
Q ss_pred cc--cCCCCccEEeccCCCCCCccCcch--hCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecCC
Q 037732 174 EV--GELTLLRLLDLRDCMELEVIPPNI--LSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDV 247 (350)
Q Consensus 174 ~l--~~l~~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 247 (350)
.+ ..+++|++|++.+|......+..+ ...+++|++|+++.|.+.... ...++..+..+++|+.|+++.|.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcceEEECCCCcC
Confidence 11 234556666665543322111110 123455666666555442110 112233344555556665555543
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=1.7e-06 Score=78.17 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=132.9
Q ss_pred ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCC-ccccCcccccEEEecCC------------C
Q 037732 79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLP-SSLGLLSNLQNLSLYNC------------K 145 (350)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~l~~~------------~ 145 (350)
.+.++++|+.+.+ . .....++...|.+|.+|+.+++..+ +..++ ..|..+..|+.+.+..+ .
T Consensus 66 AF~~c~~L~~i~l--p--~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKI--P--STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEEC--C--TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC
T ss_pred HhhCCCCceEEEe--C--CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccc
Confidence 4557888999988 3 2356677666888899999988754 33332 24555555555444321 0
Q ss_pred C---------CC--chhhhccCCCcEEEecCCCCccccc-cccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCC
Q 037732 146 L---------LD--ITVIRDLKKLAVLCLRGSDIKRLPV-EVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGP 213 (350)
Q Consensus 146 l---------~~--~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 213 (350)
. .. ...+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..++...+.++..|+.+.+..
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCC
Confidence 0 00 134556677777777554 333433 456677777776654 23444444355555555554432
Q ss_pred CCCCc--------------chhhhccccccchhhcCCCceeEEEecCCC--------------------CCCccc--ccC
Q 037732 214 RSFDK--------------WEVEVEGVKNASLHELKHLISLELQIQDVN--------------------TFPRGL--FLE 257 (350)
Q Consensus 214 ~~~~~--------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------~l~~~~--~~~ 257 (350)
+.... .+..+.......+..+..++.+.+..+... .++... .+.
T Consensus 218 ~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 218 SLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp TCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred CceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccc
Confidence 21100 000000011123445556666555443210 112222 356
Q ss_pred CccEEEEEEcC--c-ccccccCccceEEEEeCCCcccchHHHHHHhcccceeeeccccccchhhhh-hhhcccCcCcceE
Q 037732 258 KLETFKILIGG--V-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFV-NELVKVGPSQLKH 333 (350)
Q Consensus 258 ~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~ 333 (350)
+|+.+.+..+- + ...+..|.+|+.+.+..+ ...++...+..+.+|+.+.+..+ ++. ++ .+| .++++|+.
T Consensus 298 ~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~---I~~~aF--~~C~~L~~ 370 (394)
T 4fs7_A 298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK---IGANAF--QGCINLKK 370 (394)
T ss_dssp TCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE---ECTTTB--TTCTTCCE
T ss_pred cccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE---ehHHHh--hCCCCCCE
Confidence 67776663221 1 124667888888887643 44455444455788888888754 555 33 344 67888999
Q ss_pred EEEeCc
Q 037732 334 LYIRGS 339 (350)
Q Consensus 334 L~l~~~ 339 (350)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 888654
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=3.1e-07 Score=72.26 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=50.0
Q ss_pred CcceEEeecCCcCcC-CCccccCcccccEEEecCCC-CCC--chhhhcc----CCCcEEEecCC-CCcc--ccccccCCC
Q 037732 111 IQVRVINFSYMNLLS-LPSSLGLLSNLQNLSLYNCK-LLD--ITVIRDL----KKLAVLCLRGS-DIKR--LPVEVGELT 179 (350)
Q Consensus 111 ~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~l~~~~-l~~--~~~l~~l----~~L~~L~l~~~-~~~~--lp~~l~~l~ 179 (350)
..|+.|++++|.++. --..+..+++|+.|++++|. +++ +..++.+ ++|++|++++| +++. + ..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 357777777777663 22345677777777777774 555 5555553 35777777766 4552 2 1345566
Q ss_pred CccEEeccCCCCCC
Q 037732 180 LLRLLDLRDCMELE 193 (350)
Q Consensus 180 ~L~~L~l~~~~~~~ 193 (350)
+|++|++++|..++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 66666666665544
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=4.7e-07 Score=72.69 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=63.5
Q ss_pred HhcCCcceEEeecCC-cCcC-----CCccccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCcc----
Q 037732 107 FERMIQVRVINFSYM-NLLS-----LPSSLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIKR---- 170 (350)
Q Consensus 107 ~~~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~~---- 170 (350)
+...+.|+.|++++| .+.. +...+...++|++|++++|.+.+ . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445677777777777 6652 44456666778888888877765 1 344455677777777777662
Q ss_pred -ccccccCCCCccEEec--cCCCCCCc----cCcchhCCCCCCcEEEcCCCCC
Q 037732 171 -LPVEVGELTLLRLLDL--RDCMELEV----IPPNILSNLSHLEELYMGPRSF 216 (350)
Q Consensus 171 -lp~~l~~l~~L~~L~l--~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 216 (350)
+...+...++|++|++ ++|..... +... +...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence 4445555566666666 44222111 1111 33445566666655544
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=3.4e-06 Score=76.18 Aligned_cols=97 Identities=7% Similarity=-0.003 Sum_probs=64.5
Q ss_pred chhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEc--Cc-ccccccCccceEEEEeCCCcccchHHHHHHhcccc
Q 037732 230 SLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIG--GV-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIE 304 (350)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 304 (350)
.+..+.+|+.+.+..+ +..++... .+.+|+.+.+... .+ ...+.+|.+|+.+.+..+ ...++...+..|++|+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 4667788888887543 55555554 4678888887422 11 125778999999988765 4455554555689999
Q ss_pred eeeeccccccchhhhhhhhcccCcCcceEE
Q 037732 305 DLWLSYLEEQDVNYFVNELVKVGPSQLKHL 334 (350)
Q Consensus 305 ~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L 334 (350)
.+++..+ ++. +...+ ..+++|+.+
T Consensus 370 ~i~lp~~-~~~---~~~~F--~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-LEQ---YRYDF--EDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-GGG---GGGGB--CTTCEEEEE
T ss_pred EEEECCC-CEE---hhhee--cCCCCCcEE
Confidence 9999753 333 43445 778888765
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=2e-05 Score=71.11 Aligned_cols=75 Identities=9% Similarity=0.183 Sum_probs=37.1
Q ss_pred CccEEEecccCCccccccChHHHhcCCcceEEeecCCc---CcCCC-ccccCcccccEEEecCCCCCC--chhhhccCCC
Q 037732 85 QLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMN---LLSLP-SSLGLLSNLQNLSLYNCKLLD--ITVIRDLKKL 158 (350)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L 158 (350)
.|+.+.+ . .....+....|.+|.+|+.+.+..+. ++.++ ..|..+..|+.+.+..+ +.. ...+..+.+|
T Consensus 65 ~L~sI~i--P--~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQI--P--DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEE--C--TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred cCEEEEE--C--CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 4777777 2 22455555556677777777775542 33322 23445555555444332 111 2333444455
Q ss_pred cEEEec
Q 037732 159 AVLCLR 164 (350)
Q Consensus 159 ~~L~l~ 164 (350)
+.+.+.
T Consensus 140 ~~i~lp 145 (394)
T 4gt6_A 140 DTVTIP 145 (394)
T ss_dssp CEEECC
T ss_pred cccccc
Confidence 555443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=4.6e-07 Score=72.71 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=85.6
Q ss_pred CCccccCcccccEEEecCC-CCCC--c----hhhhccCCCcEEEecCCCCc-----cccccccCCCCccEEeccCCCCCC
Q 037732 126 LPSSLGLLSNLQNLSLYNC-KLLD--I----TVIRDLKKLAVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDCMELE 193 (350)
Q Consensus 126 lp~~l~~l~~L~~L~l~~~-~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~ 193 (350)
+...+...+.|++|++++| .+.. . ..+...++|++|++++|.+. .+...+...++|++|++++|....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3345667889999999999 8876 2 45566789999999999887 345566677889999999854332
Q ss_pred c----cCcchhCCCCCCcEEEc--CCCCCCcchhhhccccccchhhcCCCceeEEEecCCC
Q 037732 194 V----IPPNILSNLSHLEELYM--GPRSFDKWEVEVEGVKNASLHELKHLISLELQIQDVN 248 (350)
Q Consensus 194 ~----~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 248 (350)
. +... +...++|++|++ ++|.+.... ...+...+...+.|+.|++++|.++
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 3333 567788999999 777774321 2235566777788999999888753
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.8e-06 Score=67.85 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=41.9
Q ss_pred ccccEEEecCCCCCC--chhhhccCCCcEEEecCC-CCccc-cccccCC----CCccEEeccCCCCCCccCcchhCCCCC
Q 037732 134 SNLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS-DIKRL-PVEVGEL----TLLRLLDLRDCMELEVIPPNILSNLSH 205 (350)
Q Consensus 134 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~-~~~~l-p~~l~~l----~~L~~L~l~~~~~~~~~~~~~l~~l~~ 205 (350)
..|+.||+++|.+++ ...+..+++|+.|++++| .++.- -..+..+ ++|++|++++|..++...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666665554 455556666666666665 34411 1123332 346666666655444322212455566
Q ss_pred CcEEEcCCCCC
Q 037732 206 LEELYMGPRSF 216 (350)
Q Consensus 206 L~~L~l~~~~~ 216 (350)
|++|++++|..
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 66666665543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=6.3e-06 Score=69.68 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=42.0
Q ss_pred CcccccEEEecCCCCCCc----hhhhccCCCcEEEecCCCCccccccccCCC--CccEEeccCCCCCCccC------cch
Q 037732 132 LLSNLQNLSLYNCKLLDI----TVIRDLKKLAVLCLRGSDIKRLPVEVGELT--LLRLLDLRDCMELEVIP------PNI 199 (350)
Q Consensus 132 ~l~~L~~L~l~~~~l~~~----~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~--~L~~L~l~~~~~~~~~~------~~~ 199 (350)
.+++|+.|+|++|.++.+ ..+..+++|+.|++++|.+..+. .+..+. +|++|++++|.....+| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 455666666666666552 23345666666666666665442 233333 66666666644333333 123
Q ss_pred hCCCCCCcEEE
Q 037732 200 LSNLSHLEELY 210 (350)
Q Consensus 200 l~~l~~L~~L~ 210 (350)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45666666664
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=4.4e-05 Score=68.77 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=59.2
Q ss_pred ccCCCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCC-CccccCcccccEEEecCCCCCC-chhhhccC
Q 037732 79 EVVECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSL-PSSLGLLSNLQNLSLYNCKLLD-ITVIRDLK 156 (350)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~ 156 (350)
.+.+|++|+.+.+..........+....|..+.+|+.+.+..+ +..+ ...|..+.+|+.+.+..+-..- ...+..+.
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCY 160 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceeccc
Confidence 3457899999988211112355666666777888887777654 3332 3356677778888775432111 24455666
Q ss_pred CCcEEEecCCCCccccccccCCCCccEEec
Q 037732 157 KLAVLCLRGSDIKRLPVEVGELTLLRLLDL 186 (350)
Q Consensus 157 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~l 186 (350)
+|+.+.+..+ +..+.........|+.+.+
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred ccccccccce-eeEeccccccccceeEEEE
Confidence 6766666543 3333332222344555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=2.8e-05 Score=65.68 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=56.4
Q ss_pred hccCCCcEEEecCCCCcccc---ccccCCCCccEEeccCCCCCCccCc-chhCCCCCCcEEEcCCCCCCcchhhhccccc
Q 037732 153 RDLKKLAVLCLRGSDIKRLP---VEVGELTLLRLLDLRDCMELEVIPP-NILSNLSHLEELYMGPRSFDKWEVEVEGVKN 228 (350)
Q Consensus 153 ~~l~~L~~L~l~~~~~~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 228 (350)
.++++|+.|++++|++..++ ..+..+++|+.|++++| .+..+.. ..+..+ +|++|++.+|++..-.........
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 46789999999999887554 45678899999999984 4444322 113334 899999999987320000001112
Q ss_pred cchhhcCCCceeE
Q 037732 229 ASLHELKHLISLE 241 (350)
Q Consensus 229 ~~l~~l~~L~~L~ 241 (350)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467788888775
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.79 E-value=0.00084 Score=59.93 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=56.9
Q ss_pred chhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC--c-ccccccCccceEEEEeCCCcccchHHHHHHhcccc
Q 037732 230 SLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCREFKIDLDSKIRLKDGLILKLEGIE 304 (350)
Q Consensus 230 ~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 304 (350)
.+.++..|+.+.+..+ +..+.... .+.+|+.+.+...- + ...+..|.+|+.+.+..+....++...+..+.+|+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 3555666666666433 33333333 35666666663211 1 12456777788887777666666655555567788
Q ss_pred eeeeccccccchhhhh-hhhcccCcCcceEEEEe
Q 037732 305 DLWLSYLEEQDVNYFV-NELVKVGPSQLKHLYIR 337 (350)
Q Consensus 305 ~L~L~~n~l~~~~~~~-~~l~~~~~~~L~~L~l~ 337 (350)
.+.|.. .++. +. .+| .++.+|+.+.+-
T Consensus 314 ~i~lp~-~l~~---I~~~aF--~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPT-ALKT---IQVYAF--KNCKALSTISYP 341 (379)
T ss_dssp EEECCT-TCCE---ECTTTT--TTCTTCCCCCCC
T ss_pred EEEcCc-cccE---EHHHHh--hCCCCCCEEEEC
Confidence 877754 2444 32 233 566677766653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.53 E-value=0.0027 Score=56.61 Aligned_cols=247 Identities=10% Similarity=0.027 Sum_probs=128.8
Q ss_pred CCCCccEEEecccCCccccccChHHHhcCCcceEEeecCCcCcCCCc-cccCcccccEEEecCCCCCC-chhhhccCCCc
Q 037732 82 ECPQLELLFICADKESSSLTIPNKFFERMIQVRVINFSYMNLLSLPS-SLGLLSNLQNLSLYNCKLLD-ITVIRDLKKLA 159 (350)
Q Consensus 82 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~ 159 (350)
...+++.+.+ ......++...|.+|.+|+.+.+..+ ++.++. .|..+ .|+.+.+..+ +.. ........+|+
T Consensus 44 ~~~~i~~v~i----p~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 44 DRDRISEVRV----NSGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGGGCSEEEE----CTTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred cccCCEEEEe----CCCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 4467777777 23356666666778888888888654 444333 45444 5666655432 222 11111223677
Q ss_pred EEEecCCCCccccccccCCCCccEEeccCCCCCCccCcchhCCCCCCcEEEcCCCCCCcchh------------------
Q 037732 160 VLCLRGSDIKRLPVEVGELTLLRLLDLRDCMELEVIPPNILSNLSHLEELYMGPRSFDKWEV------------------ 221 (350)
Q Consensus 160 ~L~l~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------------------ 221 (350)
.+.+..+ +..+........++..+.+.. .+..+....+..+..++...+..........
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 7776543 333332221222344444332 2333333334555555555444322110000
Q ss_pred ----------hhccccccchhhcCCCceeEEEecCCCCCCccc--ccCCccEEEEEEcC--c-ccccccCccceEEEEeC
Q 037732 222 ----------EVEGVKNASLHELKHLISLELQIQDVNTFPRGL--FLEKLETFKILIGG--V-WGWEYADIWCREFKIDL 286 (350)
Q Consensus 222 ----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~-~~~~~~~~~L~~L~l~~ 286 (350)
.........+..+.+++.+.+..+ +..++... .+..|+.+.+...- + ...+..+.+|+.+.+..
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc
Confidence 000011123344455655555332 23333333 46778888774321 1 12566788899998865
Q ss_pred CCcccchHHHHHHhcccceeeeccccccchhhhhhhhcccCcCcceEEEEeCccceecc
Q 037732 287 DSKIRLKDGLILKLEGIEDLWLSYLEEQDVNYFVNELVKVGPSQLKHLYIRGSHLTLNP 345 (350)
Q Consensus 287 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~p 345 (350)
+ ...++...+..+++|+.+.+.++.++.+ -...| .++.+|+.+.|..+ ++.++
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I--~~~aF--~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETL--EPRVF--MDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCCEE--CTTTT--TTCTTCCEEECCTT-CCEEC
T ss_pred c-ceecccccccccccccccccccccccee--hhhhh--cCCCCCCEEEcCcc-ccEEH
Confidence 3 3445544555689999999988777763 12345 67899999998543 44443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.0029 Score=50.55 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=50.3
Q ss_pred cCCcceEEeecCC-cCcC-----CCccccCcccccEEEecCCCCCC--c----hhhhccCCCcEEEecCCCCc-----cc
Q 037732 109 RMIQVRVINFSYM-NLLS-----LPSSLGLLSNLQNLSLYNCKLLD--I----TVIRDLKKLAVLCLRGSDIK-----RL 171 (350)
Q Consensus 109 ~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~l~~~~~~-----~l 171 (350)
.-+.|+.|+|+++ .+.. +.+.+..-+.|+.|+|++|.+.+ - ..+..-..|+.|++++|.+. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4566777777764 5542 44556666778888888877765 1 44555667777777777776 23
Q ss_pred cccccCCCCccEEeccC
Q 037732 172 PVEVGELTLLRLLDLRD 188 (350)
Q Consensus 172 p~~l~~l~~L~~L~l~~ 188 (350)
...+..-+.|++|++++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 34444455566666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.55 E-value=0.0032 Score=50.31 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=72.8
Q ss_pred ccCcccccEEEecCC-CCCC------chhhhccCCCcEEEecCCCCc-----cccccccCCCCccEEeccCCCCCC----
Q 037732 130 LGLLSNLQNLSLYNC-KLLD------ITVIRDLKKLAVLCLRGSDIK-----RLPVEVGELTLLRLLDLRDCMELE---- 193 (350)
Q Consensus 130 l~~l~~L~~L~l~~~-~l~~------~~~l~~l~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~---- 193 (350)
+..-+.|+.|+++++ .+.+ -+.+..-..|+.|++++|.+. .+...+..-+.|++|+++.|....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999885 6655 155666778999999998887 345556666888888888844322
Q ss_pred ccCcchhCCCCCCcEEEcCCCCCCcchhhhccccccchhhcCCCceeEEEecC
Q 037732 194 VIPPNILSNLSHLEELYMGPRSFDKWEVEVEGVKNASLHELKHLISLELQIQD 246 (350)
Q Consensus 194 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 246 (350)
.+... +..-+.|++|+++++....+.......+.+.+..-+.|+.|+++.+.
T Consensus 117 ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 12222 44556688888875422111110022345566666778888876654
No 163
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.40 E-value=0.00075 Score=63.54 Aligned_cols=58 Identities=5% Similarity=-0.015 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHhc--cCCCCCC---hHHHHHHHHHHHHHHHHhcCC-----------ccchhhHHHHHHHHhcccc
Q 037732 1 YTAIASIDDLLMYGMGM--GLFQGVN---KMQVARARAHGLVHKLKACCM-----------FSMHDVVRDVAISIASTEQ 64 (350)
Q Consensus 1 ~~~~i~~~~l~~~w~a~--g~~~~~~---~~~~~~~~~~~~~~~l~~~~~-----------~~~h~l~~d~~~~~~~~~~ 64 (350)
||.+...+ +.+|+|+ ||+...+ ..+++. + ++++|+.+++ |+|||++|+++.+++.++.
T Consensus 399 fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~---~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 399 MPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVA---D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SCTTCCEE--HHHHHHHSCC-------CCCTHHHH---H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eCCCCeee--eeeeeeeccceeccCCCCCCHHHHH---H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 45443333 8999999 9997533 233332 2 6666666666 8999999999998887653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.19 E-value=0.0015 Score=48.73 Aligned_cols=55 Identities=9% Similarity=-0.078 Sum_probs=33.0
Q ss_pred EEEEeCCCcc--cchHHHHHHhcccceeeeccccccchhhhhh-hhcccCcCcceEEEEeCcccee
Q 037732 281 EFKIDLDSKI--RLKDGLILKLEGIEDLWLSYLEEQDVNYFVN-ELVKVGPSQLKHLYIRGSHLTL 343 (350)
Q Consensus 281 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~~~~~~L~~L~l~~~~~~~ 343 (350)
.++.+++... .+|.. ..++|+.|+|++|+++. ++. .+ ..+++|+.|+|.+|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~---l~~~~f--~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTA---LPPGLL--DALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSS---CCTTTG--GGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCc---cChhhh--hhccccCEEEecCCCeec
Confidence 4444555554 55533 22467777777777776 332 33 566777777777777654
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.49 E-value=0.028 Score=41.60 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=15.1
Q ss_pred cccEEEecCCCCCC--chhhhccCCCcEEEecCC
Q 037732 135 NLQNLSLYNCKLLD--ITVIRDLKKLAVLCLRGS 166 (350)
Q Consensus 135 ~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~ 166 (350)
+|++|+|++|.++. ...+..+++|++|++.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 34455555555444 233444445555555544
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.76 E-value=1.1 Score=46.13 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHhcCC-----------ccchhhHHHHHHHHhccc
Q 037732 4 IASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM-----------FSMHDVVRDVAISIASTE 63 (350)
Q Consensus 4 ~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~h~l~~d~~~~~~~~~ 63 (350)
.|.++.++.+|.+++ ++++ +++++|+.+++ |+||+++|+++.....++
T Consensus 394 ~i~~~~~~~~~~~~~--------~~~~----~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 394 KVPTKVLCVLWDLET--------EEVE----DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEHHHHHHHHTCCH--------HHHH----HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eeCHHHHHHHhCCCH--------HHHH----HHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 488999999997762 3344 45555655665 899999999999887654
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=70.06 E-value=2.8 Score=42.32 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHhcCC---------ccchhhHHHHH
Q 037732 4 IASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM---------FSMHDVVRDVA 56 (350)
Q Consensus 4 ~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~h~l~~d~~ 56 (350)
.|.++.++.+|+++| . ++++ +++++|+.+++ |+|||+++++.
T Consensus 386 ~I~~elLa~LW~aeG-----e--edAe----~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 386 HIPTILLSLIWFDVI-----K--SDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp CEEHHHHHHHHCSSC-----S--HHHH----HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCCHHHHHHHhcCCC-----H--HHHH----HHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 478889999999998 1 2344 45566666665 89999999865
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=42.46 E-value=25 Score=32.77 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHhcCC-----------ccchhhHHHHHHHHh
Q 037732 4 IASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVHKLKACCM-----------FSMHDVVRDVAISIA 60 (350)
Q Consensus 4 ~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~h~l~~d~~~~~~ 60 (350)
.|..+.+...|.+++ +++ .+++++|+.+++ |+||+++++++....
T Consensus 394 ~i~~~~l~~l~~~~~--------~~~----~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 394 KVPTKVLCILWDMET--------EEV----EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp CEEHHHHHHHHTCCH--------HHH----HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ccCHHHHHHHhccCH--------HHH----HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 366777777786541 233 445555555665 899999999998774
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.88 E-value=51 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=5.3
Q ss_pred ccCCCCccEEec
Q 037732 175 VGELTLLRLLDL 186 (350)
Q Consensus 175 l~~l~~L~~L~l 186 (350)
+.+|.+|+.+.+
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 344444444444
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.52 E-value=36 Score=23.26 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=5.7
Q ss_pred HhcCCcceEEeec
Q 037732 107 FERMIQVRVINFS 119 (350)
Q Consensus 107 ~~~l~~L~~L~l~ 119 (350)
|.+|..|+.+.+.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 3344444444444
No 171
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=21.85 E-value=37 Score=22.50 Aligned_cols=31 Identities=23% Similarity=0.063 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHhccCCCCCChHHHHHHHHHHHHH
Q 037732 5 ASIDDLLMYGMGMGLFQGVNKMQVARARAHGLVH 38 (350)
Q Consensus 5 i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~~~ 38 (350)
.++++++.+|.|+-+ +.+-++++.|..+++.
T Consensus 8 aRRNklLglWAAe~l---Gltg~~aeaYa~~vv~ 38 (85)
T 2kzc_A 8 ARRNKLMGLWVAEVL---GKSGDEANAYAAEVVK 38 (85)
T ss_dssp HHHHHHHHHHHHHHH---TCCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 468899999999942 2334567776666555
Done!