BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037733
(1450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 46/235 (19%)
Query: 298 LLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE-IMGTVPPHPLKE-LSDN 355
LL+LDDVW+ WV + F++ Q I++TTR+ V + +MG P++ L
Sbjct: 239 LLILDDVWDS----WV--LKAFDSQCQ---ILLTTRDKSVTDSVMGPKYVVPVESSLGKE 289
Query: 356 DCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVL----- 410
L I + + L E ++ +C G PL +G LLR +R WE L
Sbjct: 290 KGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQN 347
Query: 411 ---------SSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEII 461
SS +E +E A+++S L ++ + S+L KD + + +
Sbjct: 348 KQFKRIRKSSSYDYEALDE------AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 462 LLWCASGFLDHKESENPSEDLGRDFFKELYSRSFFQQSSNNTS-RFVMHDLINDL 515
+LW + +E++ D +E ++S N S R+ +HDL D
Sbjct: 402 ILW-----------DMETEEV-EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 46/235 (19%)
Query: 298 LLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE-IMGTVPPHPLKE-LSDN 355
LL+LDDVW+ WV + F++ Q I++TTR+ V + +MG P++ L
Sbjct: 245 LLILDDVWDS----WV--LKAFDSQCQ---ILLTTRDKSVTDSVMGPKYVVPVESSLGKE 295
Query: 356 DCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVL----- 410
L I + + L E ++ +C G PL +G LLR +R WE L
Sbjct: 296 KGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQN 353
Query: 411 ---------SSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEII 461
SS +E +E A+++S L ++ + S+L KD + + +
Sbjct: 354 KQFKRIRKSSSYDYEALDE------AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 407
Query: 462 LLWCASGFLDHKESENPSEDLGRDFFKELYSRSFFQQSSNNTS-RFVMHDLINDL 515
+LW + +E++ D +E ++S N S R+ +HDL D
Sbjct: 408 ILW-----------DMETEEV-EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 1151 TLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNN---------TSLERIRIYFCE 1201
LPA + SL L+ L + +C +L + E L + +L+ +R+ +
Sbjct: 141 ALPASIASLN------RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT- 193
Query: 1202 NLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNL 1261
+++LP+ + NL+ L+ ++I S L ++ + + LE++D C L+ P
Sbjct: 194 GIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 1262 HQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTS 1311
L+ +IL C NL++ P +L +L++ C L LP + L +
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 32/189 (16%)
Query: 1074 SLVSFPEVALPS------KLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYI 1127
+L P ALP+ +LRE+ I C L LPE + ++S E +++ Q L
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSL--- 188
Query: 1128 AGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLD 1187
RL+ G IR+L PA + +L+ +LK L++ + S L ++ +
Sbjct: 189 ----------RLEWTG---IRSL--PASIANLQ------NLKSLKIRN-SPLSALGPAIH 226
Query: 1188 NNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSD 1247
+ LE + + C L+N P L+ + + CS L ++ + T LEK+D
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 1248 CENLKILPS 1256
C NL LPS
Sbjct: 287 CVNLSRLPS 295
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 999 GLLQDICSLKRLM---IGWCPKL----QSLVAEEEKDQQQQLCEL-SCRLEYLGLSHCEG 1050
L I SL RL I CP+L + L + + + Q L L S RLE+ G+
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---- 196
Query: 1051 LVKLPQXXXXXXXXRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNN 1110
LP + ++IRN P + KL E+ + GC AL++ P +
Sbjct: 197 --SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGR 252
Query: 1111 SSLEILCVLHC-QLLTYIAGVQLPPSLKRLDIYGCSNI-RTLTLPAKLESLEVGNLPPSL 1168
+ L+ L + C LLT + L++LD+ GC N+ R +L A+L + + +PP L
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312
Query: 1169 K 1169
+
Sbjct: 313 Q 313
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 16/219 (7%)
Query: 1067 IEIRNCSSLVSFPEVALP-SKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLT 1125
+E+R+ L FP+ A S L+ ID L LP+ + LE L + L
Sbjct: 86 LELRSVP-LPQFPDQAFRLSHLQHXTIDAA-GLXELPDT--XQQFAGLETLTLARNPLRA 141
Query: 1126 YIAGVQLPPSLKRLDIYGCSNIRTLTLP-----AKLESLEVGNLPPSLKFLEVNSCSKLE 1180
A + L+ L I C + L P A E + NL SL+ LE L
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ-SLR-LEWTGIRSLP 199
Query: 1181 SVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSL 1240
+ L N SL +IR L L +H+L +L E+ + C+ L + L
Sbjct: 200 ASIANLQNLKSL-KIR---NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 1241 EKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFP 1279
+++ DC NL LP +H L QL ++ L C NL P
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 34/185 (18%)
Query: 1040 LEYLGLSHCEGLVKLPQXXXXXXXXRKIEIRNCSSLVSFPEVALPS----------KLRE 1089
LE L L+ L LP R++ IR C L PE + L+
Sbjct: 129 LETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 1090 IRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRT 1149
+R++ ++SLP + N +L+ L + + L + P L+ LD+ GC+ +R
Sbjct: 188 LRLEWT-GIRSLPAS--IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR- 243
Query: 1150 LTLPAKLESLEVGNLPP------SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENL 1203
N PP LK L + CS L ++ + T LE++ + C NL
Sbjct: 244 -------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 1204 KNLPS 1208
LPS
Sbjct: 291 SRLPS 295
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 608 ISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIR 667
+ + PD L +L++ + G+ LP++ + L TL L + L+ L A + L R
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 668 LHHLKNSNTHSLEEMPLGIGKLTCL---QTLCNFVVGKDSGSGLRELKSLMHLKGTLNIS 724
L L L E+P + Q L N + +G+R L + +I+
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--------SIA 203
Query: 725 NLENVKHI 732
NL+N+K +
Sbjct: 204 NLQNLKSL 211
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 1171 LEVNSCSKLESVAERLDNNTSLERIRIYF-CENLKNLPSGLHNLRQLREIRISLCSKLES 1229
+E + L++ A+ L++ T R+ + L P L L+ I + L
Sbjct: 60 IETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTID-AAGLXE 118
Query: 1230 IAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEG-------- 1281
+ + LE + T L+ LP+ + +L++LRE+ + C L PE
Sbjct: 119 LPDTXQQFAGLETL-TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 1282 ---GLPCAKLTRLEISYCKRLQALPKGLHNLTSLQ----ELRIIGDS----PLCDDLQLA 1330
GL + RLE + + L A L NL SL+ L +G + P ++L L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 1331 GCDDGMVSFPP 1341
GC + ++PP
Sbjct: 238 GC-TALRNYPP 247
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1356 ASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPE 1398
A L +L ++R P L L +SI L L EL I CP+L PE
Sbjct: 127 AGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPE 168
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 621 LRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHHLKNSNTHSLE 680
L+ L L TGIR+LP S+ L NL +L + + L L + L +L L +L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 681 EMPLGIGKLTCLQTL-----CNFVVGKDSGSGLRELKSLMHLKGTLNISNLENV 729
P G L+ L N + L +L+ L L+G +N+S L ++
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL-DLRGCVNLSRLPSL 296
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 135/331 (40%), Gaps = 69/331 (20%)
Query: 218 VPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAG-QNV 276
V I GM G GK+ LA + V+DH L+ C S + + K + ++ QN+
Sbjct: 150 VTIYGMAGCGKSVLAA-----EAVRDHSLLEG--CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 277 ----DNHDLNKLQVELNKQLSGKKF-----------LLVLDDVWNENYNYWVEFSRPFEA 321
D + ++ LN + + + LL+LDDVW+ WV +A
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----WV-----LKA 253
Query: 322 GAQGSKIIVTTRNHEVAE-IMGTVPPHPLKE-LSDNDCLAIFAQHSLGPRELLDEIGKKL 379
+I++TTR+ V + +MG P++ L L I + +E L +
Sbjct: 254 FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSI 313
Query: 380 VSKCGGLPLAAQTLGGLLRGKHDRRVWEGVL--------------SSKIWELPEERCGII 425
+ +C G PL +G LLR +R W L SS +E +E
Sbjct: 314 IKECKGSPLVVSLIGALLRDFPNR--WAYYLRQLQNKQFKRIRKSSSYDYEALDE----- 366
Query: 426 PALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRD 485
A+++S L ++ + S+L KD + + + +LW L+ +E E D
Sbjct: 367 -AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW----DLETEEVE--------D 413
Query: 486 FFKELYSRSFFQQSSNNTSR-FVMHDLINDL 515
+E ++S + N S + +HDL D
Sbjct: 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 134/331 (40%), Gaps = 69/331 (20%)
Query: 218 VPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAG-QNV 276
V I GM G GK+ LA + V+DH L+ C S + + K + ++ QN+
Sbjct: 157 VTIYGMAGCGKSVLAA-----EAVRDHSLLEG--CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 277 ----DNHDLNKLQVELNKQLSGKKF-----------LLVLDDVWNENYNYWVEFSRPFEA 321
D + ++ LN + + + LL+LDDVW+ WV +A
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----WV-----LKA 260
Query: 322 GAQGSKIIVTTRNHEVAE-IMGTVPPHPLKE-LSDNDCLAIFAQHSLGPRELLDEIGKKL 379
+I++TT + V + +MG P++ L L I + +E L +
Sbjct: 261 FDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSI 320
Query: 380 VSKCGGLPLAAQTLGGLLRGKHDRRVWEGVL--------------SSKIWELPEERCGII 425
+ +C G PL +G LLR +R W L SS +E +E
Sbjct: 321 IKECKGSPLVVSLIGALLRDFPNR--WAYYLRQLQNKQFKRIRKSSSYDYEALDE----- 373
Query: 426 PALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRD 485
A+++S L ++ + S+L KD + + + +LW L+ +E E D
Sbjct: 374 -AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW----DLETEEVE--------D 420
Query: 486 FFKELYSRSFFQQSSNNTSR-FVMHDLINDL 515
+E ++S + N S + +HDL D
Sbjct: 421 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 12/58 (20%)
Query: 612 PDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLH 669
P++ +L L+YL +S TGI+ LP+ ++ H L+K+ D++D I +H
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPD------------VHKIHSLQKVLLDIQDNINIH 142
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 12/61 (19%)
Query: 612 PDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHHL 671
P++ +L L+YL +S TGI+ LP+ V+K+ H L+K+ D++D I +H +
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPD-VHKI-----------HSLQKVLLDIQDNINIHTI 144
Query: 672 K 672
+
Sbjct: 145 E 145
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 36/169 (21%)
Query: 1132 LPPSLKRLDIYGCSNIRTLTLPAKLESLE--------VGNLPPSLKFLEVNS-----CSK 1178
LPP + L+I + I LPA LE L+ + LP SLK L+V++ +
Sbjct: 78 LPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTXLPE 137
Query: 1179 LESVAERL--DNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDN 1236
L ++ E + DNN L LP+ L L +R +++ +L E LD
Sbjct: 138 LPALLEYINADNNQ---------LTXLPELPTSLEVL-SVRNNQLTFLPELPESLEALDV 187
Query: 1237 NTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRC--GNLVSFPEGGL 1283
+T+L E+L +P + N H I FRC + PE L
Sbjct: 188 STNL-------LESLPAVP--VRNHHSEETEIFFRCRENRITHIPENIL 227
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 603 LCGYHISKLPDSI-GDLRYLRYLNLSGTGIRTLPESV-NKLYNLHTLLLNDCHQLKKLCA 660
L G + LP+ + L L YLNLS +++LP V +KL L L LN +QL+ L
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPD 117
Query: 661 DMEDLIRLHHLKNSNTH--SLEEMPLGI-GKLTCLQ 693
+ D +L LK+ + L+ +P G+ +LT LQ
Sbjct: 118 GVFD--KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 612 PDSIGDLRYLRYLNLSGTGIRTLPESV-NKLYNLHTLLLN 650
P + L YLR LN+SG + TL ESV + + NL TL+L+
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 11 ASVELLVNKLASEGIRLFARQQQIQADLMKWKKMLVMIKAVLDDAEE--KKTADQSVKLW 68
A++ L+ KL F + ++ ++ K L A L E ++ D KLW
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 69 LGELQNLAYDVEDLMDEF 86
E++ L+Y +ED++D+F
Sbjct: 61 ADEVRELSYVIEDVVDKF 78
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From
Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich Effector
Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 153/362 (42%), Gaps = 77/362 (21%)
Query: 1069 IRNCSSLVSFPEVALPSKLREIRIDGCD--ALKSLPEAWMCDNNSSLEILCVLHCQLLTY 1126
+ +C+SL PE LP L+ + +D + AL LP LE L V + Q L
Sbjct: 97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQ-LEK 145
Query: 1127 IAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERL 1186
+ +Q LK +D+ S + LP LE + GN ++LE + E
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN-------------NQLEELPEL- 191
Query: 1187 DNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKL--ESIAERLDNNTSLEKID 1244
+L + + +N ++L++L ++ +SL S + +I E L +L +
Sbjct: 192 ---QNLPFLTAIYADN--------NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 240
Query: 1245 TSDCEN--LKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEIS--YCKRLQ 1300
T +N LK LP +L L R L PE LP + LT L++S L
Sbjct: 241 TIYADNNLLKTLPDLPPSLEALN----VRDNYLTDLPE--LPQS-LTFLDVSENIFSGLS 293
Query: 1301 ALPKGLHNL-TSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIR--------LGNA 1351
LP L+ L S E+R + D P + +L ++ ++ P P + L
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPSLE-ELNVSNNKLIELPALPPRLERLIASFNHLAEV 352
Query: 1352 LPLPASLTSLGIS-----RFPNLE------RLSSSIVDL----QNLTELIIEDCPKLKYF 1396
LP +L L + FP++ R++S + ++ QNL +L +E P L+ F
Sbjct: 353 PELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREF 411
Query: 1397 PE 1398
P+
Sbjct: 412 PD 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,854,739
Number of Sequences: 62578
Number of extensions: 1647422
Number of successful extensions: 3814
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3754
Number of HSP's gapped (non-prelim): 75
length of query: 1450
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1339
effective length of database: 8,027,179
effective search space: 10748392681
effective search space used: 10748392681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)