Query 037733
Match_columns 1450
No_of_seqs 1018 out of 5938
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9E-84 1.9E-88 800.5 50.8 652 25-717 17-692 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-60 4.6E-65 631.1 50.4 307 185-524 181-506 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.4E-40 5.1E-45 443.7 26.7 323 1038-1416 284-607 (968)
4 PF00931 NB-ARC: NB-ARC domain 100.0 4.7E-41 1E-45 383.7 13.7 275 193-473 1-285 (287)
5 PLN00113 leucine-rich repeat r 100.0 8.3E-39 1.8E-43 428.8 26.1 324 1038-1417 260-585 (968)
6 KOG4194 Membrane glycoprotein 99.9 3E-28 6.6E-33 268.2 4.2 345 1037-1415 77-428 (873)
7 KOG4194 Membrane glycoprotein 99.9 1.5E-27 3.2E-32 262.9 2.1 364 978-1388 79-447 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 5.5E-30 1.2E-34 269.9 -21.0 97 597-695 46-142 (565)
9 KOG0618 Serine/threonine phosp 99.9 8.2E-28 1.8E-32 280.3 -5.8 269 1037-1320 240-510 (1081)
10 KOG0618 Serine/threonine phosp 99.9 4.7E-27 1E-31 274.0 -3.5 99 595-695 44-142 (1081)
11 KOG0472 Leucine-rich repeat pr 99.9 2.6E-27 5.6E-32 249.9 -12.1 105 589-695 61-165 (565)
12 KOG0444 Cytoskeletal regulator 99.9 1.4E-25 3E-30 248.3 -7.8 344 1037-1417 31-376 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 2.7E-25 5.8E-30 246.0 -7.2 360 1001-1410 28-393 (1255)
14 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.3E-25 252.4 23.7 349 999-1397 552-910 (1153)
15 PRK15387 E3 ubiquitin-protein 99.6 1.4E-15 3E-20 186.7 16.4 259 1039-1395 202-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 3.7E-15 8.1E-20 183.0 16.5 259 1062-1418 201-460 (788)
17 KOG4237 Extracellular matrix p 99.6 5.7E-17 1.2E-21 172.5 -6.2 255 1036-1299 65-359 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 3.1E-14 6.6E-19 176.7 11.3 247 1085-1393 178-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 4E-14 8.7E-19 175.6 12.1 251 1062-1369 178-428 (754)
20 KOG4237 Extracellular matrix p 99.5 6.4E-16 1.4E-20 164.5 -4.7 244 1162-1428 63-370 (498)
21 cd00116 LRR_RI Leucine-rich re 99.4 1.1E-14 2.5E-19 169.7 -1.2 213 1186-1415 77-319 (319)
22 PRK04841 transcriptional regul 99.4 2.5E-11 5.4E-16 163.0 27.5 293 188-520 14-332 (903)
23 cd00116 LRR_RI Leucine-rich re 99.4 2E-14 4.3E-19 167.7 -2.5 239 1166-1422 23-297 (319)
24 KOG0617 Ras suppressor protein 99.3 1.7E-14 3.8E-19 135.3 -5.5 160 1210-1397 29-189 (264)
25 KOG0617 Ras suppressor protein 99.3 2.2E-14 4.9E-19 134.6 -4.8 151 1166-1321 33-184 (264)
26 KOG4658 Apoptotic ATPase [Sign 99.3 1.7E-12 3.7E-17 163.8 5.2 235 594-844 543-787 (889)
27 PRK00411 cdc6 cell division co 99.2 1.3E-09 2.8E-14 130.5 24.1 295 187-498 29-357 (394)
28 TIGR02928 orc1/cdc6 family rep 99.1 2.1E-08 4.5E-13 118.8 26.6 296 188-499 15-350 (365)
29 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.7E-16 132.6 -0.6 225 1167-1441 122-360 (505)
30 COG2909 MalT ATP-dependent tra 99.0 1.2E-08 2.6E-13 121.6 21.4 290 198-521 25-339 (894)
31 PF01637 Arch_ATPase: Archaeal 99.0 1.3E-09 2.9E-14 120.7 10.6 193 190-392 1-233 (234)
32 TIGR03015 pepcterm_ATPase puta 99.0 2.9E-08 6.3E-13 112.1 21.5 177 215-397 43-242 (269)
33 TIGR00635 ruvB Holliday juncti 99.0 1.2E-08 2.5E-13 117.4 18.1 276 188-499 4-289 (305)
34 PRK00080 ruvB Holliday junctio 99.0 3.5E-09 7.6E-14 122.1 13.7 277 188-500 25-311 (328)
35 KOG4341 F-box protein containi 98.9 7.6E-11 1.6E-15 127.8 -3.4 235 1002-1249 187-437 (483)
36 KOG3207 Beta-tubulin folding c 98.9 2.2E-10 4.8E-15 124.9 -1.2 64 1061-1124 120-185 (505)
37 PF05729 NACHT: NACHT domain 98.9 1.1E-08 2.3E-13 106.3 10.7 144 216-365 1-163 (166)
38 KOG0532 Leucine-rich repeat (L 98.8 1.1E-10 2.3E-15 131.2 -5.6 193 1189-1413 74-270 (722)
39 KOG4341 F-box protein containi 98.8 1.9E-10 4.2E-15 124.7 -4.9 151 1167-1317 295-459 (483)
40 COG3899 Predicted ATPase [Gene 98.8 1.7E-07 3.6E-12 119.9 18.8 309 190-518 2-384 (849)
41 KOG1909 Ran GTPase-activating 98.8 2.6E-10 5.6E-15 121.2 -5.4 134 1188-1321 155-309 (382)
42 KOG1909 Ran GTPase-activating 98.7 1E-09 2.2E-14 116.7 -1.8 231 1166-1415 30-310 (382)
43 KOG1259 Nischarin, modulator o 98.7 2.5E-09 5.5E-14 110.2 0.9 220 1166-1417 182-413 (490)
44 PTZ00112 origin recognition co 98.7 1.5E-06 3.2E-11 104.8 23.8 177 188-366 755-950 (1164)
45 KOG1259 Nischarin, modulator o 98.7 7.3E-09 1.6E-13 106.9 1.6 199 1166-1395 214-414 (490)
46 KOG0532 Leucine-rich repeat (L 98.6 1E-09 2.3E-14 123.4 -6.1 134 1182-1322 113-246 (722)
47 PRK06893 DNA replication initi 98.6 5.3E-07 1.2E-11 97.7 14.3 154 216-397 40-207 (229)
48 PF14580 LRR_9: Leucine-rich r 98.6 1.3E-08 2.8E-13 102.7 1.6 126 1188-1318 17-148 (175)
49 COG2256 MGS1 ATPase related to 98.6 2.1E-07 4.5E-12 102.0 10.6 169 185-389 27-208 (436)
50 PF14580 LRR_9: Leucine-rich r 98.6 3.3E-08 7.2E-13 99.8 3.0 78 1239-1320 20-98 (175)
51 PRK13342 recombination factor 98.5 1.6E-06 3.5E-11 103.2 17.1 173 188-394 12-197 (413)
52 PLN03150 hypothetical protein; 98.5 1.3E-07 2.9E-12 118.1 7.3 109 1216-1324 420-529 (623)
53 PRK05564 DNA polymerase III su 98.5 3.5E-06 7.6E-11 96.6 18.0 179 189-393 5-190 (313)
54 KOG2120 SCF ubiquitin ligase, 98.5 4.2E-09 9.1E-14 108.9 -5.9 181 1038-1249 185-374 (419)
55 PRK14961 DNA polymerase III su 98.4 6.3E-06 1.4E-10 96.2 17.9 191 188-391 16-218 (363)
56 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.2E-06 4.8E-11 93.9 12.9 170 193-396 22-204 (226)
57 PRK14960 DNA polymerase III su 98.4 5E-06 1.1E-10 99.3 16.5 193 188-392 15-218 (702)
58 PLN03150 hypothetical protein; 98.4 3.2E-07 7E-12 114.7 6.7 106 1168-1273 420-526 (623)
59 PRK12402 replication factor C 98.4 4.3E-06 9.3E-11 98.1 15.6 196 188-392 15-225 (337)
60 PRK07003 DNA polymerase III su 98.4 1.2E-05 2.5E-10 97.2 18.8 180 188-394 16-222 (830)
61 PRK14949 DNA polymerase III su 98.4 6.2E-06 1.3E-10 101.7 16.7 182 188-393 16-220 (944)
62 PF05496 RuvB_N: Holliday junc 98.4 2.4E-06 5.2E-11 87.8 11.1 181 188-398 24-226 (233)
63 PF13401 AAA_22: AAA domain; P 98.4 7.4E-07 1.6E-11 88.0 7.3 117 215-334 4-125 (131)
64 PF13191 AAA_16: AAA ATPase do 98.4 8.3E-07 1.8E-11 93.9 7.8 48 189-239 1-48 (185)
65 COG4886 Leucine-rich repeat (L 98.4 3.6E-07 7.9E-12 109.6 5.7 180 1189-1398 115-295 (394)
66 COG4886 Leucine-rich repeat (L 98.3 3.2E-07 6.9E-12 110.1 4.9 102 592-695 112-214 (394)
67 PRK04195 replication factor C 98.3 2.3E-05 5.1E-10 95.3 20.5 246 188-472 14-271 (482)
68 PRK14963 DNA polymerase III su 98.3 2E-06 4.3E-11 103.2 10.5 197 188-390 14-214 (504)
69 cd00009 AAA The AAA+ (ATPases 98.3 4.3E-06 9.3E-11 84.9 11.6 124 191-335 1-130 (151)
70 COG3903 Predicted ATPase [Gene 98.3 1.1E-06 2.5E-11 97.3 7.3 285 214-519 13-313 (414)
71 PF13173 AAA_14: AAA domain 98.3 1.4E-06 3E-11 85.0 7.0 119 216-357 3-127 (128)
72 PRK12323 DNA polymerase III su 98.3 1.2E-05 2.6E-10 95.9 15.7 196 188-393 16-225 (700)
73 PRK06645 DNA polymerase III su 98.3 2E-05 4.4E-10 94.0 17.3 191 188-390 21-226 (507)
74 PRK14957 DNA polymerase III su 98.2 1.9E-05 4.1E-10 94.8 16.6 183 188-394 16-222 (546)
75 PLN03025 replication factor C 98.2 1.8E-05 3.8E-10 91.0 15.8 181 188-390 13-197 (319)
76 KOG2028 ATPase related to the 98.2 1E-05 2.2E-10 86.6 12.5 152 214-388 161-331 (554)
77 PTZ00202 tuzin; Provisional 98.2 4.9E-05 1.1E-09 85.3 18.3 170 183-364 257-433 (550)
78 PRK09112 DNA polymerase III su 98.2 4.4E-05 9.6E-10 87.4 18.3 199 186-394 21-241 (351)
79 PRK07471 DNA polymerase III su 98.2 4.4E-05 9.5E-10 88.0 18.3 196 187-394 18-239 (365)
80 TIGR02903 spore_lon_C ATP-depe 98.2 1E-05 2.2E-10 100.3 13.7 200 188-394 154-396 (615)
81 PRK00440 rfc replication facto 98.2 2.6E-05 5.6E-10 90.7 16.4 180 188-391 17-201 (319)
82 PF13855 LRR_8: Leucine rich r 98.2 1.9E-06 4E-11 71.2 4.8 39 1258-1296 21-59 (61)
83 PRK14956 DNA polymerase III su 98.2 1.9E-05 4.2E-10 92.0 14.8 195 188-390 18-219 (484)
84 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.8E-11 71.4 4.6 59 1191-1249 2-60 (61)
85 cd01128 rho_factor Transcripti 98.2 2.1E-06 4.5E-11 92.8 6.3 91 214-306 15-114 (249)
86 PRK08727 hypothetical protein; 98.2 2.8E-05 6E-10 84.5 15.2 147 216-390 42-201 (233)
87 PRK08691 DNA polymerase III su 98.2 2.3E-05 5E-10 94.8 15.6 178 188-392 16-219 (709)
88 PRK05896 DNA polymerase III su 98.2 3.5E-05 7.5E-10 92.5 16.5 195 188-394 16-222 (605)
89 PRK07940 DNA polymerase III su 98.2 5.3E-05 1.2E-09 88.0 17.6 180 189-393 6-213 (394)
90 TIGR00678 holB DNA polymerase 98.2 4.9E-05 1.1E-09 80.1 16.0 91 294-389 95-187 (188)
91 PRK07994 DNA polymerase III su 98.1 3E-05 6.4E-10 94.6 15.6 194 188-393 16-220 (647)
92 PRK15386 type III secretion pr 98.1 9E-06 1.9E-10 92.2 10.3 160 1210-1413 48-210 (426)
93 PRK14962 DNA polymerase III su 98.1 3.8E-05 8.1E-10 91.6 16.2 185 188-396 14-222 (472)
94 TIGR02397 dnaX_nterm DNA polym 98.1 6.2E-05 1.3E-09 88.9 18.2 183 188-394 14-219 (355)
95 PRK14964 DNA polymerase III su 98.1 4.5E-05 9.8E-10 90.2 16.6 180 188-390 13-214 (491)
96 PRK14951 DNA polymerase III su 98.1 4.5E-05 9.8E-10 92.9 16.9 196 188-392 16-224 (618)
97 PRK09376 rho transcription ter 98.1 5.7E-06 1.2E-10 92.6 8.2 99 199-305 158-266 (416)
98 PRK13341 recombination factor 98.1 2.7E-05 5.8E-10 97.3 15.0 167 188-388 28-212 (725)
99 KOG0531 Protein phosphatase 1, 98.1 5.3E-07 1.1E-11 108.0 -0.1 217 1166-1417 95-319 (414)
100 PRK14958 DNA polymerase III su 98.1 4.4E-05 9.5E-10 92.1 15.9 181 188-391 16-218 (509)
101 PRK08084 DNA replication initi 98.1 4.2E-05 9.2E-10 83.3 14.2 153 216-396 46-212 (235)
102 KOG0531 Protein phosphatase 1, 98.1 4.8E-07 1E-11 108.4 -1.1 216 1167-1416 73-290 (414)
103 COG1474 CDC6 Cdc6-related prot 98.1 9.7E-05 2.1E-09 85.0 17.0 198 190-393 19-238 (366)
104 PRK08903 DnaA regulatory inact 98.1 4.5E-05 9.7E-10 83.3 13.6 151 215-397 42-203 (227)
105 PRK14969 DNA polymerase III su 98.1 8.9E-05 1.9E-09 90.2 17.4 179 188-393 16-221 (527)
106 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.2E-12 109.1 -6.1 127 1263-1418 165-294 (1096)
107 PRK14955 DNA polymerase III su 98.0 4.9E-05 1.1E-09 89.9 14.6 198 188-391 16-226 (397)
108 PRK09087 hypothetical protein; 98.0 4.2E-05 9E-10 82.3 12.6 141 215-394 44-196 (226)
109 PRK09111 DNA polymerase III su 98.0 7.9E-05 1.7E-09 91.2 16.2 197 188-393 24-233 (598)
110 KOG0989 Replication factor C, 98.0 3E-05 6.4E-10 82.1 10.5 183 187-387 35-224 (346)
111 TIGR01242 26Sp45 26S proteasom 98.0 2.2E-05 4.8E-10 92.1 11.0 180 187-387 121-328 (364)
112 PF00308 Bac_DnaA: Bacterial d 98.0 6E-05 1.3E-09 80.8 13.0 185 188-394 9-209 (219)
113 PRK15386 type III secretion pr 98.0 2.4E-05 5.3E-10 88.8 10.3 89 1038-1142 52-140 (426)
114 KOG2982 Uncharacterized conser 98.0 3.2E-06 7E-11 88.0 2.9 85 1353-1441 196-285 (418)
115 PRK14959 DNA polymerase III su 98.0 0.00015 3.3E-09 87.6 17.0 198 188-397 16-225 (624)
116 PRK05642 DNA replication initi 98.0 0.00013 2.8E-09 79.3 14.9 154 216-397 46-212 (234)
117 PRK14952 DNA polymerase III su 98.0 0.00019 4.1E-09 87.3 17.4 198 188-397 13-224 (584)
118 PF14516 AAA_35: AAA-like doma 97.9 0.0012 2.6E-08 76.0 22.6 203 186-400 9-246 (331)
119 PRK14087 dnaA chromosomal repl 97.9 0.00018 3.9E-09 85.8 16.3 167 215-396 141-322 (450)
120 PRK07133 DNA polymerase III su 97.9 0.00026 5.7E-09 87.0 17.7 189 188-391 18-217 (725)
121 PF12799 LRR_4: Leucine Rich r 97.9 8.5E-06 1.8E-10 61.1 3.1 39 597-635 2-40 (44)
122 PRK14970 DNA polymerase III su 97.9 0.00026 5.7E-09 83.5 16.9 180 188-390 17-206 (367)
123 PRK07764 DNA polymerase III su 97.9 0.00021 4.5E-09 90.6 16.7 188 188-390 15-218 (824)
124 KOG2120 SCF ubiquitin ligase, 97.9 7.9E-07 1.7E-11 92.5 -4.1 158 1036-1227 208-376 (419)
125 PRK14950 DNA polymerase III su 97.9 0.00033 7.2E-09 87.0 17.9 195 188-393 16-221 (585)
126 TIGR00767 rho transcription te 97.9 5.3E-05 1.1E-09 85.6 9.8 92 214-306 167-266 (415)
127 PRK08451 DNA polymerase III su 97.9 0.00034 7.4E-09 83.7 17.0 179 188-393 14-218 (535)
128 PF05621 TniB: Bacterial TniB 97.8 0.00026 5.6E-09 76.9 14.1 189 195-390 44-258 (302)
129 KOG1859 Leucine-rich repeat pr 97.8 3.6E-07 7.9E-12 106.0 -8.0 201 1033-1250 79-291 (1096)
130 KOG2982 Uncharacterized conser 97.8 3.1E-06 6.8E-11 88.2 -0.6 81 1063-1143 46-130 (418)
131 PRK11331 5-methylcytosine-spec 97.8 7.7E-05 1.7E-09 85.9 10.4 117 188-317 175-295 (459)
132 PRK06305 DNA polymerase III su 97.8 0.00032 6.9E-09 83.8 16.1 181 188-393 17-223 (451)
133 PHA02544 44 clamp loader, smal 97.8 0.00025 5.4E-09 82.0 14.7 148 188-363 21-171 (316)
134 PRK14953 DNA polymerase III su 97.8 0.00066 1.4E-08 81.6 18.5 183 188-394 16-221 (486)
135 PRK03992 proteasome-activating 97.8 8.9E-05 1.9E-09 87.2 10.8 178 188-386 131-336 (389)
136 PRK14948 DNA polymerase III su 97.8 0.00052 1.1E-08 84.8 17.7 196 188-393 16-222 (620)
137 PRK14954 DNA polymerase III su 97.8 0.00028 6.1E-09 86.5 15.2 196 188-388 16-223 (620)
138 PRK06620 hypothetical protein; 97.8 0.00048 1E-08 73.4 15.2 136 216-392 45-188 (214)
139 PRK14971 DNA polymerase III su 97.8 0.00056 1.2E-08 84.6 17.4 175 188-390 17-219 (614)
140 KOG2227 Pre-initiation complex 97.7 0.00074 1.6E-08 76.0 15.3 196 187-385 149-360 (529)
141 PRK06647 DNA polymerase III su 97.7 0.0012 2.6E-08 80.7 18.0 193 188-392 16-219 (563)
142 TIGR00362 DnaA chromosomal rep 97.6 0.00086 1.9E-08 80.2 16.2 158 215-391 136-308 (405)
143 PF12799 LRR_4: Leucine Rich r 97.6 3.5E-05 7.6E-10 57.8 2.5 39 619-658 1-39 (44)
144 TIGR02881 spore_V_K stage V sp 97.6 0.00048 1E-08 76.7 12.5 160 189-365 7-191 (261)
145 TIGR02639 ClpA ATP-dependent C 97.6 0.00041 8.8E-09 89.0 13.3 155 188-364 182-357 (731)
146 COG2255 RuvB Holliday junction 97.6 0.0013 2.7E-08 69.4 14.2 177 188-394 26-224 (332)
147 PRK05707 DNA polymerase III su 97.6 0.0016 3.4E-08 74.2 16.5 97 294-393 105-203 (328)
148 KOG2543 Origin recognition com 97.6 0.0037 8.1E-08 68.8 18.2 171 187-365 5-193 (438)
149 PRK14965 DNA polymerase III su 97.6 0.0012 2.5E-08 81.7 16.6 194 188-393 16-221 (576)
150 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00048 1E-08 88.7 13.7 175 188-386 187-389 (852)
151 PRK07399 DNA polymerase III su 97.6 0.0018 4E-08 73.2 16.7 198 189-394 5-222 (314)
152 PRK05563 DNA polymerase III su 97.6 0.0017 3.7E-08 79.8 17.4 192 188-391 16-218 (559)
153 CHL00181 cbbX CbbX; Provisiona 97.6 0.0014 3.1E-08 73.2 15.4 134 215-365 59-209 (287)
154 PRK12422 chromosomal replicati 97.6 0.0018 4E-08 77.0 17.0 154 215-387 141-307 (445)
155 PRK00149 dnaA chromosomal repl 97.5 0.0012 2.7E-08 79.8 15.8 158 215-391 148-320 (450)
156 TIGR02880 cbbX_cfxQ probable R 97.5 0.0013 2.8E-08 73.8 14.5 132 217-365 60-208 (284)
157 PRK14088 dnaA chromosomal repl 97.5 0.0014 2.9E-08 78.4 14.1 159 215-391 130-303 (440)
158 CHL00095 clpC Clp protease ATP 97.4 0.0013 2.9E-08 85.4 14.6 155 188-363 179-352 (821)
159 KOG4579 Leucine-rich repeat (L 97.4 5.2E-05 1.1E-09 70.1 0.9 96 588-685 45-141 (177)
160 TIGR00763 lon ATP-dependent pr 97.4 0.0051 1.1E-07 79.5 18.9 165 187-364 319-504 (775)
161 KOG2004 Mitochondrial ATP-depe 97.4 0.0036 7.8E-08 74.1 15.5 107 187-306 410-516 (906)
162 PRK10787 DNA-binding ATP-depen 97.4 0.0028 6.1E-08 80.8 16.1 166 187-365 321-506 (784)
163 PRK11034 clpA ATP-dependent Cl 97.3 0.0011 2.4E-08 83.6 11.8 156 188-364 186-361 (758)
164 PRK14086 dnaA chromosomal repl 97.3 0.0068 1.5E-07 73.3 17.4 157 216-391 315-486 (617)
165 PRK08058 DNA polymerase III su 97.3 0.0047 1E-07 71.0 15.5 148 190-364 7-181 (329)
166 PF00004 AAA: ATPase family as 97.3 0.00049 1.1E-08 67.9 6.5 21 218-238 1-21 (132)
167 PRK08769 DNA polymerase III su 97.3 0.0093 2E-07 67.2 17.3 187 195-394 11-209 (319)
168 smart00382 AAA ATPases associa 97.3 0.0013 2.8E-08 66.0 9.6 88 216-308 3-91 (148)
169 KOG4579 Leucine-rich repeat (L 97.3 3.4E-05 7.4E-10 71.2 -1.8 100 594-695 25-128 (177)
170 PRK06090 DNA polymerase III su 97.2 0.013 2.7E-07 66.1 17.8 178 195-393 10-201 (319)
171 PTZ00454 26S protease regulato 97.2 0.003 6.6E-08 73.8 13.4 179 188-387 145-351 (398)
172 COG1373 Predicted ATPase (AAA+ 97.2 0.0037 8E-08 73.6 14.0 147 217-392 39-191 (398)
173 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0036 7.7E-08 81.7 15.3 154 188-364 173-348 (852)
174 PTZ00361 26 proteosome regulat 97.2 0.0008 1.7E-08 79.1 7.9 157 188-365 183-367 (438)
175 CHL00176 ftsH cell division pr 97.2 0.0034 7.4E-08 77.8 13.7 178 188-386 183-387 (638)
176 PRK08116 hypothetical protein; 97.2 0.0014 3.1E-08 72.5 9.3 104 216-335 115-221 (268)
177 TIGR00602 rad24 checkpoint pro 97.1 0.0029 6.3E-08 77.6 12.2 51 187-238 83-133 (637)
178 PF13177 DNA_pol3_delta2: DNA 97.1 0.0048 1E-07 62.7 11.9 138 192-352 1-161 (162)
179 COG0466 Lon ATP-dependent Lon 97.1 0.011 2.5E-07 70.6 16.3 166 187-365 322-508 (782)
180 KOG1947 Leucine rich repeat pr 97.1 5.6E-05 1.2E-09 94.1 -2.9 15 1235-1249 359-373 (482)
181 PRK10536 hypothetical protein; 97.1 0.0038 8.2E-08 66.7 11.2 134 188-337 55-215 (262)
182 PRK10865 protein disaggregatio 97.1 0.0036 7.8E-08 81.2 12.9 45 188-238 178-222 (857)
183 COG5238 RNA1 Ran GTPase-activa 97.1 0.00016 3.5E-09 74.7 0.5 234 1166-1418 30-318 (388)
184 PRK06871 DNA polymerase III su 97.0 0.025 5.3E-07 64.0 17.7 176 196-390 10-200 (325)
185 KOG1947 Leucine rich repeat pr 97.0 6.5E-05 1.4E-09 93.5 -3.2 35 1109-1143 186-223 (482)
186 COG5238 RNA1 Ran GTPase-activa 97.0 0.00011 2.3E-09 76.0 -1.0 113 1189-1301 156-287 (388)
187 COG0593 DnaA ATPase involved i 97.0 0.014 3.1E-07 66.9 15.6 176 187-383 87-276 (408)
188 TIGR01241 FtsH_fam ATP-depende 97.0 0.0059 1.3E-07 74.9 13.6 179 188-387 55-260 (495)
189 KOG0991 Replication factor C, 97.0 0.0092 2E-07 60.7 12.2 45 188-238 27-71 (333)
190 TIGR03689 pup_AAA proteasome A 96.9 0.005 1.1E-07 73.5 11.7 166 188-366 182-379 (512)
191 KOG0741 AAA+-type ATPase [Post 96.9 0.014 3E-07 66.7 14.1 150 212-383 535-704 (744)
192 PRK08118 topology modulation p 96.9 0.00053 1.1E-08 70.1 2.4 34 217-250 3-37 (167)
193 KOG1644 U2-associated snRNP A' 96.9 0.0014 3.1E-08 65.4 5.1 81 1191-1274 43-125 (233)
194 PF04665 Pox_A32: Poxvirus A32 96.9 0.0018 3.8E-08 68.9 6.3 36 216-253 14-49 (241)
195 PRK07993 DNA polymerase III su 96.9 0.048 1E-06 62.4 18.3 180 195-392 9-203 (334)
196 COG3267 ExeA Type II secretory 96.9 0.028 6.1E-07 59.0 14.7 174 215-395 51-247 (269)
197 TIGR02640 gas_vesic_GvpN gas v 96.8 0.014 3.1E-07 64.8 13.6 56 195-263 9-64 (262)
198 PRK13531 regulatory ATPase Rav 96.8 0.0051 1.1E-07 71.9 10.2 41 190-238 22-62 (498)
199 PF05673 DUF815: Protein of un 96.8 0.0078 1.7E-07 63.5 10.4 127 184-338 23-154 (249)
200 PRK08939 primosomal protein Dn 96.8 0.004 8.7E-08 70.1 9.0 122 192-334 135-260 (306)
201 PRK08181 transposase; Validate 96.8 0.0025 5.4E-08 70.1 7.0 101 216-335 107-209 (269)
202 PRK06964 DNA polymerase III su 96.8 0.031 6.7E-07 63.7 15.8 94 294-394 131-226 (342)
203 COG2812 DnaX DNA polymerase II 96.8 0.004 8.6E-08 73.7 8.7 187 188-387 16-214 (515)
204 KOG3665 ZYG-1-like serine/thre 96.7 0.0012 2.5E-08 82.6 4.2 107 564-677 146-261 (699)
205 PRK10865 protein disaggregatio 96.6 0.02 4.2E-07 74.5 14.6 138 188-334 568-720 (857)
206 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0065 1.4E-07 66.9 8.9 51 213-263 17-71 (235)
207 PRK07952 DNA replication prote 96.6 0.0085 1.8E-07 64.8 9.4 103 215-334 99-204 (244)
208 PRK12608 transcription termina 96.6 0.0092 2E-07 67.5 9.9 103 196-304 119-229 (380)
209 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0021 4.6E-08 72.3 4.8 51 188-238 51-101 (361)
210 PRK06526 transposase; Provisio 96.6 0.0041 8.9E-08 68.0 6.6 100 216-335 99-201 (254)
211 KOG1644 U2-associated snRNP A' 96.5 0.0021 4.5E-08 64.3 3.7 109 1285-1418 41-155 (233)
212 PRK09183 transposase/IS protei 96.5 0.0062 1.4E-07 67.2 7.8 101 216-335 103-206 (259)
213 COG1222 RPT1 ATP-dependent 26S 96.5 0.037 7.9E-07 60.8 13.2 188 189-398 152-372 (406)
214 PRK09361 radB DNA repair and r 96.5 0.0092 2E-07 65.0 9.1 47 213-262 21-67 (225)
215 COG1223 Predicted ATPase (AAA+ 96.5 0.024 5.2E-07 58.8 11.1 178 188-386 121-318 (368)
216 PF01695 IstB_IS21: IstB-like 96.5 0.0032 7E-08 64.9 5.1 100 216-335 48-150 (178)
217 KOG3665 ZYG-1-like serine/thre 96.5 0.0012 2.6E-08 82.5 2.1 63 1185-1249 168-231 (699)
218 TIGR03346 chaperone_ClpB ATP-d 96.5 0.013 2.9E-07 76.4 11.7 137 188-334 565-717 (852)
219 PRK06921 hypothetical protein; 96.5 0.011 2.3E-07 65.5 9.1 37 215-253 117-154 (266)
220 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0098 2.1E-07 77.0 10.1 137 187-334 565-718 (852)
221 PF10443 RNA12: RNA12 protein; 96.4 0.088 1.9E-06 60.3 16.2 195 193-403 1-288 (431)
222 PF02562 PhoH: PhoH-like prote 96.4 0.007 1.5E-07 63.0 6.9 133 192-337 4-158 (205)
223 PRK07261 topology modulation p 96.4 0.0086 1.9E-07 61.6 7.4 66 217-306 2-68 (171)
224 TIGR02237 recomb_radB DNA repa 96.4 0.0088 1.9E-07 64.3 7.8 49 213-264 10-58 (209)
225 PRK11889 flhF flagellar biosyn 96.4 0.028 6.1E-07 63.8 11.7 89 214-306 240-331 (436)
226 TIGR01243 CDC48 AAA family ATP 96.3 0.025 5.5E-07 73.0 12.9 179 188-387 453-657 (733)
227 PRK08699 DNA polymerase III su 96.3 0.038 8.2E-07 63.0 12.7 89 294-389 112-202 (325)
228 PF00158 Sigma54_activat: Sigm 96.3 0.008 1.7E-07 61.2 6.5 133 190-335 1-144 (168)
229 COG0542 clpA ATP-binding subun 96.3 0.014 2.9E-07 72.2 9.4 135 187-334 490-643 (786)
230 TIGR02639 ClpA ATP-dependent C 96.3 0.017 3.6E-07 74.4 10.7 121 188-321 454-579 (731)
231 PRK12377 putative replication 96.2 0.01 2.2E-07 64.4 7.2 101 216-334 102-205 (248)
232 COG0542 clpA ATP-binding subun 96.2 0.013 2.8E-07 72.4 8.9 152 188-363 170-344 (786)
233 TIGR01243 CDC48 AAA family ATP 96.2 0.023 5E-07 73.5 11.8 180 188-388 178-382 (733)
234 TIGR02902 spore_lonB ATP-depen 96.2 0.021 4.6E-07 70.1 10.8 43 189-237 66-108 (531)
235 CHL00195 ycf46 Ycf46; Provisio 96.2 0.021 4.6E-07 68.5 10.2 179 188-387 228-429 (489)
236 PRK06835 DNA replication prote 96.2 0.0076 1.6E-07 68.5 6.1 102 216-334 184-288 (329)
237 PF00910 RNA_helicase: RNA hel 96.2 0.01 2.2E-07 55.6 6.0 21 218-238 1-21 (107)
238 KOG0733 Nuclear AAA ATPase (VC 96.1 0.051 1.1E-06 63.6 12.4 98 188-306 190-293 (802)
239 PF13306 LRR_5: Leucine rich r 96.1 0.022 4.7E-07 55.8 8.5 123 1185-1313 7-129 (129)
240 COG0470 HolB ATPase involved i 96.1 0.03 6.6E-07 65.2 11.2 146 189-355 2-171 (325)
241 PRK04132 replication factor C 96.1 0.081 1.8E-06 67.2 15.3 154 223-393 574-731 (846)
242 CHL00095 clpC Clp protease ATP 96.1 0.022 4.9E-07 74.2 10.9 137 188-334 509-661 (821)
243 KOG2739 Leucine-rich acidic nu 96.1 0.0026 5.6E-08 66.7 1.7 84 1235-1320 40-126 (260)
244 cd01393 recA_like RecA is a b 96.1 0.038 8.3E-07 60.3 11.0 90 213-305 17-124 (226)
245 KOG2739 Leucine-rich acidic nu 96.1 0.0033 7.2E-08 65.9 2.3 100 1213-1316 42-149 (260)
246 cd01120 RecA-like_NTPases RecA 96.1 0.019 4.2E-07 58.9 8.2 40 217-258 1-40 (165)
247 PRK04296 thymidine kinase; Pro 96.0 0.012 2.7E-07 61.7 6.6 114 216-336 3-117 (190)
248 KOG0730 AAA+-type ATPase [Post 96.0 0.03 6.4E-07 66.5 9.9 157 190-367 436-617 (693)
249 PF13207 AAA_17: AAA domain; P 96.0 0.005 1.1E-07 59.5 3.0 21 217-237 1-21 (121)
250 PRK11034 clpA ATP-dependent Cl 95.9 0.013 2.8E-07 74.2 7.2 120 188-320 458-582 (758)
251 COG2607 Predicted ATPase (AAA+ 95.9 0.12 2.6E-06 53.6 12.5 109 185-321 57-166 (287)
252 PRK05541 adenylylsulfate kinas 95.9 0.019 4.2E-07 59.7 7.4 36 214-251 6-41 (176)
253 PRK06696 uridine kinase; Valid 95.9 0.0099 2.1E-07 64.4 5.3 43 192-237 2-44 (223)
254 PF00448 SRP54: SRP54-type pro 95.9 0.028 6E-07 59.0 8.2 89 215-305 1-93 (196)
255 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.6E-08 39.0 0.9 21 620-640 1-21 (22)
256 PF08423 Rad51: Rad51; InterP 95.9 0.016 3.6E-07 63.7 6.8 56 214-270 37-96 (256)
257 KOG0731 AAA+-type ATPase conta 95.9 0.11 2.4E-06 64.0 14.2 181 188-390 311-521 (774)
258 PF07728 AAA_5: AAA domain (dy 95.8 0.0036 7.8E-08 62.2 1.4 87 218-318 2-88 (139)
259 cd01133 F1-ATPase_beta F1 ATP 95.8 0.034 7.4E-07 60.6 8.9 89 214-304 68-172 (274)
260 COG2884 FtsE Predicted ATPase 95.8 0.074 1.6E-06 53.1 10.1 59 282-342 142-204 (223)
261 cd01394 radB RadB. The archaea 95.8 0.034 7.4E-07 60.2 9.0 44 213-258 17-60 (218)
262 KOG1969 DNA replication checkp 95.8 0.027 5.8E-07 67.4 8.5 78 212-308 323-400 (877)
263 PHA02244 ATPase-like protein 95.8 0.064 1.4E-06 60.7 11.1 43 188-238 96-142 (383)
264 KOG2228 Origin recognition com 95.8 0.099 2.2E-06 56.9 11.8 171 189-365 25-219 (408)
265 cd00983 recA RecA is a bacter 95.8 0.018 3.8E-07 64.7 6.6 86 213-305 53-143 (325)
266 PHA00729 NTP-binding motif con 95.7 0.038 8.2E-07 58.3 8.4 24 215-238 17-40 (226)
267 COG1484 DnaC DNA replication p 95.7 0.029 6.3E-07 61.5 7.7 81 215-313 105-185 (254)
268 COG0572 Udk Uridine kinase [Nu 95.6 0.024 5.2E-07 58.9 6.4 79 213-296 6-85 (218)
269 PRK15455 PrkA family serine pr 95.6 0.0091 2E-07 70.6 3.7 49 189-237 77-125 (644)
270 PF05659 RPW8: Arabidopsis bro 95.6 0.3 6.4E-06 48.0 13.5 83 4-86 2-85 (147)
271 PF07693 KAP_NTPase: KAP famil 95.6 0.15 3.3E-06 59.3 14.0 43 194-239 2-44 (325)
272 TIGR02012 tigrfam_recA protein 95.6 0.021 4.5E-07 64.1 6.3 86 213-305 53-143 (321)
273 PF14532 Sigma54_activ_2: Sigm 95.6 0.012 2.5E-07 58.4 3.8 108 191-335 1-110 (138)
274 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.1 2.2E-06 51.9 10.5 105 215-339 26-131 (144)
275 KOG1514 Origin recognition com 95.5 0.33 7.2E-06 58.4 16.0 135 189-332 397-546 (767)
276 TIGR03499 FlhF flagellar biosy 95.5 0.044 9.6E-07 61.4 8.8 87 214-304 193-281 (282)
277 cd03214 ABC_Iron-Siderophores_ 95.5 0.12 2.7E-06 53.8 11.6 122 215-339 25-162 (180)
278 PRK09354 recA recombinase A; P 95.5 0.026 5.6E-07 63.9 6.7 86 213-305 58-148 (349)
279 PLN03187 meiotic recombination 95.5 0.034 7.5E-07 63.3 7.8 58 213-271 124-185 (344)
280 COG4608 AppF ABC-type oligopep 95.5 0.054 1.2E-06 58.0 8.6 126 215-343 39-178 (268)
281 PF13604 AAA_30: AAA domain; P 95.5 0.037 8E-07 58.4 7.5 107 216-335 19-131 (196)
282 TIGR02238 recomb_DMC1 meiotic 95.5 0.035 7.6E-07 62.8 7.7 58 213-271 94-155 (313)
283 PRK08233 hypothetical protein; 95.5 0.04 8.6E-07 57.8 7.8 24 215-238 3-26 (182)
284 cd03247 ABCC_cytochrome_bd The 95.5 0.093 2E-06 54.6 10.4 119 215-339 28-161 (178)
285 cd01131 PilT Pilus retraction 95.4 0.019 4.2E-07 60.7 5.2 112 216-339 2-113 (198)
286 COG1875 NYN ribonuclease and A 95.4 0.084 1.8E-06 58.2 9.7 137 191-336 227-389 (436)
287 KOG2035 Replication factor C, 95.4 0.19 4.1E-06 53.2 11.8 180 190-388 15-223 (351)
288 PRK12724 flagellar biosynthesi 95.4 0.047 1E-06 63.0 8.3 24 214-237 222-245 (432)
289 PRK04301 radA DNA repair and r 95.4 0.043 9.4E-07 63.0 8.1 57 213-270 100-160 (317)
290 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.05 1.1E-06 54.2 7.4 117 216-335 3-138 (159)
291 KOG2123 Uncharacterized conser 95.3 0.0018 3.8E-08 67.6 -2.9 99 596-697 19-124 (388)
292 COG0468 RecA RecA/RadA recombi 95.3 0.065 1.4E-06 58.7 8.8 91 212-305 57-151 (279)
293 PRK05022 anaerobic nitric oxid 95.3 0.23 4.9E-06 61.2 14.6 136 187-335 186-332 (509)
294 cd00544 CobU Adenosylcobinamid 95.3 0.025 5.5E-07 57.6 5.2 79 218-304 2-82 (169)
295 KOG2123 Uncharacterized conser 95.3 0.001 2.3E-08 69.3 -4.8 82 1167-1252 20-102 (388)
296 KOG0734 AAA+-type ATPase conta 95.3 0.1 2.2E-06 60.1 10.2 97 189-306 305-407 (752)
297 KOG0744 AAA+-type ATPase [Post 95.2 0.052 1.1E-06 58.5 7.4 80 215-305 177-260 (423)
298 PRK10733 hflB ATP-dependent me 95.2 0.072 1.6E-06 67.2 10.2 178 188-386 152-356 (644)
299 cd03223 ABCD_peroxisomal_ALDP 95.2 0.15 3.3E-06 52.2 10.9 117 215-339 27-152 (166)
300 PRK00771 signal recognition pa 95.2 0.14 3E-06 60.6 11.8 90 213-306 93-186 (437)
301 cd03238 ABC_UvrA The excision 95.2 0.13 2.9E-06 52.8 10.1 115 215-339 21-153 (176)
302 cd03228 ABCC_MRP_Like The MRP 95.1 0.15 3.3E-06 52.6 10.6 119 215-340 28-160 (171)
303 COG1121 ZnuC ABC-type Mn/Zn tr 95.1 0.07 1.5E-06 57.2 8.0 123 215-339 30-203 (254)
304 TIGR02239 recomb_RAD51 DNA rep 95.1 0.071 1.5E-06 60.6 8.7 57 213-270 94-154 (316)
305 COG1618 Predicted nucleotide k 95.1 0.019 4.2E-07 55.4 3.4 23 216-238 6-28 (179)
306 PLN00020 ribulose bisphosphate 95.1 0.038 8.2E-07 61.8 6.2 26 213-238 146-171 (413)
307 TIGR01650 PD_CobS cobaltochela 95.1 0.24 5.3E-06 55.5 12.5 59 189-260 46-104 (327)
308 PRK14722 flhF flagellar biosyn 95.1 0.064 1.4E-06 61.7 8.2 89 215-306 137-226 (374)
309 cd03222 ABC_RNaseL_inhibitor T 95.1 0.14 3E-06 52.8 9.8 104 215-340 25-137 (177)
310 PRK05703 flhF flagellar biosyn 95.0 0.17 3.7E-06 60.0 12.0 88 215-306 221-310 (424)
311 TIGR02236 recomb_radA DNA repa 95.0 0.088 1.9E-06 60.5 9.3 55 214-269 94-152 (310)
312 COG0563 Adk Adenylate kinase a 95.0 0.035 7.5E-07 57.1 5.3 22 217-238 2-23 (178)
313 cd03216 ABC_Carb_Monos_I This 95.0 0.08 1.7E-06 54.1 8.0 117 215-339 26-146 (163)
314 KOG0733 Nuclear AAA ATPase (VC 95.0 0.19 4.1E-06 59.1 11.5 149 215-386 545-717 (802)
315 PRK07132 DNA polymerase III su 95.0 1 2.2E-05 50.6 17.2 157 215-393 18-185 (299)
316 KOG1051 Chaperone HSP104 and r 95.0 0.12 2.6E-06 65.2 10.7 121 188-320 562-685 (898)
317 PF13671 AAA_33: AAA domain; P 94.9 0.095 2.1E-06 52.3 8.3 21 217-237 1-21 (143)
318 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.037 8E-07 59.2 5.5 122 215-341 29-160 (213)
319 PRK05800 cobU adenosylcobinami 94.9 0.016 3.4E-07 59.2 2.5 81 217-304 3-85 (170)
320 KOG0735 AAA+-type ATPase [Post 94.9 0.048 1E-06 64.9 6.6 73 215-306 431-505 (952)
321 PRK12727 flagellar biosynthesi 94.9 0.12 2.7E-06 61.3 9.9 89 214-306 349-439 (559)
322 TIGR00959 ffh signal recogniti 94.9 0.12 2.7E-06 60.8 10.1 91 213-305 97-192 (428)
323 PRK10867 signal recognition pa 94.9 0.13 2.8E-06 60.7 10.1 25 213-237 98-122 (433)
324 PTZ00301 uridine kinase; Provi 94.9 0.042 9.2E-07 58.2 5.7 23 215-237 3-25 (210)
325 PF00485 PRK: Phosphoribulokin 94.8 0.097 2.1E-06 55.3 8.4 81 217-300 1-88 (194)
326 COG1419 FlhF Flagellar GTP-bin 94.8 0.085 1.8E-06 60.0 8.2 89 214-306 202-292 (407)
327 COG0464 SpoVK ATPases of the A 94.8 0.18 4E-06 62.2 12.0 152 213-385 274-445 (494)
328 PRK13695 putative NTPase; Prov 94.8 0.023 4.9E-07 59.0 3.3 22 217-238 2-23 (174)
329 PRK06067 flagellar accessory p 94.7 0.13 2.7E-06 56.4 9.3 88 213-305 23-130 (234)
330 PRK10820 DNA-binding transcrip 94.7 0.24 5.3E-06 61.0 12.7 45 189-237 205-249 (520)
331 PRK14974 cell division protein 94.7 0.21 4.6E-06 56.9 11.1 91 214-307 139-234 (336)
332 PF00560 LRR_1: Leucine Rich R 94.7 0.016 3.4E-07 36.1 1.2 22 597-618 1-22 (22)
333 PRK12726 flagellar biosynthesi 94.7 0.27 5.9E-06 55.9 11.7 90 214-306 205-296 (407)
334 PLN03186 DNA repair protein RA 94.7 0.15 3.3E-06 58.3 10.0 58 213-271 121-182 (342)
335 cd03230 ABC_DR_subfamily_A Thi 94.7 0.21 4.5E-06 51.7 10.2 119 215-339 26-159 (173)
336 PRK11608 pspF phage shock prot 94.7 0.066 1.4E-06 61.5 7.2 134 189-335 7-151 (326)
337 cd01125 repA Hexameric Replica 94.6 0.2 4.4E-06 55.0 10.6 21 217-237 3-23 (239)
338 PF13306 LRR_5: Leucine rich r 94.6 0.095 2.1E-06 51.2 7.2 100 1167-1271 13-112 (129)
339 TIGR00390 hslU ATP-dependent p 94.6 0.092 2E-06 60.4 7.8 51 188-238 12-70 (441)
340 cd01122 GP4d_helicase GP4d_hel 94.6 0.31 6.7E-06 54.9 12.2 53 215-270 30-82 (271)
341 TIGR00064 ftsY signal recognit 94.5 0.18 3.8E-06 56.1 9.7 91 213-306 70-165 (272)
342 cd03246 ABCC_Protease_Secretio 94.5 0.16 3.5E-06 52.5 8.9 121 215-339 28-160 (173)
343 PRK09270 nucleoside triphospha 94.5 0.16 3.4E-06 55.4 9.2 26 212-237 30-55 (229)
344 PRK15429 formate hydrogenlyase 94.5 0.11 2.4E-06 66.8 9.2 134 189-335 377-521 (686)
345 cd03229 ABC_Class3 This class 94.5 0.11 2.5E-06 53.9 7.7 24 215-238 26-49 (178)
346 PF07724 AAA_2: AAA domain (Cd 94.5 0.06 1.3E-06 55.1 5.5 39 215-255 3-42 (171)
347 TIGR01817 nifA Nif-specific re 94.4 0.26 5.6E-06 61.4 12.1 135 187-334 195-340 (534)
348 PF01583 APS_kinase: Adenylyls 94.4 0.051 1.1E-06 53.9 4.5 36 215-252 2-37 (156)
349 TIGR02974 phageshock_pspF psp 94.4 0.16 3.4E-06 58.4 9.3 45 190-238 1-45 (329)
350 PRK07667 uridine kinase; Provi 94.4 0.081 1.7E-06 55.8 6.4 37 197-237 3-39 (193)
351 cd02025 PanK Pantothenate kina 94.3 0.15 3.2E-06 54.8 8.3 21 217-237 1-21 (220)
352 cd03285 ABC_MSH2_euk MutS2 hom 94.3 0.018 3.9E-07 61.9 1.3 175 214-398 29-218 (222)
353 cd02019 NK Nucleoside/nucleoti 94.3 0.033 7.1E-07 47.1 2.6 22 217-238 1-22 (69)
354 PRK12723 flagellar biosynthesi 94.3 0.27 5.8E-06 57.2 10.8 89 214-306 173-265 (388)
355 TIGR02858 spore_III_AA stage I 94.2 0.18 3.8E-06 55.7 8.9 116 215-339 111-233 (270)
356 COG1136 SalX ABC-type antimicr 94.2 0.41 8.9E-06 50.6 11.1 61 282-342 147-210 (226)
357 cd03115 SRP The signal recogni 94.2 0.17 3.6E-06 52.4 8.4 21 217-237 2-22 (173)
358 COG1126 GlnQ ABC-type polar am 94.2 0.54 1.2E-05 48.4 11.3 124 215-341 28-202 (240)
359 PF13238 AAA_18: AAA domain; P 94.2 0.033 7.1E-07 54.5 2.8 21 218-238 1-21 (129)
360 PRK05201 hslU ATP-dependent pr 94.1 0.11 2.4E-06 59.8 7.1 50 188-237 15-72 (443)
361 KOG0728 26S proteasome regulat 94.1 1 2.2E-05 46.8 13.0 155 190-365 148-331 (404)
362 COG4618 ArpD ABC-type protease 94.1 0.31 6.7E-06 56.4 10.5 23 215-237 362-384 (580)
363 KOG1532 GTPase XAB1, interacts 94.1 0.19 4.2E-06 52.8 8.1 28 212-239 16-43 (366)
364 TIGR00382 clpX endopeptidase C 94.1 0.25 5.3E-06 57.9 10.1 51 187-237 76-138 (413)
365 TIGR00235 udk uridine kinase. 94.1 0.043 9.2E-07 58.8 3.6 24 214-237 5-28 (207)
366 PRK05439 pantothenate kinase; 94.1 0.28 6E-06 55.0 10.0 81 212-296 83-166 (311)
367 PRK05480 uridine/cytidine kina 94.0 0.045 9.7E-07 58.8 3.7 25 214-238 5-29 (209)
368 PTZ00035 Rad51 protein; Provis 94.0 0.35 7.5E-06 55.6 11.0 57 213-270 116-176 (337)
369 PF00006 ATP-synt_ab: ATP synt 94.0 0.14 3.1E-06 54.2 7.2 84 215-304 15-114 (215)
370 PF07726 AAA_3: ATPase family 93.9 0.027 5.9E-07 52.9 1.5 27 218-246 2-28 (131)
371 PRK06547 hypothetical protein; 93.9 0.074 1.6E-06 54.5 4.9 26 213-238 13-38 (172)
372 PF12775 AAA_7: P-loop contain 93.8 0.05 1.1E-06 60.4 3.6 95 197-312 22-117 (272)
373 TIGR00554 panK_bact pantothena 93.8 0.26 5.6E-06 54.9 9.1 80 213-295 60-141 (290)
374 KOG0473 Leucine-rich repeat pr 93.7 0.0037 8E-08 63.6 -4.8 86 591-677 37-122 (326)
375 PF08433 KTI12: Chromatin asso 93.7 0.095 2.1E-06 57.9 5.6 23 216-238 2-24 (270)
376 cd02027 APSK Adenosine 5'-phos 93.7 0.33 7.2E-06 48.6 9.0 22 217-238 1-22 (149)
377 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.38 8.1E-06 52.7 10.3 49 213-265 19-67 (237)
378 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.079 1.7E-06 59.2 4.8 51 187-237 60-110 (358)
379 PF00154 RecA: recA bacterial 93.7 0.11 2.3E-06 58.3 5.9 87 213-306 51-142 (322)
380 PTZ00494 tuzin-like protein; P 93.6 2.4 5.1E-05 48.6 15.9 169 184-364 367-543 (664)
381 cd01135 V_A-ATPase_B V/A-type 93.6 0.2 4.3E-06 54.6 7.5 91 214-304 68-175 (276)
382 COG4088 Predicted nucleotide k 93.6 0.21 4.4E-06 50.5 6.9 22 216-237 2-23 (261)
383 cd02024 NRK1 Nicotinamide ribo 93.6 0.1 2.2E-06 53.9 5.2 22 217-238 1-22 (187)
384 PRK06762 hypothetical protein; 93.5 0.058 1.2E-06 55.5 3.3 23 215-237 2-24 (166)
385 cd01121 Sms Sms (bacterial rad 93.5 0.41 8.8E-06 55.7 10.5 84 214-305 81-168 (372)
386 COG1428 Deoxynucleoside kinase 93.5 0.051 1.1E-06 55.6 2.7 24 215-238 4-27 (216)
387 PRK08533 flagellar accessory p 93.5 0.38 8.2E-06 52.2 9.7 48 215-266 24-71 (230)
388 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.28 6.2E-06 52.1 8.6 24 215-238 26-49 (200)
389 cd03282 ABC_MSH4_euk MutS4 hom 93.5 0.16 3.5E-06 53.7 6.6 122 215-343 29-159 (204)
390 PRK06002 fliI flagellum-specif 93.5 0.3 6.6E-06 57.3 9.3 85 215-304 165-263 (450)
391 KOG0736 Peroxisome assembly fa 93.5 0.73 1.6E-05 56.1 12.4 176 189-388 402-599 (953)
392 PRK10923 glnG nitrogen regulat 93.4 0.9 2E-05 55.9 14.2 46 189-238 139-184 (469)
393 PRK08972 fliI flagellum-specif 93.4 0.24 5.3E-06 57.8 8.4 85 214-304 161-261 (444)
394 TIGR01069 mutS2 MutS2 family p 93.4 0.069 1.5E-06 68.3 4.4 101 294-400 401-508 (771)
395 PTZ00088 adenylate kinase 1; P 93.4 0.074 1.6E-06 57.2 4.0 21 217-237 8-28 (229)
396 cd02028 UMPK_like Uridine mono 93.4 0.12 2.6E-06 53.6 5.4 22 217-238 1-22 (179)
397 PRK14723 flhF flagellar biosyn 93.4 0.5 1.1E-05 59.3 11.5 87 215-305 185-273 (767)
398 cd03215 ABC_Carb_Monos_II This 93.4 0.31 6.8E-06 50.9 8.6 24 215-238 26-49 (182)
399 PRK14721 flhF flagellar biosyn 93.4 0.36 7.7E-06 56.6 9.7 89 214-305 190-279 (420)
400 TIGR00708 cobA cob(I)alamin ad 93.4 0.35 7.7E-06 48.8 8.4 116 216-335 6-140 (173)
401 COG0396 sufC Cysteine desulfur 93.4 0.42 9.2E-06 49.6 9.0 61 286-346 153-215 (251)
402 TIGR03575 selen_PSTK_euk L-ser 93.4 0.19 4.2E-06 57.1 7.3 21 218-238 2-22 (340)
403 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.26 5.6E-06 50.1 7.7 117 216-341 26-146 (157)
404 PRK03839 putative kinase; Prov 93.3 0.058 1.3E-06 56.3 2.9 22 217-238 2-23 (180)
405 TIGR00150 HI0065_YjeE ATPase, 93.3 0.12 2.7E-06 49.7 4.8 40 195-238 6-45 (133)
406 cd03243 ABC_MutS_homologs The 93.2 0.085 1.8E-06 56.2 4.1 22 216-237 30-51 (202)
407 PRK13543 cytochrome c biogenes 93.2 0.78 1.7E-05 49.4 11.5 24 215-238 37-60 (214)
408 PRK00625 shikimate kinase; Pro 93.2 0.061 1.3E-06 55.1 2.8 21 217-237 2-22 (173)
409 PRK10463 hydrogenase nickel in 93.2 0.37 8E-06 53.2 8.9 25 213-237 102-126 (290)
410 PRK06217 hypothetical protein; 93.1 0.13 2.9E-06 53.7 5.4 22 217-238 3-24 (183)
411 PRK05342 clpX ATP-dependent pr 93.1 0.2 4.3E-06 59.0 7.3 51 187-237 70-130 (412)
412 TIGR01425 SRP54_euk signal rec 93.1 0.42 9E-06 56.1 9.7 26 213-238 98-123 (429)
413 cd03283 ABC_MutS-like MutS-lik 93.1 0.46 9.9E-06 50.2 9.3 22 216-237 26-47 (199)
414 PF06309 Torsin: Torsin; Inte 93.0 0.14 3E-06 48.2 4.6 46 190-238 27-76 (127)
415 cd02021 GntK Gluconate kinase 93.0 0.6 1.3E-05 47.0 9.8 22 217-238 1-22 (150)
416 PRK06995 flhF flagellar biosyn 93.0 0.56 1.2E-05 56.0 10.7 25 214-238 255-279 (484)
417 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.3 6.4E-06 54.2 8.0 42 213-256 34-75 (259)
418 TIGR01360 aden_kin_iso1 adenyl 93.0 0.082 1.8E-06 55.8 3.5 24 214-237 2-25 (188)
419 PRK09544 znuC high-affinity zi 92.9 0.55 1.2E-05 51.9 10.1 24 215-238 30-53 (251)
420 PRK04040 adenylate kinase; Pro 92.9 0.079 1.7E-06 55.3 3.2 22 216-237 3-24 (188)
421 COG1102 Cmk Cytidylate kinase 92.9 0.069 1.5E-06 51.8 2.4 43 217-272 2-44 (179)
422 PRK15453 phosphoribulokinase; 92.9 0.53 1.2E-05 51.4 9.4 24 214-237 4-27 (290)
423 KOG0739 AAA+-type ATPase [Post 92.8 2.6 5.6E-05 45.3 13.9 175 189-386 134-334 (439)
424 COG0714 MoxR-like ATPases [Gen 92.8 0.24 5.1E-06 57.4 7.3 63 190-265 26-88 (329)
425 PRK05917 DNA polymerase III su 92.7 1.2 2.6E-05 49.3 12.1 131 196-352 5-154 (290)
426 COG1066 Sms Predicted ATP-depe 92.7 0.28 6.1E-06 55.3 7.1 84 214-306 92-179 (456)
427 PF13504 LRR_7: Leucine rich r 92.7 0.065 1.4E-06 30.8 1.2 16 620-635 2-17 (17)
428 cd03280 ABC_MutS2 MutS2 homolo 92.6 0.073 1.6E-06 56.6 2.6 21 216-236 29-49 (200)
429 PRK12597 F0F1 ATP synthase sub 92.6 0.24 5.3E-06 58.5 7.1 90 214-304 142-246 (461)
430 PRK09519 recA DNA recombinatio 92.6 0.29 6.4E-06 61.5 8.1 86 213-305 58-148 (790)
431 cd03232 ABC_PDR_domain2 The pl 92.6 0.48 1E-05 49.9 8.8 23 215-237 33-55 (192)
432 PF13481 AAA_25: AAA domain; P 92.6 0.064 1.4E-06 56.9 2.1 42 216-257 33-82 (193)
433 PRK09280 F0F1 ATP synthase sub 92.6 0.41 9E-06 56.4 8.8 90 214-304 143-247 (463)
434 PF03308 ArgK: ArgK protein; 92.6 0.17 3.6E-06 54.0 5.1 40 196-239 14-53 (266)
435 cd01134 V_A-ATPase_A V/A-type 92.6 0.85 1.8E-05 51.3 10.7 59 199-266 146-205 (369)
436 PRK00889 adenylylsulfate kinas 92.6 0.11 2.3E-06 54.0 3.7 25 214-238 3-27 (175)
437 PRK10416 signal recognition pa 92.5 0.6 1.3E-05 53.1 9.8 25 214-238 113-137 (318)
438 PRK05973 replicative DNA helic 92.5 0.5 1.1E-05 50.8 8.6 48 214-265 63-110 (237)
439 PRK06731 flhF flagellar biosyn 92.5 0.8 1.7E-05 50.5 10.4 90 215-307 75-166 (270)
440 cd03284 ABC_MutS1 MutS1 homolo 92.5 0.097 2.1E-06 56.1 3.3 22 216-237 31-52 (216)
441 PRK07276 DNA polymerase III su 92.5 4.7 0.0001 45.0 16.4 71 293-364 102-174 (290)
442 PRK05986 cob(I)alamin adenolsy 92.5 0.31 6.7E-06 50.0 6.6 118 216-335 23-158 (191)
443 COG0467 RAD55 RecA-superfamily 92.5 0.14 3E-06 57.2 4.6 43 213-257 21-63 (260)
444 PRK15115 response regulator Gl 92.4 0.73 1.6E-05 56.2 11.3 46 189-238 135-180 (444)
445 KOG0743 AAA+-type ATPase [Post 92.4 1.8 3.8E-05 50.0 13.0 74 325-400 337-417 (457)
446 PRK10751 molybdopterin-guanine 92.4 0.13 2.9E-06 52.1 3.8 25 214-238 5-29 (173)
447 smart00534 MUTSac ATPase domai 92.4 0.14 3E-06 53.6 4.2 119 217-341 1-128 (185)
448 PRK00131 aroK shikimate kinase 92.3 0.099 2.2E-06 54.3 3.1 24 215-238 4-27 (175)
449 PRK04328 hypothetical protein; 92.3 0.36 7.8E-06 53.2 7.6 42 214-257 22-63 (249)
450 KOG4252 GTP-binding protein [S 92.3 0.36 7.8E-06 47.1 6.3 36 217-253 22-57 (246)
451 cd03244 ABCC_MRP_domain2 Domai 92.3 1 2.3E-05 48.7 11.2 24 215-238 30-53 (221)
452 cd03240 ABC_Rad50 The catalyti 92.3 0.62 1.3E-05 49.6 9.1 53 287-339 131-187 (204)
453 TIGR03740 galliderm_ABC gallid 92.3 1 2.2E-05 48.9 11.1 24 215-238 26-49 (223)
454 PRK12678 transcription termina 92.3 0.32 7E-06 57.8 7.3 90 214-304 415-512 (672)
455 TIGR03771 anch_rpt_ABC anchore 92.3 1.1 2.3E-05 48.7 11.1 24 215-238 6-29 (223)
456 cd02023 UMPK Uridine monophosp 92.3 0.086 1.9E-06 56.0 2.6 21 217-237 1-21 (198)
457 COG1124 DppF ABC-type dipeptid 92.3 0.16 3.4E-06 53.3 4.2 23 215-237 33-55 (252)
458 cd03233 ABC_PDR_domain1 The pl 92.2 0.88 1.9E-05 48.4 10.2 24 215-238 33-56 (202)
459 COG1120 FepC ABC-type cobalami 92.2 0.79 1.7E-05 49.6 9.6 23 215-237 28-50 (258)
460 cd03369 ABCC_NFT1 Domain 2 of 92.2 1.5 3.3E-05 46.8 12.2 23 215-237 34-56 (207)
461 COG0003 ArsA Predicted ATPase 92.2 0.2 4.4E-06 56.4 5.4 48 215-264 2-49 (322)
462 TIGR01359 UMP_CMP_kin_fam UMP- 92.2 0.089 1.9E-06 55.2 2.5 21 217-237 1-21 (183)
463 TIGR02322 phosphon_PhnN phosph 92.1 0.11 2.4E-06 54.2 3.1 23 216-238 2-24 (179)
464 TIGR02915 PEP_resp_reg putativ 92.1 0.86 1.9E-05 55.7 11.4 45 189-237 140-184 (445)
465 KOG0729 26S proteasome regulat 92.1 0.54 1.2E-05 49.2 7.8 55 189-245 178-239 (435)
466 TIGR03574 selen_PSTK L-seryl-t 92.1 0.32 7E-06 53.8 7.0 21 218-238 2-22 (249)
467 COG0465 HflB ATP-dependent Zn 92.1 0.63 1.4E-05 56.4 9.6 54 188-241 150-209 (596)
468 TIGR01420 pilT_fam pilus retra 92.1 0.22 4.7E-06 57.8 5.7 111 216-338 123-233 (343)
469 PTZ00185 ATPase alpha subunit; 92.0 0.59 1.3E-05 55.0 9.0 91 214-306 188-300 (574)
470 COG1936 Predicted nucleotide k 92.0 0.12 2.5E-06 51.1 2.8 20 217-236 2-21 (180)
471 COG4240 Predicted kinase [Gene 92.0 0.52 1.1E-05 48.4 7.4 84 213-297 48-135 (300)
472 PRK13947 shikimate kinase; Pro 92.0 0.1 2.2E-06 54.0 2.7 21 217-237 3-23 (171)
473 PRK13765 ATP-dependent proteas 92.0 0.24 5.2E-06 61.5 6.2 74 188-271 31-104 (637)
474 COG3640 CooC CO dehydrogenase 92.0 0.21 4.6E-06 51.9 4.7 42 217-259 2-43 (255)
475 KOG0727 26S proteasome regulat 91.9 0.28 6E-06 50.8 5.5 50 189-238 156-212 (408)
476 PF00625 Guanylate_kin: Guanyl 91.9 0.15 3.3E-06 53.3 3.9 37 215-253 2-38 (183)
477 cd00227 CPT Chloramphenicol (C 91.9 0.12 2.6E-06 53.6 3.1 23 216-238 3-25 (175)
478 TIGR03305 alt_F1F0_F1_bet alte 91.9 0.25 5.3E-06 58.1 5.9 90 214-304 137-241 (449)
479 COG2842 Uncharacterized ATPase 91.9 1.2 2.5E-05 48.6 10.4 96 216-320 95-190 (297)
480 cd01130 VirB11-like_ATPase Typ 91.9 0.24 5.3E-06 51.8 5.4 22 216-237 26-47 (186)
481 PRK00279 adk adenylate kinase; 91.9 0.53 1.1E-05 50.7 8.1 21 217-237 2-22 (215)
482 PRK08149 ATP synthase SpaL; Va 91.9 0.63 1.4E-05 54.6 9.1 85 214-304 150-250 (428)
483 KOG0735 AAA+-type ATPase [Post 91.8 1.9 4E-05 52.2 12.7 178 189-387 668-870 (952)
484 cd03213 ABCG_EPDR ABCG transpo 91.8 1 2.2E-05 47.6 10.1 24 215-238 35-58 (194)
485 COG1703 ArgK Putative periplas 91.8 0.2 4.4E-06 54.1 4.6 62 198-263 38-99 (323)
486 PLN02348 phosphoribulokinase 91.8 0.79 1.7E-05 52.7 9.5 25 213-237 47-71 (395)
487 PRK00409 recombination and DNA 91.8 0.12 2.6E-06 66.3 3.5 168 214-400 326-513 (782)
488 cd01129 PulE-GspE PulE/GspE Th 91.8 0.31 6.8E-06 54.0 6.3 81 216-307 81-161 (264)
489 cd00071 GMPK Guanosine monopho 91.8 0.13 2.7E-06 50.7 2.9 21 218-238 2-22 (137)
490 PRK03846 adenylylsulfate kinas 91.7 0.15 3.3E-06 54.1 3.7 25 213-237 22-46 (198)
491 KOG2170 ATPase of the AAA+ sup 91.7 0.21 4.6E-06 53.7 4.5 51 188-238 82-133 (344)
492 PRK13949 shikimate kinase; Pro 91.7 0.12 2.7E-06 52.9 2.8 22 217-238 3-24 (169)
493 cd01136 ATPase_flagellum-secre 91.7 0.85 1.9E-05 51.6 9.6 84 215-304 69-168 (326)
494 TIGR03522 GldA_ABC_ATP gliding 91.7 1.6 3.5E-05 49.8 12.1 24 215-238 28-51 (301)
495 PRK06793 fliI flagellum-specif 91.7 0.64 1.4E-05 54.6 8.9 90 214-306 155-257 (432)
496 PRK11388 DNA-binding transcrip 91.6 0.5 1.1E-05 60.4 8.9 130 189-334 326-466 (638)
497 PF03205 MobB: Molybdopterin g 91.6 0.2 4.3E-06 49.3 4.1 39 216-255 1-39 (140)
498 TIGR03881 KaiC_arch_4 KaiC dom 91.6 0.95 2.1E-05 49.4 9.9 41 214-256 19-59 (229)
499 cd02020 CMPK Cytidine monophos 91.6 0.12 2.6E-06 51.9 2.5 21 217-237 1-21 (147)
500 PF13245 AAA_19: Part of AAA d 91.5 0.3 6.4E-06 42.1 4.5 21 216-236 11-31 (76)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-84 Score=800.45 Aligned_cols=652 Identities=30% Similarity=0.473 Sum_probs=511.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccc
Q 037733 25 IRLFARQQQIQADLMKWKKMLVMIKAVLDDAEEKKTADQSVKLWLGELQNLAYDVEDLMDEFQTEALRRKLLLRNRDPAA 104 (1450)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~ 104 (1450)
..++....+.++.+..|++.|..++.+++||+.++.....+..|.+.++|++|++||.++.|.......+..+.
T Consensus 17 ~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~------ 90 (889)
T KOG4658|consen 17 NRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL------ 90 (889)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------
Confidence 34455566888899999999999999999999999888899999999999999999999999998776543320
Q ss_pred ccCCCCCccccccccccccccccccCCCCchhhhHHHHHHHHHHHHHHHHHHhccccCCccccCCCCC--CCCCCCCCcc
Q 037733 105 ALDQPSSSRTRTSKFRKLIPTCCTTFTPQSIQFDYAMMSKIKEINERFQAIVTQKDSLGLNVSSAGRS--KKSSQRLPTT 182 (1450)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 182 (1450)
..+ .....+.+ |. ..+++..+..+..+.+++..+.+.+..++......... .......++.
T Consensus 91 -------l~~-~~~~~~~~--c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~ 153 (889)
T KOG4658|consen 91 -------LST-RSVERQRL--CL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR 153 (889)
T ss_pred -------hhh-hHHHHHHH--hh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence 000 00011111 21 12344555556666666666666665555332111111 1111222344
Q ss_pred CCCCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc-ccccCCcEEEEEeCCccCHHH
Q 037733 183 SLVNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR-VQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
+...... ||.+..++++.+.|.+++ ..+++|+||||+||||||+.++|+.. ++.+|+.++||.||+.++...
T Consensus 154 ~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~ 226 (889)
T KOG4658|consen 154 PIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK 226 (889)
T ss_pred CCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh
Confidence 4444444 999999999999998764 28999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHh
Q 037733 262 LTKAILTSIVAGQNV-DNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEI 340 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~ 340 (1450)
++++|+..++..... .....++.+..+.+.|++|||+||+||||++ .+|+.+..++|....||||++|||++.|+..
T Consensus 227 iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 227 IQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 999999999874432 2333478899999999999999999999998 7799999999999899999999999999988
Q ss_pred -cCCCCceeCCCCCHHHHHHHHHhccCCCC-c---hhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhcccc
Q 037733 341 -MGTVPPHPLKELSDNDCLAIFAQHSLGPR-E---LLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSKIW 415 (1450)
Q Consensus 341 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~---~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~ 415 (1450)
+++...++++.|+++|||+||.+.++... . ..+++|++|+++|+|+|||++++|+.|+.|+..++|+++.+...+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 78888999999999999999999998652 2 479999999999999999999999999999999999999987655
Q ss_pred cC----CccccChhhHHHHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHHHHHH
Q 037733 416 EL----PEERCGIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFFKELY 491 (1450)
Q Consensus 416 ~~----~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~ 491 (1450)
.. ++..+.++++|++||+.||+++|.||+|||+||+||+|+++.++.+|+||||+++..++.++++.|++|+.+|+
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 52 23356799999999999999999999999999999999999999999999999987778899999999999999
Q ss_pred hcCCCcccC--CCCCcEEEcHHHHHHHHHhhc-----cceEEeccCcccc--cccccCCCeeEEEEEccccccccccccc
Q 037733 492 SRSFFQQSS--NNTSRFVMHDLINDLAKWAAG-----EIHFTMENTSEVN--KQQSFSKNLRHLSYIGGACDGVKRFGNL 562 (1450)
Q Consensus 492 ~~~l~~~~~--~~~~~~~mHdlv~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~r~ls~~~~~~~~~~~~~~~ 562 (1450)
+|+|++... ++...|+|||+|||+|.|+++ ++..++....+.. ........+|+++++...... ....
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~ 541 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGS 541 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCC
Confidence 999999765 456789999999999999999 5554444321111 112223567999988764322 2333
Q ss_pred ccccceeEEeeccccCCCCCchhHHHHHHHh-ccccccEEEecCCC-CCcCCcCccCCCccceeeccCCCcccccccccc
Q 037733 563 VDIQHLRTFLPVMLSNSSPGYLARSILRKLL-KLQRLRVFSLCGYH-ISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNK 640 (1450)
Q Consensus 563 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~-i~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~ 640 (1450)
..++.++||+...... -...+...++ .++.||||||++|. +.++|++|++|.|||||+|++|.|+.||.++++
T Consensus 542 ~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred CCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 4566899998775421 1233444555 89999999999876 899999999999999999999999999999999
Q ss_pred cCCccEEecCCCCchhHhhhhhhhhcccCcccccCCCCCccCCCCCCCcccccccCceeccCCCCCCchhccccccC
Q 037733 641 LYNLHTLLLNDCHQLKKLCADMEDLIRLHHLKNSNTHSLEEMPLGIGKLTCLQTLCNFVVGKDSGSGLRELKSLMHL 717 (1450)
Q Consensus 641 L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L 717 (1450)
|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....+...+..+..+..|
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHH
Confidence 9999999999988887887777789999999987654 222223356667777776665544333223334333333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-60 Score=631.09 Aligned_cols=307 Identities=23% Similarity=0.314 Sum_probs=245.7
Q ss_pred CCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe---CCc-----
Q 037733 185 VNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV---SDD----- 256 (1450)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~----- 256 (1450)
.+...+|||+++++++.++|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34466999999999999988543 34689999999999999999999999 67888998887642 111
Q ss_pred ------cC-HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 037733 257 ------FD-VIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII 329 (1450)
Q Consensus 257 ------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 329 (1450)
++ ...++++++.++........... ..+++.+++||+||||||||+. ..|+.+.....+.++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 22455566666544332222222 4567788999999999999986 77888877666678899999
Q ss_pred EecCchHHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCC---chhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHH
Q 037733 330 VTTRNHEVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPR---ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVW 406 (1450)
Q Consensus 330 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w 406 (1450)
||||+++++..++....|+++.+++++||+||+++||+.. +.+.+++++|+++|+|+||||+++|++|+++ +..+|
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDW 407 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHH
Confidence 9999999998877778999999999999999999998743 2678899999999999999999999999987 67899
Q ss_pred HHHHhcccccCCccccChhhHHHHhhcCCCh-hHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHH
Q 037733 407 EGVLSSKIWELPEERCGIIPALAVSYYYLPP-TLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRD 485 (1450)
Q Consensus 407 ~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 485 (1450)
+.++++..+... ..|.++|++||++|++ ..|.||+++|+|+.+..++ .+..|.|.+.... +.
T Consensus 408 ~~~l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~ 470 (1153)
T PLN03210 408 MDMLPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NI 470 (1153)
T ss_pred HHHHHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hh
Confidence 999987655332 4699999999999986 5999999999999987554 4677777665431 22
Q ss_pred HHHHHHhcCCCcccCCCCCcEEEcHHHHHHHHHhhccce
Q 037733 486 FFKELYSRSFFQQSSNNTSRFVMHDLINDLAKWAAGEIH 524 (1450)
Q Consensus 486 ~~~~L~~~~l~~~~~~~~~~~~mHdlv~~~~~~~~~~~~ 524 (1450)
.++.|+++||++... .++.|||++|+||++++.++.
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhc
Confidence 388999999998753 469999999999999987653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-40 Score=443.71 Aligned_cols=323 Identities=18% Similarity=0.162 Sum_probs=252.9
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
++|++|++++|.+.+.+|..+.++++|+.|++++|.+....+ .+..+++|+.|++++|.+...+|..+ ..+++|+.|
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEE
Confidence 467778888888877788888888888888888888776655 56677888888888888766666655 367778888
Q ss_pred EeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEE
Q 037733 1117 CVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIR 1196 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 1196 (1450)
++++|.+.+..+. .+... ++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 362 ~Ls~n~l~~~~p~-------------------------~~~~~------~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 362 DLSTNNLTGEIPE-------------------------GLCSS------GNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred ECCCCeeEeeCCh-------------------------hHhCc------CCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 8887776543221 11111 4677888888888877888888888888888
Q ss_pred eecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcc
Q 037733 1197 IYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLV 1276 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1276 (1450)
+++|.+.+.+|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.+.+
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSG 489 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCC
Confidence 88888888888888888888888888888888877777788888888888888887777654 45788888898888888
Q ss_pred ccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCc
Q 037733 1277 SFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPA 1356 (1450)
Q Consensus 1277 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1450)
..|..+..+++|+.|++++|.+.+.+|..+.++++|++|+|++|. +.+ .+|. .+..++
T Consensus 490 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------l~~------~~p~---------~~~~l~ 547 (968)
T PLN00113 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ-------LSG------QIPA---------SFSEMP 547 (968)
T ss_pred ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc-------ccc------cCCh---------hHhCcc
Confidence 888888888888889999888888888888888889999988883 222 2232 234567
Q ss_pred ccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhh
Q 037733 1357 SLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLI 1416 (1450)
Q Consensus 1357 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 1416 (1450)
+|++|+|++|.+.+.+|..+..+++|++|++++|++...+|..+.+.++....+.+|+..
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 889999999988888898899999999999999988888887766667777777888754
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.7e-41 Score=383.73 Aligned_cols=275 Identities=38% Similarity=0.627 Sum_probs=225.7
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhc
Q 037733 193 REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVA 272 (1450)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1450)
||.++++|.++|.... ...++|+|+||||+||||||++++++.+++.+|+.++|+.++...+..+++.+|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 468999999999999999999999976789999999999999999999999999999987
Q ss_pred CCCC--CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhcCC-CCceeC
Q 037733 273 GQNV--DNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMGT-VPPHPL 349 (1450)
Q Consensus 273 ~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~-~~~~~l 349 (1450)
.... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7431 4567888999999999999999999999987 6898888888777789999999999988876654 578999
Q ss_pred CCCCHHHHHHHHHhccCCCC----chhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhcccccCC---cccc
Q 037733 350 KELSDNDCLAIFAQHSLGPR----ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSKIWELP---EERC 422 (1450)
Q Consensus 350 ~~L~~~~~~~lf~~~~~~~~----~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~---~~~~ 422 (1450)
++|+++||++||.+.++... ...++.+++|+++|+|+||||+++|++|+.+.....|+++++...+... +...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987644 3567889999999999999999999999766567889988876444432 2346
Q ss_pred ChhhHHHHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCC
Q 037733 423 GIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHK 473 (1450)
Q Consensus 423 ~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 473 (1450)
.+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+++|||...
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 789999999999999999999999999999999999999999999999753
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.3e-39 Score=428.83 Aligned_cols=324 Identities=20% Similarity=0.240 Sum_probs=270.3
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
++|++|++++|.+.+.+|..+..+++|++|++++|.+...++ .+..+++|+.|++++|.+....|..+ ..+++|+.|
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L 337 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVL 337 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEE
Confidence 456677777777777777777788888888888887766555 45667778888888877766666555 367777777
Q ss_pred EeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEE
Q 037733 1117 CVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIR 1196 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 1196 (1450)
++++|.+.+..+ ..+..+ ++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 338 ~L~~n~l~~~~p-------------------------~~l~~~------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 338 QLWSNKFSGEIP-------------------------KNLGKH------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred ECcCCCCcCcCC-------------------------hHHhCC------CCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 777776653222 111122 5889999999999888888888999999999
Q ss_pred eecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcc
Q 037733 1197 IYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLV 1276 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1276 (1450)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 99999999999999999999999999999999999999999999999999999999888888899999999999999998
Q ss_pred ccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCc
Q 037733 1277 SFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPA 1356 (1450)
Q Consensus 1277 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1450)
.+|..+. .++|+.|++++|++.+.+|..+.++++|+.|++++|. +.+ .+|.. +..++
T Consensus 467 ~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~------~~p~~---------~~~l~ 523 (968)
T PLN00113 467 GLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-------LSG------EIPDE---------LSSCK 523 (968)
T ss_pred ecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCc-------cee------eCChH---------HcCcc
Confidence 8887654 4899999999999999999999999999999999993 222 34433 34568
Q ss_pred ccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCccccccccccCChhhH
Q 037733 1357 SLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1357 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~ 1417 (1450)
+|++|++++|.+.+.+|..+..+++|++|+|++|++...+|.. ..+++|+.|++++|++++
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999999999999999999988888875 678899999999999875
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3e-28 Score=268.25 Aligned_cols=345 Identities=15% Similarity=0.097 Sum_probs=238.0
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCC-CCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALP-SKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
|+.-+.|++++|.+...-+..|.++++|+++.+.+|.+. .+|.++.. .+|+.|+|.+|.+.+.-...+ +-++.|+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHH--HhHhhhhh
Confidence 455677899998888777778888999999999888765 45555544 458889998888655544444 36788899
Q ss_pred EEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccE
Q 037733 1116 LCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLER 1194 (1450)
Q Consensus 1116 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1194 (1450)
|||+.|.+.+... .+..-+++++|+++++ .++++.. ..+.++ .+|..|.|+.|.++...+..|.++++|+.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~-~~F~~l------nsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLET-GHFDSL------NSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-ccccccc-cccccc------chheeeecccCcccccCHHHhhhcchhhh
Confidence 9999888876432 2223367888888874 3332221 122222 47888888888888888888888888888
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
|+|..|.+...--..|.++++|+.|.+..|.+...-...|..+.++++|+|..|++...-..++.++++|+.|++++|.+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 88888887644345677888888888888887765556777888888888888887776667788888888888888888
Q ss_pred ccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCC
Q 037733 1275 LVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPL 1354 (1450)
Q Consensus 1275 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1354 (1450)
...-++.+.-+++|+.|+|++|++....+..|..+..|++|+|++|. +..+.+ .+|..
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns--------------i~~l~e--------~af~~ 363 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS--------------IDHLAE--------GAFVG 363 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc--------------hHHHHh--------hHHHH
Confidence 77767666667888888888888887777777778888888888873 111111 12334
Q ss_pred CcccceeeccccCCCcccc---ccCCCCCCCCeeeccCCCCCCCCCCC--CCccccccccccCChh
Q 037733 1355 PASLTSLGISRFPNLERLS---SSIVDLQNLTELIIEDCPKLKYFPEK--GLPSSLLRLRLERCPL 1415 (1450)
Q Consensus 1355 ~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~l~~n~l 1415 (1450)
..+|+.|||++|.+...+. ..|..+++|+.|++.+| .++.+|.. ..+++|+.||+.+|++
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 4555555555555433332 23445555555555555 34555443 3445555555555555
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-27 Score=262.90 Aligned_cols=364 Identities=16% Similarity=0.155 Sum_probs=280.2
Q ss_pred ccccccccccccccchhcccccccccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcc
Q 037733 978 KLEELELNNIQEQSYIWKSHNGLLQDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQS 1057 (1450)
Q Consensus 978 ~L~~L~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~ 1057 (1450)
.-+.|++++ +.+......++.++++|+++.+... .|+.++-. .....+|+.|+|.+|.+...-.+.
T Consensus 79 ~t~~Ldlsn----Nkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f---------~~~sghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 79 QTQTLDLSN----NKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRF---------GHESGHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ceeeeeccc----cccccCcHHHHhcCCcceeeeeccc-hhhhcccc---------cccccceeEEeeeccccccccHHH
Confidence 344566543 2223334456678888888888653 34444322 222356999999999998777778
Q ss_pred cCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCC
Q 037733 1058 SLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPS 1135 (1450)
Q Consensus 1058 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~ 1135 (1450)
+..++.|+.|||+.|.+.+... .+..-.++++|+|++|.++..-...| .++.+|..|.|+.|.++.... .+..++.
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCcccccCHHHhhhcch
Confidence 8889999999999998775432 55556789999999999766555555 478899999999999987665 4455889
Q ss_pred ccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCC
Q 037733 1136 LKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQ 1215 (1450)
Q Consensus 1136 L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 1215 (1450)
|+.|++..+ .++.. -.-.+..+ ++|+.|.+..|.+...-.+.|-.+.++++|+|+.|++...-..++.++++
T Consensus 223 L~~LdLnrN-~iriv-e~ltFqgL------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 223 LESLDLNRN-RIRIV-EGLTFQGL------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred hhhhhcccc-ceeee-hhhhhcCc------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 999988773 22211 11123333 68999999999998877788888999999999999988777788889999
Q ss_pred CcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeecc
Q 037733 1216 LREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISY 1295 (1450)
Q Consensus 1216 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 1295 (1450)
|+.|++|+|.+...-++.+.-+++|++|+|++|.+...-+..|..+..|++|+|++|.+...-...|..+++|+.|||++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 99999999999888888888999999999999998887778888999999999999988755555666788999999999
Q ss_pred CCCcccCc---ccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccc
Q 037733 1296 CKRLQALP---KGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERL 1372 (1450)
Q Consensus 1296 n~~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 1372 (1450)
|.+...+. ..|..+++|+.|++.||. +.++|. .+|..+++|++|+|.+|.+-++-
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNq--------------lk~I~k--------rAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQ--------------LKSIPK--------RAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCce--------------eeecch--------hhhccCcccceecCCCCcceeec
Confidence 99876542 357789999999999983 445554 46677889999999999888888
Q ss_pred cccCCCCCCCCeeecc
Q 037733 1373 SSSIVDLQNLTELIIE 1388 (1450)
Q Consensus 1373 ~~~~~~l~~L~~L~l~ 1388 (1450)
|..|..+ .|+.|.+.
T Consensus 433 ~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMN 447 (873)
T ss_pred ccccccc-hhhhhhhc
Confidence 8888888 88888665
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=5.5e-30 Score=269.93 Aligned_cols=97 Identities=28% Similarity=0.447 Sum_probs=76.8
Q ss_pred cccEEEecCCCCCcCCcCccCCCccceeeccCCCcccccccccccCCccEEecCCCCchhHhhhhhhhhcccCcccccCC
Q 037733 597 RLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHHLKNSNT 676 (1450)
Q Consensus 597 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~~ 676 (1450)
-|..|++++|.+..+.+.+.+|..|.+|++.+|++.++|.+|+++..++.|+.++ +++.++|+.++.+.+|++|+.+.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccc
Confidence 3556677788887776678888888888888888888888888888888888887 577888888888888888888887
Q ss_pred CCCccCCCCCCCccccccc
Q 037733 677 HSLEEMPLGIGKLTCLQTL 695 (1450)
Q Consensus 677 ~~l~~lp~~i~~L~~L~~L 695 (1450)
. +.++|++|+.+-.|..|
T Consensus 125 ~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred c-eeecCchHHHHhhhhhh
Confidence 7 77788777777666665
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=8.2e-28 Score=280.27 Aligned_cols=269 Identities=20% Similarity=0.180 Sum_probs=154.2
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
+.+|+++++++|.+. .+|.++..+.+|+.+.+.+|.+......+....+|+.|.+.+|. +..+|... ..+.+|++|
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence 468999999999885 56789999999999999999886444466777889999999988 45555544 368899999
Q ss_pred EeeccCCcccccCCC-CC-CCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccE
Q 037733 1117 CVLHCQLLTYIAGVQ-LP-PSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLER 1194 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~~-~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1194 (1450)
+|..|.+...+..+. .+ .+|+.|+.+.. .+.... . ..+...+.|+.|.+.+|.+.....+.+.+.++|+.
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp--~-----~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLP--S-----YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhc-cccccc--c-----ccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 999998875443111 11 11333333321 111111 0 00112245666666666665555455555666666
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
|+|++|++.......+.+++.|++|+||||.+.. +|....++..|++|...+|.+. ..| .+..+++|+.+|++.|++
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 6666665554333445556666666666665543 4455555556666655555532 334 455556666666666555
Q ss_pred ccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1275 LVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1275 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
....-....+-++|++||+++|.-....-..|..+.++...+++-|
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 4432222222255666666665543322233444444444444433
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=4.7e-27 Score=274.03 Aligned_cols=99 Identities=35% Similarity=0.449 Sum_probs=91.2
Q ss_pred cccccEEEecCCCCCcCCcCccCCCccceeeccCCCcccccccccccCCccEEecCCCCchhHhhhhhhhhcccCccccc
Q 037733 595 LQRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHHLKNS 674 (1450)
Q Consensus 595 ~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 674 (1450)
.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+ +.+..+|.++..+++|+.|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccc
Confidence 334999999999999999999999999999999999999999999999999999996 7999999999999999999999
Q ss_pred CCCCCccCCCCCCCccccccc
Q 037733 675 NTHSLEEMPLGIGKLTCLQTL 695 (1450)
Q Consensus 675 ~~~~l~~lp~~i~~L~~L~~L 695 (1450)
+|. +..+|.-|..++.+.++
T Consensus 123 ~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 123 FNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhc-cCCCchhHHhhhHHHHH
Confidence 998 88888877777766665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2.6e-27 Score=249.94 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=96.1
Q ss_pred HHHHhccccccEEEecCCCCCcCCcCccCCCccceeeccCCCcccccccccccCCccEEecCCCCchhHhhhhhhhhccc
Q 037733 589 LRKLLKLQRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRL 668 (1450)
Q Consensus 589 ~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L 668 (1450)
.+++.++..|.||++.+|.+..+|.+|+.+..++.|+.++|++.++|+.++.+..|..|+.++ +.+.++|++|+.+..|
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDL 139 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhh
Confidence 445668889999999999999999999999999999999999999999999999999999998 6789999999999999
Q ss_pred CcccccCCCCCccCCCCCCCccccccc
Q 037733 669 HHLKNSNTHSLEEMPLGIGKLTCLQTL 695 (1450)
Q Consensus 669 ~~L~l~~~~~l~~lp~~i~~L~~L~~L 695 (1450)
..|+..+|. +..+|.+++.+.+|..|
T Consensus 140 ~dl~~~~N~-i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 140 EDLDATNNQ-ISSLPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHh
Confidence 999999887 89999998888777665
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.4e-25 Score=248.30 Aligned_cols=344 Identities=18% Similarity=0.213 Sum_probs=251.3
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCC-CCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALK-SLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~l~~L~~ 1115 (1450)
+++++-|.|...++ ..+|..++.+.+|++|.+++|++......+..++.|+.+.+..|++-. .+|..++ .+..|..
T Consensus 31 Mt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc--cccccee
Confidence 35677787777665 567888888888888888888888777788888888888888887543 3666665 7888888
Q ss_pred EEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEE
Q 037733 1116 LCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERI 1195 (1450)
Q Consensus 1116 L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1195 (1450)
||||+|++...+..+....++-.|+++++ ++.+++- ..+.++ ..|-.|||++|.+. .+|+....+..|++|
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn-~lfinL------tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPN-SLFINL------TDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCc-hHHHhh------HhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 88888888877666677777777888773 3332221 111222 35667888877654 455566777888888
Q ss_pred EeecccCccccCccccCCCCCcEEEEccCCCc-cchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1196 RIYFCENLKNLPSGLHNLRQLREIRISLCSKL-ESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1196 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
.|++|.+...--..+-.+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|. +..+|+.+..+++|+.|+||+|.+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCce
Confidence 88888776432233345667777777775544 4577778888888888888887 556788888888888888888887
Q ss_pred ccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCC
Q 037733 1275 LVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPL 1354 (1450)
Q Consensus 1275 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1354 (1450)
+. +........+|++|++|.|+++. +|..+..++.|+.|++.+|. +.+.| +|..++ .
T Consensus 258 te-L~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~Nk-----L~FeG-------iPSGIG---------K 314 (1255)
T KOG0444|consen 258 TE-LNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNK-----LTFEG-------IPSGIG---------K 314 (1255)
T ss_pred ee-eeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCc-----ccccC-------Cccchh---------h
Confidence 54 22233334688888888888765 78888888999999888883 34444 444443 3
Q ss_pred CcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhH
Q 037733 1355 PASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1355 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 1417 (1450)
+..|+.+..++|. +...|+++..|..|++|.|++|.+++.......++-|+.||++.||-+-
T Consensus 315 L~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 315 LIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 4588888888875 7888999999999999999999776665555888999999999998643
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.7e-25 Score=245.99 Aligned_cols=360 Identities=18% Similarity=0.203 Sum_probs=283.3
Q ss_pred cccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCcc--cc
Q 037733 1001 LQDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLV--SF 1078 (1450)
Q Consensus 1001 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~ 1078 (1450)
...++.++-|.+.. ..|..++.+- ..+.+|++|.+++|++. .+...+..++.|+.+++.+|.+.. ..
T Consensus 28 v~qMt~~~WLkLnr-t~L~~vPeEL---------~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP 96 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNR-TKLEQVPEEL---------SRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIP 96 (1255)
T ss_pred HHHhhheeEEEech-hhhhhChHHH---------HHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCC
Confidence 45677777777755 3455554432 22468999999999984 556678899999999999997753 33
Q ss_pred CCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccc
Q 037733 1079 PEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLE 1157 (1450)
Q Consensus 1079 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 1157 (1450)
+.+..+..|..|+|++|+ +...|..+ ....++-.|+||+|.+.+.+. .+.++..|-.|+++++ .+. .+|....
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe--~LPPQ~R 170 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLE--MLPPQIR 170 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhh--hcCHHHH
Confidence 477889999999999998 56777766 367889999999999987654 3345677788888873 344 3444444
Q ss_pred cccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCc-cccCccccCCCCCcEEEEccCCCccchhcccCC
Q 037733 1158 SLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENL-KNLPSGLHNLRQLREIRISLCSKLESIAERLDN 1236 (1450)
Q Consensus 1158 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 1236 (1450)
.+ ..|++|+|++|++...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+++|.|.+. .+|+.+.+
T Consensus 171 RL------~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 171 RL------SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred HH------hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 44 58999999999998766566777889999999987765 457889999999999999999876 57889999
Q ss_pred CCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc-CcccccCCCCCceE
Q 037733 1237 NTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA-LPKGLHNLTSLQEL 1315 (1450)
Q Consensus 1237 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L 1315 (1450)
+++|+.|+|++|.+.. +.-....+.+|++|++|+|.++ .+|..+..++.|+.|.+.+|++.-. +|+.++.+.+|+.+
T Consensus 244 l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 9999999999999654 3345667889999999999875 8899999999999999999998754 89999999999999
Q ss_pred EEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCC
Q 037733 1316 RIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1316 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1395 (1450)
..++|. +.-.|+.+. -+..|+.|.|+.|.++ .+|+.+.-++.|+.||+++|+.+--
T Consensus 322 ~aanN~--------------LElVPEglc---------RC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 322 HAANNK--------------LELVPEGLC---------RCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred Hhhccc--------------cccCchhhh---------hhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence 999983 455666553 4578999999999854 5899999999999999999998877
Q ss_pred CCCCCC-ccccccccc
Q 037733 1396 FPEKGL-PSSLLRLRL 1410 (1450)
Q Consensus 1396 ~~~~~~-~~~L~~L~l 1410 (1450)
.|.... -++|+.-+|
T Consensus 378 PPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 378 PPKPNDARKKLEFYNI 393 (1255)
T ss_pred CCCcchhhhcceeeec
Confidence 765422 244444333
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.1e-20 Score=252.40 Aligned_cols=349 Identities=23% Similarity=0.306 Sum_probs=264.1
Q ss_pred cccccccCccEEEeecCC--CcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCcc
Q 037733 999 GLLQDICSLKRLMIGWCP--KLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLV 1076 (1450)
Q Consensus 999 ~~~~~~~~L~~L~l~~c~--~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 1076 (1450)
..+..+++|+.|.+.... ...... ......+..++++|+.|++.++.+ ..+|..+ .+.+|+.|++++|.+..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~----~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVR----WHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred HHHhcCccccEEEEecccccccccce----eecCcchhhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCccccc
Confidence 346789999999886432 111000 000112334567899999999876 5667666 57899999999998765
Q ss_pred ccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccc
Q 037733 1077 SFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAK 1155 (1450)
Q Consensus 1077 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~ 1155 (1450)
.......+++|+.|++++|..+..+|.. ..+++|+.|++++|.....++ .+..+++|+.|++++|+++..+...
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-- 700 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-- 700 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--
Confidence 5456778899999999999877777752 478999999999987665544 5567889999999999888754322
Q ss_pred cccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCcc-------
Q 037733 1156 LESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLE------- 1228 (1450)
Q Consensus 1156 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~------- 1228 (1450)
. . +++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+++|++|.+.++....
T Consensus 701 i-~------l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 701 I-N------LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred C-C------CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccc
Confidence 1 2 268999999999887777653 468999999999865 466554 67889999888754321
Q ss_pred chhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccC
Q 037733 1229 SIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHN 1308 (1450)
Q Consensus 1229 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 1308 (1450)
..+.....+++|+.|++++|+....+|..+.++++|+.|++++|...+.+|... ++++|+.|++++|.....+|..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--- 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--- 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---
Confidence 112223345789999999999888899999999999999999998888888766 6789999999999877766543
Q ss_pred CCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeecc
Q 037733 1309 LTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIE 1388 (1450)
Q Consensus 1309 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 1388 (1450)
.++|+.|+|++|. +..+|..+ ..+++|++|++++|+.+..+|..+..+++|+.|+++
T Consensus 845 ~~nL~~L~Ls~n~--------------i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 845 STNISDLNLSRTG--------------IEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ccccCEeECCCCC--------------CccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 4689999999883 44555433 356789999999999999999888999999999999
Q ss_pred CCCCCCCCC
Q 037733 1389 DCPKLKYFP 1397 (1450)
Q Consensus 1389 ~n~~~~~~~ 1397 (1450)
+|..++.++
T Consensus 902 ~C~~L~~~~ 910 (1153)
T PLN03210 902 DCGALTEAS 910 (1153)
T ss_pred CCccccccc
Confidence 998776554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.4e-15 Score=186.73 Aligned_cols=259 Identities=22% Similarity=0.246 Sum_probs=150.6
Q ss_pred CccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEe
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCV 1118 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l 1118 (1450)
.-..|+++++.+. .+|..+. ++|+.|++.+|.+.. +|. .+++|++|++++|.+. .+|. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccC-cccC-----cccccceeec
Confidence 4567888888775 5666554 478888888876653 332 3567777777777643 3442 2356666666
Q ss_pred eccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEee
Q 037733 1119 LHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIY 1198 (1450)
Q Consensus 1119 ~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 1198 (1450)
++|.+..... .++ +|+.|++++|.+... |. .+++|+.|+++
T Consensus 270 s~N~L~~Lp~---lp~--------------------------------~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS 310 (788)
T PRK15387 270 FSNPLTHLPA---LPS--------------------------------GLCKLWIFGNQLTSL-PV---LPPGLQELSVS 310 (788)
T ss_pred cCCchhhhhh---chh--------------------------------hcCEEECcCCccccc-cc---cccccceeECC
Confidence 6665543211 223 444455555544321 21 13456666666
Q ss_pred cccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcccc
Q 037733 1199 FCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSF 1278 (1450)
Q Consensus 1199 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1278 (1450)
+|++.+ +|.. ..+|+.|++++|.+.+ +|.. ..+|+.|+|++|++.. +|.. .++|+.|++++|.+. .+
T Consensus 311 ~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~L 377 (788)
T PRK15387 311 DNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SL 377 (788)
T ss_pred CCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cC
Confidence 665553 2321 2345566666666553 3321 1356777777766543 3432 245666777776654 34
Q ss_pred CCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCccc
Q 037733 1279 PEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASL 1358 (1450)
Q Consensus 1279 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 1358 (1450)
|.. ..+|+.|++++|++.. +|.. .++|+.|++++|. +.++|. .+.+|
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~--------------LssIP~------------l~~~L 424 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR--------------LTSLPM------------LPSGL 424 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCc--------------CCCCCc------------chhhh
Confidence 432 1467777777777664 4432 2567777887773 223332 23467
Q ss_pred ceeeccccCCCccccccCCCCCCCCeeeccCCCCCCC
Q 037733 1359 TSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1359 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1395 (1450)
+.|++++|.+ +.+|..+..+++|+.|+|++|++...
T Consensus 425 ~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 425 LSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhccCcc-cccChHHhhccCCCeEECCCCCCCch
Confidence 7788888774 46777788888888888888876654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.7e-15 Score=182.98 Aligned_cols=259 Identities=23% Similarity=0.207 Sum_probs=179.5
Q ss_pred CcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEE
Q 037733 1062 SSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDI 1141 (1450)
Q Consensus 1062 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 1141 (1450)
..-..|+++++.+...++.+ .++|+.|++.+|++. .+|. .+++|++|++++|.+...
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l--~~~L~~L~L~~N~Lt-~LP~-----lp~~Lk~LdLs~N~LtsL--------------- 257 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSL--------------- 257 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch--hcCCCEEEccCCcCC-CCCC-----CCCCCcEEEecCCccCcc---------------
Confidence 34556777777665322222 346777777776633 3342 235555555555544321
Q ss_pred eCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEE
Q 037733 1142 YGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRI 1221 (1450)
Q Consensus 1142 ~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 1221 (1450)
| ..|++|++|++++|.+.. +|. .+++|+.|++++|.+.. +|. .+++|+.|++
T Consensus 258 -----------P---------~lp~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL 309 (788)
T PRK15387 258 -----------P---------VLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 309 (788)
T ss_pred -----------c---------CcccccceeeccCCchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence 1 023578888888887653 333 23679999999998874 454 3578999999
Q ss_pred ccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1222 SLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1222 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
++|.+.+ +|.. ..+|+.|++++|.+.. +|. ...+|+.|++++|.+. .+|.. ..+|+.|++++|.+..
T Consensus 310 S~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~- 376 (788)
T PRK15387 310 SDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS- 376 (788)
T ss_pred CCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-
Confidence 9998875 4432 3468899999998654 553 1258999999999886 45543 2589999999999875
Q ss_pred CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCC
Q 037733 1302 LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQN 1381 (1450)
Q Consensus 1302 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 1381 (1450)
+|.. .++|+.|++++|. +..+|. .+++|+.|++++|.+. .+|.. ..+
T Consensus 377 LP~l---~~~L~~LdLs~N~--------------Lt~LP~------------l~s~L~~LdLS~N~Ls-sIP~l---~~~ 423 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNR--------------LTSLPV------------LPSELKELMVSGNRLT-SLPML---PSG 423 (788)
T ss_pred Cccc---ccccceEEecCCc--------------ccCCCC------------cccCCCEEEccCCcCC-CCCcc---hhh
Confidence 6643 3679999999993 333443 2368999999999854 56753 357
Q ss_pred CCeeeccCCCCCCCCCCC-CCccccccccccCChhhHH
Q 037733 1382 LTELIIEDCPKLKYFPEK-GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1382 L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 1418 (1450)
|+.|++++|. ++.+|.. ..+++|+.|++++|++++.
T Consensus 424 L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 424 LLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCch
Confidence 8999999996 5577764 6788999999999999765
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=5.7e-17 Score=172.46 Aligned_cols=255 Identities=15% Similarity=0.125 Sum_probs=158.9
Q ss_pred ccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCcc
Q 037733 1036 LSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLE 1114 (1450)
Q Consensus 1036 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~ 1114 (1450)
+|+.-..|.|..|.+....+..|..+++|+.|||++|.+...-+ .|.++.+|-+|-+.+++.++.+|...+ .++.+|+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHH
Confidence 45677788888888877777778888888888888888776655 677777777777777555666665544 4666677
Q ss_pred EEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCch------------hh
Q 037733 1115 ILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKL------------ES 1181 (1450)
Q Consensus 1115 ~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~------------~~ 1181 (1450)
.|.+.-|.+.-... .+..+++|..|.+.++ ..+.+.- ..+..+ .+++.+.+..|... ..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~-~tf~~l------~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICK-GTFQGL------AAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhcc-ccccch------hccchHhhhcCccccccccchhhhHHhh
Confidence 76666665543221 2233445555544442 1111110 011111 23444444444311 01
Q ss_pred hhhhcCCCC----------------------CccEE---EeecccCccccC-ccccCCCCCcEEEEccCCCccchhcccC
Q 037733 1182 VAERLDNNT----------------------SLERI---RIYFCENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLD 1235 (1450)
Q Consensus 1182 ~~~~~~~l~----------------------~L~~L---~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 1235 (1450)
.+..++... .++.+ -.+.|......| ..|..+++|++|++++|.++..-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 111111111 11111 122232333333 3577888888888888888888888888
Q ss_pred CCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCc
Q 037733 1236 NNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRL 1299 (1450)
Q Consensus 1236 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1299 (1450)
....+++|.|..|++-..-...|.++.+|++|+|.+|.++...|..|.++.+|.+|.+-.|++.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8888888888888866555567788888888888888888888888888888888888777654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=3.1e-14 Score=176.69 Aligned_cols=247 Identities=20% Similarity=0.275 Sum_probs=149.4
Q ss_pred CCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCC
Q 037733 1085 SKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNL 1164 (1450)
Q Consensus 1085 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~ 1164 (1450)
.+...|+++++.+ +.+|..+ .++|+.|++++|.+...... .+++|+.|++++| +++. +|. .+
T Consensus 178 ~~~~~L~L~~~~L-tsLP~~I----p~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N-~Lts--LP~--------~l 239 (754)
T PRK15370 178 NNKTELRLKILGL-TTIPACI----PEQITTLILDNNELKSLPEN--LQGNIKTLYANSN-QLTS--IPA--------TL 239 (754)
T ss_pred cCceEEEeCCCCc-CcCCccc----ccCCcEEEecCCCCCcCChh--hccCCCEEECCCC-cccc--CCh--------hh
Confidence 3567899988874 4566543 35799999999988754332 2357888888875 3442 221 23
Q ss_pred CCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1165 PPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
|++|+.|++++|.+. .+|..+ .++|+.|++++|++. .+|..+. ++|+.|++++|.+.. +|..+. ++|+.|+
T Consensus 240 ~~~L~~L~Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~ 310 (754)
T PRK15370 240 PDTIQEMELSINRIT-ELPERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLN 310 (754)
T ss_pred hccccEEECcCCccC-cCChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHH
Confidence 457888888888766 344433 246788888877766 3555442 477788888777664 343322 3677777
Q ss_pred cccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1245 TSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
+++|.+.. +|..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|++.. +|..+ .++|+.|+|++|.
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~--- 378 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNA--- 378 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCc---
Confidence 77776543 44333 2567777777776653 554442 477777777777653 44433 2567777777762
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccc----cCCCCCCCCeeeccCCCCC
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSS----SIVDLQNLTELIIEDCPKL 1393 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~ 1393 (1450)
+..+|.. .+.+|+.|++++|.+. .+|. .+..++++..|+|.+|++.
T Consensus 379 -----------Lt~LP~~-----------l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 379 -----------LTNLPEN-----------LPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -----------CCCCCHh-----------HHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2234432 1235666777776643 3343 2333466666666666543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4e-14 Score=175.63 Aligned_cols=251 Identities=20% Similarity=0.279 Sum_probs=181.5
Q ss_pred CcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEE
Q 037733 1062 SSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDI 1141 (1450)
Q Consensus 1062 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 1141 (1450)
.+...|+++++.+.. +|. ..+++|+.|++++|.+. .+|..+ .++|+.|++++|.+..... ..+++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~-~Ip~~L~~L~Ls~N~Lt-sLP~~l----~~nL~~L~Ls~N~LtsLP~--~l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPA-CIPEQITTLILDNNELK-SLPENL----QGNIKTLYANSNQLTSIPA--TLPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCc-ccccCCcEEEecCCCCC-cCChhh----ccCCCEEECCCCccccCCh--hhhccccEEEC
Confidence 456789999887664 442 13578999999999854 566654 3689999999998875432 24568999999
Q ss_pred eCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEE
Q 037733 1142 YGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRI 1221 (1450)
Q Consensus 1142 ~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 1221 (1450)
++|. +.. +|. .+|.+|+.|++++|.+.. +|..+ +++|+.|++++|++.. +|..+ .++|+.|++
T Consensus 249 s~N~-L~~--LP~--------~l~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~L 311 (754)
T PRK15370 249 SINR-ITE--LPE--------RLPSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLNV 311 (754)
T ss_pred cCCc-cCc--CCh--------hHhCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHHh
Confidence 9863 442 232 234689999999988774 55544 3689999999998874 55444 257999999
Q ss_pred ccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1222 SLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1222 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
++|.+.. +|..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|.+. .+|..+. ++|+.|+|++|.+..
T Consensus 312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 312 QSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN- 381 (754)
T ss_pred cCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-
Confidence 9999875 45433 3689999999998654 665553 79999999999876 5666553 589999999999885
Q ss_pred CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCC
Q 037733 1302 LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNL 1369 (1450)
Q Consensus 1302 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 1369 (1450)
+|..+. .+|+.|++++|. +..+|..+.. .....+++..|++.+|++.
T Consensus 382 LP~~l~--~sL~~LdLs~N~--------------L~~LP~sl~~-----~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNN--------------LVRLPESLPH-----FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCC--------------cccCchhHHH-----HhhcCCCccEEEeeCCCcc
Confidence 565443 479999999993 3344443221 1233468899999999865
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=6.4e-16 Score=164.54 Aligned_cols=244 Identities=17% Similarity=0.103 Sum_probs=173.8
Q ss_pred cCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEcc-CCCccchhcccCCCCCC
Q 037733 1162 GNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISL-CSKLESIAERLDNNTSL 1240 (1450)
Q Consensus 1162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L 1240 (1450)
.++|+....++|..|.+....+.+|..+++|+.|||++|.+..+-|..|.++++|..|.+.+ |+++......|.++.+|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45667888888888888888888888888888888888888887788888888888887777 66665444567777778
Q ss_pred CceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCc---------------------
Q 037733 1241 EKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRL--------------------- 1299 (1450)
Q Consensus 1241 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--------------------- 1299 (1450)
+.|.+.-|.+.....+.|..+++|..|.+.+|.+...-...+.++.+++.+.+..|++.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 88777777766666667777777777777777654322224555566666665555411
Q ss_pred ----------------------------------------ccCc-ccccCCCCCceEEEeCCCCccccccccCCCCCccc
Q 037733 1300 ----------------------------------------QALP-KGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVS 1338 (1450)
Q Consensus 1300 ----------------------------------------~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 1338 (1450)
...| ..|..+++|++|++++|. +..
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-------i~~------- 288 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-------ITR------- 288 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-------cch-------
Confidence 1111 136678889999998882 222
Q ss_pred CCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCccccccccccCChhhH
Q 037733 1339 FPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1339 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~ 1417 (1450)
+.+ .+|.....+++|.|..|++-..-...|.++..|++|+|.+|++...-|.. ....+|..|++-.||+.+
T Consensus 289 i~~--------~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 289 IED--------GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhh--------hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 111 34556678888999988866555667899999999999999766665554 667889999999999876
Q ss_pred HhhhcCCCCCC
Q 037733 1418 EKCRKDGGRYR 1428 (1450)
Q Consensus 1418 ~~c~~~~~~~~ 1428 (1450)
. |+-.+..+|
T Consensus 361 n-C~l~wl~~W 370 (498)
T KOG4237|consen 361 N-CRLAWLGEW 370 (498)
T ss_pred c-cchHHHHHH
Confidence 5 666555544
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=1.1e-14 Score=169.75 Aligned_cols=213 Identities=19% Similarity=0.147 Sum_probs=99.0
Q ss_pred cCCCCCccEEEeecccCccccCccccCC---CCCcEEEEccCCCcc----chhcccCCC-CCCCceecccCCCcc----c
Q 037733 1186 LDNNTSLERIRIYFCENLKNLPSGLHNL---RQLREIRISLCSKLE----SIAERLDNN-TSLEKIDTSDCENLK----I 1253 (1450)
Q Consensus 1186 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~----~~~~~~~~~-~~L~~L~L~~n~~~~----~ 1253 (1450)
+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|.+.. .+...+..+ ++|++|++++|.+.+ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3344455555555555443332222222 225555555555441 112223333 555566666555442 1
Q ss_pred ccccccCCCccceEeeccCCCcc----ccCCCCCCCCCcceEeeccCCCccc----CcccccCCCCCceEEEeCCCCccc
Q 037733 1254 LPSGLHNLHQLREIILFRCGNLV----SFPEGGLPCAKLTRLEISYCKRLQA----LPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1254 ~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
++..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|+....
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 22334445556666666655542 1112222334666666666655432 223345556666666666631100
Q ss_pred cccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCC----ccccccCCCCCCCCeeeccCCCCCCC----CC
Q 037733 1326 DLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNL----ERLSSSIVDLQNLTELIIEDCPKLKY----FP 1397 (1450)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~~ 1397 (1450)
. +..+... .....+.|++|++++|.+. ..+...+..+++|+++++++|.+... +.
T Consensus 237 ~---------~~~l~~~--------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 237 G---------AAALASA--------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred H---------HHHHHHH--------HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 0 0000000 0001246666677666543 12334455557777777777755432 11
Q ss_pred C-CCCc-cccccccccCChh
Q 037733 1398 E-KGLP-SSLLRLRLERCPL 1415 (1450)
Q Consensus 1398 ~-~~~~-~~L~~L~l~~n~l 1415 (1450)
. .... +.|+.|++.+||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 1 1222 5677777777664
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.5e-11 Score=162.99 Aligned_cols=293 Identities=18% Similarity=0.209 Sum_probs=183.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeC-CccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVS-DDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i 266 (1450)
..+|-|+.-.+. |... ...+++.|+|++|.||||++..+.+. ++.++|+++. .+.+...+...+
T Consensus 14 ~~~~~R~rl~~~----l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAK----LSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHH----Hhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 446667654444 4222 24689999999999999999998852 2368999986 444666777777
Q ss_pred HHHhhcCCCC------------CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHHhhhccc-cCCCCCcEEEEe
Q 037733 267 LTSIVAGQNV------------DNHDLNKLQVELNKQLS--GKKFLLVLDDVWNENYNYWVEFSRPF-EAGAQGSKIIVT 331 (1450)
Q Consensus 267 ~~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~~~~~l-~~~~~gs~ilvT 331 (1450)
+..+...... ...+...+...+...+. +.+++|||||+...+..........+ .....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777422110 11222333333333332 67899999999775433333333333 333556788899
Q ss_pred cCchHH---HHhcCCCCceeCC----CCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHH
Q 037733 332 TRNHEV---AEIMGTVPPHPLK----ELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRR 404 (1450)
Q Consensus 332 tr~~~v---~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~ 404 (1450)
||...- ..........++. +|+.+|+.++|....... ...+.+.+|.+.|+|.|+++..++..+.......
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 998421 1111112344555 999999999998754332 2356778999999999999999988775542210
Q ss_pred HHHHHHhcccccCCc-cccChhhHH-HHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHH
Q 037733 405 VWEGVLSSKIWELPE-ERCGIIPAL-AVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDL 482 (1450)
Q Consensus 405 ~w~~~l~~~~~~~~~-~~~~i~~~l-~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 482 (1450)
. ... +.+.+ ....+...+ .-.++.||++.+..+...|+++ .++.+-+-... | .+.
T Consensus 237 ~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~-----------~~~ 293 (903)
T PRK04841 237 H--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G-----------EEN 293 (903)
T ss_pred h--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C-----------CCc
Confidence 0 000 11111 112344444 3348899999999999999997 33433222111 1 112
Q ss_pred HHHHHHHHHhcCCCcc-cCCCCCcEEEcHHHHHHHHHhh
Q 037733 483 GRDFFKELYSRSFFQQ-SSNNTSRFVMHDLINDLAKWAA 520 (1450)
Q Consensus 483 ~~~~~~~L~~~~l~~~-~~~~~~~~~mHdlv~~~~~~~~ 520 (1450)
+...+++|.+++++.. .+++..+|++|++++++.+...
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 4678999999999753 3444457999999999998764
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=2e-14 Score=167.75 Aligned_cols=239 Identities=19% Similarity=0.158 Sum_probs=166.1
Q ss_pred CCccEEEecCCCchh----hhhhhcCCCCCccEEEeecccCcc------ccCccccCCCCCcEEEEccCCCccchhcccC
Q 037733 1166 PSLKFLEVNSCSKLE----SVAERLDNNTSLERIRIYFCENLK------NLPSGLHNLRQLREIRISLCSKLESIAERLD 1235 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 1235 (1450)
.+|+.|++++|.+.. .++..+...++|++|+++++.+.+ .++..+..+++|++|++++|.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 468888888888743 355566778889999999887762 2345667789999999999998755554444
Q ss_pred CC---CCCCceecccCCCcc----cccccccCC-CccceEeeccCCCcc----ccCCCCCCCCCcceEeeccCCCccc--
Q 037733 1236 NN---TSLEKIDTSDCENLK----ILPSGLHNL-HQLREIILFRCGNLV----SFPEGGLPCAKLTRLEISYCKRLQA-- 1301 (1450)
Q Consensus 1236 ~~---~~L~~L~L~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~-- 1301 (1450)
.+ ++|++|++++|++.+ .+...+..+ ++|+.|++++|.+.+ .++..+..+.+|++|++++|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 44 459999999998763 233455666 899999999999873 2333445567999999999998743
Q ss_pred --CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccc----c
Q 037733 1302 --LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSS----S 1375 (1450)
Q Consensus 1302 --~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~ 1375 (1450)
++..+..+++|+.|++++|...... ... +...+...++|++|++++|.+...... .
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~---------~~~---------l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEG---------ASA---------LAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHH---------HHH---------HHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 3345666789999999999421000 011 112234567999999999986542111 1
Q ss_pred C-CCCCCCCeeeccCCCCCC----CCCC-CCCccccccccccCChhhHHhhhc
Q 037733 1376 I-VDLQNLTELIIEDCPKLK----YFPE-KGLPSSLLRLRLERCPLIGEKCRK 1422 (1450)
Q Consensus 1376 ~-~~l~~L~~L~l~~n~~~~----~~~~-~~~~~~L~~L~l~~n~l~~~~c~~ 1422 (1450)
+ ...+.|++|++++|.+.. .+.. ....++|+.+++++|+++.+.|..
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 1 235899999999996541 1111 133478999999999998775443
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.7e-14 Score=135.32 Aligned_cols=160 Identities=22% Similarity=0.309 Sum_probs=121.4
Q ss_pred ccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcc
Q 037733 1210 LHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLT 1289 (1450)
Q Consensus 1210 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 1289 (1450)
+.++...+.|.+++|.++. +|..+..+.+|+.|++++|. +..+|..+..++.|+.|+++-|.+. .+|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 4456667777788887764 45567777888888888877 4556778888888888888877654 6788888888888
Q ss_pred eEeeccCCCccc-CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCC
Q 037733 1290 RLEISYCKRLQA-LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPN 1368 (1450)
Q Consensus 1290 ~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 1368 (1450)
.||+++|++... +|..|..++.|+.|+++.|. +..+|+++++ +++|+.|.+..|.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd--------------fe~lp~dvg~---------lt~lqil~lrdndl 162 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND--------------FEILPPDVGK---------LTNLQILSLRDNDL 162 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC--------------cccCChhhhh---------hcceeEEeeccCch
Confidence 888888887754 67778888888888888873 5567776643 46888888888874
Q ss_pred CccccccCCCCCCCCeeeccCCCCCCCCC
Q 037733 1369 LERLSSSIVDLQNLTELIIEDCPKLKYFP 1397 (1450)
Q Consensus 1369 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1397 (1450)
+ ++|..++.+..|+.|.+.+|++ +.+|
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl-~vlp 189 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRL-TVLP 189 (264)
T ss_pred h-hCcHHHHHHHHHHHHhccccee-eecC
Confidence 4 5788888999999999999954 4443
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=2.2e-14 Score=134.58 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=134.0
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
..++.|.+++|+++. +|+.++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+|.|+.|||
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 467788888887764 4556788999999999999887 67888999999999999998876 57899999999999999
Q ss_pred ccCCCcc-cccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1246 SDCENLK-ILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1246 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
++|++.. .+|..|..+..|+-|++++|.+ ..+|...+++++|+.|.+..|.+.. +|..++.++.|+.|.+.||.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccce
Confidence 9998765 7899999999999999999987 5788899999999999999999887 88899999999999999994
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=1.7e-12 Score=163.82 Aligned_cols=235 Identities=24% Similarity=0.275 Sum_probs=157.3
Q ss_pred ccccccEEEecCCC--CCcCCc-CccCCCccceeeccCC-CcccccccccccCCccEEecCCCCchhHhhhhhhhhcccC
Q 037733 594 KLQRLRVFSLCGYH--ISKLPD-SIGDLRYLRYLNLSGT-GIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLH 669 (1450)
Q Consensus 594 ~~~~Lr~L~L~~~~--i~~lp~-~i~~L~~Lr~L~L~~~-~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 669 (1450)
..+.|++|-+.++. +..++. .|..+++||+|||++| .+.+||++|+.|.+||+|++++ +.+..+|.++.+|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 45579999999986 677754 4788999999999976 5789999999999999999999 78999999999999999
Q ss_pred cccccCCCCCccCCCCCCCcccccccCceecc-CCCCCCchhccccccCCCceeeccCcCCCChhhhhhhccccccCcce
Q 037733 670 HLKNSNTHSLEEMPLGIGKLTCLQTLCNFVVG-KDSGSGLRELKSLMHLKGTLNISNLENVKHIVDAEEAQLDRKENLEE 748 (1450)
Q Consensus 670 ~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~i~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 748 (1450)
+|++..+..+..+|..+..|.+||+|..+... ..+...+.++.+|.+|+ .+.+..... .....+..+..|.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRS 694 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHH
Confidence 99999988777776666779999999777665 44456677777777776 454432111 00011222222222
Q ss_pred EEEEeccCCCCCCCchhhhHHhHhccCCCCCCcceEEEeccCCCCCCC-CCCC---CC-CCceeEEEEecCCCCCCCCCC
Q 037733 749 LWLRWTRSTNGSASREAEAEEGVFDMLKPHKNLKHFCISGYGGTKFPT-WLGD---SS-FSNLVALKFEDCGMCTTLPSV 823 (1450)
Q Consensus 749 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~~-l~~L~~L~L~~~~~~~~l~~l 823 (1450)
+...-... ..........+..+.+|+.|.|.++.+..... |... .. |+++..+...+|.....+.+.
T Consensus 695 ~~~~l~~~--------~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 695 LLQSLSIE--------GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HhHhhhhc--------ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 21110000 00011233445667788888888777654322 2211 11 445666666667666666666
Q ss_pred CCcccccceeccccccceEeC
Q 037733 824 GQLPSLKHLALRRMSRVKRLG 844 (1450)
Q Consensus 824 ~~l~~L~~L~L~~~~~l~~~~ 844 (1450)
...|+|+.|.+..|..++.+.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hccCcccEEEEecccccccCC
Confidence 677788888887776666543
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=1.3e-09 Score=130.46 Aligned_cols=295 Identities=14% Similarity=0.090 Sum_probs=173.4
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
+..++||++|++++...+...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++.++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 4569999999999999985532 12334567899999999999999999854322212346677777767788899999
Q ss_pred HHHhhcC-CCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHHhhhccccCCCCCcE--EEEecCchHH
Q 037733 267 LTSIVAG-QNVDNHDLNKLQVELNKQLS--GKKFLLVLDDVWNEN----YNYWVEFSRPFEAGAQGSK--IIVTTRNHEV 337 (1450)
Q Consensus 267 ~~~l~~~-~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~~~~~l~~~~~gs~--ilvTtr~~~v 337 (1450)
+.++... ......+.++....+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ +|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 9998752 22123355666677777664 456899999997632 1223333332222 12333 5666655433
Q ss_pred HHhcC-------CCCceeCCCCCHHHHHHHHHhcc---CCCCchhHHHHHHHHHHh----CCChHHHHHHHhhh--c---
Q 037733 338 AEIMG-------TVPPHPLKELSDNDCLAIFAQHS---LGPRELLDEIGKKLVSKC----GGLPLAAQTLGGLL--R--- 398 (1450)
Q Consensus 338 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~i~~~~----~G~PLai~~~~~~L--~--- 398 (1450)
..... ....+.+.+++.++..+++..++ +.+....++.++.|++.+ |..+.|+.++-... +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 12457899999999999987765 222222344455555555 44677776664322 1
Q ss_pred CCC--CHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhccC-CC-CcccchhHHHHH--hhhCCCccC
Q 037733 399 GKH--DRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLL-PK-DYEFEEEEIILL--WCASGFLDH 472 (1450)
Q Consensus 399 ~~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~~--w~a~g~i~~ 472 (1450)
+.. +.++.+.+.+.. -.....-.+..||.+.|..+..++.. .. ...+...++... .+++.+-.
T Consensus 266 ~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~- 334 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY- 334 (394)
T ss_pred CCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC-
Confidence 111 234444444322 11234556889999888777655432 21 123455554432 22221100
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCCcc
Q 037733 473 KESENPSEDLGRDFFKELYSRSFFQQ 498 (1450)
Q Consensus 473 ~~~~~~~~~~~~~~~~~L~~~~l~~~ 498 (1450)
.........+|+++|...|++..
T Consensus 335 ---~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 335 ---EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred ---CcCcHHHHHHHHHHHHhcCCeEE
Confidence 01112335668999999999875
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=2.1e-08 Score=118.81 Aligned_cols=296 Identities=13% Similarity=0.072 Sum_probs=168.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-ccC---CcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ-DHF---DLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 263 (1450)
..++||++++++|..++...- .+.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 369999999999999986521 12234578999999999999999999843111 111 135777877777778899
Q ss_pred HHHHHHhhc---CCCCCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCC---hhhHHhhhccc-cCCC--CCcEEEEec
Q 037733 264 KAILTSIVA---GQNVDNHDLNKLQVELNKQL--SGKKFLLVLDDVWNEN---YNYWVEFSRPF-EAGA--QGSKIIVTT 332 (1450)
Q Consensus 264 ~~i~~~l~~---~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~~~~~l-~~~~--~gs~ilvTt 332 (1450)
.+|+.++.. .......+..+....+.+.+ .+++++||||+++.-. ......+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 999998842 11112224445555555555 3567899999997641 11122222221 1111 233445555
Q ss_pred CchHHHHhcC-------CCCceeCCCCCHHHHHHHHHhccC---CCCc---hhHHHHHHHHHHhCCChHHH-HHHHhhh-
Q 037733 333 RNHEVAEIMG-------TVPPHPLKELSDNDCLAIFAQHSL---GPRE---LLDEIGKKLVSKCGGLPLAA-QTLGGLL- 397 (1450)
Q Consensus 333 r~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~---~~~~---~~~~~~~~i~~~~~G~PLai-~~~~~~L- 397 (1450)
........+. ....+.+.+.+.++..+++..++. .+.. ...+.+.+++....|.|-.+ .++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433221111 124578999999999999987753 2111 22234555667777888443 3322111
Q ss_pred -c---CC--CCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhccCC--CCcccchhHHHHHhh--hC
Q 037733 398 -R---GK--HDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLP--KDYEFEEEEIILLWC--AS 467 (1450)
Q Consensus 398 -~---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~w~--a~ 467 (1450)
. +. -+.++.+.+.+.. -.....-++..||.+.|..+..++..- ++..+...++...+. ++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11 1233333333221 112344567899998887666554211 334466666665321 11
Q ss_pred CCccCCCCCCchHHHHHHHHHHHHhcCCCccc
Q 037733 468 GFLDHKESENPSEDLGRDFFKELYSRSFFQQS 499 (1450)
Q Consensus 468 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 499 (1450)
. +. .....+....+++.+|...|++...
T Consensus 323 ~-~~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 D-IG---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred h-cC---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 11 1122346677889999999999864
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.1e-11 Score=132.64 Aligned_cols=225 Identities=12% Similarity=0.007 Sum_probs=114.1
Q ss_pred CccEEEecCCCchhhhh-hhcCCCCCccEEEeecccCcccc--CccccCCCCCcEEEEccCCCccchhcc-cCCCCCCCc
Q 037733 1167 SLKFLEVNSCSKLESVA-ERLDNNTSLERIRIYFCENLKNL--PSGLHNLRQLREIRISLCSKLESIAER-LDNNTSLEK 1242 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~ 1242 (1450)
.|++..|.++....... .....|++++.|||++|-+.... ......+|+|+.|+|+.|.+....... -..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 45566665554432111 23345566666666665544321 123345566666666666554221110 113445555
Q ss_pred eecccCCCcc-cccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccC-cccccCCCCCceEEEeCC
Q 037733 1243 IDTSDCENLK-ILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQAL-PKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1243 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n 1320 (1450)
|.|++|.+.. .+...+..+|+|+.|++..|...........-+..|+.|||++|++.... -...+.++.|+.|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 5555555442 22223344555555555555322221111222345555555555554421 022344455555555444
Q ss_pred CCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCcc-cccc-----CCCCCCCCeeeccCCCC--
Q 037733 1321 SPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLER-LSSS-----IVDLQNLTELIIEDCPK-- 1392 (1450)
Q Consensus 1321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~-----~~~l~~L~~L~l~~n~~-- 1392 (1450)
.+... .|+. ...+++|++|++..|+.
T Consensus 282 ----------------------------------------------gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 282 ----------------------------------------------GIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ----------------------------------------------CcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 32221 1111 35567888888888864
Q ss_pred CCCCCCCCCccccccccccCChhhHHhhhcCCCCCCCcccCcceeeccc
Q 037733 1393 LKYFPEKGLPSSLLRLRLERCPLIGEKCRKDGGRYRDLLTHIPYVWGFE 1441 (1450)
Q Consensus 1393 ~~~~~~~~~~~~L~~L~l~~n~l~~~~c~~~~~~~~~~~~~~~~~~~~~ 1441 (1450)
-.++......++|+.|.+..|+++.+ .+......||.++.+..|+
T Consensus 316 w~sl~~l~~l~nlk~l~~~~n~ln~e----~~~a~~~VIAr~~~l~~LN 360 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRITLNYLNKE----TDTAKLLVIARISQLVKLN 360 (505)
T ss_pred ccccchhhccchhhhhhccccccccc----ccceeEEeeeehhhhhhhc
Confidence 23333345667888888888888765 2255677778787775543
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.04 E-value=1.2e-08 Score=121.62 Aligned_cols=290 Identities=19% Similarity=0.228 Sum_probs=189.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc-cCHHHHHHHHHHHhhcCCCC
Q 037733 198 KQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD-FDVIRLTKAILTSIVAGQNV 276 (1450)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 276 (1450)
.++++.|... .+.+.+.|..|+|.||||++.+.+. +.. .=..+.|.+.++. -++.++...++..+....+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 3556666433 3579999999999999999999975 222 2246899998755 46788888888888743321
Q ss_pred ------------CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHHh-hhccccCCCCCcEEEEecCchHH---H
Q 037733 277 ------------DNHDLNKLQVELNKQLS--GKKFLLVLDDVWNENYNYWVE-FSRPFEAGAQGSKIIVTTRNHEV---A 338 (1450)
Q Consensus 277 ------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-~~~~l~~~~~gs~ilvTtr~~~v---~ 338 (1450)
...+...+...+...+. .++..+||||..-........ +...+.....+-.+|||||...- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 22334445555555443 468999999986644333333 33333445568889999998632 2
Q ss_pred HhcCCCCceeCC----CCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhccc
Q 037733 339 EIMGTVPPHPLK----ELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSKI 414 (1450)
Q Consensus 339 ~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~ 414 (1450)
+.--.....++. .++.+|+-++|......+ -....++.+.+..+|-+-|+..++-.++...+.+.--..+
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L---- 250 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP--LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL---- 250 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC--CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc----
Confidence 111111223333 689999999998765322 2356788899999999999999998888443333222111
Q ss_pred ccCCccccChhh-HHHHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHHHHHHhc
Q 037733 415 WELPEERCGIIP-ALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFFKELYSR 493 (1450)
Q Consensus 415 ~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~ 493 (1450)
.+....+.. ...--++.||+++|..++-||+++.- -+.|+..- +-++.+..++++|.++
T Consensus 251 ---sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe~L~~~ 310 (894)
T COG2909 251 ---SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLEELERR 310 (894)
T ss_pred ---cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHHHHHhC
Confidence 111111111 23445789999999999999998652 22333322 1234477889999999
Q ss_pred CCCc-ccCCCCCcEEEcHHHHHHHHHhhc
Q 037733 494 SFFQ-QSSNNTSRFVMHDLINDLAKWAAG 521 (1450)
Q Consensus 494 ~l~~-~~~~~~~~~~mHdlv~~~~~~~~~ 521 (1450)
+|+- +-++....|+.|.++.||.+....
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 9975 455667899999999999886543
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=1.3e-09 Score=120.65 Aligned_cols=193 Identities=20% Similarity=0.254 Sum_probs=99.6
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH-----
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK----- 264 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~----- 264 (1450)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.. +..-..++|+..........+..
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 799999999999999664 23688999999999999999999843 22111344444433332211111
Q ss_pred ----HHHHHhhcCCC---C----------CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC------hhhHHhhhccccC
Q 037733 265 ----AILTSIVAGQN---V----------DNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN------YNYWVEFSRPFEA 321 (1450)
Q Consensus 265 ----~i~~~l~~~~~---~----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~~~~~~~l~~ 321 (1450)
.+...+..... . .......+...+.+ .+++++||+||+.... ......+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 11111211100 0 01122222232222 2445999999995542 1111122222222
Q ss_pred --CCCCcEEEEecCchHHHHh--------cCCCCceeCCCCCHHHHHHHHHhccCCCC--chhHHHHHHHHHHhCCChHH
Q 037733 322 --GAQGSKIIVTTRNHEVAEI--------MGTVPPHPLKELSDNDCLAIFAQHSLGPR--ELLDEIGKKLVSKCGGLPLA 389 (1450)
Q Consensus 322 --~~~gs~ilvTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~i~~~~~G~PLa 389 (1450)
......+|++.....+... .+....+.+++++.+++++++...+.... ...++..++|+..+||+|..
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHH
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHH
Confidence 1233344444444444332 22334589999999999999988542221 12466779999999999998
Q ss_pred HHH
Q 037733 390 AQT 392 (1450)
Q Consensus 390 i~~ 392 (1450)
|..
T Consensus 231 l~~ 233 (234)
T PF01637_consen 231 LQE 233 (234)
T ss_dssp HHH
T ss_pred Hhc
Confidence 864
No 32
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=2.9e-08 Score=112.06 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=113.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH----H
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELN----K 290 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~----~ 290 (1450)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..++..++.... ..+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999853311 11 12333 23345677888888888765432 222222333332 2
Q ss_pred H-hCCCcEEEEEeCCCCCChhhHHhhhcccc---CCCCCcEEEEecCchHHHHhcC----------CCCceeCCCCCHHH
Q 037733 291 Q-LSGKKFLLVLDDVWNENYNYWVEFSRPFE---AGAQGSKIIVTTRNHEVAEIMG----------TVPPHPLKELSDND 356 (1450)
Q Consensus 291 ~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~ilvTtr~~~v~~~~~----------~~~~~~l~~L~~~~ 356 (1450)
. ..+++.+||+||+|......++.+..... .......|++|.... ....+. ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 36788999999999876666666543221 112233455655432 221111 12457899999999
Q ss_pred HHHHHHhccCC-----CCchhHHHHHHHHHHhCCChHHHHHHHhhh
Q 037733 357 CLAIFAQHSLG-----PRELLDEIGKKLVSKCGGLPLAAQTLGGLL 397 (1450)
Q Consensus 357 ~~~lf~~~~~~-----~~~~~~~~~~~i~~~~~G~PLai~~~~~~L 397 (1450)
..+++...+.. ...-.++..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99988765421 112346889999999999999999988775
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=1.2e-08 Score=117.39 Aligned_cols=276 Identities=16% Similarity=0.085 Sum_probs=150.3
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+|||++..++++..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchh-HHHHH
Confidence 3699999999999998864321 22335568899999999999999999843 2222 1122111111111 12222
Q ss_pred HHhhcCCCCCCCC----HHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhcC-
Q 037733 268 TSIVAGQNVDNHD----LNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMG- 342 (1450)
Q Consensus 268 ~~l~~~~~~~~~~----~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~- 342 (1450)
..+....-.-.++ .......+...+.+.+..+|+|+.... ..|. ..+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---ecC---CCeEEEEecCCccccCHHHHh
Confidence 2222111000000 011233445555555666666665433 1111 111 22455666777654432211
Q ss_pred -CCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhcccccCCc-
Q 037733 343 -TVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSKIWELPE- 419 (1450)
Q Consensus 343 -~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~- 419 (1450)
....+++++++.++..+++.+.+.... ...++.+..|++.|+|.|-.+..++..+ |.............
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRD 220 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHH
Confidence 124578999999999999987764322 2346778899999999997665555432 11110000000000
Q ss_pred cccChhhHHHHhhcCCChhHHHHHh-HhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHHH-HHHhcCCCc
Q 037733 420 ERCGIIPALAVSYYYLPPTLRQCFA-YCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFFK-ELYSRSFFQ 497 (1450)
Q Consensus 420 ~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~ 497 (1450)
.-......+...|..++++.+..+. .++.++.+ .+..+.+.... | .....++..++ .|++++|+.
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCcc
Confidence 0011222356678889988877666 55777544 45555544433 1 12234666677 699999997
Q ss_pred cc
Q 037733 498 QS 499 (1450)
Q Consensus 498 ~~ 499 (1450)
..
T Consensus 288 ~~ 289 (305)
T TIGR00635 288 RT 289 (305)
T ss_pred cC
Confidence 53
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=3.5e-09 Score=122.12 Aligned_cols=277 Identities=17% Similarity=0.124 Sum_probs=149.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+|+|+++.++.+..++..... .......+.|+|++|+||||+|+.+++.. ...+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 5699999999999888854211 12335678899999999999999999843 2221 112211 111111222223
Q ss_pred HHhhcCCCCCCCCH----HHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhcC-
Q 037733 268 TSIVAGQNVDNHDL----NKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMG- 342 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~- 342 (1450)
..+....-.-.++. ....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 32221110000000 112223334444445555555543321 000011 12445666777543332211
Q ss_pred -CCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhcccccCCc-
Q 037733 343 -TVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSKIWELPE- 419 (1450)
Q Consensus 343 -~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~- 419 (1450)
....++++++++++..+++.+.+.... ...++.+..|++.|+|.|-.+..+...+. .|...... .....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~I~~~ 241 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GVITKE 241 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CCCCHH
Confidence 124589999999999999987764322 24467889999999999965544443321 12211100 00100
Q ss_pred cccChhhHHHHhhcCCChhHHHHHh-HhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHHH-HHHhcCCCc
Q 037733 420 ERCGIIPALAVSYYYLPPTLRQCFA-YCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFFK-ELYSRSFFQ 497 (1450)
Q Consensus 420 ~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~ 497 (1450)
.-......+...|..|++..+..+. ....|+.+ .+..+.+.... | . ..+.+++.++ .|++++|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~----~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----E----ERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----C----CcchHHHHhhHHHHHcCCcc
Confidence 0112334456677888888888775 67778766 46666664443 1 1 1233444555 799999997
Q ss_pred ccC
Q 037733 498 QSS 500 (1450)
Q Consensus 498 ~~~ 500 (1450)
...
T Consensus 309 ~~~ 311 (328)
T PRK00080 309 RTP 311 (328)
T ss_pred cCC
Confidence 543
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=7.6e-11 Score=127.77 Aligned_cols=235 Identities=20% Similarity=0.341 Sum_probs=124.7
Q ss_pred ccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccc--cCcccCCCCcccEEEeecCCCccccC
Q 037733 1002 QDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVK--LPQSSLSLSSLRKIEIRNCSSLVSFP 1079 (1450)
Q Consensus 1002 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~ 1079 (1450)
..+++|+.+.+..|++++.... ..+..-+++|++|+++.|.-... +-....++..++.+.+++|.-.+.-.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~L-------k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~ 259 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSL-------KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA 259 (483)
T ss_pred HhcchhhhhhhcccchhHHHHH-------HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH
Confidence 5667777777878877775433 33445567788888887764322 11233456667777777765443221
Q ss_pred ---CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc---CCCCCCCccEEEEeCCCCccccccc
Q 037733 1080 ---EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA---GVQLPPSLKRLDIYGCSNIRTLTLP 1153 (1450)
Q Consensus 1080 ---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~ 1153 (1450)
.-..+..+..+++..|..++......+...+..|+.|+.++|...+... -....++|+.|.++.|..++...+.
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 2234555666777777666654433333456777777777776544322 2245567777777777665544433
Q ss_pred cccccccccCCCCCccEEEecCCCchhh--hhhhcCCCCCccEEEeecccCcccc-----CccccCCCCCcEEEEccCCC
Q 037733 1154 AKLESLEVGNLPPSLKFLEVNSCSKLES--VAERLDNNTSLERIRIYFCENLKNL-----PSGLHNLRQLREIRISLCSK 1226 (1450)
Q Consensus 1154 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~~ 1226 (1450)
..-.+. +.|+.+++..|..... +...-.+++.|+.|.+++|...+.. ...-..+..|+.|.+++|+.
T Consensus 340 ~l~rn~------~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 340 MLGRNC------PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhcCC------hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 222222 4566666666654432 2223345566666666665554332 11122334455555555544
Q ss_pred cc-chhcccCCCCCCCceecccCC
Q 037733 1227 LE-SIAERLDNNTSLEKIDTSDCE 1249 (1450)
Q Consensus 1227 ~~-~~~~~~~~~~~L~~L~L~~n~ 1249 (1450)
+. ..-+.+..+++|+.+++-+|.
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chHHHHHHHhhCcccceeeeechh
Confidence 31 122233344444444444443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.2e-10 Score=124.90 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCcccEEEeecCCCccccC--CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCc
Q 037733 1061 LSSLRKIEIRNCSSLVSFP--EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLL 1124 (1450)
Q Consensus 1061 l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1124 (1450)
+.+|+++.+.++....... ....|++++.|+|+.|-+..-.+-.-++..+|+|+.|+++.|.+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 4444555554444332211 233455555555555543322222222345666666666666554
No 37
>PF05729 NACHT: NACHT domain
Probab=98.86 E-value=1.1e-08 Score=106.26 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=88.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcccccccc----CCcEEEEEeCCccCHH---HHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDH----FDLKTWTCVSDDFDVI---RLTKAILTSIVAGQNVDNHDLNKLQVEL 288 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~l 288 (1450)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+.... ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQE- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHH-
Confidence 47899999999999999999875332222 3456676665544322 3333333333211 1111111111
Q ss_pred HHHhCCCcEEEEEeCCCCCChh-------hHHhhhccccC--CCCCcEEEEecCchHH---HHhcCCCCceeCCCCCHHH
Q 037733 289 NKQLSGKKFLLVLDDVWNENYN-------YWVEFSRPFEA--GAQGSKIIVTTRNHEV---AEIMGTVPPHPLKELSDND 356 (1450)
Q Consensus 289 ~~~l~~kr~LlVlDdv~~~~~~-------~~~~~~~~l~~--~~~gs~ilvTtr~~~v---~~~~~~~~~~~l~~L~~~~ 356 (1450)
..-+.++++||+|++++.... .+..+...+.. ..++++++||+|.... .........+++.+|++++
T Consensus 76 -~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 -LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred -HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 122578999999999764321 12232322222 2568999999999765 3444555679999999999
Q ss_pred HHHHHHhcc
Q 037733 357 CLAIFAQHS 365 (1450)
Q Consensus 357 ~~~lf~~~~ 365 (1450)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997753
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=1.1e-10 Score=131.16 Aligned_cols=193 Identities=24% Similarity=0.279 Sum_probs=155.3
Q ss_pred CCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEe
Q 037733 1189 NTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1189 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1268 (1450)
+..-...|++.|.+. .+|..+..+..|+.+.+..|.+- .+|..+.++..|+.|+|+.|. +..+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence 344456788888876 56778888889999999988866 467788899999999999998 456778888887 99999
Q ss_pred eccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCccccc
Q 037733 1269 LFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRL 1348 (1450)
Q Consensus 1269 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1348 (1450)
+++|++ +.+|+.+....+|..||.+.|.+.. +|..+..+.+|+.|++..|. +..+|+++..+
T Consensus 150 ~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~--------------l~~lp~El~~L-- 211 (722)
T KOG0532|consen 150 VSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNH--------------LEDLPEELCSL-- 211 (722)
T ss_pred EecCcc-ccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhh--------------hhhCCHHHhCC--
Confidence 998877 4788888888999999999999776 77889999999999999983 56777776433
Q ss_pred CCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC----CCccccccccccCC
Q 037733 1349 GNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK----GLPSSLLRLRLERC 1413 (1450)
Q Consensus 1349 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~L~l~~n 1413 (1450)
.|..||+|.|+ +..+|..|.+++.|++|-|.+|+ +++.|.. +.-.=.++|++.-|
T Consensus 212 --------pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 --------PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred --------ceeeeecccCc-eeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 58899999987 66789999999999999999997 5666643 33344567777666
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.9e-10 Score=124.70 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=72.7
Q ss_pred CccEEEecCCCchhhh--hhhcCCCCCccEEEeecccCccccC--ccccCCCCCcEEEEccCCCcc--chhcccCCCCCC
Q 037733 1167 SLKFLEVNSCSKLESV--AERLDNNTSLERIRIYFCENLKNLP--SGLHNLRQLREIRISLCSKLE--SIAERLDNNTSL 1240 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L 1240 (1450)
.|+.|+.++|...+.. .....++++|+.|.++.|+..+..- ..-.+.+.|+.+++..|.... .+...-.+|+.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 4555555555443321 1223445566666666665433210 111345666666666655431 222333456666
Q ss_pred CceecccCCCcccc-----cccccCCCccceEeeccCCCccc-cCCCCCCCCCcceEeeccCCCccc--CcccccCCCCC
Q 037733 1241 EKIDTSDCENLKIL-----PSGLHNLHQLREIILFRCGNLVS-FPEGGLPCAKLTRLEISYCKRLQA--LPKGLHNLTSL 1312 (1450)
Q Consensus 1241 ~~L~L~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L 1312 (1450)
+.|.+++|..+... ...-..+..|..+.+++|+.+.. .-+.+..|++|+.+++-+|..... +...-.++|++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 66666666554322 12223455566666666665432 112233456666666666554332 22233455555
Q ss_pred ceEEE
Q 037733 1313 QELRI 1317 (1450)
Q Consensus 1313 ~~L~l 1317 (1450)
++..+
T Consensus 455 ~v~a~ 459 (483)
T KOG4341|consen 455 KVHAY 459 (483)
T ss_pred eehhh
Confidence 54443
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=1.7e-07 Score=119.85 Aligned_cols=309 Identities=16% Similarity=0.207 Sum_probs=182.0
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEE---EEEeCCcc---CHHHHH
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKT---WTCVSDDF---DVIRLT 263 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~---~~~~~~ 263 (1450)
++||+.|++.+...+... ..+...++.+.|..|||||+++++|.. .+.+.+...+ +-....+. ...+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 789999999999999765 445667999999999999999999998 3333321111 11111111 123344
Q ss_pred HHHHHHhhcCC-------------------CC-------------------C--CCCHHH-----HHHHHHHHh-CCCcE
Q 037733 264 KAILTSIVAGQ-------------------NV-------------------D--NHDLNK-----LQVELNKQL-SGKKF 297 (1450)
Q Consensus 264 ~~i~~~l~~~~-------------------~~-------------------~--~~~~~~-----~~~~l~~~l-~~kr~ 297 (1450)
++++.++.... .. + ...... ....+.... +.|+.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 44444431110 00 0 000111 122222233 45699
Q ss_pred EEEEeCCCCCChhhHHhhhccccCCC----CCcEE--EEecCch--HHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCC
Q 037733 298 LLVLDDVWNENYNYWVEFSRPFEAGA----QGSKI--IVTTRNH--EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPR 369 (1450)
Q Consensus 298 LlVlDdv~~~~~~~~~~~~~~l~~~~----~gs~i--lvTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 369 (1450)
++|+||+.-.+....+-+........ ....| +.|.+.. .+.........+.|.||+..+...+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 99999995544333332221111111 01123 3333332 2222234447799999999999999988765555
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHhhhcCC------CCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHH
Q 037733 370 ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGK------HDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCF 443 (1450)
Q Consensus 370 ~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf 443 (1450)
....+....|+++..|+|+-+..+-..+... .+...|..-..+ ... ....+.+...+..-.+.||...|+.+
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~-~~~~~~vv~~l~~rl~kL~~~t~~Vl 314 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGI-LATTDAVVEFLAARLQKLPGTTREVL 314 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCC-chhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 5678899999999999999999998887763 233334322111 111 11112244568888999999999999
Q ss_pred hHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHHHHHHhcCCCccc-----CCCCC---cEEEcHHHHHH
Q 037733 444 AYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFFKELYSRSFFQQS-----SNNTS---RFVMHDLINDL 515 (1450)
Q Consensus 444 ~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~-----~~~~~---~~~mHdlv~~~ 515 (1450)
-..|++-. .|+.+.|...|-. ...+.+....+.|....++-.+ ..... +-..||.+++.
T Consensus 315 ~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 315 KAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 99999954 5667777666521 2345566666666655554321 11111 22478888888
Q ss_pred HHH
Q 037733 516 AKW 518 (1450)
Q Consensus 516 ~~~ 518 (1450)
|-.
T Consensus 382 aY~ 384 (849)
T COG3899 382 AYN 384 (849)
T ss_pred Hhc
Confidence 753
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=2.6e-10 Score=121.19 Aligned_cols=134 Identities=20% Similarity=0.166 Sum_probs=82.2
Q ss_pred CCCCccEEEeecccCccc----cCccccCCCCCcEEEEccCCCcc----chhcccCCCCCCCceecccCCCcc----ccc
Q 037733 1188 NNTSLERIRIYFCENLKN----LPSGLHNLRQLREIRISLCSKLE----SIAERLDNNTSLEKIDTSDCENLK----ILP 1255 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~L~~n~~~~----~~~ 1255 (1450)
+.+.|+++..++|.+-.. +...+...+.|+.+.++.|.+.. .+...+..|+.|+.|||.+|.+.. .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345555555555554321 12334455666666666666541 233456677777777777776653 233
Q ss_pred ccccCCCccceEeeccCCCccccCC----CC-CCCCCcceEeeccCCCccc----CcccccCCCCCceEEEeCCC
Q 037733 1256 SGLHNLHQLREIILFRCGNLVSFPE----GG-LPCAKLTRLEISYCKRLQA----LPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1256 ~~l~~l~~L~~L~l~~n~~~~~~~~----~~-~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
..++.+++|++|++++|.+...-.. .+ ...++|+.|.+.+|.++.. +...+...+.|+.|+|++|.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4567777888888888876542111 11 1147888888888887754 23345668889999999984
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=1e-09 Score=116.72 Aligned_cols=231 Identities=17% Similarity=0.098 Sum_probs=146.3
Q ss_pred CCccEEEecCCCchh----hhhhhcCCCCCccEEEeecccCccc----cC-------ccccCCCCCcEEEEccCCCccch
Q 037733 1166 PSLKFLEVNSCSKLE----SVAERLDNNTSLERIRIYFCENLKN----LP-------SGLHNLRQLREIRISLCSKLESI 1230 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~-------~~l~~l~~L~~L~l~~n~~~~~~ 1230 (1450)
.+++++++++|.+-. .+...+.+.++|+..++++- +++. +| ..+..++.|++|+||.|-+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 478888888887764 34455667778888887762 2221 22 23456778888888888876332
Q ss_pred h----cccCCCCCCCceecccCCCcccc-------------cccccCCCccceEeeccCCCccc----cCCCCCCCCCcc
Q 037733 1231 A----ERLDNNTSLEKIDTSDCENLKIL-------------PSGLHNLHQLREIILFRCGNLVS----FPEGGLPCAKLT 1289 (1450)
Q Consensus 1231 ~----~~~~~~~~L~~L~L~~n~~~~~~-------------~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~ 1289 (1450)
+ ..+.++++|++|.|.+|.+...- ......-+.|+.+...+|.+-.. +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 2 34566888888888888754211 11234556788888888765321 122333457888
Q ss_pred eEeeccCCCccc----CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccc
Q 037733 1290 RLEISYCKRLQA----LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISR 1365 (1450)
Q Consensus 1290 ~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 1365 (1450)
.+.+..|.+... +...+..+++|++|||..|.+ ... ....+..+++..++|+.|++++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-----t~e-------------gs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-----TLE-------------GSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchh-----hhH-------------HHHHHHHHhcccchheeecccc
Confidence 888888876543 234577888888888888831 111 1223344455667888888888
Q ss_pred cCCCccc----cc-cCCCCCCCCeeeccCCCCCCCC----CC-CCCccccccccccCChh
Q 037733 1366 FPNLERL----SS-SIVDLQNLTELIIEDCPKLKYF----PE-KGLPSSLLRLRLERCPL 1415 (1450)
Q Consensus 1366 n~~~~~~----~~-~~~~l~~L~~L~l~~n~~~~~~----~~-~~~~~~L~~L~l~~n~l 1415 (1450)
|.+...- .. .-...|+|+.|.+.+|.+...- .. ....+.|.+|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8655421 11 2234688899999988654321 11 12367788999999988
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=2.5e-09 Score=110.23 Aligned_cols=220 Identities=20% Similarity=0.154 Sum_probs=132.8
Q ss_pred CCccEEEecCCCc--------hhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCC
Q 037733 1166 PSLKFLEVNSCSK--------LESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNN 1237 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~--------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 1237 (1450)
..|..|.++...- ...+|..+.-+.+|..+.++.|.-..+. .....-|.|+.+.+.+..... .| .+-..
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~-~l~pe 258 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VP-SLLPE 258 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc-cc-cccch
Confidence 4677777765321 1233444455677777777777644321 112233567777776543321 11 11111
Q ss_pred CCCCceecccCC-CcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEE
Q 037733 1238 TSLEKIDTSDCE-NLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELR 1316 (1450)
Q Consensus 1238 ~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 1316 (1450)
..+..+..+.-. ..+..-..+..+..|+++++++|.+. .+.++..-.|.++.|++|+|.+...- .++.+++|+.||
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LD 335 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLD 335 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEee
Confidence 122222111111 11222234456778999999999875 34444444689999999999988742 388899999999
Q ss_pred EeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCC
Q 037733 1317 IIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYF 1396 (1450)
Q Consensus 1317 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1396 (1450)
+|+|. ++.|+. +- ..+-++++|.|++|.+-. + ++++++-+|..||+++|+ ++.+
T Consensus 336 LS~N~-------Ls~~~G----wh------------~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~-Ie~l 389 (490)
T KOG1259|consen 336 LSGNL-------LAECVG----WH------------LKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQ-IEEL 389 (490)
T ss_pred cccch-------hHhhhh----hH------------hhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccc-hhhH
Confidence 99992 222211 11 123478889999986332 2 357888899999999995 4544
Q ss_pred CC---CCCccccccccccCChhhH
Q 037733 1397 PE---KGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1397 ~~---~~~~~~L~~L~l~~n~l~~ 1417 (1450)
.+ .+.++.|+.+.+.+||+..
T Consensus 390 deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 390 DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HHhcccccccHHHHHhhcCCCccc
Confidence 43 3778889999999999854
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.73 E-value=1.5e-06 Score=104.76 Aligned_cols=177 Identities=14% Similarity=0.050 Sum_probs=108.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cccCC--cEEEEEeCCccCHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV---QDHFD--LKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~~ 262 (1450)
..+.|||+|+++|...|...-. +.+...++.|+|++|.|||+.++.|.+.... +.... .+++|.+..-.+...+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 5688999999999999965422 2233467889999999999999999874311 11112 3567777776778888
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-C--CCcEEEEEeCCCCCChhhHHhhhccccC-CCCCcEEEE--ecCch-
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQL-S--GKKFLLVLDDVWNENYNYWVEFSRPFEA-GAQGSKIIV--TTRNH- 335 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilv--Ttr~~- 335 (1450)
+..|..++............+....+...+ . +...+||||+|+.-....-+.+...+.+ ...+++|+| +|...
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999998885544323333344444555444 2 2345899999965321111122222221 124556554 34321
Q ss_pred -------HHHHhcCCCCceeCCCCCHHHHHHHHHhccC
Q 037733 336 -------EVAEIMGTVPPHPLKELSDNDCLAIFAQHSL 366 (1450)
Q Consensus 336 -------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 366 (1450)
.+...++ ...+...|.+.++-.+++..++.
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 1222222 23467799999999999988765
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=7.3e-09 Score=106.93 Aligned_cols=199 Identities=19% Similarity=0.069 Sum_probs=122.4
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEcc-CCCccchhcccCCCCCCCcee
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISL-CSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
.+|..+.++.|.-..+.. ....-|.|+++.+.+..+... | .+-....+.-+.-+. ....+.....+.....|++||
T Consensus 214 ~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred hhhheeeeeccchhheec-eeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 466666666665433221 122336677777766443321 1 111111121111111 111233333445566789999
Q ss_pred cccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1245 TSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
|++|.+.. +..+..-+|.++.|++++|.+...- .+..+++|+.||||+|.+.. +..+-..+-+.++|.+++|.
T Consensus 291 LS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~--- 363 (490)
T KOG1259|consen 291 LSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNK--- 363 (490)
T ss_pred ccccchhh-hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhh---
Confidence 99987544 4456777888999999999886442 35557899999999988776 44556678889999999982
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCcc-ccccCCCCCCCCeeeccCCCCCCC
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLER-LSSSIVDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 1395 (1450)
.-.++| +..+-+|..||+++|++-.. -...++++|.|+.|.|.+||+...
T Consensus 364 -iE~LSG--------------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 364 -IETLSG--------------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -Hhhhhh--------------------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 111222 23456899999999974432 124699999999999999986443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1e-09 Score=123.35 Aligned_cols=134 Identities=27% Similarity=0.311 Sum_probs=101.2
Q ss_pred hhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCC
Q 037733 1182 VAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNL 1261 (1450)
Q Consensus 1182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 1261 (1450)
+|..+.++..|..|+|+.|++. .+|..+..|+ |+.|-+++|+++ .+|..++..+.|..||.+.|.+ ..+|..+..+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l 188 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYL 188 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhH
Confidence 4455667777888888888776 4566677776 888888887766 4566667778888888888874 4566778888
Q ss_pred CccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCC
Q 037733 1262 HQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSP 1322 (1450)
Q Consensus 1262 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1322 (1450)
.+|+.|.+..|++. .+|+.+.. -.|..||+|+|++.. +|..|.+|+.|++|-|.+|++
T Consensus 189 ~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceee-cchhhhhhhhheeeeeccCCC
Confidence 88888888888775 55666664 468888888888766 788888888888888888863
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=5.3e-07 Score=97.71 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=97.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
+.+.++|++|+|||+||+++++. .......+.|+.+... ..... .+.+.++ +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~----------------------~~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP----------------------AVLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH----------------------HHHhhcc-c
Confidence 57899999999999999999984 3222334566665311 00000 1111122 2
Q ss_pred cEEEEEeCCCCCC-hhhHHh-hhccccC-CCCCcEEE-EecCc---------hHHHHhcCCCCceeCCCCCHHHHHHHHH
Q 037733 296 KFLLVLDDVWNEN-YNYWVE-FSRPFEA-GAQGSKII-VTTRN---------HEVAEIMGTVPPHPLKELSDNDCLAIFA 362 (1450)
Q Consensus 296 r~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~il-vTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1450)
.-+||+||+|... ...|+. +...+.. ...|..+| +|++. +++...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 245553 2222222 12355564 45544 4666666667789999999999999999
Q ss_pred hccCCC-CchhHHHHHHHHHHhCCChHHHHHHHhhh
Q 037733 363 QHSLGP-RELLDEIGKKLVSKCGGLPLAAQTLGGLL 397 (1450)
Q Consensus 363 ~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~L 397 (1450)
+.+... -..-+++..-|++.+.|..-++..+-..|
T Consensus 172 ~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 887533 23457788899999998776665554433
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.3e-08 Score=102.66 Aligned_cols=126 Identities=21% Similarity=0.096 Sum_probs=38.5
Q ss_pred CCCCccEEEeecccCccccCcccc-CCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccc-cCCCccc
Q 037733 1188 NNTSLERIRIYFCENLKNLPSGLH-NLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGL-HNLHQLR 1265 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~l~~L~ 1265 (1450)
++.++++|+|++|.+... +.+. .+.+|+.|++++|.+... +.+..++.|++|++++|.+... ...+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 344566666666666542 2333 356666666666666542 2355566666666666665443 2223 3466677
Q ss_pred eEeeccCCCcccc-CCCCCCCCCcceEeeccCCCcccC---cccccCCCCCceEEEe
Q 037733 1266 EIILFRCGNLVSF-PEGGLPCAKLTRLEISYCKRLQAL---PKGLHNLTSLQELRII 1318 (1450)
Q Consensus 1266 ~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l~ 1318 (1450)
+|++++|.+...- -..+..+++|+.|++.+|++.... ...+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7777666654311 112334667777777777766431 1235667788777643
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.59 E-value=2.1e-07 Score=101.97 Aligned_cols=169 Identities=22% Similarity=0.285 Sum_probs=105.2
Q ss_pred CCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 185 VNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
+.+.+++|.+..+.++++ . +.+.-..+||++|+||||||+.++. .....| ..++...+-.+-++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 445666776666655544 2 3456677999999999999999998 444444 23333222222222
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCchHH---HH
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV--TTRNHEV---AE 339 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~~v---~~ 339 (1450)
++++.. -+....+++.+|.+|.|..-+..+.+.+. |.-..|.-|+| ||.++.. ..
T Consensus 91 ~i~e~a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 91 EIIEEA-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHH-----------------HHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHH
Confidence 222211 12233589999999999776544444443 44456777777 6666532 12
Q ss_pred hcCCCCceeCCCCCHHHHHHHHHhccCCCCc--------hhHHHHHHHHHHhCCChHH
Q 037733 340 IMGTVPPHPLKELSDNDCLAIFAQHSLGPRE--------LLDEIGKKLVSKCGGLPLA 389 (1450)
Q Consensus 340 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--------~~~~~~~~i~~~~~G~PLa 389 (1450)
......++.+++|+.+|-.+++.+.+..... ..++....|++.++|---+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 2345578999999999999999873322111 2345777788999986543
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=3.3e-08 Score=99.77 Aligned_cols=78 Identities=22% Similarity=0.161 Sum_probs=16.4
Q ss_pred CCCceecccCCCccccccccc-CCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEE
Q 037733 1239 SLEKIDTSDCENLKILPSGLH-NLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRI 1317 (1450)
Q Consensus 1239 ~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 1317 (1450)
.+++|+|++|.+... +.+. .+.+|+.|++++|.+... +++..++.|+.|++++|.+....+.....+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 445555555543321 1222 344555555555554322 13334455555555555555422211134555555555
Q ss_pred eCC
Q 037733 1318 IGD 1320 (1450)
Q Consensus 1318 ~~n 1320 (1450)
++|
T Consensus 96 ~~N 98 (175)
T PF14580_consen 96 SNN 98 (175)
T ss_dssp TTS
T ss_pred cCC
Confidence 555
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=1.6e-06 Score=103.18 Aligned_cols=173 Identities=23% Similarity=0.259 Sum_probs=104.3
Q ss_pred cceecchhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQ---VIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
.++||++..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 357888777555 66666433 3456788999999999999999983 22222 22221111111111
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCchH--HH-
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV--TTRNHE--VA- 338 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~~--v~- 338 (1450)
+++. .... ...+++.+|++|+++.-.....+.+...+. .|..++| ||.+.. +.
T Consensus 79 ~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 2211 1111 124578899999998766555666655443 2445554 344432 11
Q ss_pred HhcCCCCceeCCCCCHHHHHHHHHhccCC---CC-chhHHHHHHHHHHhCCChHHHHHHH
Q 037733 339 EIMGTVPPHPLKELSDNDCLAIFAQHSLG---PR-ELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 339 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~-~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
........+.+.+++.++.+.++.+.+.. .. ...++....|++.|+|.+..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11222367899999999999999875422 11 2346678889999999997665443
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.3e-07 Score=118.13 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=63.8
Q ss_pred CcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeecc
Q 037733 1216 LREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISY 1295 (1450)
Q Consensus 1216 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 1295 (1450)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555556666666555555555555666666666666666555665555666666666666
Q ss_pred CCCcccCcccccCC-CCCceEEEeCCCCcc
Q 037733 1296 CKRLQALPKGLHNL-TSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1296 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~ 1324 (1450)
|.+.+.+|..+... .++..+++.+|+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 66666666555442 355666777775444
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.5e-06 Score=96.60 Aligned_cols=179 Identities=17% Similarity=0.230 Sum_probs=118.6
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc----cccccCCcEEEEEe-CCccCHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD----RVQDHFDLKTWTCV-SDDFDVIRLT 263 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~ 263 (1450)
+++|-+..++.+..++..+. -.....++|+.|+||||+|+.+++.. ....|.|...|... +....+.+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 57899999999999986543 24677899999999999999998732 22346666566542 22223322 2
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHH-Hh-c
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVA-EI-M 341 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~-~~-~ 341 (1450)
+++.+.+... -..+++-++|+|+++..+...++.+...+.....++.+|++|.+.+.. .. .
T Consensus 79 r~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2222322211 112456678888887767788999988888777788888888654321 11 1
Q ss_pred CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
.....+.+.++++++....+.+...+ ...+.+..++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22367899999999998877654322 12455778899999998765433
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.2e-09 Score=108.91 Aligned_cols=181 Identities=20% Similarity=0.255 Sum_probs=112.6
Q ss_pred CCccEEEeecCCCccc-cCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1038 CRLEYLGLSHCEGLVK-LPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
+.|++||||+..++.+ +...+..|.+|+.|.+.+++....+. .+..-.+|+.|+++.|...+.........+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4688899998777542 23345678999999999988876554 667778899999999987776655555578888999
Q ss_pred EEeeccCCcccccC---CCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCc
Q 037733 1116 LCVLHCQLLTYIAG---VQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSL 1192 (1450)
Q Consensus 1116 L~l~~n~~~~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 1192 (1450)
|+++.|........ ...-++|+.|++++|.... ....+......+++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------------------~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------------------QKSHLSTLVRRCPNL 315 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------------------hhhHHHHHHHhCCce
Confidence 99988876643321 1223445555555542110 001222223456666
Q ss_pred cEEEeecccCccc-cCccccCCCCCcEEEEccCCCccchhc---ccCCCCCCCceecccCC
Q 037733 1193 ERIRIYFCENLKN-LPSGLHNLRQLREIRISLCSKLESIAE---RLDNNTSLEKIDTSDCE 1249 (1450)
Q Consensus 1193 ~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~L~~n~ 1249 (1450)
.+|||++|..... .-..|..++.|++|.++.|... +|. .+...|+|.+|++.+|-
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 6666666654432 1123445667777777776543 222 34556777777777764
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.3e-06 Score=96.16 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=110.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.......... .+...-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 458999999999999886542 2456789999999999999999874211111100 0000000000110
Q ss_pred HHh----hcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHH
Q 037733 268 TSI----VAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEV 337 (1450)
Q Consensus 268 ~~l----~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v 337 (1450)
... ..-........++... +.+.+ .+++-++|+|+++......++.+...+.......++|++|.+ ..+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 000 0000000011122111 11111 245569999999887666777777776655566677766654 333
Q ss_pred HHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 338 AEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
... .+....+++.+++.++..+.+...+... ....++.+..|++.++|.|-.+.
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 322 2233678999999999988877644321 12345677889999999885443
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.2e-06 Score=93.87 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhc
Q 037733 193 REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVA 272 (1450)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1450)
.+..++.+..++... ....+.|+|++|+|||++|+.+++.. .......+++++..-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 445666777765322 34678899999999999999999842 22333455655432211 00
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh-hHH-hhhccccC-CCCCcEEEEecCchH---------HHHh
Q 037733 273 GQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYN-YWV-EFSRPFEA-GAQGSKIIVTTRNHE---------VAEI 340 (1450)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~~~~~l~~-~~~gs~ilvTtr~~~---------v~~~ 340 (1450)
. .+...+.+ .-+||+||++..... .|. .+...+.. ...+.+||+||+... +...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 238999999764322 233 23332221 123457889887532 2223
Q ss_pred cCCCCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHHHhh
Q 037733 341 MGTVPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTLGGL 396 (1450)
Q Consensus 341 ~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 396 (1450)
+.....+++.++++++...++...+.. .....++..+.|++.+.|.|..+.-+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333457899999999999988765421 11234567788888899998877666433
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5e-06 Score=99.32 Aligned_cols=193 Identities=13% Similarity=0.139 Sum_probs=112.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||.+...+.+..++..+. -...+.++|+.|+||||+|+.+++...-.. |+.. .+...-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999996543 246788999999999999999987321110 1100 0000000000110
Q ss_pred HHhhcC----CCCCCCCHHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQVELNK----QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~ 338 (1450)
..-... ........+++...+.. -..+++-++|+|+|+.-+...+..+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000 00001122222222211 123566789999998876677777777666555667777766553 222
Q ss_pred -HhcCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHH
Q 037733 339 -EIMGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 339 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
........+++++++.++..+.+.+.+... .....+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 112334679999999999988887654322 224466778899999997754443
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=3.2e-07 Score=114.70 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=53.0
Q ss_pred ccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceeccc
Q 037733 1168 LKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSD 1247 (1450)
Q Consensus 1168 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 1247 (1450)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555554555555555555555555555555555555555555555
Q ss_pred CCCcccccccccCC-CccceEeeccCC
Q 037733 1248 CENLKILPSGLHNL-HQLREIILFRCG 1273 (1450)
Q Consensus 1248 n~~~~~~~~~l~~l-~~L~~L~l~~n~ 1273 (1450)
|.+.+.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55444444444321 233344444443
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.39 E-value=4.3e-06 Score=98.07 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=109.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++-.+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 45899999999999988543 234578999999999999999987421 11221 2334443321100 00000
Q ss_pred H------HHhhcCCCCCCCCHHHHHHHHHHH---h--CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 267 L------TSIVAGQNVDNHDLNKLQVELNKQ---L--SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 267 ~------~~l~~~~~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
. ..+...........+.....+... . .+.+-+||+||+.......+..+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000000001112222222111 1 2345589999997654444555555444444557787776543
Q ss_pred -HHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHH
Q 037733 336 -EVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 336 -~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
.+...+ .....+++.+++.++....+...+.... ....+.++.+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222222 2235688899999998888877543221 23467888899999997655543
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.2e-05 Score=97.20 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=114.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------------------CCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH-------------------FDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 248 (1450)
.++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-... |..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999986542 2456679999999999999988874211111 1112
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCC
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQ 324 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 324 (1450)
+++..+.. ...+++.+.+... ..++.-++|||+++..+...|..++..+.....
T Consensus 91 iEIDAas~----------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 91 VEMDAASN----------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEeccccc----------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 22221111 1122222222211 134556899999988877788888777765556
Q ss_pred CcEEEEecCch-HHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCCh-HHHHHHH
Q 037733 325 GSKIIVTTRNH-EVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLP-LAAQTLG 394 (1450)
Q Consensus 325 gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~P-Lai~~~~ 394 (1450)
..++|+||++. .+... ......+.+++++.++..+.+.+.+.... ....+....|++.++|.. -|+..+-
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77877777664 33211 12236799999999999988877553221 234677888999999865 4554433
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=6.2e-06 Score=101.68 Aligned_cols=182 Identities=15% Similarity=0.154 Sum_probs=114.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------------------CCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH-------------------FDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 248 (1450)
.++||-+..++.|..++..+.. ...+.++|+.|+||||+|+.+++...-... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4689999999999998865422 355689999999999999999974211111 1111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSK 327 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 327 (1450)
+++....... ..+..++...+.. -..+++-++|||++.......++.++..+-......+
T Consensus 91 iEidAas~~k-------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 91 IEVDAASRTK-------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEeccccccC-------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 2221111011 1111222222211 1246778999999988877788888777765555666
Q ss_pred EEEecCc-hHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHHH
Q 037733 328 IIVTTRN-HEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 328 ilvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
+|++|.+ ..+... ......|++++++.++..+.+.+.+-.. .....+.+..|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6655544 444322 2233679999999999998887754221 1234667888999999988644433
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=2.4e-06 Score=87.80 Aligned_cols=181 Identities=21% Similarity=0.178 Sum_probs=95.5
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+|||-+.-++.+.-++..... .+..+.-+.+||++|+||||||.-++++ ....|. +++...-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SC--------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhH--------
Confidence 5699999888876655543211 2345677889999999999999999983 444442 2222110001
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccC--------CCC-----------CcEE
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEA--------GAQ-----------GSKI 328 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~--------~~~-----------gs~i 328 (1450)
.+++..+.. + +++-+|.+|.+..-+...-+.+..++.+ .+. -+-|
T Consensus 90 --------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 --------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp --------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred --------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 112222211 2 2355777788876543333333222211 111 1233
Q ss_pred EEecCchHHHHhcCCC-Cc-eeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHHHhhhc
Q 037733 329 IVTTRNHEVAEIMGTV-PP-HPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTLGGLLR 398 (1450)
Q Consensus 329 lvTtr~~~v~~~~~~~-~~-~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~ 398 (1450)
=-|||...+...+... .. .+++..+.+|-.++..+.+.. ..+..++.+.+|++.+.|-|--+.-+-+..+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4588876554433322 22 479999999999999876643 2235678999999999999965554444433
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=7.4e-07 Score=87.98 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=79.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc---ccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQ---DHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
-+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+..+++.++..... ...+..++...+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 4689999999999999999999843110 002356799988888999999999999987765 345667777777777
Q ss_pred hCCCc-EEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCc
Q 037733 292 LSGKK-FLLVLDDVWNE-NYNYWVEFSRPFEAGAQGSKIIVTTRN 334 (1450)
Q Consensus 292 l~~kr-~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~ 334 (1450)
+...+ .+||+|+++.- ....++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 59999999654 4444444433333 567777777664
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.35 E-value=8.3e-07 Score=93.90 Aligned_cols=48 Identities=31% Similarity=0.406 Sum_probs=32.9
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD 239 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1450)
+||||+++++++...|... .....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999522 34456899999999999999999999843
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=3.6e-07 Score=109.60 Aligned_cols=180 Identities=23% Similarity=0.234 Sum_probs=108.9
Q ss_pred CCCccEEEeecccCccccCccccCCC-CCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceE
Q 037733 1189 NTSLERIRIYFCENLKNLPSGLHNLR-QLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREI 1267 (1450)
Q Consensus 1189 l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 1267 (1450)
.+.+..|++.+|.+.. ++.....+. +|+.|++++|.+.. +|..+..+++|+.|++++|++.. +|......++|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 3567777777766663 334444443 67777777777654 33445667777777777777443 34444466777777
Q ss_pred eeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccc
Q 037733 1268 ILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIR 1347 (1450)
Q Consensus 1268 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1450)
++++|.+. .+|........|++|.+++|+... .+..+..+.++..+.+.+|... .++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~--------------~~~------- 248 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE--------------DLP------- 248 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee--------------ecc-------
Confidence 77777664 444433233457777777775433 3445677777777776666211 111
Q ss_pred cCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCC
Q 037733 1348 LGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPE 1398 (1450)
Q Consensus 1348 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 1398 (1450)
.....++++++|++++|.+.. ++. +..+.+|+.|++++|.....++.
T Consensus 249 --~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 --ESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --chhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 122355667788888776443 333 77777888888888766555443
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.35 E-value=3.2e-07 Score=110.09 Aligned_cols=102 Identities=32% Similarity=0.473 Sum_probs=92.5
Q ss_pred HhccccccEEEecCCCCCcCCcCccCCC-ccceeeccCCCcccccccccccCCccEEecCCCCchhHhhhhhhhhcccCc
Q 037733 592 LLKLQRLRVFSLCGYHISKLPDSIGDLR-YLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHH 670 (1450)
Q Consensus 592 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 670 (1450)
+..+..+..|++.++.+.++|..++.+. +|++|++++|.|..+|..++.+++|+.|++++ +.+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence 3466889999999999999999898885 99999999999999999999999999999999 689999998889999999
Q ss_pred ccccCCCCCccCCCCCCCccccccc
Q 037733 671 LKNSNTHSLEEMPLGIGKLTCLQTL 695 (1450)
Q Consensus 671 L~l~~~~~l~~lp~~i~~L~~L~~L 695 (1450)
|+++++. +..+|..++.+..|++|
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEEL 214 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhh
Confidence 9999998 89999877777778777
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=98.33 E-value=2.3e-05 Score=95.30 Aligned_cols=246 Identities=15% Similarity=0.113 Sum_probs=138.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|.++.++++.+|+..... +...+.+.|+|++|+||||+|++++++. .|+ .+-+++++..+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHH
Confidence 5699999999999999965421 1226789999999999999999999843 132 223344432222 2222222
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh----hhHHhhhccccCCCCCcEEEEecCch-HHHH-hc
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY----NYWVEFSRPFEAGAQGSKIIVTTRNH-EVAE-IM 341 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~-~~ 341 (1450)
........ ....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211110 0113678999999976432 234445444432 234566666432 1111 11
Q ss_pred -CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHHhhhcCC-C--CHHHHHHHHhccccc
Q 037733 342 -GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGK-H--DRRVWEGVLSSKIWE 416 (1450)
Q Consensus 342 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~-~--~~~~w~~~l~~~~~~ 416 (1450)
.....+++.+++.++....+.+.+.... ....++...|++.++|..-.+......+... . +.+.-..+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~----- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR----- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-----
Confidence 2235688999999998888776553221 2346788999999999876665444333332 1 1222222221
Q ss_pred CCccccChhhHHHHhhc-CCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccC
Q 037733 417 LPEERCGIIPALAVSYY-YLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDH 472 (1450)
Q Consensus 417 ~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 472 (1450)
.+...+++.++..-+. .-+......+..+ .++. ..+..|+.+.+...
T Consensus 224 -~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1122456666665554 2233333322221 1222 35778999998754
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2e-06 Score=103.24 Aligned_cols=197 Identities=18% Similarity=0.140 Sum_probs=113.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|-+..++.+..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+-.. +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 458999999999988886542 24567999999999999999998743222222223333221000 000000000
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecC-chHHHHhc-CCC
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTR-NHEVAEIM-GTV 344 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr-~~~v~~~~-~~~ 344 (1450)
..+.........+..++...+.. -..+++-++|+|+++......+..+...+......+.+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00000000011111122221211 1235667999999987766778888777765545556555554 33332222 233
Q ss_pred CceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHH
Q 037733 345 PPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 390 (1450)
..+++.+++.++..+.+.+.+.... ...++.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 5799999999999999887653222 234677889999999988544
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.31 E-value=4.3e-06 Score=84.89 Aligned_cols=124 Identities=17% Similarity=0.104 Sum_probs=72.5
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 191 YGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
+|++..++.+...+... ..+.+.|+|++|+||||+|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999998888543 236788999999999999999998432 222345666654433322111111000
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh---hhHHhhhccccCC---CCCcEEEEecCch
Q 037733 271 VAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY---NYWVEFSRPFEAG---AQGSKIIVTTRNH 335 (1450)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~~~l~~~---~~gs~ilvTtr~~ 335 (1450)
............++.++|+||++.... ..+.......... ..+.+||+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 011111223345678999999985322 2222222222221 3678888888865
No 70
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=1.1e-06 Score=97.25 Aligned_cols=285 Identities=15% Similarity=0.137 Sum_probs=176.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCc-EEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDL-KTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
..+-+.++|.|||||||++-.+.. ++..|.. +.++....-.|...+.-.....+..... +-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 357899999999999999999987 5566754 4455555444555555555555554432 1122344566677
Q ss_pred CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhcCCCCceeCCCCCHH-HHHHHHHhccCCC---
Q 037733 293 SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMGTVPPHPLKELSDN-DCLAIFAQHSLGP--- 368 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~--- 368 (1450)
.++|.++|+||-.... ..-......+..+...-.|+.|+|.... ......+.+.+|+.. ++.++|...+...
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 8899999999983321 1112233334444555678888887532 233456778888765 7889987665321
Q ss_pred ---CchhHHHHHHHHHHhCCChHHHHHHHhhhcCCCC-------HHHHHHHHhcccccCCccccChhhHHHHhhcCCChh
Q 037733 369 ---RELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHD-------RRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPT 438 (1450)
Q Consensus 369 ---~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~-------~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 438 (1450)
.........+|.++.+|.|++|..+++..+.-.. .+.|+..-.- ............+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH
Confidence 1245678889999999999999999988876422 1222222111 1111112245677899999999999
Q ss_pred HHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHHHHHHhcCCCcccC-CCCCcEEEcHHHHHHHH
Q 037733 439 LRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFFKELYSRSFFQQSS-NNTSRFVMHDLINDLAK 517 (1450)
Q Consensus 439 ~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-~~~~~~~mHdlv~~~~~ 517 (1450)
.+-.|.-++.|...+.-. ...|.+-|-.. ....-..-..+..+++++++...+ .+...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998776544 34455544211 011223344567788888876533 22334555566666655
Q ss_pred Hh
Q 037733 518 WA 519 (1450)
Q Consensus 518 ~~ 519 (1450)
.+
T Consensus 312 ae 313 (414)
T COG3903 312 AE 313 (414)
T ss_pred HH
Confidence 43
No 71
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.4e-06 Score=85.02 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
+++.|.|+.|+||||++++++++.. .-..+++++..+....... +.+ ..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999997432 2345677766543321100 000 223334444447
Q ss_pred cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhc------CCCCceeCCCCCHHHH
Q 037733 296 KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIM------GTVPPHPLKELSDNDC 357 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~------~~~~~~~l~~L~~~~~ 357 (1450)
+.+|+||++... ..|......+.......+|++|+........- +....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999766 66877777776665678999999987665321 2234578899988774
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=95.85 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=113.3
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--CCcEEEEEeCCccCHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH--FDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++...-... -.... +.....-...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 469999999999999996553 2456789999999999999999873211000 00000 000000000111
Q ss_pred HHHH-----hhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCch
Q 037733 266 ILTS-----IVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII-VTTRNH 335 (1450)
Q Consensus 266 i~~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtr~~ 335 (1450)
|... +..... .....+++.+.+... ..++.-++|||+++..+...++.++..+..-..++++| +||...
T Consensus 87 I~aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 87 IDAGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHcCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 1000 000000 111223333222221 24566799999998887778888887776544566655 455544
Q ss_pred HHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHHH
Q 037733 336 EVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 336 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
.+...+ .....+.++.++.++..+.+.+.+... .....+..+.|++.++|.|.....+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 443222 223678999999999988887654221 1233556788999999998654443
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2e-05 Score=94.04 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=113.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCc-EEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDL-KTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++...-...... -.+..+....+ ...+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHH
Confidence 458999999988888775542 2357889999999999999999874211111000 00000000000 0000
Q ss_pred HHH-------hhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCc
Q 037733 267 LTS-------IVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRN 334 (1450)
Q Consensus 267 ~~~-------l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~ 334 (1450)
... +... .....+++...+... ..+++-++|+|+++.-....|..+...+......+.+|+ ||+.
T Consensus 92 ~~~~h~Dv~eidaa---s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 92 NNHNHPDIIEIDAA---SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred hcCCCCcEEEeecc---CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 000 0000 111222222222211 245677899999988777788888877765555666554 5555
Q ss_pred hHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHH
Q 037733 335 HEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 335 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 390 (1450)
..+...+ .....+++++++.++....+.+.+.... ....+....|++.++|.+--+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 5554433 2336789999999999999887664322 234567788999999977444
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-05 Score=94.82 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=112.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccCCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ-------------------DHFDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 248 (1450)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 458999999999999886542 23567899999999999999998632100 011122
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSK 327 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 327 (1450)
+++.......+. +..++.+.+.. -..+++-++|+|+++..+...++.+...+......+.
T Consensus 91 ieidaas~~gvd-------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGVE-------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCHH-------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 222221111111 11222222221 1245677999999987776778888777766555666
Q ss_pred EE-EecCchHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChH-HHHHHH
Q 037733 328 II-VTTRNHEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPL-AAQTLG 394 (1450)
Q Consensus 328 il-vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 394 (1450)
+| +||....+... ......+++++++.++....+.+.+.. .....++....|++.++|.+- |+..+-
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55 45544444322 233467999999999988777653321 122345667889999999664 444443
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.24 E-value=1.8e-05 Score=91.04 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=105.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|.++.++.+..++..+ +.+-+.++|++|+||||+|+.+++.. ....|. .++-+..++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 45889998888888877543 23446799999999999999998742 112222 11112222222221 12222
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHHHhc-CCC
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVAEIM-GTV 344 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~ 344 (1450)
+........ . .-.++.-++|+|+++.-.......+...+......+++|+++... .+...+ ...
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 221111000 0 002356699999998776555555655554444567777766442 221111 122
Q ss_pred CceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHH
Q 037733 345 PPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 390 (1450)
..++++++++++....+...+-... ...++....|++.++|..-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 5689999999999888876653221 234667888999999876433
No 76
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.24 E-value=1e-05 Score=86.64 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=96.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1450)
....+.+||++|+||||||+.+....+... ..||..|....-..-.++|+++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhh
Confidence 466788999999999999999998533222 5567766554444444444443321 12356
Q ss_pred CCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCchHH---HHhcCCCCceeCCCCCHHHHHHHHHhccC--
Q 037733 294 GKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV--TTRNHEV---AEIMGTVPPHPLKELSDNDCLAIFAQHSL-- 366 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 366 (1450)
++|.+|.+|.|..-+..+.+. .+|.-..|.-++| ||.++.. +..+....++.|++|..++-..++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999996643332232 3455567877776 7776532 22234457889999999999888876321
Q ss_pred CC----C----c----hhHHHHHHHHHHhCCChH
Q 037733 367 GP----R----E----LLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 367 ~~----~----~----~~~~~~~~i~~~~~G~PL 388 (1450)
+. . + ....+.+-++..|+|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 1 1 234566777788888653
No 77
>PTZ00202 tuzin; Provisional
Probab=98.24 E-value=4.9e-05 Score=85.27 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=104.1
Q ss_pred CCCCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHH
Q 037733 183 SLVNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1450)
.+.+.+.|+||++|..++...|...+. +..+++.|+|++|+|||||++.+..... ...++.... +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHH
Confidence 345567899999999999999965432 2456999999999999999999997432 123333223 67899
Q ss_pred HHHHHHHhhcCCCCCCCC-HHHHHHHHHHHh--CCCcEEEEEeCCCCCCh-hhHHhhhccccCCCCCcEEEEecCchHHH
Q 037733 263 TKAILTSIVAGQNVDNHD-LNKLQVELNKQL--SGKKFLLVLDDVWNENY-NYWVEFSRPFEAGAQGSKIIVTTRNHEVA 338 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 338 (1450)
++.++.+++.+......+ .+.+.+.+.+.- ++++.+||+-==...+. ..+.+. ..+.....-|+|++---.+.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 999999999643312111 233444443322 36777777743222111 112222 1233445567787755443322
Q ss_pred Hh---cCCCCceeCCCCCHHHHHHHHHhc
Q 037733 339 EI---MGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 339 ~~---~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
-. ...-.-|.+.+++.++|.+.-.+.
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 122245888999999998876554
No 78
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=4.4e-05 Score=87.43 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=117.6
Q ss_pred CCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--cCCcEEEEEeCCccCHHHHH
Q 037733 186 NKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD--HFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~ 263 (1450)
....++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+++..--.. .+.... ...+.......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHH
Confidence 34569999999999999996553 245788999999999999999887321100 011110 00011111122
Q ss_pred HHHHHH-------hhcCCCC------CCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCC
Q 037733 264 KAILTS-------IVAGQNV------DNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQG 325 (1450)
Q Consensus 264 ~~i~~~-------l~~~~~~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 325 (1450)
+.+... +..+... ..-..+++. .+.+.+ .+++-++|+|+++..+....+.+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 222221 1000000 111233332 333333 356779999999887777777777666544444
Q ss_pred cEE-EEecCchHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 326 SKI-IVTTRNHEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 326 s~i-lvTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
..+ ++|++...+.... .....+++.+++.++..+++........ ..++.+..|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4554443332222 2236799999999999999987432222 235667889999999998665443
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=4.4e-05 Score=88.00 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=115.0
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEE------EEEeCCccCHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKT------WTCVSDDFDVI 260 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~ 260 (1450)
..+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++..--........ -..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 4569999999999999986653 245788999999999999998876321111000000 00000000
Q ss_pred HHHHHHHHHhhc-------C--CC----CCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCC
Q 037733 261 RLTKAILTSIVA-------G--QN----VDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAG 322 (1450)
Q Consensus 261 ~~~~~i~~~l~~-------~--~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 322 (1450)
...+.+...-.. . .. ...-..+++ ..+.+.+ .+++-++|+||++..+......+...+..-
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 011111100000 0 00 011123332 2233333 256679999999888777788877777655
Q ss_pred CCCcEEEEecCch-HHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 323 AQGSKIIVTTRNH-EVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 323 ~~gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
..++.+|++|... .+... ......+.+.+++.++..+++........ .+....+++.++|.|..+..+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 5566666666654 33322 23346789999999999999987643222 2223678999999998665553
No 80
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=1e-05 Score=100.28 Aligned_cols=200 Identities=20% Similarity=0.186 Sum_probs=115.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC---CcEEEEEeCCc---cCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF---DLKTWTCVSDD---FDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 261 (1450)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35899999999988877432 23579999999999999999998754332222 12334444321 12222
Q ss_pred HHHHH---------------HHHhhcCC-----------------CCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh
Q 037733 262 LTKAI---------------LTSIVAGQ-----------------NVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY 309 (1450)
Q Consensus 262 ~~~~i---------------~~~l~~~~-----------------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~ 309 (1450)
+...+ +...+... .....+ ...+..+.+.++++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 11111000 001111 2357788888889999999888887766
Q ss_pred hhHHhhhccccCCCCCcEEEE--ecCchHH-HHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhC
Q 037733 310 NYWVEFSRPFEAGAQGSKIIV--TTRNHEV-AEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCG 384 (1450)
Q Consensus 310 ~~~~~~~~~l~~~~~gs~ilv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~ 384 (1450)
..|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.+.++.+.+.... ...+++.+.|++.+.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI 386 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC
Confidence 778887766665555555555 6664321 1111 1224578899999999999987653211 112334444444444
Q ss_pred CChHHHHHHH
Q 037733 385 GLPLAAQTLG 394 (1450)
Q Consensus 385 G~PLai~~~~ 394 (1450)
.-+-|+..++
T Consensus 387 ~gRraln~L~ 396 (615)
T TIGR02903 387 EGRKAVNILA 396 (615)
T ss_pred cHHHHHHHHH
Confidence 3344444443
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=2.6e-05 Score=90.68 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=105.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe--CCccCHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV--SDDFDVIRLTKA 265 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 265 (1450)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++.. ....+. ..++.. +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998543 23457999999999999999998742 111221 122222 2211111 1111
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHHHh-cCC
Q 037733 266 ILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVAEI-MGT 343 (1450)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~ 343 (1450)
.+..+..... .-...+-++|+|+++.-....+..+...+......+++|+++... .+... ...
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001335689999997654445555555555444556777766432 22111 112
Q ss_pred CCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHH
Q 037733 344 VPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 344 ~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
...+++.++++++....+...+.... ...++.+..+++.++|.+--+.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 24588999999998888876653222 2346788889999999876543
No 82
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.9e-06 Score=71.24 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=14.3
Q ss_pred ccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccC
Q 037733 1258 LHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYC 1296 (1450)
Q Consensus 1258 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 1296 (1450)
|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333333333333333333333333333333333333333
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.9e-05 Score=91.98 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=112.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++...-...-. ...+........+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 458999999999988886542 134678999999999999999987421111000 000111111111111110
Q ss_pred HHh---hcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCchHHHHhc-
Q 037733 268 TSI---VAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII-VTTRNHEVAEIM- 341 (1450)
Q Consensus 268 ~~l---~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtr~~~v~~~~- 341 (1450)
..+ .........+..++.+.+.. ...++.-++|+|+++.-....++.+...+........+| .||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 00000011122222222222 124566799999998887788888877775544455544 455544443222
Q ss_pred CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHH
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai 390 (1450)
.....|.+.+++.++..+.+.+.+... ....++....|++.++|.+--+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHH
Confidence 233679999999999888887664322 1234677888999999987433
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.8e-06 Score=71.37 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=28.4
Q ss_pred CccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCC
Q 037733 1191 SLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCE 1249 (1450)
Q Consensus 1191 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 1249 (1450)
+|++|++++|++....+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333444445555555555555444444444555555555555543
No 85
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.19 E-value=2.1e-06 Score=92.85 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=63.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc--cCHHHHHHHHHHHhhcCCCCCCCCHH------HHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD--FDVIRLTKAILTSIVAGQNVDNHDLN------KLQ 285 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~------~~~ 285 (1450)
+...++|+|++|+|||||++.++++.... +|+..+|+.+.+. .++.++++++...+....... .... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHHHHH
Confidence 34688999999999999999999975444 8999999997776 789999999854443332211 1111 111
Q ss_pred HHHHH-HhCCCcEEEEEeCCCC
Q 037733 286 VELNK-QLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 286 ~~l~~-~l~~kr~LlVlDdv~~ 306 (1450)
..... .-.++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 11221 1358999999999943
No 86
>PRK08727 hypothetical protein; Validated
Probab=98.19 E-value=2.8e-05 Score=84.54 Aligned_cols=147 Identities=16% Similarity=0.081 Sum_probs=90.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.|+|..|+|||+||+++++. .......+.|+++.+ ....+. ..+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-hc
Confidence 45999999999999999999884 333333556665422 111111 1111 11 12
Q ss_pred cEEEEEeCCCCCC-hhhHHhhhccccC--CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHHHh
Q 037733 296 KFLLVLDDVWNEN-YNYWVEFSRPFEA--GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 296 r~LlVlDdv~~~~-~~~~~~~~~~l~~--~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 363 (1450)
.-+||+||+.... ...|....-.+.. ...|..||+|++.. ++.+++.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996432 1234322222221 13466799999852 3334444556889999999999999988
Q ss_pred ccCC-CCchhHHHHHHHHHHhCCChHHH
Q 037733 364 HSLG-PRELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 364 ~~~~-~~~~~~~~~~~i~~~~~G~PLai 390 (1450)
++.. .-...+++..-|++.++|-.-++
T Consensus 174 ~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 6642 22245678888899988766555
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.3e-05 Score=94.85 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=109.3
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------------------CCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH-------------------FDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 248 (1450)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-... |..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 469999999999999996542 2457889999999999999999873211110 1011
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCC
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK----QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQ 324 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 324 (1450)
+.+..... ...+.+.+.+.. -..+++-++|+|++...+......+...+.....
T Consensus 91 lEidaAs~----------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 91 LEIDAASN----------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred EEEecccc----------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 11111111 112222222211 1235667899999987665566666666654445
Q ss_pred CcEEEEecCch-HHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHH
Q 037733 325 GSKIIVTTRNH-EVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 325 gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
.+++|++|.+. .+... .+....+.+++++.++....+.+.+-... ....+....|++.++|.+.-+..
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 66677666543 22211 12235688899999999888876553222 23456788999999998854433
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.5e-05 Score=92.48 Aligned_cols=195 Identities=14% Similarity=0.189 Sum_probs=109.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++...- .-|.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCCC-CCcccHHHHHHH
Confidence 468999999999999885542 2357889999999999999999873211 1111100 001111111111
Q ss_pred HHhhcC----CCCCCCCHHHHH---HHHHHH-hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchHHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQ---VELNKQ-LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHEVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~v~ 338 (1450)
...... ........+++. ..+... ..+++-++|+|+++..+...+..+...+......+.+|+ |+....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 100000 000001122221 111110 123344699999987766777777776654444555554 44444443
Q ss_pred Hh-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChH-HHHHHH
Q 037733 339 EI-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPL-AAQTLG 394 (1450)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PL-ai~~~~ 394 (1450)
.. ......+++.++++++....+...+.... ....+.+..|++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 23346789999999999888776542211 2335678889999999664 444443
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=5.3e-05 Score=88.02 Aligned_cols=180 Identities=11% Similarity=0.077 Sum_probs=108.3
Q ss_pred ceecchhHHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHhccccccc------------------cCC
Q 037733 189 EVYGREIEKKQVIDLLLRDDLR----NDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD------------------HFD 246 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~ 246 (1450)
+++|-+..++.+..++..+... ...-...+.++|++|+||||+|+.++....-.. .+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999999764210 011356788999999999999999876211100 001
Q ss_pred cEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHH---HHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCC
Q 037733 247 LKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQV---ELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAG 322 (1450)
Q Consensus 247 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 322 (1450)
.+.++.... .....+++.. .... -..+++-++|+|+++..+......+...+...
T Consensus 86 D~~~i~~~~---------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DVRVVAPEG---------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CEEEecccc---------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111111100 0111222221 1111 11345568888999887766666676666554
Q ss_pred CCCcEEEEecCc-hHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 037733 323 AQGSKIIVTTRN-HEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 323 ~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
..+..+|++|.+ ..+...+ .....+.+.+++.++..+.+..... ...+.+..+++.++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 556666555544 4444322 2336799999999999988874321 12456788999999999765444
No 90
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.16 E-value=4.9e-05 Score=80.10 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCCch
Q 037733 294 GKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPREL 371 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1450)
+.+-++|+|+++......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456789999997766666777777776655566777766543 332222 22357899999999999988876 2 2
Q ss_pred hHHHHHHHHHHhCCChHH
Q 037733 372 LDEIGKKLVSKCGGLPLA 389 (1450)
Q Consensus 372 ~~~~~~~i~~~~~G~PLa 389 (1450)
.++.+..|++.++|.|..
T Consensus 170 ~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CHHHHHHHHHHcCCCccc
Confidence 357788999999998853
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3e-05 Score=94.61 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=112.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-...+. ..+...-...++|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 458999999999998886542 235578999999999999999987421111000 00000001111111
Q ss_pred HH-------hhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CchHHH
Q 037733 268 TS-------IVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-RNHEVA 338 (1450)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~ 338 (1450)
.. +........++..++.+.+.. -..+++-++|||+++..+...++.+...+.......++|++| ....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 000000011112222222211 124667799999998887777888877766555566655544 444443
Q ss_pred Hh-cCCCCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHH
Q 037733 339 EI-MGTVPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
.. ......|.+++++.++....+.+.+.. .....++....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 223467999999999999888765421 11233566788999999988644444
No 92
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=9e-06 Score=92.23 Aligned_cols=160 Identities=21% Similarity=0.364 Sum_probs=105.0
Q ss_pred ccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcc
Q 037733 1210 LHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLT 1289 (1450)
Q Consensus 1210 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 1289 (1450)
+..+.+++.|++++|.+. .+|. -.++|++|.+++|..+..+|..+. ++|+.|++++|..+..+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 345688999999999655 3452 234799999999888887776553 589999999986555555 4688
Q ss_pred eEeeccCCCc--ccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccC
Q 037733 1290 RLEISYCKRL--QALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFP 1367 (1450)
Q Consensus 1290 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 1367 (1450)
.|+++++... ..+| ++|+.|.+.++... ....+| ..+|++|++|++++|.
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~-----------~~~~lp-----------~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPE-----------NQARID-----------NLISPSLKTLSLTGCS 167 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccc-----------cccccc-----------cccCCcccEEEecCCC
Confidence 8888765542 2233 35777777544100 000111 1367899999999998
Q ss_pred CCccccccCCCCCCCCeeeccCCCCCC-CCCCCCCccccccccccCC
Q 037733 1368 NLERLSSSIVDLQNLTELIIEDCPKLK-YFPEKGLPSSLLRLRLERC 1413 (1450)
Q Consensus 1368 ~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~L~l~~n 1413 (1450)
... +|..+. .+|++|+++.|.... .++....++++ .|++.+|
T Consensus 168 ~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 168 NII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ccc-Cccccc--ccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 553 454444 689999998764222 33433455677 7888876
No 93
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.8e-05 Score=91.58 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=107.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-------------------CCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH-------------------FDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 248 (1450)
.++||.+.....+...+..+. -...+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 458999888888888775442 2356789999999999999999874211100 0011
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSK 327 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 327 (1450)
..+..+.......+ +++.. .... ...+++-++|+|+++.-.....+.+...+........
T Consensus 89 ~el~aa~~~gid~i-R~i~~------------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRD------------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCHHHH-HHHHH------------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 22222111111111 11111 1110 1234667999999976544555666666554334444
Q ss_pred EEE-ecCchHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCC-hHHHHHHHhh
Q 037733 328 IIV-TTRNHEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGL-PLAAQTLGGL 396 (1450)
Q Consensus 328 ilv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~-PLai~~~~~~ 396 (1450)
+|+ ||....+...+ .....+++.+++.++....+.+.+... ....++....|++.++|. +.|+..+..+
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444 44334443332 233678999999999888887765322 123466788899888654 6676666553
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=6.2e-05 Score=88.90 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=110.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc--------------------ccCCc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ--------------------DHFDL 247 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 247 (1450)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.++....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 458999999999999996542 24578899999999999999987632100 12222
Q ss_pred EEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 037733 248 KTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSK 327 (1450)
Q Consensus 248 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 327 (1450)
.++......... ..+++...+... -..+++-++|+|+++.-....+..+...+......+.
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~-----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA-----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC-----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222221111111 111222221100 0124556889999976655566667666654445666
Q ss_pred EEEecCchH-HHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHH
Q 037733 328 IIVTTRNHE-VAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 328 ilvTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
+|++|.+.. +...+ .....+++.++++++..+.+...+-... ...++.+..|++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 666665433 32222 2235688899999998888876543221 2335788889999999886655443
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.5e-05 Score=90.22 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-------------------cccCCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV-------------------QDHFDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~~~ 248 (1450)
.++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+++...- ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999998888888885542 2357889999999999999998762100 0111122
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKI 328 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 328 (1450)
+.+..+....+.+ .+++++.... .-..+++-++|+|++..-+....+.+...+......+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~-----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY-----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh-----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333332222222 1122222110 001345668999999877666777777777655566766
Q ss_pred EEec-CchHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHH
Q 037733 329 IVTT-RNHEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 329 lvTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 390 (1450)
|++| ..+.+...+ .....+++++++.++..+.+.+.+.... ...++.+..|++.++|.+-.+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 6555 444444322 3346789999999999888877653322 234667788999999977543
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.5e-05 Score=92.91 Aligned_cols=196 Identities=16% Similarity=0.159 Sum_probs=111.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC--CcEEEEEeCCccCHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF--DLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 265 (1450)
.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-.... ....+-.+ ..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHH
Confidence 458999988899999886543 24677899999999999999996532110000 00000000 00011111
Q ss_pred HHHHhhc----CCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CchH
Q 037733 266 ILTSIVA----GQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-RNHE 336 (1450)
Q Consensus 266 i~~~l~~----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~ 336 (1450)
|...-.. -........+++.+.+... ..++.-++|||+|+..+...++.+...+......+++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000000 0000111222222222111 12445589999999887778888877776555566666554 4344
Q ss_pred HHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHH
Q 037733 337 VAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 337 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
+... ......+++++++.++..+.+.+.+.... ....+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4322 23346799999999998888876543221 23456778899999997754443
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=5.7e-06 Score=92.60 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=67.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc--CHHHHHHHHHHHhhcCCCC
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF--DVIRLTKAILTSIVAGQNV 276 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 276 (1450)
++++.+..- ++.....|+|++|+||||||+++|++.... +|+..+||.+.+.. .+.++++++...+......
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455555432 345678899999999999999999965444 89999999998887 7888888887544333321
Q ss_pred CCCCHH--------HHHHHHHHHhCCCcEEEEEeCCC
Q 037733 277 DNHDLN--------KLQVELNKQLSGKKFLLVLDDVW 305 (1450)
Q Consensus 277 ~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv~ 305 (1450)
...... +.++.++ -.+++++|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLV--EHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHH--HcCCCEEEEEEChH
Confidence 111111 1111122 36899999999994
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.12 E-value=2.7e-05 Score=97.31 Aligned_cols=167 Identities=27% Similarity=0.282 Sum_probs=97.2
Q ss_pred cceecchhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKK---QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
.+++|.+..+. .+...+... ....+.++|++|+||||+|+.+++. ...+|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 45889887764 455555332 3456789999999999999999983 344441 111110 0000
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCch--HHH
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQL--SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV--TTRNH--EVA 338 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~--~v~ 338 (1450)
+..+........+ .+++.+|||||++.-....++.+...+. .|+.++| ||.+. .+.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111111111111 2467899999998765556666654432 3555555 34442 122
Q ss_pred Hh-cCCCCceeCCCCCHHHHHHHHHhccC------CC--CchhHHHHHHHHHHhCCChH
Q 037733 339 EI-MGTVPPHPLKELSDNDCLAIFAQHSL------GP--RELLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~------~~--~~~~~~~~~~i~~~~~G~PL 388 (1450)
.. ......+.+++++.++...++.+.+. +. ....++....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 12235789999999999999876543 11 12345677888888888643
No 99
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=5.3e-07 Score=107.99 Aligned_cols=217 Identities=24% Similarity=0.179 Sum_probs=128.1
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
.+|+.|++.+|.+...... +..+++|++|++++|.+... ..+..++.|+.|++++|.+... ..+..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcccc-hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 5777777777777654331 44577777777777777754 3455666677777777777643 23445777777777
Q ss_pred ccCCCccccc-ccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCC--CceEEEeCCCC
Q 037733 1246 SDCENLKILP-SGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTS--LQELRIIGDSP 1322 (1450)
Q Consensus 1246 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~ 1322 (1450)
++|.+...-+ . +..+.+|+.+++.+|.+... .....+..+..+++..|.+...-+ +..+.. |+.+++++|+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI 244 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence 7777654332 1 46667777777777766432 223333455555667676655322 222333 77777777731
Q ss_pred ccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCC---CCC-
Q 037733 1323 LCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKY---FPE- 1398 (1450)
Q Consensus 1323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~- 1398 (1450)
...+ ..+..+..+..|++.+|.+... ..+...+.+..+....|+.... ...
T Consensus 245 --------------~~~~---------~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 245 --------------SRSP---------EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred --------------cccc---------ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccc
Confidence 1111 1123445777777777764432 2245556666666776654422 111
Q ss_pred -CCCccccccccccCChhhH
Q 037733 1399 -KGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1399 -~~~~~~L~~L~l~~n~l~~ 1417 (1450)
....+++..+.+.+||+-.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccccccccCcccc
Confidence 2445677788888887643
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.4e-05 Score=92.11 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=108.5
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------cCCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD-------------------HFDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 248 (1450)
.++||-+..++.+..++..+.. ...+.++|+.|+||||+|+.+++..--.. .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4589999999999999965432 35678999999999999999987321111 11112
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKI 328 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 328 (1450)
+.+..+....+.++ +++++.+.. .-..++.-++|+|+|+.-+......+...+......+++
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22222211122111 122221110 011355668999999887777777777776655556776
Q ss_pred EEecC-chHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 329 IVTTR-NHEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 329 lvTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
|++|. ...+... ......+++++++.++....+...+-.. ....++....|++.++|.+--+.
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 65544 3333322 1223568899999998776654443211 12235567788999999875443
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=4.2e-05 Score=83.26 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=93.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.|+|++|+|||+||+++++.. ...-..+.++.+..... ...+..+.+ ..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW---------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh---------------------hhHHHHHHh----hh-
Confidence 578999999999999999999842 22223455665532100 001111111 11
Q ss_pred cEEEEEeCCCCCC-hhhHHhhh-ccccC-CCCC-cEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHHH
Q 037733 296 KFLLVLDDVWNEN-YNYWVEFS-RPFEA-GAQG-SKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIFA 362 (1450)
Q Consensus 296 r~LlVlDdv~~~~-~~~~~~~~-~~l~~-~~~g-s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1450)
--+|++||+.... ...|+... ..+.. ...| .++|+||+.. ++..++.....++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2378999996532 13454322 22211 1123 4799998753 445556667889999999999999887
Q ss_pred hccCCC-CchhHHHHHHHHHHhCCChHHHHHHHhh
Q 037733 363 QHSLGP-RELLDEIGKKLVSKCGGLPLAAQTLGGL 396 (1450)
Q Consensus 363 ~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~ 396 (1450)
+++... -...+++..-|++.+.|..-++..+-..
T Consensus 178 ~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 755322 2345778888999999876665544433
No 102
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=4.8e-07 Score=108.36 Aligned_cols=216 Identities=20% Similarity=0.145 Sum_probs=112.5
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
.++.+++..|.+.. +...+..+++|+.|++.+|.+.... ..+..+++|++|++++|.+.... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 44445555444443 1122344556666666666655432 11445566666666666655432 23444456666666
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcccc
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDD 1326 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1326 (1450)
+|.+... ..+..+++|+.+++++|.+...-+.....+.+|+.+++.+|.+... ..+..+..+..+++..|.
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~----- 219 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK----- 219 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc-----
Confidence 6654332 2344455566666666555433220023345555566665554432 123333333333444441
Q ss_pred ccccCCCCCcccCCCCCcccccCCCCCCCcc--cceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccc
Q 037733 1327 LQLAGCDDGMVSFPPEPQDIRLGNALPLPAS--LTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSS 1404 (1450)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 1404 (1450)
+. .+ .....+.. |+.+++++|++.. .+..+..++.+..|++.+|. ............
T Consensus 220 --i~-------~~----------~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~-~~~~~~~~~~~~ 278 (414)
T KOG0531|consen 220 --IS-------KL----------EGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNR-ISNLEGLERLPK 278 (414)
T ss_pred --ce-------ec----------cCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcc-ccccccccccch
Confidence 00 00 11112223 7889999987443 33567788888999999884 444444445667
Q ss_pred cccccccCChhh
Q 037733 1405 LLRLRLERCPLI 1416 (1450)
Q Consensus 1405 L~~L~l~~n~l~ 1416 (1450)
+..+....|++.
T Consensus 279 ~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 279 LSELWLNDNKLA 290 (414)
T ss_pred HHHhccCcchhc
Confidence 777888888764
No 103
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.7e-05 Score=84.97 Aligned_cols=198 Identities=16% Similarity=0.125 Sum_probs=124.1
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC--cEEEEEeCCccCHHHHHHHHH
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD--LKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
+.+|+++++++...|...-. +..+.-+.|+|.+|+|||+.++.+++. ++.... .+++|++....+..+++.+|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 88999999999998865432 222334889999999999999999984 333321 278999999999999999999
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCChhhHHhhhccccCCC-CCcEEE--EecCchHHHHhc-
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLS--GKKFLLVLDDVWNENYNYWVEFSRPFEAGA-QGSKII--VTTRNHEVAEIM- 341 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-~gs~il--vTtr~~~v~~~~- 341 (1450)
.++..... ......+....+.+.+. ++.+++|||+++.-....-+.+...+.... .+++|+ ..+-+......+
T Consensus 95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99973332 34455666666766664 588999999996532111122222222221 145543 344443332222
Q ss_pred -------CCCCceeCCCCCHHHHHHHHHhccC---CCCc---hhHHHHHHHHHHhCC-ChHHHHHH
Q 037733 342 -------GTVPPHPLKELSDNDCLAIFAQHSL---GPRE---LLDEIGKKLVSKCGG-LPLAAQTL 393 (1450)
Q Consensus 342 -------~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~---~~~~~~~~i~~~~~G-~PLai~~~ 393 (1450)
+. ..+...|-+.+|-...+..++- .+.. ..-+.+..++..-+| -=.||..+
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 22 2367889999999999877653 2221 333444445555554 33444433
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.06 E-value=4.5e-05 Score=83.28 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=88.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
...+.|+|..|+|||+||+.+++... +... ...+++..... .. + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~-------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F-------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H-------------------hhc-c
Confidence 45788999999999999999998421 1222 34444432211 00 0 011 2
Q ss_pred CcEEEEEeCCCCCChhhHHhhhccccC-CCCCc-EEEEecCchHHH--------HhcCCCCceeCCCCCHHHHHHHHHhc
Q 037733 295 KKFLLVLDDVWNENYNYWVEFSRPFEA-GAQGS-KIIVTTRNHEVA--------EIMGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs-~ilvTtr~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
..-+||+||+...+...-..+...+.. ...+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 234789999965432222233333322 12333 466776653321 23333467899999998877776653
Q ss_pred cCC-CCchhHHHHHHHHHHhCCChHHHHHHHhhh
Q 037733 365 SLG-PRELLDEIGKKLVSKCGGLPLAAQTLGGLL 397 (1450)
Q Consensus 365 ~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~~~L 397 (1450)
+.. .....++....+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 311 122346788888999999998887776554
No 105
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.9e-05 Score=90.22 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=108.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------cCCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD-------------------HFDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 248 (1450)
.++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 458999999999999986543 235678999999999999999986321110 11112
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCC
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQ 324 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 324 (1450)
+++..+.. ...+++...+... ..+++-++|+|+++.......+.+...+.....
T Consensus 91 ~ei~~~~~----------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAASN----------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeecccc----------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 22221111 1122222111111 135667999999987766667777777665555
Q ss_pred CcEEEEecCc-hHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChH-HHHHH
Q 037733 325 GSKIIVTTRN-HEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPL-AAQTL 393 (1450)
Q Consensus 325 gs~ilvTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PL-ai~~~ 393 (1450)
.+.+|++|.+ +.+... ......+++++++.++....+.+.+... ....++....|++.++|.+- |+..+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666655543 322211 1112568999999999887776544211 12345667889999999775 44433
No 106
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=1.5e-07 Score=109.07 Aligned_cols=127 Identities=22% Similarity=0.124 Sum_probs=73.9
Q ss_pred ccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCC
Q 037733 1263 QLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPE 1342 (1450)
Q Consensus 1263 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 1342 (1450)
.|...+.+.|.+. .+...+.-++.|+.|+|++|++...- .+..|+.|+.|||+.|. +..+|.-
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~--------------L~~vp~l 227 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC--------------LRHVPQL 227 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch--------------hcccccc
Confidence 4555555555443 22223333456666666666665532 45666666666666662 1222211
Q ss_pred CcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC---CCccccccccccCChhhHH
Q 037733 1343 PQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK---GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1343 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~l~~~ 1418 (1450)
-. .. -.|+.|.+++|...+ +- ++.++.+|+-||+++| .+....+. +.+.+|+.|+|.|||+-+.
T Consensus 228 ~~--------~g-c~L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 228 SM--------VG-CKLQLLNLRNNALTT-LR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ch--------hh-hhheeeeecccHHHh-hh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 00 01 137777777776433 22 4778888999999988 55544443 5667889999999998654
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=4.9e-05 Score=89.87 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=110.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEE-eCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTC-VSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 266 (1450)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-...++...|.. +..+...-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 458999999999988886542 234578999999999999999987321111111111110 00000000011111
Q ss_pred HHHhhcC----CCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CchH
Q 037733 267 LTSIVAG----QNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-RNHE 336 (1450)
Q Consensus 267 ~~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~ 336 (1450)
....... ........+++.+ +.+.+ .+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1000000 0001111233322 22222 3456688999998776667888877776555566665544 4444
Q ss_pred HHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHH
Q 037733 337 VAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 337 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
+...+ .....+++.++++++....+...+-... ...++.+..|++.++|.+--+.
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 43322 1225688999999998877766542221 2456788999999999875443
No 108
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=4.2e-05 Score=82.27 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=90.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~----------------------~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA----------------------AE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh----------------------hc
Confidence 35689999999999999999987421 1233321 1111111111 11
Q ss_pred CcEEEEEeCCCCC--ChhhHHhhhccccCCCCCcEEEEecCc---------hHHHHhcCCCCceeCCCCCHHHHHHHHHh
Q 037733 295 KKFLLVLDDVWNE--NYNYWVEFSRPFEAGAQGSKIIVTTRN---------HEVAEIMGTVPPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 295 kr~LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 363 (1450)
-+|++||+... +...+-.+...+. ..|..||+|++. +++..++.....++++++++++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999543 2222322322222 346679998873 34555566678899999999999999988
Q ss_pred ccCCC-CchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 364 HSLGP-RELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 364 ~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
++... -...+++..-|++.+.|..-++..+-
T Consensus 165 ~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 76432 22457888889999998887776543
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=7.9e-05 Score=91.17 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=112.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC--cEEEEEeCCccCHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD--LKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 265 (1450)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++......... ...+..+... .-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 469999999999999996543 245688999999999999999987421111100 0000000000 01111
Q ss_pred HHHHhhcC----CCCCCCCHHHHHHH---HHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchH
Q 037733 266 ILTSIVAG----QNVDNHDLNKLQVE---LNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHE 336 (1450)
Q Consensus 266 i~~~l~~~----~~~~~~~~~~~~~~---l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~ 336 (1450)
|...-... ........+++.+. ++. -..+++-++|+|++...+....+.+...+..-..++.+|+ ||....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11110000 00011122222222 111 1124556799999987766667777776665555666655 444444
Q ss_pred HHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHH
Q 037733 337 VAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 337 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
+...+ .....+++.+++.++....+.+.+.... ....+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43222 2336789999999999888877553222 234577888999999988655443
No 110
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.02 E-value=3e-05 Score=82.12 Aligned_cols=183 Identities=17% Similarity=0.182 Sum_probs=113.6
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEE-EEeCCccCHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTW-TCVSDDFDVIRLTKA 265 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~ 265 (1450)
-.+++|-+..+..+...+... .......+|++|.|||+-|.+++...--.+-|.+++- .++|..-... +.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 356899999999999888653 3578899999999999999998874322344544332 2333322211 1100
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHh--CCCc-EEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCchHHHHhc
Q 037733 266 ILTSIVAGQNVDNHDLNKLQVELNKQL--SGKK-FLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII-VTTRNHEVAEIM 341 (1450)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtr~~~v~~~~ 341 (1450)
...+...+.....+.. ..++ -.+|||+++....+.|..+...+......++.| ||+--..+...+
T Consensus 108 -----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 108 -----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred -----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 1111111111110000 1223 378899999988899999998887766777755 444333222211
Q ss_pred -CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCCh
Q 037733 342 -GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 342 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~P 387 (1450)
..-.-|..++|.+++...-+...+-... +...+..+.|++.++|--
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 1224588999999999888877664332 345678888999999853
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=2.2e-05 Score=92.08 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=99.6
Q ss_pred CcceecchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLR-------NDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV 259 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1450)
-.++.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 356899999999998887432110 1123456889999999999999999983 33333 22211
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hh---hHHhhhccccC--CC
Q 037733 260 IRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-----------YN---YWVEFSRPFEA--GA 323 (1450)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~~~~~l~~--~~ 323 (1450)
..+... ..+ .........+...-...+.+|++|+++... .. .+..+...+.. ..
T Consensus 190 ~~l~~~----~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRK----YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHH----hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111 100 011112222222223467899999986421 11 12222222221 13
Q ss_pred CCcEEEEecCchHHH-Hhc----CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 324 QGSKIIVTTRNHEVA-EIM----GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 324 ~gs~ilvTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
.+.+||.||...+.. ..+ .....+.+...+.++..++|..++....-........+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 467788888754321 111 1234688999999999999988764322111112456777777764
No 112
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.01 E-value=6e-05 Score=80.79 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=104.9
Q ss_pred cceecc-hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC--cEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGR-EIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD--LKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr-~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~ 264 (1450)
.-++|. .+..-.....+.... +.....+.|+|..|+|||.|.+++++. ...... .+++++ ..++..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~ 77 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIR 77 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHH
Confidence 335565 333344445554432 224456789999999999999999984 333222 345554 445666
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-hhHHhhh-ccccC-CCCCcEEEEecCch------
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-NYWVEFS-RPFEA-GAQGSKIIVTTRNH------ 335 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~~~-~~l~~-~~~gs~ilvTtr~~------ 335 (1450)
.+...+... ... .+++.++ .-=+|++||++.-.. ..|.... ..+.. ...|-+||+|++..
T Consensus 78 ~~~~~~~~~------~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRDG------EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHTT------SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHcc------cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 666666431 122 2334444 344789999966432 2333322 11111 13466899999652
Q ss_pred ---HHHHhcCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 336 ---EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 336 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
++..++...-.+++++.++++-.+++.+++... -...+++++-|++.+.+..-.+..+-
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 344555666779999999999999998876432 22456777888888877665554443
No 113
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=2.4e-05 Score=88.78 Aligned_cols=89 Identities=26% Similarity=0.453 Sum_probs=46.5
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
.++++|++++|.+ ..+|. + .++|++|.+++|..+..++. ..+++|++|++++|..+..+| ++|+.|+
T Consensus 52 ~~l~~L~Is~c~L-~sLP~-L--P~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDI-ESLPV-L--PNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP--------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCC-cccCC-C--CCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc--------cccceEE
Confidence 6677777777754 34441 1 23577777777666555542 124566777776664343333 2355555
Q ss_pred eeccCCcccccCCCCCCCccEEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIY 1142 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~ 1142 (1450)
+.++.... + ...|++|+.|.+.
T Consensus 119 L~~n~~~~-L--~~LPssLk~L~I~ 140 (426)
T PRK15386 119 IKGSATDS-I--KNVPNGLTSLSIN 140 (426)
T ss_pred eCCCCCcc-c--ccCcchHhheecc
Confidence 55433221 1 1234455555543
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=3.2e-06 Score=88.04 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCCcccceeeccccCCCcc-ccccCCCCCCCCeeeccCCCCCCC---CCCCCCccccccccccCChhhHH-hhhcCCCCC
Q 037733 1353 PLPASLTSLGISRFPNLER-LSSSIVDLQNLTELIIEDCPKLKY---FPEKGLPSSLLRLRLERCPLIGE-KCRKDGGRY 1427 (1450)
Q Consensus 1353 ~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~n~l~~~-~c~~~~~~~ 1427 (1450)
..++++..+-+..|++.+. -.+.+..+|.+..|+|+.|+ +.+ +.+...+++|..|.+++||+... +| .-..
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~---~err 271 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRG---GERR 271 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccC---Ccce
Confidence 3557888888888876553 33567788889999999885 443 44457789999999999999665 33 2234
Q ss_pred CCcccCcceeeccc
Q 037733 1428 RDLLTHIPYVWGFE 1441 (1450)
Q Consensus 1428 ~~~~~~~~~~~~~~ 1441 (1450)
...|+-++++..|+
T Consensus 272 ~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 272 FLLIARLTKVQVLN 285 (418)
T ss_pred EEEEeeccceEEec
Confidence 55677777776554
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00015 Score=87.58 Aligned_cols=198 Identities=13% Similarity=0.167 Sum_probs=112.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++..--....+. ...+.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 458899888888888885532 2357789999999999999999874311110000 0000001111111
Q ss_pred HHhhcC----CCCCCCCHHHHH---HHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQ---VELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 338 (1450)
...... ........+++. +.+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 100000 000001112111 11111 12356679999999877666777777766543345555555544 4443
Q ss_pred Hhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 037733 339 EIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLP-LAAQTLGGLL 397 (1450)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~P-Lai~~~~~~L 397 (1450)
..+ .....+++++++.++....+...+.... ....+.+..|++.++|.+ -|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 2235789999999999888876543222 244677888999999965 6777666544
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.97 E-value=0.00013 Score=79.34 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.|+|..|+|||.||+++++. ....-..++|++..+ +... .. .+.+.+++-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhhC
Confidence 57889999999999999999873 222223466666421 1111 01 122222222
Q ss_pred cEEEEEeCCCCCC-hhhHHh-hhccccC-CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHHHh
Q 037733 296 KFLLVLDDVWNEN-YNYWVE-FSRPFEA-GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 296 r~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 363 (1450)
. +||+||+.... ...|.. +...+.. ...|..||+|++.. ++..++.....++++++++++-.+++.+
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899996432 234443 3332221 23466789988753 2233344456789999999999999886
Q ss_pred ccCCC-CchhHHHHHHHHHHhCCChHHHHHHHhhh
Q 037733 364 HSLGP-RELLDEIGKKLVSKCGGLPLAAQTLGGLL 397 (1450)
Q Consensus 364 ~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~L 397 (1450)
++... -...+++..-|++.+.|..-++..+-..|
T Consensus 178 ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 55332 22446788889999988766655544333
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00019 Score=87.34 Aligned_cols=198 Identities=17% Similarity=0.108 Sum_probs=113.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....+ +-.+.. -...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~----C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGV----CESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccc----cHHHHHhh
Confidence 468999999999999996542 245678999999999999999987321111000 000000 00011110
Q ss_pred HH---------hhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchH
Q 037733 268 TS---------IVAGQNVDNHDLNKLQVELNKQ-LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHE 336 (1450)
Q Consensus 268 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~ 336 (1450)
.. +........++..++...+... ..+++-++|+|++..-+....+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000111111222222111 134566899999988777788888777766555666555 544444
Q ss_pred HHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChH-HHHHHHhhh
Q 037733 337 VAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPL-AAQTLGGLL 397 (1450)
Q Consensus 337 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PL-ai~~~~~~L 397 (1450)
+... ......+++.+++.++..+.+.+.+.... ....+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4432 23346799999999998887766543221 2335677888999999774 444444433
No 118
>PF14516 AAA_35: AAA-like domain
Probab=97.93 E-value=0.0012 Score=75.99 Aligned_cols=203 Identities=13% Similarity=0.118 Sum_probs=120.1
Q ss_pred CCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc-----cCHH
Q 037733 186 NKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD-----FDVI 260 (1450)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 260 (1450)
+.+..|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 3444678986667777777553 258999999999999999999874322 233 3456666542 2456
Q ss_pred HHHHHHHHHhhcCCCCC----------CCCHHHHHHHHHHHh---CCCcEEEEEeCCCCCCh------hhHHhhhccccC
Q 037733 261 RLTKAILTSIVAGQNVD----------NHDLNKLQVELNKQL---SGKKFLLVLDDVWNENY------NYWVEFSRPFEA 321 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~------~~~~~~~~~l~~ 321 (1450)
++++.++..+...-... ..........+.+.+ .+++.+|++|+|+..-. +-+..++.....
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 66666665554432211 112223333344332 36899999999965321 112222221111
Q ss_pred CC----CCc-E-EEEecCchHHHHh-----cCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHH
Q 037733 322 GA----QGS-K-IIVTTRNHEVAEI-----MGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 322 ~~----~gs-~-ilvTtr~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai 390 (1450)
.. -.. + |++.+........ +.....++|.+++.+|...|..++...-. .+..++|...++|+|.-+
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC---HHHHHHHHHHHCCCHHHH
Confidence 11 011 1 2222211111111 11224689999999999999988753322 334899999999999999
Q ss_pred HHHHhhhcCC
Q 037733 391 QTLGGLLRGK 400 (1450)
Q Consensus 391 ~~~~~~L~~~ 400 (1450)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999998764
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00018 Score=85.83 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=102.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
..-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHhc-
Confidence 34588999999999999999998321111112234443 3456666666654311 11223444443
Q ss_pred CcEEEEEeCCCCCCh-hhH-HhhhccccC-CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHHH
Q 037733 295 KKFLLVLDDVWNENY-NYW-VEFSRPFEA-GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIFA 362 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1450)
+.-+||+||+..... ..| +.+...+.. ...|..||+|+... .+..++...-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 344888999965431 122 223222221 13455788887642 333445555678899999999999998
Q ss_pred hccCCCC---chhHHHHHHHHHHhCCChHHHHHHHhh
Q 037733 363 QHSLGPR---ELLDEIGKKLVSKCGGLPLAAQTLGGL 396 (1450)
Q Consensus 363 ~~~~~~~---~~~~~~~~~i~~~~~G~PLai~~~~~~ 396 (1450)
+++-... ...+++..-|++.++|.|-.+.-+...
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8764321 345788899999999999877665533
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00026 Score=86.98 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=108.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe-------CCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV-------SDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------~~~~~~~ 260 (1450)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--....+ .+-.+ ...++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 458999999999999996543 245678999999999999999986321100000 00000 0000000
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCchHHH
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQ-LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII-VTTRNHEVA 338 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtr~~~v~ 338 (1450)
.+.+.......+..++.+.+... ..+++-++|+|++.......+..+...+......+.+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000000011122222222211 23566689999998777677887777665444455544 555555554
Q ss_pred Hh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 339 EI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
.. ......+++.+++.++....+...+... .....+.+..|++.++|.+--+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 32 2334689999999999888876643221 12335668889999999764333
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=8.5e-06 Score=61.14 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=24.3
Q ss_pred cccEEEecCCCCCcCCcCccCCCccceeeccCCCccccc
Q 037733 597 RLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLP 635 (1450)
Q Consensus 597 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP 635 (1450)
+|++|++++|+|+.+|..|++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666666666666666666666666553
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00026 Score=83.53 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=104.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc------ccCCcEE-EEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ------DHFDLKT-WTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~-wv~~~~~~~~~ 260 (1450)
.+++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.+++...-. ..|...+ -+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 458999999999999996542 24688899999999999999998732110 1121111 11111111111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CchHHHH
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-RNHEVAE 339 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~~ 339 (1450)
..+++++.+... -..+++-++|+|++.......+..+...+......+.+|++| ....+..
T Consensus 92 -~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 -DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111111111100 112455689999997665556666655554433445555544 3333322
Q ss_pred h-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHH
Q 037733 340 I-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 340 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 390 (1450)
. ......++++++++++....+...+.... ...++.+..|++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 1 22235689999999998888876553222 234678888999999866533
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00021 Score=90.65 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=109.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....... .+... .-.+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 458999999999999996542 23567899999999999999998743111110000 00000 0000000
Q ss_pred HH---------hhcCCCCCCCCHHHHHH---HHH-HHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-C
Q 037733 268 TS---------IVAGQNVDNHDLNKLQV---ELN-KQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-R 333 (1450)
Q Consensus 268 ~~---------l~~~~~~~~~~~~~~~~---~l~-~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r 333 (1450)
.. +... .....+++.+ .+. .-..+++-++|||+++..+...++.++..+..-...+.+|++| .
T Consensus 83 ~g~~~~~dv~eidaa---s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 83 PGGPGSLDVTEIDAA---SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred cCCCCCCcEEEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00 0000 0111222222 111 1123556688999998888788888887777655566666544 4
Q ss_pred chHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHH
Q 037733 334 NHEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 334 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai 390 (1450)
...+...+ .....|++..++.++..+.+.+.+-.. .....+....|++.++|.+..+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 44444322 334678999999999887776643211 1234566788899999988433
No 124
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=7.9e-07 Score=92.50 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=88.6
Q ss_pred ccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC---CCCCCCCccEEEEccCCCCCCCccccccCCCCC
Q 037733 1036 LSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP---EVALPSKLREIRIDGCDALKSLPEAWMCDNNSS 1112 (1450)
Q Consensus 1036 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~ 1112 (1450)
.+.+|+.|.+.++.+.+.+...+..-.+|+.|+++.|.-.+... .+..|+.|..|+++-|............+--++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 34556666666666666555566666777777777776554443 345677777777777765554433333344567
Q ss_pred ccEEEeeccCCccccc----CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchh-hhhhhcC
Q 037733 1113 LEILCVLHCQLLTYIA----GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLE-SVAERLD 1187 (1450)
Q Consensus 1113 L~~L~l~~n~~~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~ 1187 (1450)
|+.|+++++...-... -...+| +|.+|||++|..+. .....+-
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp--------------------------------~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCP--------------------------------NLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCC--------------------------------ceeeeccccccccCchHHHHHH
Confidence 7788887775331111 112233 44444444444332 2222344
Q ss_pred CCCCccEEEeecccCccccCc---cccCCCCCcEEEEccCCCc
Q 037733 1188 NNTSLERIRIYFCENLKNLPS---GLHNLRQLREIRISLCSKL 1227 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~~~ 1227 (1450)
.++.|++|.++.|... +|. .+...|+|.+|++.+|-..
T Consensus 336 kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 5666777777766643 222 2455677777777776544
No 125
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00033 Score=87.04 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=111.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++......... .....+.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988886542 235678999999999999999987321110000 000011111222222
Q ss_pred HHhhcC----CCCCCCCHHHHHHHH---HHH-hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQVEL---NKQ-LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l---~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 338 (1450)
...... ........+++.+.+ ... ..+++-++|+|+++.-.....+.+...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111100 000111222222211 110 1245678999999776656677776666554455666655543 3333
Q ss_pred Hhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHH
Q 037733 339 EIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
..+ .....+++++++.++....+...+.... ....+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2235688999999998887776543222 234677889999999988655443
No 126
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.86 E-value=5.3e-05 Score=85.63 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc--cCHHHHHHHHHHHhhcCCCCCCCCHH-HHHH----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD--FDVIRLTKAILTSIVAGQNVDNHDLN-KLQV---- 286 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~---- 286 (1450)
....++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+............ .+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4568999999999999999999986433 37999999999866 68999999987655444332211111 1111
Q ss_pred HHHH-HhCCCcEEEEEeCCCC
Q 037733 287 ELNK-QLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 287 ~l~~-~l~~kr~LlVlDdv~~ 306 (1450)
.... .-++++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 1111 1368999999999943
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00034 Score=83.71 Aligned_cols=179 Identities=14% Similarity=0.105 Sum_probs=110.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc--ccc----------------CC-cE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV--QDH----------------FD-LK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------f~-~~ 248 (1450)
.++||-+..++.+...+..+. -..+..++|+.|+||||+|+.+++..-- ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 458999999999999885542 2456789999999999999988763210 000 00 01
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCC
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQ 324 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 324 (1450)
+.+..... ...+++.+.+... ..+++-++|+|+++....+....+...+.....
T Consensus 89 ~eldaas~----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMDAASN----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEeccccc----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 11111111 1122222222210 124566899999988777777777777765556
Q ss_pred CcEEEEecCch-HHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHHH
Q 037733 325 GSKIIVTTRNH-EVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 325 gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
.+++|++|.+. .+... ......+++.+++.++....+...+... ....++.+..|++.++|.+--+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 67766666553 22211 1223678999999999888876544221 1234677889999999988555444
No 128
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.84 E-value=0.00026 Score=76.89 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
+.++++.++|..+ ...+..-+.|||.+|.|||++++++....-... .--.++.|.....++..+++..|+.++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3455566666443 456677899999999999999999986421110 011467778888899999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCC------hhhHHhhhccccCCCCCcEEEEecCch--------
Q 037733 271 VAGQNVDNHDLNKLQVELNKQLSG-KKFLLVLDDVWNEN------YNYWVEFSRPFEAGAQGSKIIVTTRNH-------- 335 (1450)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~------~~~~~~~~~~l~~~~~gs~ilvTtr~~-------- 335 (1450)
+.+.. ...............++. +--+||+|.+.+.- +...-.....+.+.-.=+-|.|-|+.-
T Consensus 121 gaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 121 GAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 98765 334444544444455543 34589999996621 111222222332223334455655542
Q ss_pred HHHHhcCCCCceeCCCCCHH-HHHHHHHhccC----C-CCc-hhHHHHHHHHHHhCCChHHH
Q 037733 336 EVAEIMGTVPPHPLKELSDN-DCLAIFAQHSL----G-PRE-LLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 336 ~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~----~-~~~-~~~~~~~~i~~~~~G~PLai 390 (1450)
+.+.. ..++.+.....+ |...|+..... . +.. ...++++.|.+.++|+.=-+
T Consensus 200 QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 200 QLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 22222 245666665544 44455543221 1 111 45789999999999976333
No 129
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=3.6e-07 Score=105.96 Aligned_cols=201 Identities=18% Similarity=0.145 Sum_probs=102.8
Q ss_pred hhhccCCccEEEeecCCCcccc-CcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCC----------CCCC
Q 037733 1033 LCELSCRLEYLGLSHCEGLVKL-PQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDA----------LKSL 1101 (1450)
Q Consensus 1033 l~~~~~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~----------~~~~ 1101 (1450)
+..+.++++.|.+-.-...+-. |-.+..+.+|+.|.+.+|++.....-...-.+|++|.-+ |.. ...+
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDI 157 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccc
Confidence 3444566666666554443322 556677888999999988876533211111233333211 110 0111
Q ss_pred ccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhh
Q 037733 1102 PEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLES 1181 (1450)
Q Consensus 1102 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ 1181 (1450)
...+ -...|...+.++|.+......+..++.|+.|+++++ ++.... .+..+ +.|++|||++|.+...
T Consensus 158 ~ns~---~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~---~Lr~l------~~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 158 SNSP---VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD---NLRRL------PKLKHLDLSYNCLRHV 224 (1096)
T ss_pred ccch---hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH---HHHhc------ccccccccccchhccc
Confidence 1111 123455556666665544445555666666666653 222211 22222 4666666666666544
Q ss_pred hhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccch-hcccCCCCCCCceecccCCC
Q 037733 1182 VAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESI-AERLDNNTSLEKIDTSDCEN 1250 (1450)
Q Consensus 1182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~ 1250 (1450)
......+|. |..|++++|.+.+. .++.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|++
T Consensus 225 p~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 225 PQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 333333444 66677766666543 34566667777777766655321 11233445666666777664
No 130
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=3.1e-06 Score=88.16 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=41.2
Q ss_pred cccEEEeecCCCccccC---CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCC-CCCCccE
Q 037733 1063 SLRKIEIRNCSSLVSFP---EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQ-LPPSLKR 1138 (1450)
Q Consensus 1063 ~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~ 1138 (1450)
-++-|.+.+|.+-..-. .-..++.++.+++.+|.+..-.....++.++|.|+.|+++.|++...+.... ...+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455555554432111 1123566777777777643221111223577777777777777665444331 2345555
Q ss_pred EEEeC
Q 037733 1139 LDIYG 1143 (1450)
Q Consensus 1139 L~l~~ 1143 (1450)
|-+.+
T Consensus 126 lVLNg 130 (418)
T KOG2982|consen 126 LVLNG 130 (418)
T ss_pred EEEcC
Confidence 55544
No 131
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=7.7e-05 Score=85.91 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=76.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++++.++..+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.+.+.++..++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45788999999999999653 467889999999999999999854444577889999999888866655322
Q ss_pred HHhhcCCCCCCC-CHHHHHHHHHHHh--CCCcEEEEEeCCCCCChhh-HHhhhc
Q 037733 268 TSIVAGQNVDNH-DLNKLQVELNKQL--SGKKFLLVLDDVWNENYNY-WVEFSR 317 (1450)
Q Consensus 268 ~~l~~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~~~~ 317 (1450)
..... ... ...-..+.+.... .++++++|+|++...+... +..+..
T Consensus 246 ---rP~~v-gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~ 295 (459)
T PRK11331 246 ---RPNGV-GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMM 295 (459)
T ss_pred ---CCCCC-CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhh
Confidence 11100 000 0011112222222 2468999999998765433 444433
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00032 Score=83.75 Aligned_cols=181 Identities=16% Similarity=0.150 Sum_probs=107.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc---------------------ccCC
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ---------------------DHFD 246 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 246 (1450)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999986542 23667899999999999999997632110 0111
Q ss_pred cEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCC
Q 037733 247 LKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQG 325 (1450)
Q Consensus 247 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~g 325 (1450)
..++......... +..++.+.+.. ...+++-++|+|+++.......+.+...+.....+
T Consensus 92 -~~~i~g~~~~gid-------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHRGIE-------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccCCHH-------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1111111111111 11111111111 12356678999999766555566666666554456
Q ss_pred cEEEEecC-chHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChH-HHHHH
Q 037733 326 SKIIVTTR-NHEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPL-AAQTL 393 (1450)
Q Consensus 326 s~ilvTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PL-ai~~~ 393 (1450)
+.+|++|. ...+... ......++++++++++....+...+-.. ....++.+..|++.++|.+- |+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666553 3333222 1233578999999999888777654221 12346778889999999764 44433
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.00025 Score=82.04 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=84.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++. .... ...++.+. .... ..++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHH-HHHHHH
Confidence 568999999999999986432 3467788999999999999999873 2211 23334333 1111 111111
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCchH-HHHh-cCCC
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAGAQGSKIIVTTRNHE-VAEI-MGTV 344 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~-~~~~ 344 (1450)
....... ...+.+-++|+||++.. .......+...+.....++++|+||.... +... ....
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01234568899999765 22233334333444456778888886532 1111 1122
Q ss_pred CceeCCCCCHHHHHHHHHh
Q 037733 345 PPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~ 363 (1450)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4567777777777666543
No 134
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00066 Score=81.59 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=107.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc--cc-----------------cCCcE
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV--QD-----------------HFDLK 248 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~f~~~ 248 (1450)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 458899999999999996542 2356678999999999999998863210 00 01111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSK 327 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 327 (1450)
.++..+..... .+...+.+.+.. -..+++-++|+|+++.-.....+.+...+........
T Consensus 91 ~eidaas~~gv-------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNRGI-------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCCCH-------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11211111000 111112111111 1135667999999987665666777666655444555
Q ss_pred EEE-ecCchHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 328 IIV-TTRNHEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 328 ilv-Ttr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
+|+ ||+...+... ......+.+.+++.++....+...+-.. .....+.+..|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4444443322 2233578999999999887777654221 12345677888999999776554443
No 135
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.80 E-value=8.9e-05 Score=87.19 Aligned_cols=178 Identities=15% Similarity=0.094 Sum_probs=95.9
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|+++.++++.+.+...-. -+-...+-|.++|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 4688999999999887632110 01133566889999999999999999983 3322 232221 1
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-----------ChhhHHhhhccc---cC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE-----------NYNYWVEFSRPF---EA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~~~l---~~--~~~ 324 (1450)
++. ....+ .....+...+...-...+.+|+|||++.- +...+..+...+ .. ...
T Consensus 200 ~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 ELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 111 11110 11112222222222456789999999642 011111222211 11 123
Q ss_pred CcEEEEecCchHHH-Hhc---C-CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC
Q 037733 325 GSKIIVTTRNHEVA-EIM---G-TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~ 386 (1450)
+..||.||...+.. ..+ + -...+++.+.+.++-.++|..+.....-........+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCC
Confidence 56777777654322 111 1 23468899999999999998775432111111245566666664
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00052 Score=84.84 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=110.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--.. .+.... .....-+..+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPTP----EPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCCC----CCCcccHHHHHHh
Confidence 458899999999999986542 134678999999999999999987421110 000000 0011111122221
Q ss_pred HHhhcC----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchHHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHEVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~v~ 338 (1450)
...... ........+.+.+.+... ..+++-++|+|+++......+..+...+......+.+|+ |+....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111100 000111222332222211 124556899999987766777777777665444555554 44433333
Q ss_pred Hhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHH
Q 037733 339 EIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
..+ .....+++.+++.++....+...+.... ....+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2335688889999888877765443211 223567889999999988655443
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00028 Score=86.51 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=108.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEE-eCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTC-VSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 266 (1450)
.++||-+..+..+..++..+. -...+.++|+.|+||||+|+.+++...-....+...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 458999999999988885542 235688999999999999999887421111111001110 00000000011111
Q ss_pred HHHhhcC----CCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCchHH
Q 037733 267 LTSIVAG----QNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII-VTTRNHEV 337 (1450)
Q Consensus 267 ~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtr~~~v 337 (1450)
...-... ........+++...+... ..+++-++|+|+++.......+.+...+..-...+.+| +|++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000 000111123333222111 23455678999998776666777777766544455554 45454444
Q ss_pred HHh-cCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChH
Q 037733 338 AEI-MGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PL 388 (1450)
... ......+++.+++.++....+.+.+... .....+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 432 2344679999999999887776544221 12446788899999999654
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.79 E-value=0.00048 Score=73.45 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=82.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~---------------------~-~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFF---------------------N-E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhh---------------------c-h-------hHHh-c
Confidence 568999999999999999988742 11 1111 0000 0 0 0011 2
Q ss_pred cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-------HHHHhcCCCCceeCCCCCHHHHHHHHHhccCC-
Q 037733 296 KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-------EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLG- 367 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~- 367 (1450)
.-++++||++.-.....-.+...+. ..|..||+|++.. +...++...-.++++++++++-..++.+.+..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899996432111112211122 3466899998753 23444555668999999999988888776532
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHH
Q 037733 368 PRELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 368 ~~~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
.-...+++..-|++.+.|.--.+.-
T Consensus 164 ~l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 164 SVTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CCCCCHHHHHHHHHHccCCHHHHHH
Confidence 2224477888888888876544433
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00056 Score=84.59 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=109.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---------------------cccCC
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV---------------------QDHFD 246 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~ 246 (1450)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.++....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 458999999999999996542 2456889999999999999998763210 11232
Q ss_pred cEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCC
Q 037733 247 LKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAG 322 (1450)
Q Consensus 247 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~ 322 (1450)
. ..+....... .+++...+... ..+++-++|+|++..-+...++.+...+..-
T Consensus 92 ~-~~ld~~~~~~----------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 I-HELDAASNNS----------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred e-EEecccccCC----------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1 1122211111 22222222111 1244558899999887767788887777655
Q ss_pred CCCcEEEE-ecCchHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHH
Q 037733 323 AQGSKIIV-TTRNHEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 323 ~~gs~ilv-Ttr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai 390 (1450)
..++.+|+ ||+...+...+ .....++++++++++....+.+.+... .....+.+..|++.++|..--+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55666555 54544444332 334679999999999988887644221 1233567888999999976544
No 140
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00074 Score=76.04 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=117.7
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
+..++||+.|++.+.+|+...- .....+-+-|.|-+|.|||.+...++.+..-...=..++++++..-.....++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 4568999999999999997643 33456788999999999999999999854222111245677766556677888888
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHHhhhccccC-CCCCcEEEEecCch--HHH---
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGK--KFLLVLDDVWNENYNYWVEFSRPFEA-GAQGSKIIVTTRNH--EVA--- 338 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilvTtr~~--~v~--- 338 (1450)
...+.......... .+....+.++.... .+|+|+|..+.-....-..+...|.+ .-+++|+|+.--.. +..
T Consensus 227 ~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88874332212222 44455555555433 58999999854211111222223322 23566665533211 111
Q ss_pred -Hhc-----CCCCceeCCCCCHHHHHHHHHhccCCCCc--hhHHHHHHHHHHhCC
Q 037733 339 -EIM-----GTVPPHPLKELSDNDCLAIFAQHSLGPRE--LLDEIGKKLVSKCGG 385 (1450)
Q Consensus 339 -~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~i~~~~~G 385 (1450)
..+ .....+...|.+.++-.++|..+...... .....++-+++||.|
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 111 12356788999999999999887643221 222344444555544
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0012 Score=80.71 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=110.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--..... ...+....+- +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHH
Confidence 468999999999999996543 245788999999999999999987421111000 0000000000 1110
Q ss_pred HHhhcC----CCCCCCCHHHHHHHH---HH-HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecC-chHHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQVEL---NK-QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTR-NHEVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr-~~~v~ 338 (1450)
..-... ........+++.+.. .. -..+++-++|+|++..-+...++.+...+......+.+|++|. ...+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 000000 000011222222211 11 1235666899999988776777787777765455666665554 34443
Q ss_pred Hhc-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHH
Q 037733 339 EIM-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
..+ .....+++.+++.++....+...+.... ...++.+..|++.++|.+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 2335689999999998888776553221 23467778889999997754433
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.65 E-value=0.00086 Score=80.15 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=92.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccC--CcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHF--DLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
...+.|+|+.|+|||+||+++++. ..... ..++++++ .++..++...+... ..+.. .+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~----~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEF----KEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHH----HHHH
Confidence 456889999999999999999984 33322 23455543 33444555554321 22222 2333
Q ss_pred CCCcEEEEEeCCCCCChh-hH-HhhhccccC-CCCCcEEEEecCch-H--------HHHhcCCCCceeCCCCCHHHHHHH
Q 037733 293 SGKKFLLVLDDVWNENYN-YW-VEFSRPFEA-GAQGSKIIVTTRNH-E--------VAEIMGTVPPHPLKELSDNDCLAI 360 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~ilvTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l 360 (1450)
++ .-+|||||++..... .+ +.+...+.. ...|..||+|+... . +..++.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 348899999753211 11 222222211 12355688877642 1 222333335689999999999999
Q ss_pred HHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 361 FAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 361 f~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
+.+.+... ....+++...|++.+.|.+-.+.
T Consensus 277 l~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 98876432 22456788888898888776544
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=3.5e-05 Score=57.84 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=31.3
Q ss_pred CccceeeccCCCcccccccccccCCccEEecCCCCchhHh
Q 037733 619 RYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKL 658 (1450)
Q Consensus 619 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~l 658 (1450)
++||+|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4789999999999999988999999999999985 45443
No 144
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.61 E-value=0.00048 Score=76.71 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=79.8
Q ss_pred ceecchhHHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH
Q 037733 189 EVYGREIEKKQVIDLLLR---------DDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV 259 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1450)
.++|.+..+++|.+.... ......+...-+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478988777666543311 1111223456678999999999999999987321001111112333321
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hhhHHhhhccccCCCCCcEEEEe
Q 037733 260 IRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN--------YNYWVEFSRPFEAGAQGSKIIVT 331 (1450)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~ilvT 331 (1450)
.++. ....+ .........+.+. . .-+|++|+++.-. .+..+.+...+........+|++
T Consensus 83 ~~l~----~~~~g------~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 ADLV----GEYIG------HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred HHhh----hhhcc------chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 1111 11110 1112222223222 1 2488999996521 12233444444433333455566
Q ss_pred cCchHHHH------hc-CC-CCceeCCCCCHHHHHHHHHhcc
Q 037733 332 TRNHEVAE------IM-GT-VPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 332 tr~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
+...+... .+ .. ...+++++++.+|-.+++.+.+
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 54433211 01 11 2347888999998888887655
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.00041 Score=88.97 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=84.3
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---ccccC-CcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR---VQDHF-DLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 263 (1450)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh
Confidence 469999999999999996542 22356999999999999999998421 11111 3344421 111111
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCC---------hhhHHhhhccccCCCCCcEEEEecC
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQL-SGKKFLLVLDDVWNEN---------YNYWVEFSRPFEAGAQGSKIIVTTR 333 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilvTtr 333 (1450)
. ... ...+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+...+. . ..-++|-+|.
T Consensus 251 ----a----~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~-g~i~~IgaTt 319 (731)
T TIGR02639 251 ----A----GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-S-GKLRCIGSTT 319 (731)
T ss_pred ----h----hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-C-CCeEEEEecC
Confidence 0 000 1112222222222222 3468899999996321 111122322222 1 1234555544
Q ss_pred chHHHH------h-cCCCCceeCCCCCHHHHHHHHHhc
Q 037733 334 NHEVAE------I-MGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 334 ~~~v~~------~-~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
..+... . ......+++++++.++..+++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 322211 1 112357899999999999998754
No 146
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.0013 Score=69.37 Aligned_cols=177 Identities=20% Similarity=0.155 Sum_probs=99.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+|||-++-++++.-++..... .+..+--+.++|++|.||||||.-+++...+ .+ -++.+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--Ce----EecccccccChhhHHHHH
Confidence 5699999999998877765543 5566788999999999999999999984322 21 111111111111111222
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhcc--------ccCCCCCcE-----------E
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRP--------FEAGAQGSK-----------I 328 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~--------l~~~~~gs~-----------i 328 (1450)
..+ +. .=++.+|.+..-....-+-+..+ ....++++| |
T Consensus 99 t~L----------------------e~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 99 TNL----------------------EE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hcC----------------------Cc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 222 11 22344555544321111111111 111223333 3
Q ss_pred EEecCchHHHHhcC--CCCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 329 IVTTRNHEVAEIMG--TVPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 329 lvTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
=-|||.-.+...+. -.-+.+++--+.+|-.++..+.+.. ..+..++.+.+|++...|-|--..-+-
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHH
Confidence 35888754433221 1134678888999999888877632 223456789999999999996444333
No 147
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0016 Score=74.17 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=66.9
Q ss_pred CCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCCch
Q 037733 294 GKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPREL 371 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1450)
+++-++|+|+++..+......+...+..-..++.+|+||.+. .+... ......+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---~ 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---S 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc---C
Confidence 344455779998888788888877776555667777777664 33322 233467899999999999888765311 1
Q ss_pred hHHHHHHHHHHhCCChHHHHHH
Q 037733 372 LDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 372 ~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
..+.+..++..++|.|..+..+
T Consensus 182 ~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ChHHHHHHHHHcCCCHHHHHHH
Confidence 2445667789999999766544
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.59 E-value=0.0037 Score=68.75 Aligned_cols=171 Identities=20% Similarity=0.203 Sum_probs=105.3
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
++.+.+|+.++..+..++...+ ..-+..|.|.|-.|.|||.+.+++++.. . -..+|+++-+.++.+.+...|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 4568899999999999886542 2345667999999999999999999854 2 236899999999999999999
Q ss_pred HHHhh-cCCCCCCC-----CHHHHHHHHHH--Hh--CCCcEEEEEeCCCCCC---hhhHHhhhccccCCCCCcEEEEecC
Q 037733 267 LTSIV-AGQNVDNH-----DLNKLQVELNK--QL--SGKKFLLVLDDVWNEN---YNYWVEFSRPFEAGAQGSKIIVTTR 333 (1450)
Q Consensus 267 ~~~l~-~~~~~~~~-----~~~~~~~~l~~--~l--~~kr~LlVlDdv~~~~---~~~~~~~~~~l~~~~~gs~ilvTtr 333 (1450)
+.+.. ...+.... ........+.+ .. +++.++||||+++.-. ..-...+.+...-.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 99985 22221111 11222222222 12 2468999999996531 0111111111001112233444443
Q ss_pred ch---HHHHhcCCCC--ceeCCCCCHHHHHHHHHhcc
Q 037733 334 NH---EVAEIMGTVP--PHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 334 ~~---~v~~~~~~~~--~~~l~~L~~~~~~~lf~~~~ 365 (1450)
.. .....+|+.. ++....-+.+|..+++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 32 2222245443 45678889999999997643
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0012 Score=81.70 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=107.5
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--....+. .+.+.-...++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999886542 2356789999999999999999873211110000 0000000000000
Q ss_pred HH-------hhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchHHH
Q 037733 268 TS-------IVAGQNVDNHDLNKLQVELNKQ-LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHEVA 338 (1450)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~v~ 338 (1450)
.. +.+.......+..++...+... ..+++-++|+|+++.-+....+.+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000001111222211111 134556899999987766677777776655445666554 55555454
Q ss_pred Hhc-CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCCh-HHHHHH
Q 037733 339 EIM-GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLP-LAAQTL 393 (1450)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~P-Lai~~~ 393 (1450)
..+ .....+++++++.++....+...+... .....+.+..|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 233678899999998887776543221 1234567788899999865 444444
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.59 E-value=0.00048 Score=88.73 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=95.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc------CCcEEE-EEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH------FDLKTW-TCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~ 260 (1450)
.++|||+.+++++++.|.... ..-+.++|++|+||||+|+.+++. +... .+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 469999999999999996642 234569999999999999999983 2211 123333 22211
Q ss_pred HHHHHHHHHhhcCCCCCCCCH-HHHHHHHHHHh-CCCcEEEEEeCCCCCC-------hhhHHhhhccccCCCCCcEEEEe
Q 037733 261 RLTKAILTSIVAGQNVDNHDL-NKLQVELNKQL-SGKKFLLVLDDVWNEN-------YNYWVEFSRPFEAGAQGSKIIVT 331 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvT 331 (1450)
+..... ...+. ..+...+.+.- .+++.+|++|++..-. ..+-..+..+.... ..-++|-|
T Consensus 254 ---------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAA 322 (852)
T ss_pred ---------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEe
Confidence 000000 01111 12222222221 2468999999985421 11111122222221 23456666
Q ss_pred cCchHHHHh-------cCCCCceeCCCCCHHHHHHHHHhccCC-----CCchhHHHHHHHHHHhCCC
Q 037733 332 TRNHEVAEI-------MGTVPPHPLKELSDNDCLAIFAQHSLG-----PRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 332 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~~~~~i~~~~~G~ 386 (1450)
|...+.... ......+.+++++.+++.+++....-. .....++....+++.+.+.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 654332111 123367999999999999997443211 1112355666677766654
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0018 Score=73.24 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=112.8
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-------------cccCCcEEEEEeCC
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV-------------QDHFDLKTWTCVSD 255 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~ 255 (1450)
+++|.+..++.+...+..+.. .....++|+.|+||+++|..+++..-- ...+....|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl-----~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRI-----APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 589999999999999966532 468899999999999999888763210 11122234442110
Q ss_pred ccCHHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 037733 256 DFDVIRLTKAILTSIVAG-QNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII 329 (1450)
Q Consensus 256 ~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 329 (1450)
..+-..+-..-++..+.. .....-..++. +.+.+.+ .+++-++|+|+++..+......+...+..-.+..-|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 000000000111111100 00011112222 2233332 3567799999998877777777777665434333344
Q ss_pred EecCchHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 330 VTTRNHEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 330 vTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
+|++...+...+ .....+++.++++++..+.+.+...... .......++..++|.|..+....
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCCHHHHHHHH
Confidence 555444443322 3346799999999999999987642211 11124678999999997665433
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0017 Score=79.83 Aligned_cols=192 Identities=17% Similarity=0.160 Sum_probs=107.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--...-+ ..+.+.-...+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986543 246677899999999999999976321100000 00000001111111
Q ss_pred HHhhcC----CCCCCCCHHHHHHHHHH----HhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchHHH
Q 037733 268 TSIVAG----QNVDNHDLNKLQVELNK----QLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHEVA 338 (1450)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~v~ 338 (1450)
...... ........+++...+.. -..+++-++|+|++..-....+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 00001112222211111 1235566889999987766777777766654444555454 54444333
Q ss_pred Hh-cCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHH
Q 037733 339 EI-MGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
.. ......+++.+++.++....+...+.... ....+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 22 22335688999999998887766542211 2335677888899988775443
No 153
>CHL00181 cbbX CbbX; Provisional
Probab=97.56 E-value=0.0014 Score=73.22 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=71.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
...+.++|++|+||||+|+.+++.....+.-...-|+.++. .+ +.....+.. .......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---
Confidence 34578999999999999999987321111111112444441 12 222222111 11122223322
Q ss_pred CcEEEEEeCCCCC---------ChhhHHhhhccccCCCCCcEEEEecCchHHHHhc--------CCCCceeCCCCCHHHH
Q 037733 295 KKFLLVLDDVWNE---------NYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIM--------GTVPPHPLKELSDNDC 357 (1450)
Q Consensus 295 kr~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~--------~~~~~~~l~~L~~~~~ 357 (1450)
..-+|++|++..- ..+....+...+.....+.+||+++....+.... .....+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2248999999642 1122233344444444556777777654332211 1124688999999998
Q ss_pred HHHHHhcc
Q 037733 358 LAIFAQHS 365 (1450)
Q Consensus 358 ~~lf~~~~ 365 (1450)
.+++...+
T Consensus 202 ~~I~~~~l 209 (287)
T CHL00181 202 LQIAKIML 209 (287)
T ss_pred HHHHHHHH
Confidence 88887664
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0018 Score=76.96 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=88.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
..-+.|+|+.|+|||+||+++++.. ...-..+++++. ..+...+...+... .. ..++...+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~------~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG------EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc------hH----HHHHHHcc-
Confidence 4568899999999999999999843 222233455542 33444555444321 11 22333333
Q ss_pred CcEEEEEeCCCCCChhhH--HhhhccccC-CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHHH
Q 037733 295 KKFLLVLDDVWNENYNYW--VEFSRPFEA-GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIFA 362 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~~~~--~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1450)
..-+|++||+.......| +.+...+.. ...|..||+||... .+..++.....+++.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 344888899965322111 222222211 12355788888542 223334445678999999999999998
Q ss_pred hccCCCC-chhHHHHHHHHHHhCCCh
Q 037733 363 QHSLGPR-ELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 363 ~~~~~~~-~~~~~~~~~i~~~~~G~P 387 (1450)
+++.... ...+++..-|++.+.|.-
T Consensus 282 ~k~~~~~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSIRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCH
Confidence 7764322 233566666777766543
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.55 E-value=0.0012 Score=79.83 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccC--CcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHF--DLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
..-+.|+|++|+|||+||+++++. ....+ ..+++++. .++..++...+... ..+. +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHHH----HHHHH
Confidence 456889999999999999999984 43333 23445543 23344444444221 1222 33333
Q ss_pred CCCcEEEEEeCCCCCChh--hHHhhhccccC-CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHH
Q 037733 293 SGKKFLLVLDDVWNENYN--YWVEFSRPFEA-GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAI 360 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~~~--~~~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 360 (1450)
+ +.-+|||||++..... ..+.+...+.. ...|..||+||... .+..++.....+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 2448999999653211 11222222211 12345688877653 1233444446789999999999999
Q ss_pred HHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 361 FAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 361 f~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
+.+.+... ....+++..-|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHH
Confidence 98876432 23457788899999998876544
No 156
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.53 E-value=0.0013 Score=73.79 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKK 296 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr 296 (1450)
-+.++|++|+||||+|+.+++...........-|+.++. .+ +...+.+.. .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc------hHHHHHHHHHc---cC
Confidence 578999999999999988776321111111123444432 11 222222211 11222223322 23
Q ss_pred EEEEEeCCCCC---------ChhhHHhhhccccCCCCCcEEEEecCchHHHHhcC--------CCCceeCCCCCHHHHHH
Q 037733 297 FLLVLDDVWNE---------NYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMG--------TVPPHPLKELSDNDCLA 359 (1450)
Q Consensus 297 ~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 359 (1450)
-+|+||++..- ....+..+...+.....+.+||+++.......... ....+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999632 11223444455544445667777765432221111 12458899999999998
Q ss_pred HHHhcc
Q 037733 360 IFAQHS 365 (1450)
Q Consensus 360 lf~~~~ 365 (1450)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 887654
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.0014 Score=78.42 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=94.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccC-C-cEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHF-D-LKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
..-+.|+|.+|+|||+||+++++. ..... . .++|++. .++..++...+... ..++ +++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 345899999999999999999984 33322 2 3556553 34555665555321 1222 33333
Q ss_pred CCCcEEEEEeCCCCCC-hhhH-HhhhccccC-CCCCcEEEEecC-chH--------HHHhcCCCCceeCCCCCHHHHHHH
Q 037733 293 SGKKFLLVLDDVWNEN-YNYW-VEFSRPFEA-GAQGSKIIVTTR-NHE--------VAEIMGTVPPHPLKELSDNDCLAI 360 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~-~~~~-~~~~~~l~~-~~~gs~ilvTtr-~~~--------v~~~~~~~~~~~l~~L~~~~~~~l 360 (1450)
+.+.-+||+||+.... ...+ +.+...+.. ...|..||+||. ... +..++.....+++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345689999996431 1111 122222211 123456888875 321 222334445789999999999999
Q ss_pred HHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 361 FAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 361 f~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
+.+.+... ....+++..-|++.+.|..-.+.
T Consensus 272 L~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHGELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCCCCCHHHHHHHHhccccCHHHHH
Confidence 98876422 22446788888888888654444
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.42 E-value=0.0013 Score=85.41 Aligned_cols=155 Identities=23% Similarity=0.222 Sum_probs=85.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---ccccC-CcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR---VQDHF-DLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 263 (1450)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 458999999999999996542 12346999999999999999987421 11111 344552 1 111111
Q ss_pred HHHHHHhhcCCCCCCCCHHH-HHHHHHHHhCCCcEEEEEeCCCCC-------ChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 264 KAILTSIVAGQNVDNHDLNK-LQVELNKQLSGKKFLLVLDDVWNE-------NYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~-------~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
.+ .. -..+.++ +...+.+.-+.++.+|++|++..- ....-..+..+.... ..-++|.+|...
T Consensus 248 -------ag-~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AG-TK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLD 317 (821)
T ss_pred -------cc-CC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHH
Confidence 11 11 1122222 223333333457899999999421 001112222222221 234566666655
Q ss_pred HHHHh-------cCCCCceeCCCCCHHHHHHHHHh
Q 037733 336 EVAEI-------MGTVPPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 336 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 363 (1450)
+.... ......+.++..+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12335678888999998887754
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=5.2e-05 Score=70.07 Aligned_cols=96 Identities=23% Similarity=0.234 Sum_probs=80.1
Q ss_pred HHHHHhccccccEEEecCCCCCcCCcCccCC-CccceeeccCCCcccccccccccCCccEEecCCCCchhHhhhhhhhhc
Q 037733 588 ILRKLLKLQRLRVFSLCGYHISKLPDSIGDL-RYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLI 666 (1450)
Q Consensus 588 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L-~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~ 666 (1450)
.+..+.+..+|...+|++|.+.++|..|... +.+.+|+|++|.|.++|+.+..++.|+.|+++. +.+...|.-|..|.
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLI 123 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHH
Confidence 3445567788888999999999998877544 489999999999999999999999999999998 57788888888899
Q ss_pred ccCcccccCCCCCccCCCC
Q 037733 667 RLHHLKNSNTHSLEEMPLG 685 (1450)
Q Consensus 667 ~L~~L~l~~~~~l~~lp~~ 685 (1450)
+|-.|+..++. ...+|..
T Consensus 124 ~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hHHHhcCCCCc-cccCcHH
Confidence 99999988887 6666654
No 160
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.37 E-value=0.0051 Score=79.47 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=84.9
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
+.+++|.++.++++.+++.........+..++.++|++|+|||++|+.+++. ....|- -+.++...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHcC--
Confidence 3458899999999988775321112233458999999999999999999983 333332 122333223222211
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh----hHHhhhcc--------ccCC-------CCCcE
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYN----YWVEFSRP--------FEAG-------AQGSK 327 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~--------l~~~-------~~gs~ 327 (1450)
. .... .......+.+.+...- .++-+|+||.++..... ....+... |... ..+..
T Consensus 392 --~--~~~~-~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 392 --H--RRTY-VGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred --C--CCce-eCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0 0000 1111222333344332 33347899999654211 01112111 1111 12333
Q ss_pred EEEecCchH-HHH-hcCCCCceeCCCCCHHHHHHHHHhc
Q 037733 328 IIVTTRNHE-VAE-IMGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 328 ilvTtr~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
+|.||.... +.. .......+++.+++.++-.+++.++
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 445554432 111 1123356888999988888777654
No 161
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0036 Score=74.14 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=70.2
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
+.+-+|.++-+++|++++.-..-+++.+.+++..+|++|||||.+|+.++. ...+.|. -+++++-.|..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhccc-
Confidence 456789999999999999766555667889999999999999999999997 4444442 2456665554433211
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
..+.... -...+.+.++.. +...-|+.||.|+.
T Consensus 484 -----RRTYVGA-MPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 -----RRTYVGA-MPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred -----ceeeecc-CChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0011011 123344444332 45567888999854
No 162
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.0028 Score=80.78 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=89.5
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
+...+|.++.+++|+++|.........+..++.++|++|+||||+|+.++. .....|- -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccch
Confidence 456899999999999988742211223456899999999999999999997 3333332 23333333332221110
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhh----HHhhhccccC---------------CCCCcE
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNY----WVEFSRPFEA---------------GAQGSK 327 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~~~~~l~~---------------~~~gs~ 327 (1450)
....+ .....+.+.+... ....-+++||.++...... ...+...+.+ .-...-
T Consensus 396 -~~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 -RTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred -hccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 00000 1112233333332 2234478899996542211 1222222221 113334
Q ss_pred EEEecCchHHHHh-cCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 328 IIVTTRNHEVAEI-MGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 328 ilvTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
+|.|+....+... .+....+++.+++++|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4556654433221 1233568889999888888777654
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0011 Score=83.56 Aligned_cols=156 Identities=23% Similarity=0.265 Sum_probs=86.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-c---CCcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD-H---FDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~ 263 (1450)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+++...... . .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 4599999999999999976421 2346899999999999999987321111 1 13444421 11111
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCC--------ChhhHHhhhccccCCCCCcEEEEecCc
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQL-SGKKFLLVLDDVWNE--------NYNYWVEFSRPFEAGAQGSKIIVTTRN 334 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~ilvTtr~ 334 (1450)
..+.. -..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|..
T Consensus 254 -------laG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred -------hcccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 11110 1112222222222222 356789999999531 112222233333322 23445555554
Q ss_pred hHHHHh-------cCCCCceeCCCCCHHHHHHHHHhc
Q 037733 335 HEVAEI-------MGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 335 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
.+.... ......+.+++.+.+++.+++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 433211 122357899999999999998754
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0068 Score=73.32 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=93.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccC--CcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHF--DLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1450)
..+.|+|..|+|||.|++++++. ....+ ..+++++. .++..++...+... ..+ .+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------~~~----~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGD----SFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHH----HHHHHhh
Confidence 45899999999999999999984 33222 23455543 34444444444221 112 2333333
Q ss_pred CCcEEEEEeCCCCCCh-hhHHh-hhccccC-CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHH
Q 037733 294 GKKFLLVLDDVWNENY-NYWVE-FSRPFEA-GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIF 361 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~-~~~~~-~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 361 (1450)
+ -=+|||||+..... ..|.. +...+.. ...|..|||||+.. .+...+...-.+++++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 34788999965422 22322 2222211 12355688888752 34445556677899999999999999
Q ss_pred HhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 362 AQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 362 ~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
.+++... -..-++++.-|++.+.+..-.+.
T Consensus 456 ~kka~~r~l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 456 RKKAVQEQLNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhccCCHHHHH
Confidence 8876432 22346777778887776644443
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0047 Score=71.02 Aligned_cols=148 Identities=10% Similarity=0.119 Sum_probs=89.6
Q ss_pred eec-chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--------------------cCCcE
Q 037733 190 VYG-REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD--------------------HFDLK 248 (1450)
Q Consensus 190 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~ 248 (1450)
++| -+..++.+...+..+. -.....++|+.|+||||+|+.+++..--.. |-|.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~- 80 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV- 80 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-
Confidence 566 6667777777775442 246778999999999999999876321111 1111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCC
Q 037733 249 TWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQ 324 (1450)
Q Consensus 249 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 324 (1450)
.++.... .....+++.+..... ..+++-++|+|++...+......+...+..-..
T Consensus 81 ~~i~~~~---------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 HLVAPDG---------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred EEecccc---------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1111000 111122222222111 234556799999987776777777777776566
Q ss_pred CcEEEEecCch-HHHHh-cCCCCceeCCCCCHHHHHHHHHhc
Q 037733 325 GSKIIVTTRNH-EVAEI-MGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 325 gs~ilvTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
++.+|++|... .+... ......+++.++++++..+.+...
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77777766553 33322 233467899999999998888764
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.28 E-value=0.00049 Score=67.91 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 569999999999999999984
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0093 Score=67.24 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-----cEEEEEeCCccCHHHHHHHHHHH
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-----LKTWTCVSDDFDVIRLTKAILTS 269 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i~~~ 269 (1450)
...+++...+..+. -...+.++|+.|+||+++|..+++..--..... +.-|+..+..+|...+... -+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 44566666664432 245788999999999999998876321111000 0001111111110000000 000
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHHHh-cC
Q 037733 270 IVAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVAEI-MG 342 (1450)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~-~~ 342 (1450)
.+......-..+++. .+.+.+ .+++-++|+|+++..+...-..+...+..-..++.+|++|.. ..+... ..
T Consensus 85 -~~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 85 -TGDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred -ccccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 000000001122222 222222 355679999999887766666777666555567766666654 333322 23
Q ss_pred CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 343 TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 343 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
....+.+.+++.+++.+.+.... . ..+.+..++..++|.|+.+..+.
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~~--~---~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQG--V---SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHcC--C---ChHHHHHHHHHcCCCHHHHHHHh
Confidence 33678899999999998887642 1 13346778999999998765444
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.0013 Score=66.04 Aligned_cols=88 Identities=22% Similarity=0.081 Sum_probs=47.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.|+|++|+||||+|+.++... ......++++..+........... ........ ...........+....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999843 222223555554433322111111 11111111 1222222333344444433
Q ss_pred -cEEEEEeCCCCCC
Q 037733 296 -KFLLVLDDVWNEN 308 (1450)
Q Consensus 296 -r~LlVlDdv~~~~ 308 (1450)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4999999997753
No 169
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=3.4e-05 Score=71.22 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=85.7
Q ss_pred ccccccEEEecCCCCCcCCc---CccCCCccceeeccCCCccccccccc-ccCCccEEecCCCCchhHhhhhhhhhcccC
Q 037733 594 KLQRLRVFSLCGYHISKLPD---SIGDLRYLRYLNLSGTGIRTLPESVN-KLYNLHTLLLNDCHQLKKLCADMEDLIRLH 669 (1450)
Q Consensus 594 ~~~~Lr~L~L~~~~i~~lp~---~i~~L~~Lr~L~L~~~~i~~LP~~i~-~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 669 (1450)
.-+.+-.+||+.|.+..+++ .+....+|...+|++|.+++.|+.+. +.+.+.+|++.+ +.+..+|..+..++.|+
T Consensus 25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 44567788999998876654 45677889999999999999999984 556999999998 78999999999999999
Q ss_pred cccccCCCCCccCCCCCCCccccccc
Q 037733 670 HLKNSNTHSLEEMPLGIGKLTCLQTL 695 (1450)
Q Consensus 670 ~L~l~~~~~l~~lp~~i~~L~~L~~L 695 (1450)
.|+++.|. +...|.-|..|.+|-.|
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHh
Confidence 99999998 88888888888877777
No 170
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.013 Score=66.11 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-------cEEEEEeCCccCHHHHHHHHH
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-------LKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-------~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
...+++...+..+. -...+.++|+.|+||+++|+.++...--...-+ ..-++..+..+|...+
T Consensus 10 ~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (319)
T PRK06090 10 PVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI----- 79 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 34556666664432 356788999999999999999875211000000 0000001111111000
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHHHh-
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVAEI- 340 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~- 340 (1450)
........-..+++.. +.+.+ .+++=++|+|+++..+......+...+..-..++.+|++|.+ ..+...
T Consensus 80 ---~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 80 ---KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred ---ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000001112233322 22222 345568999999888778888888777665566766665554 444432
Q ss_pred cCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 037733 341 MGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 341 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
......+.+.+++++++.+.+..... . .+..++..++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~~--~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQGI--T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcCC--c-----hHHHHHHHcCCCHHHHHHH
Confidence 23346789999999999998876421 1 2456789999999977655
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.24 E-value=0.003 Score=73.85 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=94.8
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|.+..++++.+.+...-. .+-...+-+.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4588999888888776632100 01124567889999999999999999984 22222 22211 1
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hh----hHHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------YN----YWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~~~~~l~~--~~~ 324 (1450)
.+ .....+ .....+...+.......+.+|++|+++... .. .+..+...+.. ...
T Consensus 214 ~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 EF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 111111 111223333334445678999999985310 00 11122222221 224
Q ss_pred CcEEEEecCchHHH-Hhc-C---CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 325 GSKIIVTTRNHEVA-EIM-G---TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
+..||+||...+.. ..+ . -...+++...+.++..++|..+...-.-...-...++++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC
Confidence 56788888764332 111 1 224578888888888888875542211111112345566666653
No 172
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.22 E-value=0.0037 Score=73.57 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCc
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKK 296 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr 296 (1450)
++.|.|+-++||||+++.+... .... .+++...+......-..+ ....+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d------------------~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD------------------LLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH------------------HHHHHHHhhccCC
Confidence 9999999999999999777663 2222 455544332211111111 1111111112278
Q ss_pred EEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHH-----Hhc-CCCCceeCCCCCHHHHHHHHHhccCCCCc
Q 037733 297 FLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVA-----EIM-GTVPPHPLKELSDNDCLAIFAQHSLGPRE 370 (1450)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 370 (1450)
..|+||.|... ..|......+.+.+.. +|++|+-+.... ... |....+++-||+..|...+-...+...
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~-- 170 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPS-- 170 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchh--
Confidence 89999999776 7899988888876666 888888775433 222 445678999999999876543100000
Q ss_pred hhHHHHHHHHHHhCCChHHHHH
Q 037733 371 LLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 371 ~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
.. +..-+---..||.|-++..
T Consensus 171 ~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 171 KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred HH-HHHHHHHHHhCCCcHHHhC
Confidence 01 1122222347899987754
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.22 E-value=0.0036 Score=81.69 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=83.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc------CCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH------FDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~~~~~~~~~ 261 (1450)
.++|||+.+++++++.|.... ..-+.++|++|+|||++|+.+++. +... ....+|.- ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 459999999999999996542 234458999999999999999874 2211 12333321 1111
Q ss_pred HHHHHHHHhhcCCCCCCCCHHH-HHHHHHHHhC-CCcEEEEEeCCCCCC-------hhhHHhhhccccCCCCCcEEEEec
Q 037733 262 LTKAILTSIVAGQNVDNHDLNK-LQVELNKQLS-GKKFLLVLDDVWNEN-------YNYWVEFSRPFEAGAQGSKIIVTT 332 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTt 332 (1450)
+. .+.. ...+.+. +...+...-+ +++.+|++|++..-. ..+-..+..+.... ..-++|-+|
T Consensus 240 l~--------a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaT 309 (852)
T TIGR03346 240 LI--------AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGAT 309 (852)
T ss_pred Hh--------hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeC
Confidence 11 0000 0112222 2222322222 468999999996421 01111222222222 223455555
Q ss_pred CchHHHHh-------cCCCCceeCCCCCHHHHHHHHHhc
Q 037733 333 RNHEVAEI-------MGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 333 r~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
...+.... ......+.+...+.++...++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 54433211 123356789999999999888654
No 174
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.18 E-value=0.0008 Score=79.07 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=86.7
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|.+..++++.+.+.-.-. -+-...+-+.++|++|+|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578999999888887742100 01123456789999999999999999983 33333 1121111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hh----hHHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------YN----YWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~~~~~l~~--~~~ 324 (1450)
+. ....+ .....+...+.....+.+.+|+||+++... .. ....+...+.. ...
T Consensus 253 -L~----~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -LI----QKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hh----hhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 11100 111222333333334677899999874310 00 01112211211 133
Q ss_pred CcEEEEecCchHHHHh-c---C-CCCceeCCCCCHHHHHHHHHhcc
Q 037733 325 GSKIIVTTRNHEVAEI-M---G-TVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 325 gs~ilvTtr~~~v~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
+.+||+||...+.... + + ....+++...+.++..++|..+.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 5678888876544322 2 1 12467889999999999998765
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.18 E-value=0.0034 Score=77.77 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=97.4
Q ss_pred cceecchhHHHHHHHH---HhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDL---LLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.++.++++.+. +..... .+....+-|.++|++|+|||++|+++++.. .. -|+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccH----HH
Confidence 4578887766555444 332211 011234568899999999999999999842 21 1233321 11
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhH----HhhhccccC--CCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------YNYW----VEFSRPFEA--GAQG 325 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~----~~~~~~l~~--~~~g 325 (1450)
+.. ...+ .....+...+.......+++|++||++.-. ...+ ..+...+.. ...+
T Consensus 252 f~~----~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FVE----MFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----Hhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 0000 112233444555556788999999995321 1122 222222221 2345
Q ss_pred cEEEEecCchHHHH-hc----CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC
Q 037733 326 SKIIVTTRNHEVAE-IM----GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 326 s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~ 386 (1450)
..||.||...+... .+ .-...+.+...+.++-.++++.++.............+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCC
Confidence 56777776644322 11 122567888888888888888776443222334556778888773
No 176
>PRK08116 hypothetical protein; Validated
Probab=97.17 E-value=0.0014 Score=72.52 Aligned_cols=104 Identities=24% Similarity=0.248 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.++|.+|+|||.||.++++.. ..+-..+++++ ..+++..+........ ..+..+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 358899999999999999999953 22233455554 3344555544432211 112222 23334433
Q ss_pred cEEEEEeCCCCCChhhHHh--hhccccC-CCCCcEEEEecCch
Q 037733 296 KFLLVLDDVWNENYNYWVE--FSRPFEA-GAQGSKIIVTTRNH 335 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtr~~ 335 (1450)
. ||||||+..+....|.. +...+.. ...|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996544344543 2222221 13456799999753
No 177
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.13 E-value=0.0029 Score=77.63 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=41.2
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
-.+++|-++.++++..++..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999865432 2233468999999999999999999974
No 178
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.12 E-value=0.0048 Score=62.70 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=77.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc------------------ccCCcEEEEEe
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ------------------DHFDLKTWTCV 253 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 253 (1450)
|-++..+.+...+..+. -...+.++|+.|+||+|+|..+++..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45666777777775543 24578899999999999999987632111 11223334432
Q ss_pred CCc---cCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE
Q 037733 254 SDD---FDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV 330 (1450)
Q Consensus 254 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 330 (1450)
... ....++. ++...+.... ..+++=++|+||++....+.+..++..+.....++++|+
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 221 1222221 2222222111 134566899999998888889999888877778889888
Q ss_pred ecCchH-HHHh-cCCCCceeCCCC
Q 037733 331 TTRNHE-VAEI-MGTVPPHPLKEL 352 (1450)
Q Consensus 331 Ttr~~~-v~~~-~~~~~~~~l~~L 352 (1450)
+|++.. +... ......+.+.++
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE---
T ss_pred EECChHHChHHHHhhceEEecCCC
Confidence 887653 3222 222344555544
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.011 Score=70.59 Aligned_cols=166 Identities=17% Similarity=0.248 Sum_probs=95.7
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
+.+.+|-++-+++|++.|.-......-+.+++.+||++|+|||+|++.+++ ...+.|- -+++++-.|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGH- 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGH- 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhccc-
Confidence 456789999999999999644322344568999999999999999999998 5555552 2344444444332210
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh----hHHhhhccccCCC-------------CCcEEE
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYN----YWVEFSRPFEAGA-------------QGSKII 329 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~l~~~~-------------~gs~il 329 (1450)
..+..... ...+.+.+++. +.+.-+++||.++....+ --.++...+.+.. -=|.|+
T Consensus 396 -----RRTYIGam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 -----RRTYIGAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred -----cccccccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00110111 22333333332 566789999999653211 0111111111100 124444
Q ss_pred -EecCc-hH-H-HHhcCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 330 -VTTRN-HE-V-AEIMGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 330 -vTtr~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
|||-+ -+ + +..+....++++.+-+++|=.++-++|.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34433 22 2 2223455789999999999888887765
No 180
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.11 E-value=5.6e-05 Score=94.07 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=6.7
Q ss_pred CCCCCCCceecccCC
Q 037733 1235 DNNTSLEKIDTSDCE 1249 (1450)
Q Consensus 1235 ~~~~~L~~L~L~~n~ 1249 (1450)
..+++|+.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 334444444444444
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.10 E-value=0.0038 Score=66.67 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=76.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe----CC-----ccC
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV----SD-----DFD 258 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~-----~~~ 258 (1450)
..+.+|......+..++.+. .+|.+.|++|+|||+||.+++.+.-..+.|+.++.+.- ++ +.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34678888899999988542 48999999999999999998874322344554433211 11 011
Q ss_pred HH----HHHHHHHHHhhcCCCCCCCCHHHHHHHH-----------HHHhCCCcE---EEEEeCCCCCChhhHHhhhcccc
Q 037733 259 VI----RLTKAILTSIVAGQNVDNHDLNKLQVEL-----------NKQLSGKKF---LLVLDDVWNENYNYWVEFSRPFE 320 (1450)
Q Consensus 259 ~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~l-----------~~~l~~kr~---LlVlDdv~~~~~~~~~~~~~~l~ 320 (1450)
.. -.++-+...+..-. .. +.....+ -.++++..+ +||+|.+.+.+......+...
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR-- 199 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR-- 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--Ch---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh--
Confidence 11 11222222221100 00 1111111 124556554 999999988766555555443
Q ss_pred CCCCCcEEEEecCchHH
Q 037733 321 AGAQGSKIIVTTRNHEV 337 (1450)
Q Consensus 321 ~~~~gs~ilvTtr~~~v 337 (1450)
.+.+|++|+|--..++
T Consensus 200 -~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 200 -LGENVTVIVNGDITQC 215 (262)
T ss_pred -cCCCCEEEEeCChhhc
Confidence 3679999998765443
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0036 Score=81.22 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=37.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+++||+.+++++++.|.... ..-+.++|++|+||||+|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999996642 234569999999999999999884
No 183
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.00016 Score=74.73 Aligned_cols=234 Identities=15% Similarity=0.013 Sum_probs=124.1
Q ss_pred CCccEEEecCCCchhhh----hhhcCCCCCccEEEeecccCcc---cc-------CccccCCCCCcEEEEccCCCccchh
Q 037733 1166 PSLKFLEVNSCSKLESV----AERLDNNTSLERIRIYFCENLK---NL-------PSGLHNLRQLREIRISLCSKLESIA 1231 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~---~~-------~~~l~~l~~L~~L~l~~n~~~~~~~ 1231 (1450)
..+.+++||+|.+.+.. ...+.+-.+|+..++++-.... .+ ...+..||.|+..+||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 45667777777665433 2334445566666665522110 11 1234566777777777776654333
Q ss_pred c----ccCCCCCCCceecccCCCccc----cc---------ccccCCCccceEeeccCCCccccCC-----CCCCCCCcc
Q 037733 1232 E----RLDNNTSLEKIDTSDCENLKI----LP---------SGLHNLHQLREIILFRCGNLVSFPE-----GGLPCAKLT 1289 (1450)
Q Consensus 1232 ~----~~~~~~~L~~L~L~~n~~~~~----~~---------~~l~~l~~L~~L~l~~n~~~~~~~~-----~~~~l~~L~ 1289 (1450)
+ .+...+.|+.|.+++|.+-.. +. .-...-|.|+......|.+-. .+. .+..-..|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCce
Confidence 2 344556677777777664211 10 012334667777776665532 111 111113677
Q ss_pred eEeeccCCCccc-----CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeecc
Q 037733 1290 RLEISYCKRLQA-----LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGIS 1364 (1450)
Q Consensus 1290 ~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 1364 (1450)
.+.+..|.+... +-..+..+.+|+.|||..|.+ ...| ...+..++...+.|..|.+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf-----t~~g-------------S~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF-----TLEG-------------SRYLADALCEWNLLRELRLN 250 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch-----hhhh-------------HHHHHHHhcccchhhhcccc
Confidence 777777765432 112345667788888877721 1111 00111122223457788888
Q ss_pred ccCCCcccc----ccC--CCCCCCCeeeccCCCCCCC------CCCC--CCccccccccccCChhhHH
Q 037733 1365 RFPNLERLS----SSI--VDLQNLTELIIEDCPKLKY------FPEK--GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1365 ~n~~~~~~~----~~~--~~l~~L~~L~l~~n~~~~~------~~~~--~~~~~L~~L~l~~n~l~~~ 1418 (1450)
+|-....-. ..| ...|+|..|-..+|..-.. +++. ...+-|..|.+.||++.+.
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 876444211 112 2347788888887753321 2322 5567788899999998665
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.025 Score=63.98 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC---Cc-----EEEEEeCCccCHHHHHHHHH
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF---DL-----KTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i~ 267 (1450)
..+.+...+..+. -.....++|+.|+||+++|++++...--.... .| .-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 3455666664432 24577899999999999999987632110100 00 000111111111100
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHHHh-
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVAEI- 340 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~- 340 (1450)
. +.....-..+++.+ +.+.+ .+++=++|+|+++..+......+...+..-..++.+|++|... .+...
T Consensus 80 ---~-p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 80 ---E-PIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred ---c-cccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 0 00001112333322 22222 3566688899998887778888887777656677776666553 44322
Q ss_pred cCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHH
Q 037733 341 MGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 341 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai 390 (1450)
......+.+.+++++++.+.+...... . ...+...+..++|.|+.+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~~-~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSSA-E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhcc-C---hHHHHHHHHHcCCCHHHH
Confidence 233467899999999999888765321 1 223566788999999644
No 185
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=6.5e-05 Score=93.47 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=18.5
Q ss_pred CCCCccEEEeeccCCccc---ccCCCCCCCccEEEEeC
Q 037733 1109 NNSSLEILCVLHCQLLTY---IAGVQLPPSLKRLDIYG 1143 (1450)
Q Consensus 1109 ~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~ 1143 (1450)
.++.|+.|.+.+|..... .+....++.|+.|++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 356666666666654432 22334455556665555
No 186
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.00011 Score=76.01 Aligned_cols=113 Identities=20% Similarity=0.073 Sum_probs=59.6
Q ss_pred CCCccEEEeecccCcccc----CccccCCCCCcEEEEccCCCccc-----hhcccCCCCCCCceecccCCCcc----ccc
Q 037733 1189 NTSLERIRIYFCENLKNL----PSGLHNLRQLREIRISLCSKLES-----IAERLDNNTSLEKIDTSDCENLK----ILP 1255 (1450)
Q Consensus 1189 l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~----~~~ 1255 (1450)
-|.|++.....|++-.-. ...+..-..|+.+.+..|.+... .-..+..+.+|+.|||.+|.++. .+.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 345555555555543210 11222234566666666655421 11233456677777777776553 223
Q ss_pred ccccCCCccceEeeccCCCccccCCC----C--CCCCCcceEeeccCCCccc
Q 037733 1256 SGLHNLHQLREIILFRCGNLVSFPEG----G--LPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1256 ~~l~~l~~L~~L~l~~n~~~~~~~~~----~--~~l~~L~~L~l~~n~~~~~ 1301 (1450)
..++.++.|++|.+.+|-+...-... + ...++|..|...+|...+.
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 45566777788888777665321111 1 1136777777777766543
No 187
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.014 Score=66.95 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=99.2
Q ss_pred CcceecchhHHH-HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 187 KTEVYGREIEKK-QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 187 ~~~~vGr~~~~~-~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
+.-++|-..... .+....... .+.....+.|+|..|.|||.|++++.+ ....+......+.++ ......+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHH
Confidence 445667554433 233333222 122467899999999999999999998 444444433333332 3344445
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-hhHH-hhhccccC-CCCCcEEEEecCc--------
Q 037733 266 ILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-NYWV-EFSRPFEA-GAQGSKIIVTTRN-------- 334 (1450)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~ilvTtr~-------- 334 (1450)
.+..+... -.+.+++.. .-=++++||++--.. +.|+ ++...|.. ...|-.||+|++.
T Consensus 158 ~v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 158 FVKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 54444321 223444544 334889999965211 1222 22222221 1234489999965
Q ss_pred -hHHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHh
Q 037733 335 -HEVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKC 383 (1450)
Q Consensus 335 -~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~ 383 (1450)
+.+.+++...-.+++.+.+.+....++.+++.... ...++++.-|++..
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~ 276 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRL 276 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 34555666677899999999999999888653322 12234444444443
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.01 E-value=0.0059 Score=74.92 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=93.5
Q ss_pred cceecchhHHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLL---RDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|-++.++++.+++. ..+. .+....+-+.++|++|+|||++|+++++.. ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 457888877666555443 1110 011223458899999999999999999742 222 222221 11
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHHh----hhccccC--CCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------YNYWVE----FSRPFEA--GAQG 325 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----~~~~l~~--~~~g 325 (1450)
+. ....+ .....+...+.......+.+|++|+++.-. ...+.. +...+.. ...+
T Consensus 124 ~~----~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 FV----EMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 11110 112233444444445677899999995421 111222 2211211 2234
Q ss_pred cEEEEecCchHH-HHhc----CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 326 SKIIVTTRNHEV-AEIM----GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 326 s~ilvTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
-.||.||...+. -..+ .-...+.+...+.++-.++|..+..............+++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCC
Confidence 456667765432 1111 1235678888888888888877653322111223457788887743
No 189
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.01 E-value=0.0092 Score=60.69 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++||-++.++++.-+-.++ +.+-+.|.||+|+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHH
Confidence 56999999999887776443 4567889999999999988888773
No 190
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.95 E-value=0.005 Score=73.53 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=88.0
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc-----CCcEEEEEeCC
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH-----FDLKTWTCVSD 255 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~ 255 (1450)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|+|||++|+++++.. ... .....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 4577899999988887642110 011234568899999999999999999843 222 12334444432
Q ss_pred ccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCC-------hhh-----HHhhhccccCC
Q 037733 256 DFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ-LSGKKFLLVLDDVWNEN-------YNY-----WVEFSRPFEAG 322 (1450)
Q Consensus 256 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~~~~~l~~~ 322 (1450)
.. + +....+. .......+....+.. -.+++++|+||+++..- ... ...+...+...
T Consensus 260 ~e----L----l~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 260 PE----L----LNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred hh----h----cccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 11 1 1110000 000111122222221 23578999999996420 011 11232222221
Q ss_pred --CCCcEEEEecCchHHHH-hc----CCCCceeCCCCCHHHHHHHHHhccC
Q 037733 323 --AQGSKIIVTTRNHEVAE-IM----GTVPPHPLKELSDNDCLAIFAQHSL 366 (1450)
Q Consensus 323 --~~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 366 (1450)
..+..||.||...+... .+ .-...+++...+.++..++|..+..
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 13445566665543321 11 1124589999999999999988753
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.014 Score=66.74 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 212 DGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
......+.+.|++|+|||+||..++. ...|..+--++..+..... +......+...+.+.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s----------------EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS----------------ESAKCAHIKKIFEDA 594 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc----------------HHHHHHHHHHHHHHh
Confidence 34567788999999999999999986 3457654433321111100 111122334445556
Q ss_pred hCCCcEEEEEeCCCCCChhhHHhh---------------hccccCCCCCcEEEEecCchHHHHhcCC----CCceeCCCC
Q 037733 292 LSGKKFLLVLDDVWNENYNYWVEF---------------SRPFEAGAQGSKIIVTTRNHEVAEIMGT----VPPHPLKEL 352 (1450)
Q Consensus 292 l~~kr~LlVlDdv~~~~~~~~~~~---------------~~~l~~~~~gs~ilvTtr~~~v~~~~~~----~~~~~l~~L 352 (1450)
.++.--.||+||+..- -+|..+ ....|+.++.--|+-||....+.+.|+- ...|.++.+
T Consensus 595 YkS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred hcCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 6777889999999442 333222 2222333333335558888888887753 356889999
Q ss_pred CH-HHHHHHHHhccCCCCchhHHHHHHHHHHh
Q 037733 353 SD-NDCLAIFAQHSLGPRELLDEIGKKLVSKC 383 (1450)
Q Consensus 353 ~~-~~~~~lf~~~~~~~~~~~~~~~~~i~~~~ 383 (1450)
+. ++..+.+...-.-..+..+.++.+...+|
T Consensus 673 ~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccCCCcchhHHHHHHHhccc
Confidence 87 77777776543222234455566666665
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=96.88 E-value=0.00053 Score=70.05 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-ccCCcEEE
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQ-DHFDLKTW 250 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 250 (1450)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854333 45677776
No 193
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.87 E-value=0.0014 Score=65.41 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=42.5
Q ss_pred CccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcc--cccccccCCCccceEe
Q 037733 1191 SLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLK--ILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1191 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~ 1268 (1450)
+...+|+++|.+... ..|..++.|.+|.+.+|+++..-|....-+++|..|.|.+|++.. .+ ..+..+|.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 445556666555432 234455666666666666665444433344556666666655432 11 2344555566665
Q ss_pred eccCCC
Q 037733 1269 LFRCGN 1274 (1450)
Q Consensus 1269 l~~n~~ 1274 (1450)
+-+|+.
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 555554
No 194
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.87 E-value=0.0018 Score=68.94 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV 253 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 253 (1450)
-.++|+|..|+||||++..+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3678999999999999999987 46678877777654
No 195
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.048 Score=62.44 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC---Cc-----EEEEEeCCccCHHHHHHHH
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF---DL-----KTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i 266 (1450)
..-+++...+..+. -...+.+.|+.|+||+|+|.+++...--...- .| ..++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--- 80 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---
Confidence 34566777775442 35678899999999999999987532100000 00 0011111112211100
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHHHh
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVAEI 340 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~ 340 (1450)
.......-..+++.+ +.+.+ .+++=++|+|+++..+...-..+...+..-..++.+|++|.. ..+...
T Consensus 81 -----p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 81 -----PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred -----cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 000000112333222 22222 356779999999888777777887777655566666666654 444432
Q ss_pred -cCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHH
Q 037733 341 -MGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 341 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
......+.+.+++++++.+.+.... +. ..+.+..++..++|.|..+..
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~~---~~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-TM---SQDALLAALRLSAGAPGAALA 203 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2334678999999999988886542 11 134477889999999965443
No 196
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.86 E-value=0.028 Score=58.99 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=101.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeC-CccCHHHHHHHHHHHhhcCCCCCCCCHH----HHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVS-DDFDVIRLTKAILTSIVAGQNVDNHDLN----KLQVELN 289 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~l~ 289 (1450)
.+++.++|.-|.|||.++++.... ..+ +.++-+.+. ...+...+...+...+.... ..... .....+.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQP---KVNVNAVLEQIDRELA 123 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCc---cchhHHHHHHHHHHHH
Confidence 468999999999999999955431 111 112223332 34466777778887776632 22222 2233333
Q ss_pred HHh-CCCc-EEEEEeCCCCCChhhHHhhhccccCCCCC---cEEEEecCch-------HHHHhc-CCCCc-eeCCCCCHH
Q 037733 290 KQL-SGKK-FLLVLDDVWNENYNYWVEFSRPFEAGAQG---SKIIVTTRNH-------EVAEIM-GTVPP-HPLKELSDN 355 (1450)
Q Consensus 290 ~~l-~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~~~g---s~ilvTtr~~-------~v~~~~-~~~~~-~~l~~L~~~ 355 (1450)
... +++| ..+++||..+......+.++....-...+ -+|+..-..+ .+.+.. ..... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 332 5777 99999999876655555544332211111 2244332211 111111 12233 899999999
Q ss_pred HHHHHHHhccCC---CCc-hhHHHHHHHHHHhCCChHHHHHHHh
Q 037733 356 DCLAIFAQHSLG---PRE-LLDEIGKKLVSKCGGLPLAAQTLGG 395 (1450)
Q Consensus 356 ~~~~lf~~~~~~---~~~-~~~~~~~~i~~~~~G~PLai~~~~~ 395 (1450)
+...++..+..+ +.+ ...+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888777665432 333 3456777899999999999988764
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.83 E-value=0.014 Score=64.76 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHH
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
+-++++..++..+ .-|.+.|++|+|||++|+.+++ .... ..+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3345555555433 2466899999999999999986 2222 23455555555544443
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.83 E-value=0.0051 Score=71.89 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=36.5
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 22 i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred ccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 8999999999999987663 4789999999999999999873
No 199
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.82 E-value=0.0078 Score=63.45 Aligned_cols=127 Identities=22% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHH
Q 037733 184 LVNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
.+.-..++|.|.+++.|++-...-- .+....-+.+||..|.|||++++++.+...-++ .--|.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-------
Confidence 3445679999999888876543211 111234567899999999999999987321111 122333211
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccC----CCCCcEEEEecCchHHH
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEA----GAQGSKIIVTTRNHEVA 338 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~----~~~gs~ilvTtr~~~v~ 338 (1450)
+..++..+.+.++. +..||+|.+||+.-+ ....+..++..+.. ......|..||..++..
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22334444444442 457999999998433 23445555555443 22334455566555443
No 200
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.81 E-value=0.004 Score=70.15 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=70.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIV 271 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1450)
+|....+...+++..-. .....+-+.++|..|+|||.||.++++... +..+ .+.++++ ..++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHHHh
Confidence 45555555666665322 112346788999999999999999998532 2233 3455554 244555544432
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHh--hhccc-cCC-CCCcEEEEecCc
Q 037733 272 AGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVE--FSRPF-EAG-AQGSKIIVTTRN 334 (1450)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~~l-~~~-~~gs~ilvTtr~ 334 (1450)
. .+..+ .+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~------~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D------GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c------CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11222 2222 2 245689999998776677764 44433 211 235568888874
No 201
>PRK08181 transposase; Validated
Probab=96.80 E-value=0.0025 Score=70.06 Aligned_cols=101 Identities=19% Similarity=0.104 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.-+.++|++|+|||.||.++.+.. ......+.|+++ .++..++..... .......... + .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~l~~----l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR------ELQLESAIAK----L-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHHHHH----H-hc
Confidence 358999999999999999998732 222234555543 344554433221 1122222222 2 23
Q ss_pred cEEEEEeCCCCCChhhHH--hhhccccCCCCCcEEEEecCch
Q 037733 296 KFLLVLDDVWNENYNYWV--EFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~--~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
.=||||||+.......|. .+...+...-.+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999654333332 2222222211123588888864
No 202
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.031 Score=63.71 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=64.7
Q ss_pred CCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CchHHHHh-cCCCCceeCCCCCHHHHHHHHHhccCCCCch
Q 037733 294 GKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-RNHEVAEI-MGTVPPHPLKELSDNDCLAIFAQHSLGPREL 371 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1450)
+++=++|+|+++..+...+..+...+..-..++.+|++| +...+... ......+.+.+++.++..+.+..... . .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~--~-~ 207 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV--A-D 207 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC--C-h
Confidence 455688999999888888888888877656677655554 44444432 23346789999999999998876521 1 1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHH
Q 037733 372 LDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 372 ~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
...++..++|.|..+..+.
T Consensus 208 ----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 ----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ----HHHHHHHcCCCHHHHHHHH
Confidence 2235778899997555443
No 203
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.004 Score=73.71 Aligned_cols=187 Identities=15% Similarity=0.172 Sum_probs=109.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.++||-+.-...|...+....- ...-...|+-|+||||+|+-++.-.--. -| ....+...-..-++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhh
Confidence 3479999999999999866532 3345678999999999999988632111 11 1111111111112221
Q ss_pred HHhhc----CCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHH
Q 037733 268 TSIVA----GQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEV 337 (1450)
Q Consensus 268 ~~l~~----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v 337 (1450)
..-.. -+.......++... +.+.. +++-=+.|+|.|.......|..+..-+..-....+.|+.|.+ ..+
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCcccchhhhhhhccChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 11000 00001112232222 22222 344558899999888888999988877665566666665554 433
Q ss_pred H-HhcCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCCh
Q 037733 338 A-EIMGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 338 ~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~P 387 (1450)
. ......+.|.++.++.++-...+...+.... ...++....|++..+|..
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCCh
Confidence 3 2234457899999999988888876653322 244566677777777754
No 204
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.71 E-value=0.0012 Score=82.56 Aligned_cols=107 Identities=20% Similarity=0.206 Sum_probs=76.1
Q ss_pred cccceeEEeeccccCCCCCchhHHHHHHHh-ccccccEEEecCCCCCcCCcCccCCCccceeeccCCCccccc--ccccc
Q 037733 564 DIQHLRTFLPVMLSNSSPGYLARSILRKLL-KLQRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLP--ESVNK 640 (1450)
Q Consensus 564 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP--~~i~~ 640 (1450)
.+|.||+|.+.+... ...+ +..++ ++++|+.||+++++++.+ ..|++|++|+.|.+++-.++.-+ ..+.+
T Consensus 146 ~LPsL~sL~i~~~~~-----~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQF-----DNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hCcccceEEecCcee-----cchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 468888887655432 1222 33444 999999999999999988 77999999999999887776432 45678
Q ss_pred cCCccEEecCCCCch------hHhhhhhhhhcccCcccccCCC
Q 037733 641 LYNLHTLLLNDCHQL------KKLCADMEDLIRLHHLKNSNTH 677 (1450)
Q Consensus 641 L~~L~~L~L~~c~~l------~~lp~~i~~L~~L~~L~l~~~~ 677 (1450)
|++|++||+|..... ...-+.-..|++||.||.+++.
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999999999863221 1111122348899999988775
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.63 E-value=0.02 Score=74.53 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=75.4
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++.. -..-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 4689999999998888864321 011223578899999999999999998632 11112234444432111 1
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCChhhHHhhhccccCC----C-------CCcEEEEec
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLSG-KKFLLVLDDVWNENYNYWVEFSRPFEAG----A-------QGSKIIVTT 332 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~l~~~----~-------~gs~ilvTt 332 (1450)
.....+.+... .....++ ...+.+.++. ..-+|+||++...+...+..+...+..+ + ..+-||+||
T Consensus 641 ~~~~~LiG~~p-gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 641 HSVSRLVGAPP-GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred hhHHHHhCCCC-cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11222222211 1001000 0112233322 2359999999877777777776655432 1 223377888
Q ss_pred Cc
Q 037733 333 RN 334 (1450)
Q Consensus 333 r~ 334 (1450)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 76
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0065 Score=66.85 Aligned_cols=51 Identities=22% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccc----CCcEEEEEeCCccCHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH----FDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~ 263 (1450)
....++.|+|.+|+|||++|.+++........ -..++|++..+.++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 35689999999999999999999753222221 3578999988877765443
No 207
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.0085 Score=64.83 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
...+.++|.+|+|||+||.++++.. ...-..+++++ ..++...+-..... ....... +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 3478899999999999999999843 22223445553 33444444333211 1112222 223344
Q ss_pred CcEEEEEeCCCCCChhhHHh--hhccccC-CCCCcEEEEecCc
Q 037733 295 KKFLLVLDDVWNENYNYWVE--FSRPFEA-GAQGSKIIVTTRN 334 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtr~ 334 (1450)
+.=+|||||+.......|.. +...+.. ....-.+||||..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34488999997765566664 2222211 1223347777764
No 208
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.61 E-value=0.0092 Score=67.54 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCc-EEEEEeCCcc-CHHHHHHHHHHHhhcC
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDL-KTWTCVSDDF-DVIRLTKAILTSIVAG 273 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~ 273 (1450)
-..++++.+..- ++...+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+.. .+.++.+.+...+...
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345577777543 2335679999999999999999987321 122234 4676776554 6788888887766654
Q ss_pred CCCCCCCH----HHHHHHHHHHh--CCCcEEEEEeCC
Q 037733 274 QNVDNHDL----NKLQVELNKQL--SGKKFLLVLDDV 304 (1450)
Q Consensus 274 ~~~~~~~~----~~~~~~l~~~l--~~kr~LlVlDdv 304 (1450)
........ ......+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 32111111 11111222222 589999999999
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.61 E-value=0.0021 Score=72.27 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=42.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+++|.++.++++++++.......+.+-+++.++|++|+||||||+.+++.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999997654322345689999999999999999999874
No 210
>PRK06526 transposase; Provisional
Probab=96.56 E-value=0.0041 Score=68.04 Aligned_cols=100 Identities=24% Similarity=0.221 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.-+.++|++|+|||+||.++.+... +..+. +.|+ +..++..++..... ... ....+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~------~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH------AGR---LQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh------cCc---HHHHHHHh--cc
Confidence 4588999999999999999987432 22222 3332 23344444433211 111 12223222 23
Q ss_pred cEEEEEeCCCCCChhhHH-h-hhccccC-CCCCcEEEEecCch
Q 037733 296 KFLLVLDDVWNENYNYWV-E-FSRPFEA-GAQGSKIIVTTRNH 335 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~-~-~~~~l~~-~~~gs~ilvTtr~~ 335 (1450)
.-+||+||+.......|. . +...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654322222 2 2222211 12344 88888864
No 211
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.55 E-value=0.0021 Score=64.29 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeecc
Q 037733 1285 CAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGIS 1364 (1450)
Q Consensus 1285 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 1364 (1450)
..+...+||++|.+... ..|..++.|.+|.+++|. +..+-+.+ ...+++|+.|.|.
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNr--------------It~I~p~L--------~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNR--------------ITRIDPDL--------DTFLPNLKTLILT 96 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCc--------------ceeeccch--------hhhccccceEEec
Confidence 35778889998887653 347788888888888883 22222222 1345678888888
Q ss_pred ccCCCcccc--ccCCCCCCCCeeeccCCCCCCCCCC----CCCccccccccccCChhhHH
Q 037733 1365 RFPNLERLS--SSIVDLQNLTELIIEDCPKLKYFPE----KGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1365 ~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
+|.+.. +. .-+..||.|++|.+-+|+....-.- ....++|+.||+.+=...+.
T Consensus 97 nNsi~~-l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 97 NNSIQE-LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred Ccchhh-hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence 887443 22 2367778888888888874433211 13467888888887665444
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.0062 Score=67.17 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.|+|++|+|||+||.++++... ...+ .+.++. ..++...+...... .. +...+.+.+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~------~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ------GR---YKTTLQRGV-MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC------Cc---HHHHHHHHh-cC
Confidence 4677999999999999999976322 2222 233433 22333333222111 11 122222222 34
Q ss_pred cEEEEEeCCCCCChhhHH--hhhccccC-CCCCcEEEEecCch
Q 037733 296 KFLLVLDDVWNENYNYWV--EFSRPFEA-GAQGSKIIVTTRNH 335 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~ilvTtr~~ 335 (1450)
.-++|+||+.......+. .+...+.. ...++ +||||...
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 569999999754333332 22222221 12344 88888753
No 213
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.037 Score=60.84 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=97.9
Q ss_pred ceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
++=|-++.+++|.+...-+-. -+-..++=|.++|++|.|||-||++|++ +....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc------
Confidence 355788888888887743211 0223467788999999999999999999 444433 33332
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCC--------------hhhHHhhhccccCC--CC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQL-SGKKFLLVLDDVWNEN--------------YNYWVEFSRPFEAG--AQ 324 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------------~~~~~~~~~~l~~~--~~ 324 (1450)
.++.+...+.. ..+...+.+.- ...+..|.+|.++... +...-++...+... ..
T Consensus 219 --SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 --SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred --HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 12222222211 12333333333 3567889999885421 11122233333221 34
Q ss_pred CcEEEEecCchHHHHh--c--C-CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh----HHHHHHHh
Q 037733 325 GSKIIVTTRNHEVAEI--M--G-TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP----LAAQTLGG 395 (1450)
Q Consensus 325 gs~ilvTtr~~~v~~~--~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P----Lai~~~~~ 395 (1450)
.-|||..|...++... + | -...+++..-+.+.=.++|.-|+-.=.-...--.+.+++.|.|.- -|+.+=|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHh
Confidence 5689988876555422 1 2 234567764444444677766653211000111334555565543 34444455
Q ss_pred hhc
Q 037733 396 LLR 398 (1450)
Q Consensus 396 ~L~ 398 (1450)
+++
T Consensus 370 m~A 372 (406)
T COG1222 370 MFA 372 (406)
T ss_pred HHH
Confidence 543
No 214
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.51 E-value=0.0092 Score=65.00 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=35.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1450)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35689999999999999999999874 32334678899887 5555443
No 215
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.51 E-value=0.024 Score=58.84 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=94.4
Q ss_pred cceecchhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQ---VIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
.++||.++.+.+ |++.|..++.=++-.++-|..+|++|.|||.+|+++++...+ .| +-|. ..++..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vk------at~liG 189 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVK------ATELIG 189 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEec------hHHHHH
Confidence 568898877654 666665543324456788999999999999999999995322 22 1111 111111
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh------------hhHHhhhccccC--CCCCcEEEE
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY------------NYWVEFSRPFEA--GAQGSKIIV 330 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~~~~~~~~~l~~--~~~gs~ilv 330 (1450)
+.++. ....+.+...+.-+.-++.+.+|.++.... +...++...+.. .+.|...|-
T Consensus 190 ---ehVGd-------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 190 ---EHVGD-------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred ---HHhhh-------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11110 111122222223345689999998754210 111222222221 344655566
Q ss_pred ecCchHHHHh-cC--CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC
Q 037733 331 TTRNHEVAEI-MG--TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 331 Ttr~~~v~~~-~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~ 386 (1450)
.|...++... .. -...++...-+++|-.+++..++-.-.-..+.-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence 6665544322 11 12346666677888888887776321111122255566666664
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.50 E-value=0.0032 Score=64.92 Aligned_cols=100 Identities=21% Similarity=0.310 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.-+.++|.+|+|||.||.++.+.. ....+ .+.|+.+ .+++..+ .... ........ +. .+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l----~~~~--~~~~~~~~---~~-~l~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDEL----KQSR--SDGSYEEL---LK-RLK-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHH----HCCH--CCTTHCHH---HH-HHH-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccc----cccc--cccchhhh---cC-ccc-c
Confidence 568999999999999999998843 22233 3556553 3344443 2221 11122222 22 222 2
Q ss_pred cEEEEEeCCCCCChhhHHh--hhccccC-CCCCcEEEEecCch
Q 037733 296 KFLLVLDDVWNENYNYWVE--FSRPFEA-GAQGSKIIVTTRNH 335 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtr~~ 335 (1450)
-=||||||+.......|.. +...+.. ..++ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3578899997765455543 1111111 1223 588888753
No 217
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.49 E-value=0.0012 Score=82.49 Aligned_cols=63 Identities=17% Similarity=0.062 Sum_probs=27.6
Q ss_pred hcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCcc-chhcccCCCCCCCceecccCC
Q 037733 1185 RLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLE-SIAERLDNNTSLEKIDTSDCE 1249 (1450)
Q Consensus 1185 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~ 1249 (1450)
...++|+|..||+|++++... .+++++++|+.|.+.+=.+.. ..-..+.++++|+.||+|..+
T Consensus 168 lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 334445555555555544422 344455555555544433321 111123344555555555433
No 218
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.48 E-value=0.013 Score=76.42 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=77.2
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.++.. ....-...+.+..+.-.+.. .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~-~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKH-S-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccc-h--
Confidence 4689999999999999875321 01122457889999999999999999873 21111233344444322211 1
Q ss_pred HHHHHhhcCCCC--CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEe
Q 037733 265 AILTSIVAGQNV--DNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVT 331 (1450)
Q Consensus 265 ~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvT 331 (1450)
...+.+.... .......+...++ +....+|+||++...+...+..+...+..+. ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1112111110 1111122222222 1233489999998888788887777664321 23447777
Q ss_pred cCc
Q 037733 332 TRN 334 (1450)
Q Consensus 332 tr~ 334 (1450)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 775
No 219
>PRK06921 hypothetical protein; Provisional
Probab=96.45 E-value=0.011 Score=65.51 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccccc-CCcEEEEEe
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDH-FDLKTWTCV 253 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 253 (1450)
...+.++|..|+|||+||.++++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457899999999999999999984 3322 234566664
No 220
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.45 E-value=0.0098 Score=76.95 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred CcceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
...++|.+..++.+.+.+..... ..+....++.++|+.|+|||.+|++++.. .-+.....+-+.++. ..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse------~~ 636 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSE------FQ 636 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHH------hh
Confidence 35689999999999998854211 01223457899999999999999998763 211112222222221 11
Q ss_pred H-HHHHHhhcCCCC--CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEE
Q 037733 264 K-AILTSIVAGQNV--DNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKII 329 (1450)
Q Consensus 264 ~-~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~il 329 (1450)
. .-...+.+.... .......+...++ +...-+|+||++...+...++.+...+..+. ..+-||
T Consensus 637 ~~~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 637 EAHTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhhhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 1 111122221110 1111112233333 2455699999998777777777766554432 455677
Q ss_pred EecCc
Q 037733 330 VTTRN 334 (1450)
Q Consensus 330 vTtr~ 334 (1450)
+||..
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 77765
No 221
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.43 E-value=0.088 Score=60.33 Aligned_cols=195 Identities=14% Similarity=0.118 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhccccccccCCcEEEEEeCCcc---CHHHHHHHHHH
Q 037733 193 REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLA-RHVYNDDRVQDHFDLKTWTCVSDDF---DVIRLTKAILT 268 (1450)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~~ 268 (1450)
|.+..++|..||.+... ..|.|.||-|+||+.|+ .++.++.+. +..+.+.+-. +-..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 66788999999976532 69999999999999999 777764222 4444432211 22233333333
Q ss_pred Hhh-----------------------cCCCCCCCCHH-HHHHH-------HHHH-------------------h---CCC
Q 037733 269 SIV-----------------------AGQNVDNHDLN-KLQVE-------LNKQ-------------------L---SGK 295 (1450)
Q Consensus 269 ~l~-----------------------~~~~~~~~~~~-~~~~~-------l~~~-------------------l---~~k 295 (1450)
+++ +....-..+.+ ++.+. |++. + -.+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 332 22211111211 11111 1110 0 123
Q ss_pred cEEEEEeCCCCCC---------hhhHHhhhccccCCCCCcEEEEecCchHHHH----hcC--CCCceeCCCCCHHHHHHH
Q 037733 296 KFLLVLDDVWNEN---------YNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE----IMG--TVPPHPLKELSDNDCLAI 360 (1450)
Q Consensus 296 r~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~----~~~--~~~~~~l~~L~~~~~~~l 360 (1450)
|-+||+|+.-... ..+|..... ..+=.+||++|-+..... .+. ..+.+.|...+++-|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6799999985432 123444221 234557999887754433 332 335678999999999999
Q ss_pred HHhccCCCC---------------------chhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCH
Q 037733 361 FAQHSLGPR---------------------ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDR 403 (1450)
Q Consensus 361 f~~~~~~~~---------------------~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~ 403 (1450)
...+..... ....+.....++..||=-.-+..+++.++....+
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 887764320 0234455677888999999999999999886553
No 222
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.42 E-value=0.007 Score=63.02 Aligned_cols=133 Identities=21% Similarity=0.193 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc--cCH----HH----
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD--FDV----IR---- 261 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~----~~---- 261 (1450)
.+..+....++.|.. ..++.+.|++|.|||.||.+.+-+.-..++|+.++++.-.-+ .++ -.
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666777777763 258999999999999999998876545578888877642211 110 00
Q ss_pred ---HHHHHHHHhhcCCCCCCCCHHHHHHHH------HHHhCCC---cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 037733 262 ---LTKAILTSIVAGQNVDNHDLNKLQVEL------NKQLSGK---KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKII 329 (1450)
Q Consensus 262 ---~~~~i~~~l~~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 329 (1450)
...-+...+..-. .....+.+.+.- -..++++ ...||+|++.+....++..+... .+.|||||
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 0111111111100 111222211100 1123443 46999999988777777766544 36799999
Q ss_pred EecCchHH
Q 037733 330 VTTRNHEV 337 (1450)
Q Consensus 330 vTtr~~~v 337 (1450)
++--..++
T Consensus 151 ~~GD~~Q~ 158 (205)
T PF02562_consen 151 ITGDPSQI 158 (205)
T ss_dssp EEE-----
T ss_pred EecCceee
Confidence 98765433
No 223
>PRK07261 topology modulation protein; Provisional
Probab=96.40 E-value=0.0086 Score=61.60 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccc-cccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRV-QDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.|.|+|++|+||||||+.+...... .-+.|...|-... ...+.++....+...+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 4789999999999999999863211 1234555552211 1123344555556666666
Q ss_pred cEEEEEeCCCC
Q 037733 296 KFLLVLDDVWN 306 (1450)
Q Consensus 296 r~LlVlDdv~~ 306 (1450)
+ .|+|+...
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 6 57788744
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.37 E-value=0.0088 Score=64.33 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
+...++.|+|++|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998873 333346789999876 55555443
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.028 Score=63.79 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=48.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC--HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD--VIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
+.++|+++|++|+||||++..++.... ...+ .+..+... ++. ..+-++...+.++.+.. ...+...+.+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 458999999999999999999986322 2222 34444432 332 22222233333332211 234556666655544
Q ss_pred hCC-CcEEEEEeCCCC
Q 037733 292 LSG-KKFLLVLDDVWN 306 (1450)
Q Consensus 292 l~~-kr~LlVlDdv~~ 306 (1450)
-.. +.=+|++|-.-.
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 321 234778887744
No 226
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.32 E-value=0.025 Score=73.04 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=94.6
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|.+..++++.+.+.-.-. .+-...+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4577888888877776642100 01123455789999999999999999984 22222 222211
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------h----hhHHhhhccccC--CCCCc
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN--------Y----NYWVEFSRPFEA--GAQGS 326 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~~~~~l~~--~~~gs 326 (1450)
+++.... ......+...+...-+..+.+|++|+++.-. . .....+...+.. ...+.
T Consensus 522 ----~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1111111 1112233344444445678999999985310 0 011222222222 12344
Q ss_pred EEEEecCchHHHH-hc----CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 327 KIIVTTRNHEVAE-IM----GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 327 ~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
-||.||...+... .+ .-...+.+...+.++-.++|..+..+..-........+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 5666776544321 11 1235678888888888888876543221111112455667777754
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.038 Score=63.00 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch-HHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCCCch
Q 037733 294 GKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH-EVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGPREL 371 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1450)
+++-++|+|++..-+...-..+...+.....++.+|++|.+. .+...+ .....+.+.+++.+++.+.+..... ..
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~~- 188 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV--AE- 188 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC--Cc-
Confidence 344455678887766555556655554433456666677664 343322 2236789999999999888865421 11
Q ss_pred hHHHHHHHHHHhCCChHH
Q 037733 372 LDEIGKKLVSKCGGLPLA 389 (1450)
Q Consensus 372 ~~~~~~~i~~~~~G~PLa 389 (1450)
.. ..+..++|-|+.
T Consensus 189 -~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 189 -PE---ERLAFHSGAPLF 202 (325)
T ss_pred -HH---HHHHHhCCChhh
Confidence 11 113568898864
No 228
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.30 E-value=0.008 Score=61.22 Aligned_cols=133 Identities=19% Similarity=0.152 Sum_probs=65.4
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHH
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTS 269 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1450)
+||....+.++++.+..... .. .-|.|+|..|+||+.+|+.+.+.. ...-...+-|+++. .+...+-.++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888887765422 22 345699999999999999999832 11112233444443 2333333333322
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccC------C-----CCCcEEEEecCch
Q 037733 270 IVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEA------G-----AQGSKIIVTTRNH 335 (1450)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~------~-----~~gs~ilvTtr~~ 335 (1450)
..+.......... -.+.. ...=-|+||+|..-.......+...+.. + ....|||.||...
T Consensus 74 ~~~~~~~~~~~~~---G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKK---GLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBE---HHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccC---Cceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1111000000000 11111 1233678999977655444444433321 1 1256888888753
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.014 Score=72.23 Aligned_cols=135 Identities=17% Similarity=0.273 Sum_probs=82.1
Q ss_pred CcceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC---CcEEEEEeCCccCHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF---DLKTWTCVSDDFDVI 260 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~ 260 (1450)
...++|-+..++.+.+.+..... .......+...+|+.|||||-||++++.. -| +..+-+..|
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMS------ 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMS------ 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechH------
Confidence 35699999999999998865432 12234567888999999999999999872 23 223333332
Q ss_pred HHHH-HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHHhhhccccCC----C-------CCcE
Q 037733 261 RLTK-AILTSIVAGQNVDNHDLNKLQVELNKQLSGKKF-LLVLDDVWNENYNYWVEFSRPFEAG----A-------QGSK 327 (1450)
Q Consensus 261 ~~~~-~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~----~-------~gs~ 327 (1450)
+.+. .-...+.+..+. --..++ --.|-+..+.++| +|.||.|...+.+-++-+.+.|..+ + +.+-
T Consensus 559 Ey~EkHsVSrLIGaPPG-YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNti 636 (786)
T COG0542 559 EYMEKHSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTI 636 (786)
T ss_pred HHHHHHHHHHHhCCCCC-Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeE
Confidence 2222 122333332221 111111 2234556677877 8889999888888787777776543 2 2345
Q ss_pred EEEecCc
Q 037733 328 IIVTTRN 334 (1450)
Q Consensus 328 ilvTtr~ 334 (1450)
||+||.-
T Consensus 637 IImTSN~ 643 (786)
T COG0542 637 IIMTSNA 643 (786)
T ss_pred EEEeccc
Confidence 6667754
No 230
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.27 E-value=0.017 Score=74.41 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=69.1
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|-+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. . +...+.+..++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 5688988888888888864211 01123456889999999999999999873 2 23344555443221111
Q ss_pred HHHHHhhcCCC-CCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCChhhHHhhhccccC
Q 037733 265 AILTSIVAGQN-VDNHDLNKLQVELNKQLSG-KKFLLVLDDVWNENYNYWVEFSRPFEA 321 (1450)
Q Consensus 265 ~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~l~~ 321 (1450)
+..-++.... ........+ .+.++. ..-+++||+++..+.+.+..+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111111111 011111222 233333 345999999988877777777666543
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.24 E-value=0.01 Score=64.44 Aligned_cols=101 Identities=19% Similarity=0.090 Sum_probs=56.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.++|.+|+|||+||.++++.. ......++++++. ++...+-..... ...... +.+.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHHH----HHHHh-cC
Confidence 578899999999999999999843 3333345666543 344444333221 111122 22222 34
Q ss_pred cEEEEEeCCCCCChhhHHh--hhccccCC-CCCcEEEEecCc
Q 037733 296 KFLLVLDDVWNENYNYWVE--FSRPFEAG-AQGSKIIVTTRN 334 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtr~ 334 (1450)
--||||||+.......|.. +...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999996554344543 22222221 122336777764
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.013 Score=72.38 Aligned_cols=152 Identities=22% Similarity=0.300 Sum_probs=84.2
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC-----CcEEEEEeCCccCHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF-----DLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 262 (1450)
.+++||++|++++++.|..... .++ .++|.+|||||++|.-++... +.+.- +..++. . |
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NNP---vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-L----D---- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NNP---VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-L----D---- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CCC---eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-e----c----
Confidence 4589999999999999977532 222 378999999999988877631 11111 111111 0 1
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCC---------hhhHHhhhccccCCCCCcEEEE-e
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQL-SGKKFLLVLDDVWNEN---------YNYWVEFSRPFEAGAQGSKIIV-T 331 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilv-T 331 (1450)
+ ..+..+.. -..+.++..+.+.+.+ +.+++.|.+|.+...- .+.-.-+...+. .+. -++|- |
T Consensus 234 ---~-g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGe-L~~IGAT 306 (786)
T COG0542 234 ---L-GSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGE-LRCIGAT 306 (786)
T ss_pred ---H-HHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCC-eEEEEec
Confidence 1 11222222 2234444444444444 4558999999985420 111122222222 222 24444 5
Q ss_pred cCchHHHHhc-------CCCCceeCCCCCHHHHHHHHHh
Q 037733 332 TRNHEVAEIM-------GTVPPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 332 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~ 363 (1450)
|-+ +.-+.+ ...+.+.++.-+.+++..++..
T Consensus 307 T~~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 307 TLD-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred cHH-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 543 222111 2347788999999999998854
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.23 E-value=0.023 Score=73.46 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=92.9
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|.++.++++.+++...-. -+-...+-+.++|++|+||||+|+++++. ....| +.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 3478999999998887742100 01123456889999999999999999983 32222 222211
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHHhhhccccCC-CCCcEE
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-----------NYWVEFSRPFEAG-AQGSKI 328 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l~~~-~~gs~i 328 (1450)
++. ... .......+...+.......+.+|++|+++.... .....+...+... ..+..+
T Consensus 247 ~i~----~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EIM----SKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HHh----ccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 000 011122333344444456678999999854210 0112222222211 223334
Q ss_pred EE-ecCchH-HHHhcC----CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChH
Q 037733 329 IV-TTRNHE-VAEIMG----TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 329 lv-Ttr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PL 388 (1450)
+| ||.... +...+. -...+.+...+.++-.+++..+.-...-........+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 44 554432 211111 1245677778888888888754322111112235667888888653
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.22 E-value=0.021 Score=70.11 Aligned_cols=43 Identities=35% Similarity=0.349 Sum_probs=35.3
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998877443 224567999999999999999976
No 235
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.18 E-value=0.021 Score=68.47 Aligned_cols=179 Identities=16% Similarity=0.060 Sum_probs=89.8
Q ss_pred cceecchhHHHHHHHHHhc---C-CCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLR---D-DLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
.++.|.+..++.+.+.... . ..-+-...+-|.++|++|+|||.+|+++++. ....| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H--
Confidence 3567877666555543211 0 0001123567889999999999999999983 22222 111111 1
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hh-h----HHhhhccccCCCCCcEEEEe
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-------YN-Y----WVEFSRPFEAGAQGSKIIVT 331 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~-~----~~~~~~~l~~~~~gs~ilvT 331 (1450)
+..... ..+...+.+.+...-...+++|++|+++..- .. . ...+...+.....+.-||.|
T Consensus 295 --l~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111110 1112223333333334578999999995310 00 0 11122222222334446667
Q ss_pred cCchHH-HHhc----CCCCceeCCCCCHHHHHHHHHhccCCCCc--hhHHHHHHHHHHhCCCh
Q 037733 332 TRNHEV-AEIM----GTVPPHPLKELSDNDCLAIFAQHSLGPRE--LLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 332 tr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~i~~~~~G~P 387 (1450)
|...+- ...+ .-...+.++.-+.++-.++|..+...... ........+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 765432 1111 22356788888888888888776533211 11223456666666653
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.0076 Score=68.47 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.-+.++|.+|+|||.||.++++... ... ..++++++. ++...+...-. . ...+... .+ +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g-~~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~---~~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRG-KSVIYRTAD------ELIEILREIRF-N---NDKELEE---VY-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCC-CeEEEEEHH------HHHHHHHHHHh-c---cchhHHH---HH-HHhc-c
Confidence 5689999999999999999998432 222 245666542 23333322111 1 1111111 12 2222 2
Q ss_pred cEEEEEeCCCCCChhhHHh--hhccccC-CCCCcEEEEecCc
Q 037733 296 KFLLVLDDVWNENYNYWVE--FSRPFEA-GAQGSKIIVTTRN 334 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtr~ 334 (1450)
-=||||||+..+....|.. +...+.. ...+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2489999996654344432 2222221 1234568888875
No 237
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.17 E-value=0.01 Score=55.56 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 238
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.051 Score=63.59 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=64.8
Q ss_pred cceecchhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLR------NDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.++=|.++.+.++.+++..-..+ +-...+-|.++|++|+|||.||++++++. .-. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch-----
Confidence 34668888888888877542211 11235668899999999999999999843 222 3333322
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
+|+..+ ...+.+.+.+.+.+....-++++++|+++-
T Consensus 258 ---eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233333 233455666666777788899999999965
No 239
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.13 E-value=0.022 Score=55.77 Aligned_cols=123 Identities=19% Similarity=0.109 Sum_probs=51.4
Q ss_pred hcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCcc
Q 037733 1185 RLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQL 1264 (1450)
Q Consensus 1185 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 1264 (1450)
.|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...+.++++|+.+.+.+ .........+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455666777777653 333333455666667777777653 3333334566666677777754 2222223455567777
Q ss_pred ceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCc
Q 037733 1265 REIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQ 1313 (1450)
Q Consensus 1265 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 1313 (1450)
+.+.+..+ +...-...+.++ +|+.+.+.. .+.......|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777554 333333344454 677776654 22332334555555553
No 240
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.03 Score=65.21 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=84.6
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc-------------------cCCcEE
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD-------------------HFDLKT 249 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 249 (1450)
+++|-+....++..+..... .....+.++|++|+||||+|.++++..--.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 36777888888888886432 1233589999999999999999987421111 112333
Q ss_pred EEEeCCccC---HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCc
Q 037733 250 WTCVSDDFD---VIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGS 326 (1450)
Q Consensus 250 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 326 (1450)
.+..++... ..+..+++.+...... ..++.-++++|+++..+.+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 444443333 2222333332222111 03567899999998876666666666666566777
Q ss_pred EEEEecCch-HHHHhc-CCCCceeCCCCCHH
Q 037733 327 KIIVTTRNH-EVAEIM-GTVPPHPLKELSDN 355 (1450)
Q Consensus 327 ~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~ 355 (1450)
++|++|... .+...+ .....+++.+.+..
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 888877743 332212 22245666663333
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=96.12 E-value=0.081 Score=67.20 Aligned_cols=154 Identities=13% Similarity=0.060 Sum_probs=95.8
Q ss_pred CCCCcHHHHHHHHhccccccccC-CcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEE
Q 037733 223 MGGLGKTTLARHVYNDDRVQDHF-DLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVL 301 (1450)
Q Consensus 223 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 301 (1450)
|.++||||+|.+++++. ....+ ..++-+++++...... .++++......... -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~---------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI---------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc---------------CCCCCEEEEE
Confidence 77899999999999842 12222 2355567766444443 33333333211110 0124579999
Q ss_pred eCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHHHhc-CCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHH
Q 037733 302 DDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVAEIM-GTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKK 378 (1450)
Q Consensus 302 Ddv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~ 378 (1450)
|+++..+......+...+......+++|++|.+ ..+.... .....+++.+++.++....+...+... ....++....
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~ 716 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQA 716 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999988777888887777654556676665554 3333222 233679999999998887776544221 1223668889
Q ss_pred HHHHhCCChHHHHHH
Q 037733 379 LVSKCGGLPLAAQTL 393 (1450)
Q Consensus 379 i~~~~~G~PLai~~~ 393 (1450)
|++.++|.+-.+..+
T Consensus 717 Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 717 ILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999988554433
No 242
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.12 E-value=0.022 Score=74.18 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=76.0
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|-+..++.+...+..... ..+....++.++|+.|+|||+||+.+++. .-..-...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 5689999999999888863211 01122356678999999999999999872 21111223333333221111111
Q ss_pred HHHHHhhcCC-CCCCCCHHHHHHHHHHHhCCCc-EEEEEeCCCCCChhhHHhhhccccCC-----------CCCcEEEEe
Q 037733 265 AILTSIVAGQ-NVDNHDLNKLQVELNKQLSGKK-FLLVLDDVWNENYNYWVEFSRPFEAG-----------AQGSKIIVT 331 (1450)
Q Consensus 265 ~i~~~l~~~~-~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvT 331 (1450)
.-++.+. ......... +.+.++.++ .+++||++...+...+..+...+..+ -..+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1111111 001111122 334444444 58999999888777787777666542 134556777
Q ss_pred cCc
Q 037733 332 TRN 334 (1450)
Q Consensus 332 tr~ 334 (1450)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 765
No 243
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.09 E-value=0.0026 Score=66.70 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=39.8
Q ss_pred CCCCCCCceecccCCCcccccccccCCCccceEeeccC--CCccccCCCCCCCCCcceEeeccCCCccc-CcccccCCCC
Q 037733 1235 DNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRC--GNLVSFPEGGLPCAKLTRLEISYCKRLQA-LPKGLHNLTS 1311 (1450)
Q Consensus 1235 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~ 1311 (1450)
.....|+.|++.++.++.. ..+..+++|+.|.++.| .....++.-...+++|++|++++|++... .-..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3344555665555554332 23445556666666666 33333333333345666666666554421 0012334444
Q ss_pred CceEEEeCC
Q 037733 1312 LQELRIIGD 1320 (1450)
Q Consensus 1312 L~~L~l~~n 1320 (1450)
|..|++.+|
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 555555444
No 244
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.07 E-value=0.038 Score=60.30 Aligned_cols=90 Identities=18% Similarity=0.091 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccC------CcEEEEEeCCccCHHHHHHHHHHHhhcCCC--------CCC
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF------DLKTWTCVSDDFDVIRLTKAILTSIVAGQN--------VDN 278 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~ 278 (1450)
....++.|+|.+|+|||++|.+++... ...- ..++|+.....++..++. ++......... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 356799999999999999999987632 2222 467899888777765543 33333211100 022
Q ss_pred CCHHHHHHHHHHHhC----CCcEEEEEeCCC
Q 037733 279 HDLNKLQVELNKQLS----GKKFLLVLDDVW 305 (1450)
Q Consensus 279 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~ 305 (1450)
.+.+++...+..... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344555555544432 344588888874
No 245
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0033 Score=65.95 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=46.4
Q ss_pred CCCCcEEEEccCCCccchhcccCCCCCCCceecccC--CCcccccccccCCCccceEeeccCCCccccCCC---CCCCCC
Q 037733 1213 LRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDC--ENLKILPSGLHNLHQLREIILFRCGNLVSFPEG---GLPCAK 1287 (1450)
Q Consensus 1213 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~ 1287 (1450)
+..|+.|++.++.++.. ..+..+++|+.|.++.| +....++.....+|+|++|++++|.+.- +.. +..+.+
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 33444444444443321 12334455555555555 3333333333444666666666665431 111 222445
Q ss_pred cceEeeccCCCcccCc---ccccCCCCCceEE
Q 037733 1288 LTRLEISYCKRLQALP---KGLHNLTSLQELR 1316 (1450)
Q Consensus 1288 L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~ 1316 (1450)
|..|++.+|..+.... ..|.-+++|++|+
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6666666665544211 1344556666554
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.06 E-value=0.019 Score=58.93 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD 258 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 258 (1450)
++.|+|.+|+||||+|..++... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999998732 22334577777765543
No 247
>PRK04296 thymidine kinase; Provisional
Probab=96.05 E-value=0.012 Score=61.65 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHhCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV-DNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 294 (1450)
.++.|+|..|.||||+|..++. +...+-..++.+. ..++.+.....++.+++..... ......++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999999887 3333333333332 1112222233344444321110 12234445555544 333
Q ss_pred CcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH
Q 037733 295 KKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE 336 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~ 336 (1450)
+.-+||+|.+.--+.++..++...+. ..|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45589999995432222233333322 45788999998853
No 248
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.03 Score=66.54 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=79.9
Q ss_pred eecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHH
Q 037733 190 VYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1450)
+=|-|+-+.++.+...-+-. -+-...+-|..+|+||.|||++|+++++. -+..| +.+..+
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp------ 502 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP------ 502 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH------
Confidence 44566666665544432110 02245678899999999999999999983 33333 333321
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHHhhhccccCCCCCcEEEE-
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-----------NYWVEFSRPFEAGAQGSKIIV- 330 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l~~~~~gs~ilv- 330 (1450)
+++.... ..+...+.+.+++.-+--+.+|.||.++.... .....+...+........|+|
T Consensus 503 --EL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 503 --ELFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred --HHHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 1111111 11223333444444444567888887744210 112222233332222333433
Q ss_pred --ecCchHHHHhc-C---CCCceeCCCCCHHHHHHHHHhccCC
Q 037733 331 --TTRNHEVAEIM-G---TVPPHPLKELSDNDCLAIFAQHSLG 367 (1450)
Q Consensus 331 --Ttr~~~v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1450)
|-|...+-..+ . ..+.+.++.-+.+.-.++|+.++-.
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 44444443322 2 2355666666666678899887743
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.97 E-value=0.005 Score=59.49 Aligned_cols=21 Identities=43% Similarity=0.600 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
||.|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 250
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.94 E-value=0.013 Score=74.20 Aligned_cols=120 Identities=11% Similarity=0.129 Sum_probs=67.6
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|-++.++.+.+.+..... ........+.++|++|+|||++|+.++.. ... ..+.+.++.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----
Confidence 4588999999999888864211 01122457889999999999999999873 222 23334443221111
Q ss_pred HHHHHhhcCCCCC-CCCHHHHHHHHHHHhC-CCcEEEEEeCCCCCChhhHHhhhcccc
Q 037733 265 AILTSIVAGQNVD-NHDLNKLQVELNKQLS-GKKFLLVLDDVWNENYNYWVEFSRPFE 320 (1450)
Q Consensus 265 ~i~~~l~~~~~~~-~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~l~ 320 (1450)
-...+.+..... ..+.. ..+.+.++ ....+|+||++...+.+.+..+...+.
T Consensus 529 -~~~~LiG~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 -TVSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -cHHHHcCCCCCccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 112222211100 00111 11222232 334699999998877777777766554
No 251
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.92 E-value=0.12 Score=53.56 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=64.7
Q ss_pred CCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 185 VNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
++-..++|-|..++.+++--..-- .+-.-.-|.+||.-|.|||+|++++.+ .+.+..-. -|.|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------
Confidence 344578999988888776443211 111234577999999999999999998 44443322 2233211
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccC
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEA 321 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~ 321 (1450)
+..++..+...++. ..+||.|..||..-+ ....+..+...+..
T Consensus 123 ------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11112222222322 467999999999543 34566777766654
No 252
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.019 Score=59.69 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEE
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWT 251 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 251 (1450)
+..+|.++|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999998 455455555555
No 253
>PRK06696 uridine kinase; Validated
Probab=95.90 E-value=0.0099 Score=64.44 Aligned_cols=43 Identities=28% Similarity=0.231 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|++-+++|.+.+... ..+...+|+|.|.+|+||||+|+.++.
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3677788888888764 234678999999999999999999987
No 254
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.87 E-value=0.028 Score=58.99 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC-ccCHHHHHHHHHHHhhcCCC--CCCCCHHHHH-HHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD-DFDVIRLTKAILTSIVAGQN--VDNHDLNKLQ-VELNK 290 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~-~~l~~ 290 (1450)
++|+.++|+.|+||||.+..++... +.+=..+..++... .....+-++..++.++.+.. ....+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999999888887633 32333466666542 22455666777777765421 1222333333 33433
Q ss_pred HhCCCcEEEEEeCCC
Q 037733 291 QLSGKKFLLVLDDVW 305 (1450)
Q Consensus 291 ~l~~kr~LlVlDdv~ 305 (1450)
.-..+.=+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322233477888664
No 255
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.0035 Score=38.98 Aligned_cols=21 Identities=38% Similarity=0.784 Sum_probs=12.0
Q ss_pred ccceeeccCCCcccccccccc
Q 037733 620 YLRYLNLSGTGIRTLPESVNK 640 (1450)
Q Consensus 620 ~Lr~L~L~~~~i~~LP~~i~~ 640 (1450)
+||+|||++|.|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655443
No 256
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.86 E-value=0.016 Score=63.69 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=40.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccc----CCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDH----FDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
...+.=|+|.+|+|||.||.+++-....... =..++|++....|+..++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4568999999999999999888753332221 2458999999999887765 455543
No 257
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.11 Score=64.02 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=100.2
Q ss_pred cceecchh---HHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREI---EKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.++.|-++ |+++++++|..++. .+..-++=+.++|++|.|||-||++++....+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 35778775 45556666654321 12234567889999999999999999985432 24444432
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC---------------hhhHHhhhccccCCCCCc
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN---------------YNYWVEFSRPFEAGAQGS 326 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~~l~~~~~gs 326 (1450)
+..+.+.+.. .....+.+...-...++.|.+|+++... .....++...+.....+.
T Consensus 379 ---EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1122221111 1112222333334567888888874321 122334443333333333
Q ss_pred EEE--EecCchHHHHh--c--C-CCCceeCCCCCHHHHHHHHHhccCCCC--chhHHHHHHHHHHhCCChHHH
Q 037733 327 KII--VTTRNHEVAEI--M--G-TVPPHPLKELSDNDCLAIFAQHSLGPR--ELLDEIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 327 ~il--vTtr~~~v~~~--~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~i~~~~~G~PLai 390 (1450)
.|| -+|+..++... + | -...+.++.-+...-.++|..|+-... .+..+.++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 333 35655554322 1 2 235678888888888899988774432 24455555 888888887443
No 258
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.82 E-value=0.0036 Score=62.23 Aligned_cols=87 Identities=24% Similarity=0.154 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcE
Q 037733 218 VPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKF 297 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~ 297 (1450)
|.++|++|+|||+||+.+++. ... ...-+.++...+..++....--. ........ ..+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~---~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQFEFKD---GPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTTTCEEE----CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-cccccccc---ccccccc-----ccee
Confidence 579999999999999999973 321 23335666666766555322111 00000000 0000001 1789
Q ss_pred EEEEeCCCCCChhhHHhhhcc
Q 037733 298 LLVLDDVWNENYNYWVEFSRP 318 (1450)
Q Consensus 298 LlVlDdv~~~~~~~~~~~~~~ 318 (1450)
++|||++.......+..+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999976554555554433
No 259
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.82 E-value=0.034 Score=60.61 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccC-HHHHHHHHHHHhhcCC------CCCCCCHH---
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFD-VIRLTKAILTSIVAGQ------NVDNHDLN--- 282 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~--- 282 (1450)
+.+-++|+|.+|+||||||+.+++ .++.+|+ .++++-+++... +.++..++...-.... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999998 4544554 455566665543 4555555543211110 00111111
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCC
Q 037733 283 --KLQVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 283 --~~~~~l~~~l---~~kr~LlVlDdv 304 (1450)
.....+.+++ +++.+|+|+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112233333 389999999999
No 260
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.81 E-value=0.074 Score=53.08 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCC----CCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhcC
Q 037733 282 NKLQVELNKQLSGKKFLLVLDDV----WNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMG 342 (1450)
Q Consensus 282 ~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~ 342 (1450)
++....+.+.+-+++-+++=|.- +.+ ..|+-+.-.-.-+..|+.||++|.+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 44455677778888889998853 332 445443222222457999999999998877653
No 261
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.81 E-value=0.034 Score=60.24 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=32.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD 258 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 258 (1450)
....++.|.|.+|+||||+|.+++.. ....=..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35689999999999999999999873 222234577887655543
No 262
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.80 E-value=0.027 Score=67.35 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 212 DGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
.+.-+++.++|++|+||||||.-+++.. .| .++=+++|+.-+...+-..|...+......++
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 3567899999999999999999999743 23 25667888887777776666666544332111
Q ss_pred hCCCcEEEEEeCCCCCC
Q 037733 292 LSGKKFLLVLDDVWNEN 308 (1450)
Q Consensus 292 l~~kr~LlVlDdv~~~~ 308 (1450)
.+++.-+|+|.++...
T Consensus 385 -dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGAP 400 (877)
T ss_pred -CCCcceEEEecccCCc
Confidence 2578889999997754
No 263
>PHA02244 ATPase-like protein
Probab=95.79 E-value=0.064 Score=60.66 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=29.1
Q ss_pred cceecchhHH----HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEK----KQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~----~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|....+ ..+..++... .-|.|+|++|+|||++|+++++.
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 3466654433 4455555332 23678999999999999999973
No 264
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.77 E-value=0.099 Score=56.94 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=91.2
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc-cccccCCcEEEEEeCCccC-----HHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD-RVQDHFDLKTWTCVSDDFD-----VIRL 262 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~-----~~~~ 262 (1450)
.++|-.++..++-.++...-. -+...-|.|+|+.|.|||+|......+. ++..+ ..-|...+... +..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 388999999998888864321 1223467899999999999988877751 22333 33344433332 2333
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC------CCcEEEEEeCCCCCChhh-----HHhhhccccCCCCCcEEEEe
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQLS------GKKFLLVLDDVWNENYNY-----WVEFSRPFEAGAQGSKIIVT 331 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~-----~~~~~~~l~~~~~gs~ilvT 331 (1450)
.+++..++..... ...+..+-...+-..|+ +-++.+|+|.++-.-... +.-+-..-....+-+-|-+|
T Consensus 100 ~rql~~e~~~~~k-~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 100 TRQLALELNRIVK-SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHhhhhe-eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 4444433333221 22222233333333332 345888888775421100 11111111112345567789
Q ss_pred cCchH-------HHHhcCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 332 TRNHE-------VAEIMGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 332 tr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
||-.. |-.++.-..++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 98642 32333333456667778888888877654
No 265
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.76 E-value=0.018 Score=64.71 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCC----CCCCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQ----NVDNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l 288 (1450)
+..+++-|+|++|+||||||.+++.. ....-..++|+...+.++... +.+++... .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~-----a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVY-----AKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHH-----HHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999998763 333345688998877776532 22232110 00223445555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 037733 289 NKQLS-GKKFLLVLDDVW 305 (1450)
Q Consensus 289 ~~~l~-~kr~LlVlDdv~ 305 (1450)
...++ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 345689999973
No 266
>PHA00729 NTP-binding motif containing protein
Probab=95.70 E-value=0.038 Score=58.27 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...|.|+|.+|+||||||..+++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999883
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.029 Score=61.53 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
..-+.++|.+|+|||.||.++.++.- +..+ .+.+++ ..++..++....... .....+.+.+ .
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~---------~~~~~l~~~l-~ 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG---------RLEEKLLREL-K 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC---------chHHHHHHHh-h
Confidence 35688999999999999999999543 3223 345554 345555555544321 1112222222 1
Q ss_pred CcEEEEEeCCCCCChhhHH
Q 037733 295 KKFLLVLDDVWNENYNYWV 313 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~~~~~ 313 (1450)
+-=||||||+-.+....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999776555555
No 268
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.024 Score=58.88 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh-hcCCCCCCCCHHHHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI-VAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
.++.+|+|.|.+|+||||+|+.++. .+.... +.-++-..-+...+ .....+.. ..-....+-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4568999999999999999999998 444331 11122111111000 00000011 111122455677778888888
Q ss_pred hCCCc
Q 037733 292 LSGKK 296 (1450)
Q Consensus 292 l~~kr 296 (1450)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.60 E-value=0.0091 Score=70.65 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=40.0
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+++|.++.+++|++.|......-+.+-+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999432221233557999999999999999999987
No 270
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.60 E-value=0.3 Score=48.04 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHHHHHHHHHHhhhhH
Q 037733 4 IGEAILTASVELLVNKLASEGIRLFARQQQIQADLMKWKKMLVMIKAVLDDAEEKKT-ADQSVKLWLGELQNLAYDVEDL 82 (1450)
Q Consensus 4 ~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~ 82 (1450)
+|+.+.+|++|.+++.|...+..........+.-+++|..+++.|.-++++.+.-.. -+..-+.-++++.+..-+++++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 466677777777777776666666666677889999999999999999999887432 2333377788999999999999
Q ss_pred HHHH
Q 037733 83 MDEF 86 (1450)
Q Consensus 83 ld~~ 86 (1450)
++.+
T Consensus 82 V~k~ 85 (147)
T PF05659_consen 82 VEKC 85 (147)
T ss_pred HHHh
Confidence 9987
No 271
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.59 E-value=0.15 Score=59.30 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 037733 194 EIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD 239 (1450)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1450)
+.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567777776542 2467899999999999999999998743
No 272
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.58 E-value=0.021 Score=64.15 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 288 (1450)
+..+++-|+|++|+||||||.+++.. ....=..++|+...+.++.. .+++++.... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33333567888877766653 2333322110 0223445555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 037733 289 NKQLS-GKKFLLVLDDVW 305 (1450)
Q Consensus 289 ~~~l~-~kr~LlVlDdv~ 305 (1450)
....+ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456699999984
No 273
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.57 E-value=0.012 Score=58.35 Aligned_cols=108 Identities=18% Similarity=0.108 Sum_probs=61.1
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-cccCCcEEEEEeCCccCHHHHHHHHHHH
Q 037733 191 YGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV-QDHFDLKTWTCVSDDFDVIRLTKAILTS 269 (1450)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1450)
||+-..++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|..+ .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-------------
Confidence 5666677777766654211 1245789999999999999999874321 1122110 00000
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCC-CCCcEEEEecCch
Q 037733 270 IVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAG-AQGSKIIVTTRNH 335 (1450)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~ilvTtr~~ 335 (1450)
+ .+.+.+ .+.--|+++|++.-.......+...+... ....|+|.||+..
T Consensus 61 ----------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 ----------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ----------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ----------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0 111111 14445789999877666666666666532 5678999999864
No 274
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.54 E-value=0.1 Score=51.94 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
..+++|+|..|.|||||++.+..-.. .....+|+.... .+.--. .-..-+...-.+.+.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999987421 223333332100 000000 011112223345566666
Q ss_pred CcEEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCchHHHH
Q 037733 295 KKFLLVLDDVWNE-NYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 295 kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 339 (1450)
++-++++|+.-.. +......+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7788999987432 223333343333322 246888888766554
No 275
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.54 E-value=0.33 Score=58.39 Aligned_cols=135 Identities=18% Similarity=0.127 Sum_probs=85.3
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---c---cccCCcEEEEEeCCccCHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR---V---QDHFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~---~~~f~~~~wv~~~~~~~~~~~ 262 (1450)
.+-+||.|..+|-.++...-. ..+..+.+-|.|-+|+|||..+..|.+... - -..|+ .+.++.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 356899999999998865432 124456999999999999999999987432 1 12333 344555555678999
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCC---CChhhHHhhhccccC-CCCCcEEEEec
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWN---ENYNYWVEFSRPFEA-GAQGSKIIVTT 332 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~---~~~~~~~~~~~~l~~-~~~gs~ilvTt 332 (1450)
+..|..++.+..... ....+.+..+. +.+.+++++|.++. ..++. +...|.| ..++||++|.+
T Consensus 475 Y~~I~~~lsg~~~~~----~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdV---lYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 475 YEKIWEALSGERVTW----DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDV---LYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHhcccCcccH----HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHH---HHHHhcCCcCCCCceEEEE
Confidence 999999998765422 22333333333 34568888888733 22222 2222222 35678866544
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.54 E-value=0.044 Score=61.43 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC--HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD--VIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
+.+++.|+|++|+||||++..++.....+..-..+..++.. ++. ..+.+......++.... ...+..++...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D-~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD-TYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC-ccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 46799999999999999999988733222111234555543 222 12222222222222221 233445555555443
Q ss_pred hCCCcEEEEEeCC
Q 037733 292 LSGKKFLLVLDDV 304 (1450)
Q Consensus 292 l~~kr~LlVlDdv 304 (1450)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777754
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.52 E-value=0.12 Score=53.76 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=64.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeC--CccCHHHHHH------HHHHHhhcCCC----CCCCC-H
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVS--DDFDVIRLTK------AILTSIVAGQN----VDNHD-L 281 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~------~i~~~l~~~~~----~~~~~-~ 281 (1450)
..+++|+|..|.|||||++.++... ......+++.-. ...+...... ++++.++.... ...-+ -
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 4689999999999999999998732 223344443211 1112222111 13333332111 01111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCC-CC-CcEEEEecCchHHHH
Q 037733 282 NKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAG-AQ-GSKIIVTTRNHEVAE 339 (1450)
Q Consensus 282 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~ilvTtr~~~v~~ 339 (1450)
+...-.+.+.+...+-++++|+.-.. +......+...+... .. |..||++|.+.+...
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22333456666778889999987432 223333333333321 12 667888888866543
No 278
>PRK09354 recA recombinase A; Provisional
Probab=95.51 E-value=0.026 Score=63.94 Aligned_cols=86 Identities=20% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCC----CCCCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQ----NVDNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l 288 (1450)
+..+++-|+|++|+||||||.+++.. ....=..++|+.....++.. .+++++... .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33334578899988877753 233332211 00223445555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 037733 289 NKQLS-GKKFLLVLDDVW 305 (1450)
Q Consensus 289 ~~~l~-~kr~LlVlDdv~ 305 (1450)
...++ ++.-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 355689999984
No 279
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.51 E-value=0.034 Score=63.29 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccc----ccCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQ----DHFDLKTWTCVSDDFDVIRLTKAILTSIV 271 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1450)
....++-|+|.+|+|||+|+.+++-..... ..-..++|++....|++.++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 356889999999999999999886432221 1124789999999999887655 455543
No 280
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.50 E-value=0.054 Score=58.02 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=73.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC-----ccCHHHHHHHHHHHhhcCCC------CCCCCHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD-----DFDVIRLTKAILTSIVAGQN------VDNHDLNK 283 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 283 (1450)
..++++||..|+||||+|+.+.. ....-...+++...+ .....+...++++.++.... .+...-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999986 222223333333211 11233445556666553321 12222233
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCh-hhHHhhhccccC--CCCCcEEEEecCchHHHHhcCC
Q 037733 284 LQVELNKQLSGKKFLLVLDDVWNENY-NYWVEFSRPFEA--GAQGSKIIVTTRNHEVAEIMGT 343 (1450)
Q Consensus 284 ~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~~~~~l~~--~~~gs~ilvTtr~~~v~~~~~~ 343 (1450)
..-.+.+.+.-++-++|.|..-+... ..-.++...+.. ...|-..+..|.+-.+++.+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 34457788889999999998744311 111222222211 2346778899999888876643
No 281
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.49 E-value=0.037 Score=58.37 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh---
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL--- 292 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--- 292 (1450)
++..|.|++|.||||+++.+... .... ...+.+..........+.+. .+. ...............-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~L~~~----~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKELREK----TGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHHHHHH----HTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHHHHHh----hCc----chhhHHHHHhcCCcccccc
Confidence 57889999999999999998763 2222 22333333332222232222 211 1111111000000000
Q ss_pred ---CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 293 ---SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 293 ---~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
..++-+||+|++...+...+..+...... .|+|+|+.--..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 13345999999988776777777666554 477887765443
No 282
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.49 E-value=0.035 Score=62.82 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccc----ccCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQ----DHFDLKTWTCVSDDFDVIRLTKAILTSIV 271 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1450)
...+++-|+|++|+|||+++.+++-..... ..=..++|++....|++.++.+ ++++++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 356899999999999999998876432221 1124689999999888887654 455553
No 283
>PRK08233 hypothetical protein; Provisional
Probab=95.47 E-value=0.04 Score=57.79 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.46 E-value=0.093 Score=54.62 Aligned_cols=119 Identities=16% Similarity=0.062 Sum_probs=60.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhc--CCC-----------CCCCC-
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVA--GQN-----------VDNHD- 280 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~-----------~~~~~- 280 (1450)
..+++|+|..|.|||||++.++.-.. .-...+++.-. +........-..+.- +.. ...-+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999987321 11223332211 111110111111100 000 01111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCchHHHH
Q 037733 281 LNKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 281 ~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 339 (1450)
-+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122233455666677889999988543 22222333333322223677888888876654
No 285
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.43 E-value=0.019 Score=60.70 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.++.|+|+.|+||||++..+... ........+++ +.++.. ..... ...+..... ...+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E--~~~~~-~~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIE--FVHES-KRSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCcc--ccccC-ccceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999988763 22233334433 222211 00000 000000000 0112233556677777777
Q ss_pred cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHH
Q 037733 296 KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 339 (1450)
+=.|++|.+.+. +.+....... ..|..|+.|+....+..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 889999999654 3333333222 34566888887765543
No 286
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.38 E-value=0.084 Score=58.19 Aligned_cols=137 Identities=21% Similarity=0.277 Sum_probs=74.6
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc-cccccCCcEEE----EEeCCccC-------
Q 037733 191 YGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD-RVQDHFDLKTW----TCVSDDFD------- 258 (1450)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~w----v~~~~~~~------- 258 (1450)
-+|..+..--+++|+++ .+..|.+.|.+|.|||.||.+..=.. ..++.|..++- +.++++..
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 35777777788888665 46899999999999999887654321 23344543332 22332211
Q ss_pred --HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH---------HHhCCC---cEEEEEeCCCCCChhhHHhhhccccCCCC
Q 037733 259 --VIRLTKAILTSIVAGQNVDNHDLNKLQVELN---------KQLSGK---KFLLVLDDVWNENYNYWVEFSRPFEAGAQ 324 (1450)
Q Consensus 259 --~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 324 (1450)
+.-.++.|...+..-..........+...+. .+++++ +-+||+|...+-...+...+ +...+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccC
Confidence 1222333333322111111111112222211 122333 45899999987655444444 444578
Q ss_pred CcEEEEecCchH
Q 037733 325 GSKIIVTTRNHE 336 (1450)
Q Consensus 325 gs~ilvTtr~~~ 336 (1450)
||||+.|---.+
T Consensus 378 GsKIVl~gd~aQ 389 (436)
T COG1875 378 GSKIVLTGDPAQ 389 (436)
T ss_pred CCEEEEcCCHHH
Confidence 999999876443
No 287
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.37 E-value=0.19 Score=53.19 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=104.0
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc----cccccCCcEEEEEeCCc---------
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD----RVQDHFDLKTWTCVSDD--------- 256 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 256 (1450)
+.++++....+....... ...-+.++|+.|.||-|.+..+.+.. -.+-+-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~~------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcccC------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 667777777776665422 35678899999999999888776531 01112234445443322
Q ss_pred -c-----------CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHHhhhccccCCC
Q 037733 257 -F-----------DVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKF-LLVLDDVWNENYNYWVEFSRPFEAGA 323 (1450)
Q Consensus 257 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~~ 323 (1450)
+ .-+.+.++++.++......+. -..+.| ++|+-.+++-..++..++++-.....
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 124455555555543322111 012334 56666665544455556666555556
Q ss_pred CCcEEEEecCc--hHHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChH
Q 037733 324 QGSKIIVTTRN--HEVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 324 ~gs~ilvTtr~--~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PL 388 (1450)
..+|+|+...+ +-+...-...-.+++...+++|....+.+.+-... ....+++.+|+++++|.--
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLR 223 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHH
Confidence 67887764322 11111111123478899999999988877653322 1347899999999998643
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.047 Score=62.99 Aligned_cols=24 Identities=38% Similarity=0.308 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+..++.++|++|+||||+|..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 289
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.35 E-value=0.043 Score=62.99 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccccc----CCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH----FDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
....++-|+|++|+|||++|.+++........ =..++|++..+.+++.++.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 35689999999999999999999864322111 14789999998888776654 33443
No 290
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.35 E-value=0.05 Score=54.15 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC---ccCHHHHHHHHHHHh-----hcCCCCCCCCHH-----
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD---DFDVIRLTKAILTSI-----VAGQNVDNHDLN----- 282 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~~~~~~~~~~----- 282 (1450)
..|-|++..|.||||+|...+- +...+=..+.++..-. ......+++.+ ..+ +........+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999988876 3222222344433322 22333333332 000 000000001111
Q ss_pred --HHHHHHHHHhCCCc-EEEEEeCCCCC---ChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 283 --KLQVELNKQLSGKK-FLLVLDDVWNE---NYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 283 --~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
+..+..++.+.... =|+|||++-.. ..-..+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233344444444 49999998432 1223445555555556677899999984
No 291
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0018 Score=67.64 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=47.7
Q ss_pred ccccEEEecCCCCCcCCcCccCCCccceeeccCCCcccccccccccCCccEEecCCCCchhHhh--hhhhhhcccCcccc
Q 037733 596 QRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLC--ADMEDLIRLHHLKN 673 (1450)
Q Consensus 596 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~l 673 (1450)
.+.+-|++.||.+..+ ..+.+++.|++|.|+-|+|+.| ..+.++++|+.|.|+. +.+..+- .-+.+|++|+.|-+
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 3444455555555544 1234555555555555555555 3345555555555554 2233221 12455666666666
Q ss_pred cCCCCCccCCCC-----CCCcccccccCc
Q 037733 674 SNTHSLEEMPLG-----IGKLTCLQTLCN 697 (1450)
Q Consensus 674 ~~~~~l~~lp~~-----i~~L~~L~~L~~ 697 (1450)
..|.-...-+.. +.-|++|+.|.+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccC
Confidence 555433332221 344555555543
No 292
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.065 Score=58.74 Aligned_cols=91 Identities=20% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHH-hhcCCCCCCCCHH---HHHHH
Q 037733 212 DGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTS-IVAGQNVDNHDLN---KLQVE 287 (1450)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~---~~~~~ 287 (1450)
-+..+++=|+|+.|.||||+|.+++-. .+..-..++|++..+.+++.++.+ +... +..-......+.+ ++++.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 356789999999999999999998763 333444889999999998876543 3333 2111111223333 33333
Q ss_pred HHHHhCCCcEEEEEeCCC
Q 037733 288 LNKQLSGKKFLLVLDDVW 305 (1450)
Q Consensus 288 l~~~l~~kr~LlVlDdv~ 305 (1450)
+......+--|+|+|.|-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 333333345689999884
No 293
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.30 E-value=0.23 Score=61.24 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=74.2
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
...++|+...++++.+.+..... .-.-|.|+|..|+|||++|+.+.+... ..-...+.|++..-.+ ..+..++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 35589999999998888866422 234578999999999999999987421 1112345555554332 1122222
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCch
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVTTRNH 335 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtr~~ 335 (1450)
.....+... .... ...-.+. ..+.. -|+||+|..-.......+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~-ga~~--~~~g~~~--~a~gG-tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFT-GAIS--NRSGKFE--LADGG-TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccC-CCcc--cCCcchh--hcCCC-EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 211111000 0000 0000011 12223 46899998876666666655543321 245888888653
No 294
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.27 E-value=0.025 Score=57.58 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=44.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHhCCC
Q 037733 218 VPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAG--QNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
+.|.|.+|+|||++|.++... ....++++.-...++.+ +.+.|....... ..........+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999999863 22356777766666543 444433321111 111111222333333221 2 2
Q ss_pred cEEEEEeCC
Q 037733 296 KFLLVLDDV 304 (1450)
Q Consensus 296 r~LlVlDdv 304 (1450)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 295
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.001 Score=69.26 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=34.9
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccch-hcccCCCCCCCceec
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESI-AERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L 1245 (1450)
+.++|++.+|.+..+. ....++.|+.|.|+-|.+... ..+..|++|++|.|..|.+...- -..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3445555555444321 122344555555555544432 22344445555555444443210 112344444444444
Q ss_pred ccCCCcc
Q 037733 1246 SDCENLK 1252 (1450)
Q Consensus 1246 ~~n~~~~ 1252 (1450)
..|+..+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 4444433
No 296
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.1 Score=60.09 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=57.6
Q ss_pred ceecch---hHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHH
Q 037733 189 EVYGRE---IEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 189 ~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1450)
++-|-| .|+++|+++|.++.. -+..-++-|.++|++|.|||-||++++.+..+- +|...+..|+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdE--- 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDE--- 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhh---
Confidence 355665 477888999966431 122346678899999999999999999854332 22233333331
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
++-.. ......+.+...-+.-++.|.+|.++.
T Consensus 376 ---m~VGv---------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ---MFVGV---------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---hhhcc---------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11000 112222333334456689999999855
No 297
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.052 Score=58.46 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc--cccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDD--RVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
-++|.++|++|.|||+|.+++++.. |..+.|....-+.+.. ..++.+-... ...-...+.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 4789999999999999999999965 3445554444444322 1111111110 2233445555666666
Q ss_pred CCCc--EEEEEeCCC
Q 037733 293 SGKK--FLLVLDDVW 305 (1450)
Q Consensus 293 ~~kr--~LlVlDdv~ 305 (1450)
.++. +.+.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 5554 455578883
No 298
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.22 E-value=0.072 Score=67.19 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=87.5
Q ss_pred cceecchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.++.|.+..++++.+....... ....-.+-|.++|++|+|||++|+.+++. ....| +.++.++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 3466776666555544421100 00111234889999999999999999873 22222 2222211
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hhhHHh----hhccccC--CCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------YNYWVE----FSRPFEA--GAQG 325 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----~~~~l~~--~~~g 325 (1450)
+.. ... ......+...+.......+.+|++|+++.-. ...+.. +...+.. ...+
T Consensus 221 ~~~----~~~------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FVE----MFV------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hHH----hhh------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 110 010 0112233334444445578899999985421 111222 2111211 1234
Q ss_pred cEEEEecCchHHHH-hc---C-CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC
Q 037733 326 SKIIVTTRNHEVAE-IM---G-TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 326 s~ilvTtr~~~v~~-~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~ 386 (1450)
.-||.||...+... .+ + -...+.+...+.++-.+++..+.....-...-....+++.+.|.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~ 356 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGF 356 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCC
Confidence 45555777654322 11 1 23557788888887788887765332110011123456666653
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.22 E-value=0.15 Score=52.20 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccc-ccc--CC---cEEEEEeCCccCH--HHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRV-QDH--FD---LKTWTCVSDDFDV--IRLTKAILTSIVAGQNVDNHDLNKLQV 286 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 286 (1450)
..+++|+|..|.|||||++.++.-... .+. ++ .+.++ .+.... ..+...+... ....-..-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP----WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc----CCCCCCHHHHHHH
Confidence 458999999999999999999874221 111 11 12222 222211 1222222110 1111122233334
Q ss_pred HHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCchHHHH
Q 037733 287 ELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 339 (1450)
.+.+.+..++=++++|.--.. +......+...+... +..||++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 455666677788899986432 222233333333322 456888888876553
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.22 E-value=0.14 Score=60.56 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC--HHHHHHHHHHHhhcCCCC--CCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD--VIRLTKAILTSIVAGQNV--DNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l 288 (1450)
..+.+|.++|.+|+||||.|..++.... +..+ .+..|++. .+. ..+.++.++.+++.+... ...+........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3578999999999999999999987432 1222 33334332 222 234455555555432211 122333333322
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 037733 289 NKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 289 ~~~l~~kr~LlVlDdv~~ 306 (1450)
.+...+. -+||+|..-.
T Consensus 170 l~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 170 LEKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHHhhcC-CEEEEECCCc
Confidence 3333333 5688888743
No 301
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.16 E-value=0.13 Score=52.77 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=61.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc---cccccc---CC--cEEEEEeCCccCHHHHHHHHHHHhhcCCC---CCC--CCH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND---DRVQDH---FD--LKTWTCVSDDFDVIRLTKAILTSIVAGQN---VDN--HDL 281 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~--~~~ 281 (1450)
..+++|+|+.|+|||||.+.+..+ .++... |. .+.|+ .+ .+.+..+..... ... -+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999998632 111111 10 12232 11 344555543211 111 111
Q ss_pred -HHHHHHHHHHhCCC--cEEEEEeCCCCC-ChhhHHhhhccccC-CCCCcEEEEecCchHHHH
Q 037733 282 -NKLQVELNKQLSGK--KFLLVLDDVWNE-NYNYWVEFSRPFEA-GAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 282 -~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v~~ 339 (1450)
....-.+.+.+..+ +-++++|..-.. +......+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22233455556666 778888987442 22333333333322 124677889998877654
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.15 Score=52.60 Aligned_cols=119 Identities=20% Similarity=0.173 Sum_probs=60.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC--ccCHHHHHHHHHHHhhc--CC-CCCC-------CCH-
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD--DFDVIRLTKAILTSIVA--GQ-NVDN-------HDL- 281 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~-~~~~-------~~~- 281 (1450)
..+++|+|+.|.|||||.+.++.-. ......+++.-.. ........ ..+.- +. ..-. -+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhCHH
Confidence 4689999999999999999998732 1223333332110 00111111 11110 00 0000 011
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCchHHHHh
Q 037733 282 NKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEI 340 (1450)
Q Consensus 282 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~ 340 (1450)
+...-.+.+.+..++-++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11223355666677889999987542 222233333333222235678888888766653
No 303
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.07 Score=57.15 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=69.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccc-----cc--c----cC---CcEEEEEeCCcc------CH---------------
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDR-----VQ--D----HF---DLKTWTCVSDDF------DV--------------- 259 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~-----~~--~----~f---~~~~wv~~~~~~------~~--------------- 259 (1450)
..+++|+|+.|.|||||.+.+..-.. +. . .+ ..+.||.=...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999986110 10 0 01 235554321111 11
Q ss_pred -------HHHHHHHHHHhhcCCC----CCC-CCHHHHHHHHHHHhCCCcEEEEEeCC----CCCChhhHHhhhccccCCC
Q 037733 260 -------IRLTKAILTSIVAGQN----VDN-HDLNKLQVELNKQLSGKKFLLVLDDV----WNENYNYWVEFSRPFEAGA 323 (1450)
Q Consensus 260 -------~~~~~~i~~~l~~~~~----~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~~~~~l~~~~ 323 (1450)
.+...+.++.++...- ... ..-+.....+.+.|..++=|+|||.- +.......-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 1334444554443211 011 12233345667888999999999964 322233344444444433
Q ss_pred CCcEEEEecCchHHHH
Q 037733 324 QGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 324 ~gs~ilvTtr~~~v~~ 339 (1450)
|..||++|.+-....
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 889999999865443
No 304
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.10 E-value=0.071 Score=60.63 Aligned_cols=57 Identities=21% Similarity=0.085 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
....++.|+|.+|+||||||..++....... .-..++|++..+.++..++ .++++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 3468999999999999999998875322211 1135799998887777653 3344443
No 305
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.019 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
--|.|.||+|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46889999999999999999974
No 306
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.08 E-value=0.038 Score=61.84 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+..++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 307
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.08 E-value=0.24 Score=55.51 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.1
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++=+.+....+...+... +-|.|.|++|+||||+|+.++. +....| +.|......+..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~ 104 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRI 104 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChh
Confidence 3444445566677777443 3588999999999999999998 333222 344554444433
No 308
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.064 Score=61.66 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=48.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC-ccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD-DFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1450)
..++.++|+.|+||||++..++.....+.....+..++... .....+-++...+.++.... ...+..++...+. .+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-Hhc
Confidence 46899999999999999999987322121123455555322 12233444444444443322 2222223333333 344
Q ss_pred CCcEEEEEeCCCC
Q 037733 294 GKKFLLVLDDVWN 306 (1450)
Q Consensus 294 ~kr~LlVlDdv~~ 306 (1450)
++ =++++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566898854
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.05 E-value=0.14 Score=52.78 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEE------eCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTC------VSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVEL 288 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 288 (1450)
..+++|+|+.|+|||||++.++.-.. .....+++. +.+... -..-+...-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~l 82 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAI 82 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHH
Confidence 35899999999999999999987321 122222221 111110 11112233345
Q ss_pred HHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCC--CCCcEEEEecCchHHHHh
Q 037733 289 NKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAG--AQGSKIIVTTRNHEVAEI 340 (1450)
Q Consensus 289 ~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~--~~gs~ilvTtr~~~v~~~ 340 (1450)
.+.+..++-++++|.--.. +......+...+... ..+..||++|.+......
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 5666677889999987442 222222333333221 123568888887665543
No 310
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.04 E-value=0.17 Score=60.04 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV--IRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
.+++.++|++|+||||++..++........-..+..|+... +.. .+.++...+.++.... ...+..++...+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-
Confidence 46999999999999999888876322012223455565432 211 1122222222322221 223344555555443
Q ss_pred CCCcEEEEEeCCCC
Q 037733 293 SGKKFLLVLDDVWN 306 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~ 306 (1450)
. ..=+|++|..-.
T Consensus 298 ~-~~DlVlIDt~G~ 310 (424)
T PRK05703 298 R-DCDVILIDTAGR 310 (424)
T ss_pred C-CCCEEEEeCCCC
Confidence 3 356888997633
No 311
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.01 E-value=0.088 Score=60.46 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=40.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRLTKAILTS 269 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1450)
...++-|+|.+|+||||+|.+++....... .=..++|++....++..++.+ +++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~ 152 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEA 152 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHH
Confidence 468999999999999999999976432211 113789999998888776543 3443
No 312
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.035 Score=57.06 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.00 E-value=0.08 Score=54.08 Aligned_cols=117 Identities=16% Similarity=0.067 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC--ccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD--DFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
..+++|+|..|.|||||.+.++... ......+++.... ..+..+..+ ..+..-. .-..-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHH
Confidence 3589999999999999999998732 2233444443211 111111111 0111100 1111223334455666
Q ss_pred CCCcEEEEEeCCCCC-ChhhHHhhhccccCC-CCCcEEEEecCchHHHH
Q 037733 293 SGKKFLLVLDDVWNE-NYNYWVEFSRPFEAG-AQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~ilvTtr~~~v~~ 339 (1450)
-.++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 777888999987442 223333333333221 23667888888876443
No 314
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.19 Score=59.09 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=85.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
..-|.+||++|+|||-||++|++. .+.. |+++-++ + ++....+ .+.......+++.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~N-----FisVKGP----E----LlNkYVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGAN-----FISVKGP----E----LLNKYVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCc-----eEeecCH----H----HHHHHhh------hHHHHHHHHHHHhhcC
Confidence 556789999999999999999994 3333 4555432 1 1121111 2233445555666677
Q ss_pred CcEEEEEeCCCCC-----Chhh------HHhhhccccC--CCCCcEEEEecCchHHHHh-c---C-CCCceeCCCCCHHH
Q 037733 295 KKFLLVLDDVWNE-----NYNY------WVEFSRPFEA--GAQGSKIIVTTRNHEVAEI-M---G-TVPPHPLKELSDND 356 (1450)
Q Consensus 295 kr~LlVlDdv~~~-----~~~~------~~~~~~~l~~--~~~gs~ilvTtr~~~v~~~-~---~-~~~~~~l~~L~~~~ 356 (1450)
.+++|.+|.++.- +... ..++..-+.. ...|..||-.|..+++... + | -....-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999999541 1111 2223333322 2457777777766554321 1 1 12456677777788
Q ss_pred HHHHHHhccCC--CC----chhHHHHHHHHHHhCCC
Q 037733 357 CLAIFAQHSLG--PR----ELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 357 ~~~lf~~~~~~--~~----~~~~~~~~~i~~~~~G~ 386 (1450)
-.++++...-. +. -.++++|+. .+|.|.
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 88888776542 11 145555542 355554
No 315
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=1 Score=50.58 Aligned_cols=157 Identities=9% Similarity=0.041 Sum_probs=90.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccc---c---cc--ccCCcEEEEEe-CCccCHHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDD---R---VQ--DHFDLKTWTCV-SDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQ 285 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 285 (1450)
..+..++|..|+||+++|..+.+.. . .. .|=+...++.. +......++. ++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 4677799999999999999987632 0 01 11112223221 1111221111 1222211100
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CchHHHHh-cCCCCceeCCCCCHHHHHHHHHh
Q 037733 286 VELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTT-RNHEVAEI-MGTVPPHPLKELSDNDCLAIFAQ 363 (1450)
Q Consensus 286 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 363 (1450)
.-.+++=++|+|++...+......+...+..-..++.+|++| ....+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 002467788999997776667777777776656677766655 44444432 33457799999999999877765
Q ss_pred ccCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 037733 364 HSLGPRELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 364 ~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
. +. .++.+..++...+|.=-|+..+
T Consensus 161 ~--~~---~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 K--NK---EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred c--CC---ChhHHHHHHHHcCCHHHHHHHH
Confidence 4 11 2345666666677633455443
No 316
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.12 Score=65.23 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=71.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCC--CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRND--GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
..++|-++.+..|.+.+........ .......+.|+.|+|||-||++++. -+-+..+..+-+..+ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 4577888888888888865432111 2466788999999999999999987 332333334444333 2222
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcE-EEEEeCCCCCChhhHHhhhcccc
Q 037733 266 ILTSIVAGQNVDNHDLNKLQVELNKQLSGKKF-LLVLDDVWNENYNYWVEFSRPFE 320 (1450)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~l~ 320 (1450)
+.+-++.+...... +....+.+.++.++| +|.||||...+......+...+.
T Consensus 633 vskligsp~gyvG~---e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcccccc---hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 22222222111111 122356667777776 66789998877666665544443
No 317
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.92 E-value=0.095 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 318
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.91 E-value=0.037 Score=59.17 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHH--
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV--DNHDLNKLQVELNK-- 290 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~-- 290 (1450)
.+++.|+|+.|.||||+.+.+...... .+-...+|.. . ... ....++...+...... .......-.+++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 378999999999999999998742111 1111122211 0 000 0111222222211110 00111111111222
Q ss_pred HhCCCcEEEEEeCCCCCC-hhhH----HhhhccccCC-CCCcEEEEecCchHHHHhc
Q 037733 291 QLSGKKFLLVLDDVWNEN-YNYW----VEFSRPFEAG-AQGSKIIVTTRNHEVAEIM 341 (1450)
Q Consensus 291 ~l~~kr~LlVlDdv~~~~-~~~~----~~~~~~l~~~-~~gs~ilvTtr~~~v~~~~ 341 (1450)
.+..++.|+++|....-. ..+. ..+...+... ..+..+|+||...+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 234678999999986532 1111 1222333222 2345799999998887654
No 319
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.91 E-value=0.016 Score=59.22 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHhCC
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN--VDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l~~ 294 (1450)
++.|.|.+|+||||+|..++... .. .+.++.....++ .+..+.|......... ........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68899999999999999998631 11 234444434333 3444555433322211 0111122344444443332
Q ss_pred CcEEEEEeCC
Q 037733 295 KKFLLVLDDV 304 (1450)
Q Consensus 295 kr~LlVlDdv 304 (1450)
.-++|+|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 320
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.048 Score=64.95 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc--CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF--DVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
..-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-. ....+++ .+...+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk------------------~l~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK------------------FLNNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH------------------HHHHHHHHHH
Confidence 45688999999999999999998543 4455556666665321 1112111 1222334456
Q ss_pred CCCcEEEEEeCCCC
Q 037733 293 SGKKFLLVLDDVWN 306 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~ 306 (1450)
...+-+|||||++.
T Consensus 492 ~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDC 505 (952)
T ss_pred hhCCcEEEEcchhh
Confidence 77899999999943
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.12 Score=61.30 Aligned_cols=89 Identities=16% Similarity=0.060 Sum_probs=45.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC--HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD--VIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
...+++|+|++|+||||++..++.....+.....+..++.. .+. ..+.++.....++.... ...+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~- 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLER- 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHH-
Confidence 45799999999999999998887632111112234444432 222 12222222222221111 22334445544443
Q ss_pred hCCCcEEEEEeCCCC
Q 037733 292 LSGKKFLLVLDDVWN 306 (1450)
Q Consensus 292 l~~kr~LlVlDdv~~ 306 (1450)
+. +.=+|++|..-.
T Consensus 426 l~-~~DLVLIDTaG~ 439 (559)
T PRK12727 426 LR-DYKLVLIDTAGM 439 (559)
T ss_pred hc-cCCEEEecCCCc
Confidence 33 345888888743
No 322
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.87 E-value=0.12 Score=60.79 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH--HHHHHHHHHHhhcCCCC--CCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV--IRLTKAILTSIVAGQNV--DNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l 288 (1450)
..+.++.++|.+|+||||.|..++.....+..+ .++.|++ +.+.. .+-++.....++.+... ...+..++....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~-D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVAC-DLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEec-cccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 346899999999999999998888632111222 2333333 22322 22233334433322110 123344444333
Q ss_pred HHHhCCCcE-EEEEeCCC
Q 037733 289 NKQLSGKKF-LLVLDDVW 305 (1450)
Q Consensus 289 ~~~l~~kr~-LlVlDdv~ 305 (1450)
.+....+.+ ++|+|-.-
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 333333444 78888764
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=94.86 E-value=0.13 Score=60.69 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+.+|.++|.+|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998888876
No 324
>PTZ00301 uridine kinase; Provisional
Probab=94.86 E-value=0.042 Score=58.16 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999999876
No 325
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.84 E-value=0.097 Score=55.33 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccc-cCC---cEEEEEeCCccCHHHHHHHHHHHhhcC---CCCCCCCHHHHHHHHH
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQD-HFD---LKTWTCVSDDFDVIRLTKAILTSIVAG---QNVDNHDLNKLQVELN 289 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~~l~ 289 (1450)
||+|.|.+|+||||+|+.+... ... ... ....+....-......... -...... .....-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 7999999999999999999873 321 222 2333333222222221111 1111111 1124567777888887
Q ss_pred HHhCCCcEEEE
Q 037733 290 KQLSGKKFLLV 300 (1450)
Q Consensus 290 ~~l~~kr~LlV 300 (1450)
...+++.+-+-
T Consensus 78 ~L~~g~~i~~p 88 (194)
T PF00485_consen 78 ALKNGGSIEIP 88 (194)
T ss_dssp HHHTTSCEEEE
T ss_pred HHhCCCccccc
Confidence 77677665443
No 326
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.84 E-value=0.085 Score=59.99 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCcHH-HHHHHHhccccccccCCcEEEEEeCCc-cCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKT-TLARHVYNDDRVQDHFDLKTWTCVSDD-FDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKT-tLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1450)
+.+||.+||+.|+||| |||+..+.-... ..=..+..++...- ....+-++.-++-++.+-. -..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh
Confidence 3689999999999999 566665542211 22234566655321 1233333344444443332 344556666555443
Q ss_pred hCCCcEEEEEeCCCC
Q 037733 292 LSGKKFLLVLDDVWN 306 (1450)
Q Consensus 292 l~~kr~LlVlDdv~~ 306 (1450)
++. =+|.+|=+..
T Consensus 280 -~~~-d~ILVDTaGr 292 (407)
T COG1419 280 -RDC-DVILVDTAGR 292 (407)
T ss_pred -hcC-CEEEEeCCCC
Confidence 333 3455565533
No 327
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.18 Score=62.15 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
...+.+-++|++|.|||.||+++++ ..+.+|- .+... +++... -......+...+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~--------~l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS--------ELLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH--------HHhccc------cchHHHHHHHHHHHHH
Confidence 3456889999999999999999998 3333442 22221 111111 1112334445555555
Q ss_pred CCCcEEEEEeCCCCC------C-h----hhHHhhhccccCC--CCCcEEEEecCchHHHH-hc----CCCCceeCCCCCH
Q 037733 293 SGKKFLLVLDDVWNE------N-Y----NYWVEFSRPFEAG--AQGSKIIVTTRNHEVAE-IM----GTVPPHPLKELSD 354 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~------~-~----~~~~~~~~~l~~~--~~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~ 354 (1450)
+..+..|.+|.++.- . . .....+...+... ..+..||-||-...... .+ .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 788999999999441 0 0 1222333333322 23334455554443222 11 1235678888899
Q ss_pred HHHHHHHHhccCCCCc--hhHHHHHHHHHHhCC
Q 037733 355 NDCLAIFAQHSLGPRE--LLDEIGKKLVSKCGG 385 (1450)
Q Consensus 355 ~~~~~lf~~~~~~~~~--~~~~~~~~i~~~~~G 385 (1450)
++..+.|..+...... ...-..+.+++...|
T Consensus 413 ~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 413 EERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999887753221 112334445555554
No 328
>PRK13695 putative NTPase; Provisional
Probab=94.76 E-value=0.023 Score=58.97 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 329
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.75 E-value=0.13 Score=56.44 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC-----------------
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----------------- 275 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 275 (1450)
+...++.|+|.+|+|||++|.++.... .+ .=..++|++..+.+ .++.+++ .+++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356799999999999999999986532 22 22468888886543 3444432 22211000
Q ss_pred --CCCCCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 037733 276 --VDNHDLNKLQVELNKQLSG-KKFLLVLDDVW 305 (1450)
Q Consensus 276 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 305 (1450)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55689999874
No 330
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.74 E-value=0.24 Score=60.95 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=34.1
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++|....+.++++.+..... .-.-|.|+|..|+||+++|+++..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 489999888888777753211 112477999999999999999865
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=94.73 E-value=0.21 Score=56.89 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC--HHHHHHHHHHHhhcCCC--CCCCCHHH-HHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD--VIRLTKAILTSIVAGQN--VDNHDLNK-LQVEL 288 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~--~~~~~~~~-~~~~l 288 (1450)
+..++.++|++|+||||++..++.... ...+ .++.+. .+.+. ..+.++.....++.... ....+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876322 1223 233333 23332 22334444555543221 11223322 22333
Q ss_pred HHHhCCCcEEEEEeCCCCC
Q 037733 289 NKQLSGKKFLLVLDDVWNE 307 (1450)
Q Consensus 289 ~~~l~~kr~LlVlDdv~~~ 307 (1450)
........=++++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222338999988553
No 332
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.72 E-value=0.016 Score=36.07 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=18.9
Q ss_pred cccEEEecCCCCCcCCcCccCC
Q 037733 597 RLRVFSLCGYHISKLPDSIGDL 618 (1450)
Q Consensus 597 ~Lr~L~L~~~~i~~lp~~i~~L 618 (1450)
+|++|||++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 333
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.27 Score=55.91 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc-CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF-DVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
..+++.++|+.|+||||++..++.....+ . ..+.+++..... ...+-++.....+..... ...+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 46899999999999999999988642112 1 245566653221 223344444444443222 2345666666555432
Q ss_pred -CCCcEEEEEeCCCC
Q 037733 293 -SGKKFLLVLDDVWN 306 (1450)
Q Consensus 293 -~~kr~LlVlDdv~~ 306 (1450)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456888898754
No 334
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.70 E-value=0.15 Score=58.26 Aligned_cols=58 Identities=19% Similarity=0.078 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHHHHHHHHHhh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRLTKAILTSIV 271 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 271 (1450)
....++-|+|.+|+|||++|..++-...... .-..++|++....|.+.++. ++++.+.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3467899999999999999988875322211 11368999999999887764 4555543
No 335
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.21 Score=51.71 Aligned_cols=119 Identities=20% Similarity=0.153 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhh--cCCC-C-CC--------CCHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIV--AGQN-V-DN--------HDLN 282 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~-~-~~--------~~~~ 282 (1450)
..+++|+|..|.|||||++.++.... .....+++.-....+.. ......+. .+.. . .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 36899999999999999999987421 22333333211000000 00001110 0000 0 00 1111
Q ss_pred -HHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccCC-CCCcEEEEecCchHHHH
Q 037733 283 -KLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEAG-AQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 283 -~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~ilvTtr~~~v~~ 339 (1450)
...-.+.+.+..++=++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2233466677788889999987443 222333333333321 23677899998876554
No 336
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.68 E-value=0.066 Score=61.55 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=71.1
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
.++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.+..... ..-...+.|++.... ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 489999999988888865421 123577999999999999999986321 111233445554422 2222222221
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCch
Q 037733 269 SIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVTTRNH 335 (1450)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtr~~ 335 (1450)
.-.+... ... ......+. ....=.|+||+|..-....+..+...+..+. ...|||.||...
T Consensus 80 ~~~~~~~-g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFT-GAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccC-Ccc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1110000 000 00001111 1223357899998766556666655443211 136888887653
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.63 E-value=0.2 Score=54.99 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+..|+|+||+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999999876
No 338
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.61 E-value=0.095 Score=51.17 Aligned_cols=100 Identities=20% Similarity=0.138 Sum_probs=46.0
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
+|+.+.+.. .........|.++++|+.+.+..+ +.......|.++++|+.+.+.. .........+..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 445555442 233333445666767777777653 3333345566676777777754 3333333455667777777776
Q ss_pred cCCCcccccccccCCCccceEeecc
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFR 1271 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~ 1271 (1450)
.+ +...-...+.++ +|+.+.+..
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT
T ss_pred cc-ccEEchhhhcCC-CceEEEECC
Confidence 54 333333455565 777777654
No 339
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.60 E-value=0.092 Score=60.39 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=37.0
Q ss_pred cceecchhHHHHHHHHHhcCC--------CCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDD--------LRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|.++.++.+.-.+.... .......+-|.++|++|+|||++|+.++..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899888888876665320 001113467889999999999999999983
No 340
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.55 E-value=0.31 Score=54.85 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=35.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
..++.|.|.+|+||||+|.+++.... ..+=..++|++...+ ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 45888999999999999999877421 221245788887653 445555554443
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.51 E-value=0.18 Score=56.12 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH--HHHHHHHHHhhcCC--CCCCCCHHH-HHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI--RLTKAILTSIVAGQ--NVDNHDLNK-LQVE 287 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~--~~~~~~~~~-~~~~ 287 (1450)
.+.+++.++|++|+||||.+..++.. ....-..+.++... .+... +-++......+... .....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 34689999999999999999988863 32222245555443 33222 22222333333211 001122322 2334
Q ss_pred HHHHhCCCcEEEEEeCCCC
Q 037733 288 LNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 288 l~~~l~~kr~LlVlDdv~~ 306 (1450)
+........=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444455788887743
No 342
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.50 E-value=0.16 Score=52.50 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC--ccCHHHHHHHHHHHhhcCCCCCC-------CC-HHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD--DFDVIRLTKAILTSIVAGQNVDN-------HD-LNKL 284 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~-------~~-~~~~ 284 (1450)
..+++|+|..|.|||||.+.++.-. ......+++.-.. ........+.+. .+......-. -+ -+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 3589999999999999999998732 1222333322110 011111111110 0000000000 01 1122
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccC-CCCCcEEEEecCchHHHH
Q 037733 285 QVELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEA-GAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 285 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v~~ 339 (1450)
.-.+.+.+-.++-++++|+.... +......+...+.. ...|..||++|.+.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33455566667778999987542 22222333333322 123667888888876654
No 343
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.49 E-value=0.16 Score=55.35 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 212 DGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++..+++|.|+.|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999987
No 344
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.49 E-value=0.11 Score=66.81 Aligned_cols=134 Identities=17% Similarity=0.107 Sum_probs=72.1
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
.++|+...+.++.+.+..... .-.-|.|+|..|+|||++|+.+++... +. -...+.+++..-. ...+...+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~-~~~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RN-NRRMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CC-CCCeEEEecccCC-hhHhhhhhcC
Confidence 589999999888777654321 123578999999999999999987421 11 1234444544322 1112222221
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCC-----------CCCcEEEEecCch
Q 037733 269 SIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAG-----------AQGSKIIVTTRNH 335 (1450)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTtr~~ 335 (1450)
...+... .. .......+. ....=.|+||+|..-.......+...+..+ ..+.|||.||...
T Consensus 450 ~~~~~~~-g~--~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFT-GA--SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccc-cc--ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111000 00 000111111 123356999999876655555665544321 1345888888653
No 345
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.11 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 346
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.46 E-value=0.06 Score=55.09 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=28.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcccccc-ccCCcEEEEEeCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQ-DHFDLKTWTCVSD 255 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~ 255 (1450)
..++.+.|+.|+|||.+|+.+++ .+. +.....+-+..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 46888999999999999999987 333 3334455555543
No 347
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.43 E-value=0.26 Score=61.42 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=71.8
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
...++|....+.++.+.+..... ...-|.|+|..|+|||++|+.+++... ..-...+.+++..-.+ ..+...+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~-~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE-TLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH-HHHHHHH
Confidence 35699999999998888865321 123567999999999999999987421 1112334445443321 1111122
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVTTRN 334 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtr~ 334 (1450)
. +........... ......-....-.|+||+|..-....+..+...+..+. ...|||.||..
T Consensus 268 f----g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 268 F----GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred c----CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1 111000000000 00000001233468899998766666666655543321 13588887754
No 348
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.40 E-value=0.051 Score=53.87 Aligned_cols=36 Identities=31% Similarity=0.182 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEE
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTC 252 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 252 (1450)
..||.|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 4443333444443
No 349
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.40 E-value=0.16 Score=58.45 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=33.7
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+||+...+.++.+.+..... .-.-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777755421 1235789999999999999999863
No 350
>PRK07667 uridine kinase; Provisional
Probab=94.36 E-value=0.081 Score=55.77 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 197 KKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+.+.+.+.... ++..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666664432 3458999999999999999999987
No 351
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.29 E-value=0.15 Score=54.83 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 352
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.29 E-value=0.018 Score=61.93 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=80.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV--DNHDLNKLQVELNKQ 291 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~ 291 (1450)
..+++.|+|+.|.||||+.+.+..-. +-.+ .-.+|.+... .......++..++..... .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~la~--~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-LMAQ--IGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-HHHH--hCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 35799999999999999988876321 0000 0012222110 000112222222211110 111111222223333
Q ss_pred h--CCCcEEEEEeCCCC---CC---hhhHHhhhccccCCCCCcEEEEecCchHHHHhcCCCCc---eeCCCCCHH--HHH
Q 037733 292 L--SGKKFLLVLDDVWN---EN---YNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMGTVPP---HPLKELSDN--DCL 358 (1450)
Q Consensus 292 l--~~kr~LlVlDdv~~---~~---~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~---~~l~~L~~~--~~~ 358 (1450)
+ ..++-|+++|..-. .. ...|..+ ..+.. ..|+.+|+||...++...+..... .++.....+ +.+
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 3 35788999999832 11 1122221 22222 347889999998777664432221 222111111 111
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhc
Q 037733 359 AIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLR 398 (1450)
Q Consensus 359 ~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~ 398 (1450)
. |..+. .+.......|-++++++ |+|-.+..-|..+.
T Consensus 182 ~-~~Y~l-~~G~~~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 T-MLYKV-EKGACDQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred e-EEEEE-eeCCCCCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 1 11111 11111234566677666 88988877776654
No 353
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.26 E-value=0.033 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+|.|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 354
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.27 Score=57.21 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=50.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc-cC-CcEEEEEeCCccCH--HHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQD-HF-DLKTWTCVSDDFDV--IRLTKAILTSIVAGQNVDNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f-~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 289 (1450)
..++|.++|+.|+||||.+..++....... +- ..+..+++ +++.. ..-++..++.++.+.. ...+.+++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 357999999999999999998886322211 11 23444444 34332 2224444444443322 2334455555555
Q ss_pred HHhCCCcEEEEEeCCCC
Q 037733 290 KQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~l~~kr~LlVlDdv~~ 306 (1450)
+. .+.-++++|.+..
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456889998854
No 355
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.24 E-value=0.18 Score=55.71 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC------CCCCHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV------DNHDLNKLQVEL 288 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~l 288 (1450)
..-++|+|+.|.|||||.+.++... . .....+++.-. .....+-..++......-... +..+.......+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCE-EeecchhHHHHHHHhcccccccccccccccccchHHHHH
Confidence 4678999999999999999999732 2 22233333210 000000112332222110000 000100011122
Q ss_pred HHHh-CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHH
Q 037733 289 NKQL-SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 289 ~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 339 (1450)
...+ ...+=++++|.+... +.+..+...+. .|..||+||.+..+..
T Consensus 187 ~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 2222 257889999998543 44555544442 4778999999876644
No 356
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.23 E-value=0.41 Score=50.60 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCC-CChhhHHhhhccccC--CCCCcEEEEecCchHHHHhcC
Q 037733 282 NKLQVELNKQLSGKKFLLVLDDVWN-ENYNYWVEFSRPFEA--GAQGSKIIVTTRNHEVAEIMG 342 (1450)
Q Consensus 282 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~~~~~l~~--~~~gs~ilvTtr~~~v~~~~~ 342 (1450)
++..-.+.+.+-..+-+|+-|.--. -+...-..+...+.. ...|..||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3445567778888888999986422 111222233333332 235788999999999998653
No 357
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.23 E-value=0.17 Score=52.45 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999887
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.20 E-value=0.54 Score=48.43 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=68.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeC-------------------CccC-----------------
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVS-------------------DDFD----------------- 258 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~----------------- 258 (1450)
..|++|+|+.|+|||||.+.+-.= ...=...+|+.-. +.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 469999999999999999998642 1112233443221 1111
Q ss_pred --------HHHHHHHHHHHhhcCCCC-----CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-hhhHHhhhccccC-CC
Q 037733 259 --------VIRLTKAILTSIVAGQNV-----DNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-YNYWVEFSRPFEA-GA 323 (1450)
Q Consensus 259 --------~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~l~~-~~ 323 (1450)
.++...++++.++..... .-..-++..-.|.+.|.=++-++.+|..-+.- ++.-.++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 233333444444332211 11222344456778888888899999986642 2222233222221 23
Q ss_pred CCcEEEEecCchHHHHhc
Q 037733 324 QGSKIIVTTRNHEVAEIM 341 (1450)
Q Consensus 324 ~gs~ilvTtr~~~v~~~~ 341 (1450)
.|-..|+.|..-..|+.+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 566777777776666544
No 359
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.18 E-value=0.033 Score=54.47 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 360
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.13 E-value=0.11 Score=59.83 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=37.3
Q ss_pred cceecchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 188 TEVYGREIEKKQVIDLLLRD--------DLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++|.++.++.+..++... ........+-+.++|++|+|||++|+.++.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999888887541 000111246789999999999999999987
No 361
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=1 Score=46.79 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=80.1
Q ss_pred eecc-hhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 190 VYGR-EIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 190 ~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
+||+ +..+++|.+.+.-+-. -+-.+++-+.++|++|.|||-||++|+++ ....|+.||...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse---- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE---- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH----
Confidence 5554 5556665555432110 13346677889999999999999999983 345667776532
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------h---hHHhhhccccC--CCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-----------N---YWVEFSRPFEA--GAQG 325 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~---~~~~~~~~l~~--~~~g 325 (1450)
+.+. ..+... .-..++.-.-+ ..-+..|..|.+++... + ..-++...+.. ..+.
T Consensus 217 lvqk----~igegs---rmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQK----YIGEGS---RMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHH----HhhhhH---HHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 2221 111100 00111111111 24567788887755210 1 11122222222 2345
Q ss_pred cEEEEecCchHHHHh--cC---CCCceeCCCCCHHHHHHHHHhcc
Q 037733 326 SKIIVTTRNHEVAEI--MG---TVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 326 s~ilvTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
-+||..|..-++... +. ....++..+-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 678877765444322 11 22456777777776677776543
No 362
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.11 E-value=0.31 Score=56.44 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|.||||||+.+..
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999864
No 363
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.10 E-value=0.19 Score=52.84 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 037733 212 DGGFSVVPIVGMGGLGKTTLARHVYNDD 239 (1450)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1450)
..+..+|.++||+|.||||..+.++.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 3456788999999999999999998743
No 364
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.10 E-value=0.25 Score=57.89 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=35.9
Q ss_pred CcceecchhHHHHHHHHHhc------C--CCCCCC----CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 187 KTEVYGREIEKKQVIDLLLR------D--DLRNDG----GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~~----~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+..++|.++.++.+...+.. . ....++ ....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45689999998888765521 0 000111 135788999999999999999986
No 365
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.07 E-value=0.043 Score=58.77 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|+|++|+||||||+.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999986
No 366
>PRK05439 pantothenate kinase; Provisional
Probab=94.06 E-value=0.28 Score=55.03 Aligned_cols=81 Identities=16% Similarity=0.086 Sum_probs=45.3
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--CCcEEEEEeCCccCHHHHHHHHHHHhh-cCCCCCCCCHHHHHHHH
Q 037733 212 DGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH--FDLKTWTCVSDDFDVIRLTKAILTSIV-AGQNVDNHDLNKLQVEL 288 (1450)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~l 288 (1450)
.+..-+|+|.|.+|+||||+|+.+.. ..... -..+.-++..+-+.....+.+ ..+. .....+.-|.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 35678999999999999999999876 23221 123444444433322222211 1111 11112445667777777
Q ss_pred HHHhCCCc
Q 037733 289 NKQLSGKK 296 (1450)
Q Consensus 289 ~~~l~~kr 296 (1450)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 76666654
No 367
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.03 E-value=0.045 Score=58.78 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 368
>PTZ00035 Rad51 protein; Provisional
Probab=94.02 E-value=0.35 Score=55.60 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcccccc----ccCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQ----DHFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
....++.|+|.+|+|||||+..++-..... ..=..++|+.....++..++ .++++..
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 456899999999999999999887533211 11235679998887777664 3344443
No 369
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.01 E-value=0.14 Score=54.25 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc-CHHHHHHHHHHHhhcCC-----CCCCCCH-------
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF-DVIRLTKAILTSIVAGQ-----NVDNHDL------- 281 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~------- 281 (1450)
...++|.|.+|+|||+|+..+.++. .-+.++++.+++.. .+.++.+++...-.... .......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578999999999999999998843 22345777777554 45566665543311110 0011111
Q ss_pred ---HHHHHHHHHHhCCCcEEEEEeCC
Q 037733 282 ---NKLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 282 ---~~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
-..++.++. +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 112333333 799999999999
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.94 E-value=0.027 Score=52.95 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCC
Q 037733 218 VPIVGMGGLGKTTLARHVYNDDRVQDHFD 246 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 246 (1450)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57999999999999999998 4555664
No 371
>PRK06547 hypothetical protein; Provisional
Probab=93.94 E-value=0.074 Score=54.46 Aligned_cols=26 Identities=46% Similarity=0.557 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 372
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.81 E-value=0.05 Score=60.38 Aligned_cols=95 Identities=25% Similarity=0.345 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHH-hhcCCC
Q 037733 197 KKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTS-IVAGQN 275 (1450)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~ 275 (1450)
...+++.+.... +-+.++|+.|+|||++++....... ...| ...-++.+...+...++ .++++ +.....
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCC
Confidence 345666665542 4678999999999999999886321 1111 13334555443443333 22221 111000
Q ss_pred CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhH
Q 037733 276 VDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYW 312 (1450)
Q Consensus 276 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~ 312 (1450)
. ...--.+|+.++.+||+.-...+.|
T Consensus 92 -~----------~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 92 -R----------VYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp -E----------EEEEESSSEEEEEEETTT-S---TT
T ss_pred -C----------CCCCCCCcEEEEEecccCCCCCCCC
Confidence 0 0001146889999999966544443
No 373
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.80 E-value=0.26 Score=54.88 Aligned_cols=80 Identities=18% Similarity=0.078 Sum_probs=42.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccC--CcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF--DLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK 290 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 290 (1450)
....+|+|.|..|+||||+|+.+.. ...... ..+..++...-..........- .+......+.-+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHH
Confidence 4568999999999999999987754 222111 1244444443332222222210 0111111244566666666666
Q ss_pred HhCCC
Q 037733 291 QLSGK 295 (1450)
Q Consensus 291 ~l~~k 295 (1450)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65554
No 374
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.73 E-value=0.0037 Score=63.56 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=67.7
Q ss_pred HHhccccccEEEecCCCCCcCCcCccCCCccceeeccCCCcccccccccccCCccEEecCCCCchhHhhhhhhhhcccCc
Q 037733 591 KLLKLQRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHH 670 (1450)
Q Consensus 591 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~ 670 (1450)
++..++...+||++.+++..+-..|+.+..|..|+++.+.|..+|+.++.+..+..+++.. ++....|.++++++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 3446777888888888887777778888888888888888888888888888888887765 567778888888888888
Q ss_pred ccccCCC
Q 037733 671 LKNSNTH 677 (1450)
Q Consensus 671 L~l~~~~ 677 (1450)
++..++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8777665
No 375
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.72 E-value=0.095 Score=57.87 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+.|.|+|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999873
No 376
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.72 E-value=0.33 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 377
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.71 E-value=0.38 Score=52.71 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=34.5
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
....++.|.|.+|+|||++|.++.... . ..-..++||+...+ ..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeCC--HHHHHHH
Confidence 356899999999999999999876532 1 22356888887653 4444444
No 378
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.70 E-value=0.079 Score=59.24 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=44.8
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.++.++++++.+.......+..-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876554566789999999999999999999876
No 379
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.69 E-value=0.11 Score=58.34 Aligned_cols=87 Identities=20% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 288 (1450)
+..+++-|+|+.|+||||||.++.. ..+..-..++|+.....++.... ++++...+. .....++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 3567999999999999999999887 34444456899998887775432 333322110 123334444444
Q ss_pred HHHhCC-CcEEEEEeCCCC
Q 037733 289 NKQLSG-KKFLLVLDDVWN 306 (1450)
Q Consensus 289 ~~~l~~-kr~LlVlDdv~~ 306 (1450)
...++. ..-++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 444443 345889998843
No 380
>PTZ00494 tuzin-like protein; Provisional
Probab=93.63 E-value=2.4 Score=48.60 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=103.5
Q ss_pred CCCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHH
Q 037733 184 LVNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
......+|.|++|-..+.+.|.+.+ ...++++.+.|.-|.||++|.+.....+.. ..++|.+....| -+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hH
Confidence 3455679999999998888887654 356899999999999999999988764332 467788877655 36
Q ss_pred HHHHHHhhcCCCCCCCC-HHHHHHHHH---HHhCCCcEEEEEeCCCCCCh-hhHHhhhccccCCCCCcEEEEecCchHHH
Q 037733 264 KAILTSIVAGQNVDNHD-LNKLQVELN---KQLSGKKFLLVLDDVWNENY-NYWVEFSRPFEAGAQGSKIIVTTRNHEVA 338 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~-~~~~~~~l~---~~l~~kr~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 338 (1450)
+.+.+.++.+.-..-.| ++-+.+..+ ....++.-+||+-==...+. ..+.+. ..+.....-|+|++---.+.+-
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhc
Confidence 67777777654322233 222223222 23456666777642211111 112221 1233344567777754443322
Q ss_pred Hh---cCCCCceeCCCCCHHHHHHHHHhc
Q 037733 339 EI---MGTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 339 ~~---~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
.. .....-|.+.+++.++|.+.-.+.
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 11 122355889999999998877654
No 381
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.59 E-value=0.2 Score=54.64 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccc--cccCCcEEEEEeCCccC-HHHHHHHHHHHhhcCCC------CCCCCHHH-
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRV--QDHFDLKTWTCVSDDFD-VIRLTKAILTSIVAGQN------VDNHDLNK- 283 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~------~~~~~~~~- 283 (1450)
+.+.++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+++... ..++..++...=..... .+......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999998875321 12346788888877653 45555555443111100 01111111
Q ss_pred ----HHHHHHHHh---CCCcEEEEEeCC
Q 037733 284 ----LQVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 284 ----~~~~l~~~l---~~kr~LlVlDdv 304 (1450)
....+.+++ +++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 112233333 378999999999
No 382
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.21 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+.|.+.|.+|+||||+|+++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999987
No 383
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.57 E-value=0.1 Score=53.94 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 384
>PRK06762 hypothetical protein; Provisional
Probab=93.53 E-value=0.058 Score=55.50 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 385
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.52 E-value=0.41 Score=55.70 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 289 (1450)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++. .-+..++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999999873 2222346778776543 33322 223333321110 1233444444442
Q ss_pred HHhCCCcEEEEEeCCC
Q 037733 290 KQLSGKKFLLVLDDVW 305 (1450)
Q Consensus 290 ~~l~~kr~LlVlDdv~ 305 (1450)
+.+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2356678888873
No 386
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.051 Score=55.61 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
-.+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 368999999999999999999984
No 387
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.51 E-value=0.38 Score=52.18 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=31.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 266 (1450)
..++.|.|.+|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4699999999999999987766532 1222 3456666433 344555554
No 388
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.49 E-value=0.28 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 389
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.48 E-value=0.16 Score=53.72 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=60.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHHH-
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV--DNHDLNKLQVELNKQ- 291 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~- 291 (1450)
.+++.|.|+.|.||||+.+.++... +-.+. -.+|.+.. .. -.+...|...+...+.. .......-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999886421 11111 11111111 00 12222333333222110 000111111112222
Q ss_pred -hCCCcEEEEEeCCCCCC-hhh----HHhhhccccCCCCCcEEEEecCchHHHHhcCC
Q 037733 292 -LSGKKFLLVLDDVWNEN-YNY----WVEFSRPFEAGAQGSKIIVTTRNHEVAEIMGT 343 (1450)
Q Consensus 292 -l~~kr~LlVlDdv~~~~-~~~----~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~ 343 (1450)
+..++-|+++|...... ..+ ...+...+.. .|+.+|++|...+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 24568899999984421 111 1122333332 37899999999988876543
No 390
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.47 E-value=0.3 Score=57.29 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcC-----CCCCCCCH--------
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAG-----QNVDNHDL-------- 281 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~-------- 281 (1450)
...++|+|..|+|||||++.+.... .....++|....+..++.++....+...... ...+....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999988632 1222344443333445555544444332111 00011111
Q ss_pred -HHHHHHHHHHhCCCcEEEEEeCC
Q 037733 282 -NKLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 282 -~~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
-..++.++. +++.+|+++||+
T Consensus 242 a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccch
Confidence 112333333 589999999999
No 391
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.73 Score=56.07 Aligned_cols=176 Identities=19% Similarity=0.138 Sum_probs=93.1
Q ss_pred ceecchhHHHHHHHHHhcCCCCC---CCCcEEEEEEcCCCCcHHHHHHHHhccccccccC---CcEEEEEeCCccCHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRN---DGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF---DLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~ 262 (1450)
...+++..+..+.+.+.....++ ...-.++.++|.+|+||||+++.++. +...|+ ++.-.++-+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas--~lg~h~~evdc~el~~~s~------- 472 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS--ELGLHLLEVDCYELVAESA------- 472 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH--HhCCceEeccHHHHhhccc-------
Confidence 34577777777888886543211 12456888999999999999999998 444443 2211111111
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC-----CChh------hHHhhhc--cccCCCCCcEEE
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWN-----ENYN------YWVEFSR--PFEAGAQGSKII 329 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-----~~~~------~~~~~~~--~l~~~~~gs~il 329 (1450)
..+...++..+.+.-+.....|.+-+++- +..+ ....+.. .+....++.-++
T Consensus 473 ---------------~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv 537 (953)
T KOG0736|consen 473 ---------------SHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVV 537 (953)
T ss_pred ---------------chhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEE
Confidence 12222333333333334455555544421 1000 0111111 111123344444
Q ss_pred Eec-CchHHHHhcCC--CCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChH
Q 037733 330 VTT-RNHEVAEIMGT--VPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 330 vTt-r~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PL 388 (1450)
.|| +.+++...+.. ...+.+..+++++-.++|+-+.....-..+.-.+.++++|.|.-+
T Consensus 538 ~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 538 ATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred EeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCH
Confidence 444 33444333322 256788999999999999877643322333445667788887644
No 392
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.44 E-value=0.9 Score=55.89 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=35.2
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++|+...+.++.+.+.... . .-..|.|+|.+|+|||++|+.+.+.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~---~-~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS---R-SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh---c-cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58999888888777764321 1 2245789999999999999999874
No 393
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.43 E-value=0.24 Score=57.76 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHHHHHhhcCCC------CCCCCHH----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAILTSIVAGQN------VDNHDLN---- 282 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~------~~~~~~~---- 282 (1450)
+...++|+|..|+|||||++.++... ..+.++.+-+++... +.++..+++..-..... .+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998632 224566666666553 34455554333111100 0111111
Q ss_pred -----HHHHHHHHHhCCCcEEEEEeCC
Q 037733 283 -----KLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 283 -----~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
..++.++. +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd--~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRD--QGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEEcCh
Confidence 12333333 589999999999
No 394
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.43 E-value=0.069 Score=68.28 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=52.4
Q ss_pred CCcEEEEEeCCCCC-ChhhHHhh----hccccCCCCCcEEEEecCchHHHHhcCCCCceeCCCCCHH-HHHHHHHhcc-C
Q 037733 294 GKKFLLVLDDVWNE-NYNYWVEF----SRPFEAGAQGSKIIVTTRNHEVAEIMGTVPPHPLKELSDN-DCLAIFAQHS-L 366 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~-~~~~~~~~----~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~-~ 366 (1450)
.++-|+++|..-.. +......+ ...+. ..|+.+|+||...++.........+.-..+..+ +... |..+. .
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEECC
Confidence 47899999998653 22222222 22232 357899999999887654322221111111111 1110 11111 1
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCC
Q 037733 367 GPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGK 400 (1450)
Q Consensus 367 ~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~ 400 (1450)
+. .-..-|-+|++++ |+|-.|.--|..+...
T Consensus 478 G~--~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 478 GI--PGESYAFEIAQRY-GIPHFIIEQAKTFYGE 508 (771)
T ss_pred CC--CCCcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 11 1134566677766 7888888888776554
No 395
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.41 E-value=0.074 Score=57.21 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
-|.|+|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.40 E-value=0.12 Score=53.57 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.39 E-value=0.5 Score=59.30 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC--HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD--VIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
.+|++++|+.|+||||.+..++...........+..+... .+. ..+-++...+.++.... ...+..++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 5799999999999999999888732212111234444432 332 33444445555543332 33456666665654 3
Q ss_pred CCCcEEEEEeCCC
Q 037733 293 SGKKFLLVLDDVW 305 (1450)
Q Consensus 293 ~~kr~LlVlDdv~ 305 (1450)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 444 377788775
No 398
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.38 E-value=0.31 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.38 E-value=0.36 Score=56.65 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC-ccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD-DFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
+..+++++|+.|+||||++..++.........+.+.++.... .....+-+....+.++.... ...+..+....+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKDIADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCCHHHHHHHHHH-h
Confidence 457999999999999999988876321121223344443322 11222223333444433222 23344444433333 4
Q ss_pred CCCcEEEEEeCCC
Q 037733 293 SGKKFLLVLDDVW 305 (1450)
Q Consensus 293 ~~kr~LlVlDdv~ 305 (1450)
+++ -++++|-.-
T Consensus 268 ~~~-d~VLIDTaG 279 (420)
T PRK14721 268 RGK-HMVLIDTVG 279 (420)
T ss_pred cCC-CEEEecCCC
Confidence 443 456677663
No 400
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.37 E-value=0.35 Score=48.83 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEE---EEEeCCccCHHHHHHHHHHHhh-----cCCCCCCCC-------
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKT---WTCVSDDFDVIRLTKAILTSIV-----AGQNVDNHD------- 280 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~------- 280 (1450)
..|-|++..|.||||.|..++-.. ....+ .+. |+...........+... .+. ........+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 578888889999999998887632 12222 222 22222122333333332 111 000000011
Q ss_pred HHHHHHHHHHHhCCCcE-EEEEeCCCCC---ChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 281 LNKLQVELNKQLSGKKF-LLVLDDVWNE---NYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 281 ~~~~~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
..+.....++.+...+| ++|||.+-.. ..-..+.+...+.....+..||+|-|..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233334455555554 9999998321 1122345555555556678999999985
No 401
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.42 Score=49.63 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHHHHHhCCCcEEEEEeCCCCC-ChhhHHhhhccccC-CCCCcEEEEecCchHHHHhcCCCCc
Q 037733 286 VELNKQLSGKKFLLVLDDVWNE-NYNYWVEFSRPFEA-GAQGSKIIVTTRNHEVAEIMGTVPP 346 (1450)
Q Consensus 286 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v~~~~~~~~~ 346 (1450)
..+.+.+-=++-+.|||..++- +.+....+...+.. ...|+-++|.|..+.++.......+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 3444444556779999998763 22333333222221 2347778888888888887654433
No 402
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.36 E-value=0.19 Score=57.06 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+.+.|++|+||||+|+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999874
No 403
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.31 E-value=0.26 Score=50.06 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=61.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc--CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF--DVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1450)
.+++|+|..|.|||||++.++... ......+++...... ...+.. ..+..-.. -..-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHH----hceEEEee--CCHHHHHHHHHHHHHh
Confidence 689999999999999999998732 123444444321111 111111 11111000 1111223334556666
Q ss_pred CCcEEEEEeCCCCC-ChhhHHhhhccccCC-CCCcEEEEecCchHHHHhc
Q 037733 294 GKKFLLVLDDVWNE-NYNYWVEFSRPFEAG-AQGSKIIVTTRNHEVAEIM 341 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~ilvTtr~~~v~~~~ 341 (1450)
.++-++++|..-.. +......+...+... ..+..++++|.+.......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 67889999988542 222333333333221 1256788888887665543
No 404
>PRK03839 putative kinase; Provisional
Probab=93.27 E-value=0.058 Score=56.32 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999983
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.26 E-value=0.12 Score=49.68 Aligned_cols=40 Identities=23% Similarity=0.129 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++.+++.+.|...- ....+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555554321 12358999999999999999999974
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.24 E-value=0.085 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 407
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.18 E-value=0.78 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 408
>PRK00625 shikimate kinase; Provisional
Probab=93.17 E-value=0.061 Score=55.07 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.++||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 409
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.16 E-value=0.37 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+..+|.|+|.+|+|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 410
>PRK06217 hypothetical protein; Validated
Probab=93.14 E-value=0.13 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.|.|.|++|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999974
No 411
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.14 E-value=0.2 Score=59.02 Aligned_cols=51 Identities=27% Similarity=0.261 Sum_probs=35.1
Q ss_pred CcceecchhHHHHHHHHHhc-------CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 187 KTEVYGREIEKKQVIDLLLR-------DDL---RNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~-------~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+..+||.+..++.+...+.. ... ......+-+.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34689999988877555421 000 0001235688999999999999999986
No 412
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.12 E-value=0.42 Score=56.09 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
....+|.++|.+|+||||+|..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999988763
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.11 E-value=0.46 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999875
No 414
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.02 E-value=0.14 Score=48.16 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=32.6
Q ss_pred eecchhHHHH----HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 190 VYGREIEKKQ----VIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 190 ~vGr~~~~~~----l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++|-.-..+. |.+.+... ...++-|++.+|.+|+|||-+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 5555544444 44444333 4567899999999999999988888764
No 415
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.01 E-value=0.6 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999873
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.00 E-value=0.56 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+..|++++|+.|+||||.+..++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3579999999999999999999873
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.98 E-value=0.3 Score=54.18 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD 256 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1450)
....++.|.|.+|+|||++|.+++... .+ .=..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecCC
Confidence 356799999999999999999986632 11 2246788887643
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.96 E-value=0.082 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 419
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.94 E-value=0.55 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 420
>PRK04040 adenylate kinase; Provisional
Probab=92.92 E-value=0.079 Score=55.27 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 421
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.069 Score=51.78 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVA 272 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1450)
+|.|.|++|+||||+|+.++++.-.. .+ +.-.+++++++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCC
Confidence 68999999999999999999842211 12 233567777777654
No 422
>PRK15453 phosphoribulokinase; Provisional
Probab=92.85 E-value=0.53 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=2.6 Score=45.31 Aligned_cols=175 Identities=18% Similarity=0.186 Sum_probs=92.2
Q ss_pred ceecchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDL------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 262 (1450)
++-|-+..++.+.+...-+-. ......+-|.++|++|.||+-||++|+.... . -|++||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH------
Confidence 356777777777765532110 0223478899999999999999999998432 2 23344432
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCC------C-hhhHHh----hhcccc---CCCCCcE
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVELNKQL-SGKKFLLVLDDVWNE------N-YNYWVE----FSRPFE---AGAQGSK 327 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~------~-~~~~~~----~~~~l~---~~~~gs~ 327 (1450)
++.....+ ..+.+...+.+.- .+|+-.|.+|.|+.. . .+.-.. +...+. ....|.-
T Consensus 201 --DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 201 --DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred --HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 11111111 1233444444433 468889999998541 0 111111 222222 2334555
Q ss_pred EEEecCchHHHHhc---CCCCceeCCCCCHHHHH-HHHHhccCCCCc-hhHHHHHHHHHHhCCC
Q 037733 328 IIVTTRNHEVAEIM---GTVPPHPLKELSDNDCL-AIFAQHSLGPRE-LLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 328 ilvTtr~~~v~~~~---~~~~~~~l~~L~~~~~~-~lf~~~~~~~~~-~~~~~~~~i~~~~~G~ 386 (1450)
|+-.|..+=+.... .-...+-+ ||.+..|. .+|.-+...... .-++-.++++++..|.
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 66677665333211 11122222 56666664 567666654333 3345566777777764
No 424
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.82 E-value=0.24 Score=57.42 Aligned_cols=63 Identities=25% Similarity=0.163 Sum_probs=46.4
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
++|+++.+..+...+..+. -+.+.|.+|+|||+||+.++. .... ...++.+.......++...
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCc
Confidence 8899888888887776653 478999999999999999998 3332 3455666666665555443
No 425
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.73 E-value=1.2 Score=49.33 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc------------ccCCcEEEEEeCCccCHHHHH
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ------------DHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
.-+++...+..+. -.....++|+.|+||+++|..++...--. .|-| ..|+.-...
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~------- 71 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGK------- 71 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCC-------
Confidence 3455666664432 24577899999999999999887632100 0111 111110000
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHH
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQL-----SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEV 337 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v 337 (1450)
...-..++.. .+.+.+ .+++=++|+|+++..+.+.+..+...+..-..++.+|++|.. ..+
T Consensus 72 ------------~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~l 138 (290)
T PRK05917 72 ------------GRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRL 138 (290)
T ss_pred ------------CCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhC
Confidence 0001222222 222222 355668899999888888888888877665566666555554 444
Q ss_pred HHh-cCCCCceeCCCC
Q 037733 338 AEI-MGTVPPHPLKEL 352 (1450)
Q Consensus 338 ~~~-~~~~~~~~l~~L 352 (1450)
... ......+.+.++
T Consensus 139 l~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 139 PPTIRSRSLSIHIPME 154 (290)
T ss_pred cHHHHhcceEEEccch
Confidence 322 222345566554
No 426
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.28 Score=55.35 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 289 (1450)
...+|.|-|-+|||||||..+++. +....- .+.+|+-.+.. .++ +--+++++..... ...+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 457999999999999999999988 444333 67777655433 222 2223444432211 2345555555554
Q ss_pred HHhCCCcEEEEEeCCCC
Q 037733 290 KQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~l~~kr~LlVlDdv~~ 306 (1450)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 4 6888999999854
No 427
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.66 E-value=0.065 Score=30.79 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=6.2
Q ss_pred ccceeeccCCCccccc
Q 037733 620 YLRYLNLSGTGIRTLP 635 (1450)
Q Consensus 620 ~Lr~L~L~~~~i~~LP 635 (1450)
+||.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 428
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.65 E-value=0.073 Score=56.58 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 037733 216 SVVPIVGMGGLGKTTLARHVY 236 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~ 236 (1450)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 429
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.64 E-value=0.24 Score=58.55 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHHHHHhhcCC------CCCCCCHH----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAILTSIVAGQ------NVDNHDLN---- 282 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 282 (1450)
+...++|.|.+|+|||||+.++++... +.+-+.++++-+++... +.++..++...-.... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446789999999999999998887432 22557777777766543 4555555544211110 00111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEeCC
Q 037733 283 -KLQVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 283 -~~~~~l~~~l---~~kr~LlVlDdv 304 (1450)
.....+.+++ +++.+|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1122333443 489999999999
No 430
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.64 E-value=0.29 Score=61.47 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 288 (1450)
...+++-|.|.+|+||||||.+++... ...=..++|+...+.++.. .+++++.... ......+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 356899999999999999998876532 2223567899888777743 4455543221 1233344455555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 037733 289 NKQLS-GKKFLLVLDDVW 305 (1450)
Q Consensus 289 ~~~l~-~kr~LlVlDdv~ 305 (1450)
...++ ++--|||+|.+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 356689999984
No 431
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=0.48 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 432
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.62 E-value=0.064 Score=56.85 Aligned_cols=42 Identities=26% Similarity=0.255 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccC--------CcEEEEEeCCcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHF--------DLKTWTCVSDDF 257 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~ 257 (1450)
.++.|.|++|+||||++..++........| ..++|+......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 478899999999999999987643322222 367888776654
No 433
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.62 E-value=0.41 Score=56.44 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc-CHHHHHHHHHHHhhcCC------CCCCCCHH----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF-DVIRLTKAILTSIVAGQ------NVDNHDLN---- 282 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 282 (1450)
+...++|.|.+|+|||||+.+++..... ++=+.++++-+++.. .+.++..++...-.... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4467899999999999999988763221 111356677776554 35566666554321110 00111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEeCC
Q 037733 283 -KLQVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 283 -~~~~~l~~~l---~~kr~LlVlDdv 304 (1450)
.....+.+++ +++.+|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1122334444 679999999999
No 434
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.62 E-value=0.17 Score=53.98 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD 239 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 239 (1450)
+..++++.+... .++..+|+|.|+||+|||||..++....
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 455666666543 2456899999999999999999988743
No 435
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.62 E-value=0.85 Score=51.34 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAI 266 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 266 (1450)
++++.+..- .+...++|.|..|+|||+|++++++.. +-+.++++-+++... +.+++.++
T Consensus 146 rvID~l~Pi-----~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPV-----VKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhccccc-----cCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 455555432 234588999999999999999999842 335678888876653 45555554
No 436
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.57 E-value=0.11 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+|.|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999973
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.54 E-value=0.6 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+..+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999874
No 438
>PRK05973 replicative DNA helicase; Provisional
Probab=92.51 E-value=0.5 Score=50.85 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
...++.|.|.+|+|||++|.+++.... + .=..+++++...+ ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHH
Confidence 346889999999999999999876432 2 2235667766554 3444444
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.51 E-value=0.8 Score=50.52 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc-CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF-DVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1450)
..+++++|.+|+||||+++.+... ....=..+.+++..... ....-++.....+..+.. ...+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 368999999999999999988763 22111234555543221 111122222222221111 22345555554443322
Q ss_pred -CCcEEEEEeCCCCC
Q 037733 294 -GKKFLLVLDDVWNE 307 (1450)
Q Consensus 294 -~kr~LlVlDdv~~~ 307 (1450)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24568889988543
No 440
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=92.50 E-value=0.097 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+++.|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999853
No 441
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=4.7 Score=45.00 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=47.3
Q ss_pred CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHHHhc-CCCCceeCCCCCHHHHHHHHHhc
Q 037733 293 SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVAEIM-GTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
.+++-++|+||++......+..+...+..-..++.+|++|.+ ..+...+ .....+.+.+ +.++..+.+...
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQK 174 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHHc
Confidence 356678999999988888888888887765566666666654 3444322 2235677766 666666666543
No 442
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.48 E-value=0.31 Score=50.02 Aligned_cols=118 Identities=17% Similarity=0.060 Sum_probs=60.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC---ccCHHHHHHHHH--HHh--hcCCCCCCCC-------H
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD---DFDVIRLTKAIL--TSI--VAGQNVDNHD-------L 281 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~l--~~~~~~~~~~-------~ 281 (1450)
..|-|+|..|-||||.|..++-. ...+=-.+..+..-. .......++.+- ... +........+ .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 57889999999999999888763 222111233333322 223333333210 000 0000000011 1
Q ss_pred HHHHHHHHHHhCCCc-EEEEEeCCCCC---ChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 282 NKLQVELNKQLSGKK-FLLVLDDVWNE---NYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 282 ~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
.+.....++.+.+.+ =++|||.+-.. ..-..+++...+.....+..||+|-|..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333445554544 49999998331 1123445555555556678999999985
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.47 E-value=0.14 Score=57.15 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=36.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF 257 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 257 (1450)
+..+++.|+|.+|+|||++|.++.. +...+...++||+..+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 4568999999999999999999988 455568889999987653
No 444
>PRK15115 response regulator GlrR; Provisional
Probab=92.43 E-value=0.73 Score=56.25 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=32.7
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++|+...+.++.+...... .. -..|.|.|.+|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a---~~-~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA---QS-DVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc---cC-CCeEEEEcCCcchHHHHHHHHHHh
Confidence 47788777777666553321 11 235679999999999999999874
No 445
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=1.8 Score=50.03 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=40.7
Q ss_pred CcEEEE-ecCchHHHHh--c--CCC-CceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHh-hh
Q 037733 325 GSKIIV-TTRNHEVAEI--M--GTV-PPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGG-LL 397 (1450)
Q Consensus 325 gs~ilv-Ttr~~~v~~~--~--~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~-~L 397 (1450)
+-|||| ||...+-... + |.. ..+.+.-=+.+....||.++...+. ...++.+|.+...|.-+.=..+|. ++
T Consensus 337 ~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 337 DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHh
Confidence 446655 7765543211 1 222 3467777888888899998876543 234555555555554443344444 34
Q ss_pred cCC
Q 037733 398 RGK 400 (1450)
Q Consensus 398 ~~~ 400 (1450)
..+
T Consensus 415 ~~~ 417 (457)
T KOG0743|consen 415 KNK 417 (457)
T ss_pred hcc
Confidence 443
No 446
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.36 E-value=0.13 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 447
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.36 E-value=0.14 Score=53.58 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=56.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHHHhCC
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV--DNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~ 294 (1450)
++.|+|+.|.||||+.+.+.-.. +-.+-...+|.. . .. -....+++..+...... .......-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~--~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAE--S-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeeh--h-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 46799999999999999987321 111111111110 0 00 00000111111111000 111222222234444443
Q ss_pred --CcEEEEEeCCCCCC-hhhH----HhhhccccCCCCCcEEEEecCchHHHHhc
Q 037733 295 --KKFLLVLDDVWNEN-YNYW----VEFSRPFEAGAQGSKIIVTTRNHEVAEIM 341 (1450)
Q Consensus 295 --kr~LlVlDdv~~~~-~~~~----~~~~~~l~~~~~gs~ilvTtr~~~v~~~~ 341 (1450)
++-++++|..-... ...- ..+...+.. ..++.+|++|...++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 78999999985431 1111 122222221 2367899999998877654
No 448
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.31 E-value=0.099 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...|.++|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999983
No 449
>PRK04328 hypothetical protein; Provisional
Probab=92.30 E-value=0.36 Score=53.17 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF 257 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 257 (1450)
...++.|.|.+|+|||+||.++.... . ..-...+|++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCH
Confidence 45799999999999999999977632 2 223567888876643
No 450
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.30 E-value=0.36 Score=47.05 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV 253 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 253 (1450)
-+.|+|-||+||+++.+.+|.- .....|...+||..
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 4569999999999999999974 34455677888754
No 451
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.30 E-value=1 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999863
No 452
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.30 E-value=0.62 Score=49.55 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEEeCCCCC-ChhhHH-hhhccccCCC-C-CcEEEEecCchHHHH
Q 037733 287 ELNKQLSGKKFLLVLDDVWNE-NYNYWV-EFSRPFEAGA-Q-GSKIIVTTRNHEVAE 339 (1450)
Q Consensus 287 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~-~~~~~l~~~~-~-gs~ilvTtr~~~v~~ 339 (1450)
.+.+.+..++-++++|+.-.. +..... .+...+.... . |..||++|.+.+...
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 455667788899999998543 222233 3333333222 2 567888888877664
No 453
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.29 E-value=1 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 454
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.29 E-value=0.32 Score=57.80 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=47.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEE-EEEeCCccC-HHHHHHHHHHHhhcCCCCCCCC----HHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKT-WTCVSDDFD-VIRLTKAILTSIVAGQNVDNHD----LNKLQVE 287 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~----~~~~~~~ 287 (1450)
+.....|+|++|+|||||++.+++... ..+-++.+ .+-+.+... +.++.+.+-..+.......... ...+...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 446788999999999999999998321 11223333 444554433 3333222211111111111111 1122223
Q ss_pred HHHHh--CCCcEEEEEeCC
Q 037733 288 LNKQL--SGKKFLLVLDDV 304 (1450)
Q Consensus 288 l~~~l--~~kr~LlVlDdv 304 (1450)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 33344 689999999999
No 455
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.28 E-value=1.1 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|.|||||++.++..
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.26 E-value=0.086 Score=56.04 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 457
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.26 E-value=0.16 Score=53.31 Aligned_cols=23 Identities=43% Similarity=0.510 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|..|+||||||+.++.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 458
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.23 E-value=0.88 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999874
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.23 E-value=0.79 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999986
No 460
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.21 E-value=1.5 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|..|.|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 461
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.19 E-value=0.2 Score=56.39 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
.+++.+.|.|||||||+|.+.+- ........+.-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999998665 2333334477777766666555444
No 462
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.19 E-value=0.089 Score=55.17 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.12 E-value=0.11 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 464
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.12 E-value=0.86 Score=55.66 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=33.5
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++|+...++++...+.... .... -|.|.|..|+||+++|+.+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~~-~vli~Ge~GtGK~~lA~~ih~ 184 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSDI-TVLLLGESGTGKEVLARALHQ 184 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCCC-CEEEECCCCcCHHHHHHHHHH
Confidence 47888888888777775421 1223 355999999999999999986
No 465
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.54 Score=49.16 Aligned_cols=55 Identities=27% Similarity=0.218 Sum_probs=37.6
Q ss_pred ceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC
Q 037733 189 EVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF 245 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 245 (1450)
++=|-.++++++.+...-+-. -+-+.++-|..+|++|.|||-+|++|++ +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 345677777777776533211 0223456788999999999999999999 555444
No 466
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.10 E-value=0.32 Score=53.77 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
|.++|++|+||||+|+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 467
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.63 Score=56.41 Aligned_cols=54 Identities=30% Similarity=0.328 Sum_probs=37.0
Q ss_pred cceecchhHHH---HHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccc
Q 037733 188 TEVYGREIEKK---QVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV 241 (1450)
Q Consensus 188 ~~~vGr~~~~~---~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 241 (1450)
.++-|.|+.++ ++++.|.++.. -+..-++-|..+|++|.|||.||++++.+..+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 45778876555 55666654321 01133567889999999999999999986443
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.08 E-value=0.22 Score=57.85 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
..+.|.|+.|.||||+.+.+.+ .+..+....++. +.++... ..... ..+..... ...+.......++..++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 5899999999999999999887 233334444443 2222111 10000 00000111 0111233566677888888
Q ss_pred cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHH
Q 037733 296 KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVA 338 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 338 (1450)
+=.|++|.+.+. +.+...... ...|..|+.|.....+.
T Consensus 196 pd~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 999999999754 444432222 23455677777665443
No 469
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.05 E-value=0.59 Score=55.04 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhccccc-----cccCCcEEEEEeCCccCHHHHHHHHHHHhh-cCCC------CCCCC
Q 037733 214 GFSVVPIVGMGGLGKTTLA-RHVYNDDRV-----QDHFDLKTWTCVSDDFDVIRLTKAILTSIV-AGQN------VDNHD 280 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------~~~~~ 280 (1450)
+...++|.|..|+|||+|| ..+.+...+ .++-+.++++-+++......-..+.+++-+ .... .+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 556664322 123456788888877643322333333322 1100 01111
Q ss_pred H---------HHHHHHHHHHhCCCcEEEEEeCCCC
Q 037733 281 L---------NKLQVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 281 ~---------~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
. -.+++.+++ +++.+|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 1 123334443 58999999999943
No 470
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.03 E-value=0.12 Score=51.12 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 037733 217 VVPIVGMGGLGKTTLARHVY 236 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~ 236 (1450)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 471
>COG4240 Predicted kinase [General function prediction only]
Probab=92.02 E-value=0.52 Score=48.40 Aligned_cols=84 Identities=18% Similarity=0.068 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhh----cCCCCCCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIV----AGQNVDNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~~l 288 (1450)
+++-+++|.|+-|+||||+|..+++....+.. ..++..+..+-+-...-...++++.. ........|..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999984332222 45666555544433333444445431 11122456677677777
Q ss_pred HHHhCCCcE
Q 037733 289 NKQLSGKKF 297 (1450)
Q Consensus 289 ~~~l~~kr~ 297 (1450)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777666643
No 472
>PRK13947 shikimate kinase; Provisional
Probab=92.01 E-value=0.1 Score=53.95 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999997
No 473
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.00 E-value=0.24 Score=61.51 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=53.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+++.. ...+++..+|... ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45899999888888777543 358899999999999999998742 2334677888665 3335666777776
Q ss_pred HHhh
Q 037733 268 TSIV 271 (1450)
Q Consensus 268 ~~l~ 271 (1450)
.+.+
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6544
No 474
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.96 E-value=0.21 Score=51.90 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV 259 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1450)
.|+|+|-||+||||+|..++....-++.|+ +.-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988665321222243 444555555553
No 475
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.28 Score=50.78 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=35.0
Q ss_pred ceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 189 EVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++=|.+..++++.+...-+-. .+-+.++-|.++|++|.|||.||++|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 355777777777666532110 12234667889999999999999999994
No 476
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.95 E-value=0.15 Score=53.33 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV 253 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 253 (1450)
.+++.|+|+.|+|||||++.+.. ....+|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999998 45566755555443
No 477
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.94 E-value=0.12 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 478
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.91 E-value=0.25 Score=58.11 Aligned_cols=90 Identities=13% Similarity=0.216 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHHHHHhhcCC------CCCCCCHH----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAILTSIVAGQ------NVDNHDLN---- 282 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~---- 282 (1450)
+...++|.|.+|+|||+|+.++..+.. +.+-+.++|+-+++... ..++..++...-.... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999999887532 23346788888876653 4555555544211110 00111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEeCC
Q 037733 283 -KLQVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 283 -~~~~~l~~~l---~~kr~LlVlDdv 304 (1450)
.....+.+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1122334443 468999999999
No 479
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=91.91 E-value=1.2 Score=48.56 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=67.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
+.+.++|+.|+|||+-++.+++. ....+.+..+..+....+...+......... .........+...+++.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHccC
Confidence 47889999999999999999983 2233334566666766777666666554433 34455566666777888
Q ss_pred cEEEEEeCCCCCChhhHHhhhcccc
Q 037733 296 KFLLVLDDVWNENYNYWVEFSRPFE 320 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~~~~~l~ 320 (1450)
.-+|+.|....-....++.+.....
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHH
Confidence 8999999987766666776655443
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.89 E-value=0.24 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+.|+|..|.||||+++.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 481
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.86 E-value=0.53 Score=50.73 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 482
>PRK08149 ATP synthase SpaL; Validated
Probab=91.85 E-value=0.63 Score=54.58 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=48.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc-cCHHHHHHHHHHHhhcCC------CCCCCCH-----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD-FDVIRLTKAILTSIVAGQ------NVDNHDL----- 281 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~----- 281 (1450)
+...++|+|..|+|||||+..++.... -+.++...+... .++.++..+......... ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346889999999999999999987321 233333334333 345555555554322110 0011111
Q ss_pred ----HHHHHHHHHHhCCCcEEEEEeCC
Q 037733 282 ----NKLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 282 ----~~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
-..++.++. ++|++|+++||+
T Consensus 226 ~~~a~tiAE~fr~--~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRD--QGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEccch
Confidence 112233332 589999999999
No 483
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=1.9 Score=52.23 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=91.1
Q ss_pred ceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
++=|..+.++.+.+.+.-+.. ..-....-|.++|++|.|||-||-+++.... .-+++|-++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH-----
Confidence 345666666666666643311 0111234578999999999999999987321 234666543
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHHhhhccccC--CCCCcEE
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-----------YNYWVEFSRPFEA--GAQGSKI 328 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~~l~~--~~~gs~i 328 (1450)
+++....+ .+.+.....+.+.-..|++.+.+|..++.. .....++...+.. +-.|.-|
T Consensus 736 ---ElL~KyIG------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ---ELLSKYIG------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred ---HHHHHHhc------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 22222221 223445555566667899999999986631 1122333333332 2346666
Q ss_pred EE-ecCchHHHHhc---CCC-CceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 329 IV-TTRNHEVAEIM---GTV-PPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 329 lv-Ttr~~~v~~~~---~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
+- |||..-+...+ |.. +.+.-+.-++.|-.++|...+-.-.-...-..+.++.+.+|.-
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFT 870 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCc
Confidence 65 55654332221 211 2233333445555666654432111111223445566666654
No 484
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.83 E-value=1 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|.|+.|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 485
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.81 E-value=0.2 Score=54.05 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHH
Q 037733 198 KQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 263 (1450)
.+++..+.. ..++..+|+|.|.||+|||||..++....+-+++=-.++-|.-|.+++--.++
T Consensus 38 ~~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 345555543 34567899999999999999999887754334443344555556666543333
No 486
>PLN02348 phosphoribulokinase
Probab=91.79 E-value=0.79 Score=52.67 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++..+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 487
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.77 E-value=0.12 Score=66.32 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=81.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccc--------------cccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCC
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRV--------------QDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNH 279 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 279 (1450)
..+++.|+|+.+.||||+.+.+.-..-. -..|+ .++..++...++..-......
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~----------- 393 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSG----------- 393 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHH-----------
Confidence 3578999999999999999888532100 01111 122222222221111111000
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEeCCCCC-ChhhHHhh----hccccCCCCCcEEEEecCchHHHHhcCCCCceeCCCCC-
Q 037733 280 DLNKLQVELNKQLSGKKFLLVLDDVWNE-NYNYWVEF----SRPFEAGAQGSKIIVTTRNHEVAEIMGTVPPHPLKELS- 353 (1450)
Q Consensus 280 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~~----~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~- 353 (1450)
........++ .+ ..+-|+++|..-.. +......+ ...+. ..|+.+|+||...++.........+.-..+.
T Consensus 394 ~m~~~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 394 HMTNIVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred HHHHHHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 1111222222 22 47789999998653 22222222 22232 3478999999998887654332221111111
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCC
Q 037733 354 DNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGK 400 (1450)
Q Consensus 354 ~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~ 400 (1450)
+++......+...+. .-..-|-.|++.+ |+|-.+.--|..+...
T Consensus 470 d~~~l~~~Ykl~~G~--~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 470 DEETLRPTYRLLIGI--PGKSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred ecCcCcEEEEEeeCC--CCCcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 111111000111111 1234566677766 7888888888776554
No 488
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.76 E-value=0.31 Score=53.97 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.++.|.|..|.||||+++++... +.. ....+ +.+.++.... ... ..++.... .........++..++..
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~-~~q~~v~~----~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPG-INQVQVNE----KAGLTFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCC-ceEEEeCC----cCCcCHHHHHHHHhccC
Confidence 58999999999999999988763 221 11111 2232221110 000 01111111 00113556677788888
Q ss_pred cEEEEEeCCCCC
Q 037733 296 KFLLVLDDVWNE 307 (1450)
Q Consensus 296 r~LlVlDdv~~~ 307 (1450)
+=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 889999999775
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.76 E-value=0.13 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999973
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.75 E-value=0.15 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+..+|+|+|++|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 491
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.71 E-value=0.21 Score=53.73 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=37.5
Q ss_pred cceecchhHHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-RNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|-.-.++.|+..+.+--. +...++-|++.+|.+|+||.-.|+.++++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 4467766666666666643211 14567899999999999999999999875
No 492
>PRK13949 shikimate kinase; Provisional
Probab=91.70 E-value=0.12 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
-|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999973
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.69 E-value=0.85 Score=51.61 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC-ccCHHHHHHHHHHHhhcCC------CCCCCCH------
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD-DFDVIRLTKAILTSIVAGQ------NVDNHDL------ 281 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~~~~------ 281 (1450)
...++|+|..|+|||||.+.+..... -+..+..-+.. ..++.++..+....-.... ..+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987422 12333344432 3345555554443321110 0011111
Q ss_pred ---HHHHHHHHHHhCCCcEEEEEeCC
Q 037733 282 ---NKLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 282 ---~~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
-..++.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccc
Confidence 122333333 589999999998
No 494
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.67 E-value=1.6 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 495
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.66 E-value=0.64 Score=54.64 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcC-------CCCCCCCHH----
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAG-------QNVDNHDLN---- 282 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 282 (1450)
+...++|+|..|+|||||++.++..... ...++...-.+.....++..+.+..-+.. ...+.....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3468899999999999999999874321 11233222223345556655554432111 110111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCCCC
Q 037733 283 KLQVELNKQL--SGKKFLLVLDDVWN 306 (1450)
Q Consensus 283 ~~~~~l~~~l--~~kr~LlVlDdv~~ 306 (1450)
..+..+.+++ +++++||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 1112222222 58999999999943
No 496
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.64 E-value=0.5 Score=60.40 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=69.8
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
.++|....+.++.+....... .. .-|.|+|..|+||+++|+.+.+... ..-...+.|++..-. ...+..+++.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~---~~-~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elfg 398 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAK---SS-FPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFLG 398 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhC---cC-CCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhcC
Confidence 488999888888877755321 12 2367999999999999999987321 111233444544332 2222233332
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 037733 269 SIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVTTRN 334 (1450)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtr~ 334 (1450)
....... .... ..+ -....=.|+||+|..........+...+..+. -..|||.||..
T Consensus 399 ~~~~~~~--~~~~----g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 399 SDRTDSE--NGRL----SKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCcCcc--CCCC----Cce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2111000 0000 000 01123458999998776666666655543221 13577777664
No 497
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.61 E-value=0.2 Score=49.30 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD 255 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1450)
++|.|+|..|+|||||++.+.+.. .+..+...++.....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999843 234455555555544
No 498
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.59 E-value=0.95 Score=49.37 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD 256 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1450)
...++.|.|.+|+||||+|.+++... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999999876532 1 22346788877543
No 499
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.57 E-value=0.12 Score=51.90 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 500
>PF13245 AAA_19: Part of AAA domain
Probab=91.54 E-value=0.3 Score=42.07 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 037733 216 SVVPIVGMGGLGKTTLARHVY 236 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~ 236 (1450)
+++.|.|++|.|||+++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578889999999995544443
Done!