Query 037733
Match_columns 1450
No_of_seqs 1018 out of 5938
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.1E-52 2.4E-56 539.0 33.3 672 596-1437 50-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-46 3.8E-51 490.1 28.4 632 588-1394 69-741 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 5.3E-46 1.8E-50 460.6 24.2 315 191-525 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-41 5.3E-46 439.2 41.3 365 1038-1430 248-636 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-39 1.2E-43 417.1 36.5 327 1038-1396 272-625 (680)
6 3t6q_A CD180 antigen; protein- 100.0 3.8E-38 1.3E-42 401.8 38.3 248 1039-1320 255-510 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-37 4.5E-42 396.8 30.5 275 1039-1324 279-561 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 6.7E-37 2.3E-41 390.3 36.0 240 1040-1320 263-507 (606)
9 1vt4_I APAF-1 related killer D 100.0 5.2E-38 1.8E-42 385.6 22.0 285 190-516 130-436 (1221)
10 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-37 2E-41 390.8 28.5 515 596-1324 32-559 (606)
11 3sfz_A APAF-1, apoptotic pepti 100.0 5.5E-36 1.9E-40 417.0 25.2 312 185-523 121-452 (1249)
12 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-34 2.5E-38 373.5 43.4 266 1037-1325 289-562 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.2E-33 1.1E-37 354.0 32.4 269 1040-1323 259-531 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 2E-32 6.7E-37 359.9 36.8 242 1038-1301 314-562 (844)
15 1z6t_A APAF-1, apoptotic prote 100.0 2.5E-33 8.4E-38 354.5 24.8 305 187-520 123-449 (591)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-32 8E-37 344.0 30.6 299 1038-1394 196-511 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 4.6E-32 1.6E-36 343.4 26.7 248 1039-1303 283-535 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-31 1.2E-35 330.3 26.3 248 1038-1324 220-482 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-31 1.8E-35 331.7 24.2 98 596-695 26-128 (549)
20 4eco_A Uncharacterized protein 100.0 5.9E-31 2E-35 333.7 21.5 343 1037-1417 205-601 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 4.1E-30 1.4E-34 329.2 22.8 341 1037-1417 447-841 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 1E-29 3.4E-34 327.2 26.4 250 1038-1325 328-582 (635)
23 2z7x_B TOLL-like receptor 1, v 100.0 7E-30 2.4E-34 318.6 22.7 226 1166-1422 247-486 (520)
24 4eco_A Uncharacterized protein 100.0 5E-30 1.7E-34 325.2 20.6 345 1054-1447 198-599 (636)
25 4ecn_A Leucine-rich repeat pro 100.0 1.9E-29 6.5E-34 323.0 23.4 315 1083-1447 489-839 (876)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-28 1.3E-32 312.3 32.6 154 1166-1320 397-552 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-28 9.8E-33 306.3 29.0 155 1166-1324 353-511 (562)
28 3v47_A TOLL-like receptor 5B a 100.0 3.4E-28 1.2E-32 298.1 24.2 351 1037-1418 29-410 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 5.8E-28 2E-32 291.8 19.9 79 594-684 9-88 (454)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-26 4.9E-31 290.9 28.0 359 1004-1418 30-512 (562)
31 1jl5_A Outer protein YOPM; leu 99.9 8.3E-27 2.8E-31 281.7 22.6 300 1038-1418 131-431 (454)
32 1o6v_A Internalin A; bacterial 99.9 5E-26 1.7E-30 278.4 28.0 323 1037-1417 67-389 (466)
33 3v47_A TOLL-like receptor 5B a 99.9 1.7E-26 5.8E-31 283.0 22.3 365 1041-1447 13-407 (455)
34 2id5_A Lingo-1, leucine rich r 99.9 7.6E-26 2.6E-30 278.5 27.2 229 1166-1417 104-334 (477)
35 1o6v_A Internalin A; bacterial 99.9 1.2E-25 4E-30 275.2 26.8 342 1038-1447 46-387 (466)
36 2id5_A Lingo-1, leucine rich r 99.9 2.2E-25 7.4E-30 274.5 25.4 302 1037-1370 31-334 (477)
37 4fmz_A Internalin; leucine ric 99.9 3.2E-25 1.1E-29 260.7 24.4 303 1038-1416 44-346 (347)
38 3bz5_A Internalin-J, INLJ; leu 99.9 6.3E-25 2.2E-29 265.5 25.9 338 1002-1418 39-389 (457)
39 3o6n_A APL1; leucine-rich repe 99.9 1.4E-24 4.8E-29 259.4 21.3 308 1038-1418 45-354 (390)
40 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-24 2.2E-28 256.6 25.9 304 1038-1417 42-353 (457)
41 3oja_B Anopheles plasmodium-re 99.9 2.2E-24 7.6E-29 272.0 21.0 308 1038-1418 51-360 (597)
42 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.9E-28 247.4 25.3 305 1002-1392 41-345 (347)
43 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-24 9.4E-29 247.1 15.4 227 1166-1416 76-304 (313)
44 3o6n_A APL1; leucine-rich repe 99.9 1.6E-22 5.6E-27 241.4 27.2 283 1004-1320 44-328 (390)
45 1xku_A Decorin; proteoglycan, 99.9 1.9E-22 6.4E-27 234.8 26.2 293 1039-1390 32-329 (330)
46 1ogq_A PGIP-2, polygalacturona 99.9 4.8E-24 1.6E-28 245.1 12.3 250 1038-1323 50-304 (313)
47 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-22 4.9E-27 235.8 23.7 292 1039-1391 34-331 (332)
48 3oja_B Anopheles plasmodium-re 99.9 2.9E-22 9.9E-27 252.7 26.8 284 1037-1370 74-359 (597)
49 1z7x_W Ribonuclease inhibitor; 99.9 5.9E-26 2E-30 278.8 -9.2 356 1004-1394 2-412 (461)
50 1xku_A Decorin; proteoglycan, 99.9 7.6E-22 2.6E-26 229.6 24.5 269 1037-1320 51-329 (330)
51 2ft3_A Biglycan; proteoglycan, 99.9 6.5E-22 2.2E-26 230.3 23.5 286 1063-1414 34-331 (332)
52 1z7x_W Ribonuclease inhibitor; 99.9 3.8E-24 1.3E-28 262.7 1.6 279 1038-1320 3-323 (461)
53 4fcg_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 221.9 21.3 232 1037-1320 80-311 (328)
54 4fcg_A Uncharacterized protein 99.9 1.2E-21 4E-26 226.5 15.6 223 1166-1415 81-313 (328)
55 3ogk_B Coronatine-insensitive 99.8 2E-22 6.9E-27 256.0 5.7 205 1166-1391 293-524 (592)
56 3ogk_B Coronatine-insensitive 99.8 4.9E-22 1.7E-26 252.4 7.7 383 1002-1420 109-530 (592)
57 3zyi_A Leucine-rich repeat-con 99.8 1.1E-20 3.9E-25 229.8 18.7 230 1165-1418 74-305 (452)
58 2z80_A TOLL-like receptor 2, v 99.8 7.5E-21 2.6E-25 223.4 16.3 232 1167-1418 77-316 (353)
59 3zyj_A Leucine-rich repeat-con 99.8 6.3E-21 2.2E-25 231.2 16.1 230 1165-1418 63-294 (440)
60 2z66_A Variable lymphocyte rec 99.8 3.5E-21 1.2E-25 221.5 12.3 229 1166-1417 28-262 (306)
61 2z66_A Variable lymphocyte rec 99.8 2.3E-20 7.9E-25 214.6 17.5 245 1041-1322 10-260 (306)
62 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-20 5.9E-25 213.1 14.3 230 1165-1416 31-261 (285)
63 1ozn_A Reticulon 4 receptor; N 99.8 5.3E-20 1.8E-24 209.1 17.9 202 1166-1390 80-284 (285)
64 2z80_A TOLL-like receptor 2, v 99.8 3.5E-20 1.2E-24 217.8 16.0 250 1037-1321 51-312 (353)
65 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.6E-24 219.0 23.0 156 1167-1324 148-304 (452)
66 3zyj_A Leucine-rich repeat-con 99.8 2.9E-19 9.9E-24 216.6 22.9 245 1042-1325 47-294 (440)
67 3oja_A Leucine-rich immune mol 99.8 4.5E-20 1.5E-24 225.2 12.8 238 1035-1318 31-270 (487)
68 2p1m_B Transport inhibitor res 99.8 3.6E-22 1.2E-26 254.0 -6.1 411 1001-1422 62-525 (594)
69 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-18 4.6E-23 215.8 25.1 261 1038-1396 40-300 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.8 9.4E-21 3.2E-25 218.4 5.1 239 1036-1320 32-272 (317)
71 3o53_A Protein LRIM1, AGAP0063 99.8 3.3E-20 1.1E-24 213.8 7.6 215 1166-1416 34-250 (317)
72 2z62_A TOLL-like receptor 4, v 99.8 8.2E-19 2.8E-23 198.2 18.2 209 1164-1395 26-239 (276)
73 1wwl_A Monocyte differentiatio 99.8 4.7E-20 1.6E-24 212.0 7.9 204 1188-1417 93-310 (312)
74 2p1m_B Transport inhibitor res 99.8 8.1E-21 2.8E-25 241.4 1.7 350 1003-1392 128-518 (594)
75 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5.1E-24 220.6 12.8 216 1166-1417 34-251 (487)
76 3g06_A SSPH2 (leucine-rich rep 99.8 5.3E-18 1.8E-22 210.4 25.4 259 1062-1418 40-299 (622)
77 1wwl_A Monocyte differentiatio 99.8 4.3E-20 1.5E-24 212.3 4.1 247 1166-1448 43-309 (312)
78 2o6q_A Variable lymphocyte rec 99.7 2.4E-17 8.1E-22 185.1 19.7 203 1167-1394 17-219 (270)
79 2o6q_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 184.6 19.2 203 1190-1418 16-220 (270)
80 1p9a_G Platelet glycoprotein I 99.7 1.2E-17 4E-22 188.9 15.8 198 1166-1392 10-207 (290)
81 2z62_A TOLL-like receptor 4, v 99.7 9E-18 3.1E-22 189.6 14.6 206 1190-1418 28-239 (276)
82 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.5E-22 191.5 15.2 227 1167-1417 65-308 (310)
83 3rfs_A Internalin B, repeat mo 99.7 3.4E-17 1.2E-21 183.9 16.7 185 1166-1381 63-247 (272)
84 2xwt_C Thyrotropin receptor; s 99.7 2.7E-17 9.2E-22 181.1 15.2 197 1191-1414 32-237 (239)
85 1p9a_G Platelet glycoprotein I 99.7 9.8E-17 3.4E-21 181.3 18.7 180 1165-1370 30-209 (290)
86 3rfs_A Internalin B, repeat mo 99.7 5E-17 1.7E-21 182.6 16.2 198 1189-1418 40-237 (272)
87 4glp_A Monocyte differentiatio 99.7 2.1E-17 7.2E-22 189.8 11.8 200 1166-1393 91-307 (310)
88 2xwt_C Thyrotropin receptor; s 99.7 9.3E-17 3.2E-21 176.7 15.8 201 1164-1391 29-237 (239)
89 2ast_B S-phase kinase-associat 99.7 3.9E-18 1.3E-22 199.2 3.5 223 1039-1272 48-282 (336)
90 2ast_B S-phase kinase-associat 99.7 8.7E-18 3E-22 196.2 6.3 155 1166-1320 118-282 (336)
91 3m19_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 172.6 16.2 160 1164-1323 33-192 (251)
92 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 203.1 -1.9 212 1166-1395 60-318 (386)
93 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 169.1 16.4 179 1192-1395 16-194 (251)
94 1h6u_A Internalin H; cell adhe 99.6 6.3E-16 2.1E-20 176.8 13.0 191 1166-1394 41-231 (308)
95 4ay9_X Follicle-stimulating ho 99.6 2.4E-15 8.1E-20 175.8 17.4 224 1165-1413 29-256 (350)
96 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.3E-20 174.2 14.3 192 1132-1369 39-230 (308)
97 2ca6_A RAN GTPase-activating p 99.6 1.5E-17 5.1E-22 198.0 -2.6 155 1166-1320 94-284 (386)
98 3goz_A Leucine-rich repeat-con 99.6 2.8E-17 9.5E-22 193.3 -0.2 238 1164-1418 20-299 (362)
99 3goz_A Leucine-rich repeat-con 99.6 7E-17 2.4E-21 189.9 2.8 255 1043-1300 3-298 (362)
100 1w5s_A Origin recognition comp 99.6 6.7E-15 2.3E-19 177.1 17.5 313 188-512 22-387 (412)
101 2qen_A Walker-type ATPase; unk 99.6 1.7E-14 5.9E-19 169.4 19.8 291 186-517 10-349 (350)
102 2o6s_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 158.0 14.5 164 1189-1381 27-190 (208)
103 3qfl_A MLA10; coiled-coil, (CC 99.6 3.3E-15 1.1E-19 138.8 8.6 79 12-90 2-82 (115)
104 4ay9_X Follicle-stimulating ho 99.6 4.1E-14 1.4E-18 165.2 19.0 238 1088-1389 12-255 (350)
105 3cvr_A Invasion plasmid antige 99.6 1.5E-14 5.2E-19 177.0 14.7 188 1167-1397 60-247 (571)
106 2fna_A Conserved hypothetical 99.5 1.4E-13 4.7E-18 162.2 18.9 289 186-516 11-356 (357)
107 3cvr_A Invasion plasmid antige 99.5 6.6E-14 2.2E-18 171.3 15.7 179 1190-1418 59-245 (571)
108 2v9t_B SLIT homolog 2 protein 99.5 5.6E-14 1.9E-18 151.5 13.4 152 1169-1323 14-165 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.5 6E-14 2.1E-18 151.3 13.5 152 1169-1323 14-166 (220)
110 4ezg_A Putative uncharacterize 99.5 8.4E-14 2.9E-18 147.6 12.3 149 1166-1321 44-192 (197)
111 2xot_A Amphoterin-induced prot 99.5 4.7E-14 1.6E-18 165.3 10.7 162 1164-1325 37-204 (361)
112 2o6s_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 146.2 14.5 175 1193-1399 10-184 (208)
113 1h6t_A Internalin B; cell adhe 99.5 7.5E-14 2.6E-18 157.9 11.2 171 1188-1394 44-214 (291)
114 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4E-18 156.3 12.5 142 1167-1320 47-188 (291)
115 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 148.9 12.8 133 1190-1323 40-172 (229)
116 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.7E-18 145.3 11.5 106 1211-1320 41-146 (197)
117 2v9t_B SLIT homolog 2 protein 99.5 2.4E-13 8.2E-18 146.5 12.7 138 1164-1301 30-167 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 3.9E-13 1.3E-17 144.9 14.0 138 1165-1302 31-169 (220)
119 1m9s_A Internalin B; cell inva 99.4 7.6E-14 2.6E-18 173.1 7.9 190 1168-1395 23-212 (605)
120 2xot_A Amphoterin-induced prot 99.4 3E-13 1E-17 158.5 12.3 149 1169-1320 21-173 (361)
121 1m9s_A Internalin B; cell inva 99.4 2.8E-13 9.6E-18 168.0 12.5 169 1131-1321 40-208 (605)
122 3e6j_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 142.9 13.3 138 1164-1302 38-175 (229)
123 2qby_B CDC6 homolog 3, cell di 99.4 6.8E-12 2.3E-16 149.0 21.8 291 188-499 20-339 (384)
124 2v1u_A Cell division control p 99.4 9.7E-12 3.3E-16 148.1 20.9 292 188-498 19-350 (387)
125 4b8c_D Glucose-repressible alc 99.4 8.9E-14 3E-18 177.4 2.1 136 1181-1320 215-351 (727)
126 1fnn_A CDC6P, cell division co 99.3 4.3E-11 1.5E-15 142.5 22.9 294 188-499 17-351 (389)
127 2ell_A Acidic leucine-rich nuc 99.3 2E-12 7E-17 133.0 9.0 130 1189-1320 23-157 (168)
128 2ell_A Acidic leucine-rich nuc 99.3 1.6E-12 5.6E-17 133.7 7.7 136 1163-1300 21-161 (168)
129 1xeu_A Internalin C; cellular 99.3 1.5E-12 5.1E-17 144.6 7.7 141 1167-1320 20-160 (263)
130 1dce_A Protein (RAB geranylger 99.3 6.1E-15 2.1E-19 182.0 -12.9 122 1191-1317 442-567 (567)
131 1dce_A Protein (RAB geranylger 99.3 5.5E-14 1.9E-18 173.4 -5.5 199 1166-1409 349-566 (567)
132 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.8E-17 131.2 5.1 127 1190-1318 17-148 (149)
133 1w8a_A SLIT protein; signaling 99.3 9.2E-12 3.2E-16 130.9 11.0 106 1215-1320 30-136 (192)
134 2qby_A CDC6 homolog 1, cell di 99.3 3.5E-11 1.2E-15 143.2 16.9 291 188-498 20-347 (386)
135 3sb4_A Hypothetical leucine ri 99.3 1.7E-11 5.8E-16 141.6 13.5 266 1037-1316 48-327 (329)
136 1w8a_A SLIT protein; signaling 99.3 1.5E-11 5.3E-16 129.2 11.8 133 1168-1303 10-143 (192)
137 2je0_A Acidic leucine-rich nuc 99.3 2E-12 6.8E-17 130.0 4.4 129 1165-1295 16-149 (149)
138 1xeu_A Internalin C; cellular 99.2 1.7E-11 5.8E-16 136.0 11.9 142 1166-1320 41-182 (263)
139 4b8c_D Glucose-repressible alc 99.2 2E-12 7E-17 164.9 3.2 192 1166-1390 173-369 (727)
140 3sb4_A Hypothetical leucine ri 99.2 3.5E-11 1.2E-15 139.0 13.0 267 1038-1321 25-308 (329)
141 2wfh_A SLIT homolog 2 protein 99.2 3.5E-11 1.2E-15 126.3 11.5 126 1194-1323 14-139 (193)
142 2o6r_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 120.5 11.6 131 1168-1301 9-139 (177)
143 1njg_A DNA polymerase III subu 99.1 4.4E-10 1.5E-14 124.3 16.7 202 188-397 23-231 (250)
144 2o6r_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 119.6 12.4 128 1191-1321 8-135 (177)
145 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.2E-15 122.1 11.2 128 1169-1300 13-140 (193)
146 4fdw_A Leucine rich hypothetic 99.1 1.5E-09 5E-14 127.7 21.2 219 1167-1417 158-384 (401)
147 1a9n_A U2A', U2A'; complex (nu 99.1 3.6E-11 1.2E-15 124.6 5.4 129 1187-1320 16-150 (176)
148 4fdw_A Leucine rich hypothetic 99.1 6.4E-09 2.2E-13 122.3 24.0 148 1167-1320 227-380 (401)
149 1a9n_A U2A', U2A'; complex (nu 99.1 7.2E-11 2.5E-15 122.2 5.9 130 1166-1300 19-154 (176)
150 2chg_A Replication factor C sm 99.0 2.6E-09 8.9E-14 116.0 15.9 184 188-394 17-204 (226)
151 1ds9_A Outer arm dynein; leuci 99.0 3.5E-12 1.2E-16 135.1 -9.8 132 1182-1320 40-182 (198)
152 1ds9_A Outer arm dynein; leuci 98.9 6.4E-12 2.2E-16 133.1 -10.2 132 1257-1417 43-186 (198)
153 3g39_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 108.7 10.0 84 1238-1321 30-113 (170)
154 1hqc_A RUVB; extended AAA-ATPa 98.9 2.1E-09 7.3E-14 123.9 9.1 267 188-498 12-324 (324)
155 4fs7_A Uncharacterized protein 98.9 4.2E-08 1.4E-12 116.2 19.4 212 1167-1413 163-376 (394)
156 2r9u_A Variable lymphocyte rec 98.8 6.4E-09 2.2E-13 106.8 10.0 103 1193-1298 15-117 (174)
157 3g39_A Variable lymphocyte rec 98.8 7E-09 2.4E-13 106.2 10.2 107 1192-1301 11-117 (170)
158 1sxj_B Activator 1 37 kDa subu 98.8 1.3E-08 4.4E-13 117.4 13.1 185 188-395 21-211 (323)
159 4fs7_A Uncharacterized protein 98.8 1.5E-07 5.1E-12 111.5 22.1 166 1188-1385 228-393 (394)
160 2r9u_A Variable lymphocyte rec 98.8 1.1E-08 3.8E-13 105.0 10.4 102 1217-1321 15-116 (174)
161 3un9_A NLR family member X1; l 98.8 5.9E-10 2E-14 129.8 -1.1 156 1166-1321 72-250 (372)
162 3un9_A NLR family member X1; l 98.6 8.9E-09 3E-13 119.8 3.6 84 1167-1250 127-223 (372)
163 1iqp_A RFCS; clamp loader, ext 98.6 1.4E-07 4.9E-12 108.8 13.4 183 188-396 25-214 (327)
164 4gt6_A Cell surface protein; l 98.6 3E-06 1E-10 100.1 22.7 85 1055-1142 80-168 (394)
165 1jr3_A DNA polymerase III subu 98.5 7.7E-07 2.6E-11 104.7 14.4 195 188-394 16-221 (373)
166 2ifg_A High affinity nerve gro 98.5 3E-07 1E-11 106.9 10.5 104 1170-1275 12-116 (347)
167 2ifg_A High affinity nerve gro 98.5 2.3E-07 8E-12 107.9 9.5 86 1166-1252 31-117 (347)
168 3te6_A Regulatory protein SIR3 98.5 7.9E-07 2.7E-11 98.8 12.8 172 189-365 21-211 (318)
169 4gt6_A Cell surface protein; l 98.4 5E-06 1.7E-10 98.3 20.3 62 1056-1120 57-123 (394)
170 2chq_A Replication factor C sm 98.4 7.8E-07 2.7E-11 102.1 12.5 181 188-394 17-204 (319)
171 2ra8_A Uncharacterized protein 98.3 3.3E-07 1.1E-11 105.4 5.1 132 1186-1320 168-317 (362)
172 2ra8_A Uncharacterized protein 98.3 7.1E-07 2.4E-11 102.6 7.5 34 1166-1199 193-228 (362)
173 3pfi_A Holliday junction ATP-d 98.3 7.6E-06 2.6E-10 94.5 16.3 175 188-394 29-227 (338)
174 1jbk_A CLPB protein; beta barr 98.3 9.6E-07 3.3E-11 92.8 7.5 45 188-238 22-66 (195)
175 1sxj_D Activator 1 41 kDa subu 98.2 7.3E-06 2.5E-10 95.5 14.6 192 188-394 37-235 (353)
176 3bos_A Putative DNA replicatio 98.2 1.1E-06 3.7E-11 96.2 6.2 172 189-394 29-217 (242)
177 4h09_A Hypothetical leucine ri 98.1 0.00016 5.4E-09 84.9 23.8 82 1234-1317 236-317 (379)
178 1a5t_A Delta prime, HOLB; zinc 98.1 4E-05 1.4E-09 87.7 16.9 173 193-394 7-205 (334)
179 2z4s_A Chromosomal replication 98.1 1.1E-05 3.6E-10 95.9 12.0 160 215-392 130-304 (440)
180 3h4m_A Proteasome-activating n 98.1 5.2E-06 1.8E-10 93.2 8.9 184 188-392 17-229 (285)
181 4h09_A Hypothetical leucine ri 98.1 0.00039 1.3E-08 81.6 24.9 289 1057-1390 41-343 (379)
182 1sxj_E Activator 1 40 kDa subu 98.0 2.6E-05 8.8E-10 90.8 13.7 194 188-394 14-237 (354)
183 3pvs_A Replication-associated 98.0 2.7E-05 9.2E-10 92.1 13.2 173 188-393 26-214 (447)
184 3uk6_A RUVB-like 2; hexameric 98.0 2.4E-05 8.2E-10 91.6 12.4 195 188-393 44-302 (368)
185 3u61_B DNA polymerase accessor 98.0 2.9E-05 9.8E-10 88.9 12.0 172 188-390 26-212 (324)
186 2qz4_A Paraplegin; AAA+, SPG7, 97.9 9.1E-05 3.1E-09 81.8 14.6 185 188-393 6-221 (262)
187 1sxj_A Activator 1 95 kDa subu 97.9 3E-05 1E-09 94.4 10.7 196 188-394 39-253 (516)
188 1d2n_A N-ethylmaleimide-sensit 97.9 0.00018 6.1E-09 79.8 16.0 170 189-385 34-228 (272)
189 1sxj_C Activator 1 40 kDa subu 97.8 8.2E-05 2.8E-09 85.6 13.2 181 188-391 25-209 (340)
190 3syl_A Protein CBBX; photosynt 97.8 9.8E-05 3.4E-09 83.9 12.8 158 189-365 32-217 (309)
191 3eie_A Vacuolar protein sortin 97.8 0.00024 8.2E-09 80.8 15.9 184 188-394 18-228 (322)
192 3n70_A Transport activator; si 97.8 2.8E-05 9.5E-10 76.7 7.0 114 189-334 2-115 (145)
193 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00047 1.6E-08 78.1 17.9 185 188-394 12-223 (322)
194 1io0_A Tropomodulin; LRR prote 97.8 5.6E-06 1.9E-10 85.6 1.8 94 1181-1274 27-135 (185)
195 3e4g_A ATP synthase subunit S, 97.8 1.6E-05 5.4E-10 79.4 4.8 35 1167-1201 62-96 (176)
196 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.6E-10 83.5 3.6 109 1166-1274 36-163 (185)
197 2p65_A Hypothetical protein PF 97.8 2.1E-05 7E-10 81.9 5.9 45 188-238 22-66 (187)
198 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6.3E-10 79.0 5.0 86 1190-1275 61-152 (176)
199 2qp9_X Vacuolar protein sortin 97.7 0.00017 5.8E-09 83.0 13.6 184 188-394 51-261 (355)
200 1l8q_A Chromosomal replication 97.7 0.00016 5.5E-09 82.5 12.9 154 215-389 37-203 (324)
201 3ec2_A DNA replication protein 97.7 6.9E-05 2.3E-09 77.2 8.7 122 193-335 19-143 (180)
202 3d8b_A Fidgetin-like protein 1 97.6 0.00033 1.1E-08 80.8 14.0 187 188-395 84-296 (357)
203 3b9p_A CG5977-PA, isoform A; A 97.6 0.00074 2.5E-08 76.0 16.4 182 188-393 21-232 (297)
204 2zan_A Vacuolar protein sortin 97.6 0.00078 2.7E-08 80.0 16.8 187 188-394 134-345 (444)
205 3cf0_A Transitional endoplasmi 97.5 0.00033 1.1E-08 78.7 11.7 180 188-388 15-222 (301)
206 2w58_A DNAI, primosome compone 97.5 9.6E-05 3.3E-09 77.8 6.8 119 195-334 36-158 (202)
207 2gno_A DNA polymerase III, gam 97.5 0.0003 1E-08 78.4 10.7 149 192-365 1-152 (305)
208 3vfd_A Spastin; ATPase, microt 97.5 0.00068 2.3E-08 79.4 14.1 186 188-394 115-326 (389)
209 3pxg_A Negative regulator of g 97.4 0.00043 1.5E-08 82.8 11.9 145 188-365 180-338 (468)
210 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.7E-09 79.6 5.3 79 594-673 168-258 (267)
211 3rw6_A Nuclear RNA export fact 97.4 4.1E-05 1.4E-09 82.9 2.0 81 1187-1268 167-257 (267)
212 3co5_A Putative two-component 97.4 0.00011 3.6E-09 72.2 4.6 111 188-334 4-115 (143)
213 1qvr_A CLPB protein; coiled co 97.4 0.00039 1.3E-08 90.3 10.9 173 188-383 170-368 (854)
214 3hu3_A Transitional endoplasmi 97.3 0.00047 1.6E-08 82.3 10.3 185 188-393 204-414 (489)
215 1in4_A RUVB, holliday junction 97.3 0.001 3.4E-08 76.0 12.6 176 188-393 25-222 (334)
216 2bjv_A PSP operon transcriptio 97.2 0.00073 2.5E-08 74.5 9.9 46 189-238 7-52 (265)
217 4fcw_A Chaperone protein CLPB; 97.2 0.0012 4.2E-08 74.8 11.7 137 189-334 18-169 (311)
218 2c9o_A RUVB-like 1; hexameric 97.2 0.00089 3E-08 80.0 10.5 92 298-393 298-409 (456)
219 2kjq_A DNAA-related protein; s 97.2 0.00018 6.2E-09 70.8 3.7 24 215-238 36-59 (149)
220 1ofh_A ATP-dependent HSL prote 97.2 0.0022 7.6E-08 72.6 13.2 51 188-238 15-73 (310)
221 1ojl_A Transcriptional regulat 97.2 0.0011 3.9E-08 74.2 10.5 47 188-238 2-48 (304)
222 1lv7_A FTSH; alpha/beta domain 97.1 0.0013 4.3E-08 72.2 10.4 183 188-391 12-222 (257)
223 4b4t_J 26S protease regulatory 97.1 0.00087 3E-08 76.3 9.1 179 188-387 148-354 (405)
224 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0028 9.5E-08 81.5 14.9 155 188-364 186-361 (758)
225 2r62_A Cell division protease 97.0 7.6E-05 2.6E-09 82.7 -1.0 51 188-238 11-67 (268)
226 4b4t_H 26S protease regulatory 97.0 0.00066 2.2E-08 78.3 6.1 178 188-386 209-414 (467)
227 3pxi_A Negative regulator of g 97.0 0.0022 7.6E-08 82.2 11.8 148 188-365 180-338 (758)
228 4b4t_L 26S protease subunit RP 96.9 0.0012 4E-08 76.7 7.5 179 188-387 181-387 (437)
229 2ce7_A Cell division protein F 96.8 0.0021 7.3E-08 75.8 9.2 179 188-387 16-221 (476)
230 2cvh_A DNA repair and recombin 96.8 0.0029 1E-07 67.3 9.6 86 215-306 20-116 (220)
231 3pxi_A Negative regulator of g 96.8 0.003 1E-07 81.0 10.8 155 188-364 491-674 (758)
232 4b4t_K 26S protease regulatory 96.7 0.0023 8E-08 74.0 7.8 51 188-238 172-229 (428)
233 2r44_A Uncharacterized protein 96.7 0.0028 9.6E-08 72.4 8.6 150 189-366 28-199 (331)
234 3m6a_A ATP-dependent protease 96.7 0.004 1.4E-07 75.8 10.3 162 188-365 81-266 (543)
235 4b4t_I 26S protease regulatory 96.6 0.001 3.6E-08 75.8 4.2 178 188-386 182-387 (437)
236 4b4t_M 26S protease regulatory 96.6 0.00052 1.8E-08 79.5 1.5 176 188-386 181-386 (434)
237 3cf2_A TER ATPase, transitiona 96.5 0.0049 1.7E-07 77.1 9.8 179 188-387 204-407 (806)
238 2qgz_A Helicase loader, putati 96.5 0.0018 6.3E-08 72.5 5.4 43 193-238 133-175 (308)
239 3t15_A Ribulose bisphosphate c 96.5 0.0059 2E-07 68.0 9.0 25 214-238 35-59 (293)
240 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.002 6.9E-08 70.5 4.2 69 215-306 123-193 (331)
241 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.04 1.4E-06 65.6 13.8 41 190-238 24-64 (500)
242 1qvr_A CLPB protein; coiled co 96.0 0.012 4E-07 76.4 9.7 137 188-334 558-710 (854)
243 2dhr_A FTSH; AAA+ protein, hex 96.0 0.024 8.2E-07 67.3 11.4 175 188-387 31-236 (499)
244 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0086 2.9E-07 76.9 7.9 51 188-238 458-511 (758)
245 1g8p_A Magnesium-chelatase 38 95.7 0.027 9.2E-07 64.8 10.4 45 188-238 24-68 (350)
246 1ixz_A ATP-dependent metallopr 95.7 0.017 5.9E-07 62.9 7.9 51 188-238 16-72 (254)
247 1ypw_A Transitional endoplasmi 95.6 0.016 5.4E-07 74.1 8.0 157 188-365 204-385 (806)
248 1um8_A ATP-dependent CLP prote 95.6 0.021 7.3E-07 66.3 8.6 22 216-237 73-94 (376)
249 1pgv_A TMD-1, tropomodulin TMD 95.5 0.0089 3E-07 60.8 4.4 18 1186-1203 66-83 (197)
250 2b8t_A Thymidine kinase; deoxy 95.4 0.01 3.5E-07 62.2 4.4 113 215-335 12-126 (223)
251 3hr8_A Protein RECA; alpha and 95.4 0.022 7.6E-07 64.3 7.4 86 214-306 60-150 (356)
252 1iy2_A ATP-dependent metallopr 95.2 0.03 1E-06 61.8 7.9 51 188-238 40-96 (278)
253 1v5w_A DMC1, meiotic recombina 95.2 0.045 1.5E-06 62.3 9.4 51 214-264 121-175 (343)
254 1pgv_A TMD-1, tropomodulin TMD 95.2 0.0073 2.5E-07 61.5 2.4 92 1181-1272 32-136 (197)
255 3io5_A Recombination and repai 95.2 0.047 1.6E-06 59.5 8.8 83 217-306 30-122 (333)
256 1jr3_D DNA polymerase III, del 95.2 0.096 3.3E-06 59.8 12.2 156 215-393 18-184 (343)
257 1xp8_A RECA protein, recombina 95.1 0.047 1.6E-06 62.2 8.9 86 214-306 73-163 (366)
258 1rz3_A Hypothetical protein rb 95.0 0.024 8.4E-07 59.0 5.9 43 192-237 2-44 (201)
259 2x8a_A Nuclear valosin-contain 94.9 0.064 2.2E-06 58.7 9.4 21 218-238 47-67 (274)
260 2zr9_A Protein RECA, recombina 94.9 0.055 1.9E-06 61.4 9.0 86 214-306 60-150 (349)
261 1n0w_A DNA repair protein RAD5 94.7 0.039 1.3E-06 59.5 7.1 49 214-262 23-75 (243)
262 1g5t_A COB(I)alamin adenosyltr 94.7 0.014 4.6E-07 59.1 3.0 117 217-335 30-163 (196)
263 1odf_A YGR205W, hypothetical 3 94.7 0.12 4.1E-06 56.8 10.8 82 213-294 29-117 (290)
264 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.059 2E-06 57.7 7.8 116 215-335 23-168 (235)
265 3cf2_A TER ATPase, transitiona 94.4 0.042 1.4E-06 68.8 6.8 99 187-306 476-581 (806)
266 3rfe_A Platelet glycoprotein I 94.4 0.052 1.8E-06 51.5 6.0 58 1266-1325 12-70 (130)
267 1u94_A RECA protein, recombina 94.3 0.075 2.6E-06 60.3 8.1 85 214-305 62-151 (356)
268 2z43_A DNA repair and recombin 94.2 0.063 2.2E-06 60.6 7.4 56 214-270 106-165 (324)
269 2px0_A Flagellar biosynthesis 94.2 0.09 3.1E-06 58.1 8.3 87 214-304 104-191 (296)
270 3rfe_A Platelet glycoprotein I 94.1 0.063 2.2E-06 50.9 6.0 53 599-653 11-66 (130)
271 2i1q_A DNA repair and recombin 94.0 0.068 2.3E-06 60.4 7.0 56 214-270 97-166 (322)
272 3ice_A Transcription terminati 93.9 0.044 1.5E-06 61.2 4.9 53 199-257 163-216 (422)
273 3c8u_A Fructokinase; YP_612366 93.5 0.054 1.9E-06 56.7 4.8 38 196-237 7-44 (208)
274 3bh0_A DNAB-like replicative h 93.4 0.22 7.4E-06 55.8 9.8 51 215-269 68-118 (315)
275 4a74_A DNA repair and recombin 93.3 0.14 4.9E-06 54.4 7.9 45 214-258 24-72 (231)
276 1gvn_B Zeta; postsegregational 93.3 0.073 2.5E-06 58.7 5.6 41 196-237 15-55 (287)
277 1qhx_A CPT, protein (chloramph 93.3 0.035 1.2E-06 56.4 2.8 22 216-237 4-25 (178)
278 1zp6_A Hypothetical protein AT 93.3 0.048 1.6E-06 56.2 3.8 24 215-238 9-32 (191)
279 1vma_A Cell division protein F 93.1 0.44 1.5E-05 52.6 11.5 109 195-306 82-197 (306)
280 1pzn_A RAD51, DNA repair and r 93.1 0.12 4E-06 58.8 7.0 47 214-260 130-180 (349)
281 3vaa_A Shikimate kinase, SK; s 93.0 0.046 1.6E-06 56.7 3.2 23 215-237 25-47 (199)
282 1sky_E F1-ATPase, F1-ATP synth 93.0 0.16 5.4E-06 59.0 7.8 87 216-304 152-254 (473)
283 3lw7_A Adenylate kinase relate 92.9 0.049 1.7E-06 55.3 3.2 20 216-235 2-21 (179)
284 3kb2_A SPBC2 prophage-derived 92.8 0.046 1.6E-06 55.2 2.9 22 216-237 2-23 (173)
285 1ly1_A Polynucleotide kinase; 92.8 0.057 1.9E-06 55.0 3.5 22 216-237 3-24 (181)
286 2ga8_A Hypothetical 39.9 kDa p 92.8 0.11 3.7E-06 58.0 5.8 45 191-237 2-46 (359)
287 3uie_A Adenylyl-sulfate kinase 92.7 0.062 2.1E-06 55.8 3.7 24 215-238 25-48 (200)
288 3tqc_A Pantothenate kinase; bi 92.6 0.1 3.6E-06 57.9 5.6 46 190-237 69-114 (321)
289 2p5t_B PEZT; postsegregational 92.6 0.086 2.9E-06 57.1 4.8 41 196-237 14-54 (253)
290 3lda_A DNA repair protein RAD5 92.5 0.23 7.8E-06 57.2 8.4 56 214-270 177-236 (400)
291 1kgd_A CASK, peripheral plasma 92.5 0.063 2.2E-06 54.6 3.3 23 215-237 5-27 (180)
292 3trf_A Shikimate kinase, SK; a 92.3 0.061 2.1E-06 55.1 3.0 22 216-237 6-27 (185)
293 1knq_A Gluconate kinase; ALFA/ 92.3 0.086 2.9E-06 53.3 4.0 24 214-237 7-30 (175)
294 3dm5_A SRP54, signal recogniti 92.3 0.83 2.8E-05 52.9 12.6 24 214-237 99-122 (443)
295 1kag_A SKI, shikimate kinase I 92.3 0.056 1.9E-06 54.6 2.6 22 216-237 5-26 (173)
296 3hws_A ATP-dependent CLP prote 92.3 0.091 3.1E-06 60.5 4.7 50 189-238 16-74 (363)
297 2xxa_A Signal recognition part 92.1 0.55 1.9E-05 54.7 11.1 43 196-238 78-123 (433)
298 2rhm_A Putative kinase; P-loop 92.1 0.079 2.7E-06 54.6 3.6 23 215-237 5-27 (193)
299 4eun_A Thermoresistant glucoki 92.1 0.071 2.4E-06 55.3 3.2 23 215-237 29-51 (200)
300 4gp7_A Metallophosphoesterase; 91.9 0.084 2.9E-06 53.1 3.4 23 215-237 9-31 (171)
301 3e70_C DPA, signal recognition 91.9 0.74 2.5E-05 51.4 11.4 26 213-238 127-152 (328)
302 3t61_A Gluconokinase; PSI-biol 91.9 0.068 2.3E-06 55.6 2.8 23 215-237 18-40 (202)
303 3tau_A Guanylate kinase, GMP k 91.9 0.081 2.8E-06 55.3 3.3 24 215-238 8-31 (208)
304 1nks_A Adenylate kinase; therm 91.7 0.084 2.9E-06 54.4 3.3 22 216-237 2-23 (194)
305 3jvv_A Twitching mobility prot 91.7 0.068 2.3E-06 60.6 2.7 111 216-338 124-234 (356)
306 2qt1_A Nicotinamide riboside k 91.7 0.11 3.8E-06 54.2 4.2 24 214-237 20-43 (207)
307 1y63_A LMAJ004144AAA protein; 91.7 0.095 3.3E-06 53.5 3.6 23 215-237 10-32 (184)
308 3iij_A Coilin-interacting nucl 91.7 0.072 2.5E-06 54.2 2.6 23 215-237 11-33 (180)
309 3kl4_A SRP54, signal recogniti 91.6 0.89 3E-05 52.6 11.9 25 214-238 96-120 (433)
310 1uf9_A TT1252 protein; P-loop, 91.6 0.096 3.3E-06 54.5 3.6 25 213-237 6-30 (203)
311 2ze6_A Isopentenyl transferase 91.6 0.088 3E-06 56.9 3.4 22 216-237 2-23 (253)
312 3tr0_A Guanylate kinase, GMP k 91.6 0.094 3.2E-06 54.7 3.5 22 216-237 8-29 (205)
313 2bdt_A BH3686; alpha-beta prot 91.6 0.098 3.4E-06 53.7 3.6 22 216-237 3-24 (189)
314 1ukz_A Uridylate kinase; trans 91.6 0.11 3.8E-06 54.0 4.0 24 214-237 14-37 (203)
315 1uj2_A Uridine-cytidine kinase 91.6 0.096 3.3E-06 56.7 3.6 25 213-237 20-44 (252)
316 1zuh_A Shikimate kinase; alpha 91.5 0.085 2.9E-06 52.9 3.0 24 214-237 6-29 (168)
317 3llm_A ATP-dependent RNA helic 91.4 0.57 2E-05 49.8 9.6 102 197-307 66-188 (235)
318 3umf_A Adenylate kinase; rossm 91.4 0.11 3.7E-06 54.1 3.7 25 213-237 27-51 (217)
319 2qor_A Guanylate kinase; phosp 91.4 0.079 2.7E-06 55.2 2.6 24 214-237 11-34 (204)
320 2plr_A DTMP kinase, probable t 91.4 0.21 7E-06 52.4 5.9 23 216-238 5-27 (213)
321 1tev_A UMP-CMP kinase; ploop, 91.4 0.1 3.5E-06 53.9 3.5 23 215-237 3-25 (196)
322 3asz_A Uridine kinase; cytidin 91.4 0.11 3.7E-06 54.5 3.7 24 214-237 5-28 (211)
323 2ffh_A Protein (FFH); SRP54, s 91.3 0.4 1.4E-05 55.5 8.6 24 215-238 98-121 (425)
324 2yvu_A Probable adenylyl-sulfa 91.3 0.13 4.4E-06 52.6 4.1 25 214-238 12-36 (186)
325 1kht_A Adenylate kinase; phosp 91.3 0.095 3.3E-06 53.9 3.2 22 216-237 4-25 (192)
326 3l0o_A Transcription terminati 91.3 0.074 2.5E-06 59.3 2.3 54 198-257 163-217 (427)
327 1ye8_A Protein THEP1, hypothet 91.2 0.11 3.7E-06 52.6 3.3 22 217-238 2-23 (178)
328 1xjc_A MOBB protein homolog; s 91.2 0.14 4.9E-06 50.7 4.1 25 214-238 3-27 (169)
329 2j41_A Guanylate kinase; GMP, 91.2 0.1 3.5E-06 54.5 3.4 24 215-238 6-29 (207)
330 3a4m_A L-seryl-tRNA(SEC) kinas 91.2 0.11 3.8E-06 56.4 3.6 23 215-237 4-26 (260)
331 2c95_A Adenylate kinase 1; tra 91.1 0.1 3.5E-06 53.9 3.1 23 215-237 9-31 (196)
332 1via_A Shikimate kinase; struc 91.1 0.088 3E-06 53.3 2.6 21 217-237 6-26 (175)
333 2ck3_D ATP synthase subunit be 91.1 0.89 3E-05 52.6 11.1 65 199-269 142-207 (482)
334 1jjv_A Dephospho-COA kinase; P 91.1 0.12 4.1E-06 53.9 3.6 22 216-237 3-24 (206)
335 3a00_A Guanylate kinase, GMP k 91.0 0.089 3.1E-06 53.8 2.6 22 216-237 2-23 (186)
336 2jaq_A Deoxyguanosine kinase; 91.0 0.1 3.6E-06 54.3 3.2 21 217-237 2-22 (205)
337 3cm0_A Adenylate kinase; ATP-b 91.0 0.12 4.1E-06 52.9 3.5 23 215-237 4-26 (186)
338 2cdn_A Adenylate kinase; phosp 91.0 0.12 4.2E-06 53.6 3.6 24 214-237 19-42 (201)
339 3ney_A 55 kDa erythrocyte memb 90.9 0.11 3.8E-06 53.0 3.1 24 214-237 18-41 (197)
340 2if2_A Dephospho-COA kinase; a 90.9 0.1 3.6E-06 54.3 3.0 21 217-237 3-23 (204)
341 2iyv_A Shikimate kinase, SK; t 90.8 0.085 2.9E-06 53.9 2.2 21 217-237 4-24 (184)
342 1fx0_B ATP synthase beta chain 90.8 0.44 1.5E-05 55.4 8.1 64 199-268 154-218 (498)
343 1cke_A CK, MSSA, protein (cyti 90.8 0.11 3.9E-06 55.1 3.2 22 216-237 6-27 (227)
344 1ex7_A Guanylate kinase; subst 90.8 0.092 3.2E-06 53.2 2.3 22 216-237 2-23 (186)
345 1qf9_A UMP/CMP kinase, protein 90.7 0.15 5E-06 52.5 3.9 23 215-237 6-28 (194)
346 3aez_A Pantothenate kinase; tr 90.7 0.14 4.9E-06 56.9 3.9 25 213-237 88-112 (312)
347 1rj9_A FTSY, signal recognitio 90.7 0.14 4.7E-06 56.8 3.7 24 214-237 101-124 (304)
348 2bbw_A Adenylate kinase 4, AK4 90.6 0.12 4.2E-06 55.6 3.3 23 215-237 27-49 (246)
349 1lvg_A Guanylate kinase, GMP k 90.6 0.1 3.6E-06 53.9 2.5 22 216-237 5-26 (198)
350 1htw_A HI0065; nucleotide-bind 90.5 0.16 5.6E-06 49.9 3.8 23 215-237 33-55 (158)
351 1e6c_A Shikimate kinase; phosp 90.5 0.1 3.5E-06 52.6 2.4 22 216-237 3-24 (173)
352 4a1f_A DNAB helicase, replicat 90.5 0.49 1.7E-05 52.8 8.1 52 215-270 46-97 (338)
353 2pez_A Bifunctional 3'-phospho 90.5 0.15 5.1E-06 51.7 3.6 23 215-237 5-27 (179)
354 3upu_A ATP-dependent DNA helic 90.4 0.23 8E-06 59.0 5.8 22 217-238 47-68 (459)
355 1nn5_A Similar to deoxythymidy 90.4 0.28 9.5E-06 51.5 5.8 23 215-237 9-31 (215)
356 2bwj_A Adenylate kinase 5; pho 90.4 0.12 4.1E-06 53.5 2.9 22 216-237 13-34 (199)
357 3tlx_A Adenylate kinase 2; str 90.4 0.22 7.4E-06 53.4 5.0 24 214-237 28-51 (243)
358 2grj_A Dephospho-COA kinase; T 90.4 0.15 5E-06 52.2 3.4 24 214-237 11-34 (192)
359 2pt5_A Shikimate kinase, SK; a 90.3 0.14 4.7E-06 51.3 3.2 21 217-237 2-22 (168)
360 2z0h_A DTMP kinase, thymidylat 90.3 0.3 1E-05 50.3 5.9 21 217-237 2-22 (197)
361 2jeo_A Uridine-cytidine kinase 90.3 0.16 5.6E-06 54.5 3.9 24 214-237 24-47 (245)
362 2j37_W Signal recognition part 90.3 1.4 4.6E-05 52.3 12.0 41 197-237 80-123 (504)
363 1znw_A Guanylate kinase, GMP k 90.3 0.14 4.9E-06 53.3 3.4 23 215-237 20-42 (207)
364 2vli_A Antibiotic resistance p 90.2 0.092 3.2E-06 53.5 1.8 23 215-237 5-27 (183)
365 3fwy_A Light-independent proto 90.1 0.16 5.6E-06 56.5 3.8 25 213-237 46-70 (314)
366 2r6a_A DNAB helicase, replicat 90.1 0.83 2.8E-05 54.1 10.2 50 215-267 203-252 (454)
367 2yhs_A FTSY, cell division pro 90.1 0.82 2.8E-05 53.4 9.7 43 213-258 291-333 (503)
368 3zvl_A Bifunctional polynucleo 90.1 0.54 1.8E-05 54.9 8.3 26 213-238 256-281 (416)
369 1ls1_A Signal recognition part 90.0 0.6 2.1E-05 51.5 8.3 24 215-238 98-121 (295)
370 1z6g_A Guanylate kinase; struc 90.0 0.13 4.5E-06 54.0 2.8 23 215-237 23-45 (218)
371 1aky_A Adenylate kinase; ATP:A 89.9 0.15 5.2E-06 53.8 3.2 22 216-237 5-26 (220)
372 2f6r_A COA synthase, bifunctio 89.9 0.18 6.2E-06 55.3 3.9 24 214-237 74-97 (281)
373 4e22_A Cytidylate kinase; P-lo 89.9 0.16 5.5E-06 54.8 3.4 23 215-237 27-49 (252)
374 2pbr_A DTMP kinase, thymidylat 89.8 0.16 5.3E-06 52.4 3.2 21 217-237 2-22 (195)
375 2wwf_A Thymidilate kinase, put 89.7 0.15 5.2E-06 53.4 3.1 23 215-237 10-32 (212)
376 1tue_A Replication protein E1; 89.7 0.22 7.4E-06 50.6 3.9 37 197-238 45-81 (212)
377 1g41_A Heat shock protein HSLU 89.7 0.28 9.5E-06 56.9 5.3 50 188-237 15-72 (444)
378 2hf9_A Probable hydrogenase ni 89.6 0.21 7.1E-06 52.9 4.1 25 214-238 37-61 (226)
379 1s96_A Guanylate kinase, GMP k 89.6 0.18 6.1E-06 52.9 3.3 25 214-238 15-39 (219)
380 1zd8_A GTP:AMP phosphotransfer 89.6 0.15 5.2E-06 54.1 2.9 23 215-237 7-29 (227)
381 1j8m_F SRP54, signal recogniti 89.5 0.66 2.3E-05 51.1 8.1 90 215-306 98-191 (297)
382 3a8t_A Adenylate isopentenyltr 89.4 0.21 7.1E-06 55.4 3.9 24 214-237 39-62 (339)
383 1m7g_A Adenylylsulfate kinase; 89.4 0.2 7E-06 52.3 3.7 23 215-237 25-47 (211)
384 2v54_A DTMP kinase, thymidylat 89.2 0.18 6.3E-06 52.3 3.2 23 216-238 5-27 (204)
385 3e1s_A Exodeoxyribonuclease V, 89.1 0.73 2.5E-05 56.1 8.8 104 216-333 205-314 (574)
386 2ewv_A Twitching motility prot 89.1 0.22 7.6E-06 57.0 4.0 110 215-337 136-246 (372)
387 1zak_A Adenylate kinase; ATP:A 89.1 0.16 5.5E-06 53.7 2.6 23 215-237 5-27 (222)
388 3fb4_A Adenylate kinase; psych 89.1 0.19 6.5E-06 52.8 3.2 21 217-237 2-22 (216)
389 1vht_A Dephospho-COA kinase; s 89.0 0.23 7.8E-06 52.3 3.8 23 215-237 4-26 (218)
390 3nwj_A ATSK2; P loop, shikimat 88.9 0.17 5.7E-06 54.2 2.6 22 216-237 49-70 (250)
391 1zu4_A FTSY; GTPase, signal re 88.9 0.61 2.1E-05 51.9 7.2 25 213-237 103-127 (320)
392 3dl0_A Adenylate kinase; phosp 88.8 0.2 6.9E-06 52.6 3.2 21 217-237 2-22 (216)
393 3d3q_A TRNA delta(2)-isopenten 88.8 0.21 7.3E-06 55.5 3.4 22 216-237 8-29 (340)
394 2qe7_A ATP synthase subunit al 88.7 0.35 1.2E-05 56.2 5.3 95 199-304 151-263 (502)
395 2wsm_A Hydrogenase expression/ 88.7 0.29 9.9E-06 51.6 4.4 41 192-238 13-53 (221)
396 3cmu_A Protein RECA, recombina 88.7 0.61 2.1E-05 63.9 8.3 85 214-305 1426-1515(2050)
397 1sq5_A Pantothenate kinase; P- 88.6 0.26 8.9E-06 54.9 4.1 24 214-237 79-102 (308)
398 3b9q_A Chloroplast SRP recepto 88.6 0.25 8.6E-06 54.6 3.8 24 214-237 99-122 (302)
399 3exa_A TRNA delta(2)-isopenten 88.6 0.25 8.4E-06 54.0 3.6 23 215-237 3-25 (322)
400 2i3b_A HCR-ntpase, human cance 88.5 0.2 6.8E-06 51.0 2.7 22 217-238 3-24 (189)
401 1q57_A DNA primase/helicase; d 88.5 1 3.5E-05 54.2 9.5 54 214-270 241-294 (503)
402 2f1r_A Molybdopterin-guanine d 88.5 0.14 4.8E-06 51.1 1.6 22 216-237 3-24 (171)
403 3be4_A Adenylate kinase; malar 88.5 0.18 6.1E-06 53.0 2.5 22 216-237 6-27 (217)
404 1gtv_A TMK, thymidylate kinase 88.4 0.12 4.2E-06 54.2 1.1 22 217-238 2-23 (214)
405 3r20_A Cytidylate kinase; stru 88.4 0.23 7.9E-06 52.2 3.2 23 215-237 9-31 (233)
406 4eaq_A DTMP kinase, thymidylat 88.3 0.43 1.5E-05 50.4 5.3 25 214-238 25-49 (229)
407 2q6t_A DNAB replication FORK h 88.3 1.2 4.2E-05 52.4 9.8 53 215-270 200-252 (444)
408 3k1j_A LON protease, ATP-depen 88.3 0.28 9.4E-06 60.6 4.3 43 188-238 41-83 (604)
409 3hjn_A DTMP kinase, thymidylat 88.1 0.56 1.9E-05 48.1 5.9 22 217-238 2-23 (197)
410 1cr0_A DNA primase/helicase; R 88.1 0.57 1.9E-05 52.0 6.4 50 215-268 35-85 (296)
411 3tif_A Uncharacterized ABC tra 88.1 0.25 8.6E-06 52.4 3.3 23 215-237 31-53 (235)
412 2onk_A Molybdate/tungstate ABC 88.1 0.25 8.5E-06 52.6 3.2 22 216-237 25-46 (240)
413 3ake_A Cytidylate kinase; CMP 88.0 0.25 8.4E-06 51.5 3.2 21 217-237 4-24 (208)
414 1np6_A Molybdopterin-guanine d 88.0 0.25 8.6E-06 49.4 3.0 24 215-238 6-29 (174)
415 3crm_A TRNA delta(2)-isopenten 88.0 0.26 8.9E-06 54.5 3.4 22 216-237 6-27 (323)
416 3foz_A TRNA delta(2)-isopenten 88.0 0.31 1.1E-05 53.1 3.9 24 214-237 9-32 (316)
417 2ged_A SR-beta, signal recogni 87.9 0.38 1.3E-05 49.3 4.6 25 214-238 47-71 (193)
418 2ehv_A Hypothetical protein PH 87.9 0.25 8.6E-06 53.3 3.3 23 215-237 30-52 (251)
419 3lnc_A Guanylate kinase, GMP k 87.9 0.18 6.2E-06 53.6 2.1 23 215-237 27-50 (231)
420 3sr0_A Adenylate kinase; phosp 87.9 0.26 9E-06 50.9 3.2 21 217-237 2-22 (206)
421 2pcj_A ABC transporter, lipopr 87.6 0.26 8.8E-06 51.9 3.0 23 215-237 30-52 (224)
422 2cbz_A Multidrug resistance-as 87.6 0.28 9.6E-06 52.1 3.3 24 215-238 31-54 (237)
423 3vr4_D V-type sodium ATPase su 87.5 0.59 2E-05 53.7 6.0 86 216-304 152-257 (465)
424 2xb4_A Adenylate kinase; ATP-b 87.4 0.28 9.5E-06 51.8 3.2 21 217-237 2-22 (223)
425 3p32_A Probable GTPase RV1496/ 87.4 0.55 1.9E-05 53.5 5.9 37 197-237 65-101 (355)
426 1e4v_A Adenylate kinase; trans 87.3 0.28 9.5E-06 51.4 3.0 21 217-237 2-22 (214)
427 1ak2_A Adenylate kinase isoenz 87.3 0.3 1E-05 52.0 3.3 23 215-237 16-38 (233)
428 1b0u_A Histidine permease; ABC 87.3 0.3 1E-05 52.9 3.3 23 215-237 32-54 (262)
429 2og2_A Putative signal recogni 87.2 0.34 1.2E-05 54.7 3.8 24 214-237 156-179 (359)
430 3gfo_A Cobalt import ATP-bindi 87.1 0.29 1E-05 53.1 3.2 23 215-237 34-56 (275)
431 4edh_A DTMP kinase, thymidylat 87.1 0.87 3E-05 47.3 6.6 24 215-238 6-29 (213)
432 3b85_A Phosphate starvation-in 87.1 0.24 8.1E-06 51.4 2.3 22 216-237 23-44 (208)
433 1mv5_A LMRA, multidrug resista 87.1 0.35 1.2E-05 51.6 3.7 23 215-237 28-50 (243)
434 2olj_A Amino acid ABC transpor 87.0 0.32 1.1E-05 52.5 3.3 23 215-237 50-72 (263)
435 2qmh_A HPR kinase/phosphorylas 87.0 0.33 1.1E-05 49.0 3.1 22 216-237 35-56 (205)
436 1yrb_A ATP(GTP)binding protein 87.0 0.4 1.4E-05 52.1 4.2 25 213-237 12-36 (262)
437 2r9v_A ATP synthase subunit al 86.8 0.78 2.7E-05 53.3 6.5 94 199-304 164-276 (515)
438 4g1u_C Hemin import ATP-bindin 86.6 0.33 1.1E-05 52.6 3.2 23 215-237 37-59 (266)
439 1sgw_A Putative ABC transporte 86.6 0.29 9.8E-06 51.0 2.6 22 216-237 36-57 (214)
440 3vkw_A Replicase large subunit 86.5 0.85 2.9E-05 52.6 6.7 27 211-237 157-183 (446)
441 1ji0_A ABC transporter; ATP bi 86.5 0.34 1.2E-05 51.7 3.2 23 215-237 32-54 (240)
442 2v9p_A Replication protein E1; 86.5 0.34 1.2E-05 53.3 3.3 23 215-237 126-148 (305)
443 1a7j_A Phosphoribulokinase; tr 86.5 0.18 6.2E-06 55.5 1.1 23 215-237 5-27 (290)
444 1vpl_A ABC transporter, ATP-bi 86.5 0.35 1.2E-05 52.0 3.3 23 215-237 41-63 (256)
445 3ld9_A DTMP kinase, thymidylat 86.5 0.81 2.8E-05 47.7 6.0 25 214-238 20-44 (223)
446 2zu0_C Probable ATP-dependent 86.4 0.37 1.3E-05 52.3 3.5 23 215-237 46-68 (267)
447 2d2e_A SUFC protein; ABC-ATPas 86.3 0.37 1.3E-05 51.8 3.3 23 215-237 29-51 (250)
448 2ghi_A Transport protein; mult 86.3 0.36 1.2E-05 52.1 3.3 23 215-237 46-68 (260)
449 1g6h_A High-affinity branched- 86.3 0.35 1.2E-05 52.2 3.2 23 215-237 33-55 (257)
450 2pze_A Cystic fibrosis transme 86.2 0.35 1.2E-05 51.1 3.2 23 215-237 34-56 (229)
451 2ff7_A Alpha-hemolysin translo 86.2 0.36 1.2E-05 51.7 3.2 23 215-237 35-57 (247)
452 2dr3_A UPF0273 protein PH0284; 86.2 0.45 1.6E-05 51.1 4.1 39 215-255 23-61 (247)
453 1ltq_A Polynucleotide kinase; 86.2 0.36 1.2E-05 53.8 3.4 22 216-237 3-24 (301)
454 2vp4_A Deoxynucleoside kinase; 86.1 0.37 1.2E-05 51.1 3.2 25 213-237 18-42 (230)
455 2v3c_C SRP54, signal recogniti 86.1 0.43 1.5E-05 55.6 4.1 42 197-238 78-122 (432)
456 2ixe_A Antigen peptide transpo 86.1 0.37 1.3E-05 52.3 3.3 23 215-237 45-67 (271)
457 2eyu_A Twitching motility prot 86.1 0.44 1.5E-05 51.4 3.9 110 215-338 25-136 (261)
458 3cmu_A Protein RECA, recombina 86.0 1.1 3.7E-05 61.6 8.3 86 214-306 382-472 (2050)
459 2o8b_B DNA mismatch repair pro 86.0 0.92 3.2E-05 58.9 7.4 103 291-398 864-982 (1022)
460 2wji_A Ferrous iron transport 85.9 0.47 1.6E-05 47.2 3.8 23 216-238 4-26 (165)
461 3b5x_A Lipid A export ATP-bind 85.9 1.9 6.6E-05 52.8 10.0 23 215-237 369-391 (582)
462 1oix_A RAS-related protein RAB 85.9 0.37 1.3E-05 49.4 3.0 24 215-238 29-52 (191)
463 3oaa_A ATP synthase subunit al 85.8 0.8 2.7E-05 53.1 5.9 95 199-304 151-263 (513)
464 2zej_A Dardarin, leucine-rich 85.8 0.37 1.3E-05 49.0 3.0 22 217-238 4-25 (184)
465 2qi9_C Vitamin B12 import ATP- 85.7 0.39 1.3E-05 51.4 3.2 23 215-237 26-48 (249)
466 2yz2_A Putative ABC transporte 85.7 0.4 1.4E-05 52.0 3.3 23 215-237 33-55 (266)
467 3mfy_A V-type ATP synthase alp 85.6 1.4 4.8E-05 51.6 7.8 59 199-266 216-275 (588)
468 1q3t_A Cytidylate kinase; nucl 85.6 0.41 1.4E-05 51.0 3.3 25 213-237 14-38 (236)
469 1svm_A Large T antigen; AAA+ f 85.3 0.43 1.5E-05 54.3 3.5 24 214-237 168-191 (377)
470 3cmw_A Protein RECA, recombina 85.3 1 3.4E-05 61.1 7.4 87 214-307 382-473 (1706)
471 2ihy_A ABC transporter, ATP-bi 85.3 0.41 1.4E-05 52.2 3.2 23 215-237 47-69 (279)
472 2nq2_C Hypothetical ABC transp 85.3 0.41 1.4E-05 51.4 3.1 23 215-237 31-53 (253)
473 3end_A Light-independent proto 85.1 0.8 2.7E-05 51.0 5.6 41 213-255 39-79 (307)
474 3bgw_A DNAB-like replicative h 85.0 2.8 9.6E-05 49.1 10.3 51 215-269 197-247 (444)
475 3gqb_B V-type ATP synthase bet 85.0 0.76 2.6E-05 52.8 5.2 100 199-304 136-260 (464)
476 2dyk_A GTP-binding protein; GT 84.8 0.53 1.8E-05 46.3 3.5 23 216-238 2-24 (161)
477 1fx0_A ATP synthase alpha chai 84.8 0.71 2.4E-05 53.8 4.9 85 214-304 162-264 (507)
478 2ocp_A DGK, deoxyguanosine kin 84.7 0.49 1.7E-05 50.6 3.5 24 215-238 2-25 (241)
479 3lv8_A DTMP kinase, thymidylat 84.7 1 3.6E-05 47.4 5.9 37 215-252 27-63 (236)
480 3thx_A DNA mismatch repair pro 84.7 1.3 4.3E-05 56.8 7.6 22 214-235 661-682 (934)
481 2r8r_A Sensor protein; KDPD, P 84.7 0.92 3.1E-05 46.9 5.2 22 217-238 8-29 (228)
482 2f9l_A RAB11B, member RAS onco 84.6 0.48 1.6E-05 48.9 3.2 24 215-238 5-28 (199)
483 1nlf_A Regulatory protein REPA 84.5 0.47 1.6E-05 52.1 3.2 23 215-237 30-52 (279)
484 3v9p_A DTMP kinase, thymidylat 84.5 0.79 2.7E-05 48.0 4.8 24 215-238 25-48 (227)
485 3nh6_A ATP-binding cassette SU 84.2 0.42 1.4E-05 52.7 2.6 23 215-237 80-102 (306)
486 3eph_A TRNA isopentenyltransfe 84.1 0.5 1.7E-05 53.6 3.2 22 216-237 3-24 (409)
487 3vr4_A V-type sodium ATPase ca 84.1 1.9 6.5E-05 50.8 8.0 58 199-265 221-279 (600)
488 2wjg_A FEOB, ferrous iron tran 83.9 0.64 2.2E-05 47.3 3.8 24 215-238 7-30 (188)
489 2pjz_A Hypothetical protein ST 83.9 0.53 1.8E-05 50.8 3.2 22 216-237 31-52 (263)
490 4tmk_A Protein (thymidylate ki 83.9 1.2 4.2E-05 46.1 5.8 23 216-238 4-26 (213)
491 2ck3_A ATP synthase subunit al 83.8 1 3.5E-05 52.4 5.7 98 199-304 151-271 (510)
492 1ny5_A Transcriptional regulat 83.7 2.3 7.9E-05 48.9 8.7 44 190-237 139-182 (387)
493 2bbs_A Cystic fibrosis transme 83.6 0.54 1.9E-05 51.5 3.2 23 215-237 64-86 (290)
494 3sop_A Neuronal-specific septi 83.4 0.56 1.9E-05 50.9 3.2 21 217-237 4-24 (270)
495 1u0j_A DNA replication protein 83.4 1 3.5E-05 48.1 5.0 36 199-238 92-127 (267)
496 2ce2_X GTPase HRAS; signaling 83.1 0.57 1.9E-05 46.3 2.9 22 217-238 5-26 (166)
497 2c61_A A-type ATP synthase non 83.1 0.88 3E-05 52.7 4.7 65 199-268 141-208 (469)
498 3gmt_A Adenylate kinase; ssgci 83.1 0.57 2E-05 48.9 2.9 22 216-237 9-30 (230)
499 3cmw_A Protein RECA, recombina 83.0 1.2 4.1E-05 60.4 6.6 85 213-304 1429-1518(1706)
500 1p5z_B DCK, deoxycytidine kina 82.9 0.46 1.6E-05 51.6 2.3 24 214-237 23-46 (263)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.1e-52 Score=538.96 Aligned_cols=672 Identities=17% Similarity=0.108 Sum_probs=396.3
Q ss_pred ccccEEEecCCCCCc----CCcCccCCCccceeeccCCCcccccccccccCCccEEecCCCCchhHhhh--hhhhhcccC
Q 037733 596 QRLRVFSLCGYHISK----LPDSIGDLRYLRYLNLSGTGIRTLPESVNKLYNLHTLLLNDCHQLKKLCA--DMEDLIRLH 669 (1450)
Q Consensus 596 ~~Lr~L~L~~~~i~~----lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~L~~c~~l~~lp~--~i~~L~~L~ 669 (1450)
.+++.|+|+++.+.. +|.++++|++|++++++.+.+..+|..++++++|++|||++|.....+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 356777777776543 66677777777777777777777777777777777777777654445666 677777777
Q ss_pred cccccCCCCCccCCCCC-CCcccccccCceeccCCCCCCchhccccccCCCceeeccCcCCCChhhhhhhccccccCcce
Q 037733 670 HLKNSNTHSLEEMPLGI-GKLTCLQTLCNFVVGKDSGSGLRELKSLMHLKGTLNISNLENVKHIVDAEEAQLDRKENLEE 748 (1450)
Q Consensus 670 ~L~l~~~~~l~~lp~~i-~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 748 (1450)
+|++++|.....+|..+ +++++|++|. +.-+.+.. .....
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~------------------------Ls~n~l~~------~~~~~--------- 170 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLD------------------------LSANSISG------ANVVG--------- 170 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEE------------------------CCSSCCEE------ETHHH---------
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEE------------------------CCCCccCC------cCChh---------
Confidence 77777776333444443 5666666651 11000000 00000
Q ss_pred EEEEeccCCCCCCCchhhhHHhHhccCCCCCCcceEEEeccCCCCCCCCCCCCCCCceeEEEEecCCCCCCCCCCCCccc
Q 037733 749 LWLRWTRSTNGSASREAEAEEGVFDMLKPHKNLKHFCISGYGGTKFPTWLGDSSFSNLVALKFEDCGMCTTLPSVGQLPS 828 (1450)
Q Consensus 749 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 828 (1450)
...+..+++|++|+++++........ ..+++|+.|++++|.....+|.++.+++
T Consensus 171 -----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 224 (768)
T 3rgz_A 171 -----------------------WVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSA 224 (768)
T ss_dssp -----------------------HHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred -----------------------hhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCC
Confidence 00122333444444444433222111 3456677777776666655666667777
Q ss_pred ccceeccccccceEeCccccCCCCCCcCcccceeeccCcccccccccCccCCCCCCCCcccEEEeccCcCcccCCCCC--
Q 037733 829 LKHLALRRMSRVKRLGSQFYGNDSPVPFRCLETLRFENIPEWEDWIPHGSSQGVEGFPKLRELHILRCSKLKGTFPDH-- 906 (1450)
Q Consensus 829 L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~-- 906 (1450)
|++|+++++.....++..+ ..+++|++|.++++.- .... ....+++|++|++++| .+.+.+|..
T Consensus 225 L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~l-~~~~------~~~~l~~L~~L~L~~n-~l~~~ip~~~~ 290 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAI------STCTELKLLNISSNQF-VGPI------PPLPLKSLQYLSLAEN-KFTGEIPDFLS 290 (768)
T ss_dssp CCEEECCSSCCCSCHHHHT------TTCSSCCEEECCSSCC-EESC------CCCCCTTCCEEECCSS-EEEESCCCCSC
T ss_pred CCEEECcCCcCCCcccHHH------hcCCCCCEEECCCCcc-cCcc------CccccCCCCEEECcCC-ccCCccCHHHH
Confidence 7777776654222222111 1244555555544321 1111 0124667777777777 344455542
Q ss_pred --CCCccEEEEcccCCc---cccCCCCCCceEEEEcCCCCeeeeccccccCccccccccccccchhccCCCCCCCCcccc
Q 037733 907 --LPALEMLFIQGCEEL---SVSVTSLPALCKLEIGGCKKVVWRSATDHIGSQNSVVCKDASKQVFLAGPLKPRLPKLEE 981 (1450)
Q Consensus 907 --l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 981 (1450)
+++|+.|++++|... ...+..+++|+.|++++|.
T Consensus 291 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~----------------------------------------- 329 (768)
T 3rgz_A 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN----------------------------------------- 329 (768)
T ss_dssp TTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-----------------------------------------
T ss_pred hhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-----------------------------------------
Confidence 255555555554321 1223334444444444442
Q ss_pred ccccccccccchhcccccccccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCC-
Q 037733 982 LELNNIQEQSYIWKSHNGLLQDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLS- 1060 (1450)
Q Consensus 982 L~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~- 1060 (1450)
.....+...+..+++|+.|++++|.--..++.. +....++|++|++++|.+.+.+|..+..
T Consensus 330 ----------l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~--------l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 330 ----------FSGELPMDTLLKMRGLKVLDLSFNEFSGELPES--------LTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp ----------EEEECCHHHHTTCTTCCEEECCSSEEEECCCTT--------HHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred ----------ccCcCCHHHHhcCCCCCEEeCcCCccCccccHH--------HHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 111111122344555555555554211111111 1111236666777666666666655554
Q ss_pred -CCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCCcc
Q 037733 1061 -LSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPSLK 1137 (1450)
Q Consensus 1061 -l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~ 1137 (1450)
+++|++|++++|.+...++ .+..+++|++|++++|.+....|..+ ..+++|+.|++++|.+.+..+ .+..+++|+
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 5666777777666664444 45566666777776666555555554 256666666666666654433 334455666
Q ss_pred EEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCc
Q 037733 1138 RLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLR 1217 (1450)
Q Consensus 1138 ~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 1217 (1450)
.|++++|.-.. .++..+..+ ++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+
T Consensus 470 ~L~L~~N~l~~--~~p~~l~~l------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 470 TLILDFNDLTG--EIPSGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp EEECCSSCCCS--CCCGGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred EEEecCCcccC--cCCHHHhcC------CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 66666542111 223333333 4666666666666666666666666666666666666666666666666666
Q ss_pred EEEEccCCCccchhcccCCCCCCCceecccCC----------------------CcccccccccCCCccceEeeccCCCc
Q 037733 1218 EIRISLCSKLESIAERLDNNTSLEKIDTSDCE----------------------NLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1218 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~----------------------~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
+|++++|.+.+.+|..+..+..+..+++..+. +.+..+..+..++.+..+++..|.+.
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 66666666666666655555444444333311 11122233344555566667777777
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCC
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLP 1355 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1450)
+..|..+..+++|+.||+++|++.+.+|..++.+++|+.|+|++| .+.| .+|..+ ..+
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-------~l~g------~ip~~l---------~~L 679 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-------DISG------SIPDEV---------GDL 679 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-------CCCS------CCCGGG---------GGC
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-------ccCC------CCChHH---------hCC
Confidence 888888999999999999999999999999999999999999999 3333 455443 456
Q ss_pred cccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhHH----hhhcCCCCCCCcc
Q 037733 1356 ASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGE----KCRKDGGRYRDLL 1431 (1450)
Q Consensus 1356 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~c~~~~~~~~~~~ 1431 (1450)
++|++|+|++|++.+.+|..+..+++|++|+|++|++.+.+|..+.+.++....+.|||-.+. .|....+++|++|
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~ 759 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCC
Confidence 899999999999999999999999999999999999999999988888898899999975332 6999999999999
Q ss_pred cCccee
Q 037733 1432 THIPYV 1437 (1450)
Q Consensus 1432 ~~~~~~ 1437 (1450)
+|+|.+
T Consensus 760 ~~~~~~ 765 (768)
T 3rgz_A 760 QRSHHH 765 (768)
T ss_dssp ------
T ss_pred CCcccc
Confidence 999965
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-46 Score=490.08 Aligned_cols=632 Identities=17% Similarity=0.120 Sum_probs=418.8
Q ss_pred HHHHHhccccccEEEecCCCCCcCCcCccCCCccceeeccCCCcc-cccc--cccccCCccEEecCCCCchhHhhhhh-h
Q 037733 588 ILRKLLKLQRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIR-TLPE--SVNKLYNLHTLLLNDCHQLKKLCADM-E 663 (1450)
Q Consensus 588 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~LP~--~i~~L~~L~~L~L~~c~~l~~lp~~i-~ 663 (1450)
++..+..+++|++++++.+.+..+|+.|+++++||+|+|++|.+. .+|. .++++++|++|+|++|.....+|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 566777999999999999998888899999999999999999997 5787 89999999999999976555666665 8
Q ss_pred hhcccCcccccCCCCCccC-CCC---CCCcccccccCceeccCCCCCCchhccccccCCCceeeccCcCCCChhhhhhhc
Q 037733 664 DLIRLHHLKNSNTHSLEEM-PLG---IGKLTCLQTLCNFVVGKDSGSGLRELKSLMHLKGTLNISNLENVKHIVDAEEAQ 739 (1450)
Q Consensus 664 ~L~~L~~L~l~~~~~l~~l-p~~---i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 739 (1450)
++++|++|++++|. +... |.. ++++++|++|.. .-+.+... ..
T Consensus 149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~L------------------------s~n~l~~~--------~~ 195 (768)
T 3rgz_A 149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAI------------------------SGNKISGD--------VD 195 (768)
T ss_dssp CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEEC------------------------CSSEEESC--------CB
T ss_pred cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEEC------------------------CCCccccc--------CC
Confidence 99999999999998 5443 333 677777777711 10000000 00
Q ss_pred cccccCcceEEEEeccCCCCCCCchhhhHHhHhccCCCCCCcceEEEeccCCC-CCCCCCCCCCCCceeEEEEecCCCCC
Q 037733 740 LDRKENLEELWLRWTRSTNGSASREAEAEEGVFDMLKPHKNLKHFCISGYGGT-KFPTWLGDSSFSNLVALKFEDCGMCT 818 (1450)
Q Consensus 740 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~ 818 (1450)
...+.+|+.|+++++.... ....+..+++|++|+++++... .+|.++ ..+++|+.|++++|....
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNISSNQFVG 261 (768)
T ss_dssp CTTCTTCCEEECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEECCSSCCEE
T ss_pred cccCCcCCEEECcCCcCCC------------CCcccccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEECCCCcccC
Confidence 1334455555554443220 0111334444555555444433 123222 124444455554444433
Q ss_pred CCCCCCCcccccceeccccccceEeCccccCCCCCCcCcccceeeccCcccccccccCccCCCCCCCCcccEEEeccCcC
Q 037733 819 TLPSVGQLPSLKHLALRRMSRVKRLGSQFYGNDSPVPFRCLETLRFENIPEWEDWIPHGSSQGVEGFPKLRELHILRCSK 898 (1450)
Q Consensus 819 ~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 898 (1450)
.+|.. .+++|++|++.++.....++..+ ...+++|++|++++| .
T Consensus 262 ~~~~~-~l~~L~~L~L~~n~l~~~ip~~~----------------------------------~~~~~~L~~L~Ls~n-~ 305 (768)
T 3rgz_A 262 PIPPL-PLKSLQYLSLAENKFTGEIPDFL----------------------------------SGACDTLTGLDLSGN-H 305 (768)
T ss_dssp SCCCC-CCTTCCEEECCSSEEEESCCCCS----------------------------------CTTCTTCSEEECCSS-E
T ss_pred ccCcc-ccCCCCEEECcCCccCCccCHHH----------------------------------HhhcCcCCEEECcCC-c
Confidence 33332 44444444444432211111111 122466777777766 3
Q ss_pred cccCCCC---CCCCccEEEEcccCCc---cc-cCCCCCCceEEEEcCCCCeeeeccccccCccccccccccccchhccCC
Q 037733 899 LKGTFPD---HLPALEMLFIQGCEEL---SV-SVTSLPALCKLEIGGCKKVVWRSATDHIGSQNSVVCKDASKQVFLAGP 971 (1450)
Q Consensus 899 l~~~~p~---~l~~L~~L~l~~c~~l---~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1450)
+.+.+|. .+++|+.|++++|... .. .+..+++|+.|++++|... +.
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~---------------------------~~ 358 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---------------------------GE 358 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE---------------------------EC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC---------------------------cc
Confidence 4445553 4566777777666432 11 2566777888888777411 11
Q ss_pred CCCCCCccccccccccccccchhccccccccccc-CccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCC
Q 037733 972 LKPRLPKLEELELNNIQEQSYIWKSHNGLLQDIC-SLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEG 1050 (1450)
Q Consensus 972 ~~~~l~~L~~L~l~~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~ 1050 (1450)
+|..+ ..++ +|+.|+++++.--..++... ....+++|++|++++|.+
T Consensus 359 ~p~~l-------------------------~~l~~~L~~L~Ls~N~l~~~~~~~~-------~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 359 LPESL-------------------------TNLSASLLTLDLSSNNFSGPILPNL-------CQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp CCTTH-------------------------HHHTTTCSEEECCSSEEEEECCTTT-------TCSTTCCCCEEECCSSEE
T ss_pred ccHHH-------------------------HhhhcCCcEEEccCCCcCCCcChhh-------hhcccCCccEEECCCCcc
Confidence 11111 1122 44444444432111110000 000135788888888888
Q ss_pred ccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-
Q 037733 1051 LVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA- 1128 (1450)
Q Consensus 1051 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~- 1128 (1450)
.+.+|..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+...+|..+. .+++|+.|++++|.+.+..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCH
Confidence 88888888888999999999988876655 677788899999999988777777763 78889999999998886554
Q ss_pred CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCc
Q 037733 1129 GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPS 1208 (1450)
Q Consensus 1129 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 1208 (1450)
.+..+++|+.|++++|.-. ..++..+..+ ++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 485 ~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLT--GEIPKWIGRL------ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGGCTTCCEEECCSSCCC--SCCCGGGGGC------TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HHhcCCCCCEEEccCCccC--CcCChHHhcC------CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 4567788999999886422 2344444444 7999999999999999999999999999999999999999998
Q ss_pred cccCCCCCcEEEEcc---------CC-------------CccchhcccCCCCCCCceecccCCCcccccccccCCCccce
Q 037733 1209 GLHNLRQLREIRISL---------CS-------------KLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLRE 1266 (1450)
Q Consensus 1209 ~l~~l~~L~~L~l~~---------n~-------------~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1266 (1450)
.+.....+..+.+.. +. +.+..+..+..++.+..++++.|.+.+.+|..+..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 877665554433322 11 11223334445566677777778777788888888888888
Q ss_pred EeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCccc
Q 037733 1267 IILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDI 1346 (1450)
Q Consensus 1267 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 1346 (1450)
|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++| ++.| .+|..
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-------~l~g------~ip~~---- 699 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-------KLDG------RIPQA---- 699 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-------CCEE------CCCGG----
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-------cccC------cCChH----
Confidence 888888888888888888888888888888888888888888888888888888 3333 34433
Q ss_pred ccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCC
Q 037733 1347 RLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLK 1394 (1450)
Q Consensus 1347 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1394 (1450)
+..+++|++|++++|++.+.+|.. ..+.++..+.+.+|+.+-
T Consensus 700 -----l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 700 -----MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp -----GGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred -----HhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 345578888888888888888853 445566667777776443
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.3e-46 Score=460.61 Aligned_cols=315 Identities=19% Similarity=0.241 Sum_probs=259.3
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc--cccccccCCcEEEEEeCCcc--CHHHHHHHH
Q 037733 191 YGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN--DDRVQDHFDLKTWTCVSDDF--DVIRLTKAI 266 (1450)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 266 (1450)
|||++++++|.++|... .+...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++++|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999999764 234579999999999999999999998 67899999999999999885 899999999
Q ss_pred HHHhhcCCC------CCCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHH
Q 037733 267 LTSIVAGQN------VDNHDLNKLQVELNKQLSGK-KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAE 339 (1450)
Q Consensus 267 ~~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 339 (1450)
+.+++.... .+..+.+.++..+++.++++ ||||||||||+.+...|... +||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999976521 12335677889999999996 99999999999633234422 7999999999999998
Q ss_pred hcCCC-CceeCCCCCHHHHHHHHHhccCCCC--chhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhccccc
Q 037733 340 IMGTV-PPHPLKELSDNDCLAIFAQHSLGPR--ELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSKIWE 416 (1450)
Q Consensus 340 ~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~ 416 (1450)
.++.. ..|+|++|+++|||+||.++++... ..+.+++++|+++|+|+||||+++|+.|+.+ .+ .|...+.+..+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~ 357 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLES 357 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhc
Confidence 77633 5799999999999999999998765 4778899999999999999999999999876 33 333444444333
Q ss_pred CCccccChhhHHHHhhcCCChhHHHHHh-----------HhccCCCCcccchhHHHHHhhhC--CCccCCCCCCchHHHH
Q 037733 417 LPEERCGIIPALAVSYYYLPPTLRQCFA-----------YCSLLPKDYEFEEEEIILLWCAS--GFLDHKESENPSEDLG 483 (1450)
Q Consensus 417 ~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~~~~ 483 (1450)
. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.......++++++
T Consensus 358 ~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 358 R--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp H--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred c--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 2 1356889999999999999999999 999999999999 8999999 9998755466788888
Q ss_pred HHHHHHHHhcCCCcccCC-CCCcEEEcHHHHHHHHHhhccceE
Q 037733 484 RDFFKELYSRSFFQQSSN-NTSRFVMHDLINDLAKWAAGEIHF 525 (1450)
Q Consensus 484 ~~~~~~L~~~~l~~~~~~-~~~~~~mHdlv~~~~~~~~~~~~~ 525 (1450)
+ ||++|++|||++.... ...+|+|||+||++|++++.+++.
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8 9999999999998643 456899999999999999887654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-41 Score=439.20 Aligned_cols=365 Identities=17% Similarity=0.055 Sum_probs=280.8
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCC-----CCcc--ccccCC
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALK-----SLPE--AWMCDN 1109 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~-----~~~~--~~~~~~ 1109 (1450)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+ .+..+++|+.|++++|.... .+|. ......
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 357888888888877777778888888888888887776655 56778888888887764322 1221 011147
Q ss_pred CCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCC-ccccccccccccccccCCCCCccEEEecCCCchhhhhhhcC
Q 037733 1110 NSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSN-IRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLD 1187 (1450)
Q Consensus 1110 l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 1187 (1450)
+++|+.|++++|.+.+..+ .+..+++|++|++++|.. +..+.. ..+..+ ..++|+.|++++|.+.+..+..+.
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~-~~f~~~----~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN-ETFVSL----AHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT-TTTGGG----TTSCCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch-hhhccc----ccCcCceEECCCCCCCeEChhhhh
Confidence 8888888888888876554 356678888888887631 111110 001111 115899999999999998889999
Q ss_pred CCCCccEEEeecccCccccC-ccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCc--ccccccccCCCcc
Q 037733 1188 NNTSLERIRIYFCENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENL--KILPSGLHNLHQL 1264 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~--~~~~~~l~~l~~L 1264 (1450)
.+++|+.|++++|.+.+.+| ..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 99999999999999987665 67889999999999999998888888999999999999999875 5678889999999
Q ss_pred ceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCc--------ccccCCCCCceEEEeCCCCccccccccCCCCCc
Q 037733 1265 REIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALP--------KGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGM 1336 (1450)
Q Consensus 1265 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 1336 (1450)
++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|. +
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~--------------l 548 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG--------------F 548 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC--------------C
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC--------------C
Confidence 999999999987777778889999999999999886421 237899999999999993 3
Q ss_pred ccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-C-CccccccccccCCh
Q 037733 1337 VSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-G-LPSSLLRLRLERCP 1414 (1450)
Q Consensus 1337 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~l~~n~ 1414 (1450)
..+|.. .|..+++|++|++++|.+....+..|..+++|+.|++++|.+....+.. . .+++|+.|++++||
T Consensus 549 ~~i~~~--------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 549 DEIPVE--------VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCCTT--------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCHH--------HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 344432 3567789999999999977666667899999999999999654443332 3 56899999999999
Q ss_pred hhHHhhhc-CCCCCCCc
Q 037733 1415 LIGEKCRK-DGGRYRDL 1430 (1450)
Q Consensus 1415 l~~~~c~~-~~~~~~~~ 1430 (1450)
+.+. |.. .+...|-.
T Consensus 621 ~~c~-c~~~~~~~~~~~ 636 (680)
T 1ziw_A 621 FDCT-CESIAWFVNWIN 636 (680)
T ss_dssp CCBC-CCCCSSEECCSS
T ss_pred cccC-CccHHHHHHHHH
Confidence 9775 764 44445543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-39 Score=417.10 Aligned_cols=327 Identities=14% Similarity=0.085 Sum_probs=234.9
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccc-----cC-----CCCCCCCccEEEEccCCCCCCCcccccc
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVS-----FP-----EVALPSKLREIRIDGCDALKSLPEAWMC 1107 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~-----~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 1107 (1450)
++|++|++++|.+.+..|..+..+++|+.|++++|..... ++ .+..+++|++|++++|.+....+..+
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 349 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-- 349 (680)
T ss_dssp TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--
T ss_pred ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh--
Confidence 4556666666666666666666666677776665533211 11 34556677777777776555444433
Q ss_pred CCCCCccEEEeeccCCccc-ccC--C--CCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhh
Q 037733 1108 DNNSSLEILCVLHCQLLTY-IAG--V--QLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESV 1182 (1450)
Q Consensus 1108 ~~l~~L~~L~l~~n~~~~~-~~~--~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~ 1182 (1450)
.++++|++|++++|.+... ++. + ...++|+.|++++|. +... .+..+..+ ++|++|++++|.+.+.+
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~-~~~~~~~l------~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKI-ESDAFSWL------GHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEE-CTTTTTTC------TTCCEEECCSSCCEEEC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeE-ChhhhhCC------CCCCEEeCCCCcCcccc
Confidence 3667777777777654211 111 0 112467777777653 2221 12222222 68999999999887655
Q ss_pred h-hhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCc--cchhcccCCCCCCCceecccCCCccccccccc
Q 037733 1183 A-ERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKL--ESIAERLDNNTSLEKIDTSDCENLKILPSGLH 1259 (1450)
Q Consensus 1183 ~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 1259 (1450)
+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+.+..+..+.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 4 67888999999999999988877888899999999999999876 56788889999999999999998877777789
Q ss_pred CCCccceEeeccCCCccccC--------CCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccC
Q 037733 1260 NLHQLREIILFRCGNLVSFP--------EGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAG 1331 (1450)
Q Consensus 1260 ~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 1331 (1450)
.+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~---------- 571 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN---------- 571 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----------
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC----------
Confidence 99999999999998875422 125678999999999999886444568999999999999983
Q ss_pred CCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCC-CCCCCCeeeccCCCCCCCC
Q 037733 1332 CDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIV-DLQNLTELIIEDCPKLKYF 1396 (1450)
Q Consensus 1332 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~ 1396 (1450)
+..+|.. .|..+++|++|++++|.+....+..+. .+++|+.|++++|++.-.-
T Consensus 572 ----l~~l~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 572 ----LNTLPAS--------VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp ----CCCCCTT--------TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ----CCcCCHh--------HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 3344443 345678999999999987777776676 7899999999999876544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.8e-38 Score=401.82 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=172.6
Q ss_pred CccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEe
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCV 1118 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l 1118 (1450)
+|++|++++|.+.+..+..+..+++|++|++++|.+......+..+++|++|++++|.+....+..+ ..+++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh--hccCcCCEEEC
Confidence 6888999999888777777889999999999999887554577888999999999998766555555 47888888888
Q ss_pred eccCCcccccC--CCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhh--hhhcCCCCCccE
Q 037733 1119 LHCQLLTYIAG--VQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESV--AERLDNNTSLER 1194 (1450)
Q Consensus 1119 ~~n~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~ 1194 (1450)
++|.+....+. +..++ +|++|++++|.+.+.. +..+..+++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~--------------------------------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLE--------------------------------NLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp CSCSSCCBCCSSTTTTCT--------------------------------TCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred CCCCcccccchhhhhccC--------------------------------cCCEEECCCCccccccCcchhcccCCCCCE
Confidence 88877643321 23333 5555555555554433 445666777777
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCccchhc-ccCCCCCCCceecccCCCcccccccccCCCccceEeeccCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAE-RLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCG 1273 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1273 (1450)
|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 77777777666666677777777777777776655443 36667777777777777666666667777777777777776
Q ss_pred Cccc---cCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1274 NLVS---FPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1274 ~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 6542 1234555677777777777777666666666666666666666
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-37 Score=396.81 Aligned_cols=275 Identities=16% Similarity=0.107 Sum_probs=195.3
Q ss_pred CccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
+|++|++++|.+. .+|..+..+++|++|++++|.+....+ .+..+++|++|++++|.+...++...+ ..+++|+.|+
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-ENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEE
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh-hccCcCCEEE
Confidence 4445555555443 344455555555555555555544333 444555555555555554434333322 3555666666
Q ss_pred eeccCCcccc---cCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhh-hcCCCCCcc
Q 037733 1118 VLHCQLLTYI---AGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAE-RLDNNTSLE 1193 (1450)
Q Consensus 1118 l~~n~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~ 1193 (1450)
+++|.+.... ..+..+++|++|++++|. +... .+..+..+ ++|++|++++|.+.+..+. .+..+++|+
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAFKEC------PQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-CTTTTTTC------TTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCc-CCcC-CHHHhcCC------ccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 6666555432 234455666666666542 1111 11122222 6888888888888776544 478899999
Q ss_pred EEEeecccCccccCccccCCCCCcEEEEccCCCccc---hhcccCCCCCCCceecccCCCcccccccccCCCccceEeec
Q 037733 1194 RIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLES---IAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILF 1270 (1450)
Q Consensus 1194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1270 (1450)
+|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 999999999888888899999999999999998763 23567889999999999999888888899999999999999
Q ss_pred cCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1271 RCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1271 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
+|.+.+..|..+..+++| .|++++|++.+..|..+..+++|+.|++++|+..|
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999998888888899999 99999999998888889999999999999997554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.7e-37 Score=390.28 Aligned_cols=240 Identities=15% Similarity=0.113 Sum_probs=131.5
Q ss_pred ccEEEe-ecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEe
Q 037733 1040 LEYLGL-SHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCV 1118 (1450)
Q Consensus 1040 L~~L~L-s~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l 1118 (1450)
++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .++.+..+++|++|++++|.+ +.+| .+ .+++|+.|++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp-~~---~l~~L~~L~l 335 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL-KQFP-TL---DLPFLKSLTL 335 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCCCCCTTCCCSEEEEESCCC-SSCC-CC---CCSSCCEEEE
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccch-hhhhccccccCCEEEcccccC-cccc-cC---CCCccceeec
Confidence 444555 34444444444 666667777777766654 333555566666666666665 4444 22 4566666666
Q ss_pred eccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhh--hhhhcCCCCCccEEE
Q 037733 1119 LHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLES--VAERLDNNTSLERIR 1196 (1450)
Q Consensus 1119 ~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~ 1196 (1450)
++|...... .+..+ ++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 336 ~~n~~~~~~-~~~~l--------------------------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 336 TMNKGSISF-KKVAL--------------------------------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp ESCSSCEEC-CCCCC--------------------------------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred cCCcCccch-hhccC--------------------------------CCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 666433322 11222 3444445544444432 234445555666666
Q ss_pred eecccCccccCccccCCCCCcEEEEccCCCccchh-cccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCc
Q 037733 1197 IYFCENLKNLPSGLHNLRQLREIRISLCSKLESIA-ERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
+++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 66555443 34555556666666666665555444 34555566666666666655555555556666666666666555
Q ss_pred c-ccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1276 V-SFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1276 ~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
+ ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 4 24555555566666666666665555555555555555555555
No 9
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.2e-38 Score=385.62 Aligned_cols=285 Identities=19% Similarity=0.221 Sum_probs=230.6
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCc-EEEEEeCCccCHHHHHHHHHH
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDL-KTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999997632 3689999999999999999999988788999986 999999999998888888777
Q ss_pred HhhcCC---CC--C-----CCCHHHHHHHHHHHh---CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 269 SIVAGQ---NV--D-----NHDLNKLQVELNKQL---SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 269 ~l~~~~---~~--~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
.+.... .. + ..+.+.+...+++.+ ++||+||||||||+. ..|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 543211 00 1 113445566777755 789999999999985 667654 2 689999999999
Q ss_pred HHHHhcCCCCceeCC------CCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCCC-CHHHHHH
Q 037733 336 EVAEIMGTVPPHPLK------ELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKH-DRRVWEG 408 (1450)
Q Consensus 336 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~-~~~~w~~ 408 (1450)
.++..+.....|.++ +|+++|||+||.++.... ..++..+| |+|+||||+++|+.|+.+. ..+.|+.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~---~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC---TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC---HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 998655433456676 999999999999884322 22333333 9999999999999999875 5778875
Q ss_pred HHhcccccCCccccChhhHHHHhhcCCChhH-HHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHHHH
Q 037733 409 VLSSKIWELPEERCGIIPALAVSYYYLPPTL-RQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRDFF 487 (1450)
Q Consensus 409 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 487 (1450)
. ....+..+|++||+.||+++ |+||+|||+||+++.|+.+.++.+|+++| ++.++.++
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L 408 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVV 408 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHH
Confidence 3 12468999999999999999 99999999999999999999999999887 13488999
Q ss_pred HHHHhcCCCcccCCCCCcEEEcHHHHHHH
Q 037733 488 KELYSRSFFQQSSNNTSRFVMHDLINDLA 516 (1450)
Q Consensus 488 ~~L~~~~l~~~~~~~~~~~~mHdlv~~~~ 516 (1450)
++|+++|||+.. ++..+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEe-CCCCEEEehHHHHHHh
Confidence 999999999974 3456899999999965
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-37 Score=390.82 Aligned_cols=515 Identities=16% Similarity=0.137 Sum_probs=313.7
Q ss_pred ccccEEEecCCCCCcCC-cCccCCCccceeeccCCCcccc-cccccccCCccEEecCCCCchhHh-hhhhhhhcccCccc
Q 037733 596 QRLRVFSLCGYHISKLP-DSIGDLRYLRYLNLSGTGIRTL-PESVNKLYNLHTLLLNDCHQLKKL-CADMEDLIRLHHLK 672 (1450)
Q Consensus 596 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~ 672 (1450)
+.|++|+|++|.++.+| ..|+++++||+|+|++|.|+.+ |..|+++++|++|+|++|. +..+ |..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEE
Confidence 57888888888888874 4788888888888888888877 5567888888888888854 4444 77788888888888
Q ss_pred ccCCCCCccCC-CCCCCcccccccCceeccCCCCCCchhccccccCCCceeeccCcCCCChhhhhhhccccccCcceEEE
Q 037733 673 NSNTHSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSGLRELKSLMHLKGTLNISNLENVKHIVDAEEAQLDRKENLEELWL 751 (1450)
Q Consensus 673 l~~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 751 (1450)
+++|. +..+| ..++++++|++|.. .-+.+... ..+..+.++++|+.|++
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L------------------------~~n~l~~~-----~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNV------------------------AHNFIHSC-----KLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEEC------------------------CSSCCCCC-----CCCGGGGTCTTCCEEEC
T ss_pred ccCCc-cccccccccCCCCCCCEEeC------------------------CCCcccce-----echHhHhhcCCCCEEEc
Confidence 88887 66665 55888888887721 11111100 01123455666666666
Q ss_pred EeccCCCCCCCchhhhHHhHhccCCCCC-CcceEEEeccCCCCCCCCCCCCCCCceeEEEEecCCCCC-CCC-CCCCccc
Q 037733 752 RWTRSTNGSASREAEAEEGVFDMLKPHK-NLKHFCISGYGGTKFPTWLGDSSFSNLVALKFEDCGMCT-TLP-SVGQLPS 828 (1450)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~ 828 (1450)
+++....... ..+..+..++ .+..|+++++....+|..... ..+|+.|++++|.... ..| .++.+++
T Consensus 161 s~n~l~~~~~--------~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 161 SYNYIQTITV--------NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp CSSCCCEECT--------TTTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred cCCcceecCh--------hhhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccccc
Confidence 6554321100 0011111111 134666666666655544422 2367777777665431 111 2444444
Q ss_pred ccceeccccccceEeCccccCCCCCCcCcccceeeccCcccccccccCccCCCCCCCCcccEEEeccCcCcccCCCCCCC
Q 037733 829 LKHLALRRMSRVKRLGSQFYGNDSPVPFRCLETLRFENIPEWEDWIPHGSSQGVEGFPKLRELHILRCSKLKGTFPDHLP 908 (1450)
Q Consensus 829 L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 908 (1450)
|+.+.+.... +.+ ...+..+.-..+ .+...+ .++.+.+..+..+.+.+|.
T Consensus 231 L~~l~l~~~~--------~~~------~~~l~~~~~~~~------------~~l~~l-~l~~l~l~~~~~~~~~~~~--- 280 (606)
T 3vq2_A 231 LHVHRLILGE--------FKD------ERNLEIFEPSIM------------EGLCDV-TIDEFRLTYTNDFSDDIVK--- 280 (606)
T ss_dssp CEEEEEEEEC--------CTT------SCCCSCCCGGGG------------TTGGGS-EEEEEEECCCTTCCGGGGS---
T ss_pred cccccccccc--------ccc------CCcccccChHHh------------hhhhhc-cHhheeccccccccccccc---
Confidence 4444442110 000 000000000000 000000 1222222111111111110
Q ss_pred CccEEEEcccCCccccCCCCCCceEEEEcCCCCeeeeccccccCccccccccccccchhccCCCCCCCCccccccccccc
Q 037733 909 ALEMLFIQGCEELSVSVTSLPALCKLEIGGCKKVVWRSATDHIGSQNSVVCKDASKQVFLAGPLKPRLPKLEELELNNIQ 988 (1450)
Q Consensus 909 ~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~l~ 988 (1450)
T Consensus 281 -------------------------------------------------------------------------------- 280 (606)
T 3vq2_A 281 -------------------------------------------------------------------------------- 280 (606)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhcccccccccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEE
Q 037733 989 EQSYIWKSHNGLLQDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIE 1068 (1450)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ 1068 (1450)
+.. +++|+.|++++|.+. .+| .+..+++|++|+
T Consensus 281 ------------~~~---------------------------------l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~ 313 (606)
T 3vq2_A 281 ------------FHC---------------------------------LANVSAMSLAGVSIK-YLE-DVPKHFKWQSLS 313 (606)
T ss_dssp ------------CGG---------------------------------GTTCSEEEEESCCCC-CCC-CCCTTCCCSEEE
T ss_pred ------------ccc---------------------------------CCCCCEEEecCccch-hhh-hccccccCCEEE
Confidence 011 133444444444442 223 444455555555
Q ss_pred eecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccc---ccCCCCCCCccEEEEeCCC
Q 037733 1069 IRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTY---IAGVQLPPSLKRLDIYGCS 1145 (1450)
Q Consensus 1069 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~c~ 1145 (1450)
+++|.+ +.++.+ .+++|++|++++|......+ + ..+++|+.|++++|.+.+. ...+..+++|++|++++|.
T Consensus 314 l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 314 IIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp EESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C--CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred cccccC-cccccC-CCCccceeeccCCcCccchh--h--ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 555554 333333 45555555555553333221 1 2455555555555554433 1223344555566555542
Q ss_pred CccccccccccccccccCCCCCccEEEecCCCchhhhh-hhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccC
Q 037733 1146 NIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVA-ERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLC 1224 (1450)
Q Consensus 1146 ~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1224 (1450)
+.. ++..+..+ ++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 388 -l~~--~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 388 -AII--MSANFMGL------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp -EEE--ECCCCTTC------TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred -ccc--chhhccCC------CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 221 11222222 688899999998888776 67889999999999999999888889999999999999999
Q ss_pred CCcc-chhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCc
Q 037733 1225 SKLE-SIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALP 1303 (1450)
Q Consensus 1225 ~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1303 (1450)
.+.+ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.. +|
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p 537 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SK 537 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EE
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cC
Confidence 9887 478888999999999999999988888889999999999999999998888889999999999999999884 77
Q ss_pred ccccCCC-CCceEEEeCCCCcc
Q 037733 1304 KGLHNLT-SLQELRIIGDSPLC 1324 (1450)
Q Consensus 1304 ~~l~~l~-~L~~L~l~~n~~~~ 1324 (1450)
..+..++ +|+.|++++|+..|
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCC
T ss_pred HhHhhhcccCcEEEccCCCccc
Confidence 7788887 69999999997554
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.5e-36 Score=417.04 Aligned_cols=312 Identities=21% Similarity=0.312 Sum_probs=251.3
Q ss_pred CCCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-cccC-CcEEEEEeCCccC--HH
Q 037733 185 VNKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV-QDHF-DLKTWTCVSDDFD--VI 260 (1450)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~ 260 (1450)
.....||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 445679999999999999997542 35799999999999999999999997543 4445 6788999988543 44
Q ss_pred HHHHHHHHHhhcCCC---CCCCCHHHHHHHHHHHhCCC--cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 261 RLTKAILTSIVAGQN---VDNHDLNKLQVELNKQLSGK--KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
..++.++..+..... ....+.+++...++..+.++ |+||||||||+. ..|..+ ++||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 556677777765432 13456788899999999877 999999999976 445443 5799999999999
Q ss_pred HHHHh-cCCCCceeCCC-CCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhcc
Q 037733 336 EVAEI-MGTVPPHPLKE-LSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSK 413 (1450)
Q Consensus 336 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~ 413 (1450)
.++.. ++....+++++ |+++||++||...++.......+.+++|+++|+|+||||+++|++|+.++. .|+..++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~~~~~l~~l 345 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--RWAYYLRQL 345 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--HHHHHHHHH
Confidence 99854 45567899996 999999999999887666667788999999999999999999999998753 466655443
Q ss_pred cccC----C----ccccChhhHHHHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHH
Q 037733 414 IWEL----P----EERCGIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRD 485 (1450)
Q Consensus 414 ~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 485 (1450)
.... . .....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~ 413 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVED 413 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHH
Confidence 2211 1 1123588999999999999999999999999999999999999999654 466889
Q ss_pred HHHHHHhcCCCcccCC-CCCcEEEcHHHHHHHHHhhccc
Q 037733 486 FFKELYSRSFFQQSSN-NTSRFVMHDLINDLAKWAAGEI 523 (1450)
Q Consensus 486 ~~~~L~~~~l~~~~~~-~~~~~~mHdlv~~~~~~~~~~~ 523 (1450)
++++|+++||++.... ...+|+|||+||++|+..+.++
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999997543 3346999999999999987765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=373.53 Aligned_cols=266 Identities=15% Similarity=0.084 Sum_probs=216.5
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+ .+..+++|+.|++++|.+....+..+ ..+++|+.
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~ 366 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF--KFLEKLQT 366 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS--CSCCCCCE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh--cCCCCCCE
Confidence 4789999999999988888889999999999999998876655 67889999999999998655444444 57999999
Q ss_pred EEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhh-hhhhcCCCCCccE
Q 037733 1116 LCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLES-VAERLDNNTSLER 1194 (1450)
Q Consensus 1116 L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 1194 (1450)
|++++|.+... ..+++|+.|+++++ .+..+ +. .+.+++.|++++|.+.+. .+..+..+++|+.
T Consensus 367 L~Ls~N~l~~i----~~~~~L~~L~l~~N-~l~~l--~~---------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 367 LDLRDNALTTI----HFIPSIPDIFLSGN-KLVTL--PK---------INLTANLIHLSENRLENLDILYFLLRVPHLQI 430 (844)
T ss_dssp EEEETCCSCCC----SSCCSCSEEEEESC-CCCCC--CC---------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred EECCCCCCCcc----cCCCCcchhccCCC-Ccccc--cc---------cccccceeecccCccccCchhhhhhcCCccce
Confidence 99999988753 23788999999986 33322 21 126899999999998763 3344668999999
Q ss_pred EEeecccCccccCc-cccCCCCCcEEEEccCCCc-----cchhcccCCCCCCCceecccCCCcccccccccCCCccceEe
Q 037733 1195 IRIYFCENLKNLPS-GLHNLRQLREIRISLCSKL-----ESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1268 (1450)
|++++|.+.+..+. .+..+++|+.|++++|.+. +..+..+..+++|+.|+|++|.+.+..|..+..+++|++|+
T Consensus 431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred eeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeE
Confidence 99999999865432 4567899999999999986 33445688899999999999998888888899999999999
Q ss_pred eccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1269 LFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1269 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
+++|.+.+..+..+ . ++|+.|++++|++.+..|..+ ++|+.|++++|+..|+
T Consensus 511 Ls~N~l~~l~~~~~-~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 511 LNSNRLTVLSHNDL-P-ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp EESCCCSSCCCCCC-C-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCCCCCCccChhhh-h-ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 99999876544444 3 799999999999999877654 5899999999987764
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=354.05 Aligned_cols=269 Identities=16% Similarity=0.068 Sum_probs=199.5
Q ss_pred ccEEEeecC-CCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEe
Q 037733 1040 LEYLGLSHC-EGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCV 1118 (1450)
Q Consensus 1040 L~~L~Ls~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l 1118 (1450)
++.++++++ .+.+..+..+..+++|+.|++++|.+......+..+ +|++|++++|.+. .+|. ..+++|+.|++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L~l 332 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEEeC
Confidence 444555554 333445555666666666666666655333344445 6677777666643 3333 24566777777
Q ss_pred eccCCcccccCCCCCCCccEEEEeCCCCcccc-ccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1119 LHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTL-TLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1119 ~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
++|......+. ..+++|+.|++++|. +... ..+..+..+ ++|++|++++|.+.+..+. +..+++|++|++
T Consensus 333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l 403 (570)
T 2z63_A 333 TSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGT------TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF 403 (570)
T ss_dssp ESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTC------SCCCEEECCSCSEEEEEEE-EETCTTCCEEEC
T ss_pred cCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccccccc------CccCEEECCCCcccccccc-ccccCCCCEEEc
Confidence 77666544433 456677777777653 2211 112222222 6899999999988776555 888999999999
Q ss_pred ecccCccccC-ccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCc-ccccccccCCCccceEeeccCCCc
Q 037733 1198 YFCENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENL-KILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1198 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
++|.+.+..+ ..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+.
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 9999887655 56889999999999999999888888999999999999999987 578888999999999999999998
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|+..
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 888888999999999999999999877778999999999999999533
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=359.93 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=169.5
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
++|++|++++|.+.+..+..+..+++|+.|++++|.+....+ .+..+++|++|++++|.+.. ++ .+++|+.|
T Consensus 314 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~------~~~~L~~L 386 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH------FIPSIPDI 386 (844)
T ss_dssp SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS------SCCSCSEE
T ss_pred CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc------CCCCcchh
Confidence 467777777777766667777777777777777776654444 46667777777777776432 22 36677778
Q ss_pred EeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhh-hcCCCCCccEE
Q 037733 1117 CVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAE-RLDNNTSLERI 1195 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 1195 (1450)
++++|++..... ...+++.|+++++ .+........+..+ ++|++|++++|.+.+..+. .+..+++|+.|
T Consensus 387 ~l~~N~l~~l~~---~~~~l~~L~ls~N-~l~~l~~~~~~~~l------~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 387 FLSGNKLVTLPK---INLTANLIHLSEN-RLENLDILYFLLRV------PHLQILILNQNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp EEESCCCCCCCC---CCTTCCEEECCSC-CCCSSTTHHHHTTC------TTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred ccCCCCcccccc---cccccceeecccC-ccccCchhhhhhcC------CccceeeCCCCcccccccccccccCCccccc
Confidence 887777764322 2456777777764 34433222222222 6888888888887754332 34567888888
Q ss_pred EeecccCcc-----ccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeec
Q 037733 1196 RIYFCENLK-----NLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILF 1270 (1450)
Q Consensus 1196 ~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1270 (1450)
++++|.+.. ..+..+.++++|++|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..+. ++|+.|+++
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS 534 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence 888888763 3345677888899999999888887777788888999999999887765555554 789999999
Q ss_pred cCCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1271 RCGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1271 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
+|.+.+..|..+ .+|+.|++++|++...
T Consensus 535 ~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 535 RNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp EECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 998887777554 4788899988887653
No 15
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=354.47 Aligned_cols=305 Identities=22% Similarity=0.321 Sum_probs=235.3
Q ss_pred CcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc-cccC-CcEEEEEeCCccCHHHHHH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV-QDHF-DLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 264 (1450)
...||||++++++|.++|... .+..++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 355999999999999999653 235789999999999999999999997655 7889 58999999765 3333333
Q ss_pred H---HHHHhhcCC---CCCCCCHHHHHHHHHHHhCC--CcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH
Q 037733 265 A---ILTSIVAGQ---NVDNHDLNKLQVELNKQLSG--KKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE 336 (1450)
Q Consensus 265 ~---i~~~l~~~~---~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~ 336 (1450)
. ++..+.... .....+.+.....++..+.+ +++||||||||+. ..+. .+ ++|++||||||++.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcH
Confidence 3 334443211 12345677778888887765 7999999999874 3333 22 56899999999998
Q ss_pred HHHhcCCCCceeC---CCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHHHhcc
Q 037733 337 VAEIMGTVPPHPL---KELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGVLSSK 413 (1450)
Q Consensus 337 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~ 413 (1450)
++..+. ...+++ ++|+.+||++||...++.+.....+.+.+|+++|+|+||||+++|+.++.+.. .|...++..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l 345 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQL 345 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHH
Confidence 876543 234444 58999999999999887654455678999999999999999999999987643 577665543
Q ss_pred cccC--------CccccChhhHHHHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCchHHHHHH
Q 037733 414 IWEL--------PEERCGIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENPSEDLGRD 485 (1450)
Q Consensus 414 ~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 485 (1450)
.... ......+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHH
Confidence 2211 11223688899999999999999999999999999999999999999543 245788
Q ss_pred HHHHHHhcCCCcccC-CCCCcEEEcHHHHHHHHHhh
Q 037733 486 FFKELYSRSFFQQSS-NNTSRFVMHDLINDLAKWAA 520 (1450)
Q Consensus 486 ~~~~L~~~~l~~~~~-~~~~~~~mHdlv~~~~~~~~ 520 (1450)
++++|+++||++... +...+|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999999999998643 33457999999999999774
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-32 Score=343.97 Aligned_cols=299 Identities=16% Similarity=0.070 Sum_probs=179.6
Q ss_pred CCccEEEeecCCCcccc--C-cccCCCCcccEEEeecCCCccccC-----CCCCCCCccEEEEccCCCCCCCccc----c
Q 037733 1038 CRLEYLGLSHCEGLVKL--P-QSSLSLSSLRKIEIRNCSSLVSFP-----EVALPSKLREIRIDGCDALKSLPEA----W 1105 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~~~~----~ 1105 (1450)
++|++|++++|.+.+.. + .....+++|+.|++++|.+....+ .+..+++|+.+++++|.+....... -
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 56777888877775531 1 122346777777777776543221 2344566666666666532211000 0
Q ss_pred ccCCCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhh
Q 037733 1106 MCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAER 1185 (1450)
Q Consensus 1106 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 1185 (1450)
....+++|+.|++.++.+...... ..++... ...++|+.|++++|.+.......
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~--------------------~~l~~~~------~~~~~L~~L~l~~n~l~~ip~~~ 329 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLF--------------------YDLSTVY------SLLEKVKRITVENSKVFLVPCSF 329 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGS--------------------CCCCHHH------HHSTTCCEEEEESSCCCCCCHHH
T ss_pred hhhhhcccccccccccccchhhhc--------------------ccchhhh------hhcccceEEEeccCccccCCHHH
Confidence 002333444444444332211000 0000000 11257778888877765332233
Q ss_pred cCCCCCccEEEeecccCccccC---ccccCCCCCcEEEEccCCCccchh--cccCCCCCCCceecccCCCcccccccccC
Q 037733 1186 LDNNTSLERIRIYFCENLKNLP---SGLHNLRQLREIRISLCSKLESIA--ERLDNNTSLEKIDTSDCENLKILPSGLHN 1260 (1450)
Q Consensus 1186 ~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 1260 (1450)
+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 3567888888888888776553 336677888888888888765432 44677788888888888755 56777777
Q ss_pred CCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCC
Q 037733 1261 LHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFP 1340 (1450)
Q Consensus 1261 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 1340 (1450)
+++|++|++++|.+. .+|..+. ++|+.|++++|++.+. ...+++|++|++++|. +..+|
T Consensus 409 ~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~--------------l~~ip 467 (549)
T 2z81_A 409 PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNK--------------LKTLP 467 (549)
T ss_dssp CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSC--------------CSSCC
T ss_pred cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhh----cccCChhcEEECCCCc--------------cCcCC
Confidence 888888888888764 3443332 5788888888877663 2467788888888873 23344
Q ss_pred CCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCC
Q 037733 1341 PEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLK 1394 (1450)
Q Consensus 1341 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1394 (1450)
.. ..+++|++|++++|.+.+..|..+..+++|+.|++++|++..
T Consensus 468 ~~----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 468 DA----------SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CG----------GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred Cc----------ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 31 234677888888877766666667777888888888886543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=343.44 Aligned_cols=248 Identities=15% Similarity=0.114 Sum_probs=175.8
Q ss_pred CccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEe
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCV 1118 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l 1118 (1450)
+|++|++++|.+. .+|..+..+ +|++|++++|.+. .++. ..+++|+.|++++|......+. ..+++|+.|++
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l 354 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDL 354 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEEC
T ss_pred cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc----ccCCCCCEEeC
Confidence 4444555554443 344445555 5666666665554 2222 3455566666666554433332 24566666666
Q ss_pred eccCCcccc---cCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhh-hhcCCCCCccE
Q 037733 1119 LHCQLLTYI---AGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVA-ERLDNNTSLER 1194 (1450)
Q Consensus 1119 ~~n~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 1194 (1450)
++|.+.... ..+..+++|++|++++|. +.. ++..+..+ ++|++|++++|.+.+..+ ..+..+++|++
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~--~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSSNFLGL------EQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEE--EEEEEETC------TTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCc-ccc--cccccccc------CCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 666554431 223345666666666642 221 11112222 688999999988877655 46788999999
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCc-cchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKL-ESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCG 1273 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1273 (1450)
|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999999999888888999999999999999987 5788889999999999999999888888899999999999999999
Q ss_pred CccccCCCCCCCCCcceEeeccCCCcccCc
Q 037733 1274 NLVSFPEGGLPCAKLTRLEISYCKRLQALP 1303 (1450)
Q Consensus 1274 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1303 (1450)
+.+..+..+..+++|+.|++++|++....|
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 988777778889999999999999887654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=330.34 Aligned_cols=248 Identities=16% Similarity=0.147 Sum_probs=167.1
Q ss_pred CCccEEEeecCCCccccCcccC---CCCcccEEEeecCCCccccC-CC-----CCCCCccEEEEccCCCCCCCccccccC
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSL---SLSSLRKIEIRNCSSLVSFP-EV-----ALPSKLREIRIDGCDALKSLPEAWMCD 1108 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~-~~-----~~~~~L~~L~L~~~~~~~~~~~~~~~~ 1108 (1450)
++|+.|++++|.+.+..+..+. .+++|++|++++|.+.+.++ .+ ..+++|+.+++++|.+ .+|...+..
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~ 297 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE 297 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc
Confidence 5677777777766543222111 13577778887777664444 33 5566666666666664 333111100
Q ss_pred --CCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhc
Q 037733 1109 --NNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERL 1186 (1450)
Q Consensus 1109 --~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 1186 (1450)
...+|+.|++++|.+.... .+ . -.++|++|++++|.+.+..+..+
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~------------------------~~---~------~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHML------------------------CP---S------KISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCC------------------------CC---S------SCCCCCEEECCSSCCCTTTTTTC
T ss_pred ccccCceeEEEcCCCcccccc------------------------ch---h------hCCcccEEEeECCccChhhhhhh
Confidence 1134566666655543211 00 0 11578888888888877777778
Q ss_pred CCCCCccEEEeecccCcc--ccCccccCCCCCcEEEEccCCCccchhc-ccCCCCCCCceecccCCCcccccccccCCCc
Q 037733 1187 DNNTSLERIRIYFCENLK--NLPSGLHNLRQLREIRISLCSKLESIAE-RLDNNTSLEKIDTSDCENLKILPSGLHNLHQ 1263 (1450)
Q Consensus 1187 ~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 1263 (1450)
..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+. ++
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 888888888888888876 4556678888888888888888875554 467788888888888887776665553 68
Q ss_pred cceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCccc-ccCCCCCceEEEeCCCCcc
Q 037733 1264 LREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKG-LHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1264 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~ 1324 (1450)
|++|++++|.+. .+|..+..+++|++|++++|++.. +|.. +..+++|+.|++++|+..|
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence 888888888776 677766678888888888888875 5544 7888888888888886443
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.2e-31 Score=331.67 Aligned_cols=98 Identities=23% Similarity=0.253 Sum_probs=83.5
Q ss_pred ccccEEEecCCCCCcC-CcCccCCCccceeeccCCCccccc-ccccccCCccEEecCCCCchhHhhhh-hhhhcccCccc
Q 037733 596 QRLRVFSLCGYHISKL-PDSIGDLRYLRYLNLSGTGIRTLP-ESVNKLYNLHTLLLNDCHQLKKLCAD-MEDLIRLHHLK 672 (1450)
Q Consensus 596 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~ 672 (1450)
+.|++|+|++|.++.+ |..|+++++||+|+|++|.|+.+| ..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5799999999999887 678999999999999999999886 67899999999999996 55555554 99999999999
Q ss_pred ccCCCCCcc--CCCCCCCccccccc
Q 037733 673 NSNTHSLEE--MPLGIGKLTCLQTL 695 (1450)
Q Consensus 673 l~~~~~l~~--lp~~i~~L~~L~~L 695 (1450)
+++|. +.. +|..++++++|++|
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEE
T ss_pred CCCCc-ccccchhhhhhccCCccEE
Confidence 99997 653 45678888888877
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.9e-31 Score=333.65 Aligned_cols=343 Identities=17% Similarity=0.208 Sum_probs=258.4
Q ss_pred cCCccEEEeecCCCccc-----------------cCcccC--CCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCC
Q 037733 1037 SCRLEYLGLSHCEGLVK-----------------LPQSSL--SLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCD 1096 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 1096 (1450)
+++|++|++++|.+.+. +|..+. ++++|++|++++|.+.+.+| .+..+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46888888888888775 788887 88888888888888777666 67778888888888887
Q ss_pred -CCC-CCcccccc----CCCCCccEEEeeccCCccccc--CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCc
Q 037733 1097 -ALK-SLPEAWMC----DNNSSLEILCVLHCQLLTYIA--GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSL 1168 (1450)
Q Consensus 1097 -~~~-~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L 1168 (1450)
+.. .+|..+.. ..+++|++|++++|.+..... .+..+++|+.|++++|. +. ..++ .+..+ ++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~-g~ip-~~~~l------~~L 355 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LE-GKLP-AFGSE------IKL 355 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CE-EECC-CCEEE------EEE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Cc-cchh-hhCCC------CCC
Confidence 554 56655420 123788888888888874333 46777888888888753 22 1222 33333 588
Q ss_pred cEEEecCCCchhhhhhhcCCCCC-ccEEEeecccCccccCccccCCC--CCcEEEEccCCCccchhcccC-------CCC
Q 037733 1169 KFLEVNSCSKLESVAERLDNNTS-LERIRIYFCENLKNLPSGLHNLR--QLREIRISLCSKLESIAERLD-------NNT 1238 (1450)
Q Consensus 1169 ~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~-------~~~ 1238 (1450)
++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 88999888877 66777888888 999999998887 6777766544 889999999988888777777 777
Q ss_pred CCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCC--------CCcceEeeccCCCcccCccccc--C
Q 037733 1239 SLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPC--------AKLTRLEISYCKRLQALPKGLH--N 1308 (1450)
Q Consensus 1239 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l--------~~L~~L~l~~n~~~~~~~~~l~--~ 1308 (1450)
+|+.|++++|.+....+..+..+++|++|++++|.+. .+|...... ++|+.|++++|.+. .+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 8999999998877433344566888999999998887 566544332 28899999999888 4777776 8
Q ss_pred CCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeec------cccCCCccccccCCCCCCC
Q 037733 1309 LTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGI------SRFPNLERLSSSIVDLQNL 1382 (1450)
Q Consensus 1309 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~~~~l~~L 1382 (1450)
+++|+.|+|++|. +..+|..+ ..+++|++|++ ++|.+.+.+|..+..+++|
T Consensus 512 l~~L~~L~Ls~N~--------------l~~ip~~~---------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 512 LPYLVGIDLSYNS--------------FSKFPTQP---------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CTTCCEEECCSSC--------------CSSCCCGG---------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CCCcCEEECCCCC--------------CCCcChhh---------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 8999999999883 22344433 34578899988 4567778889999999999
Q ss_pred CeeeccCCCCCCCCCCCCCccccccccccCChhhH
Q 037733 1383 TELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1383 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 1417 (1450)
++|+|++|.+ +.+|.. ..++|+.|++++|++.+
T Consensus 569 ~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred CEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 9999999976 777765 33799999999998864
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4.1e-30 Score=329.16 Aligned_cols=341 Identities=19% Similarity=0.211 Sum_probs=259.8
Q ss_pred cCCccEEEeecCCCcc-----------------ccCcccC--CCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCC
Q 037733 1037 SCRLEYLGLSHCEGLV-----------------KLPQSSL--SLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCD 1096 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 1096 (1450)
+++|++|+|++|.+.+ .+|..+. ++++|+.|++++|.+...+| .+..+++|+.|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4788999999998877 3788877 89999999999998877776 67788899999999987
Q ss_pred -CCC-CCccccc-----cCCCCCccEEEeeccCCccccc--CCCCCCCccEEEEeCCCCccccccccccccccccCCCCC
Q 037733 1097 -ALK-SLPEAWM-----CDNNSSLEILCVLHCQLLTYIA--GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPS 1167 (1450)
Q Consensus 1097 -~~~-~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~ 1167 (1450)
+.. .+|..+. ...+++|+.|++++|.+...+. .+..+++|+.|++++|. +. .++ .+..+ ++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp-~~~~L------~~ 596 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VR--HLE-AFGTN------VK 596 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CC--BCC-CCCTT------SE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cc--cch-hhcCC------Cc
Confidence 544 4554331 1356689999999998884433 46788889999998863 43 333 33333 68
Q ss_pred ccEEEecCCCchhhhhhhcCCCCC-ccEEEeecccCccccCccccCCCC--CcEEEEccCCCccchhccc---C--CCCC
Q 037733 1168 LKFLEVNSCSKLESVAERLDNNTS-LERIRIYFCENLKNLPSGLHNLRQ--LREIRISLCSKLESIAERL---D--NNTS 1239 (1450)
Q Consensus 1168 L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~---~--~~~~ 1239 (1450)
|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999887 77777888888 999999999887 67777766644 9999999998887655322 2 3458
Q ss_pred CCceecccCCCccccccc-ccCCCccceEeeccCCCccccCCCCCCC--------CCcceEeeccCCCcccCccccc--C
Q 037733 1240 LEKIDTSDCENLKILPSG-LHNLHQLREIILFRCGNLVSFPEGGLPC--------AKLTRLEISYCKRLQALPKGLH--N 1308 (1450)
Q Consensus 1240 L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l--------~~L~~L~l~~n~~~~~~~~~l~--~ 1308 (1450)
|+.|++++|.+. .+|.. +..+++|+.|++++|.+. .+|...... ++|+.|+|++|++. .+|..+. .
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 999999999877 45544 457889999999999876 566554432 28999999999888 5777776 8
Q ss_pred CCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccc------cCCCccccccCCCCCCC
Q 037733 1309 LTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISR------FPNLERLSSSIVDLQNL 1382 (1450)
Q Consensus 1309 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~l~~L 1382 (1450)
+++|+.|+|++|. +..+|..+ ..+++|+.|+|++ |.+.+.+|..+..+++|
T Consensus 752 l~~L~~L~Ls~N~--------------L~~lp~~l---------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 752 LPYLSNMDVSYNC--------------FSSFPTQP---------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CTTCCEEECCSSC--------------CSSCCCGG---------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CCCcCEEEeCCCC--------------CCccchhh---------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 9999999999983 22344332 3457899999876 66777889999999999
Q ss_pred CeeeccCCCCCCCCCCCCCccccccccccCChhhH
Q 037733 1383 TELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1383 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 1417 (1450)
+.|+|++|++ +.+|.. ..++|+.|+|++|++..
T Consensus 809 ~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 9999999976 777775 34699999999998854
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1e-29 Score=327.22 Aligned_cols=250 Identities=14% Similarity=0.094 Sum_probs=169.9
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCC--CccccccCCCCCccE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKS--LPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~l~~L~~ 1115 (1450)
.+|+.|++++|.+....+ ..++.|+.+++.+|...... ....+++|+.|++++|.+... .+..+ ..+.+|+.
T Consensus 328 ~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~--~~~~~L~~ 401 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSD--FGTISLKY 401 (635)
T ss_dssp CCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHH--HSCSCCCE
T ss_pred hhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc-ccccccccccchhhccccccccccccch--hhhhhhhh
Confidence 345566666555432221 23455666666666544322 233456666666666654322 11111 24555666
Q ss_pred EEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhh-hhhcCCCCCccE
Q 037733 1116 LCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESV-AERLDNNTSLER 1194 (1450)
Q Consensus 1116 L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 1194 (1450)
|++..|........+..+ ++|+.+++..|...... ...+..+++++.
T Consensus 402 L~~~~~~~~~~~~~~~~l--------------------------------~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 402 LDLSFNGVITMSSNFLGL--------------------------------EQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp EECCSCSEEEECSCCTTC--------------------------------TTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred hhcccccccccccccccc--------------------------------ccccchhhhhcccccccccccccccccccc
Confidence 666555544333333333 45556666555554433 234667788888
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCc-cchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKL-ESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCG 1273 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1273 (1450)
+++++|.+....+..+..+++|+.|++++|... ...|..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 888888888877788888888999999888755 3466778888899999999998888878888889999999999998
Q ss_pred CccccCCCCCCCCCcceEeeccCCCcccCcccccCC-CCCceEEEeCCCCccc
Q 037733 1274 NLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNL-TSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1274 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~ 1325 (1450)
+.+..+..+..+++|++|+|++|++.+..|..+..+ ++|+.|+|++|+..|+
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 877767677788899999999999988888888887 6899999999976654
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7e-30 Score=318.62 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=176.2
Q ss_pred CCccEEEecCCCchhhhhhhc-----CCCCCccEEEeecccCccccC-ccccCC---CCCcEEEEccCCCccchhcccCC
Q 037733 1166 PSLKFLEVNSCSKLESVAERL-----DNNTSLERIRIYFCENLKNLP-SGLHNL---RQLREIRISLCSKLESIAERLDN 1236 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~ 1236 (1450)
++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~ 322 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSK 322 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSS
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhh
Confidence 478888888888877777776 8889999999999888 444 344333 67999999999876432 1267
Q ss_pred CCCCCceecccCCCcccccccccCCCccceEeeccCCCcc--ccCCCCCCCCCcceEeeccCCCcccCcc-cccCCCCCc
Q 037733 1237 NTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLV--SFPEGGLPCAKLTRLEISYCKRLQALPK-GLHNLTSLQ 1313 (1450)
Q Consensus 1237 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~ 1313 (1450)
+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 8899999999999888888888999999999999998875 4556677788999999999998885654 478889999
Q ss_pred eEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCC
Q 037733 1314 ELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKL 1393 (1450)
Q Consensus 1314 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1393 (1450)
.|++++|. +.+ .+|. ..+++|++|++++|.+. .+|..+..+++|++|++++|++.
T Consensus 403 ~L~Ls~N~-------l~~------~~~~-----------~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 403 SLNMSSNI-------LTD------TIFR-----------CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp EEECCSSC-------CCG------GGGG-----------SCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred EEECcCCC-------CCc------chhh-----------hhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 99999983 111 1111 12368999999999855 78887779999999999999654
Q ss_pred CCCCC--CCCccccccccccCChhhHHhhhc
Q 037733 1394 KYFPE--KGLPSSLLRLRLERCPLIGEKCRK 1422 (1450)
Q Consensus 1394 ~~~~~--~~~~~~L~~L~l~~n~l~~~~c~~ 1422 (1450)
.+|. ...+++|+.|++++|++++. |..
T Consensus 458 -~l~~~~~~~l~~L~~L~l~~N~~~c~-c~~ 486 (520)
T 2z7x_B 458 -SVPDGIFDRLTSLQKIWLHTNPWDCS-CPR 486 (520)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCC-HHH
T ss_pred -ccCHHHhccCCcccEEECcCCCCccc-CCc
Confidence 5665 36678999999999999764 443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5e-30 Score=325.17 Aligned_cols=345 Identities=14% Similarity=0.196 Sum_probs=195.5
Q ss_pred cCcccCCCCcccEEEeecCCCccc-----------------cC-CCC--CCCCccEEEEccCCCCCCCccccccCCCCCc
Q 037733 1054 LPQSSLSLSSLRKIEIRNCSSLVS-----------------FP-EVA--LPSKLREIRIDGCDALKSLPEAWMCDNNSSL 1113 (1450)
Q Consensus 1054 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~-~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 1113 (1450)
+|..+.++++|++|++++|.+... +| .++ .+++|++|++++|.+...+|..+ .++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--KALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--TTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH--hcCCCC
Confidence 455555566666666666665552 22 444 56666666666666555555544 256666
Q ss_pred cEEEeeccC-Ccc-ccc-CCC------CCCCccEEEEeCCCCcccccccc--ccccccccCCCCCccEEEecCCCchhhh
Q 037733 1114 EILCVLHCQ-LLT-YIA-GVQ------LPPSLKRLDIYGCSNIRTLTLPA--KLESLEVGNLPPSLKFLEVNSCSKLESV 1182 (1450)
Q Consensus 1114 ~~L~l~~n~-~~~-~~~-~~~------~~~~L~~L~l~~c~~l~~~~~~~--~~~~l~~~~~~~~L~~L~l~~~~~~~~~ 1182 (1450)
++|++++|. +.+ .+| .+. .+++|+.|++++| .+. .++. .+..+ ++|++|++++|.+.+.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l------~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKM------KKLGMLECLYNQLEGKL 346 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTC------TTCCEEECCSCCCEEEC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccC------CCCCEEeCcCCcCccch
Confidence 666666665 443 222 111 1255666666654 222 2333 33333 45666666666665555
Q ss_pred hhhcCCCCCccEEEeecccCccccCccccCCCC-CcEEEEccCCCccchhcccCCCC--CCCceecccCCCccccccccc
Q 037733 1183 AERLDNNTSLERIRIYFCENLKNLPSGLHNLRQ-LREIRISLCSKLESIAERLDNNT--SLEKIDTSDCENLKILPSGLH 1259 (1450)
Q Consensus 1183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~l~ 1259 (1450)
| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+.+|..+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 5 5555566666666666555 45555556665 666666666655 4454444433 566666666666555555555
Q ss_pred -------CCCccceEeeccCCCccccCCCC-CCCCCcceEeeccCCCcccCccc-ccC-------CCCCceEEEeCCCCc
Q 037733 1260 -------NLHQLREIILFRCGNLVSFPEGG-LPCAKLTRLEISYCKRLQALPKG-LHN-------LTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1260 -------~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~-l~~-------l~~L~~L~l~~n~~~ 1323 (1450)
.+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+.. +|.. +.. +++|+.|++++|.
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-- 499 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNK-- 499 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSC--
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCc--
Confidence 5556666666666554 333322 235566666666666552 3322 221 1256666666652
Q ss_pred cccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeecc------CCCCCCCCC
Q 037733 1324 CDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIE------DCPKLKYFP 1397 (1450)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~------~n~~~~~~~ 1397 (1450)
+..+|..+. ...+++|++|++++|.+.+ +|..+..+++|++|+|+ +|.+.+.+|
T Consensus 500 ------------l~~lp~~~~-------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 500 ------------LTKLSDDFR-------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ------------CCBCCGGGS-------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ------------CCccChhhh-------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 223333211 0256788888888888665 78888888888888884 455566666
Q ss_pred CC-CCccccccccccCChhhHHhhhcCCCCCCCcccCcceeeccccccccc
Q 037733 1398 EK-GLPSSLLRLRLERCPLIGEKCRKDGGRYRDLLTHIPYVWGFEVSTTEI 1447 (1450)
Q Consensus 1398 ~~-~~~~~L~~L~l~~n~l~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1447 (1450)
.. ..+++|+.|++++|.+..- ...+. +.+..+++++|++
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~~i---------p~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIRKV---------NEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCCBC---------CSCCC--TTCCEEECCSCTT
T ss_pred HHHhcCCCCCEEECCCCcCCcc---------CHhHh--CcCCEEECcCCCC
Confidence 54 6678888888888888321 11122 6677888888764
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.9e-29 Score=323.00 Aligned_cols=315 Identities=12% Similarity=0.154 Sum_probs=154.2
Q ss_pred CCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccC-Ccc-ccc--------CCCCCCCccEEEEeCCCCcccccc
Q 037733 1083 LPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQ-LLT-YIA--------GVQLPPSLKRLDIYGCSNIRTLTL 1152 (1450)
Q Consensus 1083 ~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~--------~~~~~~~L~~L~l~~c~~l~~~~~ 1152 (1450)
.+++|++|++++|.+...+|..+ .++++|+.|++++|. +.+ .+| .+..+++|+.|++++| .+. .+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFL--YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGG--GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BC
T ss_pred cCCCCCEEECcCCCCCccChHHH--hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--cc
Confidence 45555555555555444455443 245555555555554 332 111 1223345555555543 222 22
Q ss_pred cc--ccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCC-CcEEEEccCCCccc
Q 037733 1153 PA--KLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQ-LREIRISLCSKLES 1229 (1450)
Q Consensus 1153 ~~--~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~ 1229 (1450)
|. .+..+ ++|++|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+.++++ |++|++++|.+. .
T Consensus 564 p~~~~l~~L------~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 564 PASASLQKM------VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCHHHHTTC------TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CChhhhhcC------CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 22 22222 35555555555544 333 4455555555555555544 44444555555 555555555544 3
Q ss_pred hhcccCCCCC--CCceecccCCCccccccc---cc--CCCccceEeeccCCCccccCCCCC-CCCCcceEeeccCCCccc
Q 037733 1230 IAERLDNNTS--LEKIDTSDCENLKILPSG---LH--NLHQLREIILFRCGNLVSFPEGGL-PCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1230 ~~~~~~~~~~--L~~L~L~~n~~~~~~~~~---l~--~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~ 1301 (1450)
+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+. .+|..+. .+++|+.|+|++|.+..
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~- 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS- 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-
Confidence 4444433322 555555555544433311 11 2234555555555444 2333222 34455555555555442
Q ss_pred CcccccC--------CCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCcccc
Q 037733 1302 LPKGLHN--------LTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLS 1373 (1450)
Q Consensus 1302 ~~~~l~~--------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 1373 (1450)
+|..+.. +++|+.|+|++|. +..+|..+. ...+++|+.|+|++|.+.+ +|
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~--------------L~~lp~~l~-------~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNK--------------LTSLSDDFR-------ATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSC--------------CCCCCGGGS-------TTTCTTCCEEECCSSCCSS-CC
T ss_pred cChHHhccccccccccCCccEEECCCCC--------------CccchHHhh-------hccCCCcCEEEeCCCCCCc-cc
Confidence 3322211 1255555555552 222332210 0145677777777777554 67
Q ss_pred ccCCCCCCCCeeeccC------CCCCCCCCCC-CCccccccccccCChhhHHhhhcCCCCCCCcccCcceeecccccccc
Q 037733 1374 SSIVDLQNLTELIIED------CPKLKYFPEK-GLPSSLLRLRLERCPLIGEKCRKDGGRYRDLLTHIPYVWGFEVSTTE 1446 (1450)
Q Consensus 1374 ~~~~~l~~L~~L~l~~------n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 1446 (1450)
..+..+++|+.|+|++ |.+...+|.. ..+++|+.|++++|++.. . +..+ .+.+..+++++|+
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-----I----p~~l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-----V----DEKL--TPQLYILDIADNP 838 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-----C----CSCC--CSSSCEEECCSCT
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-----c----CHhh--cCCCCEEECCCCC
Confidence 7777777777777765 5455566644 567777778888777721 1 1111 1466777777776
Q ss_pred c
Q 037733 1447 I 1447 (1450)
Q Consensus 1447 ~ 1447 (1450)
+
T Consensus 839 l 839 (876)
T 4ecn_A 839 N 839 (876)
T ss_dssp T
T ss_pred C
Confidence 5
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.9e-28 Score=312.34 Aligned_cols=154 Identities=19% Similarity=0.128 Sum_probs=112.5
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccC-ccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
.+|++|++..|..... +..+..+++|+.+++.+|......+ ..+..+++++.+++++|.+....+..+..+++|+.|+
T Consensus 397 ~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 397 ISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp SCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 4667777766655443 3345677788888887776665443 4566778888888888887777777777778888888
Q ss_pred cccCCCcc-cccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1245 TSDCENLK-ILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1245 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
+++|.... ..|..+..+++|++|++++|.+.+..|..+.++++|++|+|++|++.+..|..+..+++|++|+|++|
T Consensus 476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 88876544 45667777888888888888777777777777788888888888877766667777788888888777
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.9e-28 Score=306.31 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=131.1
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCcc--ccCccccCCCCCcEEEEccCCCccchhc-ccCCCCCCCc
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLK--NLPSGLHNLRQLREIRISLCSKLESIAE-RLDNNTSLEK 1242 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 1242 (1450)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+.+|. .+..+++|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 689999999999988888888999999999999999886 3456788999999999999999875554 5778899999
Q ss_pred eecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCccc-ccCCCCCceEEEeCCC
Q 037733 1243 IDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKG-LHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1243 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~ 1321 (1450)
|++++|.+.+..|..+. ++|++|++++|.+. .+|..+..+++|+.|++++|++.. +|.. +..+++|+.|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 99999998777665544 68999999999876 677777789999999999999886 5554 8999999999999996
Q ss_pred Ccc
Q 037733 1322 PLC 1324 (1450)
Q Consensus 1322 ~~~ 1324 (1450)
..|
T Consensus 509 ~~c 511 (562)
T 3a79_B 509 WDC 511 (562)
T ss_dssp BCC
T ss_pred cCC
Confidence 543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.4e-28 Score=298.08 Aligned_cols=351 Identities=16% Similarity=0.087 Sum_probs=272.2
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC--CCCCCCCccEEEEccCCCCCCCccccccCCCCCcc
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP--EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLE 1114 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~ 1114 (1450)
+++|++|++++|.+.+..|..+.++++|++|++++|.+...++ .+..+++|++|++++|.+....|..+ .++++|+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~ 106 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLE 106 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCC
Confidence 4689999999999988878889999999999999998865543 57888999999999998766666666 4889999
Q ss_pred EEEeeccCCccccc-C--CCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCC--
Q 037733 1115 ILCVLHCQLLTYIA-G--VQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNN-- 1189 (1450)
Q Consensus 1115 ~L~l~~n~~~~~~~-~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-- 1189 (1450)
+|++++|.+.+..+ . +..+++|++|+++++. +........+..+ ++|++|++++|.+.+..+..+..+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNM------RRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGC------TTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCC------CcccEEeCCCCcccccChhhhhcccc
Confidence 99999999876332 2 6678899999999864 3322111113333 689999999999888777666555
Q ss_pred CCccEEEeecccCccccCcc--------ccCCCCCcEEEEccCCCccchhcccCC---CCCCCceecccCCCccccc---
Q 037733 1190 TSLERIRIYFCENLKNLPSG--------LHNLRQLREIRISLCSKLESIAERLDN---NTSLEKIDTSDCENLKILP--- 1255 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~L~~n~~~~~~~--- 1255 (1450)
.+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+.. .++|+.|++++|...+...
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 78999999999887654332 336688999999999998877765543 3789999999886544211
Q ss_pred -------cccc--CCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcccc
Q 037733 1256 -------SGLH--NLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDD 1326 (1450)
Q Consensus 1256 -------~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1326 (1450)
..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---- 335 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL---- 335 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc----
Confidence 1121 236899999999999888888888899999999999999988888899999999999999831
Q ss_pred ccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCcccc
Q 037733 1327 LQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLPSSL 1405 (1450)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L 1405 (1450)
..++. ..+..+++|++|++++|.+....|..+..+++|++|++++|++....+.. ..+++|
T Consensus 336 ----------~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 336 ----------GSIDS--------RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp ----------CEECG--------GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------CCcCh--------hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 11211 23456789999999999987777889999999999999999655433333 678899
Q ss_pred ccccccCChhhHH
Q 037733 1406 LRLRLERCPLIGE 1418 (1450)
Q Consensus 1406 ~~L~l~~n~l~~~ 1418 (1450)
+.|++++|++++.
T Consensus 398 ~~L~l~~N~l~~~ 410 (455)
T 3v47_A 398 QKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCBCCC
T ss_pred cEEEccCCCcccC
Confidence 9999999999754
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.8e-28 Score=291.77 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=43.8
Q ss_pred ccccccEEEecCCCCCcCCcCccCCCccceeeccCCCcc-cccccccccCCccEEecCCCCchhHhhhhhhhhcccCccc
Q 037733 594 KLQRLRVFSLCGYHISKLPDSIGDLRYLRYLNLSGTGIR-TLPESVNKLYNLHTLLLNDCHQLKKLCADMEDLIRLHHLK 672 (1450)
Q Consensus 594 ~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~ 672 (1450)
+.++||+|+++++.+..+|++|++|++|++|++++|.+. .+|.+++++.+|+++++++|. ..+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence 567899999999999889999999999999999999887 789999999999888887763 25678888
Q ss_pred ccCCCCCccCCC
Q 037733 673 NSNTHSLEEMPL 684 (1450)
Q Consensus 673 l~~~~~l~~lp~ 684 (1450)
+++|. +..+|.
T Consensus 78 l~~~~-l~~lp~ 88 (454)
T 1jl5_A 78 LNNLG-LSSLPE 88 (454)
T ss_dssp CTTSC-CSCCCS
T ss_pred ecCCc-cccCCC
Confidence 88886 666664
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-26 Score=290.87 Aligned_cols=359 Identities=16% Similarity=0.077 Sum_probs=256.3
Q ss_pred ccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCC
Q 037733 1004 ICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVA 1082 (1450)
Q Consensus 1004 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 1082 (1450)
+...+.++++++ +++.++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ .+.
T Consensus 30 ~~~~~~l~ls~~-~L~~ip~~-----------~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 30 NELESMVDYSNR-NLTHVPKD-----------LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ---CCEEECTTS-CCCSCCTT-----------SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cCCCcEEEcCCC-CCccCCCC-----------CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 444577888776 56665532 34799999999999988877899999999999999999887655 688
Q ss_pred CCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccc--cCCCCCCCccEEEEeCCCCcccccccccccccc
Q 037733 1083 LPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYI--AGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLE 1160 (1450)
Q Consensus 1083 ~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 1160 (1450)
.+++|++|++++|.+. .+|.. .+++|++|++++|.+.... ..+..+++|++|+++++ .+.... +..+
T Consensus 98 ~l~~L~~L~Ls~N~l~-~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l- 166 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQ-NISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD----LLPV- 166 (562)
T ss_dssp TCTTCCEEECTTSCCC-EECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT----TGGG-
T ss_pred CCCCCCEEECCCCcCC-ccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc----hhhh-
Confidence 8999999999999965 56654 6899999999999988743 35678899999999985 333221 2222
Q ss_pred ccCCCCCc--cEEEecCCCc--hhhhhhhcCCC-----------------------------------------------
Q 037733 1161 VGNLPPSL--KFLEVNSCSK--LESVAERLDNN----------------------------------------------- 1189 (1450)
Q Consensus 1161 ~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l----------------------------------------------- 1189 (1450)
++| ++|++++|.+ .+..+..+..+
T Consensus 167 -----~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 167 -----AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp -----TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred -----hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 355 9999999988 44333332221
Q ss_pred ----------------------------------CCccEEEeecccCccccCccc-----cCCCC---------------
Q 037733 1190 ----------------------------------TSLERIRIYFCENLKNLPSGL-----HNLRQ--------------- 1215 (1450)
Q Consensus 1190 ----------------------------------~~L~~L~l~~n~~~~~~~~~l-----~~l~~--------------- 1215 (1450)
++|++|++++|.+.+.+|..+ .+++.
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh
Confidence 156666666666665555544 33332
Q ss_pred -----------CcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcc--ccCCCC
Q 037733 1216 -----------LREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLV--SFPEGG 1282 (1450)
Q Consensus 1216 -----------L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~ 1282 (1450)
|++|++++|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 344444444332111 11567788888888888777777788888888888888887765 334566
Q ss_pred CCCCCcceEeeccCCCcccCcc-cccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCccccee
Q 037733 1283 LPCAKLTRLEISYCKRLQALPK-GLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSL 1361 (1450)
Q Consensus 1283 ~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 1361 (1450)
..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.. .+ .+|. ..+++|++|
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~------~~~~-----------~l~~~L~~L 455 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML-------TG------SVFR-----------CLPPKVKVL 455 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC-------CG------GGGS-----------SCCTTCSEE
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC-------Cc------chhh-----------hhcCcCCEE
Confidence 7778888888888888774443 477788888888888831 11 1111 122689999
Q ss_pred eccccCCCccccccCCCCCCCCeeeccCCCCCCCCCC--CCCccccccccccCChhhHH
Q 037733 1362 GISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPE--KGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1362 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
++++|.+ +.+|..+..+++|++|++++|++. .+|. ...+++|+.|++++||+.+.
T Consensus 456 ~L~~N~l-~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 456 DLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCC-CCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCcC-cccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9999975 478877779999999999999655 5665 36788999999999998754
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=8.3e-27 Score=281.70 Aligned_cols=300 Identities=24% Similarity=0.269 Sum_probs=158.1
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
++|++|++++|.+.+ +| .+..+++|++|++++|.+.. ++. .+++|++|++++|.+.. +| .+ ..+++|+.|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~--~~~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD--LPPSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC--CcccccEEECcCCcCCc-Cc-cc--cCCCCCCEEE
Confidence 468888888888765 66 58888888888888887764 332 23588888888887544 55 33 4788888888
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+.+.. ..+++|++|++++| .+. .++. +..+ ++|++|++++|.+.+ +|. .+++|++|++
T Consensus 202 l~~N~l~~l~---~~~~~L~~L~l~~n-~l~--~lp~-~~~l------~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l 264 (454)
T 1jl5_A 202 ADNNSLKKLP---DLPLSLESIVAGNN-ILE--ELPE-LQNL------PFLTTIYADNNLLKT-LPD---LPPSLEALNV 264 (454)
T ss_dssp CCSSCCSSCC---CCCTTCCEEECCSS-CCS--SCCC-CTTC------TTCCEEECCSSCCSS-CCS---CCTTCCEEEC
T ss_pred CCCCcCCcCC---CCcCcccEEECcCC-cCC--cccc-cCCC------CCCCEEECCCCcCCc-ccc---cccccCEEEC
Confidence 8888776522 12357777777775 333 2222 2222 577777777776654 222 2467777777
Q ss_pred ecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCC-CccceEeeccCCCcc
Q 037733 1198 YFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNL-HQLREIILFRCGNLV 1276 (1450)
Q Consensus 1198 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~ 1276 (1450)
++|.+.+ +|.. +++|++|++++|.+.+. +. ..++|+.|++++|.+.+ ++ .+ ++|++|++++|.+.+
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence 7777665 4432 36777777777776652 21 12567777777776554 22 22 467777777777654
Q ss_pred ccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCc
Q 037733 1277 SFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPA 1356 (1450)
Q Consensus 1277 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1450)
+|.. +++|+.|++++|.+.. +|. .+++|++|++++|. +.+ +..+| .
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~-------l~~----l~~ip---------------~ 377 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP-------LRE----FPDIP---------------E 377 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-------CSS----CCCCC---------------T
T ss_pred -cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC-------CCc----CCCCh---------------H
Confidence 4433 3677777777777664 554 46777777777772 221 11122 2
Q ss_pred ccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhHH
Q 037733 1357 SLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1357 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
++..|. .|...+.+|.. +++|++|++++|++.+ +|. .|++++.|.+.+|.+.+.
T Consensus 378 ~l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~-~~~--iP~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 378 SVEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLRE-FPD--IPESVEDLRMNSERVVDP 431 (454)
T ss_dssp TCCEEE--CCC---------------------------------------------------
T ss_pred HHHhhh--hcccccccccc---cCcCCEEECCCCcCCc-ccc--chhhHhheeCcCcccCCc
Confidence 333332 34444445542 4789999999997554 332 356788899988887543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5e-26 Score=278.43 Aligned_cols=323 Identities=19% Similarity=0.143 Sum_probs=175.2
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.+... +. + ..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-~--~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI-DP-L--KNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-G--TTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCC-hH-H--cCCCCCCEE
Confidence 3566666666666544332 5566666666666666554433 55666666666666654332 22 2 356666666
Q ss_pred EeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEE
Q 037733 1117 CVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIR 1196 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 1196 (1450)
++++|.+... +.+..+++|+.|++++ ++... + .+..+ ++|++|++++|.+... ..+..+++|++|+
T Consensus 140 ~l~~n~l~~~-~~~~~l~~L~~L~l~~--~~~~~--~-~~~~l------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 140 ELSSNTISDI-SALSGLTSLQQLSFGN--QVTDL--K-PLANL------TTLERLDISSNKVSDI--SVLAKLTNLESLI 205 (466)
T ss_dssp EEEEEEECCC-GGGTTCTTCSEEEEEE--SCCCC--G-GGTTC------TTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ECCCCccCCC-hhhccCCcccEeecCC--cccCc--h-hhccC------CCCCEEECcCCcCCCC--hhhccCCCCCEEE
Confidence 6666655442 3345556666666643 11111 1 12222 4666666666655433 1245566666666
Q ss_pred eecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcc
Q 037733 1197 IYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLV 1276 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1276 (1450)
+++|.+.+..| +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 206 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred ecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 66666554433 45566666666666665542 234556666666666666544332 5566666666666665554
Q ss_pred ccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCc
Q 037733 1277 SFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPA 1356 (1450)
Q Consensus 1277 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1450)
..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|. +.+ ++ .+..++
T Consensus 280 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~-------l~~-------~~----------~~~~l~ 331 (466)
T 1o6v_A 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN-------ISD-------IS----------PVSSLT 331 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC-------CSC-------CG----------GGGGCT
T ss_pred ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc-------CCC-------ch----------hhccCc
Confidence 332 4455666666666666555332 5566666666666662 111 11 012345
Q ss_pred ccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhH
Q 037733 1357 SLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1357 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 1417 (1450)
+|++|++++|.+.+. ..+..+++|+.|++++|++....| ...+++|+.|++++|++++
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 666666666654332 245566666666666665444443 4455566666666666554
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.7e-26 Score=283.00 Aligned_cols=365 Identities=15% Similarity=0.054 Sum_probs=283.3
Q ss_pred cEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEee
Q 037733 1041 EYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVL 1119 (1450)
Q Consensus 1041 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~ 1119 (1450)
+.++.+++.+ ..+|. + .++|++|++++|.+....+ .+..+++|++|++++|.+...++...+ .++++|++|+++
T Consensus 13 ~~~~c~~~~l-~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGL-HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCC-SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEEECT
T ss_pred cccCcCCCCc-ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc-cccccCCEEeCC
Confidence 3466666655 34555 3 3789999999999987655 688999999999999987655544333 589999999999
Q ss_pred ccCCccccc-CCCCCCCccEEEEeCCCCcccccc-ccccccccccCCCCCccEEEecCCCchhhhhhh-cCCCCCccEEE
Q 037733 1120 HCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTL-PAKLESLEVGNLPPSLKFLEVNSCSKLESVAER-LDNNTSLERIR 1196 (1450)
Q Consensus 1120 ~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~ 1196 (1450)
+|.+....+ .+..+++|++|++++|. +..... ...+..+ ++|++|++++|.+.+..|.. +..+++|++|+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPL------TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTC------TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCc------ccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 999987654 56788999999999974 332111 1113333 69999999999998877765 78999999999
Q ss_pred eecccCccccCccccCC--CCCcEEEEccCCCccchhcc--------cCCCCCCCceecccCCCcccccccccC---CCc
Q 037733 1197 IYFCENLKNLPSGLHNL--RQLREIRISLCSKLESIAER--------LDNNTSLEKIDTSDCENLKILPSGLHN---LHQ 1263 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~--------~~~~~~L~~L~L~~n~~~~~~~~~l~~---l~~ 1263 (1450)
+++|.+.+..+..+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+.+..|..+.. .++
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 99999998888777766 79999999999987644332 346689999999999988877766544 389
Q ss_pred cceEeeccCCCccccC----------CCCC--CCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccC
Q 037733 1264 LREIILFRCGNLVSFP----------EGGL--PCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAG 1331 (1450)
Q Consensus 1264 L~~L~l~~n~~~~~~~----------~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 1331 (1450)
|+.|++++|...+... ..+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---------- 310 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE---------- 310 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----------
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc----------
Confidence 9999999986654211 1111 23689999999999999889999999999999999993
Q ss_pred CCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCccccccccc
Q 037733 1332 CDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLPSSLLRLRL 1410 (1450)
Q Consensus 1332 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l 1410 (1450)
+..+++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+....|.. ..+++|+.|++
T Consensus 311 ----l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 311 ----INKIDD--------NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp ----CCEECT--------TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----ccccCh--------hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 222221 23456789999999999987777889999999999999999776665654 77899999999
Q ss_pred cCChhhHHhhhcCCCCCCCcccCcceeeccccccccc
Q 037733 1411 ERCPLIGEKCRKDGGRYRDLLTHIPYVWGFEVSTTEI 1447 (1450)
Q Consensus 1411 ~~n~l~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1447 (1450)
++|.+++. ....+.+++.+..+++++|++
T Consensus 379 ~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 379 DTNQLKSV--------PDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CSSCCSCC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccC--------CHhHhccCCcccEEEccCCCc
Confidence 99998642 223456788888999998876
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=278.54 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=145.0
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 35555555555555555555666666677777666666655666666777777777777666555555666677777777
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
++|.+.+..+..+..+++|++|++++|+..+.++.......+|+.|++++|.+....+..+..+++|+.|+|++|.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---- 259 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP---- 259 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC----
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc----
Confidence 7776666555566667777777777776666666655555677777777777665444556677777777777763
Q ss_pred cccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC--CCcc
Q 037733 1326 DLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK--GLPS 1403 (1450)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~ 1403 (1450)
+..++. ..+..+++|++|++++|.+....|..|..+++|++|+|++|.+ +.++.. ..++
T Consensus 260 ----------l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~ 320 (477)
T 2id5_A 260 ----------ISTIEG--------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVG 320 (477)
T ss_dssp ----------CCEECT--------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGGBSCGG
T ss_pred ----------CCccCh--------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeCHhHcCCCc
Confidence 111111 1234456677777777776666666777777777777777743 333332 4566
Q ss_pred ccccccccCChhhH
Q 037733 1404 SLLRLRLERCPLIG 1417 (1450)
Q Consensus 1404 ~L~~L~l~~n~l~~ 1417 (1450)
+|+.|++++|++.+
T Consensus 321 ~L~~L~l~~N~l~c 334 (477)
T 2id5_A 321 NLETLILDSNPLAC 334 (477)
T ss_dssp GCCEEECCSSCEEC
T ss_pred ccCEEEccCCCccC
Confidence 77777777777654
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.2e-25 Score=275.20 Aligned_cols=342 Identities=18% Similarity=0.149 Sum_probs=274.4
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
++++.|++++|.+.. +| .+..+++|++|++++|.+....+ +..+++|++|++++|.+....+ + ..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--L--ANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--h--cCCCCCCEEE
Confidence 578999999988754 45 47889999999999998876554 8889999999999998665544 3 5899999999
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+....+ +..+++|++|++++|. +... + .+..+ ++|++|++++ ...... .+..+++|++|++
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~--~-~~~~l------~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDI--S-ALSGL------TSLQQLSFGN-QVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCC--G-GGTTC------TTCSEEEEEE-SCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCC--h-hhccC------CcccEeecCC-cccCch--hhccCCCCCEEEC
Confidence 99999877544 7788999999999863 3322 1 13333 6999999974 443332 2889999999999
Q ss_pred ecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccc
Q 037733 1198 YFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVS 1277 (1450)
Q Consensus 1198 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1277 (1450)
++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 99998754 358899999999999999887655 67799999999999987653 3678899999999999998765
Q ss_pred cCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcc
Q 037733 1278 FPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPAS 1357 (1450)
Q Consensus 1278 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1450)
.+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|. +.+ ++. +..+++
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-------l~~-------~~~----------~~~l~~ 310 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ-------LED-------ISP----------ISNLKN 310 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-------CSC-------CGG----------GGGCTT
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc-------ccC-------chh----------hcCCCC
Confidence 54 6778999999999999887544 8899999999999993 121 211 346689
Q ss_pred cceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhHHhhhcCCCCCCCcccCccee
Q 037733 1358 LTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGEKCRKDGGRYRDLLTHIPYV 1437 (1450)
Q Consensus 1358 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~c~~~~~~~~~~~~~~~~~ 1437 (1450)
|++|++++|.+.+..| +..+++|++|++++|++ +.++....+++|+.|++++|++++. ..+.+++.+
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L 377 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISDL----------TPLANLTRI 377 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCBC----------GGGTTCTTC
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCcc-CCchhhccCCCCCEEeCCCCccCcc----------chhhcCCCC
Confidence 9999999998776655 78999999999999964 4556667889999999999998653 226777888
Q ss_pred eccccccccc
Q 037733 1438 WGFEVSTTEI 1447 (1450)
Q Consensus 1438 ~~~~~~~~~~ 1447 (1450)
..+++++|.+
T Consensus 378 ~~L~l~~n~~ 387 (466)
T 1o6v_A 378 TQLGLNDQAW 387 (466)
T ss_dssp CEEECCCEEE
T ss_pred CEEeccCCcc
Confidence 8888887765
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=274.52 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=218.9
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
+++++.|++++|.+.+..+..|..+++|++|++++|.+....+ .+..+++|++|++++|.+....+..+ .++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF--TGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS--TTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc--cCCCCCCE
Confidence 4688999999999988778889999999999999998876655 67888999999999998554333333 47899999
Q ss_pred EEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccE
Q 037733 1116 LCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLER 1194 (1450)
Q Consensus 1116 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1194 (1450)
|++++|.+....+ .+..+++|++|+++++. +.... +..+..+ ++|++|++++|.+.+..+..+..+++|+.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYIS-HRAFSGL------NSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEEC-TTSSTTC------TTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCc-cceeC-hhhccCC------CCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 9999998876544 45667788888887742 32211 1122222 57888888888777766667777888888
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 88888887776666777788888888888777776666665666788888888876654445677778888888888877
Q ss_pred ccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCC
Q 037733 1275 LVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPL 1354 (1450)
Q Consensus 1275 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1354 (1450)
.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|. +..+|. ..|..
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~--------~~~~~ 318 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ--------------LTTLEE--------SVFHS 318 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC--------------CSCCCG--------GGBSC
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc--------------CceeCH--------hHcCC
Confidence 76666667777788888888888777767777777888888887772 222222 12344
Q ss_pred CcccceeeccccCCCc
Q 037733 1355 PASLTSLGISRFPNLE 1370 (1450)
Q Consensus 1355 ~~~L~~L~l~~n~~~~ 1370 (1450)
+++|++|++++|+...
T Consensus 319 l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 319 VGNLETLILDSNPLAC 334 (477)
T ss_dssp GGGCCEEECCSSCEEC
T ss_pred CcccCEEEccCCCccC
Confidence 5677777777776543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.2e-25 Score=260.70 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=206.9
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
++|++|++++|.+.. ++ .+..+++|++|++++|.+.... .+..+++|++|++++|.+.. ++ .+ ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~-~~~~l~~L~~L~L~~n~i~~-~~-~~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITD-IS-AL--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CG-GG--TTCTTCSEEE
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccch-hhhcCCcCCEEEccCCcccC-ch-HH--cCCCcCCEEE
Confidence 567777777777643 33 3667788888888887665433 36677778888887776433 33 22 4677777777
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+....+ +..++ +|++|++++|......+. +..+++|++|++
T Consensus 117 l~~n~i~~~~~-~~~l~--------------------------------~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l 162 (347)
T 4fmz_A 117 LNEDNISDISP-LANLT--------------------------------KMYSLNLGANHNLSDLSP-LSNMTGLNYLTV 162 (347)
T ss_dssp CTTSCCCCCGG-GTTCT--------------------------------TCCEEECTTCTTCCCCGG-GTTCTTCCEEEC
T ss_pred CcCCcccCchh-hccCC--------------------------------ceeEEECCCCCCcccccc-hhhCCCCcEEEe
Confidence 77776654322 33344 455555555544433332 566777777777
Q ss_pred ecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccc
Q 037733 1198 YFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVS 1277 (1450)
Q Consensus 1198 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1277 (1450)
++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+...
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC
Confidence 7777664432 6677778888888777665433 6677788888888877655433 67778888888888877644
Q ss_pred cCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcc
Q 037733 1278 FPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPAS 1357 (1450)
Q Consensus 1278 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1450)
.+ +..+++|++|++++|.+... ..+..+++|+.|++++|. +. .+ ..+..+++
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~-------l~-------~~----------~~~~~l~~ 288 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ-------IS-------DI----------SVLNNLSQ 288 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC-------CC-------CC----------GGGGGCTT
T ss_pred cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc-------cC-------CC----------hhhcCCCC
Confidence 33 66678888888888877663 357788888888888883 11 11 12345678
Q ss_pred cceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhh
Q 037733 1358 LTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLI 1416 (1450)
Q Consensus 1358 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 1416 (1450)
|++|++++|.+....+..+..+++|++|++++|++....| ...+++|+.|++++|+++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 9999999998877888888999999999999997655444 667889999999999985
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=6.3e-25 Score=265.47 Aligned_cols=338 Identities=17% Similarity=0.105 Sum_probs=182.7
Q ss_pred ccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCC
Q 037733 1002 QDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEV 1081 (1450)
Q Consensus 1002 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 1081 (1450)
..+++|+.|+++++ .++.++. ...+++|++|++++|.+.+. | +..+++|++|++++|.+... .+
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~~~----------l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~ 102 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDMTG----------IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DV 102 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCCTT----------GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CC
T ss_pred hHcCCCCEEEccCC-CcccChh----------hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ec
Confidence 44566666666654 3333310 11235677777777766542 2 56666777777777665543 25
Q ss_pred CCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccc
Q 037733 1082 ALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEV 1161 (1450)
Q Consensus 1082 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 1161 (1450)
+.+++|++|++++|.+.. ++ + ..+++|++|++++|.+.+. .+..+++|+.|++++|..+..+. +..+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~--~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~----~~~l-- 169 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--V--SQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD----VTPQ-- 169 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--C--TTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCC----CTTC--
T ss_pred CCCCcCCEEECCCCcCCe-ec--C--CCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccc----cccC--
Confidence 566677777777766443 33 2 3566777777777766553 24456666666666654443321 1111
Q ss_pred cCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCC
Q 037733 1162 GNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLE 1241 (1450)
Q Consensus 1162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 1241 (1450)
++|++|++++|.+.+. + +..+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| +..+++|+
T Consensus 170 ----~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 170 ----TQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp ----TTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred ----CcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 4666666666665552 2 55666666666666666543 25566666666666666665 33 55666666
Q ss_pred ceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1242 KIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1242 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
.|++++|.+.+..+ ..+++|+.|++++| +|+.|++++|...+.+| +..+++|+.|++++|.
T Consensus 237 ~L~l~~N~l~~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 237 YFDCSVNPLTELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp EEECCSSCCSCCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred EEEeeCCcCCCcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 66666666555332 22333333332221 33444444444444333 3445555555555553
Q ss_pred CccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC--
Q 037733 1322 PLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-- 1399 (1450)
Q Consensus 1322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-- 1399 (1450)
.. ..+|.....+.... +...++|++|++++|.+.+ ++ +..+++|+.|++++|++.. ++..
T Consensus 298 ~l-------------~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l~~L~~ 359 (457)
T 3bz5_A 298 QL-------------YLLDCQAAGITELD-LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-FSSVGK 359 (457)
T ss_dssp TC-------------CEEECTTCCCSCCC-CTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-CTTGGG
T ss_pred cc-------------ceeccCCCcceEec-hhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-cccccc
Confidence 11 11111111111111 2233678888888887655 33 7778888888888885443 3221
Q ss_pred -----------CCccccccccccCChhhHH
Q 037733 1400 -----------GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1400 -----------~~~~~L~~L~l~~n~l~~~ 1418 (1450)
..+.+|..+++++|.+++.
T Consensus 360 L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 360 IPALNNNFEAEGQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp SSGGGTSEEEEEEEEECCCBCCBTTBEEEE
T ss_pred ccccCCcEEecceeeecCccccccCcEEEE
Confidence 1234566777777777653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-24 Score=259.37 Aligned_cols=308 Identities=13% Similarity=0.071 Sum_probs=215.8
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
++++.|++++|.+....+..+..+++|++|++++|.+....+ .+..+++|++|++++|.+....+..+ ..+++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCEE
Confidence 567777777776644333345667778888887777665544 56677777777777777554444433 367777777
Q ss_pred EeeccCCcccccCC-CCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEE
Q 037733 1117 CVLHCQLLTYIAGV-QLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERI 1195 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1195 (1450)
++++|.+....+.. ..+ ++|++|++++|.+.+..+..+..+++|++|
T Consensus 123 ~L~~n~l~~l~~~~~~~l--------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNT--------------------------------PKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp ECCSSCCCCCCTTTTTTC--------------------------------TTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred ECCCCccCcCCHHHhcCC--------------------------------CCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 77777665332211 122 466666666666666666667778888888
Q ss_pred EeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCc
Q 037733 1196 RIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1196 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
++++|.+.+. .+..+++|+.|++++|.+.+. ...++|++|++++|.+... |. ...++|+.|++++|.+.
T Consensus 171 ~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 171 QLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp ECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCC
T ss_pred ECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCc
Confidence 8888877654 245677888888888876642 2345788888888876543 32 23478888888888876
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCC
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLP 1355 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1450)
+. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|. +..+|.. +..+
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~---------~~~l 294 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------------LVALNLY---------GQPI 294 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC--------------CCEEECS---------SSCC
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc--------------CcccCcc---------cCCC
Confidence 53 356667889999999988888777888888999999998883 2222221 2345
Q ss_pred cccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhHH
Q 037733 1356 ASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1356 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
++|++|++++|.+. .+|..+..+++|++|++++|++ +.++ ...+++|+.|++++|++.+.
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i-~~~~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLK-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC-CCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc-ceeC-chhhccCCEEEcCCCCccch
Confidence 78999999999744 6777788899999999999965 4444 45678999999999999876
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.6e-24 Score=256.57 Aligned_cols=304 Identities=15% Similarity=0.118 Sum_probs=181.1
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
++|++|++++|.+.+. | .+..+++|++|++++|.+... + +..+++|++|++++|.+.. ++ + ..+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~-~~--~--~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTN-LD--V--TPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSC-CC--C--TTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCce-ee--c--CCCCcCCEEE
Confidence 6788888888887653 4 577888888888888877653 3 6777888888888887544 33 2 4678888888
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+.+. + +..+++|++|++++ |.+.+. .+..+++|++|++
T Consensus 113 L~~N~l~~l-~-~~~l~~L~~L~l~~--------------------------------N~l~~l---~l~~l~~L~~L~l 155 (457)
T 3bz5_A 113 CDTNKLTKL-D-VSQNPLLTYLNCAR--------------------------------NTLTEI---DVSHNTQLTELDC 155 (457)
T ss_dssp CCSSCCSCC-C-CTTCTTCCEEECTT--------------------------------SCCSCC---CCTTCTTCCEEEC
T ss_pred CCCCcCCee-c-CCCCCcCCEEECCC--------------------------------Ccccee---ccccCCcCCEEEC
Confidence 888876653 2 44455555555554 443332 1334455555555
Q ss_pred ecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccc
Q 037733 1198 YFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVS 1277 (1450)
Q Consensus 1198 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1277 (1450)
++|...+.+ .+..+++|++|++++|.+.+ +| +..+++|+.|++++|.+.+. .+..+++|++|++++|.+.+
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 555433333 24445555555555555444 22 44455555555555554432 24455555555555555543
Q ss_pred cCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcc
Q 037733 1278 FPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPAS 1357 (1450)
Q Consensus 1278 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1450)
+| +..+++|+.|++++|++.+.. +..+++|+.|++++|.. ..+.++++. ....+| +..+++
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L--~~L~l~~n~-~~~~~~-----------~~~l~~ 287 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL--LEIDLTHNT-QLIYFQ-----------AEGCRK 287 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCC--SCCCCTTCT-TCCEEE-----------CTTCTT
T ss_pred cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCC--CEEECCCCc-cCCccc-----------cccccc
Confidence 33 444455555555555554421 33444444444444421 111111111 011222 235689
Q ss_pred cceeeccccCCCccccc--------cCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhH
Q 037733 1358 LTSLGISRFPNLERLSS--------SIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1358 L~~L~l~~n~~~~~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 1417 (1450)
|+.|++++|...+.+|. .+..+++|++|++++|.+.. ++ .+.+++|+.|++++|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEEECCCCCCCC
Confidence 99999999988777664 25667899999999996555 54 6678999999999999865
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-24 Score=272.02 Aligned_cols=308 Identities=13% Similarity=0.080 Sum_probs=205.6
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
++++.+++++|.+....+..+..+++|+.|++++|.+....+ .+..+++|++|++++|.+....+..+ .++++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCCEE
Confidence 467777777777655444456677788888888877765554 66777778888888777555444433 367777777
Q ss_pred EeeccCCcccccCC-CCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEE
Q 037733 1117 CVLHCQLLTYIAGV-QLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERI 1195 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1195 (1450)
++++|.+....+.. ..+ ++|++|++++|.+.+..+..+..+++|++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l--------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNT--------------------------------PKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp ECCSSCCCCCCTTTTTTC--------------------------------TTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred EeeCCCCCCCCHHHhccC--------------------------------CCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 77777665433221 222 456666666666666666667777777777
Q ss_pred EeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCc
Q 037733 1196 RIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1196 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
++++|.+.+. .+..+++|+.|++++|.+.+. ...++|+.|++++|.+.... ..+ .++|+.|++++|.+.
T Consensus 177 ~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 177 QLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLT 245 (597)
T ss_dssp ECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCC
T ss_pred ECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCC
Confidence 7777776653 244567777777777766542 23456777888777754432 222 357788888887776
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCC
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLP 1355 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1450)
+. ..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|. +..+|.. +..+
T Consensus 246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~l~~~---------~~~l 300 (597)
T 3oja_B 246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------------LVALNLY---------GQPI 300 (597)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC--------------CCEEECS---------SSCC
T ss_pred CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC--------------CCCCCcc---------cccC
Confidence 42 455667788888888888777777777888888888888773 1222221 1345
Q ss_pred cccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhHH
Q 037733 1356 ASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1356 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
++|++|+|++|.+. .+|..+..+++|++|+|++|++.. ++ ...+++|+.|++++|++.+.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC-hhhcCCCCEEEeeCCCCCCh
Confidence 67888888888754 567777788888888888886543 33 34567888888888888765
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.1e-23 Score=247.45 Aligned_cols=305 Identities=16% Similarity=0.129 Sum_probs=178.6
Q ss_pred ccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCC
Q 037733 1002 QDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEV 1081 (1450)
Q Consensus 1002 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 1081 (1450)
..+++|+.|.++++. ++.++. ...+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++.+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~----------~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQG----------IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISAL 106 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTT----------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGG
T ss_pred hhcccccEEEEeCCc-cccchh----------hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-chHH
Confidence 467788888888764 333321 1235799999999998865433 8899999999999997764 5678
Q ss_pred CCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccc
Q 037733 1082 ALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEV 1161 (1450)
Q Consensus 1082 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 1161 (1450)
..+++|++|++++|.+.. ++. + ..+++|+.|++++|......+.+..+++|++|++++|. +.... . +..+
T Consensus 107 ~~l~~L~~L~l~~n~i~~-~~~-~--~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~--~-~~~l-- 176 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISD-ISP-L--ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVT--P-IANL-- 176 (347)
T ss_dssp TTCTTCSEEECTTSCCCC-CGG-G--TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCG--G-GGGC--
T ss_pred cCCCcCCEEECcCCcccC-chh-h--ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCch--h-hccC--
Confidence 889999999999998654 333 3 58999999999999777666666666777777776653 21111 0 1111
Q ss_pred cCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCC
Q 037733 1162 GNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLE 1241 (1450)
Q Consensus 1162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 1241 (1450)
++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 177 ----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 177 ----TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246 (347)
T ss_dssp ----TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ----CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence 455555555555443222 4445555555555555443322 4445555555555555443222 44445555
Q ss_pred ceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1242 KIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1242 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
+|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..|..+..+
T Consensus 247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------ 310 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL------------ 310 (347)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTC------------
T ss_pred EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcc------------
Confidence 555555543331 2344444455555544444322 123334444444444444444333344444
Q ss_pred CccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCC
Q 037733 1322 PLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPK 1392 (1450)
Q Consensus 1322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1392 (1450)
++|++|++++|++....| +..+++|++|++++|++
T Consensus 311 ----------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 311 ----------------------------------TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ----------------------------------TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ----------------------------------ccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 455555555555444434 66778888888888864
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.8e-24 Score=247.11 Aligned_cols=227 Identities=14% Similarity=0.114 Sum_probs=200.1
Q ss_pred CCccEEEecC-CCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1166 PSLKFLEVNS-CSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1166 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5788888884 777777888888999999999999999988999999999999999999999988888899999999999
Q ss_pred cccCCCcccccccccCCC-ccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1245 TSDCENLKILPSGLHNLH-QLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
+++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-- 232 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-- 232 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE--
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc--
Confidence 999998888898998888 999999999999888888888876 9999999999998888899999999999999993
Q ss_pred cccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCcc
Q 037733 1324 CDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPS 1403 (1450)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 1403 (1450)
+.+ .+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++...+|....++
T Consensus 233 -----l~~------~~----------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~ 291 (313)
T 1ogq_A 233 -----LAF------DL----------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291 (313)
T ss_dssp -----ECC------BG----------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGG
T ss_pred -----eee------ec----------CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcccc
Confidence 222 01 113456899999999999888999999999999999999998888899888889
Q ss_pred ccccccccCChhh
Q 037733 1404 SLLRLRLERCPLI 1416 (1450)
Q Consensus 1404 ~L~~L~l~~n~l~ 1416 (1450)
+|+.|++++|+..
T Consensus 292 ~L~~l~l~~N~~l 304 (313)
T 1ogq_A 292 RFDVSAYANNKCL 304 (313)
T ss_dssp GSCGGGTCSSSEE
T ss_pred ccChHHhcCCCCc
Confidence 9999999999954
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-22 Score=241.40 Aligned_cols=283 Identities=16% Similarity=0.105 Sum_probs=200.1
Q ss_pred ccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCC
Q 037733 1004 ICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVA 1082 (1450)
Q Consensus 1004 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 1082 (1450)
+++++.+.++++ .++.++... ...+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ .+.
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAAL--------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHH--------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCceEEEecCC-chhhCChhH--------hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 456666777664 344443321 1224789999999998877777788899999999999998876655 467
Q ss_pred CCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccc
Q 037733 1083 LPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEV 1161 (1450)
Q Consensus 1083 ~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 1161 (1450)
.+++|++|++++|.+. .+|...+ ..+++|++|++++|.+....+ .+..+++|++|+++++ .+.... +..+
T Consensus 115 ~l~~L~~L~L~~n~l~-~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l-- 185 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS-SLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD----LSLI-- 185 (390)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTT-TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC----GGGC--
T ss_pred CCCCCCEEECCCCccC-cCCHHHh-cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc----cccc--
Confidence 8899999999999855 4444332 478999999999998876554 3566788888888875 333221 1111
Q ss_pred cCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCC
Q 037733 1162 GNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLE 1241 (1450)
Q Consensus 1162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 1241 (1450)
++|++|++++|.+... ...++|++|++++|.+... |.. ..++|++|++++|.+.+. ..+..+++|+
T Consensus 186 ----~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~ 251 (390)
T 3o6n_A 186 ----PSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLV 251 (390)
T ss_dssp ----TTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ----cccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCcc
Confidence 5788888888766532 2346788888888877654 222 246788888888877753 3567777888
Q ss_pred ceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1242 KIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1242 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
+|++++|.+.+..|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSS
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCC
Confidence 88888887777767777788888888888877654 45555667788888888887664 5556677777777777777
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.9e-22 Score=234.83 Aligned_cols=293 Identities=14% Similarity=0.085 Sum_probs=197.2
Q ss_pred CccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
+++.++++++.+. .+|..+. ++|+.|++++|.+....+ .+..+++|++|++++|.+....|..+ ..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCCEEE
Confidence 5666666666653 3444332 567777777776665444 45666777777777776554445444 3566677777
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+..... .++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 107 Ls~n~l~~l~~----------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 107 LSKNQLKELPE----------------------------------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp CCSSCCSBCCS----------------------------------SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCcCCccCh----------------------------------hhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 66665542111 01146777778777777777777888888888888
Q ss_pred ecccCcc--ccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCc
Q 037733 1198 YFCENLK--NLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1198 ~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
++|.+.. ..+..+.++++|++|++++|.+.. +|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 8888753 556778888888888888888775 444332 68888899888877777778888888999999888887
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCC
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLP 1355 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1450)
+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|. +..++..... -.......
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~--------------i~~~~~~~f~--~~~~~~~~ 292 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN--------------ISAIGSNDFC--PPGYNTKK 292 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC--------------CCCCCTTSSS--CSSCCTTS
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc--------------CCccChhhcC--Cccccccc
Confidence 766667777888899999888877 467778888888888888883 2222221100 00001123
Q ss_pred cccceeeccccCCCc--cccccCCCCCCCCeeeccCC
Q 037733 1356 ASLTSLGISRFPNLE--RLSSSIVDLQNLTELIIEDC 1390 (1450)
Q Consensus 1356 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n 1390 (1450)
++|+.|++++|++.. ..|..|..+++|+.+++++|
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 567778888887543 45567777788888888777
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=4.8e-24 Score=245.14 Aligned_cols=250 Identities=17% Similarity=0.152 Sum_probs=206.0
Q ss_pred CCccEEEeecCCCcc--ccCcccCCCCcccEEEeec-CCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCc
Q 037733 1038 CRLEYLGLSHCEGLV--KLPQSSLSLSSLRKIEIRN-CSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSL 1113 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 1113 (1450)
.++++|++++|.+.+ .+|..+..+++|++|++++ |.+...++ .+..+++|++|++++|.+...+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 468899999999987 7888899999999999995 77765555 67778888888888888766777665 378888
Q ss_pred cEEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCC-Cc
Q 037733 1114 EILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNT-SL 1192 (1450)
Q Consensus 1114 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L 1192 (1450)
++|++++|.+.+..+ ..+..+ ++|++|++++|.+.+.+|..+..++ +|
T Consensus 128 ~~L~Ls~N~l~~~~p-------------------------~~~~~l------~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 128 VTLDFSYNALSGTLP-------------------------PSISSL------PNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp CEEECCSSEEESCCC-------------------------GGGGGC------TTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred CEEeCCCCccCCcCC-------------------------hHHhcC------CCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 888888887654222 122222 5788888888888877888888887 89
Q ss_pred cEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccC
Q 037733 1193 ERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRC 1272 (1450)
Q Consensus 1193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1272 (1450)
++|++++|.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence 9999999999888888888887 99999999999888888889999999999999988766654 778899999999999
Q ss_pred CCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1273 GNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1273 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
.+.+.+|..+..+++|+.|++++|++.+.+|.. ..+++|+.|++++|+.+
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 998888888888999999999999999888865 88999999999999633
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.4e-22 Score=235.83 Aligned_cols=292 Identities=14% Similarity=0.068 Sum_probs=197.6
Q ss_pred CccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
+++.++++++.+. .+|..+. ++|+.|++++|.+....+ .+..+++|++|++++|.+....+..+ ..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEE
Confidence 5677777777664 4454442 577777777777665444 56667777777777776554445444 3667777777
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+...... ++++|++|++++|.+....+..+..+++|++|++
T Consensus 109 L~~n~l~~l~~~----------------------------------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 109 ISKNHLVEIPPN----------------------------------LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CCSSCCCSCCSS----------------------------------CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcCCccCcc----------------------------------ccccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 777665431111 1146777777777776666666778888888888
Q ss_pred ecccCcc--ccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCc
Q 037733 1198 YFCENLK--NLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1198 ~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
++|.+.. ..+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 8888753 456667777 88888888888775 444332 68888888888877777677888888888888888887
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCc-ccccCCCCCC
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQ-DIRLGNALPL 1354 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1354 (1450)
+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|. +..++.... .. .....
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~--------------l~~~~~~~~~~~---~~~~~ 292 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN--------------ITKVGVNDFCPV---GFGVK 292 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC--------------CCBCCTTSSSCS---SCCSS
T ss_pred cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC--------------CCccChhHcccc---ccccc
Confidence 766666777888888888888877 477778888888888888883 222222110 00 00012
Q ss_pred CcccceeeccccCCC--ccccccCCCCCCCCeeeccCCC
Q 037733 1355 PASLTSLGISRFPNL--ERLSSSIVDLQNLTELIIEDCP 1391 (1450)
Q Consensus 1355 ~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 1391 (1450)
.++|+.|++++|+.. ...|..|..+++|+.|++++|.
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 457888888888765 4566778888888888888874
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.9e-22 Score=252.68 Aligned_cols=284 Identities=17% Similarity=0.125 Sum_probs=221.6
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ .++.+++|++|++++|.+. .+|...+ .++++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIF-HNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHh-ccCCCCCE
Confidence 4788999999998887777788899999999999998877665 4678899999999999865 4444332 47899999
Q ss_pred EEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccE
Q 037733 1116 LCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLER 1194 (1450)
Q Consensus 1116 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1194 (1450)
|++++|.+.+..+ .+..+++|+.|++++| .+.... +.. + ++|++|++++|.+.+ +...++|+.
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~----~~~-----l-~~L~~L~l~~n~l~~-----l~~~~~L~~ 215 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD----LSL-----I-PSLFHANVSYNLLST-----LAIPIAVEE 215 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC----GGG-----C-TTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC----hhh-----h-hhhhhhhcccCcccc-----ccCCchhhe
Confidence 9999998887665 4667888999999885 333322 111 2 689999999987764 234578999
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
|++++|.+....+. + .++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+
T Consensus 216 L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 216 LDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp EECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred eeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 99999988754332 2 36899999999998863 5678899999999999998888888899999999999999988
Q ss_pred ccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCC
Q 037733 1275 LVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPL 1354 (1450)
Q Consensus 1275 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1354 (1450)
.+ +|..+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|. +..+| +..
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~--------------l~~~~-----------~~~ 343 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS--------------IVTLK-----------LST 343 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSC--------------CCCCC-----------CCT
T ss_pred CC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCC--------------CCCcC-----------hhh
Confidence 65 56667778999999999999885 77778889999999999984 11222 234
Q ss_pred CcccceeeccccCCCc
Q 037733 1355 PASLTSLGISRFPNLE 1370 (1450)
Q Consensus 1355 ~~~L~~L~l~~n~~~~ 1370 (1450)
+++|+.|++++|+...
T Consensus 344 ~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp TCCCSEEECCSSCEEH
T ss_pred cCCCCEEEeeCCCCCC
Confidence 5688889998888654
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=5.9e-26 Score=278.84 Aligned_cols=356 Identities=17% Similarity=0.114 Sum_probs=253.1
Q ss_pred ccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCcc----ccCcccCCCCcccEEEeecCCCccccC
Q 037733 1004 ICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLV----KLPQSSLSLSSLRKIEIRNCSSLVSFP 1079 (1450)
Q Consensus 1004 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~ 1079 (1450)
.++|+.|+++++. ++... ...+...+++|++|++++|.+.. .++..+..+++|++|++++|.+.....
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~-------~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDAR-------WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCC-CCHHH-------HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred Cccceehhhhhcc-cCchh-------HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 3578899997654 44322 12223345899999999999874 346667788999999999998764322
Q ss_pred --CCCCCC----CccEEEEccCCCCC----CCccccccCCCCCccEEEeeccCCccccc-----C-CCCCCCccEEEEeC
Q 037733 1080 --EVALPS----KLREIRIDGCDALK----SLPEAWMCDNNSSLEILCVLHCQLLTYIA-----G-VQLPPSLKRLDIYG 1143 (1450)
Q Consensus 1080 --~~~~~~----~L~~L~L~~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~-~~~~~~L~~L~l~~ 1143 (1450)
....++ +|++|++++|.+.. .++..+ ..+++|++|++++|.+..... . ....++|++|++++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL--RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT--TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH--ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence 112233 79999999998663 234444 488999999999999764321 1 22356899999999
Q ss_pred CCCccccc---cccccccccccCCCCCccEEEecCCCchhhhhhhcC-----CCCCccEEEeecccCccc----cCcccc
Q 037733 1144 CSNIRTLT---LPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLD-----NNTSLERIRIYFCENLKN----LPSGLH 1211 (1450)
Q Consensus 1144 c~~l~~~~---~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~ 1211 (1450)
| .+.... ++..+..+ ++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+.
T Consensus 152 n-~l~~~~~~~l~~~l~~~------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 224 (461)
T 1z7x_W 152 C-SLSAASCEPLASVLRAK------PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224 (461)
T ss_dssp S-CCBGGGHHHHHHHHHHC------TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHhhC------CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence 7 343322 12222333 6999999999998765443332 367999999999998863 466777
Q ss_pred CCCCCcEEEEccCCCccch-----hcccCCCCCCCceecccCCCccc----ccccccCCCccceEeeccCCCccccCCCC
Q 037733 1212 NLRQLREIRISLCSKLESI-----AERLDNNTSLEKIDTSDCENLKI----LPSGLHNLHQLREIILFRCGNLVSFPEGG 1282 (1450)
Q Consensus 1212 ~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 1282 (1450)
.+++|++|++++|.+.... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 8999999999999887532 23334688999999999987653 56777789999999999998754322111
Q ss_pred -----CCCCCcceEeeccCCCccc----CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCC
Q 037733 1283 -----LPCAKLTRLEISYCKRLQA----LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALP 1353 (1450)
Q Consensus 1283 -----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1353 (1450)
.+.++|++|++++|.+... ++..+..+++|+.|++++|....... ..+ ...+.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---------~~l---------~~~l~ 366 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV---------REL---------CQGLG 366 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH---------HHH---------HHHHT
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH---------HHH---------HHHHc
Confidence 1236999999999998865 45667888999999999994211100 000 01111
Q ss_pred -CCcccceeeccccCCCc----cccccCCCCCCCCeeeccCCCCCC
Q 037733 1354 -LPASLTSLGISRFPNLE----RLSSSIVDLQNLTELIIEDCPKLK 1394 (1450)
Q Consensus 1354 -~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~ 1394 (1450)
..++|++|++++|.+.. .++..+..+++|++|++++|++..
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 24689999999998765 778888889999999999997553
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.6e-22 Score=229.64 Aligned_cols=269 Identities=13% Similarity=0.071 Sum_probs=213.2
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ .+..+++|++|++++|.+. .+|..+ .++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~----~~~L~~ 125 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM----PKTLQE 125 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC----CTTCCE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh----cccccE
Confidence 4689999999999987777788999999999999998887645 6788999999999999854 555543 378999
Q ss_pred EEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccE
Q 037733 1116 LCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLER 1194 (1450)
Q Consensus 1116 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1194 (1450)
|++++|.+....+ .+..+++|+.|+++++.--.....+..+..+ ++|++|++++|.+... |..+ .++|++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l------~~L~~L~l~~n~l~~l-~~~~--~~~L~~ 196 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM------KKLSYIRIADTNITTI-PQGL--PPSLTE 196 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC------TTCCEEECCSSCCCSC-CSSC--CTTCSE
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC------CCcCEEECCCCccccC-Cccc--cccCCE
Confidence 9999998876544 3567889999999886432211223333333 6899999999987753 3333 379999
Q ss_pred EEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1195 IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 999999998887888999999999999999998877778888999999999999865 6778889999999999999998
Q ss_pred ccccCCCCCC------CCCcceEeeccCCCcc--cCcccccCCCCCceEEEeCC
Q 037733 1275 LVSFPEGGLP------CAKLTRLEISYCKRLQ--ALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1275 ~~~~~~~~~~------l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n 1320 (1450)
.+..+..+.+ .++|+.|++++|++.. ..|..+..+++|+.+++++|
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 7655444432 3788999999999864 45678899999999999988
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=6.5e-22 Score=230.30 Aligned_cols=286 Identities=15% Similarity=0.098 Sum_probs=182.7
Q ss_pred cccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCCccEEEE
Q 037733 1063 SLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDI 1141 (1450)
Q Consensus 1063 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l 1141 (1450)
+++.++++++.+......+ .++|+.|++++|.+....+..+ .++++|++|++++|.+....+ .+..+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-------- 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIHEKAFSPL-------- 101 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGGSTTC--------
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHh--hCCCCCcEEECCCCccCccCHhHhhCc--------
Confidence 5777777777655322222 3567777777776544333333 356666666666666554322 11122
Q ss_pred eCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEE
Q 037733 1142 YGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRI 1221 (1450)
Q Consensus 1142 ~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 1221 (1450)
++|++|++++|.+.. +|..+. ++|++|++++|.+.+..+..+.++++|++|++
T Consensus 102 ------------------------~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 102 ------------------------RKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp ------------------------TTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred ------------------------CCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 456666666665553 333222 68888888888887665666788888888888
Q ss_pred ccCCCcc--chhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCc
Q 037733 1222 SLCSKLE--SIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRL 1299 (1450)
Q Consensus 1222 ~~n~~~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1299 (1450)
++|.+.. ..+..+..+ +|+.|++++|.+.+ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 8888753 455666666 88888888887554 444433 67888888888887766677777888888888888887
Q ss_pred ccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCC-
Q 037733 1300 QALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVD- 1378 (1450)
Q Consensus 1300 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~- 1378 (1450)
+..+..+..+++|+.|++++|. +..+|..+ ..+++|++|++++|++....+..|..
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~--------------l~~lp~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNK--------------LSRVPAGL---------PDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSC--------------CCBCCTTG---------GGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred cCChhHhhCCCCCCEEECCCCc--------------CeecChhh---------hcCccCCEEECCCCCCCccChhHcccc
Confidence 7666677888888888888873 33444332 34567788888887765544444443
Q ss_pred -----CCCCCeeeccCCCCC--CCCCCC-CCccccccccccCCh
Q 037733 1379 -----LQNLTELIIEDCPKL--KYFPEK-GLPSSLLRLRLERCP 1414 (1450)
Q Consensus 1379 -----l~~L~~L~l~~n~~~--~~~~~~-~~~~~L~~L~l~~n~ 1414 (1450)
.++|+.|++++|+.. ...|.. ..+++|+.|++++|+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356777777777654 222222 456777777777764
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=3.8e-24 Score=262.70 Aligned_cols=279 Identities=14% Similarity=0.130 Sum_probs=124.6
Q ss_pred CCccEEEeecCCCccccCc-ccCCCCcccEEEeecCCCccc----cC-CCCCCCCccEEEEccCCCCCCCccccccCCCC
Q 037733 1038 CRLEYLGLSHCEGLVKLPQ-SSLSLSSLRKIEIRNCSSLVS----FP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNS 1111 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~ 1111 (1450)
++|++|++++|.+...... .+..+++|++|++++|.+... ++ .+..+++|++|++++|.+....+..+. ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL-QGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-HTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH-HHHh
Confidence 4555566655555432222 144455566666665554421 11 233445566666665553322121111 1222
Q ss_pred ----CccEEEeeccCCccc-----ccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchh--
Q 037733 1112 ----SLEILCVLHCQLLTY-----IAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLE-- 1180 (1450)
Q Consensus 1112 ----~L~~L~l~~n~~~~~-----~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-- 1180 (1450)
+|++|++++|.+... ...+..+++|++|++++|. +...........+ ....++|++|++++|.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l--~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGL--LDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHH--TSTTCCCCEEECTTSCCBGGG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHH--hcCCCcceEEECCCCCCCHHH
Confidence 466666666555421 1233445556666655543 2211110000000 0001345666666655543
Q ss_pred --hhhhhcCCCCCccEEEeecccCccccCcccc-----CCCCCcEEEEccCCCccc----hhcccCCCCCCCceecccCC
Q 037733 1181 --SVAERLDNNTSLERIRIYFCENLKNLPSGLH-----NLRQLREIRISLCSKLES----IAERLDNNTSLEKIDTSDCE 1249 (1450)
Q Consensus 1181 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~ 1249 (1450)
.++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 2233444455566666665555432222221 234556666666555432 34444455556666666655
Q ss_pred Ccccc-----cccccCCCccceEeeccCCCccc----cCCCCCCCCCcceEeeccCCCcccCccccc-----CCCCCceE
Q 037733 1250 NLKIL-----PSGLHNLHQLREIILFRCGNLVS----FPEGGLPCAKLTRLEISYCKRLQALPKGLH-----NLTSLQEL 1315 (1450)
Q Consensus 1250 ~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L 1315 (1450)
+.... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 43321 11222355566666665555432 233333345566666666555432221111 12455666
Q ss_pred EEeCC
Q 037733 1316 RIIGD 1320 (1450)
Q Consensus 1316 ~l~~n 1320 (1450)
++++|
T Consensus 319 ~L~~n 323 (461)
T 1z7x_W 319 WVKSC 323 (461)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 66555
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.1e-21 Score=221.88 Aligned_cols=232 Identities=19% Similarity=0.288 Sum_probs=183.9
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEIL 1116 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 1116 (1450)
.++++.|++++|.+. .+|..+..+++|++|++++|.+......+..+++|++|++++|.+. .+|..+ ..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEE
Confidence 468999999999886 6777888899999999999988733336778888999999888865 666655 377888888
Q ss_pred EeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEE
Q 037733 1117 CVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIR 1196 (1450)
Q Consensus 1117 ~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 1196 (1450)
++++|...+..+ ..+.. ..+ +..+..+++|++|+
T Consensus 156 ~L~~n~~~~~~p-----~~~~~--------------------------------~~~---------~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 156 SIRACPELTELP-----EPLAS--------------------------------TDA---------SGEHQGLVNLQSLR 189 (328)
T ss_dssp EEEEETTCCCCC-----SCSEE--------------------------------EC----------CCCEEESTTCCEEE
T ss_pred ECCCCCCccccC-----hhHhh--------------------------------ccc---------hhhhccCCCCCEEE
Confidence 888876654332 11111 111 11244577888888
Q ss_pred eecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcc
Q 037733 1197 IYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLV 1276 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1276 (1450)
+++|.+. .+|..+.++++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+
T Consensus 190 L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 190 LEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp EEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 8888877 677778888888899998888875 55568888899999999988888888888899999999999998888
Q ss_pred ccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1277 SFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1277 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..+
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888899999999999999999999999999999998876
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.2e-21 Score=226.48 Aligned_cols=223 Identities=21% Similarity=0.274 Sum_probs=130.9
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34555555555544 33444445566666666666655 45555566666666666666555 44555566666666666
Q ss_pred ccCCCcccccccccC---------CCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEE
Q 037733 1246 SDCENLKILPSGLHN---------LHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELR 1316 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~---------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 1316 (1450)
++|...+.+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 666555555554432 666666666666554 555555566666666666666664 444566666666666
Q ss_pred EeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCC
Q 037733 1317 IIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYF 1396 (1450)
Q Consensus 1317 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1396 (1450)
+++|.. ...+|.. +..+++|++|++++|...+.+|..+..+++|++|+|++|++++.+
T Consensus 236 Ls~n~~-------------~~~~p~~---------~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 236 LRGCTA-------------LRNYPPI---------FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CTTCTT-------------CCBCCCC---------TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CcCCcc-------------hhhhHHH---------hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 666521 1122222 234456666666666666666666666677777777776666666
Q ss_pred CCC-CCccccccccccCChh
Q 037733 1397 PEK-GLPSSLLRLRLERCPL 1415 (1450)
Q Consensus 1397 ~~~-~~~~~L~~L~l~~n~l 1415 (1450)
|.. +.+++|+.+++..+.+
T Consensus 294 P~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGS
T ss_pred cHHHhhccCceEEeCCHHHH
Confidence 654 5556666666665543
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2e-22 Score=255.98 Aligned_cols=205 Identities=13% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCccEEEecCCCchhh-hhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEcc----------C-CCccc-hhc
Q 037733 1166 PSLKFLEVNSCSKLES-VAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISL----------C-SKLES-IAE 1232 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~----------n-~~~~~-~~~ 1232 (1450)
++|++|++++|.+... +...+..+++|++|+++++-....++..+..+++|++|++++ | .+... ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 4556666666554332 223345556666666653222222223334455566666662 2 22221 222
Q ss_pred ccCCCCCCCceecccCCCcccccccccC-CCccceEeecc---CCCccccC------CCCCCCCCcceEeeccCC--Ccc
Q 037733 1233 RLDNNTSLEKIDTSDCENLKILPSGLHN-LHQLREIILFR---CGNLVSFP------EGGLPCAKLTRLEISYCK--RLQ 1300 (1450)
Q Consensus 1233 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~-l~~L~~L~l~~---n~~~~~~~------~~~~~l~~L~~L~l~~n~--~~~ 1300 (1450)
....+++|++|+++.|.+.+..+..+.. +++|++|++++ |+..+..| ..+..+++|+.|++++|. +..
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 2334556666666555544433333332 55666666642 11111111 112235566666665433 222
Q ss_pred cCcccc-cCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCcc-ccccCCC
Q 037733 1301 ALPKGL-HNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLER-LSSSIVD 1378 (1450)
Q Consensus 1301 ~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~ 1378 (1450)
..+..+ ..+++|+.|++++|... + ..+...+..+++|++|++++|++... ++..+..
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~-------~--------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGES-------D--------------EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSS-------H--------------HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHHHHHHHhCccceEeeccCCCCC-------H--------------HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 222222 23556666666655210 0 00001112335566666666653222 3333445
Q ss_pred CCCCCeeeccCCC
Q 037733 1379 LQNLTELIIEDCP 1391 (1450)
Q Consensus 1379 l~~L~~L~l~~n~ 1391 (1450)
+++|++|+|++|+
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 6666666666665
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.9e-22 Score=252.44 Aligned_cols=383 Identities=11% Similarity=0.028 Sum_probs=250.0
Q ss_pred ccccCccEEEeecCCCcccchhhHHhHHHhhhhhccCC-ccEEEeecCCCcc--ccCcccCCCCcccEEEeecCCCcccc
Q 037733 1002 QDICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCR-LEYLGLSHCEGLV--KLPQSSLSLSSLRKIEIRNCSSLVSF 1078 (1450)
Q Consensus 1002 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~-L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~ 1078 (1450)
..+++|++|++++| .++... ...+...+++ |++|++++|.... .++.....+++|++|++++|.+....
T Consensus 109 ~~~~~L~~L~L~~~-~i~~~~-------~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 109 NNLRQLKSVHFRRM-IVSDLD-------LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HHCTTCCEEEEESC-BCCHHH-------HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hhCCCCCeEEeecc-EecHHH-------HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc
Confidence 46677888888776 333211 1112222233 8888888876211 12222346788888888888654321
Q ss_pred ----C-CCCCCCCccEEEEccCCCCC----CCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEEeCCCCccc
Q 037733 1079 ----P-EVALPSKLREIRIDGCDALK----SLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRT 1149 (1450)
Q Consensus 1079 ----~-~~~~~~~L~~L~L~~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 1149 (1450)
+ ....+++|++|++++|.+.. .++..+ .++++|+.|++++|.+.+....+..+++|++|+++++.....
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA--RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH--HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH--hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc
Confidence 1 22356788888888887642 122222 367888888888887766544555678888888876432211
Q ss_pred -cccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccC-ccccCCCCCcEEEEccCCCc
Q 037733 1150 -LTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLP-SGLHNLRQLREIRISLCSKL 1227 (1450)
Q Consensus 1150 -~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 1227 (1450)
......+. .+++|+.|+++++ ....++..+..+++|++|++++|.+.+... ..+..+++|++|+++++...
T Consensus 259 ~~~~~~~l~------~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 259 MPEKYMNLV------FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp CTTSSSCCC------CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred hHHHHHHhh------ccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence 11111111 2268999999885 344566777789999999999999654432 44678999999999954433
Q ss_pred cchhcccCCCCCCCceeccc----------CCCcc--cccccccCCCccceEeeccCCCccccCCCCCC-CCCcceEeec
Q 037733 1228 ESIAERLDNNTSLEKIDTSD----------CENLK--ILPSGLHNLHQLREIILFRCGNLVSFPEGGLP-CAKLTRLEIS 1294 (1450)
Q Consensus 1228 ~~~~~~~~~~~~L~~L~L~~----------n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~ 1294 (1450)
..++.....+++|++|++++ |...+ .++.....+++|++|+++.|.+.+..+..+.. +++|+.|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 45555557789999999994 44333 23333456899999999888776654444443 7899999997
Q ss_pred ----cCCCccc-----CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccc
Q 037733 1295 ----YCKRLQA-----LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISR 1365 (1450)
Q Consensus 1295 ----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 1365 (1450)
.|.+.+. ++..+..+++|+.|++++|.- .+.+ .........+++|++|++++
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~-----~l~~--------------~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG-----GLTD--------------LGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG-----GCCH--------------HHHHHHHHSCTTCCEEEECS
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC-----CccH--------------HHHHHHHHhCccceEeeccC
Confidence 4455542 344477899999999987620 0000 00001112457899999999
Q ss_pred cCCCc-cccccCCCCCCCCeeeccCCCCCCC-CCCC-CCccccccccccCChhhHHhh
Q 037733 1366 FPNLE-RLSSSIVDLQNLTELIIEDCPKLKY-FPEK-GLPSSLLRLRLERCPLIGEKC 1420 (1450)
Q Consensus 1366 n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~-~~~~~L~~L~l~~n~l~~~~c 1420 (1450)
|.+.. .++..+..+++|++|+|++|++... ++.. ..+++|+.|++++|+++...+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 98665 4566678899999999999984322 2222 357899999999999876643
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.1e-20 Score=229.84 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=160.2
Q ss_pred CCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1165 PPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
|+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35777777777777776677777777788888887777776667777777788888887777766666677777788888
Q ss_pred cccCCCcccccccccCCCccceEeeccCCCccccCC-CCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1245 TSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPE-GGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
|++|.+....+..+..+++|++|++++|+..+.++. .+..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~-- 229 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNH-- 229 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSC--
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCc--
Confidence 887776655555677777788888877665555554 45667778888888777765 33 46777778888887773
Q ss_pred cccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCc
Q 037733 1324 CDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLP 1402 (1450)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~ 1402 (1450)
+..+++ ..+..+++|++|++++|.+....+..|..+++|+.|+|++|.+....+.. ..+
T Consensus 230 ------------l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 230 ------------FPEIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp ------------CSEECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred ------------CcccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 111111 22345567788888888777666777778888888888888544333332 456
Q ss_pred cccccccccCChhhHH
Q 037733 1403 SSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1403 ~~L~~L~l~~n~l~~~ 1418 (1450)
++|+.|++++||+.+.
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 7788888888877543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=7.5e-21 Score=223.44 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=133.7
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchh-cccCCCCCCCceec
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIA-ERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L 1245 (1450)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+ ..+..+++|++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 44444444444444444445555666666666666554333335566666666666666554322 24556666666666
Q ss_pred ccCC-CcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1246 SDCE-NLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1246 ~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
++|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~--- 233 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD--- 233 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB---
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc---
Confidence 6664 233334556666677777777776666666666666777777777776644333334456777777777762
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCc----cccccCCCCCCCCeeeccCCCCCCCCCCC-
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLE----RLSSSIVDLQNLTELIIEDCPKLKYFPEK- 1399 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 1399 (1450)
+.+ ++... + ........++.++++++.+.. .+|..+..+++|++|++++|.+. .+|..
T Consensus 234 ----l~~-------~~~~~--l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 234 ----LDT-------FHFSE--L---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp ----CTT-------CCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ----ccc-------ccccc--c---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 111 11000 0 001223456666666665433 45667778888888888888544 55543
Q ss_pred -CCccccccccccCChhhHH
Q 037733 1400 -GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1400 -~~~~~L~~L~l~~n~l~~~ 1418 (1450)
..+++|+.|++++|++++.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred HhcCCCCCEEEeeCCCccCc
Confidence 5677888888888887653
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=6.3e-21 Score=231.25 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=158.9
Q ss_pred CCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1165 PPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
|++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35677777777777766666777777777777777777766666777777777777777777765555677777777777
Q ss_pred cccCCCcccccccccCCCccceEeeccCCCccccCC-CCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1245 TSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPE-GGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
|++|.+....+..+..+++|++|++++|+..+.++. .+..+++|++|++++|.+.. +| .+..+++|+.|+|++|.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~-- 218 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNH-- 218 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSC--
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCc--
Confidence 777776665555677777777777777655555544 45667777777777777664 44 36777777777777773
Q ss_pred cccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCc
Q 037733 1324 CDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLP 1402 (1450)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~ 1402 (1450)
+..+++ ..|..+++|++|++++|.+....+..|..+++|+.|+|++|.+....+.. ..+
T Consensus 219 ------------l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 219 ------------LSAIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp ------------CCEECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred ------------cCccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 111211 22445567788888887777666777778888888888888544333332 556
Q ss_pred cccccccccCChhhHH
Q 037733 1403 SSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1403 ~~L~~L~l~~n~l~~~ 1418 (1450)
++|+.|++++||+.+.
T Consensus 279 ~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEcCCCCccCC
Confidence 7788888888887543
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-21 Score=221.51 Aligned_cols=229 Identities=17% Similarity=0.081 Sum_probs=130.0
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccc--cCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKN--LPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
++|++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 4556666666655544344455666666666666665522 23344456666666666666553 34445566666666
Q ss_pred ecccCCCccccc-ccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcc-cCcccccCCCCCceEEEeCCC
Q 037733 1244 DTSDCENLKILP-SGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQ-ALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1244 ~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666665544332 345566666666666666655555555556666666666666554 345556666666666666662
Q ss_pred CccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-C
Q 037733 1322 PLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-G 1400 (1450)
Q Consensus 1322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~ 1400 (1450)
+..+++ ..+..+++|++|++++|.+....+..+..+++|++|++++|++....+.. .
T Consensus 187 --------------l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 187 --------------LEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp --------------CCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred --------------cCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 111111 12234456666666666655544445666677777777777555544433 2
Q ss_pred C-ccccccccccCChhhH
Q 037733 1401 L-PSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1401 ~-~~~L~~L~l~~n~l~~ 1417 (1450)
. +++|+.|++++|++++
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 2 2467777777777654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.3e-20 Score=214.62 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=164.5
Q ss_pred cEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCC--CccccccCCCCCccEEE
Q 037733 1041 EYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKS--LPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1041 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~l~~L~~L~ 1117 (1450)
+.++.+++.+. .+|..+. ++|++|++++|.+....+ .+..+++|++|++++|.+... .+..+. .+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--GTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH--SCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc--cccccCEEE
Confidence 35555555543 3444332 567777777776653333 245667777777777764322 123332 466777777
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhh-hhcCCCCCccEEE
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVA-ERLDNNTSLERIR 1196 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~ 1196 (1450)
+++|.+......+..+ ++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 85 Ls~n~i~~l~~~~~~l--------------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 85 LSFNGVITMSSNFLGL--------------------------------EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp CCSCSEEEEEEEEETC--------------------------------TTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred CCCCccccChhhcCCC--------------------------------CCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 7776654322211122 466666666666655443 4566777888888
Q ss_pred eecccCccccCccccCCCCCcEEEEccCCCcc-chhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCc
Q 037733 1197 IYFCENLKNLPSGLHNLRQLREIRISLCSKLE-SIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1197 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
+++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 88887777777777778888888888887765 56677777888888888888877766777778888888888888776
Q ss_pred cccCCCCCCCCCcceEeeccCCCcccCcccccCCC-CCceEEEeCCCC
Q 037733 1276 VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLT-SLQELRIIGDSP 1322 (1450)
Q Consensus 1276 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~ 1322 (1450)
+..+..+..+++|+.|++++|++.+..|..+..++ +|+.|++++|+.
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 65555566678888888888888877777777774 888888888853
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.7e-20 Score=213.09 Aligned_cols=230 Identities=14% Similarity=0.069 Sum_probs=167.4
Q ss_pred CCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCC-CccchhcccCCCCCCCce
Q 037733 1165 PPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCS-KLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L 1243 (1450)
|++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4678888888888877766777888888888888888877767788888888888888887 555556777888888888
Q ss_pred ecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1244 DTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1244 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-- 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc--
Confidence 888888777767778888888888888888776555557778888888888888777555567888888888888873
Q ss_pred cccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCcc
Q 037733 1324 CDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPS 1403 (1450)
Q Consensus 1324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 1403 (1450)
+. .+++ ..+..+++|++|++++|.+....+..+..+++|++|++++|++....+......
T Consensus 189 -----l~-------~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 189 -----VA-------HVHP--------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp -----CC-------EECT--------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred -----cc-------ccCH--------hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 11 1111 223455678888888887666555667888888888888887654433222334
Q ss_pred ccccccccCChhh
Q 037733 1404 SLLRLRLERCPLI 1416 (1450)
Q Consensus 1404 ~L~~L~l~~n~l~ 1416 (1450)
.++.+..+.+.+.
T Consensus 249 ~l~~~~~~~~~~~ 261 (285)
T 1ozn_A 249 WLQKFRGSSSEVP 261 (285)
T ss_dssp HHHHCCSEECCCB
T ss_pred HHHhcccccCccc
Confidence 4555566655554
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=5.3e-20 Score=209.06 Aligned_cols=202 Identities=16% Similarity=0.127 Sum_probs=143.6
Q ss_pred CCccEEEecCCC-chhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1166 PSLKFLEVNSCS-KLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1166 ~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 355555555554 3333355666778888888888888777677788888888888888888776666678888888888
Q ss_pred cccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1245 TSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
+++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 88888766655668888899999999998887778888888899999999999888666678889999999999985332
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCC--CCCCCeeeccCC
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVD--LQNLTELIIEDC 1390 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n 1390 (1450)
+.-.. .....++.+..+.+......|..+.. +..++..++.+|
T Consensus 240 ~~~~~-----------------------~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 240 DCRAR-----------------------PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SGGGH-----------------------HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCCcH-----------------------HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 21100 01123455555566655566655543 445555555555
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=217.75 Aligned_cols=250 Identities=15% Similarity=0.075 Sum_probs=160.5
Q ss_pred cCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1037 SCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ .+..+++|++|++++|.+....+..+ ..+++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCE
Confidence 3567777777777665555566777777777777776665444 46666777777777776543322223 35667777
Q ss_pred EEeeccCCccccc--CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCC-chhhhhhhcCCCCCc
Q 037733 1116 LCVLHCQLLTYIA--GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCS-KLESVAERLDNNTSL 1192 (1450)
Q Consensus 1116 L~l~~n~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L 1192 (1450)
|++++|.+..... .+..+ ++|++|++++|. +....+..+..+++|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l--------------------------------~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHL--------------------------------TKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTC--------------------------------TTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred EECCCCCCcccCchhhhccC--------------------------------CCCcEEECCCCccccccCHHHccCCCCC
Confidence 7777766654322 12233 455666666553 333334556777778
Q ss_pred cEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccc---cCCCccceEee
Q 037733 1193 ERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGL---HNLHQLREIIL 1269 (1450)
Q Consensus 1193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l 1269 (1450)
++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ...+.++.+++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 888888887777767777777888888888877654333334456778888888877665433322 23556777777
Q ss_pred ccCCCcc----ccCCCCCCCCCcceEeeccCCCcccCccc-ccCCCCCceEEEeCCC
Q 037733 1270 FRCGNLV----SFPEGGLPCAKLTRLEISYCKRLQALPKG-LHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1270 ~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~ 1321 (1450)
+++.+.+ .+|..+..+++|+.|++++|++.. +|.. +..+++|++|++++|+
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence 7776654 345555667788888888888775 4444 5788888888888885
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.9e-19 Score=218.99 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=102.5
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccC-ccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
+|++|++++|.+....+..+..+++|+.|++++|...+.++ ..+.++++|++|++++|.+.+. | .+..+++|++|+|
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEM 225 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEEC
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEEC
Confidence 45555555555544444455666666666666655444443 3466677777777777766643 3 3566677777777
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|+|++|++....+..+..+++|+.|+|++|+..|
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 7777766666677777777777777777766666666777777777777777776555666777777777777776444
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=216.62 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=158.3
Q ss_pred EEEeecCCCccccCcccCCCCcccEEEeecCCCccccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeec
Q 037733 1042 YLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLH 1120 (1450)
Q Consensus 1042 ~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1120 (1450)
.++.++..+ ..+|..+. ++++.|++++|.+....+ .+..+++|++|++++|.+....+..+ .++++|++|++++
T Consensus 47 ~v~c~~~~l-~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~--~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNL-REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF--NGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCC-SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG--TTCSSCCEEECCS
T ss_pred EEEeCCCCc-CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc--cCCccCCEEECCC
Confidence 444444433 23444333 456666666665554433 45556666666666665443333333 3566666666666
Q ss_pred cCCcccccC-CCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeec
Q 037733 1121 CQLLTYIAG-VQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYF 1199 (1450)
Q Consensus 1121 n~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 1199 (1450)
|.+....+. +..+ ++|++|++++|.+....+..+..+++|++|++++
T Consensus 122 n~l~~~~~~~~~~l--------------------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 122 NRLTTIPNGAFVYL--------------------------------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SCCSSCCTTTSCSC--------------------------------SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CcCCeeCHhHhhcc--------------------------------ccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 655432221 1111 3556666666665555555666777777777777
Q ss_pred ccCccccC-ccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCcccc
Q 037733 1200 CENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSF 1278 (1450)
Q Consensus 1200 n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1278 (1450)
|+..+.++ ..+.++++|++|++++|.+.. +| .+..+++|++|+|++|.+.+..|..+..+++|++|++++|.+....
T Consensus 170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 65555444 357777888888888887764 33 3667778888888888877777777888888888888888887777
Q ss_pred CCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1279 PEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1279 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
+..+..+++|+.|+|++|++....+..+..+++|+.|+|++|+..|+
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 77777788888888888888776666778888888888888875543
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=4.5e-20 Score=225.23 Aligned_cols=238 Identities=10% Similarity=-0.021 Sum_probs=187.2
Q ss_pred hccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCcc
Q 037733 1035 ELSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLE 1114 (1450)
Q Consensus 1035 ~~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~ 1114 (1450)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+ +..+++|++|++++|.+. .++ ..++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~------~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL------VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE------ECTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC------CCCCcC
Confidence 345688888888888877777788888888888888888765544 667777777777777633 222 235666
Q ss_pred EEEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccE
Q 037733 1115 ILCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLER 1194 (1450)
Q Consensus 1115 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1194 (1450)
.|++++|.+....+. ..++|++|++++|.+.+..+..+..+++|+.
T Consensus 103 ~L~L~~N~l~~~~~~----------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 103 TLHAANNNISRVSCS----------------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp EEECCSSCCCCEEEC----------------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred EEECcCCcCCCCCcc----------------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 666666665432210 0157888999999988888888888999999
Q ss_pred EEeecccCccccCcccc-CCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCC
Q 037733 1195 IRIYFCENLKNLPSGLH-NLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCG 1273 (1450)
Q Consensus 1195 L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1273 (1450)
|++++|.+.+..|..+. .+++|++|++++|.+.+.. ....+++|+.|+|++|.+.+.. ..+..+++|+.|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCc
Confidence 99999999988777775 7999999999999988763 2446899999999999977644 458899999999999999
Q ss_pred CccccCCCCCCCCCcceEeeccCCCc-ccCcccccCCCCCceEEEe
Q 037733 1274 NLVSFPEGGLPCAKLTRLEISYCKRL-QALPKGLHNLTSLQELRII 1318 (1450)
Q Consensus 1274 ~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~ 1318 (1450)
+.+ +|..+..+++|+.|++++|++. +.+|..+..+++|+.++++
T Consensus 226 l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred Ccc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 874 7778888899999999999988 5577788889999988886
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.6e-22 Score=253.97 Aligned_cols=411 Identities=14% Similarity=0.127 Sum_probs=190.3
Q ss_pred cccccCccEEEeecCCCcccchhh------HHhHHHhhhhhccCCccEEEeecCCCccccCcccC-CCCcccEEEeecCC
Q 037733 1001 LQDICSLKRLMIGWCPKLQSLVAE------EEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQSSL-SLSSLRKIEIRNCS 1073 (1450)
Q Consensus 1001 ~~~~~~L~~L~l~~c~~L~~l~~~------~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~l~~~~ 1073 (1450)
+..+++|+.|.+++|+.+..+... ....+...+...+++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 345666777777776655433210 00112223333456777777777766555444443 46777777777774
Q ss_pred Cccc--cC-CCCCCCCccEEEEccCCCCCCCcccc--ccCCCCCccEEEeeccC--Ccc-ccc-CCCCCCCccEEEEeCC
Q 037733 1074 SLVS--FP-EVALPSKLREIRIDGCDALKSLPEAW--MCDNNSSLEILCVLHCQ--LLT-YIA-GVQLPPSLKRLDIYGC 1144 (1450)
Q Consensus 1074 ~~~~--~~-~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~--~~~-~~~-~~~~~~~L~~L~l~~c 1144 (1450)
..+. ++ ....+++|++|++++|.+....+..+ ....+++|+.|++++|. +.. .+. ....+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3322 22 22356777777777776332221111 11356677777777775 110 000 1123567777777776
Q ss_pred CCccccccccccccccccCCCCCccEEEecCCCc------hhhhhhhcCCCCCccEE-EeecccCccccCccccCCCCCc
Q 037733 1145 SNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSK------LESVAERLDNNTSLERI-RIYFCENLKNLPSGLHNLRQLR 1217 (1450)
Q Consensus 1145 ~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~ 1217 (1450)
..+.. ++..+..+ ++|++|+++.|.. ...++..+.++++|+.| .+.+.. ...++..+..+++|+
T Consensus 222 ~~~~~--l~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~ 292 (594)
T 2p1m_B 222 VPLEK--LATLLQRA------PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLT 292 (594)
T ss_dssp SCHHH--HHHHHHHC------TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCC
T ss_pred CcHHH--HHHHHhcC------CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCC
Confidence 44432 33323332 4666666555432 11222334455555555 222211 112222233445555
Q ss_pred EEEEccCCCccc-hhcccCCCCCCCceecccCCCcc-cccccccCCCccceEeeccC---------CCccccCCCC-CCC
Q 037733 1218 EIRISLCSKLES-IAERLDNNTSLEKIDTSDCENLK-ILPSGLHNLHQLREIILFRC---------GNLVSFPEGG-LPC 1285 (1450)
Q Consensus 1218 ~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n---------~~~~~~~~~~-~~l 1285 (1450)
+|++++|.+... +...+..+++|++|++++| +.. .++.....+++|++|++++| .+.......+ ..+
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 555555553322 1222344555555555554 111 11112223455555555221 1111000000 113
Q ss_pred CCcceEeeccCCCcccCccccc-CCCCCceEEEe--C---CCCccc-----ccc--ccCCCCCcccCC--CCCcccccCC
Q 037733 1286 AKLTRLEISYCKRLQALPKGLH-NLTSLQELRII--G---DSPLCD-----DLQ--LAGCDDGMVSFP--PEPQDIRLGN 1350 (1450)
Q Consensus 1286 ~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~--~---n~~~~~-----~~~--~~~~~~~~~~~~--~~~~~~~~~~ 1350 (1450)
++|+.|+++.|.+....+..+. .+++|+.|+++ + |..+.. .+. +.+++. +..+- ..+.+.....
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-L~~L~L~~~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD-LRRLSLSGLLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT-CCEEECCSSCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC-ccEEeecCcccHHHHHH
Confidence 4455554444444332222222 34455555554 1 110000 000 000000 00000 0000000000
Q ss_pred CCCCCcccceeeccccCCCccccccC-CCCCCCCeeeccCCCCCCCCC-CC-CCccccccccccCChhhHHhhhc
Q 037733 1351 ALPLPASLTSLGISRFPNLERLSSSI-VDLQNLTELIIEDCPKLKYFP-EK-GLPSSLLRLRLERCPLIGEKCRK 1422 (1450)
Q Consensus 1351 ~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~-~~-~~~~~L~~L~l~~n~l~~~~c~~ 1422 (1450)
....+++|++|++++|.+.......+ ..+++|++|+|++|++..... .. ..+++|+.|++++|+++...+..
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 01136789999999998655433333 668999999999997632211 12 35789999999999986654443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.3e-18 Score=215.76 Aligned_cols=261 Identities=22% Similarity=0.260 Sum_probs=163.2
Q ss_pred CCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEE
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILC 1117 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~ 1117 (1450)
.+++.|++++|.+. .+|..+. ++|+.|++++|.+.. ++. .+++|++|++++|.+. .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEE
Confidence 35889999999886 6676655 789999999997763 443 5788888888888743 4443 567888888
Q ss_pred eeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEe
Q 037733 1118 VLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRI 1197 (1450)
Q Consensus 1118 l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 1197 (1450)
+++|.+..... .+++|+.|+++ +|.+.. +|. .+++|++|++
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~--------------------------------~N~l~~-lp~---~l~~L~~L~L 148 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIF--------------------------------GNQLTS-LPV---LPPGLQELSV 148 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECC--------------------------------SSCCSC-CCC---CCTTCCEEEC
T ss_pred CcCCcCCCCCC---CCCCcCEEECC--------------------------------CCCCCc-CCC---CCCCCCEEEC
Confidence 88887665322 34445555544 444332 121 1355666666
Q ss_pred ecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccc
Q 037733 1198 YFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVS 1277 (1450)
Q Consensus 1198 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1277 (1450)
++|.+.+ +|. .+++|+.|++++|.+.. +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+. .
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~ 215 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-S 215 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-S
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-c
Confidence 6665553 222 23456666666666554 33 345666777777666443 332 2356777777776654 3
Q ss_pred cCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcc
Q 037733 1278 FPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPAS 1357 (1450)
Q Consensus 1278 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1450)
+|.. +++|+.|++++|.+.+ +| ..+++|+.|++++|. +..+|. .+++
T Consensus 216 l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~--------------L~~lp~------------~~~~ 262 (622)
T 3g06_A 216 LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR--------------LTSLPM------------LPSG 262 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC--------------CSCCCC------------CCTT
T ss_pred cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC--------------CCcCCc------------cccc
Confidence 3332 2567777777776665 44 445677777777772 223332 2457
Q ss_pred cceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCC
Q 037733 1358 LTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYF 1396 (1450)
Q Consensus 1358 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1396 (1450)
|++|++++|.+. .+|..+.++++|+.|+|++|++....
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 777778777644 66777778888888888888765443
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=9.4e-21 Score=218.41 Aligned_cols=239 Identities=10% Similarity=-0.025 Sum_probs=151.5
Q ss_pred ccCCccEEEeecCCCccccCcccCCCCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccE
Q 037733 1036 LSCRLEYLGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1036 ~~~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 1115 (1450)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+....+ +..+++|++|++++|.+. .++ ..++|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~------~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL------VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE------ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc------CCCCcCE
Confidence 34567777777777666555566667777777777766654333 555566666666665532 111 1245555
Q ss_pred EEeeccCCcccccCCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEE
Q 037733 1116 LCVLHCQLLTYIAGVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERI 1195 (1450)
Q Consensus 1116 L~l~~n~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1195 (1450)
|++++|.+....+. . .++|++|++++|.+.+..+..+..+++|++|
T Consensus 104 L~l~~n~l~~~~~~---------------------------------~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 104 LHAANNNISRVSCS---------------------------------R-GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (317)
T ss_dssp EECCSSCCSEEEEC---------------------------------C-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEE
T ss_pred EECCCCccCCcCcc---------------------------------c-cCCCCEEECCCCCCCCccchhhhccCCCCEE
Confidence 55555544321110 0 1467777777777776666667777778888
Q ss_pred EeecccCccccCccc-cCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCC
Q 037733 1196 RIYFCENLKNLPSGL-HNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1196 ~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
++++|.+.+..+..+ ..+++|++|++++|.+.+. + ....+++|++|++++|.+.+. |..+..+++|++|++++|.+
T Consensus 150 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCC
T ss_pred ECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcc
Confidence 888877776655554 3677788888888777654 2 223467778888887776543 34477777777777777776
Q ss_pred ccccCCCCCCCCCcceEeeccCCCc-ccCcccccCCCCCceEEEeCC
Q 037733 1275 LVSFPEGGLPCAKLTRLEISYCKRL-QALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1275 ~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
. .+|..+..+++|+.|++++|++. +.+|..+..+++|+.|++++|
T Consensus 227 ~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp C-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred c-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 5 45666666777777777777776 445666666666666666644
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.3e-20 Score=213.79 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=135.0
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence 467777777777666666666777777777777777665443 666777777777777655422 2357777777
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccc-cCCCCCceEEEeCCCCcc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGL-HNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~ 1324 (1450)
++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~--- 180 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--- 180 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC---
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc---
Confidence 77766554332 24667777777777766555566666777777777777766554444 356777777777773
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCcc
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLPS 1403 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~ 1403 (1450)
+..+|.. ..+++|++|++++|.+. .+|..+..+++|++|++++|++. .+|.. ..++
T Consensus 181 -----------l~~~~~~----------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 181 -----------IYDVKGQ----------VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp -----------CCEEECC----------CCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred -----------Ccccccc----------cccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 1111111 13466777777777644 34444667777777777777543 34433 5566
Q ss_pred ccccccccCChhh
Q 037733 1404 SLLRLRLERCPLI 1416 (1450)
Q Consensus 1404 ~L~~L~l~~n~l~ 1416 (1450)
+|+.|++++|++.
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 7777777777776
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=8.2e-19 Score=198.15 Aligned_cols=209 Identities=15% Similarity=0.079 Sum_probs=166.7
Q ss_pred CCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1164 LPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
+|++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45789999999998887777788889999999999999887777788899999999999999988777888899999999
Q ss_pred ecccCCCcccccccccCCCccceEeeccCCCccc-cCCCCCCCCCcceEeeccCCCcccCcccccCCCCCc----eEEEe
Q 037733 1244 DTSDCENLKILPSGLHNLHQLREIILFRCGNLVS-FPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQ----ELRII 1318 (1450)
Q Consensus 1244 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~ 1318 (1450)
++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 9999987776666788899999999999988763 577788889999999999998887666777666666 78888
Q ss_pred CCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCC
Q 037733 1319 GDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1319 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1395 (1450)
+|. +..++... + ...+|++|++++|.+....+..+..+++|++|++++|++...
T Consensus 186 ~n~--------------l~~~~~~~--------~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 186 LNP--------------MNFIQPGA--------F-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SSC--------------CCEECTTS--------S-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCc--------------ccccCccc--------c-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 883 22233221 1 223788899998886655555678888899999988876543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=4.7e-20 Score=212.04 Aligned_cols=204 Identities=15% Similarity=0.095 Sum_probs=152.4
Q ss_pred CCCCccEEEeecccCccccCccc--cCCCCCcEEEEccCCCccchhcccCCC-----CCCCceecccCCCcccccccccC
Q 037733 1188 NNTSLERIRIYFCENLKNLPSGL--HNLRQLREIRISLCSKLESIAERLDNN-----TSLEKIDTSDCENLKILPSGLHN 1260 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~ 1260 (1450)
.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 57888888888888887777765 7888888888888888775 5555554 78899999988887777778888
Q ss_pred CCccceEeeccCCCccc--cCCCC--CCCCCcceEeeccCCCccc--Cc-ccccCCCCCceEEEeCCCCccccccccCCC
Q 037733 1261 LHQLREIILFRCGNLVS--FPEGG--LPCAKLTRLEISYCKRLQA--LP-KGLHNLTSLQELRIIGDSPLCDDLQLAGCD 1333 (1450)
Q Consensus 1261 l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~l~~n~~~~~--~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 1333 (1450)
+++|++|++++|.+.+. ++..+ ..+++|++|++++|.+... ++ ..+..+++|+.|++++|. +.+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~-- 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-------LRD-- 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-------CCS--
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-------CCc--
Confidence 88999999988887654 22222 6678899999999988742 22 345678899999999883 222
Q ss_pred CCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCC
Q 037733 1334 DGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERC 1413 (1450)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 1413 (1450)
.++ ...+..+++|++|++++|.+. .+|..+. ++|++|++++|++ +.+|....+++|+.|++++|
T Consensus 243 -----~~~-------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 243 -----AAG-------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp -----SCC-------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTC
T ss_pred -----ccc-------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC-CCChhHhhCCCCCEEeccCC
Confidence 110 012334678999999999865 6777666 8899999999964 44466677888999999999
Q ss_pred hhhH
Q 037733 1414 PLIG 1417 (1450)
Q Consensus 1414 ~l~~ 1417 (1450)
++++
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8864
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=8.1e-21 Score=241.43 Aligned_cols=350 Identities=15% Similarity=0.091 Sum_probs=212.3
Q ss_pred cccCccEEEeecCCCcccchhhHHhHHHhhhhhccCCccEEEeecCCCccccCc----ccCCCCcccEEEeecCC--Ccc
Q 037733 1003 DICSLKRLMIGWCPKLQSLVAEEEKDQQQQLCELSCRLEYLGLSHCEGLVKLPQ----SSLSLSSLRKIEIRNCS--SLV 1076 (1450)
Q Consensus 1003 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~~~~----~~~~l~~L~~L~l~~~~--~~~ 1076 (1450)
.+++|+.|.+++|..++.. ....+...+++|++|++++|.+.+..+. ....+++|++|++++|. +..
T Consensus 128 ~~~~L~~L~L~~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HCTTCCEEEEESCEEEEHH-------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred hCCCCcEEeCCCcCCCCHH-------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 5678888888888765532 1222333457888888888875543332 33367789999998886 110
Q ss_pred -ccC-CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCC-------cccccCCCCCCCccEEEEeCCCCc
Q 037733 1077 -SFP-EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQL-------LTYIAGVQLPPSLKRLDIYGCSNI 1147 (1450)
Q Consensus 1077 -~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~-------~~~~~~~~~~~~L~~L~l~~c~~l 1147 (1450)
.+. ....+++|++|++++|.....++..+ ..+++|+.|+++.+.. .+..+.+..+++|+.|. ++...
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~~~ 276 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFWDA 276 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--CCBTC
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--CCccc
Confidence 111 12346888999998885444444433 3678888888766542 11222334566777762 22222
Q ss_pred cccccccccccccccCCCCCccEEEecCCCchhh-hhhhcCCCCCccEEEeecccCcc-ccCccccCCCCCcEEEEcc--
Q 037733 1148 RTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLES-VAERLDNNTSLERIRIYFCENLK-NLPSGLHNLRQLREIRISL-- 1223 (1450)
Q Consensus 1148 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~-- 1223 (1450)
....++.....+ ++|++|++++|.+... +...+..+++|++|++++| +.. .++.....+++|++|++++
T Consensus 277 ~~~~l~~~~~~~------~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 277 VPAYLPAVYSVC------SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSE 349 (594)
T ss_dssp CGGGGGGGHHHH------TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSC
T ss_pred chhhHHHHHHhh------CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCc
Confidence 222233222223 6899999999986543 3344678899999999988 332 2233334588899999844
Q ss_pred -------CCCccchhcc-cCCCCCCCceecccCCCccccccccc-CCCccceEeec-----cCCCccccCC------CCC
Q 037733 1224 -------CSKLESIAER-LDNNTSLEKIDTSDCENLKILPSGLH-NLHQLREIILF-----RCGNLVSFPE------GGL 1283 (1450)
Q Consensus 1224 -------n~~~~~~~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~-----~n~~~~~~~~------~~~ 1283 (1450)
+.+....... ...+++|+.|.+..|.+.......+. .+++|+.|+++ +|...+..|. .+.
T Consensus 350 ~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~ 429 (594)
T 2p1m_B 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429 (594)
T ss_dssp TTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh
Confidence 2333322222 23478899998877776654444443 57889999998 3333332221 134
Q ss_pred CCCCcceEeeccCCCcccCcccccC-CCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceee
Q 037733 1284 PCAKLTRLEISYCKRLQALPKGLHN-LTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLG 1362 (1450)
Q Consensus 1284 ~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 1362 (1450)
.+++|+.|++++ .+....+..+.. +++|+.|++++|..... ........+++|++|+
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~---------------------~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL---------------------GMHHVLSGCDSLRKLE 487 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH---------------------HHHHHHHHCTTCCEEE
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH---------------------HHHHHHhcCCCcCEEE
Confidence 467899999977 444443334444 88899999998831100 0000112357899999
Q ss_pred ccccCCCcccc-ccCCCCCCCCeeeccCCCC
Q 037733 1363 ISRFPNLERLS-SSIVDLQNLTELIIEDCPK 1392 (1450)
Q Consensus 1363 l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~ 1392 (1450)
+++|++..... .....+++|++|++++|+.
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99998744332 3455688999999999975
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.5e-19 Score=220.63 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=157.7
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..| +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 478888888888877777778888888888888888776554 7788888888888887765332 268888888
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCccccc-CCCCCceEEEeCCCCcc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLH-NLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~ 1324 (1450)
++|.+.+..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+|++|.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~--- 180 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--- 180 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC---
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc---
Confidence 88887665443 357788888888888777777777778888888888888877666665 68888888888883
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCC-CCCcc
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPE-KGLPS 1403 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~ 1403 (1450)
+.+ +|. ...+++|++|+|++|.+.+ +|..+..+++|+.|++++|.+.. +|. ...++
T Consensus 181 ----l~~-------~~~----------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 181 ----IYD-------VKG----------QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp ----CCE-------EEC----------CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred ----ccc-------ccc----------cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 111 111 1245788888888887554 44457788888888888886544 444 36677
Q ss_pred ccccccccCChhhH
Q 037733 1404 SLLRLRLERCPLIG 1417 (1450)
Q Consensus 1404 ~L~~L~l~~n~l~~ 1417 (1450)
+|+.|++++|++++
T Consensus 238 ~L~~L~l~~N~l~c 251 (487)
T 3oja_A 238 NLEHFDLRGNGFHC 251 (487)
T ss_dssp TCCEEECTTCCBCH
T ss_pred CCCEEEcCCCCCcC
Confidence 88888888888863
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=5.3e-18 Score=210.44 Aligned_cols=259 Identities=22% Similarity=0.172 Sum_probs=192.3
Q ss_pred CcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCCCccEEEE
Q 037733 1062 SSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPPSLKRLDI 1141 (1450)
Q Consensus 1062 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 1141 (1450)
.+++.|++++|.+......+ +++|++|++++|.+. .+|. .+++|++|++++|.+..... .+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l--~~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l-------- 100 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV---LP-------- 100 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC--CTTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC---CC--------
T ss_pred CCCcEEEecCCCcCccChhh--CCCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC---CC--------
Confidence 45888888888876333223 278888888888744 4443 35777777777776543211 22
Q ss_pred eCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEE
Q 037733 1142 YGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRI 1221 (1450)
Q Consensus 1142 ~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 1221 (1450)
++|++|++++|.+.+... .+++|+.|++++|.+.. +|.. +++|++|++
T Consensus 101 ------------------------~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L 148 (622)
T 3g06_A 101 ------------------------PGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV 148 (622)
T ss_dssp ------------------------TTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred ------------------------CCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence 466777777776654322 56899999999999875 5543 589999999
Q ss_pred ccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1222 SLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1222 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
++|.+.+ +|. .+++|+.|++++|.+.. +| ..+++|+.|++++|.+.+ +|.. +++|+.|++++|.+..
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~- 215 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS- 215 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-
Confidence 9998875 343 35789999999998665 55 457899999999998864 5543 3799999999999875
Q ss_pred CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCC
Q 037733 1302 LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQN 1381 (1450)
Q Consensus 1302 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 1381 (1450)
+|. .+++|+.|++++|. +..+| ..+++|++|++++|.+. .+|. .+++
T Consensus 216 l~~---~~~~L~~L~Ls~N~--------------L~~lp------------~~l~~L~~L~Ls~N~L~-~lp~---~~~~ 262 (622)
T 3g06_A 216 LPA---LPSGLKELIVSGNR--------------LTSLP------------VLPSELKELMVSGNRLT-SLPM---LPSG 262 (622)
T ss_dssp CCC---CCTTCCEEECCSSC--------------CSCCC------------CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred cCC---CCCCCCEEEccCCc--------------cCcCC------------CCCCcCcEEECCCCCCC-cCCc---cccc
Confidence 443 35899999999993 33344 14579999999999755 5665 6789
Q ss_pred CCeeeccCCCCCCCCCCC-CCccccccccccCChhhHH
Q 037733 1382 LTELIIEDCPKLKYFPEK-GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1382 L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 1418 (1450)
|++|++++|.+. .+|.. ..+++|+.|++++|++++.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 999999999654 66654 6789999999999999765
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=4.3e-20 Score=212.30 Aligned_cols=247 Identities=15% Similarity=0.088 Sum_probs=193.7
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCc-cccCcccc-------CCCCCcEEEEccCCCccchhccc--C
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENL-KNLPSGLH-------NLRQLREIRISLCSKLESIAERL--D 1235 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~--~ 1235 (1450)
++|++|++++|.+ .+|..+.. .|+.|++++|.+. ..+|..+. ++++|++|++++|.+.+.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4678888888888 44444332 2889999999884 34555444 68999999999999998888876 8
Q ss_pred CCCCCCceecccCCCcccccccccCC-----CccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc--Ccccc--
Q 037733 1236 NNTSLEKIDTSDCENLKILPSGLHNL-----HQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA--LPKGL-- 1306 (1450)
Q Consensus 1236 ~~~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l-- 1306 (1450)
.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 899999999999998776 7767666 8999999999999888778899999999999999998765 23334
Q ss_pred cCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCcccc-ccCCCCCCCCee
Q 037733 1307 HNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLS-SSIVDLQNLTEL 1385 (1450)
Q Consensus 1307 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L 1385 (1450)
..+++|++|++++|.. .+ +..++. ..+..+++|++|++++|.+.+..| ..+..+++|++|
T Consensus 198 ~~l~~L~~L~L~~N~l-------~~----~~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGM-------ET----PSGVCS--------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp TSCTTCCEEECTTSCC-------CC----HHHHHH--------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred ccCCCCCEEECCCCcC-------cc----hHHHHH--------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 8999999999999931 11 001110 112345799999999999777664 457778999999
Q ss_pred eccCCCCCCCCCCCCCccccccccccCChhhHHhhhcCCCCCCCcccCcceeecccccccccc
Q 037733 1386 IIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGEKCRKDGGRYRDLLTHIPYVWGFEVSTTEIF 1448 (1450)
Q Consensus 1386 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1448 (1450)
++++|.+. .+|..-. ++|+.|++++|++++. +.+.+++.+..+++++|++-
T Consensus 259 ~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~----------p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 259 NLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN----------PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC----------CCTTTSCEEEEEECTTCTTT
T ss_pred ECCCCccC-hhhhhcc-CCceEEECCCCCCCCC----------hhHhhCCCCCEEeccCCCCC
Confidence 99999654 7776433 8999999999999653 23778899999999999863
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.4e-17 Score=185.11 Aligned_cols=203 Identities=17% Similarity=0.123 Sum_probs=125.3
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
+.+.++++++.+.. +|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45556666555543 33222 2456667777666665555566667777777777776665444455666777777777
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcccc
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDD 1326 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1326 (1450)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----- 168 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ----- 168 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-----
Confidence 776655555556667777777777776665555556666777777777777666544456667777777777662
Q ss_pred ccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCC
Q 037733 1327 LQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLK 1394 (1450)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1394 (1450)
+..+|.. .+..+++|++|++++|.+....+..+..+++|+.|++++|++.-
T Consensus 169 ---------l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 169 ---------LKRVPEG--------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ---------CSCCCTT--------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ---------CcEeChh--------HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 2222221 23345667777777776555444557777777777777776543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=184.55 Aligned_cols=203 Identities=14% Similarity=0.075 Sum_probs=169.2
Q ss_pred CCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEee
Q 037733 1190 TSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIIL 1269 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 1269 (1450)
.+++.++++++.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357899999998874 565443 68999999999998877778999999999999999987666666789999999999
Q ss_pred ccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccC
Q 037733 1270 FRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLG 1349 (1450)
Q Consensus 1270 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1349 (1450)
++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +..+|..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------------l~~~~~~------- 151 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--------------LQSLPKG------- 151 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTT-------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--------------CCccCHh-------
Confidence 9999887666677889999999999999998777789999999999999993 3334432
Q ss_pred CCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC--CCccccccccccCChhhHH
Q 037733 1350 NALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK--GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1350 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ 1418 (1450)
.+..+++|++|++++|.+....+..|..+++|++|++++|++. .++.. ..+++|+.|++++||+.+.
T Consensus 152 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 152 -VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred -HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence 2456789999999999977776777999999999999999655 45442 6678999999999998653
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.2e-17 Score=188.91 Aligned_cols=198 Identities=12% Similarity=-0.001 Sum_probs=125.4
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
+++++++++++.+.. +|..+ .++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 467777777766653 33322 2567777777777776666667777777777777777665332 256677777777
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~---- 159 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN---- 159 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc----
Confidence 777644 455666667777777777777665555556666777777777777666555556667777777777662
Q ss_pred cccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCC
Q 037733 1326 DLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPK 1392 (1450)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1392 (1450)
+..+|.. .+..+++|++|++++|.+. .+|..+..+++|+.|++++|++
T Consensus 160 ----------l~~l~~~--------~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 ----------LTELPAG--------LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ----------CSCCCTT--------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ----------CCccCHH--------HhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 2233332 2334556666666666533 5555566666666666666654
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=9e-18 Score=189.56 Aligned_cols=206 Identities=15% Similarity=0.075 Sum_probs=169.0
Q ss_pred CCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEee
Q 037733 1190 TSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIIL 1269 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 1269 (1450)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 58999999999999877778999999999999999998877778999999999999999988887788999999999999
Q ss_pred ccCCCccccCCCCCCCCCcceEeeccCCCccc-CcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCccccc
Q 037733 1270 FRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA-LPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRL 1348 (1450)
Q Consensus 1270 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1348 (1450)
++|.+.+..+..+..+++|++|++++|.+... +|..+..+++|+.|++++|. +..++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--------------l~~~~~------- 166 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--------------IQSIYC------- 166 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--------------CCEECG-------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--------------CCcCCH-------
Confidence 99999877666788899999999999999874 68899999999999999993 122221
Q ss_pred CCCCCCCcccc----eeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC-CCccccccccccCChhhHH
Q 037733 1349 GNALPLPASLT----SLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1349 ~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 1418 (1450)
..+..+++|+ +|++++|.+....+. .....+|++|++++|.+....+.. ..+++|+.|++++|++.+.
T Consensus 167 -~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 167 -TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp -GGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred -HHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 1122233444 899999986654444 444558999999999754443333 6789999999999999754
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=191.47 Aligned_cols=227 Identities=12% Similarity=0.052 Sum_probs=162.7
Q ss_pred CccEEEecCCCchhh-hhh--hcCCCCCccEEEeecccCccccCccc--cCCCCCcEEEEccCCCccchh----cccCCC
Q 037733 1167 SLKFLEVNSCSKLES-VAE--RLDNNTSLERIRIYFCENLKNLPSGL--HNLRQLREIRISLCSKLESIA----ERLDNN 1237 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~~ 1237 (1450)
.++.|.+.++.+... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666665431 111 11234668889999888888877777 788899999999988876433 334578
Q ss_pred CCCCceecccCCCcccccccccCCCccceEeeccCCCccc--c--CCCCCCCCCcceEeeccCCCcccCcc----cccCC
Q 037733 1238 TSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVS--F--PEGGLPCAKLTRLEISYCKRLQALPK----GLHNL 1309 (1450)
Q Consensus 1238 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l 1309 (1450)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.+.. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 8899999999988777777888899999999999987642 2 2233567889999999998864 232 35778
Q ss_pred CCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccC
Q 037733 1310 TSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIED 1389 (1450)
Q Consensus 1310 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 1389 (1450)
++|++|++++|. +.+ ..|..+.. +..+++|++|++++|.+. .+|..+. ++|++|+|++
T Consensus 224 ~~L~~L~Ls~N~-------l~~------~~p~~~~~------~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 224 VQPHSLDLSHNS-------LRA------TVNPSAPR------CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp CCCSSEECTTSC-------CCC------CCCSCCSS------CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred CCCCEEECCCCC-------CCc------cchhhHHh------ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCC
Confidence 999999999983 222 11333221 223478999999999866 6777664 7999999999
Q ss_pred CCCCCCCCCCCCccccccccccCChhhH
Q 037733 1390 CPKLKYFPEKGLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1390 n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 1417 (1450)
|++ +.+|....+++|+.|++++|+++.
T Consensus 282 N~l-~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 282 NRL-NRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCC-CSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CcC-CCCchhhhCCCccEEECcCCCCCC
Confidence 964 454555677899999999999864
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3.4e-17 Score=183.94 Aligned_cols=185 Identities=13% Similarity=0.008 Sum_probs=136.9
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4666666666665542 25667788888888888887766666778888888888888887766666778888888888
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--- 217 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--- 217 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB---
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc---
Confidence 88877766666677888888888888887765555567778888888888888876666678888888888888831
Q ss_pred cccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCC
Q 037733 1326 DLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQN 1381 (1450)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 1381 (1450)
.+ .+++|+.|+++.|...+.+|..++.++.
T Consensus 218 ----~~----------------------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 ----DC----------------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ----CC----------------------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ----cc----------------------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 11 2356777788877777777777665544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.7e-17 Score=181.08 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=110.1
Q ss_pred CccEEEeecccCccccCccccCCCCCcEEEEccCC-CccchhcccCCCCCCCceeccc-CCCcccccccccCCCccceEe
Q 037733 1191 SLERIRIYFCENLKNLPSGLHNLRQLREIRISLCS-KLESIAERLDNNTSLEKIDTSD-CENLKILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1191 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~ 1268 (1450)
+|++|++++|.+.+..+..+.++++|++|++++|. +....+..+..+++|++|++++ |.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555555444333344455555555555554 3333333444555555555555 444433334455555555555
Q ss_pred eccCCCccccCCCCCCCCCcc---eEeeccC-CCcccCcccccCCCCCc-eEEEeCCCCccccccccCCCCCcccCCCCC
Q 037733 1269 LFRCGNLVSFPEGGLPCAKLT---RLEISYC-KRLQALPKGLHNLTSLQ-ELRIIGDSPLCDDLQLAGCDDGMVSFPPEP 1343 (1450)
Q Consensus 1269 l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 1343 (1450)
+++|.+.+ +|. +..+++|+ .|++++| .+....+..+..+++|+ .|++++|. +..+|..
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--------------l~~i~~~- 174 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--------------FTSVQGY- 174 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--------------CCEECTT-
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--------------CcccCHh-
Confidence 55555543 343 44455555 6666666 55544444566666666 66666662 2223322
Q ss_pred cccccCCCCCCCcccceeeccccC-CCccccccCCCC-CCCCeeeccCCCCCCCCCCCCCccccccccccCCh
Q 037733 1344 QDIRLGNALPLPASLTSLGISRFP-NLERLSSSIVDL-QNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCP 1414 (1450)
Q Consensus 1344 ~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 1414 (1450)
.+.. ++|++|++++|+ +....+..|..+ ++|++|++++|++ +.+|.. .+++|+.|++++|+
T Consensus 175 -------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 175 -------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp -------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT-TCTTCSEEECTTC-
T ss_pred -------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh-HhccCceeeccCcc
Confidence 1223 578888888885 444445567888 8888888888854 455543 67788888888775
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=9.8e-17 Score=181.35 Aligned_cols=180 Identities=18% Similarity=0.067 Sum_probs=142.5
Q ss_pred CCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1165 PPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
|++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 3678888888888877777788888999999999988876433 267889999999998877 4667778888999999
Q ss_pred cccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcc
Q 037733 1245 TSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLC 1324 (1450)
Q Consensus 1245 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 1324 (1450)
+++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++....+..+..+++|+.|++++|.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~--- 183 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS--- 183 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC---
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc---
Confidence 99998877666778889999999999998876656566778899999999998887555667889999999999883
Q ss_pred ccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCc
Q 037733 1325 DDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLE 1370 (1450)
Q Consensus 1325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 1370 (1450)
+..+|.... ..++|+.|++++|+...
T Consensus 184 -----------l~~ip~~~~---------~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 184 -----------LYTIPKGFF---------GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -----------CCCCCTTTT---------TTCCCSEEECCSCCBCC
T ss_pred -----------CCccChhhc---------ccccCCeEEeCCCCccC
Confidence 445555432 33588999999988654
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=5e-17 Score=182.58 Aligned_cols=198 Identities=15% Similarity=0.065 Sum_probs=110.1
Q ss_pred CCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEe
Q 037733 1189 NTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1189 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1268 (1450)
+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4555555555555442 1 2345556666666666655542 2455556666666666655544444455566666666
Q ss_pred eccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCccccc
Q 037733 1269 LFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRL 1348 (1450)
Q Consensus 1269 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1348 (1450)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. +..+|..
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~------ 175 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--------------LQSLPEG------ 175 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTT------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--------------cCccCHH------
Confidence 66666554444445555666666666666555444445566666666666662 1122211
Q ss_pred CCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCCCccccccccccCChhhHH
Q 037733 1349 GNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1349 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|++... +++|+.|++++|.+++.
T Consensus 176 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 176 --VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp --TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGG
T ss_pred --HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCc
Confidence 123445666666666665555555566677777777777754422 33566666666666553
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=189.76 Aligned_cols=200 Identities=16% Similarity=0.110 Sum_probs=133.4
Q ss_pred CCccEEEecCCCchhhhhhhc--CCCCCccEEEeecccCccccC----ccccCCCCCcEEEEccCCCccchhcccCCCCC
Q 037733 1166 PSLKFLEVNSCSKLESVAERL--DNNTSLERIRIYFCENLKNLP----SGLHNLRQLREIRISLCSKLESIAERLDNNTS 1239 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 1239 (1450)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 356777777777666666655 667777777777777765433 23345777777777777777666667777777
Q ss_pred CCceecccCCCccc--cc--ccccCCCccceEeeccCCCccccCC----CCCCCCCcceEeeccCCCcccCcccccCC--
Q 037733 1240 LEKIDTSDCENLKI--LP--SGLHNLHQLREIILFRCGNLVSFPE----GGLPCAKLTRLEISYCKRLQALPKGLHNL-- 1309 (1450)
Q Consensus 1240 L~~L~L~~n~~~~~--~~--~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-- 1309 (1450)
|++|++++|++.+. ++ ..+..+++|++|++++|.+.. ++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777776542 21 223567777777777777642 221 12345677888888887777666666555
Q ss_pred -CCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeecc
Q 037733 1310 -TSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIE 1388 (1450)
Q Consensus 1310 -~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 1388 (1450)
++|++|++++|. +..+|..+ +++|++|++++|.+.+ +|. +..+++|+.|+++
T Consensus 250 ~~~L~~L~Ls~N~--------------l~~lp~~~-----------~~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 250 SSALNSLNLSFAG--------------LEQVPKGL-----------PAKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLD 302 (310)
T ss_dssp CTTCCCEECCSSC--------------CCSCCSCC-----------CSCCSCEECCSCCCCS-CCC-TTSCCCCSCEECS
T ss_pred cCcCCEEECCCCC--------------CCchhhhh-----------cCCCCEEECCCCcCCC-Cch-hhhCCCccEEECc
Confidence 588888888873 33344332 3688888888887554 344 6788999999999
Q ss_pred CCCCC
Q 037733 1389 DCPKL 1393 (1450)
Q Consensus 1389 ~n~~~ 1393 (1450)
+|++.
T Consensus 303 ~N~l~ 307 (310)
T 4glp_A 303 GNPFL 307 (310)
T ss_dssp STTTS
T ss_pred CCCCC
Confidence 99754
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=9.3e-17 Score=176.75 Aligned_cols=201 Identities=15% Similarity=0.057 Sum_probs=154.1
Q ss_pred CCCCccEEEecCCCchhhhhhhcCCCCCccEEEeeccc-CccccCccccCCCCCcEEEEcc-CCCccchhcccCCCCCCC
Q 037733 1164 LPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCE-NLKNLPSGLHNLRQLREIRISL-CSKLESIAERLDNNTSLE 1241 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~ 1241 (1450)
+|++|++|++++|.+.+..+..+..+++|++|++++|. +....+..|.++++|++|++++ |.+....+..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34688899999888887777788889999999999997 6655556788899999999998 888776667788899999
Q ss_pred ceecccCCCcccccccccCCCccc---eEeeccC-CCccccCCCCCCCCCcc-eEeeccCCCcccCcccccCCCCCceEE
Q 037733 1242 KIDTSDCENLKILPSGLHNLHQLR---EIILFRC-GNLVSFPEGGLPCAKLT-RLEISYCKRLQALPKGLHNLTSLQELR 1316 (1450)
Q Consensus 1242 ~L~L~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~ 1316 (1450)
+|++++|.+.+ +|. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|.+.. +|......++|+.|+
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEE
Confidence 99999998665 665 77888888 9999999 66655555677889999 99999998875 444333338899999
Q ss_pred EeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCC-cccceeeccccCCCccccccCCCCCCCCeeeccCCC
Q 037733 1317 IIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLP-ASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCP 1391 (1450)
Q Consensus 1317 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 1391 (1450)
+++|.. +..+|. ..|..+ ++|++|++++|++. .+|.. .+++|+.|++++|.
T Consensus 186 L~~n~~-------------l~~i~~--------~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 186 LNKNKY-------------LTVIDK--------DAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCTT-------------CCEECT--------TTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred cCCCCC-------------cccCCH--------HHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 998820 222332 234455 78999999998855 45543 67899999999885
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=3.9e-18 Score=199.19 Aligned_cols=223 Identities=16% Similarity=0.169 Sum_probs=114.9
Q ss_pred CccEEEeecCCCccccCcccCCC--CcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCC-CccccccCCCCCccE
Q 037733 1039 RLEYLGLSHCEGLVKLPQSSLSL--SSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKS-LPEAWMCDNNSSLEI 1115 (1450)
Q Consensus 1039 ~L~~L~Ls~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~l~~L~~ 1115 (1450)
.++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|.+... ++..+ ..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCE
Confidence 4666777766554 2334444 667777777776665555555667777777777764332 33333 46677777
Q ss_pred EEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCC-Cchhh-hhhhcCCCC-C
Q 037733 1116 LCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSC-SKLES-VAERLDNNT-S 1191 (1450)
Q Consensus 1116 L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~ 1191 (1450)
|++++|.+....+ .+..+++|++|++++|..+....++..+..+ ++|++|++++| .+... ++..+..++ +
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~------~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC------SRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC------TTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC------CCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 7777776553222 2233455555555555444332222222222 45555555555 44432 344444555 5
Q ss_pred ccEEEeeccc--Cc-cccCccccCCCCCcEEEEccCC-CccchhcccCCCCCCCceecccCCCc-ccccccccCCCccce
Q 037733 1192 LERIRIYFCE--NL-KNLPSGLHNLRQLREIRISLCS-KLESIAERLDNNTSLEKIDTSDCENL-KILPSGLHNLHQLRE 1266 (1450)
Q Consensus 1192 L~~L~l~~n~--~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~ 1266 (1450)
|++|++++|. +. +.++..+.++++|++|++++|. +.+..+..+..+++|++|++++|... ......+..+++|++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 5555555552 22 2233444455555555555555 33334444555555555555555311 111113444555555
Q ss_pred EeeccC
Q 037733 1267 IILFRC 1272 (1450)
Q Consensus 1267 L~l~~n 1272 (1450)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 555555
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=8.7e-18 Score=196.23 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecc-cCcc-ccCccccCCCCCcEEEEccC-CCccc-hhcccCCCC-CC
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFC-ENLK-NLPSGLHNLRQLREIRISLC-SKLES-IAERLDNNT-SL 1240 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L 1240 (1450)
++|++|++++|.+.+..+..+..+++|++|++++| .+.+ .++..+.++++|++|++++| .+.+. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 35555555555555445555555555555555555 2332 13334445555555555555 44432 344444555 55
Q ss_pred CceecccCC--Cc-ccccccccCCCccceEeeccCC-CccccCCCCCCCCCcceEeeccCC-CcccCcccccCCCCCceE
Q 037733 1241 EKIDTSDCE--NL-KILPSGLHNLHQLREIILFRCG-NLVSFPEGGLPCAKLTRLEISYCK-RLQALPKGLHNLTSLQEL 1315 (1450)
Q Consensus 1241 ~~L~L~~n~--~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L 1315 (1450)
++|++++|. +. ..++..+..+++|++|++++|. +....+..+..+++|++|++++|. +.......+..+++|+.|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 555555552 22 2333444445555555555555 333333344444555555555553 111111134444555555
Q ss_pred EEeCC
Q 037733 1316 RIIGD 1320 (1450)
Q Consensus 1316 ~l~~n 1320 (1450)
++++|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 55444
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=4.4e-16 Score=172.60 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=142.4
Q ss_pred CCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1164 LPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
+|++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 34688999999999988888889999999999999999998888889999999999999999998777788999999999
Q ss_pred ecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1244 DTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1244 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
+|++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|++.+..+..+..+++|+.|++++|+..
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 99999988766667889999999999999988666667888999999999999999877778999999999999999643
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=3.7e-18 Score=203.14 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=119.2
Q ss_pred CCccEEEecCCCch---hhhhh-------hcCCCCCccEEEeecccCcc----ccCccccCCCCCcEEEEccCCCccchh
Q 037733 1166 PSLKFLEVNSCSKL---ESVAE-------RLDNNTSLERIRIYFCENLK----NLPSGLHNLRQLREIRISLCSKLESIA 1231 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~ 1231 (1450)
++|++|++++|.+. +.+|. .+..+++|++|++++|.+.. .+|..+..+++|++|+|++|.+....+
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 56777777765332 22222 23566777777777777665 345556666777777777777653322
Q ss_pred c----ccCCC---------CCCCceecccCCCc-cccc---ccccCCCccceEeeccCCCcc-----ccCCCCCCCCCcc
Q 037733 1232 E----RLDNN---------TSLEKIDTSDCENL-KILP---SGLHNLHQLREIILFRCGNLV-----SFPEGGLPCAKLT 1289 (1450)
Q Consensus 1232 ~----~~~~~---------~~L~~L~L~~n~~~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~ 1289 (1450)
. .+..+ ++|++|++++|++. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 2 22223 67777777777655 2333 345566677777777776642 2333555566777
Q ss_pred eEeeccCCCc----ccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCC--CCCcccceeec
Q 037733 1290 RLEISYCKRL----QALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNAL--PLPASLTSLGI 1363 (1450)
Q Consensus 1290 ~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l 1363 (1450)
.|+|++|.+. ..+|..+..+++|+.|+|++|. +.+ .+...+| ..+ ..+++|++|+|
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-------i~~--~~~~~l~---------~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-------LSA--RGAAAVV---------DAFSKLENIGLQTLRL 281 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-------CCH--HHHHHHH---------HHHHTCSSCCCCEEEC
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-------Cch--hhHHHHH---------HHHhhccCCCeEEEEC
Confidence 7777777764 3455566667777777777762 110 0000011 111 12456677777
Q ss_pred cccCCCc----cccccC-CCCCCCCeeeccCCCCCCC
Q 037733 1364 SRFPNLE----RLSSSI-VDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1364 ~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~~~~~ 1395 (1450)
++|.+.. .+|..+ .++++|++|++++|++...
T Consensus 282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 7766555 355554 4466777777777654433
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.2e-15 Score=169.09 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=102.5
Q ss_pred ccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeecc
Q 037733 1192 LERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFR 1271 (1450)
Q Consensus 1192 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1271 (1450)
.++++++++.+. .+|..+. ++|+.|++++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344444444443 2333322 3555555555555554444555555566666666555554444555566666666666
Q ss_pred CCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCC
Q 037733 1272 CGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNA 1351 (1450)
Q Consensus 1272 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1351 (1450)
|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|. +..+|. ..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~~~~--------~~ 150 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--------------LQSIPA--------GA 150 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCT--------TT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--------------CCccCH--------HH
Confidence 65554444445555666666666666655444445666666666666662 222222 12
Q ss_pred CCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCC
Q 037733 1352 LPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1352 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1395 (1450)
+..+++|++|+|++|.+....+..+..+++|++|++++|++...
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 33445677777777766655566788889999999999976554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=6.3e-16 Score=176.75 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=153.2
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 5899999999987653 3 57789999999999998876543 88999999999999998763 3 5888999999999
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... +. +..+++|+.|++++|.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~---- 184 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK---- 184 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC----
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc----
Confidence 99987653 3 38899999999999998865433 66788999999999998874 33 8899999999999983
Q ss_pred cccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCC
Q 037733 1326 DLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLK 1394 (1450)
Q Consensus 1326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1394 (1450)
+..++. +..+++|++|++++|.+....+ +..+++|+.|++++|++..
T Consensus 185 ----------l~~~~~----------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ----------ISDISP----------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ----------CCCCGG----------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ----------cCcChh----------hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 112221 3456799999999998665443 8889999999999997533
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.4e-15 Score=175.75 Aligned_cols=224 Identities=18% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccC-ccccCCCCCcE-EEEccCCCccchhcccCCCCCCCc
Q 037733 1165 PPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLP-SGLHNLRQLRE-IRISLCSKLESIAERLDNNTSLEK 1242 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~~n~~~~~~~~~~~~~~~L~~ 1242 (1450)
|+++++|+|++|.+....+..|.++++|++|+|++|.+.+.+| ..|.++++|.+ +.+++|.+....|..+..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 3566677777766665555566777777777777777665554 34566666654 444456666555666677777777
Q ss_pred eecccCCCcccccccccCCCccceEeeccCCCccccCC-CCCCC-CCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1243 IDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPE-GGLPC-AKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1243 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
|++++|.+....+..+....++..|++.++.....++. .+..+ ..++.|++++|.+.. +|......++|+.|++++|
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence 77777766554444455555666677665544444433 23333 356677777777665 3334444556777777654
Q ss_pred CCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCCC
Q 037733 1321 SPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEKG 1400 (1450)
Q Consensus 1321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 1400 (1450)
+ .+..+|.+ +|..+++|++|++++|.+. .+|. ..+.+|+.|.+.+|..++.+|...
T Consensus 188 n-------------~l~~i~~~--------~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 188 N-------------NLEELPND--------VFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp T-------------TCCCCCTT--------TTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCCTT
T ss_pred C-------------cccCCCHH--------HhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCCch
Confidence 1 13344432 2445567777777777633 3443 224456666666666666676666
Q ss_pred CccccccccccCC
Q 037733 1401 LPSSLLRLRLERC 1413 (1450)
Q Consensus 1401 ~~~~L~~L~l~~n 1413 (1450)
.+++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 6667777777643
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.3e-15 Score=174.25 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=144.7
Q ss_pred CCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCcccc
Q 037733 1132 LPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLH 1211 (1450)
Q Consensus 1132 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 1211 (1450)
.+++|++|++++| .+..+ + .+..+ ++|++|++++|.+....+ +..+++|++|++++|.+.+. +.+.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l--~-~~~~l------~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~ 104 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI--E-GVQYL------NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA 104 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC--T-TGGGC------TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred HcCCcCEEEeeCC-CccCc--h-hhhcc------CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc
Confidence 4578899998886 34332 2 23333 689999999998876554 78889999999999987753 3678
Q ss_pred CCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceE
Q 037733 1212 NLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRL 1291 (1450)
Q Consensus 1212 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 1291 (1450)
.+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|+.|
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 178 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEE
Confidence 889999999999988764 3 37888999999999998765433 7888899999999998765433 6778899999
Q ss_pred eeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCC
Q 037733 1292 EISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNL 1369 (1450)
Q Consensus 1292 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 1369 (1450)
++++|.+.+..+ +..+++|+.|++++|. +. .++ .+..+++|++|++++|++.
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~-------l~-------~~~----------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQ-------IS-------DVS----------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSC-------CC-------BCG----------GGTTCTTCCEEEEEEEEEE
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCc-------cC-------ccc----------cccCCCCCCEEEccCCeee
Confidence 999998876433 7888999999999883 11 111 1345678999999998853
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1.5e-17 Score=197.97 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=79.5
Q ss_pred CCccEEEecCCCchh----hhhhhcCCCCCccEEEeecccCccccC----ccccCC---------CCCcEEEEccCCCc-
Q 037733 1166 PSLKFLEVNSCSKLE----SVAERLDNNTSLERIRIYFCENLKNLP----SGLHNL---------RQLREIRISLCSKL- 1227 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l---------~~L~~L~l~~n~~~- 1227 (1450)
++|++|++++|.+.. .++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 456666666665554 344455555666666666665543221 122222 55666666666554
Q ss_pred cchh---cccCCCCCCCceecccCCCcc-----cccccccCCCccceEeeccCCCc----cccCCCCCCCCCcceEeecc
Q 037733 1228 ESIA---ERLDNNTSLEKIDTSDCENLK-----ILPSGLHNLHQLREIILFRCGNL----VSFPEGGLPCAKLTRLEISY 1295 (1450)
Q Consensus 1228 ~~~~---~~~~~~~~L~~L~L~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~ 1295 (1450)
..++ ..+..+++|++|++++|.+.. ..|..+..+++|++|+|++|.+. ..+|..+..+++|++|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 2233 234455566666666665441 22224555556666666666553 33444444555666666666
Q ss_pred CCCccc----Ccccc--cCCCCCceEEEeCC
Q 037733 1296 CKRLQA----LPKGL--HNLTSLQELRIIGD 1320 (1450)
Q Consensus 1296 n~~~~~----~~~~l--~~l~~L~~L~l~~n 1320 (1450)
|.+... ++..+ ..+++|+.|+|++|
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 655443 23333 22556666666655
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=2.8e-17 Score=193.28 Aligned_cols=238 Identities=9% Similarity=-0.016 Sum_probs=170.9
Q ss_pred CCCCccEEEecCCCchhhhh----hhcCCCC-CccEEEeecccCccccCccccCC-----CCCcEEEEccCCCccchhc-
Q 037733 1164 LPPSLKFLEVNSCSKLESVA----ERLDNNT-SLERIRIYFCENLKNLPSGLHNL-----RQLREIRISLCSKLESIAE- 1232 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~- 1232 (1450)
.+++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 44679999999999887655 6777888 99999999999987666555554 8999999999998865554
Q ss_pred ---ccCCC-CCCCceecccCCCccccccc----ccC-CCccceEeeccCCCccc----cCCCCCCCC-CcceEeeccCCC
Q 037733 1233 ---RLDNN-TSLEKIDTSDCENLKILPSG----LHN-LHQLREIILFRCGNLVS----FPEGGLPCA-KLTRLEISYCKR 1298 (1450)
Q Consensus 1233 ---~~~~~-~~L~~L~L~~n~~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~----~~~~~~~l~-~L~~L~l~~n~~ 1298 (1450)
.+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+... ++..+..++ +|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 34444 89999999999977654433 344 36999999999988742 222223344 999999999999
Q ss_pred cccCccc----ccCC-CCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccc-
Q 037733 1299 LQALPKG----LHNL-TSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERL- 1372 (1450)
Q Consensus 1299 ~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~- 1372 (1450)
....+.. +..+ ++|+.|+|++|. +.+ .+...++..+ ...+++|++|+|++|.+....
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-------i~~--~~~~~l~~~l--------~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANL-------LGL--KSYAELAYIF--------SSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSC-------GGG--SCHHHHHHHH--------HHSCTTCCEEECCSSCCCCCCH
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCC-------CCh--hHHHHHHHHH--------hcCCCCceEEECcCCCCCcHHH
Confidence 8765543 4455 599999999993 111 0111122111 112468999999999866533
Q ss_pred ---cccCCCCCCCCeeeccCCCCCCC-------CC-CCCCccccccccccCChhhHH
Q 037733 1373 ---SSSIVDLQNLTELIIEDCPKLKY-------FP-EKGLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1373 ---~~~~~~l~~L~~L~l~~n~~~~~-------~~-~~~~~~~L~~L~l~~n~l~~~ 1418 (1450)
...+..+++|++|++++|.+... ++ ....+++|+.||+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 34568889999999999962211 11 224678899999999998554
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=7e-17 Score=189.85 Aligned_cols=255 Identities=8% Similarity=-0.042 Sum_probs=112.3
Q ss_pred EEeecCCCccccCcccCCCCcccEEEeecCCCccccC-----CCCCCC-CccEEEEccCCCCCCCccccc---cCCCCCc
Q 037733 1043 LGLSHCEGLVKLPQSSLSLSSLRKIEIRNCSSLVSFP-----EVALPS-KLREIRIDGCDALKSLPEAWM---CDNNSSL 1113 (1450)
Q Consensus 1043 L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~-~L~~L~L~~~~~~~~~~~~~~---~~~l~~L 1113 (1450)
+++++|.+.+.+|..+...++|++|++++|.+....+ .+..++ +|++|++++|.+....+..+. ....++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555544444556666666665543321 233344 566666666654433332221 0112556
Q ss_pred cEEEeeccCCcccccC-----CCCC-CCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchh----hhh
Q 037733 1114 EILCVLHCQLLTYIAG-----VQLP-PSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLE----SVA 1183 (1450)
Q Consensus 1114 ~~L~l~~n~~~~~~~~-----~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~~~ 1183 (1450)
++|++++|.+....+. +... ++|++|++++|. +....... +.. ....++.+|++|++++|.+.. .++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~-l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSE-FKQ-AFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH-HHH-HHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHH-HHH-HHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 6666666655432211 1111 344444444432 21111100 000 001112455666666655552 223
Q ss_pred hhcCCCC-CccEEEeecccCccccCc----cccCC-CCCcEEEEccCCCcc----chhcccCC-CCCCCceecccCCCcc
Q 037733 1184 ERLDNNT-SLERIRIYFCENLKNLPS----GLHNL-RQLREIRISLCSKLE----SIAERLDN-NTSLEKIDTSDCENLK 1252 (1450)
Q Consensus 1184 ~~~~~l~-~L~~L~l~~n~~~~~~~~----~l~~l-~~L~~L~l~~n~~~~----~~~~~~~~-~~~L~~L~L~~n~~~~ 1252 (1450)
..+..++ +|++|++++|.+.+..+. .+..+ ++|++|++++|.+.. .++..+.. .++|++|+|++|.+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3333333 566666666655543322 22233 356666666655543 12333333 2355566665555443
Q ss_pred ccc----ccccCCCccceEeeccCCCcc-------ccCCCCCCCCCcceEeeccCCCcc
Q 037733 1253 ILP----SGLHNLHQLREIILFRCGNLV-------SFPEGGLPCAKLTRLEISYCKRLQ 1300 (1450)
Q Consensus 1253 ~~~----~~l~~l~~L~~L~l~~n~~~~-------~~~~~~~~l~~L~~L~l~~n~~~~ 1300 (1450)
..+ ..+..+++|++|++++|.+.. .++..+..+++|+.||+++|++..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 221 223444555555555554211 122333444555555555555443
No 100
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=6.7e-15 Score=177.06 Aligned_cols=313 Identities=12% Similarity=0.030 Sum_probs=185.9
Q ss_pred cceecchhHHHHHHHHH-hcCCCCCCCCcEEEEE--EcCCCCcHHHHHHHHhcccccc---ccCC-cEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLL-LRDDLRNDGGFSVVPI--VGMGGLGKTTLARHVYNDDRVQ---DHFD-LKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~~ 260 (1450)
..++||+++++++.+++ .............+.| +|++|+||||||+++++..... ..|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999999998 4321100012456666 9999999999999999843211 0122 35778776777888
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCC------ChhhHHhhhccccCC---C--CCcE
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS--GKKFLLVLDDVWNE------NYNYWVEFSRPFEAG---A--QGSK 327 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~~~~~~~l~~~---~--~gs~ 327 (1450)
.++..++.+++........+..++...+.+.+. +++++|||||+|.. ....+..+...+... + .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999998865433223345556666666664 67999999999762 123343333333221 2 3445
Q ss_pred EEEecCchHHHHhc--------CC-CCceeCCCCCHHHHHHHHHhcc---CCCCchhHHHHHHHHHHhC------CChHH
Q 037733 328 IIVTTRNHEVAEIM--------GT-VPPHPLKELSDNDCLAIFAQHS---LGPRELLDEIGKKLVSKCG------GLPLA 389 (1450)
Q Consensus 328 ilvTtr~~~v~~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~i~~~~~------G~PLa 389 (1450)
||+||+...+...+ .. ...+.+.+++.++++++|...+ +.......+.+..|++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 88888765532111 11 1238999999999999996543 3322234678889999999 99976
Q ss_pred HHHHHhhh---c---CC--CCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhccCC--CCcccchhH
Q 037733 390 AQTLGGLL---R---GK--HDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLP--KDYEFEEEE 459 (1450)
Q Consensus 390 i~~~~~~L---~---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~ 459 (1450)
+..+.... . .. -+.+.+..+...... ...+.-++..||++.+.++..++.+. .+..+....
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~ 332 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGL 332 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 55554321 1 11 123334333322110 22344567889999999998888653 233455555
Q ss_pred HHHHhhhC--CCccCCCCCCchHHHHHHHHHHHHhcCCCcccC---CCCCcEEEcHHH
Q 037733 460 IILLWCAS--GFLDHKESENPSEDLGRDFFKELYSRSFFQQSS---NNTSRFVMHDLI 512 (1450)
Q Consensus 460 li~~w~a~--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~~mHdlv 512 (1450)
+...+..- .... ...........++++|++.+++.... +..++|++|.+.
T Consensus 333 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 333 LRQRYEDASLTMYN---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHSC---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 54433210 0000 01112344668899999999997643 233456666554
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=1.7e-14 Score=169.36 Aligned_cols=291 Identities=13% Similarity=0.155 Sum_probs=179.7
Q ss_pred CCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc------CH
Q 037733 186 NKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF------DV 259 (1450)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~ 259 (1450)
....|+||+++++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4467999999999999998542 589999999999999999999742 1 6777765432 45
Q ss_pred HHHHHHHHHHhhc-----------------CCCCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCCh-------hhHHh
Q 037733 260 IRLTKAILTSIVA-----------------GQNVDNHDLNKLQVELNKQLSG-KKFLLVLDDVWNENY-------NYWVE 314 (1450)
Q Consensus 260 ~~~~~~i~~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~~ 314 (1450)
..+.+.+...+.. .......+..++...+.+..+. ++++||+||++.... ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666555432 0000123556666666655543 389999999976321 22232
Q ss_pred hhccccCCCCCcEEEEecCchHHHHhc-----------CC-CCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHH
Q 037733 315 FSRPFEAGAQGSKIIVTTRNHEVAEIM-----------GT-VPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVS 381 (1450)
Q Consensus 315 ~~~~l~~~~~gs~ilvTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~ 381 (1450)
+..... ...+.++|+|++...+...+ +. ...+++.+|+.+|+.+++....... .....+.+.+|++
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 233 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 322222 22478899998876542211 11 1368999999999999997643111 1123567889999
Q ss_pred HhCCChHHHHHHHhhhcCCCCHHHHH-HHHhcccccCCccccChhhHHHHhhcCC---ChhHHHHHhHhccCCCCcccch
Q 037733 382 KCGGLPLAAQTLGGLLRGKHDRRVWE-GVLSSKIWELPEERCGIIPALAVSYYYL---PPTLRQCFAYCSLLPKDYEFEE 457 (1450)
Q Consensus 382 ~~~G~PLai~~~~~~L~~~~~~~~w~-~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~s~fp~~~~i~~ 457 (1450)
.|+|+|+++..++..+....+...+. ...+. +...+.-.+..+ ++..+..+..+|. + .++.
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~ 298 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRW 298 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSH
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCH
Confidence 99999999999987643211222111 11110 111111112222 7888999999987 2 2344
Q ss_pred hHHHHHhhhCCCccCCCCCCchHHHHHHHHHHHHhcCCCcccCCCCCcEEE-cHHHHHHHH
Q 037733 458 EEIILLWCASGFLDHKESENPSEDLGRDFFKELYSRSFFQQSSNNTSRFVM-HDLINDLAK 517 (1450)
Q Consensus 458 ~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~m-Hdlv~~~~~ 517 (1450)
..+.....+.. + .........+++.|++++++...+ ..|.+ |++++++.+
T Consensus 299 ~~l~~~~~~~~------~-~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVKG------T-KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTT------C-CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHh------C-CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 55544432211 0 112345678999999999998652 34655 788887754
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=6.4e-15 Score=158.04 Aligned_cols=164 Identities=12% Similarity=-0.037 Sum_probs=123.3
Q ss_pred CCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEe
Q 037733 1189 NTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1189 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1268 (1450)
.++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45777778877777765555677788888888888877765555667788888888888877665555677888888888
Q ss_pred eccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCccccc
Q 037733 1269 LFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRL 1348 (1450)
Q Consensus 1269 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1348 (1450)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+ +.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-------~~------------------ 161 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-------WD------------------ 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-------BC------------------
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-------ee------------------
Confidence 88888776555556778888888888888887666667888888888888883 11
Q ss_pred CCCCCCCcccceeeccccCCCccccccCCCCCC
Q 037733 1349 GNALPLPASLTSLGISRFPNLERLSSSIVDLQN 1381 (1450)
Q Consensus 1349 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 1381 (1450)
..+++|+.|+++.|.+.+.+|..++.++.
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 13467888888888888888887776654
No 103
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.57 E-value=3.3e-15 Score=138.80 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccCChHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 037733 12 SVELLVNKLASEGIRLFARQQQIQADLMKWKKMLVMIKAVLDDAEEK--KTADQSVKLWLGELQNLAYDVEDLMDEFQTE 89 (1450)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~ 89 (1450)
+++.+++||.+.+.+++....||++++++|+++|++|++||.+|+.+ +.++++++.|+++|||+|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888999999999999999999999999999999987 5689999999999999999999999999998
Q ss_pred H
Q 037733 90 A 90 (1450)
Q Consensus 90 ~ 90 (1450)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=4.1e-14 Score=165.19 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=129.2
Q ss_pred cEEEEccCCCCCCCccccccCCCCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCC
Q 037733 1088 REIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPP 1166 (1450)
Q Consensus 1088 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~ 1166 (1450)
++++.++++ ++.+|..+ .+++++|+|++|++....+ .+..+++
T Consensus 12 ~~v~C~~~~-Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~------------------------------- 55 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGD------------------------------- 55 (350)
T ss_dssp TEEEEESTT-CCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTT-------------------------------
T ss_pred CEEEecCCC-CCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCC-------------------------------
Confidence 455666655 44556543 3567778888777765443 2334444
Q ss_pred CccEEEecCCCchhhhh-hhcCCCCCccE-EEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1167 SLKFLEVNSCSKLESVA-ERLDNNTSLER-IRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
|++|+|++|.+.+.++ ..|.++++|.+ +.+++|++....|..|..+++|++|++++|.+....+..+....++..|+
T Consensus 56 -L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 134 (350)
T 4ay9_X 56 -LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134 (350)
T ss_dssp -CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE
T ss_pred -CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhh
Confidence 4555555555444332 34555555554 33444555554455566666666666666666554444444445556666
Q ss_pred cccCCCccccc-ccccCCC-ccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCc-ccccCCCCCceEEEeCCC
Q 037733 1245 TSDCENLKILP-SGLHNLH-QLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALP-KGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1245 L~~n~~~~~~~-~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~ 1321 (1450)
+.++..+..++ ..+..+. .++.|++++|.+. .++.......+|+.|++++|+..+.+| ..|..+++|+.|++++|.
T Consensus 135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred hccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 65544343333 2344433 4666666666654 334444444566666666544444444 345666666677766662
Q ss_pred CccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccC
Q 037733 1322 PLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIED 1389 (1450)
Q Consensus 1322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 1389 (1450)
+.++|.. .+.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 214 --------------l~~lp~~-----------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 214 --------------IHSLPSY-----------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp --------------CCCCCSS-----------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred --------------cCccChh-----------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 3344432 234555666656655666663 66666777776654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.5e-14 Score=176.96 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=116.1
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
+++.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666554 44333 356777777777766 444 345677777777777665 454 433 77777777
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcccc
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDD 1326 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1326 (1450)
+|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.+ +|. +. ++|+.|+|++|.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~----- 191 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL----- 191 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC-----
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC-----
Confidence 777555 444 56777777777777654 454 34677777777777666 555 44 777777777773
Q ss_pred ccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCC
Q 037733 1327 LQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFP 1397 (1450)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1397 (1450)
+..+|. +.. ..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|++...+|
T Consensus 192 ---------L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 192 ---------LESLPA-VPV----RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---------CSSCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ---------CCchhh-HHH----hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 233333 111 11122234488888888644 567777778888888888887665544
No 106
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=1.4e-13 Score=162.19 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=173.0
Q ss_pred CCcceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc-----cCHH
Q 037733 186 NKTEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD-----FDVI 260 (1450)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 260 (1450)
....||||+++++.+.+ +.. +++.|+|++|+|||||++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34569999999999999 722 48999999999999999999974 222 2578887642 2344
Q ss_pred HHHHHHHHHhhc-------------C-------C-CC-------CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh---
Q 037733 261 RLTKAILTSIVA-------------G-------Q-NV-------DNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY--- 309 (1450)
Q Consensus 261 ~~~~~i~~~l~~-------------~-------~-~~-------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--- 309 (1450)
.+...+...+.. . . .. .......+...+.+.-+ ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444433311 0 0 00 12345555555555433 599999999965321
Q ss_pred hhHHhhhccccCCCCCcEEEEecCchHHHHhc-----------CC-CCceeCCCCCHHHHHHHHHhccC--C-CCchhHH
Q 037733 310 NYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIM-----------GT-VPPHPLKELSDNDCLAIFAQHSL--G-PRELLDE 374 (1450)
Q Consensus 310 ~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~--~-~~~~~~~ 374 (1450)
..|......+.....+.++|+|+|.......+ +. ...+++.+|+.+|+.+++..... + ..+.
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~--- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---
Confidence 12222222222222467899999986542211 11 24689999999999999986431 1 1111
Q ss_pred HHHHHHHHhCCChHHHHHHHhhhcCCCCHHHHHHH-HhcccccCCccccChhhHHH-Hhhc--CCChhHHHHHhHhccCC
Q 037733 375 IGKKLVSKCGGLPLAAQTLGGLLRGKHDRRVWEGV-LSSKIWELPEERCGIIPALA-VSYY--YLPPTLRQCFAYCSLLP 450 (1450)
Q Consensus 375 ~~~~i~~~~~G~PLai~~~~~~L~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~s~fp 450 (1450)
. .+|++.|+|+|+++..++..+........|... .+.. ...+...+. +.++ .+|+..+..+..+|.
T Consensus 232 ~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-- 301 (357)
T 2fna_A 232 Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK-- 301 (357)
T ss_dssp H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--
T ss_pred H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc--
Confidence 1 889999999999999998876533233333211 1100 000111122 2221 688899999999998
Q ss_pred CCcccchhHHHHHhh-hCCCccCCCCCCchHHHHHHHHHHHHhcCCCcccCCCCCcEE-EcHHHHHHH
Q 037733 451 KDYEFEEEEIILLWC-ASGFLDHKESENPSEDLGRDFFKELYSRSFFQQSSNNTSRFV-MHDLINDLA 516 (1450)
Q Consensus 451 ~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-mHdlv~~~~ 516 (1450)
+. +...+..... ..|. .........+++.|+++++|...+ ..|+ -|++++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred -CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 21 4444432210 1120 012344678999999999998643 3466 478888763
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=6.6e-14 Score=171.31 Aligned_cols=179 Identities=21% Similarity=0.217 Sum_probs=144.4
Q ss_pred CCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEee
Q 037733 1190 TSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIIL 1269 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 1269 (1450)
.+|+.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|+.|++++|.+.+ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 489999999999886 66655 478999999999988 466 457899999999999776 666 554 9999999
Q ss_pred ccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccC
Q 037733 1270 FRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLG 1349 (1450)
Q Consensus 1270 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1349 (1450)
++|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|. +..+|. +
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~--------------L~~lp~-l------ 178 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ--------------LTFLPE-L------ 178 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC--------------CSCCCC-C------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC--------------CCCcch-h------
Confidence 9999876 666 56899999999999887 665 67899999999993 333443 1
Q ss_pred CCCCCCcccceeeccccCCCccccccCCCCCCC-------CeeeccCCCCCCCCCCC-CCccccccccccCChhhHH
Q 037733 1350 NALPLPASLTSLGISRFPNLERLSSSIVDLQNL-------TELIIEDCPKLKYFPEK-GLPSSLLRLRLERCPLIGE 1418 (1450)
Q Consensus 1350 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 1418 (1450)
. ++|++|+|++|.+. .+|. +.. +| +.|+|++|.+ +.+|.. ..+++|+.|++++|++++.
T Consensus 179 ---~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 179 ---P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ---C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred ---h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 1 79999999999855 6776 554 77 9999999964 567764 5689999999999999765
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=5.6e-14 Score=151.51 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=109.4
Q ss_pred cEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccC
Q 037733 1169 KFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDC 1248 (1450)
Q Consensus 1169 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 1248 (1450)
+.++++++.+.. +|..+ .++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555544332 23222 256777777777777666667777778888888888777766777777888888888888
Q ss_pred CCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1249 ENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1249 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 766555555677888888888888877776777777888888888888887766667888888888888888644
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=151.26 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=119.6
Q ss_pred cEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccC-ccccCCCCCcEEEEccCCCccchhcccCCCCCCCceeccc
Q 037733 1169 KFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLP-SGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSD 1247 (1450)
Q Consensus 1169 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 1247 (1450)
+.+++++|.+.. +|..+ .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777766554 33332 3456788888888876644 4577888888888888888877777788888888888888
Q ss_pred CCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1248 CENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1248 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8887777777888888889999888888777778888888999999998888877888888899999999988543
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=8.4e-14 Score=147.56 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=118.4
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+.. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 477888888877763 33 46778888899998885542 246778889999999998888777778888889999999
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|++.. ++ .+..+++|+.|++++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9998877777788888999999999988445555 56778899999999998876 33 68888999999999883
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=4.7e-14 Score=165.33 Aligned_cols=162 Identities=16% Similarity=0.057 Sum_probs=138.2
Q ss_pred CCCCccEEEecCCCchhhhhhhcC-CCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCc
Q 037733 1164 LPPSLKFLEVNSCSKLESVAERLD-NNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEK 1242 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 1242 (1450)
+|+.++.|+|++|.+.+..+..+. .+++|++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 346788999999988887777777 8999999999999999877788999999999999999998877778899999999
Q ss_pred eecccCCCcccccccccCCCccceEeeccCCCccccCCCC---CCCCCcceEeeccCCCcccCcccccCCCC--CceEEE
Q 037733 1243 IDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGG---LPCAKLTRLEISYCKRLQALPKGLHNLTS--LQELRI 1317 (1450)
Q Consensus 1243 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l 1317 (1450)
|+|++|.+....|..|..+++|++|+|++|.+....+..+ ..+++|+.|+|++|++....+..+..+++ |+.|+|
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 9999999888878899999999999999998875333333 45899999999999998866667888887 489999
Q ss_pred eCCCCccc
Q 037733 1318 IGDSPLCD 1325 (1450)
Q Consensus 1318 ~~n~~~~~ 1325 (1450)
++|+..|+
T Consensus 197 ~~N~~~C~ 204 (361)
T 2xot_A 197 HNNPLECD 204 (361)
T ss_dssp CSSCEECC
T ss_pred cCCCccCC
Confidence 99987654
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.1e-13 Score=146.21 Aligned_cols=175 Identities=14% Similarity=0.041 Sum_probs=124.6
Q ss_pred cEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccC
Q 037733 1193 ERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRC 1272 (1450)
Q Consensus 1193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1272 (1450)
+.++.+++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 345555555543 34333 458899999999888766666788889999999998877665566788888999999888
Q ss_pred CCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCC
Q 037733 1273 GNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNAL 1352 (1450)
Q Consensus 1273 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1450)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. +..+|.. .+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--------------l~~~~~~--------~~ 144 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--------------LKSVPDG--------VF 144 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------CSCCCTT--------TT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--------------cceeCHH--------Hh
Confidence 8876555556778888888888888887666667888888888888883 2223321 23
Q ss_pred CCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC
Q 037733 1353 PLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK 1399 (1450)
Q Consensus 1353 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 1399 (1450)
..+++|++|++++|+.. ..+++|+.|+++.|.+...+|..
T Consensus 145 ~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeecc
Confidence 45567788888877533 34567777777777777677653
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=7.5e-14 Score=157.88 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=138.6
Q ss_pred CCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceE
Q 037733 1188 NNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREI 1267 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 1267 (1450)
.+++|+.|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 568899999999988754 348889999999999999887554 8899999999999998665 33 48899999999
Q ss_pred eeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccc
Q 037733 1268 ILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIR 1347 (1450)
Q Consensus 1268 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1450)
++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|. +. .++.
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~-------l~-------~~~~------ 173 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ-------IS-------DIVP------ 173 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-------CC-------CCGG------
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc-------cc-------cchh------
Confidence 9999988653 3566789999999999998874 568899999999999993 11 1211
Q ss_pred cCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCC
Q 037733 1348 LGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLK 1394 (1450)
Q Consensus 1348 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1394 (1450)
+..+++|++|++++|.+.. ++. +..+++|+.|++++|+...
T Consensus 174 ----l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 ----LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ----hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 3466899999999997554 554 8899999999999996544
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.2e-13 Score=156.29 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=71.9
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
+|++|++++|.+... + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++ .+..+++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 445555555544332 1 24445555555555555544322 5555555555555555543 22 24555555555555
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
+|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 5554332 2345555555555555555432 234445555555555555554332 555555556665555
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.7e-13 Score=148.93 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=86.9
Q ss_pred CCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEee
Q 037733 1190 TSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIIL 1269 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 1269 (1450)
++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56666666666666655666666666666666666665544445566667777777777665554555666777777777
Q ss_pred ccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1270 FRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1270 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777665 55666666677777777777766655555667777777777777533
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.7e-13 Score=145.27 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=70.0
Q ss_pred cCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcce
Q 037733 1211 HNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTR 1290 (1450)
Q Consensus 1211 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 1290 (1450)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666655 233 3555666666666666432 22 35666777777777777776666666777777888
Q ss_pred EeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1291 LEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1291 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
|++++|.+.+..|..+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 888888777666666777777777777776
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=2.4e-13 Score=146.54 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=124.2
Q ss_pred CCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1164 LPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
+|++++.|++++|.+....+..+..+++|++|++++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|++|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 34689999999999888777789999999999999999998888999999999999999999997666678899999999
Q ss_pred ecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1244 DTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1244 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.-.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9999998888888999999999999999999877777788899999999999997653
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=3.9e-13 Score=144.87 Aligned_cols=138 Identities=12% Similarity=-0.016 Sum_probs=121.9
Q ss_pred CCCccEEEecCCCchhhhh-hhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1165 PPSLKFLEVNSCSKLESVA-ERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
|+.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3567888888888877644 457889999999999999988777789999999999999999998888889999999999
Q ss_pred ecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccC
Q 037733 1244 DTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQAL 1302 (1450)
Q Consensus 1244 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1302 (1450)
+|++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++....
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999988888889999999999999999998888888999999999999999987653
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=7.6e-14 Score=173.07 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=148.9
Q ss_pred ccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceeccc
Q 037733 1168 LKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSD 1247 (1450)
Q Consensus 1168 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 1247 (1450)
+..+.+..+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445555555544332 3457889999999999875 33 58899999999999999887654 78899999999999
Q ss_pred CCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccc
Q 037733 1248 CENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDL 1327 (1450)
Q Consensus 1248 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 1327 (1450)
|.+.. +| .+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~------ 164 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ------ 164 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC------
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc------
Confidence 98765 33 688999999999999988753 3477789999999999998875 568999999999999993
Q ss_pred cccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCC
Q 037733 1328 QLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKY 1395 (1450)
Q Consensus 1328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1395 (1450)
+.+ +++ +..+++|++|+|++|.+.. ++ .+..+++|+.|+|++|++...
T Consensus 165 -l~~-------~~~----------l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 165 -ISD-------IVP----------LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -CCC-------CGG----------GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred -CCC-------chh----------hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 221 111 3466899999999998655 44 588999999999999976543
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=3e-13 Score=158.55 Aligned_cols=149 Identities=14% Similarity=0.048 Sum_probs=109.9
Q ss_pred cEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCcccc-CCCCCcEEEEccCCCccchhcccCCCCCCCceeccc
Q 037733 1169 KFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLH-NLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSD 1247 (1450)
Q Consensus 1169 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 1247 (1450)
+.++++++.+.. +|..+ .+.++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..+..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 577777776554 34333 34678888888888776666666 788888888888888877667778888888888888
Q ss_pred CCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccc---cCCCCCceEEEeCC
Q 037733 1248 CENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGL---HNLTSLQELRIIGD 1320 (1450)
Q Consensus 1248 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n 1320 (1450)
|.+....+..|..+++|++|+|++|.+....+..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 88766666677788888888888888877667777778888888888888776443334 56777888888777
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=2.8e-13 Score=168.02 Aligned_cols=169 Identities=18% Similarity=0.164 Sum_probs=121.2
Q ss_pred CCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccc
Q 037733 1131 QLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGL 1210 (1450)
Q Consensus 1131 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 1210 (1450)
..+++|+.|++++|. +..+. .+..+ ++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ + +.+
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~---~l~~l------~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l 105 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQ---GIQYL------PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSL 105 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCT---TGGGC------TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTS
T ss_pred hcCCCCCEEECcCCC-CCCCh---HHccC------CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhh
Confidence 345678888887753 33221 22333 688888888887776554 6778888888888887765 3 357
Q ss_pred cCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcce
Q 037733 1211 HNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTR 1290 (1450)
Q Consensus 1211 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 1290 (1450)
..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 7788888888888887753 3467788888888888876654 467778888888888887766555 667788888
Q ss_pred EeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1291 LEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1291 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
|+|++|++... | .+..+++|+.|+|++|+
T Consensus 180 L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKNHISDL-R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEECCSEE
T ss_pred EECcCCCCCCC-h-HHccCCCCCEEEccCCc
Confidence 88888887763 3 57778888888888873
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=9.7e-13 Score=142.90 Aligned_cols=138 Identities=12% Similarity=-0.016 Sum_probs=122.1
Q ss_pred CCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1164 LPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1164 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
+|++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+|++|.+.+..+..+..+++|++|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 34789999999999998888889999999999999999976666778999999999999999998777778899999999
Q ss_pred ecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccC
Q 037733 1244 DTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQAL 1302 (1450)
Q Consensus 1244 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1302 (1450)
++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++....
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999966 67888899999999999999988666666788999999999999987643
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=6.8e-12 Score=149.04 Aligned_cols=291 Identities=12% Similarity=0.006 Sum_probs=179.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc----cc--CCcEEEEEeCCcc-CHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ----DH--FDLKTWTCVSDDF-DVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~~ 260 (1450)
..++||+++++++.+++.... .....+.+.|+|++|+||||+|+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 569999999999998886521 12234689999999999999999999842111 01 2356788877666 788
Q ss_pred HHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhh-hccccCCCCCcEEEEecCchH--
Q 037733 261 RLTKAILTSIVAGQN-VDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEF-SRPFEAGAQGSKIIVTTRNHE-- 336 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~-~~~l~~~~~gs~ilvTtr~~~-- 336 (1450)
.++..++.++.+... ....+.......+...++.++.+|||||++......+... ...+.....+..||+||+...
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 888888888843322 1223345666777777877777999999965321111111 111111116788999998652
Q ss_pred ------HHHhcCCCCceeCCCCCHHHHHHHHHhcc---CCCCchhHHHHHHHHHHhC---CChH-HHHHHHhh--hcC--
Q 037733 337 ------VAEIMGTVPPHPLKELSDNDCLAIFAQHS---LGPRELLDEIGKKLVSKCG---GLPL-AAQTLGGL--LRG-- 399 (1450)
Q Consensus 337 ------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~i~~~~~---G~PL-ai~~~~~~--L~~-- 399 (1450)
+...++ ..+.+++++.++..+++...+ +......++..+.|++.++ |.|. |+..+... +..
T Consensus 178 ~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 178 DYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 222222 389999999999999998863 3222333566778888888 9887 44443322 221
Q ss_pred -CCCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhccCCCCcccchhHHHHHhhhCCCccCCCCCCc
Q 037733 400 -KHDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKESENP 478 (1450)
Q Consensus 400 -~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 478 (1450)
.-..+.+..++.... ...+.-++..|+++.|..+..++....+..+. +.....--..| + ...
T Consensus 256 ~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~-----~~~ 318 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q-----KPL 318 (384)
T ss_dssp SCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C-----CCC
T ss_pred CccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C-----CCC
Confidence 123566666554321 13466778899988888877777621101111 11111111222 1 112
Q ss_pred hHHHHHHHHHHHHhcCCCccc
Q 037733 479 SEDLGRDFFKELYSRSFFQQS 499 (1450)
Q Consensus 479 ~~~~~~~~~~~L~~~~l~~~~ 499 (1450)
.......+++.|..++++...
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 345567889999999999863
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=9.7e-12 Score=148.11 Aligned_cols=292 Identities=15% Similarity=0.063 Sum_probs=180.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---c-CCcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD---H-FDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~ 263 (1450)
..++||+++++++..++...- .....+.+.|+|++|+||||+|+.+++...... . -...+|+++....+...+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 569999999999999985431 123456789999999999999999998421110 0 1246778888888888999
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCChh--hHHhh---hccccCC--CCCcEEEEecCc
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQL--SGKKFLLVLDDVWNENYN--YWVEF---SRPFEAG--AQGSKIIVTTRN 334 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~~---~~~l~~~--~~gs~ilvTtr~ 334 (1450)
..++.+++........+..+....+...+ .+++.+||||+++..... ..+.+ ....... ..+..+|+||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999886544333444666666666666 456889999999653211 11222 2222111 346678888876
Q ss_pred hH--------HHHhcCCCCceeCCCCCHHHHHHHHHhcc---CCCCchhHHHHHHHHHHhC---CChH-HHHHHHhhhc-
Q 037733 335 HE--------VAEIMGTVPPHPLKELSDNDCLAIFAQHS---LGPRELLDEIGKKLVSKCG---GLPL-AAQTLGGLLR- 398 (1450)
Q Consensus 335 ~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~i~~~~~---G~PL-ai~~~~~~L~- 398 (1450)
.. +...+. ...+.+.+++.++..+++...+ +......++..+.|++.++ |.|- |+.++.....
T Consensus 177 ~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp STTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 52 222221 1468999999999999998764 2222233456778888888 9994 3333322221
Q ss_pred ----CC--CCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhc-cCCCCcccchhHHHHHh----hhC
Q 037733 399 ----GK--HDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCS-LLPKDYEFEEEEIILLW----CAS 467 (1450)
Q Consensus 399 ----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w----~a~ 467 (1450)
+. -..+.++.++.... ...+.-++..|+++.+..+..++ ++.....+....+.+.. -..
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 11 13455555554321 22456678899998888776666 44322344444333322 112
Q ss_pred CCccCCCCCCchHHHHHHHHHHHHhcCCCcc
Q 037733 468 GFLDHKESENPSEDLGRDFFKELYSRSFFQQ 498 (1450)
Q Consensus 468 g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 498 (1450)
| + .......+..++++|...|++..
T Consensus 326 ~-~-----~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 326 G-L-----EHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp T-C-----CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred C-C-----CCCCHHHHHHHHHHHHhCCCeEE
Confidence 2 1 11234567789999999999986
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=8.9e-14 Score=177.44 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=86.2
Q ss_pred hhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccC
Q 037733 1181 SVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHN 1260 (1450)
Q Consensus 1181 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 1260 (1450)
..+..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34455666677777777777765 45555556777777777777766 56666677777777777777755 55667777
Q ss_pred CCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCC-CceEEEeCC
Q 037733 1261 LHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTS-LQELRIIGD 1320 (1450)
Q Consensus 1261 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n 1320 (1450)
+++|++|+|++|.+. .+|..+..+++|+.|+|++|++.+.+|..+..+.. +..|++++|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 777777777777664 56666777777777777777777666655543321 123556665
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=4.3e-11 Score=142.49 Aligned_cols=294 Identities=12% Similarity=0.027 Sum_probs=184.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC-CcEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF-DLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 266 (1450)
..++||+++++++.+++........+..+.+.|+|++|+||||+|+.+++. ..... ..++|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 569999999999999986521101122348999999999999999999974 32221 246778877777888899999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCChhhHHhhhccccCCC----CCcEEEEecCchHHHHh
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQL--SGKKFLLVLDDVWNENYNYWVEFSRPFEAGA----QGSKIIVTTRNHEVAEI 340 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~----~gs~ilvTtr~~~v~~~ 340 (1450)
+..++........+..++...+...+ .+++.+||||+++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 88886543322334555566655555 3668999999997765555555554443211 46678888876644322
Q ss_pred cC-------CCCceeCCCCCHHHHHHHHHhccC---CCCchhHHHHHHHHHHh---------CCChHHHHHHHhhhc---
Q 037733 341 MG-------TVPPHPLKELSDNDCLAIFAQHSL---GPRELLDEIGKKLVSKC---------GGLPLAAQTLGGLLR--- 398 (1450)
Q Consensus 341 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~i~~~~---------~G~PLai~~~~~~L~--- 398 (1450)
+. ....+.+.+++.++..+++...+. ......++....|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 21 123699999999999999977642 22233467888899999 798755444332211
Q ss_pred ---CC--CCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhccCC---CCcccchhHHHHHhhh----
Q 037733 399 ---GK--HDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLP---KDYEFEEEEIILLWCA---- 466 (1450)
Q Consensus 399 ---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a---- 466 (1450)
+. -..+....+..... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 11 11222222222211 11223446778888888887777554 2214555555554432
Q ss_pred CCCccCCCCCCchHHHHHHHHHHHHhcCCCccc
Q 037733 467 SGFLDHKESENPSEDLGRDFFKELYSRSFFQQS 499 (1450)
Q Consensus 467 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 499 (1450)
.|.. .........++++|..++++...
T Consensus 325 ~~~~------~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 325 YGER------PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TTCC------CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCCC------CCCHHHHHHHHHHHHhCCCeEEe
Confidence 2211 11234567899999999999874
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2e-12 Score=133.00 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=85.2
Q ss_pred CCCccEEEeecccCc-cccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceE
Q 037733 1189 NTSLERIRIYFCENL-KNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREI 1267 (1450)
Q Consensus 1189 l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 1267 (1450)
+++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456666666666665 45555566667777777777766544 456666777777777777665566556667777777
Q ss_pred eeccCCCcccc-CCCCCCCCCcceEeeccCCCcccCc---ccccCCCCCceEEEeCC
Q 037733 1268 ILFRCGNLVSF-PEGGLPCAKLTRLEISYCKRLQALP---KGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1268 ~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n 1320 (1450)
++++|.+.+.. +..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 77777665421 1455666777777777777766433 36777778888877777
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=1.6e-12 Score=133.72 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=109.0
Q ss_pred CCCCCccEEEecCCCch-hhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCC
Q 037733 1163 NLPPSLKFLEVNSCSKL-ESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLE 1241 (1450)
Q Consensus 1163 ~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 1241 (1450)
..|++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34578888888888877 56677778889999999999987765 6788899999999999998877777777788999
Q ss_pred ceecccCCCcccc-cccccCCCccceEeeccCCCccccC---CCCCCCCCcceEeeccCCCcc
Q 037733 1242 KIDTSDCENLKIL-PSGLHNLHQLREIILFRCGNLVSFP---EGGLPCAKLTRLEISYCKRLQ 1300 (1450)
Q Consensus 1242 ~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~ 1300 (1450)
.|++++|.+.+.. +..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999866532 2678889999999999998765433 256778899999999998765
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=1.5e-12 Score=144.63 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=78.7
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
++..+++++|.+.... .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555556665554332 24455666666666666553 33 45666666666666666655433 5666666666666
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
+|.+.+ +|. +.. ++|++|++++|.+.+. + .+..+++|+.|++++|++.+. + .+..+++|+.|++++|
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 666443 222 222 5666666666655432 2 344556666666666665542 2 4555666666666655
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=6.1e-15 Score=181.95 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=84.3
Q ss_pred CccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeec
Q 037733 1191 SLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILF 1270 (1450)
Q Consensus 1191 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1270 (1450)
.|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.+ +| .+..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 36777777776665 454 677777777777777766 566677777777777777777655 55 67777777777777
Q ss_pred cCCCcccc-CCCCCCCCCcceEeeccCCCcccCcc---cccCCCCCceEEE
Q 037733 1271 RCGNLVSF-PEGGLPCAKLTRLEISYCKRLQALPK---GLHNLTSLQELRI 1317 (1450)
Q Consensus 1271 ~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l 1317 (1450)
+|.+.+.. |..+..+++|+.|+|++|++.+..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77776654 66677777777777777777665332 2344777777753
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=5.5e-14 Score=173.42 Aligned_cols=199 Identities=15% Similarity=0.069 Sum_probs=118.9
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeeccc-------------CccccCccccCCCCCcEEE-EccCCCccchh
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCE-------------NLKNLPSGLHNLRQLREIR-ISLCSKLESIA 1231 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~~~~~~~ 1231 (1450)
++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.+
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~----- 422 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL----- 422 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-----
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-----
Confidence 67888888888764 667777788888888886654 2222333333444444443 222211
Q ss_pred cccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCC
Q 037733 1232 ERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTS 1311 (1450)
Q Consensus 1232 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 1311 (1450)
.+|+.+.+++|.+.. +| ...|+.|++++|.+.+ +|. +..+++|+.|+|++|.+. .+|..+..+++
T Consensus 423 ------~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 423 ------DDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp ------HHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred ------chhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 112222233332211 11 1247777777776654 554 666777777777777776 46777777777
Q ss_pred CceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccc-cccCCCCCCCCeeeccCC
Q 037733 1312 LQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERL-SSSIVDLQNLTELIIEDC 1390 (1450)
Q Consensus 1312 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n 1390 (1450)
|+.|+|++|. +..+| .+..+++|++|+|++|.+.+.. |..+..+++|+.|+|++|
T Consensus 488 L~~L~Ls~N~--------------l~~lp----------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 488 LEVLQASDNA--------------LENVD----------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCEEECCSSC--------------CCCCG----------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCEEECCCCC--------------CCCCc----------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 7777777772 22222 1234567777777777765554 777788888888888888
Q ss_pred CCCCCCCCC----CCcccccccc
Q 037733 1391 PKLKYFPEK----GLPSSLLRLR 1409 (1450)
Q Consensus 1391 ~~~~~~~~~----~~~~~L~~L~ 1409 (1450)
++...+|.. ..+++|+.|+
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCccHHHHHHHHCcccCccC
Confidence 655554433 1246666664
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=1.4e-12 Score=131.17 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=80.2
Q ss_pred CCccEEEeecccCc-cccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEe
Q 037733 1190 TSLERIRIYFCENL-KNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREII 1268 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 1268 (1450)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666655 45555556666666666666666544 4556666677777777666555565555666777777
Q ss_pred eccCCCccc-cCCCCCCCCCcceEeeccCCCcccCc---ccccCCCCCceEEEe
Q 037733 1269 LFRCGNLVS-FPEGGLPCAKLTRLEISYCKRLQALP---KGLHNLTSLQELRII 1318 (1450)
Q Consensus 1269 l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~ 1318 (1450)
+++|.+.+. .+..+..+++|++|++++|++.+..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777766542 22455566777777777777666443 356777777777654
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=9.2e-12 Score=130.91 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=53.0
Q ss_pred CCcEEEEccCCCccchhc-ccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEee
Q 037733 1215 QLREIRISLCSKLESIAE-RLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEI 1293 (1450)
Q Consensus 1215 ~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 1293 (1450)
+|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444433322 2444445555555555544444444555555555555555554444444444555555555
Q ss_pred ccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1294 SYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1294 ~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
++|++.+..|..+..+++|+.|++++|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 555555544555555555555555555
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=3.5e-11 Score=143.17 Aligned_cols=291 Identities=14% Similarity=0.112 Sum_probs=173.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC---CcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF---DLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++||+++++.+.+++.... .......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 569999999999999886421 1233568899999999999999999983 33332 2467777766667777888
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCC----hhhHHhhhccccC-CCCCcEEEEecCchHH
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLS--GKKFLLVLDDVWNEN----YNYWVEFSRPFEA-GAQGSKIIVTTRNHEV 337 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v 337 (1450)
.++.+++........+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 88777754332223345555555655553 458999999995421 1233333332211 2345567888876533
Q ss_pred HHhcC-------CCCceeCCCCCHHHHHHHHHhcc---CCCCchhHHHHHHHHHHhC---CChHHHHHH-Hhhh--c---
Q 037733 338 AEIMG-------TVPPHPLKELSDNDCLAIFAQHS---LGPRELLDEIGKKLVSKCG---GLPLAAQTL-GGLL--R--- 398 (1450)
Q Consensus 338 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~i~~~~~---G~PLai~~~-~~~L--~--- 398 (1450)
...+. ....+.+++++.++..+++...+ +.......++.+.|++.++ |.|..+..+ .... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 22111 11478999999999999998753 2222334567778888887 999844333 2221 1
Q ss_pred C--CCCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhccCCC-C-cccchhHHHHHh--hh--CCCc
Q 037733 399 G--KHDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCSLLPK-D-YEFEEEEIILLW--CA--SGFL 470 (1450)
Q Consensus 399 ~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w--~a--~g~i 470 (1450)
. .-..+.++.++... ....+.-.+..+|...+..+..++...+ + ..+....+.+.. ++ .| +
T Consensus 256 ~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~ 324 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-V 324 (386)
T ss_dssp TCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-C
T ss_pred CCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-C
Confidence 1 11244444444322 1234666778899888887776663221 2 123333332211 11 12 1
Q ss_pred cCCCCCCchHHHHHHHHHHHHhcCCCcc
Q 037733 471 DHKESENPSEDLGRDFFKELYSRSFFQQ 498 (1450)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 498 (1450)
. .........+++.|...+++..
T Consensus 325 ~-----~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 325 E-----AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-----CCCHHHHHHHHHHHHHHTSEEE
T ss_pred C-----CCCHHHHHHHHHHHHhCCCEEE
Confidence 1 1123446778999999999976
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.7e-11 Score=141.65 Aligned_cols=266 Identities=11% Similarity=-0.034 Sum_probs=145.3
Q ss_pred cCCccEEEeecCCCc--cccCcccCCCCcccEEEeecCCCccccCCCCC--------CCCccEEEEccCCCCCCCccccc
Q 037733 1037 SCRLEYLGLSHCEGL--VKLPQSSLSLSSLRKIEIRNCSSLVSFPEVAL--------PSKLREIRIDGCDALKSLPEAWM 1106 (1450)
Q Consensus 1037 ~~~L~~L~Ls~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------~~~L~~L~L~~~~~~~~~~~~~~ 1106 (1450)
+++|+.|+|++|.+. .... ..++.+..+.+..+.+. ...+.. +++|+.|++.+ . +..++...+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcc---ccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-c-ccchhHHHh
Confidence 567888888888775 1111 12222344444443211 013445 67777777766 3 333333222
Q ss_pred cCCCCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCcc-EEEecCCCchh-hhh
Q 037733 1107 CDNNSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLK-FLEVNSCSKLE-SVA 1183 (1450)
Q Consensus 1107 ~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~-~L~l~~~~~~~-~~~ 1183 (1450)
.+|++|+.+++.+|.+....+ .+..+.++..+.... ...... ...+....+..+ .+|+ .+.+....... .+.
T Consensus 121 -~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~--~~~~~~-~~~i~~~~f~~~-~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 121 -KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS--SDAYRF-KNRWEHFAFIEG-EPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp -TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC--THHHHT-STTTTTSCEEES-CCCEEEEEECTTCCHHHHHH
T ss_pred -hcCcccceEEcCCCCccccchhhhcCCCceEEecCcc--hhhhhc-cccccccccccc-cccceeEEecCCCcHHHHHh
Confidence 467777777777766554332 222222233222211 000000 000000001111 2344 44444433322 122
Q ss_pred hhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCc
Q 037733 1184 ERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQ 1263 (1450)
Q Consensus 1184 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 1263 (1450)
.......++..+.+.++-...........+++|+.|++++|.+....+..|.+|++|++|++.+| +....+..|.++++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 22224556677777654322221111123678888888888777666667888888888888887 44444567888888
Q ss_pred cc-eEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEE
Q 037733 1264 LR-EIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELR 1316 (1450)
Q Consensus 1264 L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 1316 (1450)
|+ .+.+.+ .+...-+..|.+|++|+.|++++|.+...-+..|.++++|+.++
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 88 888877 55555566778888888888888888776667888888888876
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.5e-11 Score=129.20 Aligned_cols=133 Identities=10% Similarity=0.034 Sum_probs=108.6
Q ss_pred ccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCc-cccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1168 LKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPS-GLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1168 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
-+.+++++|.+. .+|..+ ..+|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|+|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 367777777663 344433 23888999999988766554 47889999999999999988888888899999999999
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCc
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALP 1303 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1303 (1450)
+|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999888777778899999999999999988888888888999999999999876543
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=2e-12 Score=130.01 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=107.3
Q ss_pred CCCccEEEecCCCch-hhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCce
Q 037733 1165 PPSLKFLEVNSCSKL-ESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKI 1243 (1450)
Q Consensus 1165 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 1243 (1450)
|++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 368999999999887 57777788899999999999988765 678889999999999999988788877789999999
Q ss_pred ecccCCCccc-ccccccCCCccceEeeccCCCccccC---CCCCCCCCcceEeecc
Q 037733 1244 DTSDCENLKI-LPSGLHNLHQLREIILFRCGNLVSFP---EGGLPCAKLTRLEISY 1295 (1450)
Q Consensus 1244 ~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~ 1295 (1450)
++++|.+.+. .+..+..+++|++|++++|++.+..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999997663 34778899999999999998865433 2566688999998863
No 138
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=1.7e-11 Score=136.05 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +.. ++|+.|++
T Consensus 41 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEEC
T ss_pred CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEc
Confidence 3555555555554432 2 35556666666666666654332 66666666666666666542 22 122 66777777
Q ss_pred ccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1246 SDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1246 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
++|.+.+ ++ .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.+. ..+..+++|+.|++++|
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 7766544 22 466667777777777766543 2 355566777777777776654 45666777777777776
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=2e-12 Score=164.88 Aligned_cols=192 Identities=17% Similarity=0.080 Sum_probs=108.2
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEE-----EeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCC
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERI-----RIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSL 1240 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-----~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 1240 (1450)
+.++.|++.+|.+... +..+.....|..+ ++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5688888888777653 2222122222222 22223322 34677888999999999999987 566666789999
Q ss_pred CceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCC
Q 037733 1241 EKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1241 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 1320 (1450)
++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999876 78888999999999999999987 77888888999999999999886 57878999999999999999
Q ss_pred CCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCC
Q 037733 1321 SPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDC 1390 (1450)
Q Consensus 1321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 1390 (1450)
. +.+ .+|..+.. ....+..|+|++|.+...+|. .|+.|++++|
T Consensus 327 ~-------l~~------~~p~~~~~--------~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 327 P-------LEK------QFLKILTE--------KSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp C-------CCS------HHHHHHHH--------HHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred c-------cCC------CChHHHhh--------cchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 4 221 11111100 001223478889887776664 5667777777
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=3.5e-11 Score=138.98 Aligned_cols=267 Identities=14% Similarity=0.030 Sum_probs=160.8
Q ss_pred CCccEEEeecCCCccccCcccCC-CCcccEEEeecCCCccccCCCCCCCCccEEEEccCCCCCCCccccccCC-------
Q 037733 1038 CRLEYLGLSHCEGLVKLPQSSLS-LSSLRKIEIRNCSSLVSFPEVALPSKLREIRIDGCDALKSLPEAWMCDN------- 1109 (1450)
Q Consensus 1038 ~~L~~L~Ls~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~------- 1109 (1450)
++++.|.++++-....+ ..+.. +++|+.|+|++|.+.......+..+.++.+.+..+. +|...+ .+
T Consensus 25 ~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF-~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAF-SNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTT-EEEETTEEE
T ss_pred CceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc----cCHHHh-ccccccccc
Confidence 35666666654211111 12222 788999999999876221122233335556555553 232222 35
Q ss_pred -CCCccEEEeeccCCccccc-CCCCCCCccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCc----hhhhh
Q 037733 1110 -NSSLEILCVLHCQLLTYIA-GVQLPPSLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSK----LESVA 1183 (1450)
Q Consensus 1110 -l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~----~~~~~ 1183 (1450)
+++|+.|++.+ .+..... .+..+++|+.|++.+.. +..+.- ..+... .++..+.+..... .....
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~-~aF~~~------~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLP-EALADS------VTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECT-TSSCTT------TCEEEECTTCTHHHHTSTTTTT
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccch-hhhcCC------CceEEecCcchhhhhccccccc
Confidence 89999999988 5554333 46678999999998742 222111 111111 2444444433211 11223
Q ss_pred hhcCCCCCcc-EEEeecccCcccc-CccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCC
Q 037733 1184 ERLDNNTSLE-RIRIYFCENLKNL-PSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNL 1261 (1450)
Q Consensus 1184 ~~~~~l~~L~-~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 1261 (1450)
..|.++..|+ .+.+......... ...-....+++.+.+.++-...........+++|+.|+|++|.+....+..|.++
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 4456677777 5555543322111 1111246677888887764333332222347899999999988766666788999
Q ss_pred CccceEeeccCCCccccCCCCCCCCCcc-eEeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1262 HQLREIILFRCGNLVSFPEGGLPCAKLT-RLEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1262 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
++|++|++.+| +...-+..|..|++|+ .+++.+ .+...-+..|.+|++|+.|++++|.
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 99999999887 5555556788899999 999988 6666556789999999999998774
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.5e-11 Score=126.28 Aligned_cols=126 Identities=19% Similarity=0.116 Sum_probs=75.1
Q ss_pred EEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCC
Q 037733 1194 RIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCG 1273 (1450)
Q Consensus 1194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1273 (1450)
.++++++.+. .+|..+ .++|++|++++|.+. .+|..+..+++|+.|+|++|.+.+..+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4444444443 233332 235666666666554 344555666666666666666555555556666666666666666
Q ss_pred CccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCc
Q 037733 1274 NLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPL 1323 (1450)
Q Consensus 1274 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1323 (1450)
+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555555666667777777777666544445666777777777777533
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=1.3e-10 Score=120.54 Aligned_cols=131 Identities=13% Similarity=-0.049 Sum_probs=71.9
Q ss_pred ccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceeccc
Q 037733 1168 LKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSD 1247 (1450)
Q Consensus 1168 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 1247 (1450)
.+.++++++.+... |.. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34555555544332 211 124666666666666554444555666666666666666554444455666666666666
Q ss_pred CCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1248 CENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1248 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 665544444455566666666666655533333334455666666666665543
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=4.4e-10 Score=124.30 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=119.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++||+.+++.+..++.... ...++.|+|++|+||||+|+.+++.......+.. ..+....+...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDNCREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCSHHHHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcccHHHHHHhccCC
Confidence 459999999999999997642 1347899999999999999999874321111100 00000000000000000
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-HHH-hc
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-VAE-IM 341 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~-~~ 341 (1450)
..+...........+.....+... ..+++.+||+||++..+...+..+...+.....+..+|+||+... +.. ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000000000001111111111111 235689999999977666677777766665556788888887643 111 11
Q ss_pred CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHHhhh
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLGGLL 397 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~L 397 (1450)
.....+++++++.++..+++...+.... ...++..+.|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2235789999999999999987653221 2335678899999999999988776543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=1.7e-10 Score=119.65 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=108.9
Q ss_pred CccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeec
Q 037733 1191 SLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILF 1270 (1450)
Q Consensus 1191 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1270 (1450)
+.+.++++++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35788898888764 44433 4799999999999987777778899999999999999877666678999999999999
Q ss_pred cCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCC
Q 037733 1271 RCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1271 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 999987666667889999999999999987666667899999999999995
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=122.10 Aligned_cols=128 Identities=16% Similarity=0.045 Sum_probs=97.4
Q ss_pred cEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccC
Q 037733 1169 KFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDC 1248 (1450)
Q Consensus 1169 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 1248 (1450)
+.++++++.+.. +|..+ .++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666665543 33322 357888888888776 56677888888888888888888777777888888888888888
Q ss_pred CCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcc
Q 037733 1249 ENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQ 1300 (1450)
Q Consensus 1249 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1300 (1450)
.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8777777778888888888888888875555567778889999999888764
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=1.5e-09 Score=127.75 Aligned_cols=219 Identities=13% Similarity=0.079 Sum_probs=150.1
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
+|+.+.+.. .+......+|.+|++|+.+++.+|.+.......|. +.+|+.+.+..+ +...-...|.+|++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 344555443 33333445677888888888888877755555555 578888888744 555555678888888888888
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCc-----ccCcccccCCCCCceEEEeCCC
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRL-----QALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
++ +...-...|.+ .+|+.+.+. +.+...-...|..|++|+.+++.+|... ...+..|.+|++|+.++|.++
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES- 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-
T ss_pred CC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-
Confidence 75 33333345555 788888884 3455455667778889999998887654 334567888999998888754
Q ss_pred CccccccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC--
Q 037733 1322 PLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK-- 1399 (1450)
Q Consensus 1322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-- 1399 (1450)
+..++. .+|..+++|+.+.+.++ ....-...|.++ +|+.+++++|.. ..++..
T Consensus 311 --------------i~~I~~--------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~-~~l~~~~F 365 (401)
T 4fdw_A 311 --------------IRILGQ--------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP-PQVFEKVW 365 (401)
T ss_dssp --------------CCEECT--------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC-CBCCCSSC
T ss_pred --------------eEEEhh--------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC-cccccccc
Confidence 333333 35677889999999765 344445679999 999999999954 334332
Q ss_pred -CCccccccccccCChhhH
Q 037733 1400 -GLPSSLLRLRLERCPLIG 1417 (1450)
Q Consensus 1400 -~~~~~L~~L~l~~n~l~~ 1417 (1450)
+.+.++..|++..+.+..
T Consensus 366 ~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 366 YGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CCSCTTCCEEEECGGGHHH
T ss_pred cCCCCCccEEEeCHHHHHH
Confidence 344688999999887643
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=3.6e-11 Score=124.56 Aligned_cols=129 Identities=13% Similarity=-0.011 Sum_probs=78.0
Q ss_pred CCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccce
Q 037733 1187 DNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLRE 1266 (1450)
Q Consensus 1187 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1266 (1450)
..+++|++|++++|.+.. +|......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345566666666666553 233222233666666666666653 45566667777777777655443333466677777
Q ss_pred EeeccCCCccccCC--CCCCCCCcceEeeccCCCcccCcc----cccCCCCCceEEEeCC
Q 037733 1267 IILFRCGNLVSFPE--GGLPCAKLTRLEISYCKRLQALPK----GLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1267 L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n 1320 (1450)
|++++|.+. .+|. .+..+++|+.|++++|++.. +|. .+..+++|+.|++++|
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 777777663 3443 45556777777777777654 344 3677777777777776
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=6.4e-09 Score=122.28 Aligned_cols=148 Identities=8% Similarity=0.002 Sum_probs=96.7
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCc-----cchhcccCCCCCCC
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKL-----ESIAERLDNNTSLE 1241 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~ 1241 (1450)
+|+.+++..+ +......+|.+ .+|+.+.+. +.+...-...|.++++|+.+.+.+|... ...+..|.+|++|+
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 4555555542 22233344555 577777773 3444444567777888888888776554 34455677888888
Q ss_pred ceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCC-CCceEEEeCC
Q 037733 1242 KIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLT-SLQELRIIGD 1320 (1450)
Q Consensus 1242 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n 1320 (1450)
.++|.+ .+...-...|.+|++|+.+.+..+ +...-...|.+| +|+.+++.+|......+..|..++ +++.|++-.+
T Consensus 304 ~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 304 RFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred eEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 888874 344444467778888888888554 444445567777 888888888877665556677774 6778887665
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=7.2e-11 Score=122.25 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=93.5
Q ss_pred CCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceec
Q 037733 1166 PSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDT 1245 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 1245 (1450)
++|++|++++|.+... +......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 5677777777766643 33223334888888888887764 56778888888888888887654444577888888888
Q ss_pred ccCCCcccccc--cccCCCccceEeeccCCCccccCCC----CCCCCCcceEeeccCCCcc
Q 037733 1246 SDCENLKILPS--GLHNLHQLREIILFRCGNLVSFPEG----GLPCAKLTRLEISYCKRLQ 1300 (1450)
Q Consensus 1246 ~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~~~~ 1300 (1450)
++|.+ +.+|. .+..+++|+.|++++|++. ..|.. +..+++|+.||+++|....
T Consensus 96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88876 44554 6778888888888888875 44543 5667888899888887654
No 150
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.02 E-value=2.6e-09 Score=115.99 Aligned_cols=184 Identities=14% Similarity=0.073 Sum_probs=116.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1450)
..++||++.++.+.+++.... ...+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 458999999999999996542 23388999999999999999987321 11222 23344443333322222211
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHH-H-HhcCCC
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEV-A-EIMGTV 344 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v-~-~~~~~~ 344 (1450)
........ .-.+++.+||+||++......+..+...+.....+.++|+||+.... . ......
T Consensus 90 -~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 90 -KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 11111000 01357899999999876655566666655555567888888876431 1 111223
Q ss_pred CceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 345 PPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
..+++.+++.++..+++...+.. .....++....|++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999999876532 111235677889999999998655443
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=3.5e-12 Score=135.12 Aligned_cols=132 Identities=16% Similarity=0.103 Sum_probs=104.4
Q ss_pred hhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCC
Q 037733 1182 VAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNL 1261 (1450)
Q Consensus 1182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 1261 (1450)
++..+..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 34477788999999999998876 56 7888899999999999877 466666667889999999998765 44 57888
Q ss_pred CccceEeeccCCCccccC-CCCCCCCCcceEeeccCCCcccCcc----------cccCCCCCceEEEeCC
Q 037733 1262 HQLREIILFRCGNLVSFP-EGGLPCAKLTRLEISYCKRLQALPK----------GLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1262 ~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~l~~n 1320 (1450)
++|++|++++|.+....+ ..+..+++|++|++++|++.+..|. .+..+++|+.|+ +|
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~ 182 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GM 182 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CG
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cc
Confidence 999999999998764322 3466788999999999998776554 278899999887 55
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=6.4e-12 Score=133.10 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=72.6
Q ss_pred cccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCc
Q 037733 1257 GLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGM 1336 (1450)
Q Consensus 1257 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 1336 (1450)
.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+.. +|..+..+++|+.|++++|. +.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~-------l~~----- 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQ-------IAS----- 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEE-------CCC-----
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCc-------CCc-----
Confidence 55556666666666665543 34 44455666666666666553 45555555666666666662 111
Q ss_pred ccCCCCCcccccCCCCCCCcccceeeccccCCCcccc-ccCCCCCCCCeeeccCCCCCCCCCC-----------CCCccc
Q 037733 1337 VSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLS-SSIVDLQNLTELIIEDCPKLKYFPE-----------KGLPSS 1404 (1450)
Q Consensus 1337 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-----------~~~~~~ 1404 (1450)
+| .+..+++|++|++++|.+....+ ..+..+++|++|++++|++...+|. ...+++
T Consensus 108 --l~----------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 108 --LS----------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp --HH----------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred --CC----------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 11 11234566666666665433221 3566777777777777765444333 234566
Q ss_pred cccccccCChhhH
Q 037733 1405 LLRLRLERCPLIG 1417 (1450)
Q Consensus 1405 L~~L~l~~n~l~~ 1417 (1450)
|+.|| +|+++.
T Consensus 176 L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 176 LKKLD--GMPVDV 186 (198)
T ss_dssp CSEEC--CGGGTT
T ss_pred cEEEC--CcccCH
Confidence 66665 666654
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=3.2e-09 Score=108.70 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=42.5
Q ss_pred CCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEE
Q 037733 1238 TSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRI 1317 (1450)
Q Consensus 1238 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 1317 (1450)
++|++|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|+|++|++.+..+..+..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34455555555544444444555555555555555544333333444555555555555555443444555555555555
Q ss_pred eCCC
Q 037733 1318 IGDS 1321 (1450)
Q Consensus 1318 ~~n~ 1321 (1450)
++|+
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5553
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=2.1e-09 Score=123.93 Aligned_cols=267 Identities=13% Similarity=0.053 Sum_probs=145.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
..++|++..++++..++..... .......+.|+|++|+|||++|+++++. ... ...++..+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH------
Confidence 4599999999998888753210 0112356889999999999999999873 221 233444332222111
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCC------------------CCCcEEE
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAG------------------AQGSKII 329 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~------------------~~gs~il 329 (1450)
+...+...+ .++.+|++|+++.........+...+... ..+.++|
T Consensus 80 ----------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 ----------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111111111 35668999999776544444443322211 1235666
Q ss_pred EecCchH-HHHhc-CC-CCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHHHHHhhhcC------
Q 037733 330 VTTRNHE-VAEIM-GT-VPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQTLGGLLRG------ 399 (1450)
Q Consensus 330 vTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~L~~------ 399 (1450)
.||.... +...+ .. ...+.+.+++.+|..+++...+... .....+....|++.++|.|-.+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 6665432 11111 11 2468999999999999987765321 1233577889999999999887766544321
Q ss_pred C--CCHHHHHHHHhcccccCCccccChhhHHHHhhcCCChhHHHHHhHhc-cCCCC----------cccchhHHHH----
Q 037733 400 K--HDRRVWEGVLSSKIWELPEERCGIIPALAVSYYYLPPTLRQCFAYCS-LLPKD----------YEFEEEEIIL---- 462 (1450)
Q Consensus 400 ~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~li~---- 462 (1450)
. -+.+....++... ...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 223 ~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 223 EEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 1 1223333333221 1122334444444433322 22111 1122333222
Q ss_pred HhhhCCCccCCCCCCchHHHHHHHHH-HHHhcCCCcc
Q 037733 463 LWCASGFLDHKESENPSEDLGRDFFK-ELYSRSFFQQ 498 (1450)
Q Consensus 463 ~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~ 498 (1450)
+-+..|++.....+....+.|.+||+ ++.+|+|||+
T Consensus 288 ~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34567888765556677888999997 8889998885
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.86 E-value=4.2e-08 Score=116.22 Aligned_cols=212 Identities=13% Similarity=0.034 Sum_probs=113.2
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTS 1246 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 1246 (1450)
+|+.+.+.++ ........|.++++|+.+.+..+ +.......+.++..|+.+.+..+... +......+++|+.+.+.
T Consensus 163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIP 238 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEEC
T ss_pred CCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEEC
Confidence 4555555432 12223344555666666665543 22222344555666665555443222 22223344556666554
Q ss_pred cCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCcccc
Q 037733 1247 DCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDD 1326 (1450)
Q Consensus 1247 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 1326 (1450)
... .......+..+.+|+.+.+..+.. ......+..+..++.+....+.+ ....+..+.+|+.+.+..+
T Consensus 239 ~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~------ 307 (394)
T 4fs7_A 239 DSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS------ 307 (394)
T ss_dssp TTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT------
T ss_pred CCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc------
Confidence 431 222233455666666666655422 23344455566666666654332 1234666677777776554
Q ss_pred ccccCCCCCcccCCCCCcccccCCCCCCCcccceeeccccCCCccccccCCCCCCCCeeeccCCCCCCCCCCC--CCccc
Q 037733 1327 LQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTELIIEDCPKLKYFPEK--GLPSS 1404 (1450)
Q Consensus 1327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~ 1404 (1450)
+..++. .+|..+++|+.+++.++ ....-...|.+|++|+.+++..+ ++.++.. ..+++
T Consensus 308 ---------i~~I~~--------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 308 ---------VKFIGE--------EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN 367 (394)
T ss_dssp ---------CCEECT--------TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred ---------cceech--------hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence 222222 35667778888888654 23333456788888888888766 5555544 55677
Q ss_pred cccccccCC
Q 037733 1405 LLRLRLERC 1413 (1450)
Q Consensus 1405 L~~L~l~~n 1413 (1450)
|+.+++.++
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 888887654
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=6.4e-09 Score=106.82 Aligned_cols=103 Identities=11% Similarity=-0.009 Sum_probs=46.5
Q ss_pred cEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccC
Q 037733 1193 ERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRC 1272 (1450)
Q Consensus 1193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1272 (1450)
+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555543 3333332 45555555555555444444445555555555555443333233344444444444444
Q ss_pred CCccccCCCCCCCCCcceEeeccCCC
Q 037733 1273 GNLVSFPEGGLPCAKLTRLEISYCKR 1298 (1450)
Q Consensus 1273 ~~~~~~~~~~~~l~~L~~L~l~~n~~ 1298 (1450)
.+.+..+..+..+++|+.|+|++|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 44332222233344444444444443
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=7e-09 Score=106.19 Aligned_cols=107 Identities=12% Similarity=-0.041 Sum_probs=69.9
Q ss_pred ccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeecc
Q 037733 1192 LERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFR 1271 (1450)
Q Consensus 1192 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 1271 (1450)
.+.|++++|.+.. +|..+ .++|++|++++|.+.+..|..+..+++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3455666655543 44333 25667777777776666666666777777777777776655555566777777777777
Q ss_pred CCCccccCCCCCCCCCcceEeeccCCCccc
Q 037733 1272 CGNLVSFPEGGLPCAKLTRLEISYCKRLQA 1301 (1450)
Q Consensus 1272 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1301 (1450)
|.+.+..+..+..+++|+.|+|++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777655555566677777777777776543
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.3e-08 Score=117.41 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=116.3
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC-CcEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF-DLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++... ...+ ...+++..+....... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 459999999999999986542 22388999999999999999997421 1111 1233444333222221 1222
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-HH-HhcCC
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQL-SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-VA-EIMGT 343 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~-~~~~~ 343 (1450)
+..+.... ..+ .+++.++|+||++......+..+...+.....++++|+||+... +. .....
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22221000 011 35689999999987665666666666655556778888876642 11 11123
Q ss_pred CCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChH-HHHHHHh
Q 037733 344 VPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPL-AAQTLGG 395 (1450)
Q Consensus 344 ~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PL-ai~~~~~ 395 (1450)
...+++.+++.++..+++...+... ....++.+..|++.++|.|. |+..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3478999999999999998754211 11235677889999999995 4444443
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=1.5e-07 Score=111.46 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=95.0
Q ss_pred CCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceE
Q 037733 1188 NNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREI 1267 (1450)
Q Consensus 1188 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 1267 (1450)
...+|+.+.+... ........+.++..|+.+.+..+.. ......+..++.++.+....+. .....+..+.+|+.+
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEV 302 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEE
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee---ecccccccccccccc
Confidence 3456666666432 2222234566667777777765432 2333455666667766665432 112356667777777
Q ss_pred eeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccc
Q 037733 1268 ILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIR 1347 (1450)
Q Consensus 1268 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1450)
.+.++ +...-...|..|.+|+.++|..+ +...-...|.+|++|+.+++..+ +.++..
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~---------------l~~I~~------ 359 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS---------------LRKIGA------ 359 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT---------------CCEECT------
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc---------------ccEehH------
Confidence 77554 33333445666777777777543 33333456777777777776554 222222
Q ss_pred cCCCCCCCcccceeeccccCCCccccccCCCCCCCCee
Q 037733 1348 LGNALPLPASLTSLGISRFPNLERLSSSIVDLQNLTEL 1385 (1450)
Q Consensus 1348 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 1385 (1450)
.+|..+++|+.+++..+ +..+...|.++++|+.+
T Consensus 360 --~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 --NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp --TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred --HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 35666777777777654 34445567777777654
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=1.1e-08 Score=105.02 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=57.8
Q ss_pred cEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccC
Q 037733 1217 REIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYC 1296 (1450)
Q Consensus 1217 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 1296 (1450)
+.+++++|.+. .+|..+. ++|+.|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566665553 2343332 55666666666655555555666666666666666555433333455566666666666
Q ss_pred CCcccCcccccCCCCCceEEEeCCC
Q 037733 1297 KRLQALPKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1297 ~~~~~~~~~l~~l~~L~~L~l~~n~ 1321 (1450)
.+....+..+..+++|+.|+|++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 6655444446666666666666664
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=5.9e-10 Score=129.81 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=94.3
Q ss_pred CCccEEEecCCCchhhh----hhhcC-CCCCccEEEeecccCccccCcc-ccCCCCCcEEEEccCCCccchhccc-----
Q 037733 1166 PSLKFLEVNSCSKLESV----AERLD-NNTSLERIRIYFCENLKNLPSG-LHNLRQLREIRISLCSKLESIAERL----- 1234 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~----~~~~~-~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~----- 1234 (1450)
++|++|++++|.+.... ...+. ..++|++|+|++|.+....... ...+++|++|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46777777777765432 22222 2357777777777765432222 2235567777777777764332222
Q ss_pred CCCCCCCceecccCCCcc----cccccccCCCccceEeeccCCCccc----cCCCCCCCCCcceEeeccCCCccc----C
Q 037733 1235 DNNTSLEKIDTSDCENLK----ILPSGLHNLHQLREIILFRCGNLVS----FPEGGLPCAKLTRLEISYCKRLQA----L 1302 (1450)
Q Consensus 1235 ~~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~ 1302 (1450)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+... ++..+..+++|+.|+|++|.+... +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 345677888888777543 2334456677788888887776532 233334456788888888877643 3
Q ss_pred cccccCCCCCceEEEeCCC
Q 037733 1303 PKGLHNLTSLQELRIIGDS 1321 (1450)
Q Consensus 1303 ~~~l~~l~~L~~L~l~~n~ 1321 (1450)
+..+...++|++|+|++|.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhCCCCCEEeccCCC
Confidence 3345566778888888873
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=8.9e-09 Score=119.84 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=35.6
Q ss_pred CccEEEecCCCchhhhhhhc-----CCCCCccEEEeecccCccc----cCccccCCCCCcEEEEccCCCccc----hhcc
Q 037733 1167 SLKFLEVNSCSKLESVAERL-----DNNTSLERIRIYFCENLKN----LPSGLHNLRQLREIRISLCSKLES----IAER 1233 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~ 1233 (1450)
+|++|++++|.+.......+ ...++|++|++++|.+... ++..+..+++|++|+|++|.+... ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45555555555443222111 2334555555555554321 122233444455555555544321 1223
Q ss_pred cCCCCCCCceecccCCC
Q 037733 1234 LDNNTSLEKIDTSDCEN 1250 (1450)
Q Consensus 1234 ~~~~~~L~~L~L~~n~~ 1250 (1450)
+..+++|++|+|++|.+
T Consensus 207 L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGA 223 (372)
T ss_dssp GGGCSCCCEEECCSSCC
T ss_pred HhcCCCcCeEECCCCCC
Confidence 33344444444444443
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.4e-07 Score=108.78 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=115.5
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC-CcEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF-DLKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++... ...+ ...+.+..+....... .++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-HHHH
Confidence 348999999999999986642 23489999999999999999997421 1111 1233333332111111 1111
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-----HHHhc
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-----VAEIM 341 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-----v~~~~ 341 (1450)
+........ ...+++.++|+||++......+..+...+.....++++|+||.... +...
T Consensus 97 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr- 160 (327)
T 1iqp_A 97 VKEFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR- 160 (327)
T ss_dssp HHHHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT-
T ss_pred HHHHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh-
Confidence 111100000 0125688999999987666666777666655556788888887642 2222
Q ss_pred CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHHhh
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLGGL 396 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~~~ 396 (1450)
...+.+.+++.++..+++...+.... ...++....|++.++|.|..+..+...
T Consensus 161 --~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 161 --CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp --EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 23689999999999999887653222 234567888999999999866554433
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=3e-06 Score=100.14 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=38.3
Q ss_pred CcccCCCCcccEEEeecCC--CccccC--CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCC
Q 037733 1055 PQSSLSLSSLRKIEIRNCS--SLVSFP--EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGV 1130 (1450)
Q Consensus 1055 ~~~~~~l~~L~~L~l~~~~--~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 1130 (1450)
..+|.+|.+|+.+.+..+. ....++ .+..+.+|+.+.+..+ +..++...+ ..+.+|+.+.+..+...-....+
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF-~~c~~L~~i~lp~~~~~I~~~~F 156 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF-HHCEELDTVTIPEGVTSVADGMF 156 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT-TTCTTCCEEECCTTCCEECTTTT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh-hhhcccccccccceeeeecccce
Confidence 3456666666666665542 122222 4455555655544332 222222211 35666666666543222111233
Q ss_pred CCCCCccEEEEe
Q 037733 1131 QLPPSLKRLDIY 1142 (1450)
Q Consensus 1131 ~~~~~L~~L~l~ 1142 (1450)
..+.+|+.+.+.
T Consensus 157 ~~c~~L~~i~~~ 168 (394)
T 4gt6_A 157 SYCYSLHTVTLP 168 (394)
T ss_dssp TTCTTCCEEECC
T ss_pred eccccccccccc
Confidence 344455555443
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=7.7e-07 Score=104.74 Aligned_cols=195 Identities=16% Similarity=0.123 Sum_probs=114.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++||+..++.+...+..+.. ...+.|+|++|+||||+|+.+++.......+.. ..+.... ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~----~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCD----NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSSH----HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcccH----HHHHHh
Confidence 3499999999999999966431 347889999999999999999874321111100 0000000 001111
Q ss_pred HH-------hhcCCCCCCCCHHHHHHHHHHH-hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-HH
Q 037733 268 TS-------IVAGQNVDNHDLNKLQVELNKQ-LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-VA 338 (1450)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~ 338 (1450)
.. +.........+..++...+... ..+++.++|+||++.-+...+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000001122233222222111 135678999999977665666666666655455667777765432 11
Q ss_pred -HhcCCCCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 339 -EIMGTVPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 339 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
........+++.+++.++..+++...+.. ......+.+..|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11223357899999999999988765421 111235667889999999998876654
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=3e-07 Score=106.95 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=65.5
Q ss_pred EEEecCCCchhhhhhhcCCCCCccEEEeec-ccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccC
Q 037733 1170 FLEVNSCSKLESVAERLDNNTSLERIRIYF-CENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDC 1248 (1450)
Q Consensus 1170 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 1248 (1450)
.++.++++.+..+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666523334555 66667777777774 6666555566677777777777777766666666666777777777777
Q ss_pred CCcccccccccCCCccceEeeccCCCc
Q 037733 1249 ENLKILPSGLHNLHQLREIILFRCGNL 1275 (1450)
Q Consensus 1249 ~~~~~~~~~l~~l~~L~~L~l~~n~~~ 1275 (1450)
.+.+..+..+..++ |+.|+|.+|++.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 65544444444444 677777666654
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=2.3e-07 Score=107.90 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=67.4
Q ss_pred CCccEEEecC-CCchhhhhhhcCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhcccCCCCCCCcee
Q 037733 1166 PSLKFLEVNS-CSKLESVAERLDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKID 1244 (1450)
Q Consensus 1166 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 1244 (1450)
.+|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 5788888886 777777777788888888888888888887777788888888888888888765555555554 88888
Q ss_pred cccCCCcc
Q 037733 1245 TSDCENLK 1252 (1450)
Q Consensus 1245 L~~n~~~~ 1252 (1450)
|.+|++..
T Consensus 110 l~~N~~~c 117 (347)
T 2ifg_A 110 LSGNPLHC 117 (347)
T ss_dssp CCSSCCCC
T ss_pred eeCCCccC
Confidence 88887654
No 168
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.46 E-value=7.9e-07 Score=98.83 Aligned_cols=172 Identities=10% Similarity=-0.009 Sum_probs=104.9
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc---cC--CcEEEEEeCCccCHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD---HF--DLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~~ 263 (1450)
.+.|||+|++++...|...- ..+....+.|+|++|+|||++|+.|+++..... .. -..+++++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 37899999999998886532 234567889999999999999999998532111 11 135667777777888999
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHH--hCCCcEEEEEeCCCCCChhhHHhhhccccC-CCCCc--EEEEecCchH--
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQ--LSGKKFLLVLDDVWNENYNYWVEFSRPFEA-GAQGS--KIIVTTRNHE-- 336 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs--~ilvTtr~~~-- 336 (1450)
..|+.++.+.........+.+...+... -.++++++|||+++.-. ..+.+...+.+ ....+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654322223344444444432 24678999999996642 11122211111 01223 2333343321
Q ss_pred ---H----HHhcCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 337 ---V----AEIMGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 337 ---v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
+ ...++ ...+.+.+++.+|-.+++..++
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 12222 2468999999999999887654
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=5e-06 Score=98.28 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=36.5
Q ss_pred cccCCCC-cccEEEeecCCCccccC--CCCCCCCccEEEEccCC--CCCCCccccccCCCCCccEEEeec
Q 037733 1056 QSSLSLS-SLRKIEIRNCSSLVSFP--EVALPSKLREIRIDGCD--ALKSLPEAWMCDNNSSLEILCVLH 1120 (1450)
Q Consensus 1056 ~~~~~l~-~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~l~~L~~L~l~~ 1120 (1450)
.+|.++. .|+.+.+... .+.+. .|..+.+|+.+.+..+. .++.+....+ .++.+|+.+.+..
T Consensus 57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILD 123 (394)
T ss_dssp TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGT
T ss_pred hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCC
Confidence 3566664 5888888654 22333 67788888888887653 2333332222 3566666655543
No 170
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.43 E-value=7.8e-07 Score=102.13 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=112.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|++..++.+.+++..+ ....+.++|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 45899999999998888543 223388999999999999999987321 11111 1223333321110
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHH--h-CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-HHH-hc
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQ--L-SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-VAE-IM 341 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~-~~ 341 (1450)
....+....+... + .+++.++|+|+++.-.......+...+.....++++|+||.... +.. ..
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 0111111111111 1 25688999999977665666667666665556778888776543 111 11
Q ss_pred CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHH
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
.....+++.+++.++..+++...+.... ...++....|++.++|.+-.+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234789999999999998876653221 2345677889999999997655443
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=3.3e-07 Score=105.45 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=63.9
Q ss_pred cCCCCCccEEEeecccCccccCccccCCCCCcEEEEccCCCccchhccc--CCCCCCCceecccC--CCcc-----cccc
Q 037733 1186 LDNNTSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCSKLESIAERL--DNNTSLEKIDTSDC--ENLK-----ILPS 1256 (1450)
Q Consensus 1186 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~L~~n--~~~~-----~~~~ 1256 (1450)
+..+|+|+.|++++|... .++. + .+++|++|+|..|.+.......+ ..+|+|+.|+|+.+ ...+ .+..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 334555666666554221 1222 2 25566666666555543222222 24566666665421 1000 1111
Q ss_pred cc--cCCCccceEeeccCCCccccCCC---CCCCCCcceEeeccCCCccc----CcccccCCCCCceEEEeCC
Q 037733 1257 GL--HNLHQLREIILFRCGNLVSFPEG---GLPCAKLTRLEISYCKRLQA----LPKGLHNLTSLQELRIIGD 1320 (1450)
Q Consensus 1257 ~l--~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n 1320 (1450)
.+ ..+|+|++|++++|.+....+.. ...+++|++|+|+.|.+... ++..+..+++|+.|+|++|
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 12 23567777777666654321110 11246777777777766543 2333445677777777766
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=7.1e-07 Score=102.63 Aligned_cols=34 Identities=35% Similarity=0.530 Sum_probs=20.6
Q ss_pred CCccEEEecCCCchhhhhhhc--CCCCCccEEEeec
Q 037733 1166 PSLKFLEVNSCSKLESVAERL--DNNTSLERIRIYF 1199 (1450)
Q Consensus 1166 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~ 1199 (1450)
++|++|++..|.+.......+ ..+++|++|+|+.
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 577777777776654333333 2567777777753
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.29 E-value=7.6e-06 Score=94.48 Aligned_cols=175 Identities=16% Similarity=0.116 Sum_probs=105.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|++..++++..++..... .......|.|+|++|+|||++|+.+++. ....| +.+.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 4699999999999998865311 1123456889999999999999999873 32222 2233221111
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC------------------CCcEEE
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA------------------QGSKII 329 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~------------------~gs~il 329 (1450)
.......+.. ..+..+|+||+++.........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2456789999997665444444443332211 124566
Q ss_pred EecCchH-----HHHhcCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHH
Q 037733 330 VTTRNHE-----VAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 330 vTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
.+|.... +... ....+.+.+++.++...++...+.... ....+....|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 6655422 2221 125689999999999999877653211 2345677888999999995554443
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.27 E-value=9.6e-07 Score=92.84 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=38.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999653 2356789999999999999999874
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=7.3e-06 Score=95.48 Aligned_cols=192 Identities=13% Similarity=0.064 Sum_probs=113.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|+++.++.+..++..+. ...+.|+|++|+||||+|+.+++.......+. ....+..+.......+ ++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 458999999999999985542 22388999999999999999987421111121 2333343332222222 222
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-----HHHhc
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-----VAEIM 341 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-----v~~~~ 341 (1450)
+.............. .....-.+++-+|++|+++.........+...+.......++|++|.... +...+
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222211110000000 00111124567999999977655555666655554445667777765432 22222
Q ss_pred CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChHHHHHHH
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
..+.+.+++.++....+...+.... ...++..+.|++.++|.|-.+..+.
T Consensus 185 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 ---SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ---EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ---ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3689999999999988877543221 2346778899999999998655443
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.20 E-value=1.1e-06 Score=96.22 Aligned_cols=172 Identities=14% Similarity=0.089 Sum_probs=99.3
Q ss_pred ceecc---hhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 189 EVYGR---EIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 189 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
.++|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+.+....+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 46663 34555565555432 2467889999999999999999983 3333334666665432110
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhh--HHhhhccccC-CCCC-cEEEEecCch------
Q 037733 266 ILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNY--WVEFSRPFEA-GAQG-SKIIVTTRNH------ 335 (1450)
Q Consensus 266 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~~~~~l~~-~~~g-s~ilvTtr~~------ 335 (1450)
+. . .+ +.+ .++.+||+||++...... ...+...+.. ...+ .++|+||+..
T Consensus 95 ----~~-----~---------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ----ST-----A---------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----CG-----G---------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----HH-----H---------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 011 346789999996643222 2223222211 0112 2477777632
Q ss_pred ---HHHHhcCCCCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 336 ---EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 336 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
.+...+.....+++.+++.++..+++...+.. .....++....|++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 22222222357899999999999999776521 112345677889999999887665543
No 177
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.15 E-value=0.00016 Score=84.90 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=32.3
Q ss_pred cCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCc
Q 037733 1234 LDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQ 1313 (1450)
Q Consensus 1234 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 1313 (1450)
+.++.+|+.+.+..+ +...-...+.++.+|+.+.+..+ +...-...+..|.+|+.+.+.++.+...-+..|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344444444444332 11122233444444444444322 2112222333444444444444433333333444444444
Q ss_pred eEEE
Q 037733 1314 ELRI 1317 (1450)
Q Consensus 1314 ~L~l 1317 (1450)
.+.|
T Consensus 314 ~i~l 317 (379)
T 4h09_A 314 SVTL 317 (379)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4444
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.10 E-value=4e-05 Score=87.68 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccc--------------------cCCcEEEEE
Q 037733 193 REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQD--------------------HFDLKTWTC 252 (1450)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 252 (1450)
.++..+.+...+..+. -...+.++|++|+||||+|+.+++...-.. |++ ..++.
T Consensus 7 ~~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp GHHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred hHHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 3556677777775442 245788999999999999999987321110 122 22222
Q ss_pred eCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH----hCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 037733 253 VSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQ----LSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKI 328 (1450)
Q Consensus 253 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 328 (1450)
... .......+++...+... ..+++-++|+|+++.-.....+.+...+.....++.+
T Consensus 81 ~~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 210 00111222222222111 1356789999999876666666676666554556777
Q ss_pred EEecCchH-HHH-hcCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 037733 329 IVTTRNHE-VAE-IMGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 329 lvTtr~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
|++|...+ +.. .......+++.++++++..+.+.... ...++.+..+++.++|.|..+..+.
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 76665542 222 12333578999999999999988765 1124566789999999997665543
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=1.1e-05 Score=95.91 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=97.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCC--cEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD--LKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
...+.|+|++|+||||||+.+++ .....+. .+++++. ..+..++...+... .. ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~------~~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KL----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT------CH----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc------cH----HHHHHHh
Confidence 56789999999999999999998 3333332 2444443 23444444444321 11 1233444
Q ss_pred CCCcEEEEEeCCCCCCh--hhHHhhhccccC-CCCCcEEEEecCc---------hHHHHhcCCCCceeCCCCCHHHHHHH
Q 037733 293 SGKKFLLVLDDVWNENY--NYWVEFSRPFEA-GAQGSKIIVTTRN---------HEVAEIMGTVPPHPLKELSDNDCLAI 360 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~~--~~~~~~~~~l~~-~~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 360 (1450)
+.+.-+|++||++.... ...+.+...+.. ...|..||+||.. ..+...+.....+.+.+++.++-.++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44677999999965432 222333333221 2356788888875 23344444445789999999999999
Q ss_pred HHhccCCC-CchhHHHHHHHHHHhCCChHHHHH
Q 037733 361 FAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQT 392 (1450)
Q Consensus 361 f~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~ 392 (1450)
+.+.+... ....+++...|++.++|.+-.+.-
T Consensus 272 L~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHGELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 87765211 112235677888899998865543
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=5.2e-06 Score=93.24 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=99.7
Q ss_pred cceecchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLR-------NDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.+++|.++.++++.+.+...... +-...+.+.|+|++|+|||++|+++++. .... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH--
Confidence 45899999999998887432000 0122456889999999999999999973 2222 22222221110
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC-----------Chh---hHHhhhcccc--CCCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE-----------NYN---YWVEFSRPFE--AGAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~~~~~l~--~~~~ 324 (1450)
. . ...........+......++.+|+||+++.. ... ....+...+. ....
T Consensus 90 ------------~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 ------------K-F-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------C-S-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------h-c-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 0 0 0011122222333333456789999999431 111 1111222221 1234
Q ss_pred CcEEEEecCchHHHH-h-c---CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCC-ChHHHHH
Q 037733 325 GSKIIVTTRNHEVAE-I-M---GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGG-LPLAAQT 392 (1450)
Q Consensus 325 gs~ilvTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~ 392 (1450)
+..||.||...+... . . .....+.+...+.++..+++..++.............+++.+.| .|-.|..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 567788887542211 1 1 11236889999999999999877643221112234667777777 4434443
No 181
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=0.00039 Score=81.56 Aligned_cols=289 Identities=10% Similarity=0.029 Sum_probs=139.2
Q ss_pred ccCCCCcccEEEeecCCCccccC--CCCCCCCccEEEEccCCCCCCCccccccCCCCCccEEEeeccCCcccccCCCCCC
Q 037733 1057 SSLSLSSLRKIEIRNCSSLVSFP--EVALPSKLREIRIDGCDALKSLPEAWMCDNNSSLEILCVLHCQLLTYIAGVQLPP 1134 (1450)
Q Consensus 1057 ~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 1134 (1450)
++....+|+.+.+... .+.++ .+..|.+|+.+.+..+ +..++...+ .++ +|+.+.+..+ +...........
T Consensus 41 ~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF-~~c-~l~~i~~~~~-l~~I~~~aF~~~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAF-ADT-KLQSYTGMER-VKKFGDYVFQGT 113 (379)
T ss_dssp TGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT--CCEECTTTT-TTC-CCCEEEECTT-CCEECTTTTTTC
T ss_pred ccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc--ceEechhhh-cCC-CCceEECCce-eeEeccceeccC
Confidence 4556778999998753 23343 6788899999999654 444444333 244 6777776543 222111122223
Q ss_pred CccEEEEeCCCCccccccccccccccccCCCCCccEEEecCCCchhhhhhhcCCCCCccEEEeecccCcccc--------
Q 037733 1135 SLKRLDIYGCSNIRTLTLPAKLESLEVGNLPPSLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCENLKNL-------- 1206 (1450)
Q Consensus 1135 ~L~~L~l~~c~~l~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------- 1206 (1450)
+|+.+.+.. ++..+.-. .+. . .+++.+.+..+ ........+..+.+++.+.+..+......
T Consensus 114 ~L~~i~lp~--~~~~i~~~-~F~-----~--~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T 4h09_A 114 DLDDFEFPG--ATTEIGNY-IFY-----N--SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNK 182 (379)
T ss_dssp CCSEEECCT--TCCEECTT-TTT-----T--CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEET
T ss_pred CcccccCCC--cccccccc-ccc-----c--ceeeeeeccce-eeccccchhcccccccccccccccceeecccceeccc
Confidence 566666543 12211100 000 0 13444443322 12222334556667776666554332111
Q ss_pred ----CccccCCCCCcEEEEccCCCccchhcccCCCCCCCceecccCCCcccccccccCCCccceEeeccCCCccccCCCC
Q 037733 1207 ----PSGLHNLRQLREIRISLCSKLESIAERLDNNTSLEKIDTSDCENLKILPSGLHNLHQLREIILFRCGNLVSFPEGG 1282 (1450)
Q Consensus 1207 ----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 1282 (1450)
...+.....+..+.+.... .......+..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ +...-...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF 259 (379)
T 4h09_A 183 NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL 259 (379)
T ss_dssp TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence 1112233334444333221 1112233445556666665443 22222345566666666666544 332333345
Q ss_pred CCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccccccccCCCCCcccCCCCCcccccCCCCCCCcccceee
Q 037733 1283 LPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCDDLQLAGCDDGMVSFPPEPQDIRLGNALPLPASLTSLG 1362 (1450)
Q Consensus 1283 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 1362 (1450)
..+.+|+.+.+..+ +.......|.++++|+.+.+.++. +.+++. .+|..+.+|+.+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~--------------i~~I~~--------~aF~~c~~L~~i~ 316 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA--------------IETLEP--------RVFMDCVKLSSVT 316 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT--------------CCEECT--------TTTTTCTTCCEEE
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccc--------------cceehh--------hhhcCCCCCCEEE
Confidence 55666666666533 222223456666666666665441 222222 3455566666666
Q ss_pred ccccCCCccccccCCCCCCCCeeeccCC
Q 037733 1363 ISRFPNLERLSSSIVDLQNLTELIIEDC 1390 (1450)
Q Consensus 1363 l~~n~~~~~~~~~~~~l~~L~~L~l~~n 1390 (1450)
|.++ ....-..+|.+|++|+.+.+..+
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6543 22222345666666666666543
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=2.6e-05 Score=90.75 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=106.5
Q ss_pred cceecchhHHHHHHHHH-hcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc--ccc--cCCc---------------
Q 037733 188 TEVYGREIEKKQVIDLL-LRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR--VQD--HFDL--------------- 247 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~--~f~~--------------- 247 (1450)
.+++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.+++... ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999888888877 3321 123 89999999999999999877310 000 0000
Q ss_pred -----EEEEEeCCcc-CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccC
Q 037733 248 -----KTWTCVSDDF-DVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEA 321 (1450)
Q Consensus 248 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~ 321 (1450)
.+.+..+... ......++++..+..... ..... .+.. +.+++-++|+|++..-+......+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 1111111100 000012222222211110 00000 0000 234677999999988665666666665554
Q ss_pred CCCCcEEEEecCch-HHH-HhcCCCCceeCCCCCHHHHHHHHHhccCCCC-chh-HHHHHHHHHHhCCChHHHHHHH
Q 037733 322 GAQGSKIIVTTRNH-EVA-EIMGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELL-DEIGKKLVSKCGGLPLAAQTLG 394 (1450)
Q Consensus 322 ~~~gs~ilvTtr~~-~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~-~~~~~~i~~~~~G~PLai~~~~ 394 (1450)
...+..+|++|... .+. ........+++.+++.++..+.+...+.... ... ++.+..|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 44567788777653 221 1112236789999999999998877552111 122 4677889999999987665544
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.00 E-value=2.7e-05 Score=92.06 Aligned_cols=173 Identities=20% Similarity=0.178 Sum_probs=101.1
Q ss_pred cceecchhHH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc-cCHHHHH
Q 037733 188 TEVYGREIEK---KQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD-FDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 263 (1450)
.++||.+..+ ..+...+..+ ....+.|+|++|+||||+|+.+++. ....| +.++.. ..... .
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4588988877 6777777554 2467899999999999999999983 33222 222211 12221 1
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCchH--H-HH
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIV-TTRNHE--V-AE 339 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~--v-~~ 339 (1450)
++++... ......+++.+|++|+++.-.....+.+...+.. ....+|. ||.+.. + ..
T Consensus 92 r~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 1111111 0111246788999999987654445555554443 1233443 555432 1 11
Q ss_pred hcCCCCceeCCCCCHHHHHHHHHhccCC-------C-CchhHHHHHHHHHHhCCChHHHHHH
Q 037733 340 IMGTVPPHPLKELSDNDCLAIFAQHSLG-------P-RELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 340 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~-------~-~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
.......+.+++++.++...++.+.... . ....++..+.|++.++|.+-.+..+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1223357889999999999988765432 1 1134667888999999988655543
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.99 E-value=2.4e-05 Score=91.58 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=106.0
Q ss_pred cceecchhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeC----CccCHH
Q 037733 188 TEVYGREIEKKQ---VIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVS----DDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~~~ 260 (1450)
..+||++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++.. .... ..+.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccchh
Confidence 459999988776 444444332 123678999999999999999999843 2211 11222211 122333
Q ss_pred HHHHHHHHHhhcCC----------------------------CC-CCCCHHHHHHHHHHHh-----CCC----cEEEEEe
Q 037733 261 RLTKAILTSIVAGQ----------------------------NV-DNHDLNKLQVELNKQL-----SGK----KFLLVLD 302 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~----------------------------~~-~~~~~~~~~~~l~~~l-----~~k----r~LlVlD 302 (1450)
+...+.+....+.. .. .......+...+.... .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 33433333311100 00 0000112222222111 133 3599999
Q ss_pred CCCCCChhhHHhhhccccCCCCCcEEEEecCc-----------------hHHHHhcCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 303 DVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-----------------HEVAEIMGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 303 dv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
+++.........+...+...... .++++|.. +.+.+++ ..+.+.+++.++..+++...+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHH
Confidence 99776656666665555443333 34434321 2233332 347999999999999998665
Q ss_pred CCC-CchhHHHHHHHHHHhC-CChHHHHHH
Q 037733 366 LGP-RELLDEIGKKLVSKCG-GLPLAAQTL 393 (1450)
Q Consensus 366 ~~~-~~~~~~~~~~i~~~~~-G~PLai~~~ 393 (1450)
... .....+....|++.+. |.|-.+..+
T Consensus 273 ~~~~~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 273 EEEDVEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHTTCCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 321 1234567888899987 777655443
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.95 E-value=2.9e-05 Score=88.95 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=101.9
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|++..++.+..++..+. ...++.+.|++|+|||++|+.+++. ... ..+.++.+.. ... ..++.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEccccc-CHH-HHHHHH
Confidence 468999999999999997542 2357788899999999999999873 221 2334443331 222 222222
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-hhhHHhhhccccCCCCCcEEEEecCchH-----HHHhc
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-YNYWVEFSRPFEAGAQGSKIIVTTRNHE-----VAEIM 341 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~l~~~~~gs~ilvTtr~~~-----v~~~~ 341 (1450)
........ ..+++.+||+|+++.-. ......+...+.....+.++|+||.... +...+
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 21111100 12467899999998765 4455555544443334667888876542 22322
Q ss_pred CCCCceeCCCCCHHHHHHHHHh-------ccCC-CCchhH-HHHHHHHHHhCCChHHH
Q 037733 342 GTVPPHPLKELSDNDCLAIFAQ-------HSLG-PRELLD-EIGKKLVSKCGGLPLAA 390 (1450)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~-------~~~~-~~~~~~-~~~~~i~~~~~G~PLai 390 (1450)
..+++++++.++-.+++.. .+.. .....+ +....|++.++|.+-.+
T Consensus 158 ---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 ---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp ---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred ---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHH
Confidence 4689999998884333222 1110 111123 67778888888876543
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.91 E-value=9.1e-05 Score=81.85 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=96.8
Q ss_pred cceecchhHHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLR---DDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++++.+++.. ... .+....+.+.|+|++|+|||++|+++++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 3588999888777665432 110 01123456789999999999999999983 2222 233443321110
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC---------------hhhHHhhhccccC--CCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN---------------YNYWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~~~~~l~~--~~~ 324 (1450)
. .......+...+.......+.+|++|+++.-. ......+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 00111222233333334567899999996531 0111222222221 123
Q ss_pred CcEEEEecCchHHH-Hhc-C--C-CCceeCCCCCHHHHHHHHHhccCC--CCchhHHHHHHHHHHhCCChH-HHHHH
Q 037733 325 GSKIIVTTRNHEVA-EIM-G--T-VPPHPLKELSDNDCLAIFAQHSLG--PRELLDEIGKKLVSKCGGLPL-AAQTL 393 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~i~~~~~G~PL-ai~~~ 393 (1450)
+..||.||...... ..+ . . ...+.+...+.++-.+++..++.. ...........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 55666677554321 111 1 1 245788999999999988776522 111222234778888888754 44433
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=3e-05 Score=94.45 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=106.1
Q ss_pred cceecchhHHHHHHHHHhcCCC-----------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-----------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD 256 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 256 (1450)
.+++|++..++++.+++..... .+.+..+.+.|+|++|+||||+|+.+++.. .+ .++.+.++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 4699999999999999965110 001134688999999999999999999843 12 2334444443
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh---hhHHhhhccccCCCCCcEEEEecC
Q 037733 257 FDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY---NYWVEFSRPFEAGAQGSKIIVTTR 333 (1450)
Q Consensus 257 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~~~~~l~~~~~gs~ilvTtr 333 (1450)
.... +....+........... -...... .....+++.+||+|+++.... ..+..+...+.. .+..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chHH-HHHHHHHHHhccccHHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 3322 22222222111110000 0000000 001236788999999965322 122333333322 2334555554
Q ss_pred chH---HHHhcCCCCceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCCh-HHHHHHH
Q 037733 334 NHE---VAEIMGTVPPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLP-LAAQTLG 394 (1450)
Q Consensus 334 ~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~P-Lai~~~~ 394 (1450)
... +.........+.+.+++.++..+.+...+... ....++....|++.++|.+ -|+..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 321 22211223468999999999988886654211 1122346778899999954 4455443
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.86 E-value=0.00018 Score=79.78 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=91.6
Q ss_pred ceecchhHHHHHHH-------HHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 189 EVYGREIEKKQVID-------LLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.++|....+++++. .+... .......+.|+|++|+|||++|+++++. .... .+.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH-----
Confidence 46777777666665 33221 1234678899999999999999999983 2211 122222210
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhH-Hhhhcccc---CCCCCcEE
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE---------NYNYW-VEFSRPFE---AGAQGSKI 328 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~-~~~~~~l~---~~~~gs~i 328 (1450)
+.+. . .......+...+......+..+|+||+++.. ....+ ..+...+. ..+....|
T Consensus 101 --------~~g~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGF-S-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTC-C-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCC-c-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 0 0000112233333444567899999998431 01112 22222222 12234456
Q ss_pred EEecCchHHHHhc---CC-CCceeCCCCCH-HHHHHHHHhccCCCCchhHHHHHHHHHHhCC
Q 037733 329 IVTTRNHEVAEIM---GT-VPPHPLKELSD-NDCLAIFAQHSLGPRELLDEIGKKLVSKCGG 385 (1450)
Q Consensus 329 lvTtr~~~v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G 385 (1450)
|.||......... +. ...+.+.+++. ++...++.... . ...+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~---~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N---FKDKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C---SCHHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C---CCHHHHHHHHHHhcC
Confidence 7777776544331 11 24578899988 66666665532 1 124567788888887
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=8.2e-05 Score=85.61 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=103.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAI 266 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 266 (1450)
.+++|.+..++.+..++..+. ...+.++|++|+||||+|+.+++... ...+. .+.-++.+.......+ +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 347899888888888886542 22388999999999999999987321 11111 1122222221122111 111
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchH-HHH-hcCCC
Q 037733 267 LTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHE-VAE-IMGTV 344 (1450)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~-~~~~~ 344 (1450)
+..+..... ...+.+-++|+|+++.-.....+.+...+......+++|++|.... +.. .....
T Consensus 97 i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 111110000 0123467899999976555555666555544445667777665432 111 11223
Q ss_pred CceeCCCCCHHHHHHHHHhccCCC-CchhHHHHHHHHHHhCCChHHHH
Q 037733 345 PPHPLKELSDNDCLAIFAQHSLGP-RELLDEIGKKLVSKCGGLPLAAQ 391 (1450)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~ 391 (1450)
..+.+.+++.++..+.+...+... ....++..+.|++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 468899999999888776544211 12235677888999999886443
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.80 E-value=9.8e-05 Score=83.88 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=88.7
Q ss_pred ceecchhHHHHHHHHHhcCC---------CCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH
Q 037733 189 EVYGREIEKKQVIDLLLRDD---------LRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV 259 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1450)
.++|.+..++.+.+++.... .........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 37888888888776654210 001223456889999999999999988874321111111123333210
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC---------ChhhHHhhhccccCCCCCcEEEE
Q 037733 260 IRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE---------NYNYWVEFSRPFEAGAQGSKIIV 330 (1450)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilv 330 (1450)
.+... . ...........+... +.-+|++|+++.- .......+...+.....+..||.
T Consensus 109 ---------~l~~~-~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQ-Y-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCS-S-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhh-c-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 01000 0 011112222223222 3459999999732 33444555555555556778888
Q ss_pred ecCchH----------HHHhcCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 331 TTRNHE----------VAEIMGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 331 Ttr~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
||.... +...+ ...+.+.+++.++-.+++..++
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHH
Confidence 886532 22222 1568899999999988887654
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.79 E-value=0.00024 Score=80.79 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=103.4
Q ss_pred cceecchhHHHHHHHHHhcC----C--CCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----D--LRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++.+.+.+... . .......+-+.++|++|+|||++|+++++. ....| +.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 46899999999998877310 0 001123456889999999999999999983 32222 222221 1
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHHhhhccc---cCCCCCcE
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-----------NYWVEFSRPF---EAGAQGSK 327 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~~l---~~~~~gs~ 327 (1450)
+ ..... ......+...+...-..++.+|+||+++.-.. .....+...+ .....+..
T Consensus 87 l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 11100 01112222223333345678999999964211 0122222222 22334566
Q ss_pred EEEecCch-----HHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCCc-hhHHHHHHHHHHhCCC-hHHHHHHH
Q 037733 328 IIVTTRNH-----EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPRE-LLDEIGKKLVSKCGGL-PLAAQTLG 394 (1450)
Q Consensus 328 ilvTtr~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~i~~~~~G~-PLai~~~~ 394 (1450)
||.||... .+.+.+ ...+.+...+.++-.+++..++..... ........|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRF--ERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHccc--CeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66677653 222322 245788889999999999887644322 2345677888998884 54454443
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.79 E-value=2.8e-05 Score=76.65 Aligned_cols=114 Identities=17% Similarity=-0.003 Sum_probs=68.7
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
+++|+...+.++.+.+..... .. .-|.|+|.+|+|||++|+.+++... +.... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~-~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TD-IAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CC-SCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC---CC-CCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 578999999999988854321 11 2467999999999999999987421 11112 23 555433221
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc
Q 037733 269 SIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN 334 (1450)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~ 334 (1450)
.... ..+... +.-.|++|+++.-.......+...+.......+||.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2347899999877655566666655544556678877765
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.78 E-value=0.00047 Score=78.11 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred cceecchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----DL--RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.++.++.+.+.+... +. ......+.|.++|++|+|||++|+++++... ... .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 45889999888888776321 00 0112346788999999999999999998320 111 22233322110
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hhh----HHhhhcccc---CCCCCcE
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-------YNY----WVEFSRPFE---AGAQGSK 327 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~~~~~l~---~~~~gs~ 327 (1450)
.. .......+...+...-..++.+|++|+++... ... ...+...+. ....+..
T Consensus 85 ------------~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00 11122223333333334678899999996420 011 111222221 1234455
Q ss_pred EEEecCch-----HHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCCc-hhHHHHHHHHHHhCCC-hHHHHHHH
Q 037733 328 IIVTTRNH-----EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPRE-LLDEIGKKLVSKCGGL-PLAAQTLG 394 (1450)
Q Consensus 328 ilvTtr~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~i~~~~~G~-PLai~~~~ 394 (1450)
||.||... .+.+ .-...+.+...+.++-.+++..+...... ........|++.+.|. +-.|..+.
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66566543 2222 22346788888999888988876543222 2345678899999887 44455444
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=5.6e-06 Score=85.65 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=55.1
Q ss_pred hhhhhcCCCCCccEEEeecc-cCccc----cCccccCCCCCcEEEEccCCCccc----hhcccCCCCCCCceecccCCCc
Q 037733 1181 SVAERLDNNTSLERIRIYFC-ENLKN----LPSGLHNLRQLREIRISLCSKLES----IAERLDNNTSLEKIDTSDCENL 1251 (1450)
Q Consensus 1181 ~~~~~~~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~ 1251 (1450)
.+...+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 44556677788888888887 66532 233455567777777777776532 2333444556777777776654
Q ss_pred cc----ccccccCCCccceEee--ccCCC
Q 037733 1252 KI----LPSGLHNLHQLREIIL--FRCGN 1274 (1450)
Q Consensus 1252 ~~----~~~~l~~l~~L~~L~l--~~n~~ 1274 (1450)
.. +...+...++|++|+| ++|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 32 2334444455555555 44544
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=1.6e-05 Score=79.45 Aligned_cols=35 Identities=11% Similarity=0.329 Sum_probs=16.5
Q ss_pred CccEEEecCCCchhhhhhhcCCCCCccEEEeeccc
Q 037733 1167 SLKFLEVNSCSKLESVAERLDNNTSLERIRIYFCE 1201 (1450)
Q Consensus 1167 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1201 (1450)
.|++||+++|.++..--..+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45555555555443333333444555555555543
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=1.1e-05 Score=83.53 Aligned_cols=109 Identities=19% Similarity=0.139 Sum_probs=76.6
Q ss_pred CCccEEEecCC-Cchh----hhhhhcCCCCCccEEEeecccCccc----cCccccCCCCCcEEEEccCCCccc----hhc
Q 037733 1166 PSLKFLEVNSC-SKLE----SVAERLDNNTSLERIRIYFCENLKN----LPSGLHNLRQLREIRISLCSKLES----IAE 1232 (1450)
Q Consensus 1166 ~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~ 1232 (1450)
++|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 57888888888 6653 3445567778899999998887643 234455667899999999988743 455
Q ss_pred ccCCCCCCCceec--ccCCCccc----ccccccCCCccceEeeccCCC
Q 037733 1233 RLDNNTSLEKIDT--SDCENLKI----LPSGLHNLHQLREIILFRCGN 1274 (1450)
Q Consensus 1233 ~~~~~~~L~~L~L--~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~ 1274 (1450)
.+...++|++|+| ++|.+... +...+...++|++|++++|.+
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 6677788999999 77876543 233445556777777777754
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.76 E-value=2.1e-05 Score=81.88 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=37.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++||+.+++.+.+.+... ..+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999653 2346789999999999999999874
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.8e-05 Score=78.97 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=45.3
Q ss_pred CCccEEEeecccCccccCccccCCCCCcEEEEccCC-CccchhcccCC----CCCCCceecccCCCcc-cccccccCCCc
Q 037733 1190 TSLERIRIYFCENLKNLPSGLHNLRQLREIRISLCS-KLESIAERLDN----NTSLEKIDTSDCENLK-ILPSGLHNLHQ 1263 (1450)
Q Consensus 1190 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~----~~~L~~L~L~~n~~~~-~~~~~l~~l~~ 1263 (1450)
..|++||+++|.++..--..+.++++|++|+|++|. ++..--..+.. +++|++|+|++|..++ .--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554333445566666666666664 33222222332 2356666666665332 11123455666
Q ss_pred cceEeeccCCCc
Q 037733 1264 LREIILFRCGNL 1275 (1450)
Q Consensus 1264 L~~L~l~~n~~~ 1275 (1450)
|++|++++|+..
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 666666666543
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.74 E-value=0.00017 Score=83.04 Aligned_cols=184 Identities=16% Similarity=0.086 Sum_probs=100.8
Q ss_pred cceecchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----DL--RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++.+.+.+... .. ......+-|.++|++|+|||++|+++++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 45899999999988877321 00 01122345789999999999999999984 32222 222221 1
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh-----------hHHhhhcccc---CCCCCcE
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYN-----------YWVEFSRPFE---AGAQGSK 327 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~~~~~l~---~~~~gs~ 327 (1450)
+. ... .......+...+...-..++.+|+||+++..... ....+...+. ....+..
T Consensus 120 l~----~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 LV----SKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----SCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred Hh----hhh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 111 0111222223333333457889999999643210 0122222221 1234555
Q ss_pred EEEecCch-----HHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCCc-hhHHHHHHHHHHhCCC-hHHHHHHH
Q 037733 328 IIVTTRNH-----EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPRE-LLDEIGKKLVSKCGGL-PLAAQTLG 394 (1450)
Q Consensus 328 ilvTtr~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~i~~~~~G~-PLai~~~~ 394 (1450)
||.||... .+.+ .....+.+...+.++-.+++..+...... ........|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666543 2223 22356788889999988998876643221 2245677889999884 44454443
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.72 E-value=0.00016 Score=82.55 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=87.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSG 294 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1450)
...+.|+|++|+||||||+.+++.. ...-..++++++ ..+...+...+... ..... ....+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~~~----~~~~~- 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSA------DDFAQAMVEHLKKG------TINEF----RNMYK- 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEH------HHHHHHHHHHHHHT------CHHHH----HHHHH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEH------HHHHHHHHHHHHcC------cHHHH----HHHhc-
Confidence 4568899999999999999999842 211122445543 23344444443321 11222 22222
Q ss_pred CcEEEEEeCCCCCCh--hhHHhhhccccC-CCCCcEEEEecCch---------HHHHhcCCCCceeCCCCCHHHHHHHHH
Q 037733 295 KKFLLVLDDVWNENY--NYWVEFSRPFEA-GAQGSKIIVTTRNH---------EVAEIMGTVPPHPLKELSDNDCLAIFA 362 (1450)
Q Consensus 295 kr~LlVlDdv~~~~~--~~~~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1450)
+..+|++||+..... .....+...+.. ...|..||+||... .+...+.....+++.+ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999965432 122233322221 12456788877532 2333443335689999 9999999887
Q ss_pred hccCCC-CchhHHHHHHHHHHhCCChHH
Q 037733 363 QHSLGP-RELLDEIGKKLVSKCGGLPLA 389 (1450)
Q Consensus 363 ~~~~~~-~~~~~~~~~~i~~~~~G~PLa 389 (1450)
..+... ....++....|++.+ |..-.
T Consensus 177 ~~~~~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHhC-CCHHH
Confidence 765311 122356677888888 76643
No 201
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=6.9e-05 Score=77.20 Aligned_cols=122 Identities=18% Similarity=0.113 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhc
Q 037733 193 REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVA 272 (1450)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 272 (1450)
..+.++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcC
Confidence 44555555555543321 2346899999999999999999998432122222 23333 44455555444433
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHH--hhhccccC-CCCCcEEEEecCch
Q 037733 273 GQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWV--EFSRPFEA-GAQGSKIIVTTRNH 335 (1450)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~ilvTtr~~ 335 (1450)
... . .....+. +.-+|||||++....+.|. .+...+.. ...|..||+||...
T Consensus 89 ~~~---~---~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD---T---KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC---S---HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH---H---HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 221 1 1222221 4568999999743323343 22222221 12467888888753
No 202
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.64 E-value=0.00033 Score=80.79 Aligned_cols=187 Identities=12% Similarity=0.069 Sum_probs=100.8
Q ss_pred cceecchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----DL--RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++++.+.+... +. ......+.|.|+|++|+|||++|+++++. .... .+.+.++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 45899999999998877421 00 00123457889999999999999999873 2222 23344332111
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHHhhhccccC----CCCCc
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-----------YNYWVEFSRPFEA----GAQGS 326 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~~l~~----~~~gs 326 (1450)
. . ...........+...-..++.+|+||+++... ......+...+.. ...+.
T Consensus 156 -----------~-~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K-W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c-c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 0 00011111222222223567899999993210 0112223222221 12344
Q ss_pred EEEEecCchH-HHHh-c-CCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCC-ChHHHHHHHh
Q 037733 327 KIIVTTRNHE-VAEI-M-GTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGG-LPLAAQTLGG 395 (1450)
Q Consensus 327 ~ilvTtr~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G-~PLai~~~~~ 395 (1450)
.||.||.... +... . .....+.+...+.++..+++...+.... ....+....|++.+.| .+-.|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5565665431 1111 1 1223578888899888888876552211 1235677889999998 4555655543
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.62 E-value=0.00074 Score=75.99 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=98.4
Q ss_pred cceecchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++.+.+++..... .-....+.+.|+|++|+||||+|+.+++. .... .+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4589999999999887743100 00112457889999999999999999973 2222 22333322111
Q ss_pred HHHHHHHHhhcCCCCCCCCHHH-HHHHHHHHhCCCcEEEEEeCCCCCCh-----------hhHHhhhc---cccCC--CC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNK-LQVELNKQLSGKKFLLVLDDVWNENY-----------NYWVEFSR---PFEAG--AQ 324 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~~~~---~l~~~--~~ 324 (1450)
. ....... ....+......++.+|++|+++.... .....+.. .++.. +.
T Consensus 93 -----------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -----------K---YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------S---SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------c---ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 0111122 22222223345678999999954210 11111211 11111 13
Q ss_pred CcEEEEecCch-----HHHHhcCCCCceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChH-HHHHH
Q 037733 325 GSKIIVTTRNH-----EVAEIMGTVPPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPL-AAQTL 393 (1450)
Q Consensus 325 gs~ilvTtr~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PL-ai~~~ 393 (1450)
+..||.||... .+.+.+. ..+.+...+.++..+++...+.... ....+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFT--KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCC--EEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCC--eEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45566677653 2333322 4567777788887777766542211 1234567788999999875 44444
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.60 E-value=0.00078 Score=80.01 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=101.3
Q ss_pred cceecchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----DL--RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++.+.+.+... .. ......+.|.++|++|+|||++|+++++.. . ..-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~----~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--N----NSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--C----SSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--C----CCCEEEEeHHH----
Confidence 45899999999988877311 00 011234678899999999999999999832 1 11233333221
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------h----hHHhhhccccC---CCCCcE
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-------N----YWVEFSRPFEA---GAQGSK 327 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~~~~~l~~---~~~gs~ 327 (1450)
+. ....+. .......+. ...-..++.+|+||+++.... . ....+...+.. ...+..
T Consensus 204 l~----~~~~g~---~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 LV----SKWLGE---SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HH----hhhcch---HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 112222222 222235678999999975310 1 11223222222 234566
Q ss_pred EEEecCchHHH-Hh-c-CCCCceeCCCCCHHHHHHHHHhccCCCCc-hhHHHHHHHHHHhCCC-hHHHHHHH
Q 037733 328 IIVTTRNHEVA-EI-M-GTVPPHPLKELSDNDCLAIFAQHSLGPRE-LLDEIGKKLVSKCGGL-PLAAQTLG 394 (1450)
Q Consensus 328 ilvTtr~~~v~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~i~~~~~G~-PLai~~~~ 394 (1450)
||.||...... .. . .....+.+...+.++-..+|..+...... ........|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77677653211 11 1 12245778888888888888877643222 2345677889999884 44454443
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=0.00033 Score=78.74 Aligned_cols=180 Identities=15% Similarity=0.084 Sum_probs=95.3
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.+++|.+..++++.+++...-. -+-...+.+.|+|++|+|||++|+++++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4589999988888887743100 01123457899999999999999999983 2222 22222 22
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------------hhhHHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN--------------YNYWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~~~~~l~~--~~~ 324 (1450)
.+. ....+.. . ..+...+.......+.+|++|+++... ......+...+.. ...
T Consensus 84 ~l~----~~~~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELL----TMWFGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----hhhcCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 2222211 1 112233333334567999999996310 0112223322221 223
Q ss_pred CcEEEEecCchHHH-Hh-cC---CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCChH
Q 037733 325 GSKIIVTTRNHEVA-EI-MG---TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPL 388 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PL 388 (1450)
+..||.||...+.. .. .. -...+.+...+.++-.+++..+.....-........+++.+.|.|=
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg 222 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCH
Confidence 55677777654321 11 11 1245788899998888888665432110000112345556666654
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=9.6e-05 Score=77.80 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCC
Q 037733 195 IEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQ 274 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 274 (1450)
..++.+.+++..... ......+.|+|++|+||||||+++++. .......++|+.+. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 345556666654321 112267889999999999999999984 33333456666542 334443332211
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHh--hhc-cccCC-CCCcEEEEecCc
Q 037733 275 NVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVE--FSR-PFEAG-AQGSKIIVTTRN 334 (1450)
Q Consensus 275 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~-~l~~~-~~gs~ilvTtr~ 334 (1450)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112222333322 2399999997653333322 221 11111 235578888875
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.0003 Score=78.42 Aligned_cols=149 Identities=7% Similarity=-0.024 Sum_probs=91.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc-ccccCCcEEEEEeCC-ccCHHHHHHHHHHH
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR-VQDHFDLKTWTCVSD-DFDVIRLTKAILTS 269 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 269 (1450)
|-++.++.+...+..+ +.....++|++|+||||+|+.+++... .........++..++ ...+.+ .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455566777777543 257889999999999999999987311 111122334444332 222222 2233333
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-hHHHHhcCCCCcee
Q 037733 270 IVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRN-HEVAEIMGTVPPHP 348 (1450)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~~~~~~~~ 348 (1450)
+.... ..+++-++|+|+++.-.....+.+...+......+.+|++|.. ..+...+... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 32111 1245778999999887767777777777655567777766544 3343334344 899
Q ss_pred CCCCCHHHHHHHHHhcc
Q 037733 349 LKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 349 l~~L~~~~~~~lf~~~~ 365 (1450)
+.++++++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999998887765
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.49 E-value=0.00068 Score=79.39 Aligned_cols=186 Identities=13% Similarity=0.106 Sum_probs=98.7
Q ss_pred cceecchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++.+.+++..... ......+-|.|+|++|+|||++|+++++. .... .+.+.++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 4699999999999888732100 00112357889999999999999999873 2222 223333221110
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-----------hhhHHhhhcccc---C-CCCCc
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-----------YNYWVEFSRPFE---A-GAQGS 326 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~~~~l~---~-~~~gs 326 (1450)
. .......+...+...-..++.+|+||+++... ......+...+. . .....
T Consensus 188 ~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00111222222222223456799999995320 011112222111 1 12234
Q ss_pred EEEEecCchH-HHHh-cCCC-CceeCCCCCHHHHHHHHHhccCCCC-chhHHHHHHHHHHhCCChH-HHHHHH
Q 037733 327 KIIVTTRNHE-VAEI-MGTV-PPHPLKELSDNDCLAIFAQHSLGPR-ELLDEIGKKLVSKCGGLPL-AAQTLG 394 (1450)
Q Consensus 327 ~ilvTtr~~~-v~~~-~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~i~~~~~G~PL-ai~~~~ 394 (1450)
.||.||.... +... .... ..+.+...+.++..+++...+.... ....+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5555665422 1111 1122 3578889999999998877653322 2335577889999988654 554443
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.45 E-value=0.00043 Score=82.85 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=78.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccC------Cc-EEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF------DL-KTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~-~~wv~~~~~~~~~ 260 (1450)
.++|||+.++++++..|.... ..-+.++|++|+|||++|+.+++. +...+ +. .+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 459999999999999996532 234579999999999999999873 21111 11 1222222
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHh
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEI 340 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~ 340 (1450)
....+. -..... ..+...-..++.+|++|. . .+....+...+.. ...++|.+|........
T Consensus 246 -------~~~~g~---~e~~~~---~~~~~~~~~~~~iLfiD~--~--~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 -------TKYRGE---FEDRLK---KVMDEIRQAGNIILFIDA--A--IDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred -------ccccch---HHHHHH---HHHHHHHhcCCeEEEEeC--c--hhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000000 011122 222333345678999991 1 1222334333332 24566666654432111
Q ss_pred c-------CCCCceeCCCCCHHHHHHHHHhcc
Q 037733 341 M-------GTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 341 ~-------~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
+ .....+.+.+.+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 112358999999999999998654
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00011 Score=79.59 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=62.2
Q ss_pred ccccccEEEecCCCCCcC---CcCccCCCccceeeccCCCcccccccccccC--CccEEecCCCCchhHhh-------hh
Q 037733 594 KLQRLRVFSLCGYHISKL---PDSIGDLRYLRYLNLSGTGIRTLPESVNKLY--NLHTLLLNDCHQLKKLC-------AD 661 (1450)
Q Consensus 594 ~~~~Lr~L~L~~~~i~~l---p~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~--~L~~L~L~~c~~l~~lp-------~~ 661 (1450)
.++.|+.|+|++|.|..+ |..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|++|..-..+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 789999999999998875 46677899999999999999987 4466666 99999999965443333 23
Q ss_pred hhhhcccCcccc
Q 037733 662 MEDLIRLHHLKN 673 (1450)
Q Consensus 662 i~~L~~L~~L~l 673 (1450)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 677888888763
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=4.1e-05 Score=82.90 Aligned_cols=81 Identities=10% Similarity=0.060 Sum_probs=47.8
Q ss_pred CCCCCccEEEeecccCcc--ccCccccCCCCCcEEEEccCCCccch-hcccCCCCCCCceecccCCCccccc-------c
Q 037733 1187 DNNTSLERIRIYFCENLK--NLPSGLHNLRQLREIRISLCSKLESI-AERLDNNTSLEKIDTSDCENLKILP-------S 1256 (1450)
Q Consensus 1187 ~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~-------~ 1256 (1450)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+.- ...+..+ +|++|+|++|++.+.+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456777777777777766 33455556777777777777766431 1122233 66667777766654433 1
Q ss_pred cccCCCccceEe
Q 037733 1257 GLHNLHQLREII 1268 (1450)
Q Consensus 1257 ~l~~l~~L~~L~ 1268 (1450)
.+..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244555555554
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.38 E-value=0.00011 Score=72.20 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=62.7
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
..++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++.. ....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~----- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM----- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC-----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh-----
Confidence 3588999999888888754211 112367999999999999999987422 2222222210 0000
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCC-CCCcEEEEecCc
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAG-AQGSKIIVTTRN 334 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~ilvTtr~ 334 (1450)
...+.... +.-.|+||+++.........+...+... ..+.+||.||..
T Consensus 67 -----------------~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 -----------------PMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------------HHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------------hhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 01111111 2347899999877655555555444332 345778887764
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.36 E-value=0.00039 Score=90.33 Aligned_cols=173 Identities=15% Similarity=0.166 Sum_probs=87.3
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cccC-C-cEEEEEeCCccCHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV---QDHF-D-LKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f-~-~~~wv~~~~~~~~~~~ 262 (1450)
.++|||+++++++++.|.... ..-+.++|++|+||||+|+.+++...- .... + .++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999996542 234679999999999999999973211 0011 1 223333221100
Q ss_pred HHHHHHHhhcCCCCCCCCHHH-HHHHHHHHhC-CCcEEEEEeCCCCCCh-----hhHH---hhhccccCCCCCcEEEEec
Q 037733 263 TKAILTSIVAGQNVDNHDLNK-LQVELNKQLS-GKKFLLVLDDVWNENY-----NYWV---EFSRPFEAGAQGSKIIVTT 332 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~~-----~~~~---~~~~~l~~~~~gs~ilvTt 332 (1450)
... ...+... +...+...-. +++.+|++|++..-.. ..++ .+...+. . .+..+|.+|
T Consensus 240 ----------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~-~~i~~I~at 306 (854)
T 1qvr_A 240 ----------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-R-GELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-T-TCCCEEEEE
T ss_pred ----------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-C-CCeEEEEec
Confidence 000 0112222 2222333223 4689999999965320 0121 1222222 1 234566555
Q ss_pred CchHHHH-----hc-CCCCceeCCCCCHHHHHHHHHhccC-----CCCchhHHHHHHHHHHh
Q 037733 333 RNHEVAE-----IM-GTVPPHPLKELSDNDCLAIFAQHSL-----GPRELLDEIGKKLVSKC 383 (1450)
Q Consensus 333 r~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf~~~~~-----~~~~~~~~~~~~i~~~~ 383 (1450)
....... .+ .....+.+++++.++..+++..... ......++....+++.+
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 5433211 11 1224588999999999988864321 11112344555555555
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.33 E-value=0.00047 Score=82.26 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=100.0
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
..++|.+..++++.+++..... .+....+-|.|+|++|+|||++|+++++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 4589999999999888753200 00122346889999999999999999873 3222 2233321
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC--------C---hhhHHhhhccccC--CCCCcE
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE--------N---YNYWVEFSRPFEA--GAQGSK 327 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~~~~~l~~--~~~gs~ 327 (1450)
.+. ..+ ...........+.....+++.+|+||+++.- . ......+...+.. ...+.+
T Consensus 273 ~l~----~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 EIM----SKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp HHH----TSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred Hhh----hhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111 110 1111222333444444567889999999321 0 0112223332221 223455
Q ss_pred EEEecCchH-HHHhc----CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC-hHHHHHH
Q 037733 328 IIVTTRNHE-VAEIM----GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL-PLAAQTL 393 (1450)
Q Consensus 328 ilvTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~ 393 (1450)
||.||.... +...+ .....+.+...+.++-.+++..++..-.........++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHH
Confidence 666666542 22112 122358899999999999998776432211111235567777774 4444433
No 215
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.33 E-value=0.001 Score=75.97 Aligned_cols=176 Identities=20% Similarity=0.182 Sum_probs=94.0
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
..++|.+..++.+...+..... .+.....+.++|++|+||||||+.+++. ....| .. .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~-~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HV-TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EE-EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EE-EechHh---------
Confidence 4578988877777766643210 1123457899999999999999999983 22111 11 111100
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCC--------C----------CCcEEE
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAG--------A----------QGSKII 329 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~--------~----------~gs~il 329 (1450)
....++...+ ..+. ++-++++|++..-.....+.+...+... + ....++
T Consensus 88 -----------~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0011111111 1222 3457778888554322233332111111 0 011222
Q ss_pred -EecCchHHHHhc-CC-CCceeCCCCCHHHHHHHHHhccCC-CCchhHHHHHHHHHHhCCChHHHHHH
Q 037733 330 -VTTRNHEVAEIM-GT-VPPHPLKELSDNDCLAIFAQHSLG-PRELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 330 -vTtr~~~v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
.|++...+...+ .. .-.+.+++.+.++-.+++.+.+.. ......+.+..|++.++|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 345443322111 11 124789999999999999876521 11234677899999999999755443
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.24 E-value=0.00073 Score=74.51 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=33.6
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478999999888877754211 1235779999999999999999974
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.22 E-value=0.0012 Score=74.77 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=72.9
Q ss_pred ceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKA 265 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 265 (1450)
.++|.+..++.+...+..... ........+.++|++|+||||+|+.+++. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 378999998888888865311 01122457899999999999999999973 22211234455554332211 1111
Q ss_pred HHHHhhcCCCC-CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 037733 266 ILTSIVAGQNV-DNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVTTR 333 (1450)
Q Consensus 266 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtr 333 (1450)
+. +..... .......+...+. ....-+++||+++.........+...+.... ..+.||.||.
T Consensus 95 l~---g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp HH---CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred hc---CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 11 111000 0000012222222 1334699999997766555555554443211 2344777776
Q ss_pred c
Q 037733 334 N 334 (1450)
Q Consensus 334 ~ 334 (1450)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.19 E-value=0.00089 Score=80.04 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=60.0
Q ss_pred EEEEeCCCCCChhhHHhhhccccCCCCCcEEE-Ee---------cC----c----hHHHHhcCCCCceeCCCCCHHHHHH
Q 037733 298 LLVLDDVWNENYNYWVEFSRPFEAGAQGSKII-VT---------TR----N----HEVAEIMGTVPPHPLKELSDNDCLA 359 (1450)
Q Consensus 298 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vT---------tr----~----~~v~~~~~~~~~~~l~~L~~~~~~~ 359 (1450)
++++|++..-+.+.++.+...+...... .+| .| |. . ..+..++ ..+.+.+++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 8999999887777788887776654444 334 44 32 1 1133333 447999999999999
Q ss_pred HHHhccCC-CCchhHHHHHHHHHHh-CCChHHHHHH
Q 037733 360 IFAQHSLG-PRELLDEIGKKLVSKC-GGLPLAAQTL 393 (1450)
Q Consensus 360 lf~~~~~~-~~~~~~~~~~~i~~~~-~G~PLai~~~ 393 (1450)
++...+.. .....++....|++.+ +|.|-.+..+
T Consensus 374 iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 99766421 1113356677888888 8888755544
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00018 Score=70.78 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+.|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.17 E-value=0.0022 Score=72.62 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=37.1
Q ss_pred cceecchhHHHHHHHHHhcCCCC--------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLR--------NDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998887541000 0012346779999999999999999873
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.17 E-value=0.0011 Score=74.18 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=36.6
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3589999999999888865321 1234679999999999999999873
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.0013 Score=72.16 Aligned_cols=183 Identities=14% Similarity=0.059 Sum_probs=90.4
Q ss_pred cceecchhHHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLL---RDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.+..++++.+.+. .... .+....+-+.|+|++|+||||+|+.+++. .... .+.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 458999888777665442 2110 00112334789999999999999999973 2222 23333221100
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------h----hhHHhhhccccC--CCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------Y----NYWVEFSRPFEA--GAQG 325 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~~~~~l~~--~~~g 325 (1450)
. . .......+...+.......+.++++|+++.-. . .....+...+.. ...+
T Consensus 84 -----------~-~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -----------M-F-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------S-C-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------H-h-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0 0 11122333344444445567899999983210 0 111122222211 1234
Q ss_pred cEEEEecCchH-HHHhc-C---CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCC-ChHHHH
Q 037733 326 SKIIVTTRNHE-VAEIM-G---TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGG-LPLAAQ 391 (1450)
Q Consensus 326 s~ilvTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~ 391 (1450)
..||.||...+ +.... . -...+.+...+.++-.+++..+.....-..+.....+++.+.| .+--|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence 56666776543 21111 1 1235677777877777777655422110001113446666777 554443
No 223
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00087 Score=76.25 Aligned_cols=179 Identities=16% Similarity=0.077 Sum_probs=95.2
Q ss_pred cceecchhHHHHHHHHHhcC----CC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----DL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|-++.+++|.+.+.-+ +. .+-...+-|.++|++|+|||.||+++++. ....| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 45788888888877665321 00 01223456889999999999999999983 33332 3333332111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------hh--h----HHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN--------YN--Y----WVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~--~----~~~~~~~l~~--~~~ 324 (1450)
.. -......+...+...-...+++|++|+++... .. . ...+...+.. ...
T Consensus 221 -------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 -------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 01112222233333334678999999996521 00 1 1122222222 233
Q ss_pred CcEEEEecCchHH-----HHhcCCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 325 GSKIIVTTRNHEV-----AEIMGTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 325 gs~ilvTtr~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
+..||.||...+. .+.-.-...+.+..-+.++-.++|..+.-.-.-...--..+|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence 4456667755422 11112346788888888888888876653211000011456777787753
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.12 E-value=0.0028 Score=81.55 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=86.1
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccc---cc-cCCcEEEE-EeCCccCHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRV---QD-HFDLKTWT-CVSDDFDVIRL 262 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv-~~~~~~~~~~~ 262 (1450)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+++...- .. .....+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 458999999999999996542 245679999999999999999873210 00 12333331 1110 0
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHH-HHHHhCCCcEEEEEeCCCCC--------ChhhHHhhhccccCCCCCcEEEEecC
Q 037733 263 TKAILTSIVAGQNVDNHDLNKLQVE-LNKQLSGKKFLLVLDDVWNE--------NYNYWVEFSRPFEAGAQGSKIIVTTR 333 (1450)
Q Consensus 263 ~~~i~~~l~~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~ilvTtr 333 (1450)
+ .... .....+..... +...-..++.+|++|+++.. ...........+.. ..+.++|.+|.
T Consensus 254 -------~-~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------L-AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT 323 (758)
T ss_dssp ---------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred -------h-cccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence 0 0011 12233333333 33333446789999999653 11222222223322 23456666666
Q ss_pred chHHHHhcC-------CCCceeCCCCCHHHHHHHHHhc
Q 037733 334 NHEVAEIMG-------TVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 334 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
......... ....+.+.+.+.++..+++...
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 544322111 1135788999999988888653
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.02 E-value=7.6e-05 Score=82.69 Aligned_cols=51 Identities=27% Similarity=0.293 Sum_probs=34.6
Q ss_pred cceecchhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLR------NDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+++|.+..++++.+.+..-..+ +....+-+.|+|++|+|||++|+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45899998888777765410000 0011223679999999999999999983
No 226
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00066 Score=78.26 Aligned_cols=178 Identities=14% Similarity=0.083 Sum_probs=93.6
Q ss_pred cceecchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLR----DDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|-++.+++|.+.+.- .+. -+-...+-|.++|++|+|||+||+++++. ....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 3578888888888775421 000 01234567889999999999999999983 33332 3333322111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC--------h--h----hHHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN--------Y--N----YWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--~----~~~~~~~~l~~--~~~ 324 (1450)
.. -......+...+...-...+++|++|+++... . . ....+...+.. ...
T Consensus 282 -------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KY-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------cc-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 01111222233333334678999999996421 0 0 01112222222 223
Q ss_pred CcEEEEecCchHHH-Hhc---C-CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC
Q 037733 325 GSKIIVTTRNHEVA-EIM---G-TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~ 386 (1450)
+..||.||...+.. ..+ + -...+.+...+.++-.++|..+...-.-...--...|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCC
Confidence 44556677543221 111 2 23567888888888888887665321110001135567778775
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.96 E-value=0.0022 Score=82.20 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=79.8
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccc---cccc-CCcEEEEEeCCccCHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDR---VQDH-FDLKTWTCVSDDFDVIRLT 263 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-f~~~~wv~~~~~~~~~~~~ 263 (1450)
.++|||+++++++...|.... ..-+.++|++|+|||++|+.+++... +... .+..+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc--------
Confidence 459999999999999996542 23367999999999999999987320 0000 01111 11111
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHHHhc--
Q 037733 264 KAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVAEIM-- 341 (1450)
Q Consensus 264 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~-- 341 (1450)
.....+. -... +...+......++.+|++|.- . +....+...+. ....++|.||.........
T Consensus 245 ---g~~~~G~---~e~~---l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ---GTKYRGE---FEDR---LKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ---cccccch---HHHH---HHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000000 0111 222333334467889999921 1 22223333333 2345667666554321110
Q ss_pred -----CCCCceeCCCCCHHHHHHHHHhcc
Q 037733 342 -----GTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 342 -----~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
.....+.+...+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112458999999999999998654
No 228
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0012 Score=76.69 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=94.2
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|-++.+++|.+.+.-.-. .+-...+-|.++|++|+|||++|+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 4678998888887776632100 01233567889999999999999999983 33222 2333332111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------hh----hHHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------YN----YWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~~~~~l~~--~~~ 324 (1450)
.. .......+...+...-...+++|++|+++... .. ....+...+.. ...
T Consensus 254 -------------k~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------cc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 01111222233333334678999999996421 00 11223222221 233
Q ss_pred CcEEEEecCchHHHH-hc-C---CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 325 GSKIIVTTRNHEVAE-IM-G---TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 325 gs~ilvTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
+..||.||...+... .+ . -...+.+..-+.++-.++|..+...-.....--...|++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCC
Confidence 556777776543321 11 1 123577877787777788876542211000001355677777753
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.84 E-value=0.0021 Score=75.81 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=93.4
Q ss_pred cceecchhHHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.++.++++.+....-.. .+....+-|.|+|++|+|||+||+++++. .... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH--
Confidence 4589998877776665432100 01111234789999999999999999983 2222 223333221110
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh--------------hhHHhhhccccC--CCCC
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY--------------NYWVEFSRPFEA--GAQG 325 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~~~~~l~~--~~~g 325 (1450)
. ...........+.......+.+|+||+++.-.. .....+...+.. ...+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 000112233334444456789999999954210 112223222211 1235
Q ss_pred cEEEEecCchHHHH-h-cC--C-CCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 326 SKIIVTTRNHEVAE-I-MG--T-VPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 326 s~ilvTtr~~~v~~-~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
..||.||...+... . .. . ...+.+...+.++-.+++..++....-........|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 56777776654321 1 11 1 23678888888777777766543211000011344778888876
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.82 E-value=0.0029 Score=67.32 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=52.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh-----------hcCCCCCCCCHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI-----------VAGQNVDNHDLNK 283 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----------~~~~~~~~~~~~~ 283 (1450)
..++.|+|.+|+||||||..++. ..-..++|+.....++..++.. +.... .........+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999987 1124578888766555554433 22221 1111111222233
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCC
Q 037733 284 LQVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 284 ~~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
....++..++.+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44455555544577999999854
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.79 E-value=0.003 Score=81.05 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=86.8
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 4589999999888888864321 01122347899999999999999999873 2121223445554432210
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccC-----------CCCCcEEEEecC
Q 037733 265 AILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEA-----------GAQGSKIIVTTR 333 (1450)
Q Consensus 265 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~-----------~~~gs~ilvTtr 333 (1450)
.. .....+...++. ...-+|+||++..........+...+.. .....+||+||.
T Consensus 564 ---------~~---~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ---------HS---TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------CC---CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------cc---cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 001111112221 2334899999987766666655544432 123568888887
Q ss_pred c-----hH----HHHhc-----CC-CCceeCCCCCHHHHHHHHHhc
Q 037733 334 N-----HE----VAEIM-----GT-VPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 334 ~-----~~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
. .. +...+ .. ...+.+.++++++-.+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 3 11 11111 11 146788888888877776553
No 232
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0023 Score=74.04 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=37.3
Q ss_pred cceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++.|-++.+++|.+.+.-.-. .+-...+-|.++|++|+|||++|+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5688999888888776632100 01233566889999999999999999983
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.68 E-value=0.0028 Score=72.42 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=82.6
Q ss_pred ceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHH
Q 037733 189 EVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
.++|+++.++.+...+..+ .-+.++|++|+|||++|+.+++. ....| ..+.+.......++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g---- 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIG---- 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHE----
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCC----
Confidence 4889999999988888654 24789999999999999999873 32222 2233332323222211
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCCCChhhHHhhhccccC-----------CCCCcEEEEecCc
Q 037733 269 SIVAGQNVDNHDLNKLQVELNKQLSG---KKFLLVLDDVWNENYNYWVEFSRPFEA-----------GAQGSKIIVTTRN 334 (1450)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~~~~~l~~-----------~~~gs~ilvTtr~ 334 (1450)
....... .... .... ...++++|+++.........+...+.. ......|+.|+..
T Consensus 91 ~~~~~~~--~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 91 TMIYNQH--KGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp EEEEETT--TTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ceeecCC--CCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 1100000 0000 0000 125899999977655444444333221 1234556656652
Q ss_pred hH------H-HHhcCCCC-ceeCCCCCHHHHHHHHHhccC
Q 037733 335 HE------V-AEIMGTVP-PHPLKELSDNDCLAIFAQHSL 366 (1450)
Q Consensus 335 ~~------v-~~~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 366 (1450)
.+ + ........ .+.+...+.++-.+++...+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1 11111223 478899999998888877653
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.67 E-value=0.004 Score=75.76 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=79.5
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
.+++|-+...+.+.+.+.-..........++.++|++|+||||||+.++.. ....| ..+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888877777655443211111124568999999999999999999873 22222 2222332222111111100
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChh----hHHhhhccccCCC---------------CCcEE
Q 037733 268 TSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYN----YWVEFSRPFEAGA---------------QGSKI 328 (1450)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~l~~~~---------------~gs~i 328 (1450)
..++ .........+... ....-++++|+++..... ....+...+.... ....|
T Consensus 156 ~~ig-------~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 156 TYVG-------AMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHhc-------cCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 0000 0011111222222 223348889999764322 1233333332110 34466
Q ss_pred EEecCch-----HHHHhcCCCCceeCCCCCHHHHHHHHHhcc
Q 037733 329 IVTTRNH-----EVAEIMGTVPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 329 lvTtr~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
|.||... .+.+++ ..+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 7676653 233444 367899999998888887653
No 235
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.001 Score=75.76 Aligned_cols=178 Identities=15% Similarity=0.080 Sum_probs=91.1
Q ss_pred cceecchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLR----DDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|-++.+++|.+.+.- .+. .+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 4577888888887776532 100 01233567889999999999999999983 33222 2233221110
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC----------h----hhHHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN----------Y----NYWVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~~~~~l~~--~~~ 324 (1450)
.. -......+...+...-...+++|++|+++... . .....+...+.. ...
T Consensus 255 -------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 -------------KY-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -------------SS-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -------------cc-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 00 01111122222233334568999999986420 0 011122222221 223
Q ss_pred CcEEEEecCchHHH-HhcC---C-CCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCC
Q 037733 325 GSKIIVTTRNHEVA-EIMG---T-VPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~ 386 (1450)
+..||.||...+.. ..+- . ...+.+..-+.++-.++|..+.-.-.-...-....|++.+.|+
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 44566677654332 1111 1 1346777778887788887665321100001135566777775
No 236
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.00052 Score=79.48 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=90.7
Q ss_pred cceecchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLR----DDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|-++.+++|.+.+.. ++. .+-...+-|.++|++|+|||.+|+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh--
Confidence 4688999888888776432 110 02234567889999999999999999983 33222 2333322111
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC------Ch----hh----HHhhhccccC--CCC
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE------NY----NY----WVEFSRPFEA--GAQ 324 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~~----~~----~~~~~~~l~~--~~~ 324 (1450)
. . .......+...+...-...+++|++|+++.. .. .. ...+...+.. ...
T Consensus 254 ------------~-~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 ------------M-Y-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ------------S-C-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------------c-c-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 0 0 0011111222222222346899999998431 00 01 1122222222 123
Q ss_pred CcEEEEecCchHHH-Hhc-C---CCCceeCCCCCHHHHHHHHHhccCC--CCchhHHHHHHHHHHhCCC
Q 037733 325 GSKIIVTTRNHEVA-EIM-G---TVPPHPLKELSDNDCLAIFAQHSLG--PRELLDEIGKKLVSKCGGL 386 (1450)
Q Consensus 325 gs~ilvTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~i~~~~~G~ 386 (1450)
+..||.||...+.. ..+ . -...+.+..-+.++-.++|..+.-. ..... -...|++.+.|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 44566677654332 111 1 1245788888888877888655421 11100 135567777774
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.54 E-value=0.0049 Score=77.14 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=97.5
Q ss_pred cceecchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLR----DDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.++.|-++.+++|.+++.- .+. -+-..++-|.++|++|+|||+||+++++. ...+| +.|..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 3577888888777776532 111 02234577899999999999999999984 33332 333321
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCCh-------hh----HHhhhccccC--CCCCcE
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENY-------NY----WVEFSRPFEA--GAQGSK 327 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~----~~~~~~~l~~--~~~gs~ 327 (1450)
++ .. . . .......+...+....+..+.+|+||+++.--. .. ...+...+.. ...+..
T Consensus 273 ~l----~s----k-~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 EI----MS----K-L-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp HH----HS----S-C-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred Hh----hc----c-c-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 11 0 0 112233344445555567899999999954210 00 1112222211 122344
Q ss_pred EEEecCchH-HHHhcC----CCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 328 IIVTTRNHE-VAEIMG----TVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 328 ilvTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
||.||...+ +-..+. -...+++...+.++-.++|..+..............|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 555665432 222221 124578888888888888887653321111112456778888764
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.51 E-value=0.0018 Score=72.48 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 193 REIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+...++.+.+++.... ......+.|+|++|+|||+||+++++.
T Consensus 133 ~~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444555666665431 112357889999999999999999984
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.0059 Score=67.97 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++.+.++|++|+|||+||+++++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.002 Score=70.51 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=45.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEe--CCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCV--SDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
.+++.|+|++|+||||||.+++.. .-..++|++. .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 367789999999999999999873 1123566666 322110 0134555555566666
Q ss_pred CCCcEEEEEeCCCC
Q 037733 293 SGKKFLLVLDDVWN 306 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~ 306 (1450)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5556 999999954
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.08 E-value=0.04 Score=65.55 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.5
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
++|+++.++.+...+..+ .-|.++|++|+|||+||+.+++.
T Consensus 24 ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 789999999888888664 25789999999999999999984
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.01 E-value=0.012 Score=76.37 Aligned_cols=137 Identities=15% Similarity=0.222 Sum_probs=72.3
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHH
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
..++|.+..++.+...+..... ..+.....+.|+|++|+|||++|+.+++.. ...-...+.+.++.-... ...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~-~~~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEK-HAV- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSS-GGG-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccch-hHH-
Confidence 3579999999988888754321 011224578899999999999999998732 111112344444432211 000
Q ss_pred HHHHHhhcCCC--CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEe
Q 037733 265 AILTSIVAGQN--VDNHDLNKLQVELNKQLSGKKFLLVLDDVWNENYNYWVEFSRPFEAGA-----------QGSKIIVT 331 (1450)
Q Consensus 265 ~i~~~l~~~~~--~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvT 331 (1450)
..+.+... ........+...++. ...-+|+||++..........+...+..+. .+..||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 01100000 000000112222222 234689999998776666666655554321 24457888
Q ss_pred cCc
Q 037733 332 TRN 334 (1450)
Q Consensus 332 tr~ 334 (1450)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 875
No 243
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.00 E-value=0.024 Score=67.33 Aligned_cols=175 Identities=14% Similarity=0.083 Sum_probs=88.9
Q ss_pred cceecchhHHHHHHHHHh---cCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHH
Q 037733 188 TEVYGREIEKKQVIDLLL---RDDLR---NDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIR 261 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 261 (1450)
.+++|.++.+.++.+... ....- +-.-.+-+.|+|++|+||||||++++... .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH---
Confidence 458898877666655442 21100 00112238899999999999999999842 21 233343322110
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC----CCcEEEEEeCCCCCC----------hhhH----HhhhccccCC-
Q 037733 262 LTKAILTSIVAGQNVDNHDLNKLQVELNKQLS----GKKFLLVLDDVWNEN----------YNYW----VEFSRPFEAG- 322 (1450)
Q Consensus 262 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~~----~~~~~~l~~~- 322 (1450)
. ........++..++ ..+.++++|+++... ...+ ..+...+...
T Consensus 103 ---------------~--~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ---------------M--FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ---------------S--CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ---------------h--hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 00111222333332 235799999994321 1111 2232223222
Q ss_pred -CCCcEEEEecCchHHHH-hc----CCCCceeCCCCCHHHHHHHHHhccCCCCchhHHHHHHHHHHhCCCh
Q 037733 323 -AQGSKIIVTTRNHEVAE-IM----GTVPPHPLKELSDNDCLAIFAQHSLGPRELLDEIGKKLVSKCGGLP 387 (1450)
Q Consensus 323 -~~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~P 387 (1450)
..+..|+.||...++.. .+ .....+.+...+.++-.+++..++-...-........|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC
Confidence 23445666676655422 11 1224678888888888888876653211000112345667777765
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.94 E-value=0.0086 Score=76.93 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=37.7
Q ss_pred cceecchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4588999998888877753211 01123457899999999999999999873
No 245
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.75 E-value=0.027 Score=64.80 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=32.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 348999886666544443221 123889999999999999999873
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.69 E-value=0.017 Score=62.87 Aligned_cols=51 Identities=29% Similarity=0.283 Sum_probs=32.1
Q ss_pred cceecchhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLR------NDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45888877666554443211000 0001122889999999999999999974
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.57 E-value=0.016 Score=74.10 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=82.8
Q ss_pred cceecchhHHHHHHHHHhcC----CC---CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH
Q 037733 188 TEVYGREIEKKQVIDLLLRD----DL---RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI 260 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 260 (1450)
.+++|.+..++++.+++... +. -.-.....|.|+|++|+||||||+.++.. ....| +.+....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 56899999999988887530 00 01123456899999999999999999873 33222 3333211
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCC-------hh----hHHhhhccccC--CCCCcE
Q 037733 261 RLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWNEN-------YN----YWVEFSRPFEA--GAQGSK 327 (1450)
Q Consensus 261 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~~~~~l~~--~~~gs~ 327 (1450)
+.... .......+...+.........++++|++.... .. ....+...+.. ...+..
T Consensus 274 ---------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ---------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ---------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 10000 00111222233333334467899999994311 00 11112221111 123445
Q ss_pred EEEecCchH-HHHhcC---C-CCceeCCCCCHHHHHHHHHhcc
Q 037733 328 IIVTTRNHE-VAEIMG---T-VPPHPLKELSDNDCLAIFAQHS 365 (1450)
Q Consensus 328 ilvTtr~~~-v~~~~~---~-~~~~~l~~L~~~~~~~lf~~~~ 365 (1450)
||.||.... +...+. . ...+.+...+.++-.+++..++
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666542 211111 1 1346777888888888887665
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.56 E-value=0.021 Score=66.27 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999997
No 249
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.52 E-value=0.0089 Score=60.84 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=8.5
Q ss_pred cCCCCCccEEEeecccCc
Q 037733 1186 LDNNTSLERIRIYFCENL 1203 (1450)
Q Consensus 1186 ~~~l~~L~~L~l~~n~~~ 1203 (1450)
+..-+.|+.|+|++|.+.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 334444555555554444
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.39 E-value=0.01 Score=62.19 Aligned_cols=113 Identities=10% Similarity=-0.091 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHhC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV-DNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~ 293 (1450)
..++.|+|..|+||||+|..+++. ...+-..++.+....+. + ...+++..++..... ......++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 478999999999999999988873 33332334444333221 1 112333333221110 11233455555555554
Q ss_pred CCcE-EEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 294 GKKF-LLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 294 ~kr~-LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
+.++ +||+|.+..-..+..+.+ ..+.+ .|-.||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 4545 999999965432333333 22332 277899999864
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.36 E-value=0.022 Score=64.27 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 289 (1450)
...++.|+|++|+||||||.+++... ...=..++|++....++.. .+++++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45799999999999999999998742 2222357888877766654 3334432211 12345555555555
Q ss_pred HHhC-CCcEEEEEeCCCC
Q 037733 290 KQLS-GKKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~l~-~kr~LlVlDdv~~ 306 (1450)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5443 4556899999844
No 252
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.22 E-value=0.03 Score=61.80 Aligned_cols=51 Identities=29% Similarity=0.283 Sum_probs=32.4
Q ss_pred cceecchhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLR------NDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+++|.++.++++.+....-... +-.-.+-+.|+|++|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 45888887666655443211000 0001112889999999999999999984
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.21 E-value=0.045 Score=62.27 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=37.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRLTK 264 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~ 264 (1450)
...++.|+|.+|+||||||.+++....... .-..++|++....++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 457999999999999999999887422211 124688999888777665543
No 254
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.17 E-value=0.0073 Score=61.49 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=51.8
Q ss_pred hhhhhcCCCCCccEEEeecc-cCccc----cCccccCCCCCcEEEEccCCCccc----hhcccCCCCCCCceecccCCCc
Q 037733 1181 SVAERLDNNTSLERIRIYFC-ENLKN----LPSGLHNLRQLREIRISLCSKLES----IAERLDNNTSLEKIDTSDCENL 1251 (1450)
Q Consensus 1181 ~~~~~~~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~ 1251 (1450)
.+...+.+-+.|++|+|++| .+... +...+..-+.|+.|+|++|.+... +...+...+.|+.|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445566678888888775 44321 233445556777777777777632 2333444566777777777654
Q ss_pred cc----ccccccCCCccceEeeccC
Q 037733 1252 KI----LPSGLHNLHQLREIILFRC 1272 (1450)
Q Consensus 1252 ~~----~~~~l~~l~~L~~L~l~~n 1272 (1450)
.. +...+..-+.|++|+|++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 32 2233444445555555543
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.16 E-value=0.047 Score=59.45 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=53.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccc--CCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHH-HHHHH
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDH--FDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKL-QVELN 289 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-~~~l~ 289 (1450)
++-|.|++|+||||||.+++.. .... =..++|++....++... +++++..... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999998763 2222 24688999888777542 4555433211 23345554 33332
Q ss_pred HH--h-CCCcEEEEEeCCCC
Q 037733 290 KQ--L-SGKKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~--l-~~kr~LlVlDdv~~ 306 (1450)
.. + ..+.-++|+|-|..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 3 45678999999854
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.16 E-value=0.096 Score=59.83 Aligned_cols=156 Identities=13% Similarity=-0.044 Sum_probs=96.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH-HhC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNK-QLS 293 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~ 293 (1450)
.++..++|..|.||++.|+.+.+... ...|+....+.+....++.+ +.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNA----------------------IFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHH----------------------HHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHH----------------------HHHHhcCcCCc
Confidence 46889999999999999999887321 22343222222322233332 2222221 234
Q ss_pred CCcEEEEEeCCCC-CChhhHHhhhccccCCCCCcEEEEecCc-------hHHHHhc-CCCCceeCCCCCHHHHHHHHHhc
Q 037733 294 GKKFLLVLDDVWN-ENYNYWVEFSRPFEAGAQGSKIIVTTRN-------HEVAEIM-GTVPPHPLKELSDNDCLAIFAQH 364 (1450)
Q Consensus 294 ~kr~LlVlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtr~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 364 (1450)
+++-++|+|+++. .....++.+...+.....++.+|++|.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5677889999876 4446677776666554557777765532 2344443 33467889999999888777665
Q ss_pred cCCCC-chhHHHHHHHHHHhCCChHHHHHH
Q 037733 365 SLGPR-ELLDEIGKKLVSKCGGLPLAAQTL 393 (1450)
Q Consensus 365 ~~~~~-~~~~~~~~~i~~~~~G~PLai~~~ 393 (1450)
+-... ...++.+..+++.++|.+.++...
T Consensus 155 ~~~~g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 42211 234677888999999988877653
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.06 E-value=0.047 Score=62.18 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 289 (1450)
...++.|.|.+|+||||||.+++... ...=..++|++....++... +..++.... ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34688999999999999999988742 22224689999887766542 333332211 02345666666666
Q ss_pred HHhCC-CcEEEEEeCCCC
Q 037733 290 KQLSG-KKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~l~~-kr~LlVlDdv~~ 306 (1450)
...+. +.-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 65543 455999999843
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.98 E-value=0.024 Score=58.95 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|++.++++.+.+.... .....+|+|+|+.|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36677788888886542 23468999999999999999999986
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.94 E-value=0.064 Score=58.69 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 037733 218 VPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 218 v~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+.++|++|+||||||+.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999973
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.91 E-value=0.055 Score=61.39 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=54.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 289 (1450)
...++.|+|.+|+||||||.+++... ...=..++|++....++.. .+..++.... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35689999999999999999998632 2222468899888766643 2333332211 02234555555555
Q ss_pred HHhC-CCcEEEEEeCCCC
Q 037733 290 KQLS-GKKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~l~-~kr~LlVlDdv~~ 306 (1450)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3456999999843
No 261
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.75 E-value=0.039 Score=59.49 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=34.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRL 262 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~ 262 (1450)
...++.|+|++|+||||||+.++....... .-..++|+.....++..++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 346899999999999999999987321211 1246888887765554443
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.73 E-value=0.014 Score=59.13 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=59.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC---ccCHHHHHHHHHHHh---hcCCCCCCC-------CHHH
Q 037733 217 VVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD---DFDVIRLTKAILTSI---VAGQNVDNH-------DLNK 283 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l---~~~~~~~~~-------~~~~ 283 (1450)
.|-|++..|.||||.|-..+- +...+=-.+.++.... ......++..+.-.+ +..-..... ....
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 455666667999999988876 3322222345554433 223333333321000 000000111 1122
Q ss_pred HHHHHHHHhCCCcE-EEEEeCCCCC---ChhhHHhhhccccCCCCCcEEEEecCch
Q 037733 284 LQVELNKQLSGKKF-LLVLDDVWNE---NYNYWVEFSRPFEAGAQGSKIIVTTRNH 335 (1450)
Q Consensus 284 ~~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 335 (1450)
.....++.+.+.+| |||||++-.. ..-..+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 33445556666655 9999998221 1122334444455555677899999984
No 263
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.72 E-value=0.12 Score=56.82 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccc-cCCcEEEEEeCCccCHHHHHHHHHHHh------hcCCCCCCCCHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQD-HFDLKTWTCVSDDFDVIRLTKAILTSI------VAGQNVDNHDLNKLQ 285 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l------~~~~~~~~~~~~~~~ 285 (1450)
....+|+|+|..|+||||||+.+........ ....+..|+...-+-.......+.... .........+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4578999999999999999999876322111 122344435443332233333333221 111112455666666
Q ss_pred HHHHHHhCC
Q 037733 286 VELNKQLSG 294 (1450)
Q Consensus 286 ~~l~~~l~~ 294 (1450)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666655444
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.54 E-value=0.059 Score=57.65 Aligned_cols=116 Identities=15% Similarity=0.045 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC-------------------
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN------------------- 275 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 275 (1450)
..+++|+|++|+|||||++.++.... ..=..+.|+.... ...++...+. .+.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 36899999999999999999986322 1112466665543 3333333322 2221100
Q ss_pred ---CCCCCHHHHHHHHHHHh---CCCcEEEEEeCCCCC---ChhhHHhhhccccC--CCCCcEEEEecCch
Q 037733 276 ---VDNHDLNKLQVELNKQL---SGKKFLLVLDDVWNE---NYNYWVEFSRPFEA--GAQGSKIIVTTRNH 335 (1450)
Q Consensus 276 ---~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~---~~~~~~~~~~~l~~--~~~gs~ilvTtr~~ 335 (1450)
....+..++...+...+ +-++.+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01114455555554443 223349999998521 22222333222221 12477888888865
No 265
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.39 E-value=0.042 Score=68.85 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=59.1
Q ss_pred CcceecchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCH
Q 037733 187 KTEVYGREIEKKQVIDLLLRDDL-------RNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDV 259 (1450)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 259 (1450)
-..+.|.++.++++.+.+.-.-. .+-...+-|.++|++|.|||.+|+++++.. ... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEecc----
Confidence 34577888888887776643210 011234457899999999999999999842 222 233321
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 037733 260 IRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 260 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
. +++... -......+...+...-+..+.+|++|+++.
T Consensus 545 ~----~l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 P----ELLTMW------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp H----HHHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred c----hhhccc------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1 121111 122334455555555567889999999854
No 266
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.37 E-value=0.052 Score=51.50 Aligned_cols=58 Identities=21% Similarity=0.131 Sum_probs=42.5
Q ss_pred eEeeccCCCc-cccCCCCCCCCCcceEeeccCCCcccCcccccCCCCCceEEEeCCCCccc
Q 037733 1266 EIILFRCGNL-VSFPEGGLPCAKLTRLEISYCKRLQALPKGLHNLTSLQELRIIGDSPLCD 1325 (1450)
Q Consensus 1266 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 1325 (1450)
.++-+++.+. ..+|..+. ++|+.|+|++|.+....+..|..+++|+.|+|++|+..|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5556666553 25665543 4789999999998886667788899999999999976543
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.27 E-value=0.075 Score=60.28 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 289 (1450)
..+++.|.|.+|+||||||.+++... ...=..++|++....++... +..++.... ....+.+++...++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34689999999999999999988742 22223688999887776432 333332111 01234455554444
Q ss_pred HHh-CCCcEEEEEeCCC
Q 037733 290 KQL-SGKKFLLVLDDVW 305 (1450)
Q Consensus 290 ~~l-~~kr~LlVlDdv~ 305 (1450)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 433 2345589999984
No 268
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.23 E-value=0.063 Score=60.57 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccccc----CCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDH----FDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
...++.|+|.+|+||||+|.+++........ -..++|++....++..++.+ ++..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 3468999999999999999998864221111 24688999888777666553 34444
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.18 E-value=0.09 Score=58.09 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC-ccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD-DFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1450)
...+++|+|.+|+||||++..++......... .+..+.... .....+.+.......+.... ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 35699999999999999999988632211111 344444322 11222223322222222111 12234444444443 3
Q ss_pred CCCcEEEEEeCC
Q 037733 293 SGKKFLLVLDDV 304 (1450)
Q Consensus 293 ~~kr~LlVlDdv 304 (1450)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34457888944
No 270
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.11 E-value=0.063 Score=50.92 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=44.3
Q ss_pred cEEEecCCCCC--cCCcCccCCCccceeeccCCCccccccc-ccccCCccEEecCCCC
Q 037733 599 RVFSLCGYHIS--KLPDSIGDLRYLRYLNLSGTGIRTLPES-VNKLYNLHTLLLNDCH 653 (1450)
Q Consensus 599 r~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~L~~c~ 653 (1450)
.+++.++..++ .+|..+. .+|++|+|++|.|+.||.. +..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 47888888888 8887654 4799999999999999876 5889999999999853
No 271
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.97 E-value=0.068 Score=60.38 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=39.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc---------cC-----CcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQD---------HF-----DLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
...++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.+. +..+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHc
Confidence 457999999999999999999886422111 11 36889998887777666543 3444
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.87 E-value=0.044 Score=61.24 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCc-EEEEEeCCcc
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDL-KTWTCVSDDF 257 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~ 257 (1450)
++++.+..- .+...++|+|.+|+|||||++.+.+.... .+=+. ++++-+++..
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEESSCH
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEEEEEecCCh
Confidence 556666543 23468999999999999999998873211 11122 3456666554
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.52 E-value=0.054 Score=56.66 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
-.++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 23468999999999999999999986
No 274
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.43 E-value=0.22 Score=55.78 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=36.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTS 269 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1450)
..++.|.|.+|+||||+|..++.+...++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999886432222 567787765 4556666666554
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.31 E-value=0.14 Score=54.44 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=30.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcccccc---c-cCCcEEEEEeCCccC
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQ---D-HFDLKTWTCVSDDFD 258 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~ 258 (1450)
...+++|+|+.|+|||||++.++...... . .-..++|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 35799999999999999999997621111 1 123577877655433
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.31 E-value=0.073 Score=58.67 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444555444322 334568999999999999999999986
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.30 E-value=0.035 Score=56.42 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.27 E-value=0.048 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999873
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.13 E-value=0.44 Score=52.63 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCCCC--CCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHH--HHHHHHHHHh
Q 037733 195 IEKKQVIDLLLRDDLR--NDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVI--RLTKAILTSI 270 (1450)
Q Consensus 195 ~~~~~l~~~L~~~~~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l 270 (1450)
.-.+.+.+.|...... ......++.|+|++|+||||++..++.. .+..=..+.++.. +.+... +-+...++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHc
Confidence 3445555555432110 1235689999999999999999999873 2222123444443 333221 1122333333
Q ss_pred hcCC--CCCCCCHHHH-HHHHHHHhCCCcEEEEEeCCCC
Q 037733 271 VAGQ--NVDNHDLNKL-QVELNKQLSGKKFLLVLDDVWN 306 (1450)
Q Consensus 271 ~~~~--~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~ 306 (1450)
+... .....+...+ ...+...+..+.-++|+|-.-.
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2111 1112233322 3344444445555888886643
No 280
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.09 E-value=0.12 Score=58.78 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=32.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccC----CcEEEEEeCCccCHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHF----DLKTWTCVSDDFDVI 260 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~ 260 (1450)
...++.|+|++|+|||||+..++......... ..++|+.....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 45899999999999999999998632111111 235888876654433
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.98 E-value=0.046 Score=56.74 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|+|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.96 E-value=0.16 Score=58.95 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHHHHHhhc-------CCCCCCCCHH-----
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAILTSIVA-------GQNVDNHDLN----- 282 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~----- 282 (1450)
+.++|+|.+|+||||||..+..+...+ .-+..+++.+++..+ ..++..++...-.. ....+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999998743221 224556666666543 44555444332000 0110111111
Q ss_pred ---HHHHHHHHHhCCCcEEEEEeCC
Q 037733 283 ---KLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 283 ---~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
.+++.++. .+++++|+++||+
T Consensus 231 ~~ltiAEyFrd-~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRD-EQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHH-HSCCEEEEEEECT
T ss_pred HHHHHHHHHHH-hcCCcEEEEeccH
Confidence 12222222 2689999999999
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.91 E-value=0.049 Score=55.28 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 037733 216 SVVPIVGMGGLGKTTLARHV 235 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v 235 (1450)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.85 E-value=0.046 Score=55.17 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.76 E-value=0.057 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.76 E-value=0.11 Score=58.00 Aligned_cols=45 Identities=27% Similarity=0.278 Sum_probs=32.8
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 191 YGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
|+-+.-.+++++.+...- ..+....|.|+|++|+||||+|+.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 455566677777764321 233456789999999999999999987
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.71 E-value=0.062 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+|+|+|+.|+||||+|+.++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999873
No 288
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.64 E-value=0.1 Score=57.87 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=33.3
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|....+..+...+.... ......+|+|.|+.|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555655555554442 345678999999999999999999875
No 289
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.59 E-value=0.086 Score=57.08 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 196 EKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555554432 344568999999999999999999987
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.50 E-value=0.23 Score=57.18 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccc----cCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQD----HFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
...++.|+|++|+|||||+..++-...... .-..++|+.....++..++. ++++.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~ 236 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRF 236 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHc
Confidence 346999999999999999997753211111 22458888877666554433 344444
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.49 E-value=0.063 Score=54.61 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.31 E-value=0.061 Score=55.06 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+.|.|+|++|+||||+|+.++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999987
No 293
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.29 E-value=0.086 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+++|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.27 E-value=0.83 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.26 E-value=0.056 Score=54.60 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|+|+.|+||||+|+.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 296
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.25 E-value=0.091 Score=60.53 Aligned_cols=50 Identities=30% Similarity=0.281 Sum_probs=35.8
Q ss_pred ceecchhHHHHHHHHHhcC-------C--CCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 189 EVYGREIEKKQVIDLLLRD-------D--LRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3789998888888877310 0 001113456889999999999999999973
No 297
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.13 E-value=0.55 Score=54.69 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 196 EKKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 196 ~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
-.+++.++|..... ......++|.++|.+|+||||+|..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666643211 01235789999999999999999998863
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.12 E-value=0.079 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999986
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.08 E-value=0.071 Score=55.35 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+||||+|+.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.95 E-value=0.084 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47999999999999999997553
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.93 E-value=0.74 Score=51.39 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.90 E-value=0.068 Score=55.63 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.87 E-value=0.081 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.73 E-value=0.084 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.72 E-value=0.068 Score=60.63 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLSGK 295 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1450)
.+++|+|+.|+||||+.+.+... +.......+ +.+.++.... .... ........ ...+.......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~-~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQRE-VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCS-SSEEEEEE-BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcc-ccceeeee-eccccCCHHHHHHHHhhhC
Confidence 59999999999999999998762 221112222 2222221100 0000 00000000 0001122445788888889
Q ss_pred cEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHH
Q 037733 296 KFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVA 338 (1450)
Q Consensus 296 r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 338 (1450)
+=+|++|.+.+. +.+..+.... ..|..|++||...+.+
T Consensus 197 PdvillDEp~d~--e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRDL--ETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCCCH--HHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999753 4455443332 2366789999876544
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.72 E-value=0.11 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.71 E-value=0.095 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.67 E-value=0.072 Score=54.21 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++|.|+|++|+||||+|+.+++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 309
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.64 E-value=0.89 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998863
No 310
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.64 E-value=0.096 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.62 E-value=0.088 Score=56.86 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|+|++|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999987
No 312
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.59 E-value=0.094 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.58 E-value=0.098 Score=53.68 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.58 E-value=0.11 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+..+|+|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.56 E-value=0.096 Score=56.67 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.54 E-value=0.085 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 317
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.43 E-value=0.57 Score=49.82 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccc-cccccC-CcEEEEEeCCccCHHHHHHHHHHHhhcCC
Q 037733 197 KKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDD-RVQDHF-DLKTWTCVSDDFDVIRLTKAILTSIVAGQ 274 (1450)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 274 (1450)
.++++..+..+ +.+.|+|..|+||||+...+.-+. ...... ...+.+.........++.+.+...+....
T Consensus 66 q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 66 ESEILEAISQN--------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 44555555443 478999999999998766554321 111111 22333333333333344444443332210
Q ss_pred C-------------------CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 037733 275 N-------------------VDNHDLNKLQVELNKQLSGKKFLLVLDDVWNE 307 (1450)
Q Consensus 275 ~-------------------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 307 (1450)
. .-..+.+.+...+...+.+- -+||+|.++..
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 0 00123555556665544333 47899999763
No 318
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.41 E-value=0.11 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+.+||.|.|++|+||+|.|+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.38 E-value=0.079 Score=55.20 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.37 E-value=0.21 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.37 E-value=0.1 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.37 E-value=0.11 Score=54.54 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.34 E-value=0.4 Score=55.47 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999873
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.34 E-value=0.13 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+|.|+|++|+||||+|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.33 E-value=0.095 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 326
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.31 E-value=0.074 Score=59.30 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCc-EEEEEeCCcc
Q 037733 198 KQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDL-KTWTCVSDDF 257 (1450)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~ 257 (1450)
-++++.+..- ++...++|+|.+|+|||+|++++++.... .+=+. ++++-+++..
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCCH
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccCc
Confidence 4667777543 23457899999999999999999873221 11222 3455565543
No 327
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.24 E-value=0.11 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.24 E-value=0.14 Score=50.67 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999873
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.23 E-value=0.1 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.18 E-value=0.11 Score=56.44 Aligned_cols=23 Identities=22% Similarity=0.611 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.14 E-value=0.1 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|.|++|+||||+|+.+++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.13 E-value=0.088 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.|+|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 333
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.12 E-value=0.89 Score=52.58 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAILTS 269 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~ 269 (1450)
++++.|..- .+...++|+|.+|+|||+|+.++.++. .+.+-+.++++-+++... +.++.+++...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 466666443 234678999999999999999998742 123346677787877654 45666666554
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.09 E-value=0.12 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.05 E-value=0.089 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.04 E-value=0.1 Score=54.28 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|+|.|+.|+||||+|+.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.03 E-value=0.12 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.+.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.98 E-value=0.12 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|.|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.95 E-value=0.11 Score=52.95 Aligned_cols=24 Identities=17% Similarity=0.545 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.93 E-value=0.1 Score=54.27 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.84 E-value=0.085 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 342
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.77 E-value=0.44 Score=55.38 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAILT 268 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~ 268 (1450)
++++.|..- .+...++|.|.+|+|||+|+.++.++. .+.+-+.++++-+++... ..++..++..
T Consensus 154 rvID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 356666443 234578999999999999999998742 223457788888887764 5566666654
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.76 E-value=0.11 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 344
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.76 E-value=0.092 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999976
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.73 E-value=0.15 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.66 E-value=0.14 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3467999999999999999999986
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.66 E-value=0.14 Score=56.79 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 348
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.63 E-value=0.12 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|+|+.|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 349
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.56 E-value=0.1 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.55 E-value=0.16 Score=49.88 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.47 E-value=0.1 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 352
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.47 E-value=0.49 Score=52.83 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=36.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
..++.|.|.+|+||||+|..++.+... .=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358899999999999999999874322 1134666665 345667777665544
No 353
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.46 E-value=0.15 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|+|+.|+||||+|+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 354
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.44 E-value=0.23 Score=59.04 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+.|.|.+|+||||++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999998874
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.41 E-value=0.28 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.40 E-value=0.12 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.40 E-value=0.22 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.38 E-value=0.15 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.32 E-value=0.14 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 360
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.31 E-value=0.3 Score=50.27 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.31 E-value=0.16 Score=54.54 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|.|+.|+||||||+.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.29 E-value=1.4 Score=52.28 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 197 KKQVIDLLLRDDLR---NDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 197 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++.+.+...... ...+.++|.|+|.+|+||||++..++.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555432111 124578999999999999999999986
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.25 E-value=0.14 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.23 E-value=0.092 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=17.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 365
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.13 E-value=0.16 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++.+||+|.|-|||||||.|..++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4579999999999999999887765
No 366
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.11 E-value=0.83 Score=54.09 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAIL 267 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 267 (1450)
..++.|.|.+|+||||+|..++.+..... =..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 46899999999999999999987432211 12577777544 3455555554
No 367
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.09 E-value=0.82 Score=53.41 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=30.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD 258 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 258 (1450)
....+++|+|..|+|||||++.++.- .+. -...+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 35689999999999999999999873 221 23455554444443
No 368
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.05 E-value=0.54 Score=54.87 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999873
No 369
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.01 E-value=0.6 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999873
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.97 E-value=0.13 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.89 E-value=0.15 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..|.|.|++|+||||+|+.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 372
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.86 E-value=0.18 Score=55.34 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.86 E-value=0.16 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.84 E-value=0.16 Score=52.41 Aligned_cols=21 Identities=38% Similarity=0.752 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.74 E-value=0.15 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.72 E-value=0.22 Score=50.55 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 197 KKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+..+..++... ++...+.|+|++|+||||+|.++++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555321 22346899999999999999999873
No 377
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.66 E-value=0.28 Score=56.90 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=35.2
Q ss_pred cceecchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 188 TEVYGREIEKKQVIDLLLRD--------DLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++|-++.++.+...+... ........+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45789888888877666321 000111235588999999999999999987
No 378
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.62 E-value=0.21 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.58 E-value=0.18 Score=52.89 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999863
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.55 E-value=0.15 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...|.|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 381
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.52 E-value=0.66 Score=51.07 Aligned_cols=90 Identities=14% Similarity=0.030 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCc-cCHHHHHHHHHHHhhcCC--CCCCCCHHHHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDD-FDVIRLTKAILTSIVAGQ--NVDNHDLNKLQVELNKQ 291 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~ 291 (1450)
..+++++|.+|+||||++..++... ...=..+.++..... ....+.++......+..- .....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988632 222123455554322 122222333333332211 00123444443333333
Q ss_pred hC-CCcEEEEEeCCCC
Q 037733 292 LS-GKKFLLVLDDVWN 306 (1450)
Q Consensus 292 l~-~kr~LlVlDdv~~ 306 (1450)
++ ..-=++|+|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 33 2223788887643
No 382
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.44 E-value=0.21 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+.++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.38 E-value=0.2 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999987
No 384
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.21 E-value=0.18 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 385
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.14 E-value=0.73 Score=56.05 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH-HHh--
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELN-KQL-- 292 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~l-- 292 (1450)
+++.|.|.+|+||||++..+..... .. ...+.+.+........ +.+.++. ...+...+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~--~~-g~~Vl~~ApT~~Aa~~----L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE--SL-GLEVGLCAPTGKAARR----LGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH--HT-TCCEEEEESSHHHHHH----HHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCeEEEecCcHHHHHH----hHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 5888999999999999999886322 11 2334444432222222 2222211 1111111100000 000
Q ss_pred ---CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecC
Q 037733 293 ---SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTR 333 (1450)
Q Consensus 293 ---~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr 333 (1450)
..+.-+||+|.+...+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0122489999997776666777766654 4667776543
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.14 E-value=0.22 Score=57.03 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEE-EEEeCCccCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKT-WTCVSDDFDVIRLTKAILTSIVAGQNVDNHDLNKLQVELNKQLS 293 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1450)
..+++|+|+.|+||||+++.+... +.......+ ++.. +... ..+.-. .+..+.... .+...+...++..+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~--~~e~--~~~~~~-~~v~Q~~~g-~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED--PIEY--VFKHKK-SIVNQREVG-EDTKSFADALRAALR 207 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEES--SCCS--CCCCSS-SEEEEEEBT-TTBSCSHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecc--cHhh--hhccCc-eEEEeeecC-CCHHHHHHHHHHHhh
Confidence 468999999999999999999862 221112223 2221 1110 000000 000000000 001122456777777
Q ss_pred CCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHH
Q 037733 294 GKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEV 337 (1450)
Q Consensus 294 ~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v 337 (1450)
..+=+|++|.+.+. +......... ..|..|+.|+...++
T Consensus 208 ~~pd~illdE~~d~--e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 208 EDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp SCCSEEEESCCCSH--HHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hCcCEEEECCCCCH--HHHHHHHHHH---hcCCEEEEEECcchH
Confidence 77789999999643 3333322222 346678888877543
No 387
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.11 E-value=0.16 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 388
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.06 E-value=0.19 Score=52.83 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.02 E-value=0.23 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.94 E-value=0.17 Score=54.22 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 391
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.85 E-value=0.61 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
....+++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.83 E-value=0.2 Score=52.62 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.81 E-value=0.21 Score=55.52 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 394
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.73 E-value=0.35 Score=56.18 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=54.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhccccccccCCc-EEEEEeCCccC-HHHHHHHHHHHhhcCC-
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLA-RHVYNDDRVQDHFDL-KTWTCVSDDFD-VIRLTKAILTSIVAGQ- 274 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~~- 274 (1450)
+.++.|..- .+...++|+|.+|+|||+|| ..+.+.. .-+. ++++-+++... +.++.+++...=....
T Consensus 151 raID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 456666443 23456899999999999996 4676632 2443 46777776654 4555555544211110
Q ss_pred -----CCCCCCHH---------HHHHHHHHHhCCCcEEEEEeCC
Q 037733 275 -----NVDNHDLN---------KLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 275 -----~~~~~~~~---------~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
..+..... ..++.++. +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 00111111 12233333 589999999998
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.71 E-value=0.29 Score=51.58 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 192 GREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+.++..+.+.+.+... +..+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555555555322 4689999999999999999999874
No 396
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.66 E-value=0.61 Score=63.93 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 289 (1450)
..+++.|+|++|+|||+||.++..... .+=..++|+.+.+.++... ++.++..... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457899999999999999999987432 2223577888877776555 3344311100 1223344444454
Q ss_pred HHh-CCCcEEEEEeCCC
Q 037733 290 KQL-SGKKFLLVLDDVW 305 (1450)
Q Consensus 290 ~~l-~~kr~LlVlDdv~ 305 (1450)
+.. +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 443 3466799999994
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.62 E-value=0.26 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.59 E-value=0.25 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 399
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.57 E-value=0.25 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 400
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.52 E-value=0.2 Score=51.05 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998864
No 401
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.52 E-value=1 Score=54.23 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=36.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
...++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999999998743222 113577777644 4566666665443
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.49 E-value=0.14 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.47 E-value=0.18 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.45 E-value=0.12 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 405
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.36 E-value=0.23 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 406
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.32 E-value=0.43 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999984
No 407
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.26 E-value=1.2 Score=52.40 Aligned_cols=53 Identities=17% Similarity=0.069 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSI 270 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 270 (1450)
..++.|.|.+|+||||+|..++.+..... =..++|++... +..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHHH
Confidence 46899999999999999999987432211 13577776653 4556666665443
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.25 E-value=0.28 Score=60.65 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=36.4
Q ss_pred cceecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 188 TEVYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56899998888888877543 37899999999999999999873
No 409
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.10 E-value=0.56 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.|+|-|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999873
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.09 E-value=0.57 Score=51.95 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=32.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCC-cEEEEEeCCccCHHHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFD-LKTWTCVSDDFDVIRLTKAILT 268 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 268 (1450)
..+++|+|.+|+|||||++.++..... .-. .++|+.... +..++.+.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 368999999999999999999874322 212 456665433 33444444433
No 411
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.09 E-value=0.25 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 412
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.07 E-value=0.25 Score=52.60 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 413
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.00 E-value=0.25 Score=51.53 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.99 E-value=0.25 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.++++|+|+.|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999873
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.98 E-value=0.26 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.96 E-value=0.31 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 417
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.94 E-value=0.38 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999999874
No 418
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.94 E-value=0.25 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999884
No 419
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.93 E-value=0.18 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh-c
Q 037733 215 FSVVPIVGMGGLGKTTLARHVY-N 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~-~ 237 (1450)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 420
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.86 E-value=0.26 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+|.|.|++|+||+|.|+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999987
No 421
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.64 E-value=0.26 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 422
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.61 E-value=0.28 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 423
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.55 E-value=0.59 Score=53.69 Aligned_cols=86 Identities=14% Similarity=0.276 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccccccccCC----cEEEEEeCCcc-CHHHHHHHHHHH--hh-----cCCCCCCCCHHH
Q 037733 216 SVVPIVGMGGLGKTTLARHVYNDDRVQDHFD----LKTWTCVSDDF-DVIRLTKAILTS--IV-----AGQNVDNHDLNK 283 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~--l~-----~~~~~~~~~~~~ 283 (1450)
..++|.|.+|+|||+|+.++++.... +-+ .++++-+++.. .+.++..++... +. .... +......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ats-d~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLA-NDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEET-TSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECC-CCCHHHH
Confidence 45789999999999999999884332 223 56666666554 355666655442 11 0111 1111111
Q ss_pred -----HHHHHHHHh---CCCcEEEEEeCC
Q 037733 284 -----LQVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 284 -----~~~~l~~~l---~~kr~LlVlDdv 304 (1450)
....+.+++ +++.+|+++||+
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111233333 478999999999
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.42 E-value=0.28 Score=51.78 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 425
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.39 E-value=0.55 Score=53.52 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 197 KKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++.+.+... ..+..+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23568999999999999999999875
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.30 E-value=0.28 Score=51.44 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.29 E-value=0.3 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...|.|.|++|+||||+|+.+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 428
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.25 E-value=0.3 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.17 E-value=0.34 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 430
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.10 E-value=0.29 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.08 E-value=0.87 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 432
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.07 E-value=0.24 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 433
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.05 E-value=0.35 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999986
No 434
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.99 E-value=0.32 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999986
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.97 E-value=0.33 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+.|.|.|+.|+||||||.+++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 436
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.96 E-value=0.4 Score=52.13 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+..++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568899999999999999999985
No 437
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.76 E-value=0.78 Score=53.35 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhccccccccCCc-EEEEEeCCccC-HHHHHHHHHHHhhc---
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLA-RHVYNDDRVQDHFDL-KTWTCVSDDFD-VIRLTKAILTSIVA--- 272 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~--- 272 (1450)
+.++.|..- .+...++|+|.+|+|||+|| ..+++.. .-+. ++++-+++... +.++.+++...=..
T Consensus 164 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPI-----GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCE-----ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccc-----ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 456666432 23456899999999999996 4677632 2453 46777776654 45555555542111
Q ss_pred ----CCCCCCCCHH---------HHHHHHHHHhCCCcEEEEEeCC
Q 037733 273 ----GQNVDNHDLN---------KLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 273 ----~~~~~~~~~~---------~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
... +..... ..++.++. +++.+||++||+
T Consensus 235 vvV~ata-d~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASA-SDPASLQYIAPYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp EEEEECT-TSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 111 111111 12233333 589999999998
No 438
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.61 E-value=0.33 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999987
No 439
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.57 E-value=0.29 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 440
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.54 E-value=0.85 Score=52.56 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 211 NDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 211 ~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.....++..|.|.+|.||||+.++.++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 456789999999999999999999885
No 441
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.51 E-value=0.34 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 442
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.51 E-value=0.34 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999986
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.50 E-value=0.18 Score=55.52 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=18.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.50 E-value=0.35 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.49 E-value=0.81 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
+...|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999884
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.36 E-value=0.37 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999997
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.29 E-value=0.37 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 448
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.29 E-value=0.36 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 449
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.28 E-value=0.35 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 450
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.24 E-value=0.35 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 451
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.20 E-value=0.36 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 452
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.20 E-value=0.45 Score=51.05 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD 255 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1450)
..++.|.|.+|+||||+|.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 4689999999999999998887632 11223577777544
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.15 E-value=0.36 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.13 E-value=0.37 Score=51.15 Aligned_cols=25 Identities=36% Similarity=0.228 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999987
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.12 E-value=0.43 Score=55.57 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 197 KKQVIDLLLRDDL---RNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 197 ~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+++.+++..... .......+|.|+|.+|+||||+|..++..
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455665543211 01134579999999999999999998874
No 456
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.09 E-value=0.37 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.06 E-value=0.44 Score=51.40 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHh
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAG--QNVDNHDLNKLQVELNKQL 292 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~l~~~l 292 (1450)
..+++|+|+.|+||||+++.+..- +...+...+++.-. +... +.+.. ..+..+ ...+.. .+...+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~-~i~~--~~~~~-~~~v~q~~~gl~~~---~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED-PIEY--VFKHK-KSIVNQREVGEDTK---SFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEES-SCCS--CCCCS-SSEEEEEEBTTTBS---CHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCC-ccee--ecCCc-ceeeeHHHhCCCHH---HHHHHHHHHH
Confidence 469999999999999999998862 22222333333211 1000 00000 000000 000111 2344566666
Q ss_pred CCCcEEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCchHHH
Q 037733 293 SGKKFLLVLDDVWNENYNYWVEFSRPFEAGAQGSKIIVTTRNHEVA 338 (1450)
Q Consensus 293 ~~kr~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 338 (1450)
..++=+|++|...+. +......... ..|.-|++||.+..+.
T Consensus 96 ~~~p~illlDEp~D~--~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 REDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHCCSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hhCCCEEEeCCCCCH--HHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 556778899998632 3333322222 2466788888876543
No 458
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.97 E-value=1.1 Score=61.57 Aligned_cols=86 Identities=19% Similarity=0.096 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 289 (1450)
..+++.|.|++|+||||||.+++.... ..=..++|++....++... ++.++..... +..+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999999987432 2223688888877776532 3444432111 2345666666665
Q ss_pred HHh-CCCcEEEEEeCCCC
Q 037733 290 KQL-SGKKFLLVLDDVWN 306 (1450)
Q Consensus 290 ~~l-~~kr~LlVlDdv~~ 306 (1450)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 443 24556999999853
No 459
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=85.97 E-value=0.92 Score=58.93 Aligned_cols=103 Identities=10% Similarity=0.086 Sum_probs=51.6
Q ss_pred HhCCCcEEEEEeCCCCCC-hh-----hHHhhhccccCCCCCcEEEEecCchHHHHhcCCCCce---eCCCCCH---H---
Q 037733 291 QLSGKKFLLVLDDVWNEN-YN-----YWVEFSRPFEAGAQGSKIIVTTRNHEVAEIMGTVPPH---PLKELSD---N--- 355 (1450)
Q Consensus 291 ~l~~kr~LlVlDdv~~~~-~~-----~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~---~l~~L~~---~--- 355 (1450)
.+..++-|++||..-... .. .|..+ ..+.. ..|+.||++|.+.+.+........+ ++..... +
T Consensus 864 ~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il-~~L~~-~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~ 941 (1022)
T 2o8b_B 864 MHATAHSLVLVDELGRGTATFDGTAIANAVV-KELAE-TIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPS 941 (1022)
T ss_dssp HHCCTTCEEEEECTTTTSCHHHHHHHHHHHH-HHHHH-TSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC---------
T ss_pred HhCCCCcEEEEECCCCCCChHHHHHHHHHHH-HHHHh-cCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCC
Confidence 446778899999995421 11 13222 22321 2378999999998887654432221 1110000 0
Q ss_pred -HHHHHHHhccCCCCchhHHHHHHHHHHhCCChHHHHHHHhhhc
Q 037733 356 -DCLAIFAQHSLGPRELLDEIGKKLVSKCGGLPLAAQTLGGLLR 398 (1450)
Q Consensus 356 -~~~~lf~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~L~ 398 (1450)
+......+...+.. ....+-++++.+ |+|-.+..-|..+.
T Consensus 942 ~~~l~~ly~l~~G~~--~~Sygi~vA~l~-Glp~~vi~rA~~~~ 982 (1022)
T 2o8b_B 942 QETITFLYKFIKGAC--PKSYGFNAARLA-NLPEEVIQKGHRKA 982 (1022)
T ss_dssp ----CEEEEEESSCC--CCCHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CCceEEEeeecCCCC--CCCHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 11110111111211 134556666554 89988887776553
No 460
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.93 E-value=0.47 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 461
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.88 E-value=1.9 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 462
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.85 E-value=0.37 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 463
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.81 E-value=0.8 Score=53.08 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhccccccccCC-cEEEEEeCCccC-HHHHHHHHHHHhhcCC-
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLA-RHVYNDDRVQDHFD-LKTWTCVSDDFD-VIRLTKAILTSIVAGQ- 274 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~- 274 (1450)
+.++.|..- .+...++|.|..|+|||+|| ..+.+. .+-+ .++++-+++... +.++.+++.+.=....
T Consensus 151 kaID~l~Pi-----grGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPI-----GRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeecccccc-----ccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 356666433 23456889999999999997 566662 2234 357788887654 4555555443211110
Q ss_pred -----CCCCCCHH---------HHHHHHHHHhCCCcEEEEEeCC
Q 037733 275 -----NVDNHDLN---------KLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 275 -----~~~~~~~~---------~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
..+..... ..++.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 00111111 23334443 689999999999
No 464
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.77 E-value=0.37 Score=48.96 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.74 E-value=0.39 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 466
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.70 E-value=0.4 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 467
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=85.62 E-value=1.4 Score=51.62 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccC-HHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFD-VIRLTKAI 266 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 266 (1450)
++++.|..- .+...++|.|..|+|||+|+.++++. .+-+.++++-+++... +.++..++
T Consensus 216 rvID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 466766443 23467899999999999999999863 2335678888887765 44555443
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.59 E-value=0.41 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.32 E-value=0.43 Score=54.33 Aligned_cols=24 Identities=29% Similarity=0.126 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
...+++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 470
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.32 E-value=1 Score=61.11 Aligned_cols=87 Identities=18% Similarity=0.089 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQN----VDNHDLNKLQVELN 289 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 289 (1450)
..+++.|.|.+|+||||||.+++.... ..=..++|++....++... ++.++.... ....+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 457899999999999999999987432 2224688998887776532 344432211 02345566665555
Q ss_pred HHh-CCCcEEEEEeCCCCC
Q 037733 290 KQL-SGKKFLLVLDDVWNE 307 (1450)
Q Consensus 290 ~~l-~~kr~LlVlDdv~~~ 307 (1450)
... +.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 443 245569999998543
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.28 E-value=0.41 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 472
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.26 E-value=0.41 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 473
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=85.12 E-value=0.8 Score=51.04 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCC
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSD 255 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 255 (1450)
...++|+|+|-||+||||+|..++... ...=..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 456899999999999999999887632 22112355555543
No 474
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.98 E-value=2.8 Score=49.07 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHH
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTS 269 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 269 (1450)
..++.|.|.+|+||||+|..++.+...+ =..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 4689999999999999999998753222 12466666543 344555555443
No 475
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=84.95 E-value=0.76 Score=52.80 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccc--------ccCC-cEEEEEeCCcc-CHHHHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQ--------DHFD-LKTWTCVSDDF-DVIRLTKAILT 268 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~ 268 (1450)
+.++.|..- .+...++|.|.+|+|||+|+.++++..... ++=+ .++++-+++.. .+.++..++..
T Consensus 136 raID~l~pi-----grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTL-----VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCC-----BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeeccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 345555432 233467899999999999999998754331 1111 45666666554 34555555443
Q ss_pred H--hh-----cCCCCCCCCHHHH-----HHHHHHHh---CCCcEEEEEeCC
Q 037733 269 S--IV-----AGQNVDNHDLNKL-----QVELNKQL---SGKKFLLVLDDV 304 (1450)
Q Consensus 269 ~--l~-----~~~~~~~~~~~~~-----~~~l~~~l---~~kr~LlVlDdv 304 (1450)
. +. .... +....... .-.+.+++ +++.+|+++||+
T Consensus 211 ~g~~~rtvvv~~t~-d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 211 TGALSRSVLFLNKA-DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp TSGGGGEEEEEEET-TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred cccccceEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2 10 0011 11111111 12233333 478999999999
No 476
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.85 E-value=0.53 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 477
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.79 E-value=0.71 Score=53.75 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=49.7
Q ss_pred CcEEEEEEcCCCCcHHHHH-HHHhccccccccCC-cEEEEEeCCccC-HHHHHHHHHHHhhc-------CCCCCCCC---
Q 037733 214 GFSVVPIVGMGGLGKTTLA-RHVYNDDRVQDHFD-LKTWTCVSDDFD-VIRLTKAILTSIVA-------GQNVDNHD--- 280 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~-------~~~~~~~~--- 280 (1450)
+...++|+|.+|+|||+|| ..+++.. .-+ .++++-+++... +.++.+++...=.. ....+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3456789999999999996 5777632 234 356777776653 44444444331100 01101110
Q ss_pred -----HHHHHHHHHHHhCCCcEEEEEeCC
Q 037733 281 -----LNKLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 281 -----~~~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
--..++.++. +++.+||++||+
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1123444554 589999999998
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.75 E-value=0.49 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...|.|.|..|+||||+|+.+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 479
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.73 E-value=1 Score=47.41 Aligned_cols=37 Identities=30% Similarity=0.305 Sum_probs=26.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEE
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTC 252 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 252 (1450)
...|.|.|+.|+||||+++.+..... ..++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 36899999999999999999987432 23444344433
No 480
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.68 E-value=1.3 Score=56.85 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=20.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHH
Q 037733 214 GFSVVPIVGMGGLGKTTLARHV 235 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v 235 (1450)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999998
No 481
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.65 E-value=0.92 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.|.+.|.||+||||+|..++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4778999999999999888874
No 482
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.61 E-value=0.48 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 483
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.50 E-value=0.47 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..++.|+|++|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.50 E-value=0.79 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...|.|.|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=84.23 E-value=0.42 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999975
No 486
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.15 E-value=0.5 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++|.|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999987
No 487
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=84.06 E-value=1.9 Score=50.78 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCcc-CHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDF-DVIRLTKA 265 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 265 (1450)
++++.|..- .+...++|.|..|+|||+|+.++++.. +-+.++++-+++.. .+.++..+
T Consensus 221 rvID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 466777543 234678999999999999999998742 23567777777664 34444444
No 488
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=83.93 E-value=0.64 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.86 E-value=0.53 Score=50.78 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 490
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.86 E-value=1.2 Score=46.12 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
..|.|.|+.|+||||+++.+++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999874
No 491
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=83.79 E-value=1 Score=52.45 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=55.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhccccc----cccCC-cEEEEEeCCccC-HHHHHHHHHHHhh
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLA-RHVYNDDRV----QDHFD-LKTWTCVSDDFD-VIRLTKAILTSIV 271 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~ 271 (1450)
+.++.|..- .+...++|+|.+|+|||+|| ..+.+.... ..+-+ .++++-+++... +.++.+++...=.
T Consensus 151 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPI-----GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 456666443 23456899999999999995 466663221 01234 367777777654 4555555544211
Q ss_pred -------cCCCCCCCCHH---------HHHHHHHHHhCCCcEEEEEeCC
Q 037733 272 -------AGQNVDNHDLN---------KLQVELNKQLSGKKFLLVLDDV 304 (1450)
Q Consensus 272 -------~~~~~~~~~~~---------~~~~~l~~~l~~kr~LlVlDdv 304 (1450)
.... +..... ..++.++. +++.+||++||+
T Consensus 226 m~~tvvV~ata-d~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATA-SDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECT-TSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred cccceEEEECC-CCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 0111 111111 12233333 589999999998
No 492
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=83.67 E-value=2.3 Score=48.92 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=31.8
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 190 VYGREIEKKQVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
++|....+.++.+.+..-. ..... |.|.|.+|+|||++|+.+..
T Consensus 139 ~ig~s~~m~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKIS---CAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHT---TCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhccHHhhHHHHHHHHhc---CCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 6676667777776665432 22333 48999999999999999986
No 493
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.59 E-value=0.54 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 037733 215 FSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 215 ~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
..+++|+|+.|+|||||.+.++.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 494
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.39 E-value=0.56 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 037733 217 VVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 495
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.35 E-value=1 Score=48.06 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcc
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
.+..||... .++...+.++|++|+|||.+|.++++.
T Consensus 92 ~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 355666332 133457999999999999999999873
No 496
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.10 E-value=0.57 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 037733 217 VVPIVGMGGLGKTTLARHVYND 238 (1450)
Q Consensus 217 vv~I~G~gGiGKTtLa~~v~~~ 238 (1450)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 497
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=83.10 E-value=0.88 Score=52.67 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcccccccc--CCcEEEEEeCCcc-CHHHHHHHHHH
Q 037733 199 QVIDLLLRDDLRNDGGFSVVPIVGMGGLGKTTLARHVYNDDRVQDH--FDLKTWTCVSDDF-DVIRLTKAILT 268 (1450)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~ 268 (1450)
++++.|..- .+...++|.|.+|+|||+|+.+++++....+. =+.++++-+++.. .+.++..++..
T Consensus 141 r~ID~l~pi-----grGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 141 STIDGTNTL-----VRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp HHHHTTSCC-----BTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred Eeeeeeecc-----ccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 345655432 23356788999999999999999985433211 1346666666554 35566666654
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=83.10 E-value=0.57 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 037733 216 SVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 216 ~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
-.++|.|++|+||||+|+.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.04 E-value=1.2 Score=60.37 Aligned_cols=85 Identities=19% Similarity=0.102 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhccccccccCCcEEEEEeCCccCHHHHHHHHHHHhhcCCCC----CCCCHHHHHHHH
Q 037733 213 GGFSVVPIVGMGGLGKTTLARHVYNDDRVQDHFDLKTWTCVSDDFDVIRLTKAILTSIVAGQNV----DNHDLNKLQVEL 288 (1450)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 288 (1450)
++.++|-|+|+.|+||||||.++.. ..+..=...+|+.+.+..+... ++.++..... ..+.-++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3568999999999999999999986 3333445688888887777653 5555543221 223334444444
Q ss_pred HHHhC-CCcEEEEEeCC
Q 037733 289 NKQLS-GKKFLLVLDDV 304 (1450)
Q Consensus 289 ~~~l~-~kr~LlVlDdv 304 (1450)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 44443 44569999988
No 500
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.93 E-value=0.46 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 037733 214 GFSVVPIVGMGGLGKTTLARHVYN 237 (1450)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLa~~v~~ 237 (1450)
+...|.|.|+.|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
Done!