BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037735
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 180 bits (457), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 170/334 (50%), Gaps = 26/334 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDL-GTNAVPNTFRIADFGCSTGPNTFI 59
M GG G +SYA NS Q + I + A+T L + V IAD GCS+GPN
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALF 68
Query: 60 AVQNIIDSVE-LKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSY----YAAGVPG 114
AV +I +VE L+ + ++ E+Q+F ND NDFN +F+SLP + GVPG
Sbjct: 69 AVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVP-KVDGVEGSI-QTRRFVNEVMEAYAAQFNNDF 172
SFY LFP+++LHF+HSSY+L WLS+VP ++ +G+I V+ AY QF D
Sbjct: 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDH 188
Query: 173 QTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM 232
FL RAQE+VPGG L + + + L ++ G++ +EKM
Sbjct: 189 ALFLRCRAQEVVPGGRMVLTILGRRSE-DRASTECCLIWQLLAMALNQMVSEGLIEEEKM 247
Query: 233 -------YNPTPKELEGIIQRNGNFTIERME----------KMTNPKQQVLCSASDLAVA 275
Y P+P E+E I + G+F I+ +E K + V ++A
Sbjct: 248 DKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARC 307
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENIS 309
MRAV E L+ +HFG+ ++ +F+ + E +S
Sbjct: 308 MRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 174/349 (49%), Gaps = 57/349 (16%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPN---TFRIADFGCSTGPNT 57
M GG+G SYA NSAY + + ++ V +L +PN ++AD GC++GPNT
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADLGCASGPNT 68
Query: 58 FIAVQNIIDSVELKFQHECPSAIE---FQVFFNDHSDNDFNTLFKSLP------------ 102
+ V++I+ S++ K E + +E Q+F ND NDFN++FK LP
Sbjct: 69 LLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGR 127
Query: 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQTRR 155
+ S +PGSFYS LFP+ S+HF+HS Y L WLS+VP + +GSI + +
Sbjct: 128 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNKGSIYSSK 187
Query: 156 FVN-EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL-VNNAAGSFYNT 213
V +AY QF DF TFL ++EL G +++ + G+ L NA
Sbjct: 188 ASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHG--RMLLTCICKGVELDARNAIDLLEMA 245
Query: 214 FGSCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVL 266
+VE G L +EK+ Y P+ +E++ I++ G+F I +E +VL
Sbjct: 246 INDLVVE----GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETF-----KVL 296
Query: 267 -----------CSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKA 304
A +A ++RAVYE ++ HFG+ + IF+ FA A
Sbjct: 297 YDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHA 345
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 164/349 (46%), Gaps = 51/349 (14%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD--LGTNAVPNTFRIADFGCSTGPNTF 58
M GG G SYA+NS Q++ + + + + L ++A P F D GCS+G NT
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTV 68
Query: 59 IAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------------- 103
+ I+ + +F EF FF+D NDFNTLF+ LP
Sbjct: 69 HIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG 128
Query: 104 SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRR-------- 155
+RSY+ AGVPGSFY LFP ++ F HS+++LHWLS+VP+ S+ RR
Sbjct: 129 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPE------SVTDRRSAAYNRGR 182
Query: 156 -FVNEVME----AYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSF 210
F++ E AY QF D FL RA E+ GG LV P AG
Sbjct: 183 VFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLL 242
Query: 211 YNT-FGSCLVELTKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPK 262
+ T F +L + G+++ EK +Y P+ ++ + ++ NG+F I+++
Sbjct: 243 FGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGS 302
Query: 263 QQVLCSASD-------LAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKA 304
V+ D A + R+V LV+ H G+E +K+F+ ++A
Sbjct: 303 PLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRA 351
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 171/358 (47%), Gaps = 63/358 (17%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDP--RTAVTDLGTNAVPN---TFRIADFGCSTGP 55
M GG+G SYA NS+Y ++++R P + +L +PN F++ D GC++GP
Sbjct: 9 MNGGEGDTSYAKNSSYN---LFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGP 65
Query: 56 NTFIAVQNIIDSVELKFQHECPSAIE---FQVFFNDHSDNDFNTLFKSLP---------- 102
NTF V++I+ S++ K E + +E Q+F ND NDFN++FK LP
Sbjct: 66 NTFSTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN 124
Query: 103 --QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQT 153
+ S +PGSFYS LFP+ S+HF+HS Y LHWLS+VP + +G I +
Sbjct: 125 GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYS 184
Query: 154 RRFVN-EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYN 212
+ + +AY QF DF TFL ++EL+ G L D N+ +
Sbjct: 185 SKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSM-----D 239
Query: 213 TFGSCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNP---- 261
+ +L G L +EK+ Y P+ +E++ I++ G+F I +E P
Sbjct: 240 LLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAG 299
Query: 262 -----------KQQVLCS----ASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKA 304
V C A+ +A +R++YE ++ HFG+ + + + A A
Sbjct: 300 FSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNA 357
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 178 TRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLV-----ELTKMGILSKEKM 232
T +L+P G + PDGIP+ ++ S N FG + EL MG+ +
Sbjct: 150 TVDHKLLPVGQTVFITIETPDGIPVKRDSKSS-QNQFGILTLSWNIPELVNMGVWKIKAY 208
Query: 233 YNPTPKEL 240
Y +P+++
Sbjct: 209 YEDSPQQV 216
>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
Length = 138
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 151 IQTRR-----FVNEVMEAYAAQFNNDFQTFLNTRAQEL 183
I+TRR F+N + + FN DF+ FL +A EL
Sbjct: 91 IETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWEL 128
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 141 VPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200
+P G + +Q R + + AY Q NN+ Q N +E +PG V D
Sbjct: 427 IPDKPGYDAVLQNRMLKDGKLNAYWVQVNNNMQAAANL-MEEGLPGYRNPANFIVVSDAY 485
Query: 201 PLVNNAAGSF 210
P V A
Sbjct: 486 PTVTALAADL 495
>pdb|1GGP|A Chain A, Crystal Structure Of Trichosanthes Kirilowii Lectin-1 And
Its Relation To The Type 2 Ribosome Inactivating
Proteins
Length = 234
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 104 SRSYYAAGVPGSFYSSLFPKSSLH 127
S SY+ A PGS S LF +SS H
Sbjct: 69 SNSYFHAAAPGSSLSHLFSRSSQH 92
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 141 VPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200
+P G + +Q R + + AY Q NN+ Q N +E +PG V D
Sbjct: 427 IPDKPGYDAVLQNRMLKDGKLNAYWVQVNNNMQAAANL-MEEGLPGYRNPANFIVVSDAY 485
Query: 201 PLVNNAAGSF 210
P V A
Sbjct: 486 PTVTALAADL 495
>pdb|3Q4F|C Chain C, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|D Chain D, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|G Chain G, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|H Chain H, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
Length = 186
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 227 LSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKE 286
SKE Y K L+ + R G+F +E++E ++++C D +A E L KE
Sbjct: 117 FSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKE 176
Query: 287 H 287
+
Sbjct: 177 N 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,741,131
Number of Sequences: 62578
Number of extensions: 397944
Number of successful extensions: 1069
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 16
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)