Query 037735
Match_columns 329
No_of_seqs 147 out of 593
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1.2E-87 2.6E-92 653.3 34.6 325 1-327 21-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 7.3E-82 1.6E-86 608.1 25.7 300 28-329 1-334 (334)
3 PRK10258 biotin biosynthesis p 99.8 6.7E-18 1.5E-22 156.2 17.2 210 7-301 17-231 (251)
4 TIGR02072 BioC biotin biosynth 99.7 1.2E-15 2.6E-20 138.2 19.0 217 6-305 5-223 (240)
5 PRK01683 trans-aconitate 2-met 99.7 3.3E-15 7.2E-20 138.6 20.2 247 7-328 6-256 (258)
6 PRK14103 trans-aconitate 2-met 99.7 4.2E-15 9E-20 138.2 18.9 226 7-308 4-232 (255)
7 PLN02233 ubiquinone biosynthes 99.4 1.5E-12 3.1E-17 122.0 14.4 161 42-257 73-248 (261)
8 COG2226 UbiE Methylase involve 99.4 1.3E-12 2.9E-17 120.5 13.0 160 42-257 51-224 (238)
9 TIGR02752 MenG_heptapren 2-hep 99.4 4.7E-12 1E-16 115.4 13.1 167 42-258 45-219 (231)
10 COG4106 Tam Trans-aconitate me 99.4 1.4E-11 3E-16 111.1 15.0 215 41-328 29-255 (257)
11 PTZ00098 phosphoethanolamine N 99.3 1E-10 2.2E-15 109.8 18.8 195 41-305 51-246 (263)
12 PLN02244 tocopherol O-methyltr 99.3 3.7E-11 8E-16 116.7 15.9 180 12-258 93-279 (340)
13 PF01209 Ubie_methyltran: ubiE 99.3 1.3E-12 2.7E-17 120.7 5.2 159 41-257 46-220 (233)
14 PLN02336 phosphoethanolamine N 99.3 1.7E-10 3.6E-15 116.5 20.3 186 42-306 266-459 (475)
15 PF08241 Methyltransf_11: Meth 99.3 9.9E-12 2.1E-16 96.1 7.8 95 47-191 1-95 (95)
16 PF13489 Methyltransf_23: Meth 99.3 5.3E-12 1.1E-16 107.4 5.1 136 41-254 21-160 (161)
17 PRK08317 hypothetical protein; 99.2 2.6E-09 5.5E-14 96.5 21.6 220 41-329 18-240 (241)
18 TIGR00740 methyltransferase, p 99.2 1.1E-10 2.3E-15 107.5 10.2 153 42-251 53-221 (239)
19 PRK11705 cyclopropane fatty ac 99.1 5E-09 1.1E-13 103.4 20.5 147 42-258 167-313 (383)
20 PRK11036 putative S-adenosyl-L 99.1 4.6E-10 1E-14 104.4 11.6 155 41-257 43-207 (255)
21 PRK00216 ubiE ubiquinone/menaq 99.1 1.5E-09 3.3E-14 98.4 14.7 160 42-259 51-227 (239)
22 PLN02490 MPBQ/MSBQ methyltrans 99.1 5.6E-10 1.2E-14 108.4 12.5 150 42-263 113-262 (340)
23 PLN02396 hexaprenyldihydroxybe 99.1 5.3E-10 1.1E-14 107.9 12.0 154 42-257 131-289 (322)
24 PRK15068 tRNA mo(5)U34 methylt 99.1 6.9E-10 1.5E-14 107.1 11.7 149 43-258 123-275 (322)
25 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 3.8E-09 8.3E-14 94.8 15.5 159 42-258 39-211 (223)
26 PRK15451 tRNA cmo(5)U34 methyl 99.1 9.8E-10 2.1E-14 101.9 11.8 107 41-194 55-165 (247)
27 KOG2940 Predicted methyltransf 99.1 9.3E-10 2E-14 100.2 10.8 199 42-306 72-278 (325)
28 PRK05785 hypothetical protein; 99.1 2.3E-09 4.9E-14 98.5 13.4 142 43-250 52-206 (226)
29 smart00828 PKS_MT Methyltransf 99.0 6.2E-09 1.3E-13 94.4 15.4 143 45-261 2-148 (224)
30 PRK11873 arsM arsenite S-adeno 99.0 3E-09 6.4E-14 99.7 12.7 152 42-258 77-231 (272)
31 PRK06202 hypothetical protein; 99.0 6.3E-09 1.4E-13 95.3 14.4 161 41-259 59-224 (232)
32 TIGR00452 methyltransferase, p 99.0 2.5E-09 5.4E-14 102.9 11.3 151 42-258 121-274 (314)
33 PRK11207 tellurite resistance 99.0 2.1E-09 4.6E-14 96.4 9.5 137 42-257 30-170 (197)
34 TIGR00477 tehB tellurite resis 98.9 5.2E-09 1.1E-13 93.8 10.0 138 42-257 30-169 (195)
35 KOG1540 Ubiquinone biosynthesi 98.9 8.5E-09 1.9E-13 95.3 9.9 173 40-256 98-281 (296)
36 KOG1541 Predicted protein carb 98.9 7.9E-09 1.7E-13 93.7 9.2 140 8-197 21-164 (270)
37 PRK11088 rrmA 23S rRNA methylt 98.9 1.7E-08 3.7E-13 94.9 11.4 102 42-198 85-186 (272)
38 PF08242 Methyltransf_12: Meth 98.9 2.5E-09 5.5E-14 84.6 4.7 96 47-189 1-99 (99)
39 PF13847 Methyltransf_31: Meth 98.8 8.1E-09 1.8E-13 88.4 7.4 105 42-195 3-112 (152)
40 PRK12335 tellurite resistance 98.8 2.4E-08 5.1E-13 94.7 10.7 137 43-257 121-259 (287)
41 PF02353 CMAS: Mycolic acid cy 98.8 3.3E-07 7.1E-12 86.7 17.3 170 42-285 62-235 (273)
42 PRK00121 trmB tRNA (guanine-N( 98.8 1.3E-08 2.9E-13 91.7 7.3 141 16-194 14-157 (202)
43 PF12847 Methyltransf_18: Meth 98.8 1.8E-08 3.9E-13 81.0 6.8 104 43-193 2-111 (112)
44 PRK06922 hypothetical protein; 98.8 2.4E-08 5.2E-13 103.5 9.0 113 42-193 418-537 (677)
45 COG2230 Cfa Cyclopropane fatty 98.7 5.9E-07 1.3E-11 85.0 17.2 221 15-328 55-283 (283)
46 TIGR01983 UbiG ubiquinone bios 98.7 2.4E-07 5.3E-12 83.7 13.6 153 42-258 45-204 (224)
47 KOG3010 Methyltransferase [Gen 98.7 2.4E-07 5.1E-12 85.2 13.2 191 43-302 34-238 (261)
48 TIGR03587 Pse_Me-ase pseudamin 98.7 1.4E-07 3E-12 85.4 10.3 90 24-139 30-119 (204)
49 PRK05134 bifunctional 3-demeth 98.7 5.8E-07 1.3E-11 82.0 14.1 154 42-258 48-206 (233)
50 TIGR02716 C20_methyl_CrtF C-20 98.6 3.7E-07 8E-12 87.2 12.8 153 41-254 148-303 (306)
51 PLN02336 phosphoethanolamine N 98.6 6.1E-08 1.3E-12 97.9 7.8 102 43-193 38-142 (475)
52 smart00138 MeTrc Methyltransfe 98.6 1.9E-07 4.1E-12 87.8 10.1 114 41-193 98-242 (264)
53 PRK11188 rrmJ 23S rRNA methylt 98.6 3.9E-07 8.4E-12 82.8 11.7 111 43-198 52-170 (209)
54 PF13649 Methyltransf_25: Meth 98.6 8.5E-08 1.8E-12 76.4 5.4 98 46-187 1-101 (101)
55 TIGR02021 BchM-ChlM magnesium 98.6 6.6E-07 1.4E-11 81.1 11.8 150 42-259 55-208 (219)
56 TIGR02081 metW methionine bios 98.6 5.7E-07 1.2E-11 80.2 10.8 142 43-258 14-168 (194)
57 TIGR03438 probable methyltrans 98.6 4.6E-07 9.9E-12 86.7 10.8 114 42-198 63-182 (301)
58 KOG2361 Predicted methyltransf 98.5 4.6E-07 9.9E-12 83.3 9.5 173 25-257 54-237 (264)
59 TIGR00091 tRNA (guanine-N(7)-) 98.5 1.8E-07 3.9E-12 83.7 6.6 114 42-193 16-132 (194)
60 TIGR03840 TMPT_Se_Te thiopurin 98.5 2.8E-06 6.1E-11 77.5 14.2 140 42-259 34-189 (213)
61 PF03848 TehB: Tellurite resis 98.5 2.9E-07 6.3E-12 82.7 6.9 140 42-257 30-169 (192)
62 TIGR02469 CbiT precorrin-6Y C5 98.4 1.1E-06 2.3E-11 71.4 8.7 100 43-194 20-123 (124)
63 TIGR00537 hemK_rel_arch HemK-r 98.4 3.2E-06 6.9E-11 74.4 12.0 121 42-195 19-142 (179)
64 PLN02585 magnesium protoporphy 98.4 5.3E-06 1.1E-10 80.0 13.7 150 42-259 144-301 (315)
65 PTZ00146 fibrillarin; Provisio 98.4 6.7E-06 1.5E-10 78.3 14.1 131 10-194 107-238 (293)
66 PRK04266 fibrillarin; Provisio 98.4 3.6E-06 7.8E-11 77.5 11.2 108 42-197 72-180 (226)
67 PRK09489 rsmC 16S ribosomal RN 98.3 8.8E-07 1.9E-11 86.3 7.0 105 43-193 197-303 (342)
68 KOG1270 Methyltransferases [Co 98.3 2.4E-06 5.2E-11 79.5 8.9 149 44-256 91-248 (282)
69 PRK15001 SAM-dependent 23S rib 98.3 1.8E-06 3.9E-11 85.2 8.3 105 44-193 230-340 (378)
70 TIGR00138 gidB 16S rRNA methyl 98.3 3.1E-06 6.7E-11 75.2 9.0 97 43-193 43-142 (181)
71 PF05401 NodS: Nodulation prot 98.3 2E-06 4.4E-11 77.1 7.5 105 41-194 42-147 (201)
72 PF08003 Methyltransf_9: Prote 98.3 4.6E-06 1E-10 79.4 10.3 146 42-256 115-266 (315)
73 PRK13255 thiopurine S-methyltr 98.3 1.5E-05 3.3E-10 72.9 13.4 139 42-258 37-191 (218)
74 PF05175 MTS: Methyltransferas 98.3 4E-06 8.7E-11 73.4 8.7 108 42-193 31-140 (170)
75 PHA03411 putative methyltransf 98.3 8E-06 1.7E-10 77.1 10.9 119 43-197 65-187 (279)
76 PRK13944 protein-L-isoaspartat 98.2 5.4E-06 1.2E-10 74.8 9.1 80 42-138 72-155 (205)
77 PRK00107 gidB 16S rRNA methylt 98.2 3.2E-06 6.9E-11 75.7 7.1 98 42-193 45-145 (187)
78 TIGR00080 pimt protein-L-isoas 98.2 4.5E-06 9.8E-11 75.7 8.2 98 42-193 77-177 (215)
79 PRK07580 Mg-protoporphyrin IX 98.2 1.9E-05 4.1E-10 71.6 12.3 147 42-260 63-217 (230)
80 COG2227 UbiG 2-polyprenyl-3-me 98.2 2.1E-06 4.5E-11 79.1 5.8 153 42-257 59-215 (243)
81 PRK08287 cobalt-precorrin-6Y C 98.2 5.3E-06 1.2E-10 73.4 8.2 100 42-195 31-133 (187)
82 PRK14121 tRNA (guanine-N(7)-)- 98.2 4.2E-06 9.2E-11 82.6 8.2 110 43-193 123-235 (390)
83 cd02440 AdoMet_MTases S-adenos 98.2 4.4E-06 9.6E-11 63.7 6.5 99 45-192 1-103 (107)
84 PRK13942 protein-L-isoaspartat 98.2 7.4E-06 1.6E-10 74.4 8.4 79 42-137 76-157 (212)
85 TIGR00438 rrmJ cell division p 98.2 7.4E-06 1.6E-10 72.7 8.1 105 42-195 32-148 (188)
86 PRK00312 pcm protein-L-isoaspa 98.1 1E-05 2.3E-10 73.0 8.4 97 41-194 77-176 (212)
87 TIGR03534 RF_mod_PrmC protein- 98.1 7.9E-06 1.7E-10 74.9 7.7 123 42-193 87-217 (251)
88 KOG4300 Predicted methyltransf 98.1 1.4E-05 3.1E-10 72.2 8.8 153 43-260 77-235 (252)
89 PF05148 Methyltransf_8: Hypot 98.1 8.7E-06 1.9E-10 73.8 7.0 116 41-258 71-186 (219)
90 PF00891 Methyltransf_2: O-met 98.1 3.2E-05 6.9E-10 71.1 10.9 105 41-199 99-205 (241)
91 PRK00517 prmA ribosomal protei 98.0 4E-05 8.7E-10 71.3 11.1 94 42-194 119-214 (250)
92 COG4123 Predicted O-methyltran 98.0 1.9E-05 4.2E-10 73.4 8.2 124 41-193 43-170 (248)
93 PLN02232 ubiquinone biosynthes 98.0 1.3E-05 2.8E-10 69.7 6.6 103 115-256 34-146 (160)
94 TIGR00406 prmA ribosomal prote 98.0 2.3E-05 5E-10 74.5 7.8 100 43-197 160-263 (288)
95 PLN03075 nicotianamine synthas 98.0 5E-05 1.1E-09 72.6 9.9 105 42-193 123-233 (296)
96 PF03141 Methyltransf_29: Puta 97.9 1.8E-05 4E-10 79.6 7.2 104 41-197 116-223 (506)
97 COG4976 Predicted methyltransf 97.9 2.2E-05 4.8E-10 72.0 6.2 143 42-260 125-268 (287)
98 PRK14967 putative methyltransf 97.9 4E-05 8.7E-10 69.9 7.8 123 43-195 37-161 (223)
99 TIGR00563 rsmB ribosomal RNA s 97.9 7.8E-05 1.7E-09 74.7 10.5 129 42-197 238-372 (426)
100 PRK14904 16S rRNA methyltransf 97.9 6.7E-05 1.5E-09 75.6 10.0 124 43-197 251-381 (445)
101 PRK14903 16S rRNA methyltransf 97.9 5E-05 1.1E-09 76.3 8.9 128 42-197 237-370 (431)
102 PF06080 DUF938: Protein of un 97.9 5.1E-05 1.1E-09 68.7 7.8 157 45-258 28-193 (204)
103 PRK14968 putative methyltransf 97.9 0.00016 3.4E-09 63.1 10.7 119 43-193 24-148 (188)
104 KOG3045 Predicted RNA methylas 97.8 5.2E-05 1.1E-09 70.6 7.4 86 41-193 179-264 (325)
105 PRK10901 16S rRNA methyltransf 97.8 0.00016 3.5E-09 72.4 10.8 126 42-195 244-374 (427)
106 PRK00377 cbiT cobalt-precorrin 97.8 9.1E-05 2E-09 66.3 7.9 102 42-194 40-146 (198)
107 PRK14902 16S rRNA methyltransf 97.8 0.00014 3.1E-09 73.1 10.2 123 43-195 251-381 (444)
108 PF13659 Methyltransf_26: Meth 97.7 6.2E-05 1.3E-09 60.8 5.9 109 44-194 2-116 (117)
109 PRK00811 spermidine synthase; 97.7 0.00014 3E-09 69.1 8.2 109 41-193 75-191 (283)
110 TIGR03533 L3_gln_methyl protei 97.7 0.00016 3.6E-09 68.6 8.6 121 42-193 121-251 (284)
111 PF07021 MetW: Methionine bios 97.7 0.00016 3.4E-09 64.8 7.7 142 43-259 14-169 (193)
112 PRK09328 N5-glutamine S-adenos 97.6 0.00034 7.3E-09 65.2 9.9 123 42-193 108-238 (275)
113 TIGR00536 hemK_fam HemK family 97.6 0.00022 4.8E-09 67.5 8.5 121 44-193 116-244 (284)
114 TIGR01177 conserved hypothetic 97.6 0.00018 3.9E-09 69.6 7.7 113 42-196 182-297 (329)
115 PRK14901 16S rRNA methyltransf 97.6 0.00041 8.8E-09 69.7 10.2 126 42-196 252-387 (434)
116 PRK14966 unknown domain/N5-glu 97.6 0.00033 7.2E-09 69.9 9.4 120 44-193 253-381 (423)
117 PF02390 Methyltransf_4: Putat 97.6 0.00019 4E-09 64.6 6.8 111 45-193 20-133 (195)
118 PRK11805 N5-glutamine S-adenos 97.6 0.00037 7.9E-09 67.0 9.3 114 44-193 135-263 (307)
119 PRK04457 spermidine synthase; 97.6 0.00025 5.4E-09 66.6 7.9 113 41-197 65-181 (262)
120 TIGR03704 PrmC_rel_meth putati 97.5 0.00069 1.5E-08 63.2 9.7 121 43-193 87-216 (251)
121 PRK07402 precorrin-6B methylas 97.5 0.0007 1.5E-08 60.4 9.0 43 42-99 40-82 (196)
122 PRK03612 spermidine synthase; 97.4 0.00075 1.6E-08 69.5 9.9 150 41-245 296-457 (521)
123 PRK01544 bifunctional N5-gluta 97.4 0.00043 9.4E-09 71.0 7.6 120 43-193 139-269 (506)
124 TIGR00446 nop2p NOL1/NOP2/sun 97.4 0.00096 2.1E-08 62.6 9.3 125 42-196 71-202 (264)
125 TIGR00417 speE spermidine synt 97.4 0.00043 9.3E-09 65.2 6.8 108 41-192 71-185 (270)
126 PF05891 Methyltransf_PK: AdoM 97.3 0.00026 5.6E-09 64.6 4.7 142 41-258 54-202 (218)
127 PRK13943 protein-L-isoaspartat 97.3 0.00072 1.6E-08 65.5 7.7 78 42-136 80-160 (322)
128 PF03291 Pox_MCEL: mRNA cappin 97.3 0.0011 2.3E-08 64.6 8.3 109 42-195 62-188 (331)
129 COG2264 PrmA Ribosomal protein 97.2 0.0017 3.6E-08 62.2 9.4 99 41-193 161-263 (300)
130 smart00650 rADc Ribosomal RNA 97.2 0.00058 1.3E-08 59.5 5.3 75 43-137 14-89 (169)
131 COG2813 RsmC 16S RNA G1207 met 97.2 0.0021 4.5E-08 61.4 9.3 105 44-195 160-268 (300)
132 PF01135 PCMT: Protein-L-isoas 97.2 0.00063 1.4E-08 62.0 5.5 99 42-194 72-173 (209)
133 COG0220 Predicted S-adenosylme 97.2 0.0015 3.2E-08 60.3 7.8 112 44-193 50-164 (227)
134 COG2518 Pcm Protein-L-isoaspar 97.1 0.0014 3.1E-08 59.5 6.8 22 41-62 71-92 (209)
135 PRK13256 thiopurine S-methyltr 97.1 0.012 2.6E-07 54.3 13.0 137 42-257 43-197 (226)
136 PRK01544 bifunctional N5-gluta 97.1 0.0025 5.4E-08 65.4 9.1 138 15-193 323-462 (506)
137 PLN02366 spermidine synthase 97.0 0.0025 5.3E-08 61.5 8.4 110 41-193 90-206 (308)
138 PRK01581 speE spermidine synth 97.0 0.0024 5.2E-08 62.8 8.2 110 41-193 149-268 (374)
139 COG2890 HemK Methylase of poly 97.0 0.0017 3.8E-08 61.6 6.6 112 45-193 113-238 (280)
140 KOG3178 Hydroxyindole-O-methyl 96.9 0.021 4.6E-07 55.5 13.8 189 2-257 139-330 (342)
141 PLN02781 Probable caffeoyl-CoA 96.9 0.0029 6.4E-08 58.4 7.1 105 41-193 67-178 (234)
142 PHA03412 putative methyltransf 96.8 0.0027 5.9E-08 58.9 6.5 72 43-132 50-121 (241)
143 COG2242 CobL Precorrin-6B meth 96.8 0.0044 9.5E-08 55.4 7.0 104 41-196 33-138 (187)
144 PF06325 PrmA: Ribosomal prote 96.8 0.0054 1.2E-07 58.7 8.1 95 43-195 162-261 (295)
145 PF12147 Methyltransf_20: Puta 96.7 0.02 4.3E-07 54.6 11.5 169 23-254 118-295 (311)
146 KOG1331 Predicted methyltransf 96.7 0.002 4.4E-08 60.9 4.5 133 10-200 18-150 (293)
147 PF05724 TPMT: Thiopurine S-me 96.7 0.03 6.5E-07 51.3 12.1 139 41-258 36-191 (218)
148 TIGR03439 methyl_EasF probable 96.6 0.0068 1.5E-07 58.7 7.7 118 41-198 75-202 (319)
149 PLN02672 methionine S-methyltr 96.5 0.0076 1.7E-07 66.7 8.4 116 44-195 120-280 (1082)
150 PRK13168 rumA 23S rRNA m(5)U19 96.5 0.0053 1.1E-07 61.9 6.6 105 43-176 298-413 (443)
151 PRK10611 chemotaxis methyltran 96.4 0.0071 1.5E-07 57.7 6.3 116 42-193 115-262 (287)
152 KOG1975 mRNA cap methyltransfe 96.4 0.0044 9.5E-08 59.7 4.8 109 42-195 117-239 (389)
153 PF10294 Methyltransf_16: Puta 96.4 0.0059 1.3E-07 53.7 5.3 110 41-197 44-160 (173)
154 PRK15128 23S rRNA m(5)C1962 me 96.3 0.024 5.2E-07 56.5 10.0 113 43-193 221-339 (396)
155 PF11968 DUF3321: Putative met 96.3 0.051 1.1E-06 49.7 11.2 123 42-257 51-181 (219)
156 PRK00274 ksgA 16S ribosomal RN 96.3 0.0046 1E-07 58.3 4.6 67 8-101 18-84 (272)
157 PF01739 CheR: CheR methyltran 96.3 0.0047 1E-07 55.7 4.2 118 41-193 30-175 (196)
158 PF01728 FtsJ: FtsJ-like methy 96.2 0.024 5.2E-07 49.7 8.1 114 42-197 23-143 (181)
159 PRK14896 ksgA 16S ribosomal RN 96.1 0.008 1.7E-07 56.2 5.2 97 9-137 6-103 (258)
160 KOG1499 Protein arginine N-met 96.1 0.0054 1.2E-07 59.5 3.9 103 42-190 60-164 (346)
161 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.026 5.6E-07 60.3 8.8 113 43-193 539-656 (702)
162 COG1352 CheR Methylase of chem 95.9 0.061 1.3E-06 50.9 10.1 117 42-193 96-241 (268)
163 KOG2899 Predicted methyltransf 95.8 0.059 1.3E-06 50.2 9.1 85 122-251 163-251 (288)
164 PRK03522 rumB 23S rRNA methylu 95.8 0.036 7.8E-07 53.3 8.1 70 43-132 174-247 (315)
165 KOG3191 Predicted N6-DNA-methy 95.8 0.065 1.4E-06 47.9 8.8 140 23-198 27-173 (209)
166 KOG2904 Predicted methyltransf 95.6 0.094 2E-06 49.7 9.5 127 43-199 149-291 (328)
167 PF05185 PRMT5: PRMT5 arginine 95.5 0.026 5.7E-07 57.1 6.1 129 12-190 162-294 (448)
168 TIGR00478 tly hemolysin TlyA f 95.5 0.1 2.2E-06 48.2 9.5 39 42-96 75-113 (228)
169 COG0500 SmtA SAM-dependent met 95.3 0.083 1.8E-06 41.3 7.4 103 46-199 52-161 (257)
170 PRK10909 rsmD 16S rRNA m(2)G96 95.3 0.036 7.8E-07 50.1 5.8 70 43-131 54-127 (199)
171 TIGR00755 ksgA dimethyladenosi 95.3 0.017 3.7E-07 53.7 3.8 74 42-137 29-106 (253)
172 KOG1500 Protein arginine N-met 95.1 0.072 1.6E-06 51.8 7.4 112 41-202 176-290 (517)
173 PF01596 Methyltransf_3: O-met 94.9 0.037 8.1E-07 50.2 4.8 105 42-194 45-156 (205)
174 TIGR00479 rumA 23S rRNA (uraci 94.9 0.1 2.2E-06 52.3 8.3 69 42-130 292-367 (431)
175 COG4122 Predicted O-methyltran 94.8 0.062 1.3E-06 49.3 5.9 105 41-195 58-168 (219)
176 PF04672 Methyltransf_19: S-ad 94.8 0.48 1E-05 44.8 11.8 174 24-263 52-243 (267)
177 PF05219 DREV: DREV methyltran 94.7 0.081 1.7E-06 49.7 6.5 97 42-195 94-190 (265)
178 COG2519 GCD14 tRNA(1-methylade 94.7 0.26 5.6E-06 46.2 9.7 99 42-195 94-197 (256)
179 PRK11933 yebU rRNA (cytosine-C 94.6 0.13 2.9E-06 52.4 8.1 126 42-196 113-245 (470)
180 PLN02476 O-methyltransferase 94.4 0.13 2.8E-06 48.9 7.3 39 41-93 117-155 (278)
181 PTZ00338 dimethyladenosine tra 94.2 0.026 5.7E-07 54.0 2.1 76 42-139 36-115 (294)
182 PLN02589 caffeoyl-CoA O-methyl 94.2 0.19 4.2E-06 46.9 7.8 37 41-91 78-114 (247)
183 PLN02823 spermine synthase 93.8 0.23 4.9E-06 48.6 7.8 111 41-193 102-220 (336)
184 PRK11727 23S rRNA mA1618 methy 93.6 0.11 2.3E-06 50.5 5.0 76 42-132 114-196 (321)
185 TIGR02987 met_A_Alw26 type II 93.6 0.6 1.3E-05 48.0 10.8 48 42-96 31-78 (524)
186 PF07942 N2227: N2227-like pro 93.2 2.1 4.6E-05 40.6 13.0 91 110-257 147-242 (270)
187 PF09243 Rsm22: Mitochondrial 93.2 1.2 2.6E-05 42.1 11.4 82 41-139 32-116 (274)
188 PRK04338 N(2),N(2)-dimethylgua 93.1 0.26 5.6E-06 49.0 6.9 71 6-100 30-100 (382)
189 PF08704 GCD14: tRNA methyltra 92.4 0.62 1.3E-05 43.6 8.1 100 42-195 40-148 (247)
190 COG1189 Predicted rRNA methyla 92.1 0.9 2E-05 42.2 8.6 143 40-258 77-225 (245)
191 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.7 0.26 5.7E-06 46.3 4.8 82 125-257 158-239 (256)
192 PF08123 DOT1: Histone methyla 91.0 1.3 2.9E-05 40.1 8.5 21 170-190 135-155 (205)
193 PF13679 Methyltransf_32: Meth 90.9 0.48 1E-05 40.0 5.2 57 22-91 7-63 (141)
194 PF02384 N6_Mtase: N-6 DNA Met 90.2 1.9 4.2E-05 40.9 9.3 128 41-194 45-184 (311)
195 KOG1661 Protein-L-isoaspartate 89.8 1.5 3.2E-05 40.3 7.6 19 43-61 83-101 (237)
196 COG0030 KsgA Dimethyladenosine 89.3 0.79 1.7E-05 43.2 5.7 52 43-98 31-94 (259)
197 PF06859 Bin3: Bicoid-interact 87.9 0.2 4.3E-06 41.1 0.6 43 126-193 2-44 (110)
198 COG0144 Sun tRNA and rRNA cyto 87.2 6.9 0.00015 38.4 11.0 129 42-197 156-292 (355)
199 KOG1269 SAM-dependent methyltr 87.1 1.2 2.6E-05 44.0 5.6 101 44-197 112-219 (364)
200 COG2263 Predicted RNA methylas 86.7 0.36 7.7E-06 43.4 1.6 39 42-96 45-83 (198)
201 PRK04148 hypothetical protein; 84.6 2.3 5.1E-05 36.1 5.5 35 42-93 16-51 (134)
202 COG2521 Predicted archaeal met 83.9 1.4 3E-05 41.1 4.1 55 112-194 190-246 (287)
203 COG3963 Phospholipid N-methylt 83.8 4.6 0.0001 35.9 7.0 108 43-198 49-161 (194)
204 PF00398 RrnaAD: Ribosomal RNA 83.2 3.3 7.2E-05 38.7 6.5 21 42-62 30-50 (262)
205 TIGR02085 meth_trns_rumB 23S r 81.3 1.6 3.5E-05 43.0 3.8 37 44-97 235-271 (374)
206 PF01189 Nol1_Nop2_Fmu: NOL1/N 80.9 3.7 8E-05 39.0 5.9 126 42-195 85-221 (283)
207 PRK00536 speE spermidine synth 80.8 7.6 0.00016 36.7 7.9 95 40-193 70-171 (262)
208 PF03141 Methyltransf_29: Puta 80.0 4.5 9.8E-05 41.5 6.4 130 3-191 332-465 (506)
209 COG4627 Uncharacterized protei 79.9 0.32 6.9E-06 42.5 -1.5 50 118-196 40-89 (185)
210 TIGR02143 trmA_only tRNA (urac 79.8 2.6 5.5E-05 41.4 4.6 40 44-100 199-238 (353)
211 KOG1271 Methyltransferases [Ge 79.2 2.1 4.6E-05 38.5 3.4 42 15-62 46-87 (227)
212 PRK00050 16S rRNA m(4)C1402 me 79.1 3.6 7.9E-05 39.5 5.3 45 43-101 20-64 (296)
213 KOG2798 Putative trehalase [Ca 79.0 68 0.0015 31.4 13.8 67 172-261 275-341 (369)
214 COG5459 Predicted rRNA methyla 78.6 10 0.00022 37.5 8.1 63 174-247 206-273 (484)
215 TIGR00095 RNA methyltransferas 78.5 4.7 0.0001 35.9 5.5 43 43-101 50-92 (189)
216 PRK05031 tRNA (uracil-5-)-meth 77.8 3.3 7.2E-05 40.7 4.7 40 44-100 208-247 (362)
217 PRK11760 putative 23S rRNA C24 76.4 7.8 0.00017 38.1 6.7 31 42-89 211-241 (357)
218 KOG3420 Predicted RNA methylas 76.1 1.6 3.5E-05 37.9 1.7 35 20-60 32-66 (185)
219 PRK11524 putative methyltransf 76.0 5.8 0.00013 37.5 5.7 22 172-193 59-80 (284)
220 KOG2198 tRNA cytosine-5-methyl 75.4 15 0.00032 36.4 8.3 134 41-197 154-300 (375)
221 PRK01747 mnmC bifunctional tRN 75.4 7.5 0.00016 41.2 6.9 24 41-64 56-79 (662)
222 PF07091 FmrO: Ribosomal RNA m 74.7 6.3 0.00014 37.0 5.3 94 25-141 89-187 (251)
223 PF01564 Spermine_synth: Sperm 71.6 21 0.00045 33.1 8.1 111 40-193 74-191 (246)
224 KOG1122 tRNA and rRNA cytosine 71.0 50 0.0011 33.5 10.9 130 40-197 239-375 (460)
225 PF02475 Met_10: Met-10+ like- 70.7 6.8 0.00015 35.4 4.5 95 42-190 101-199 (200)
226 PF09445 Methyltransf_15: RNA 70.5 2.5 5.4E-05 37.1 1.6 68 45-132 2-76 (163)
227 KOG4589 Cell division protein 70.3 7.8 0.00017 35.1 4.6 22 41-62 68-89 (232)
228 PF01269 Fibrillarin: Fibrilla 69.5 22 0.00049 32.9 7.6 105 42-196 73-181 (229)
229 PF03602 Cons_hypoth95: Conser 68.6 10 0.00023 33.6 5.2 108 42-197 42-157 (183)
230 TIGR01444 fkbM_fam methyltrans 66.7 5.3 0.00011 32.9 2.8 41 45-100 1-41 (143)
231 PF13578 Methyltransf_24: Meth 65.9 3.3 7.2E-05 32.6 1.3 18 47-64 1-18 (106)
232 COG1092 Predicted SAM-dependen 63.9 32 0.0007 34.4 8.1 115 43-195 218-338 (393)
233 PRK11783 rlmL 23S rRNA m(2)G24 63.8 54 0.0012 35.2 10.4 19 43-61 191-209 (702)
234 COG4262 Predicted spermidine s 63.4 34 0.00075 34.2 7.9 154 41-247 288-451 (508)
235 KOG3987 Uncharacterized conser 60.1 5.3 0.00011 36.8 1.6 100 40-196 110-210 (288)
236 KOG3115 Methyltransferase-like 57.8 5.1 0.00011 36.7 1.1 20 174-193 164-183 (249)
237 COG0421 SpeE Spermidine syntha 57.5 46 0.00099 31.8 7.6 109 40-192 74-189 (282)
238 PF07757 AdoMet_MTase: Predict 57.0 9.2 0.0002 31.4 2.4 22 41-62 57-78 (112)
239 COG4798 Predicted methyltransf 51.8 30 0.00066 31.6 5.0 149 43-258 49-206 (238)
240 COG1041 Predicted DNA modifica 51.6 85 0.0018 30.9 8.5 110 44-194 199-311 (347)
241 COG0293 FtsJ 23S rRNA methylas 49.7 38 0.00083 30.8 5.5 50 9-64 15-67 (205)
242 KOG2920 Predicted methyltransf 48.2 14 0.00031 35.2 2.5 35 23-61 100-135 (282)
243 PF04816 DUF633: Family of unk 46.2 17 0.00037 32.9 2.7 41 46-101 1-41 (205)
244 PF10672 Methyltrans_SAM: S-ad 45.3 8.9 0.00019 36.7 0.7 111 43-194 124-239 (286)
245 COG0357 GidB Predicted S-adeno 44.2 51 0.0011 30.2 5.4 33 43-90 68-100 (215)
246 TIGR00308 TRM1 tRNA(guanine-26 41.8 27 0.00059 34.6 3.5 76 6-101 14-89 (374)
247 PF01170 UPF0020: Putative RNA 40.1 57 0.0012 28.6 5.0 122 42-197 28-153 (179)
248 KOG1501 Arginine N-methyltrans 39.9 23 0.0005 36.1 2.7 22 41-62 65-86 (636)
249 TIGR00027 mthyl_TIGR00027 meth 39.8 3.2E+02 0.0069 25.5 11.6 71 172-254 176-247 (260)
250 PF02636 Methyltransf_28: Puta 37.7 26 0.00056 32.4 2.5 23 42-64 18-40 (252)
251 TIGR00006 S-adenosyl-methyltra 37.7 35 0.00075 33.0 3.4 26 170-195 217-242 (305)
252 KOG0820 Ribosomal RNA adenine 36.9 57 0.0012 31.3 4.6 23 41-63 57-79 (315)
253 PF05958 tRNA_U5-meth_tr: tRNA 36.5 35 0.00077 33.4 3.4 18 45-62 199-216 (352)
254 PRK00050 16S rRNA m(4)C1402 me 36.4 38 0.00081 32.6 3.4 29 168-196 211-239 (296)
255 COG0275 Predicted S-adenosylme 33.8 44 0.00096 32.4 3.4 28 169-196 220-247 (314)
256 KOG1663 O-methyltransferase [S 33.5 2.8E+02 0.0061 25.9 8.5 104 41-193 72-183 (237)
257 COG2821 MltA Membrane-bound ly 32.5 56 0.0012 32.5 4.0 35 219-253 224-266 (373)
258 PF03269 DUF268: Caenorhabditi 32.4 44 0.00095 29.6 2.9 22 176-197 94-116 (177)
259 COG2384 Predicted SAM-dependen 32.3 81 0.0017 29.2 4.7 45 44-103 18-62 (226)
260 PF05206 TRM13: Methyltransfer 31.5 69 0.0015 30.2 4.3 41 41-91 17-57 (259)
261 cd01842 SGNH_hydrolase_like_5 30.5 1.4E+02 0.003 26.8 5.7 63 115-196 39-102 (183)
262 PF01795 Methyltransf_5: MraW 29.9 39 0.00085 32.7 2.4 26 170-195 218-243 (310)
263 PF02527 GidB: rRNA small subu 29.1 61 0.0013 28.8 3.4 95 45-193 51-148 (184)
264 PF09597 IGR: IGR protein moti 29.0 44 0.00096 24.1 2.0 27 162-188 13-39 (57)
265 PF01555 N6_N4_Mtase: DNA meth 28.7 52 0.0011 28.7 2.9 25 170-194 33-57 (231)
266 COG1565 Uncharacterized conser 27.1 95 0.0021 30.8 4.5 25 40-64 75-99 (370)
267 PF05871 ESCRT-II: ESCRT-II co 26.5 1.1E+02 0.0023 26.1 4.2 36 211-246 63-105 (139)
268 TIGR00730 conserved hypothetic 26.4 84 0.0018 27.8 3.7 37 210-246 137-177 (178)
269 PHA03297 envelope glycoprotein 26.3 21 0.00045 30.9 -0.2 51 40-90 37-93 (185)
270 KOG4068 Uncharacterized conser 26.3 86 0.0019 27.5 3.6 35 211-245 68-109 (174)
271 KOG2352 Predicted spermine/spe 25.2 2.3E+02 0.0051 29.2 7.0 60 115-195 104-163 (482)
272 COG0742 N6-adenine-specific me 24.1 2.3E+02 0.0049 25.5 6.1 44 42-101 43-86 (187)
273 smart00400 ZnF_CHCC zinc finge 24.1 63 0.0014 22.5 2.0 21 44-64 22-42 (55)
274 PF11899 DUF3419: Protein of u 24.0 1.4E+02 0.0031 29.7 5.2 56 115-199 283-340 (380)
275 COG4076 Predicted RNA methylas 23.7 46 0.00099 30.4 1.5 20 44-63 34-53 (252)
276 PF02268 TFIIA_gamma_N: Transc 21.6 63 0.0014 22.7 1.5 21 211-231 12-32 (49)
277 PF10357 Kin17_mid: Domain of 21.4 76 0.0017 26.7 2.3 69 156-256 9-83 (127)
278 PRK11162 mltA murein transglyc 21.1 1.1E+02 0.0025 30.2 3.8 61 183-255 189-259 (355)
279 PF14904 FAM86: Family of unkn 20.9 79 0.0017 25.5 2.2 31 273-303 67-99 (100)
280 KOG2793 Putative N2,N2-dimethy 20.8 78 0.0017 29.7 2.5 33 42-90 86-118 (248)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.2e-87 Score=653.27 Aligned_cols=325 Identities=32% Similarity=0.563 Sum_probs=291.5
Q ss_pred CCCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCC-CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCC
Q 037735 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVP-NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSA 79 (329)
Q Consensus 1 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~-~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~ 79 (329)
|+||+|++||++||.+|+.++..++|+|+++|+++.....+ ++++|||||||+|+||+.+++.||++|+++|.+.+.+.
T Consensus 21 M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~ 100 (386)
T PLN02668 21 MKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDP 100 (386)
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCC
Confidence 99999999999999999999999999999999877432113 68999999999999999999999999999998876678
Q ss_pred ccceEEecCCCcchHHhhhhcCCCC----------------cceeeeccccccccccCCCCceeEEEeccceecccCCCC
Q 037735 80 IEFQVFFNDHSDNDFNTLFKSLPQS----------------RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK 143 (329)
Q Consensus 80 pe~~v~~nDLp~ndfn~lf~~l~~~----------------~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~ 143 (329)
||+|||+||||.||||++|++|++. ++||++|||||||+||||++|+||+||++||||||++|+
T Consensus 101 pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 101 PEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred CcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 8999999999999999999999742 249999999999999999999999999999999999998
Q ss_pred C--C-----CCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHH-HH
Q 037735 144 V--D-----GVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNT-FG 215 (329)
Q Consensus 144 ~--~-----~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~-l~ 215 (329)
. | ||||+||+++++|+|.+||++||++||..||++||+||+|||+|+++++||++.++......+.+|+. +.
T Consensus 181 ~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~ 260 (386)
T PLN02668 181 SVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 260 (386)
T ss_pred hhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHH
Confidence 7 2 79999999999999999999999999999999999999999999999999987665544335667777 99
Q ss_pred HHHHHHHhcCCcCCCc-------ccCCCHHHHHHHHHhCCceEEeEEEEeecCcc---ccc----ccHHHHhhhHhhhhh
Q 037735 216 SCLVELTKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQ---QVL----CSASDLAVAMRAVYE 281 (329)
Q Consensus 216 ~a~~~l~~eG~i~~~~-------~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~---~~~----~~~~~~~~~iRa~~e 281 (329)
++|++||.||+|++|+ +|+||++|++++|+++|+|+|+++|.++..|. +.+ ..+..+++++||+.|
T Consensus 261 ~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E 340 (386)
T PLN02668 261 DAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAG 340 (386)
T ss_pred HHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999875432 111 135679999999999
Q ss_pred hHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEE
Q 037735 282 GLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLK 327 (329)
Q Consensus 282 ~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~ 327 (329)
|++.+|||++++|+||+||+++++++.+.. .++.+..+++++|.
T Consensus 341 ~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~--~~~~~~~~~~~sL~ 384 (386)
T PLN02668 341 VLVDAHIGEELSNELFLRVERRATSHAKEL--LEKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHhh--cccCceEEEEEEEe
Confidence 999999999999999999999999988863 35667788888875
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=7.3e-82 Score=608.06 Aligned_cols=300 Identities=42% Similarity=0.741 Sum_probs=248.3
Q ss_pred HHHHHhhccc-CCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcC-CCCccceEEecCCCcchHHhhhhcCCCC-
Q 037735 28 PRTAVTDLGT-NAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHEC-PSAIEFQVFFNDHSDNDFNTLFKSLPQS- 104 (329)
Q Consensus 28 l~~ai~~i~~-~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~-~~~pe~~v~~nDLp~ndfn~lf~~l~~~- 104 (329)
|++||.++.. ...+++++|||||||+|+||+.+++.||++|+++|.+.+ .++||+||||||||.||||+||++|+..
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 3566666543 236789999999999999999999999999999998776 6789999999999999999999999865
Q ss_pred ------cceeeeccccccccccCCCCceeEEEeccceecccCCCCC--C-----CCccceeec-CCcHHHHHHHHHHHhh
Q 037735 105 ------RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKV--D-----GVEGSIQTR-RFVNEVMEAYAAQFNN 170 (329)
Q Consensus 105 ------~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~--~-----~n~g~i~~~-~~~~~~~~ay~~q~~~ 170 (329)
++||++|||||||+||||++|+||+||++||||||++|+. + ||||+||++ +++++|.+||++||++
T Consensus 81 ~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~ 160 (334)
T PF03492_consen 81 QSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQK 160 (334)
T ss_dssp HHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHH
T ss_pred hccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999988 4 899999999 7899999999999999
Q ss_pred cHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-------ccCCCHHHHHHH
Q 037735 171 DFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-------MYNPTPKELEGI 243 (329)
Q Consensus 171 D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-------~y~ps~eE~~~~ 243 (329)
||.+||++||+||+|||+|+++++|+++..+. +.+.+.+|++|+++|++||.||+|++++ +|+||.+|++++
T Consensus 161 D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~-~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~ 239 (334)
T PF03492_consen 161 DFSSFLKARAEELVPGGRMVLTFLGRDEEDPS-STGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAI 239 (334)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEE-STSSTT-STTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHH
T ss_pred HHHHHHHHhhheeccCcEEEEEEeeccccccc-cCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHH
Confidence 99999999999999999999999999985543 3456689999999999999999999999 999999999999
Q ss_pred HHhCCceEEeEEEEeecC-cccc---------cccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhhhhhh
Q 037735 244 IQRNGNFTIERMEKMTNP-KQQV---------LCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQ 313 (329)
Q Consensus 244 i~~~g~f~i~~~e~~~~~-~~~~---------~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~ 313 (329)
|+++|+|+|+++|.+... |... ..+++.+++++||++||++++|||++++|+||+||+++++++++.. .
T Consensus 240 I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~~~-~ 318 (334)
T PF03492_consen 240 IEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLEKE-K 318 (334)
T ss_dssp HHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT-H
T ss_pred HhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-h
Confidence 999999999999988633 2211 1257899999999999999999999999999999999999999865 3
Q ss_pred hcCCCceEEEEEEEeC
Q 037735 314 RVQDSMMDLFILLKRI 329 (329)
Q Consensus 314 ~~~~~~~~~~~~L~r~ 329 (329)
+..++.++++++|+||
T Consensus 319 ~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 319 SRNMKFVNIVVSLTRK 334 (334)
T ss_dssp TT-BEEEEEEEEEEE-
T ss_pred ccCCCcEEEEEEEeeC
Confidence 3457899999999997
No 3
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.78 E-value=6.7e-18 Score=156.21 Aligned_cols=210 Identities=13% Similarity=0.121 Sum_probs=150.4
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
+.+|++++.+|+.++..+...+. ..+..+|+|+|||+|.+|..+.. . ..+++.
T Consensus 17 a~~Y~~~~~~q~~~a~~l~~~l~----------~~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~ 69 (251)
T PRK10258 17 AAHYEQHAELQRQSADALLAMLP----------QRKFTHVLDAGCGPGWMSRYWRE--------R---------GSQVTA 69 (251)
T ss_pred HHhHhHHHHHHHHHHHHHHHhcC----------ccCCCeEEEeeCCCCHHHHHHHH--------c---------CCeEEE
Confidence 45899999999999999877665 13457899999999998876642 1 148999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+...+....-+..+. ..|+.+ ++..-.+|++++|+|+|+.++||+.++
T Consensus 70 ~D~s~~~l~~a~~~~~~--~~~~~~---d~~~~~~~~~~fD~V~s~~~l~~~~d~------------------------- 119 (251)
T PRK10258 70 LDLSPPMLAQARQKDAA--DHYLAG---DIESLPLATATFDLAWSNLAVQWCGNL------------------------- 119 (251)
T ss_pred EECCHHHHHHHHhhCCC--CCEEEc---CcccCcCCCCcEEEEEECchhhhcCCH-------------------------
Confidence 99988776655444332 234444 564445889999999999999997654
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHh
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQR 246 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~ 246 (329)
..+|....+.|+|||.+++++++.++. ..+.++|..+-..+ ...-+++.+|+.+.+..
T Consensus 120 ------~~~l~~~~~~Lk~gG~l~~~~~~~~~~------------~el~~~~~~~~~~~----~~~~~~~~~~l~~~l~~ 177 (251)
T PRK10258 120 ------STALRELYRVVRPGGVVAFTTLVQGSL------------PELHQAWQAVDERP----HANRFLPPDAIEQALNG 177 (251)
T ss_pred ------HHHHHHHHHHcCCCeEEEEEeCCCCch------------HHHHHHHHHhccCC----ccccCCCHHHHHHHHHh
Confidence 377999999999999999999997752 34566666542111 01556799999999986
Q ss_pred CCceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHH-----hhhcChHHHHHHHHHHH
Q 037735 247 NGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLV-----KEHFGDEFVDKIFNHFA 301 (329)
Q Consensus 247 ~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~-----~~~~g~~~~d~~f~ry~ 301 (329)
.+ +++ ..+.+.. .|+ ++..+.+++|.++.... ...+++..+.++.+.|.
T Consensus 178 ~~-~~~-~~~~~~~-~f~---~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (251)
T PRK10258 178 WR-YQH-HIQPITL-WFD---DALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWP 231 (251)
T ss_pred CC-cee-eeeEEEE-ECC---CHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhcc
Confidence 53 554 3333333 244 48999999999887543 34577777777766663
No 4
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=1.2e-15 Score=138.23 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=157.1
Q ss_pred CCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEE
Q 037735 6 GAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVF 85 (329)
Q Consensus 6 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~ 85 (329)
...+|++.+..|+.+...+.+.+.... ..++.+|+|+|||+|.++..+.. . .|..+++
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~--------~-------~~~~~~~ 62 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLK--------R-------FPQAEFI 62 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHH--------h-------CCCCcEE
Confidence 457899999999999999888887431 13457899999999998887764 2 2345799
Q ss_pred ecCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH
Q 037735 86 FNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA 165 (329)
Q Consensus 86 ~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~ 165 (329)
..|+..++.+...+.+++ +..|+.+ ++.+..+|++++|+++++.++||+.+.
T Consensus 63 ~~D~~~~~~~~~~~~~~~-~~~~~~~---d~~~~~~~~~~fD~vi~~~~l~~~~~~------------------------ 114 (240)
T TIGR02072 63 ALDISAGMLAQAKTKLSE-NVQFICG---DAEKLPLEDSSFDLIVSNLALQWCDDL------------------------ 114 (240)
T ss_pred EEeChHHHHHHHHHhcCC-CCeEEec---chhhCCCCCCceeEEEEhhhhhhccCH------------------------
Confidence 999988777666655543 2234443 565666889999999999999997543
Q ss_pred HHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHH
Q 037735 166 AQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQ 245 (329)
Q Consensus 166 ~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~ 245 (329)
..+|....+.|+|||.++++.++.++. ..+..++.. .+ ..+++.+++.+++.
T Consensus 115 -------~~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~---~~------~~~~~~~~~~~~l~ 166 (240)
T TIGR02072 115 -------SQALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQ---HG------LRYLSLDELKALLK 166 (240)
T ss_pred -------HHHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHH---hc------cCCCCHHHHHHHHH
Confidence 378999999999999999998776542 123333322 23 56789999999998
Q ss_pred hCCceEEeEEEEeecC-cccccccHHHHhhhHhhhhhhHH-hhhcChHHHHHHHHHHHHHHH
Q 037735 246 RNGNFTIERMEKMTNP-KQQVLCSASDLAVAMRAVYEGLV-KEHFGDEFVDKIFNHFATKAE 305 (329)
Q Consensus 246 ~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~iRa~~e~~~-~~~~g~~~~d~~f~ry~~~~~ 305 (329)
.. |....++..... .+. ++..+.+++|..+.... ...++++...++.+.|.+.+.
T Consensus 167 ~~--f~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 167 NS--FELLTLEEELITLSFD---DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ 223 (240)
T ss_pred Hh--cCCcEEEEEEEEEeCC---CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence 76 877666543222 233 37888999999766433 344788888888888877664
No 5
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=3.3e-15 Score=138.62 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=157.7
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
+..|++++..|.+....++..+. ..+..+|+|+|||+|..+..+.+ + .|..+|+.
T Consensus 6 ~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~--------~-------~~~~~v~g 60 (258)
T PRK01683 6 PSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVE--------R-------WPAARITG 60 (258)
T ss_pred HHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHH--------H-------CCCCEEEE
Confidence 45799999999888777665443 23457999999999999987764 2 23468999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+...+....-+.++. .-|..+ ++ ..+.|++++|+++|+.++||+.+.
T Consensus 61 vD~s~~~i~~a~~~~~~--~~~~~~---d~-~~~~~~~~fD~v~~~~~l~~~~d~------------------------- 109 (258)
T PRK01683 61 IDSSPAMLAEARSRLPD--CQFVEA---DI-ASWQPPQALDLIFANASLQWLPDH------------------------- 109 (258)
T ss_pred EECCHHHHHHHHHhCCC--CeEEEC---ch-hccCCCCCccEEEEccChhhCCCH-------------------------
Confidence 99988776665444432 223433 45 345677899999999999997543
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHH--HHHHHHHhcCCcCCCcccCCCHHHHHHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFG--SCLVELTKMGILSKEKMYNPTPKELEGII 244 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~--~a~~~l~~eG~i~~~~~y~ps~eE~~~~i 244 (329)
..+|+...+.|+|||.+++.+.+... ... . ..+..+. .-|.......- ....++++++++...+
T Consensus 110 ------~~~l~~~~~~LkpgG~~~~~~~~~~~--~~~---~-~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l 175 (258)
T PRK01683 110 ------LELFPRLVSLLAPGGVLAVQMPDNLD--EPS---H-VLMREVAENGPWEQNLPDRG--ARRAPLPPPHAYYDAL 175 (258)
T ss_pred ------HHHHHHHHHhcCCCcEEEEECCCCCC--CHH---H-HHHHHHHccCchHHHhcccc--ccCcCCCCHHHHHHHH
Confidence 37799999999999999998643211 110 0 0111110 01222211110 0014668999999999
Q ss_pred HhCCceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhh--hhhhhcCCCceEE
Q 037735 245 QRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENIS--IIGQRVQDSMMDL 322 (329)
Q Consensus 245 ~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~--~~~~~~~~~~~~~ 322 (329)
...| +.+...+......+. +++.+.+++++++-..+-.+++++..++|.+.|.+.+.+... .-|. -...+.-+
T Consensus 176 ~~~g-~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 250 (258)
T PRK01683 176 APAA-CRVDIWHTTYYHPMP---SAQAIVEWVKGTGLRPFLDPLTESEQAAFLAAYLARIAEAYPLQADGK-VLLAFPRL 250 (258)
T ss_pred HhCC-CceeeeeeeeeeecC---CchhhhhhhhhccHHHHHhhCCHHHHHHHHHHHHHHHHHHCCCCCCCc-EEcccceE
Confidence 9886 555443332111232 367889999986543344789999999999999998877632 1110 12344555
Q ss_pred EEEEEe
Q 037735 323 FILLKR 328 (329)
Q Consensus 323 ~~~L~r 328 (329)
+++-+|
T Consensus 251 ~~~~~~ 256 (258)
T PRK01683 251 FIVARR 256 (258)
T ss_pred EEEEEe
Confidence 665554
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=4.2e-15 Score=138.18 Aligned_cols=226 Identities=15% Similarity=0.153 Sum_probs=147.7
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
...|.+++..|.+.+..+++.+. .....+|+|+|||+|..+..+.. + .|..+|+.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~~--------~-------~p~~~v~g 58 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLAR--------R-------WPGAVIEA 58 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHHH--------H-------CCCCEEEE
Confidence 45799999999988877655544 23458999999999998887754 2 23468999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+..++....-.. ..-|.. +++ +.+.|++++|+|+|+.++||+.+.
T Consensus 59 vD~s~~~~~~a~~~----~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d~------------------------- 105 (255)
T PRK14103 59 LDSSPEMVAAARER----GVDART---GDV-RDWKPKPDTDVVVSNAALQWVPEH------------------------- 105 (255)
T ss_pred EECCHHHHHHHHhc----CCcEEE---cCh-hhCCCCCCceEEEEehhhhhCCCH-------------------------
Confidence 99987665543221 122343 355 456678899999999999997543
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHH--HHHHHHHhcCCcCCCcccCCCHHHHHHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFG--SCLVELTKMGILSKEKMYNPTPKELEGII 244 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~--~a~~~l~~eG~i~~~~~y~ps~eE~~~~i 244 (329)
..+|+.-++.|+|||.+++.+.+..+. +. ......+. ..|...... .-.....++.+++++.+++
T Consensus 106 ------~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~-----~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 106 ------ADLLVRWVDELAPGSWIAVQVPGNFDA-PS-----HAAVRALARREPWAKLLRD-IPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred ------HHHHHHHHHhCCCCcEEEEEcCCCcCC-hh-----HHHHHHHhccCchhHHhcc-cccccCcCCCCHHHHHHHH
Confidence 377999999999999999987663221 10 01111111 224333211 0000004567999999999
Q ss_pred HhCCceEEeEEEEeecCcccccccHHHHhhhHhhhh-hhHHhhhcChHHHHHHHHHHHHHHHHhh
Q 037735 245 QRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVY-EGLVKEHFGDEFVDKIFNHFATKAEENI 308 (329)
Q Consensus 245 ~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~-e~~~~~~~g~~~~d~~f~ry~~~~~~~~ 308 (329)
++.| |++...+........ ....+..+++++. .+++ +.++++..++|-+.+.+.+.++.
T Consensus 173 ~~aG-f~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 173 TDAG-CKVDAWETTYVHQLT---GEDPVLDWITGTALRPVR-ERLSDDSWEQFRAELIPLLREAY 232 (255)
T ss_pred HhCC-CeEEEEeeeeeeeCC---Cchhhhhhhhccchhhhh-hhCCHHHHHHHHHHHHHHHHHHC
Confidence 9995 987665543211111 2455777777644 3344 47888888999899988887663
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=1.5e-12 Score=122.03 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=105.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC------CCcceeeeccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP------QSRSYYAAGVPGS 115 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~------~~~~~f~~gvpgs 115 (329)
+..+|+|+|||||..+..+...+ .|..+|+..|+..++....-+..+ ..+-.|..+ +
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~---d 135 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG---D 135 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc---c
Confidence 45799999999999887765421 234589999999988876543322 011234444 5
Q ss_pred cccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 116 Fy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+-.+|++|+|++++++++||+.+. ..+|++.++.|+|||++++..++
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~d~-------------------------------~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVVDR-------------------------------LKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCCCH-------------------------------HHHHHHHHHHcCcCcEEEEEECC
Confidence 64445899999999999999997543 47899999999999999999998
Q ss_pred cCCCCcccCCcccchHHH-HHHHHHHHH-hcCCcCCCc-------ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 196 VPDGIPLVNNAAGSFYNT-FGSCLVELT-KMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-l~~a~~~l~-~eG~i~~~~-------~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+++.... ..+++. +...+.-+. .-|. .++- ..+++.+|+.+.++..| |++.+...
T Consensus 185 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~~ 248 (261)
T PLN02233 185 KSTQPFT-----TSMQEWMIDNVVVPVATGYGL-AKEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHYE 248 (261)
T ss_pred CCCcHHH-----HHHHHHHHhhhhhHHHHHhCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEEE
Confidence 7653210 011111 111111110 0121 0100 23689999999999884 98776544
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=1.3e-12 Score=120.52 Aligned_cols=160 Identities=21% Similarity=0.258 Sum_probs=115.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc---ceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR---SYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~---~~f~~gvpgsFy~ 118 (329)
+..+|||+|||||..++.+.+.+ ++.+|+..|...+|++..-+.+.... -.|+.| ++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~---------------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~---dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV---------------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG---DAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc---------------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEe---chhh
Confidence 57999999999999999998633 14689999999999998777665422 235554 7977
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+||++|+|++.+++.||++.+.+ +.|++.+|.|+|||++++.=+++++
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~-------------------------------~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDID-------------------------------KALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHH-------------------------------HHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 779999999999999999998777 5599999999999999999998876
Q ss_pred CCcccCCcccchHH-----------HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYN-----------TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~-----------~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
..+.........+. .-.++++-|+..+ -.+|+.+++.+.+++. +|+.+..+.
T Consensus 162 ~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi------~~~p~~~~l~~~~~~~-gf~~i~~~~ 224 (238)
T COG2226 162 NPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESI------RRFPDQEELKQMIEKA-GFEEVRYEN 224 (238)
T ss_pred chhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHH------HhCCCHHHHHHHHHhc-CceEEeeEe
Confidence 43321100000011 0011222222222 5679999999999998 488766443
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.39 E-value=4.7e-12 Score=115.41 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=104.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..+..+.+.+ .|..+++..|+..++....-+.+. ..+--++. +++..
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~ 107 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVH---GNAME 107 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE---echhc
Confidence 34799999999999998887522 344689999998776554333221 11122343 35655
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+|++++|+|+++.++||+++. ..+|+...+.|+|||++++...+.++
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~-------------------------------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDY-------------------------------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred CCCCCCCccEEEEecccccCCCH-------------------------------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 45788999999999999997543 37799999999999999988777654
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCc-----CCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGIL-----SKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i-----~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
....... ....+..+--.+..+...+.. .+....+|+.+|+++.+++.| |++.+++.+
T Consensus 157 ~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 157 IPGFKQL-YFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred ChHHHHH-HHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 3211000 000000000011111110000 000056799999999999985 998887765
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.38 E-value=1.4e-11 Score=111.12 Aligned_cols=215 Identities=15% Similarity=0.249 Sum_probs=143.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
..+.+|.|||||+|.-|.++.+ ++ |..++..-|-...|.......+|+. -|.-| +. ...
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~--------Rw-------P~A~i~GiDsS~~Mla~Aa~rlp~~--~f~~a---Dl-~~w 87 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLAR--------RW-------PDAVITGIDSSPAMLAKAAQRLPDA--TFEEA---DL-RTW 87 (257)
T ss_pred cccceeeecCCCCCHHHHHHHH--------hC-------CCCeEeeccCCHHHHHHHHHhCCCC--ceecc---cH-hhc
Confidence 4578999999999999999986 53 5679999999999999988888761 22222 12 455
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
-|....|+++|+.+||||.+=| ..|..--.+|.|||+|++.+++ |..
T Consensus 88 ~p~~~~dllfaNAvlqWlpdH~-------------------------------~ll~rL~~~L~Pgg~LAVQmPd--N~d 134 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPDHP-------------------------------ELLPRLVSQLAPGGVLAVQMPD--NLD 134 (257)
T ss_pred CCCCccchhhhhhhhhhccccH-------------------------------HHHHHHHHhhCCCceEEEECCC--ccC
Confidence 7999999999999999976654 5588888999999999999954 443
Q ss_pred cccCCcccchHHHHHHHHH-----H-HHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccc-cHHHHh
Q 037735 201 PLVNNAAGSFYNTFGSCLV-----E-LTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLC-SASDLA 273 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~-----~-l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~-~~~~~~ 273 (329)
+.+ +..+.+..+ + |.+-|+ . .--.+++.-+-+++... +-+|.--++.-.+ ++ +.+.++
T Consensus 135 eps-------H~~mr~~A~~~p~~~~l~~~~~-~--r~~v~s~a~Yy~lLa~~-~~rvDiW~T~Y~h----~l~~a~aIv 199 (257)
T COG4106 135 EPS-------HRLMRETADEAPFAQELGGRGL-T--RAPLPSPAAYYELLAPL-ACRVDIWHTTYYH----QLPGADAIV 199 (257)
T ss_pred chh-------HHHHHHHHhcCchhhhhCcccc-c--cCCCCCHHHHHHHhCcc-cceeeeeeeeccc----cCCCccchh
Confidence 332 222222221 1 111121 0 03346888888888766 3444433333111 11 356789
Q ss_pred hhHhhhhh-hHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCC----CceEEEEEEEe
Q 037735 274 VAMRAVYE-GLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQD----SMMDLFILLKR 328 (329)
Q Consensus 274 ~~iRa~~e-~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~----~~~~~~~~L~r 328 (329)
.|+|++.- |.+.. ++++--..|.++|..++.++.... .+. .+--+|||-+|
T Consensus 200 dWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~---~dGr~ll~FpRlFiVA~~ 255 (257)
T COG4106 200 DWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPR---ADGRVLLAFPRLFIVATR 255 (257)
T ss_pred hheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCc---cCCcEEeecceEEEEEec
Confidence 99999664 55544 777777889999999986655422 222 34456666655
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.33 E-value=1e-10 Score=109.76 Aligned_cols=195 Identities=12% Similarity=0.134 Sum_probs=122.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.. .+ ..+|+..|+..++....-+..+.. +..|.. +++...
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~--------~~--------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~---~D~~~~ 111 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINE--------KY--------GAHVHGVDICEKMVNIAKLRNSDKNKIEFEA---NDILKK 111 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHh--------hc--------CCEEEEEECCHHHHHHHHHHcCcCCceEEEE---CCcccC
Confidence 3457999999999998877753 11 258999999887766544433321 223444 467666
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+|+|..++++++. .|...+|+..++.|+|||+++++-+...+.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~-----------------------------~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~ 162 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSY-----------------------------ADKKKLFEKCYKWLKPNGILLITDYCADKI 162 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 689999999999888766431 144588999999999999999987765432
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhhh
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAV 279 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~ 279 (329)
.. .-+.+...+. ..+ ..+++++++.++++.. +|+.+..+.....|... -..+...+++-
T Consensus 163 ~~--------~~~~~~~~~~---~~~------~~~~~~~~~~~~l~~a-GF~~v~~~d~~~~~~~~---~~~~~~~~~~~ 221 (263)
T PTZ00098 163 EN--------WDEEFKAYIK---KRK------YTLIPIQEYGDLIKSC-NFQNVVAKDISDYWLEL---LQVELKKLEEK 221 (263)
T ss_pred cC--------cHHHHHHHHH---hcC------CCCCCHHHHHHHHHHC-CCCeeeEEeCcHHHHHH---HHHHHHHHHHh
Confidence 11 1112222221 123 4568999999999998 49988877653322110 01111222221
Q ss_pred hhhHHhhhcChHHHHHHHHHHHHHHH
Q 037735 280 YEGLVKEHFGDEFVDKIFNHFATKAE 305 (329)
Q Consensus 280 ~e~~~~~~~g~~~~d~~f~ry~~~~~ 305 (329)
+.-+.+.+|++-.+.+-.-+...+.
T Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 222 -KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred -HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1234445787777776666655543
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.33 E-value=3.7e-11 Score=116.68 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=113.4
Q ss_pred HHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 12 SNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 12 ~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
.+...|...++.++..+.- .. .......+|+|+|||+|.++..+.+ ++ ..+|+..|+..
T Consensus 93 ~~~~aq~~~~~~~l~~~~~--~~---~~~~~~~~VLDiGCG~G~~~~~La~--------~~--------g~~v~gvD~s~ 151 (340)
T PLN02244 93 DHRQAQIRMIEESLAWAGV--PD---DDEKRPKRIVDVGCGIGGSSRYLAR--------KY--------GANVKGITLSP 151 (340)
T ss_pred cHHHHHHHHHHHHHHhcCC--Cc---ccCCCCCeEEEecCCCCHHHHHHHH--------hc--------CCEEEEEECCH
Confidence 3556666666555444320 00 0013457899999999999988875 21 24789999987
Q ss_pred chHHhhhhcCC---C-CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 92 NDFNTLFKSLP---Q-SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 92 ndfn~lf~~l~---~-~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
++....-+... . .+-.|..+ ++.+..||++++|+|+|..++|++.+
T Consensus 152 ~~i~~a~~~~~~~g~~~~v~~~~~---D~~~~~~~~~~FD~V~s~~~~~h~~d--------------------------- 201 (340)
T PLN02244 152 VQAARANALAAAQGLSDKVSFQVA---DALNQPFEDGQFDLVWSMESGEHMPD--------------------------- 201 (340)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEc---CcccCCCCCCCccEEEECCchhccCC---------------------------
Confidence 76554332211 1 12235544 56566689999999999999988643
Q ss_pred HhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCC---CHHHHHHHH
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNP---TPKELEGII 244 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~p---s~eE~~~~i 244 (329)
...+|+..++.|+|||+++++.....+..+... . +...-...+..+.. + .|+| +.+|+.+++
T Consensus 202 ----~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~-~---l~~~~~~~~~~i~~-~------~~~p~~~s~~~~~~~l 266 (340)
T PLN02244 202 ----KRKFVQELARVAAPGGRIIIVTWCHRDLEPGET-S---LKPDEQKLLDKICA-A------YYLPAWCSTSDYVKLA 266 (340)
T ss_pred ----HHHHHHHHHHHcCCCcEEEEEEecccccccccc-c---CCHHHHHHHHHHHh-h------ccCCCCCCHHHHHHHH
Confidence 347899999999999999999876544322100 0 00011112222211 2 3333 899999999
Q ss_pred HhCCceEEeEEEEe
Q 037735 245 QRNGNFTIERMEKM 258 (329)
Q Consensus 245 ~~~g~f~i~~~e~~ 258 (329)
++.| |+.++.+.+
T Consensus 267 ~~aG-f~~v~~~d~ 279 (340)
T PLN02244 267 ESLG-LQDIKTEDW 279 (340)
T ss_pred HHCC-CCeeEeeeC
Confidence 9885 998776654
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.32 E-value=1.3e-12 Score=120.70 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=77.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||||..|..+...+ .|..+|+..|+..+|....-+.+.. .+--|+.| ++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~---da~ 108 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG---DAE 108 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE----BTT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc---CHH
Confidence 446799999999999999886422 3456899999999998876554432 12335654 676
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-.||++|+|.+++++.+|-+.+. .+.|++..|.|+|||++++.=++++
T Consensus 109 ~lp~~d~sfD~v~~~fglrn~~d~-------------------------------~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 109 DLPFPDNSFDAVTCSFGLRNFPDR-------------------------------ERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp B--S-TT-EEEEEEES-GGG-SSH-------------------------------HHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HhcCCCCceeEEEHHhhHHhhCCH-------------------------------HHHHHHHHHHcCCCeEEEEeeccCC
Confidence 666999999999999999986543 4779999999999999999999887
Q ss_pred CCCcccCCcccchHHHHHHHHHH-HH--hcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVE-LT--KMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~-l~--~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+... +..+-..|-. .+ -..++.++. .-+|+.+|+.+.+++.| |+..+.+.
T Consensus 158 ~~~~---------~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~~ 220 (233)
T PF01209_consen 158 RNPL---------LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYRP 220 (233)
T ss_dssp SSHH---------HHHHHHH-----------------------------------------------------
T ss_pred CCch---------hhceeeeeecccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 6321 1111111111 00 112334332 45689999999999884 88765554
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=1.7e-10 Score=116.49 Aligned_cols=186 Identities=15% Similarity=0.227 Sum_probs=123.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . ...+++..|+........-+.... .+..|..+ ++...
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~--------~--------~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~---d~~~~ 326 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAE--------N--------FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA---DCTKK 326 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHH--------h--------cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc---CcccC
Confidence 456899999999998876653 1 125799999987665543332211 12234443 67666
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+|+|..+++|+.+. ..+|+..++.|+|||+++++.+.+...
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~-------------------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~ 375 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDK-------------------------------PALFRSFFKWLKPGGKVLISDYCRSPG 375 (475)
T ss_pred CCCCCCEEEEEECCcccccCCH-------------------------------HHHHHHHHHHcCCCeEEEEEEeccCCC
Confidence 7889999999999999997543 378999999999999999999876543
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhhh
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAV 279 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~ 279 (329)
.+. ..+... +...| .++++.+++.+++++. ||++...+.+..+ +..+++.+
T Consensus 376 ~~~---------~~~~~~---~~~~g------~~~~~~~~~~~~l~~a-GF~~i~~~d~~~~----------~~~~~~~~ 426 (475)
T PLN02336 376 TPS---------PEFAEY---IKQRG------YDLHDVQAYGQMLKDA-GFDDVIAEDRTDQ----------FLQVLQRE 426 (475)
T ss_pred CCc---------HHHHHH---HHhcC------CCCCCHHHHHHHHHHC-CCeeeeeecchHH----------HHHHHHHH
Confidence 221 011111 22335 6678999999999998 5999877655322 23333222
Q ss_pred hhh------HHhhhcChHHHHHHHHHHHHHHHH
Q 037735 280 YEG------LVKEHFGDEFVDKIFNHFATKAEE 306 (329)
Q Consensus 280 ~e~------~~~~~~g~~~~d~~f~ry~~~~~~ 306 (329)
.+. -+...+|++..+.+...+...+..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 459 (475)
T PLN02336 427 LDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVR 459 (475)
T ss_pred HHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhh
Confidence 222 223456777777776666666543
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.29 E-value=9.9e-12 Score=96.14 Aligned_cols=95 Identities=26% Similarity=0.287 Sum_probs=72.3
Q ss_pred EeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCce
Q 037735 47 ADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSL 126 (329)
Q Consensus 47 aDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~ 126 (329)
||+|||+|.++..+.+ .+...++..|.........-+.......-+..+ ++..-.||++|+
T Consensus 1 LdiG~G~G~~~~~l~~----------------~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAK----------------RGGASVTGIDISEEMLEQARKRLKNEGVSFRQG---DAEDLPFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHHH----------------TTTCEEEEEES-HHHHHHHHHHTTTSTEEEEES---BTTSSSS-TT-E
T ss_pred CEecCcCCHHHHHHHh----------------ccCCEEEEEeCCHHHHHHHHhcccccCchheee---hHHhCccccccc
Confidence 7999999999999986 223689999998877676666554432225544 676667999999
Q ss_pred eEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 127 HFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 127 dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
|+++++.++||+ + |...+|++.+|.|+|||++++
T Consensus 62 D~v~~~~~~~~~---~----------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 62 DVVFSNSVLHHL---E----------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEESHGGGS---S----------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccceeec---c----------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999998 2 456899999999999999986
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.26 E-value=5.3e-12 Score=107.42 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=94.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc--c
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY--S 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy--~ 118 (329)
.+..+|+|+|||+|.++..+.. .+ .+++..|....+... ... ++..|. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~----------------~~-~~~~g~D~~~~~~~~--~~~----------~~~~~~~~~ 71 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK----------------RG-FEVTGVDISPQMIEK--RNV----------VFDNFDAQD 71 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH----------------TT-SEEEEEESSHHHHHH--TTS----------EEEEEECHT
T ss_pred CCCCEEEEEcCCCCHHHHHHHH----------------hC-CEEEEEECCHHHHhh--hhh----------hhhhhhhhh
Confidence 4568999999999988777743 12 489999997655433 110 111232 3
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..+|++++|+|+|+.+|||+.+ +..+|+...+-|+|||+++++++.+..
T Consensus 72 ~~~~~~~fD~i~~~~~l~~~~d-------------------------------~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 72 PPFPDGSFDLIICNDVLEHLPD-------------------------------PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp HHCHSSSEEEEEEESSGGGSSH-------------------------------HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred hhccccchhhHhhHHHHhhccc-------------------------------HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 4478999999999999999764 348899999999999999999998753
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCC-c-ccCCCHHHHHHHHHhCCceEEeE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKE-K-MYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~-~-~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
.. ...+... ...... . ..+-+.++++.++++.| |+|++
T Consensus 121 ~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 121 PS--------------PRSFLKW---RYDRPYGGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp HH--------------HHHHHHC---CGTCHHTTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred hh--------------hhHHHhc---CCcCccCceeccCCHHHHHHHHHHCC-CEEEE
Confidence 10 0001111 111110 1 55679999999999995 99864
No 17
>PRK08317 hypothetical protein; Provisional
Probab=99.23 E-value=2.6e-09 Score=96.47 Aligned_cols=220 Identities=16% Similarity=0.114 Sum_probs=127.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~ 118 (329)
....+|+|+|||+|..+..+.... .|..+++..|+..+.....-+... .....|..+ ++..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~ 80 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG---DADG 80 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec---cccc
Confidence 345799999999999888776522 234589999998766554433311 111224433 4544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..++++++|++++..++||+.+. ..+|+..++.|+|||.+++..+..+.
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDP-------------------------------ARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred CCCCCCCceEEEEechhhccCCH-------------------------------HHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 45788999999999999997643 37799999999999999998754322
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhh
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRA 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa 278 (329)
... .......+..+...|.. .+ .-..+..++.+.+++. +|+...++....... ...+......+..
T Consensus 130 ~~~--~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~l~~a-Gf~~~~~~~~~~~~~--~~~~~~~~~~l~~ 195 (241)
T PRK08317 130 LVW--HSGDRALMRKILNFWSD---HF------ADPWLGRRLPGLFREA-GLTDIEVEPYTLIET--DLKEADKGFGLIR 195 (241)
T ss_pred eee--cCCChHHHHHHHHHHHh---cC------CCCcHHHHHHHHHHHc-CCCceeEEEEEEecc--CcchhhHHHHHHH
Confidence 110 00111122233333332 11 1223457899999988 598887776532210 0012222333333
Q ss_pred hhhhHH-hhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 279 VYEGLV-KEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 279 ~~e~~~-~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
....+. ...++++-+++++...++..... ..+-.+.++++..||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~k 240 (241)
T PRK08317 196 AARRAVEAGGISADEADAWLADLAQLARAG-------EFFFSVTGFLVVGRK 240 (241)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-------CEEEEEEEEEEEEeC
Confidence 222222 23356677788888777654321 112246666666554
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.18 E-value=1.1e-10 Score=107.49 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=97.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|.++..+.+.+ ..|..+++..|+..++....-+.+.. . +--|.. +++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~ 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIR 116 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChh
Confidence 44689999999999998887522 13557899999988776665444322 1 112443 4674
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.-.+| +.|+++|++++||++. .|...+|+...+.|+|||.++++-....
T Consensus 117 ~~~~~--~~d~v~~~~~l~~~~~-----------------------------~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 117 HVEIK--NASMVILNFTLQFLPP-----------------------------EDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred hCCCC--CCCEEeeecchhhCCH-----------------------------HHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 43344 5789999999999752 1345889999999999999999865443
Q ss_pred CCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCc-----------ccCCCHHHHHHHHHhCCceE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEK-----------MYNPTPKELEGIIQRNGNFT 251 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~-----------~y~ps~eE~~~~i~~~g~f~ 251 (329)
+... ..+.+...+.... ..|. +.++ ....|++|+.+++++.| |.
T Consensus 166 ~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 166 EDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred CCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 3221 1122333333332 2342 2211 33357788888877774 65
No 19
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.14 E-value=5e-09 Score=103.44 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=97.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|.++..+.+ ++ ..+|+..|+..++....-+.......-+.. +++ ..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~--------~~--------g~~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~-~~l- 225 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAE--------HY--------GVSVVGVTISAEQQKLAQERCAGLPVEIRL---QDY-RDL- 225 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHH--------HC--------CCEEEEEeCCHHHHHHHHHHhccCeEEEEE---Cch-hhc-
Confidence 346999999999999887764 21 257999999887766654444321111222 233 233
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
++++|.|+|..+++|+.. +++..+|+...+.|+|||.+++..++.+....
T Consensus 226 -~~~fD~Ivs~~~~ehvg~-----------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~ 275 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGP-----------------------------KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT 275 (383)
T ss_pred -CCCCCEEEEeCchhhCCh-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC
Confidence 578999999999998532 24558899999999999999999988765321
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
... .| +...+--| -++|+++++...++. +|++..++.+
T Consensus 276 ~~~-----~~------i~~yifp~------g~lps~~~i~~~~~~--~~~v~d~~~~ 313 (383)
T PRK11705 276 NVD-----PW------INKYIFPN------GCLPSVRQIAQASEG--LFVMEDWHNF 313 (383)
T ss_pred CCC-----CC------ceeeecCC------CcCCCHHHHHHHHHC--CcEEEEEecC
Confidence 100 00 00000001 357999999998763 4998887765
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=4.6e-10 Score=104.41 Aligned_cols=155 Identities=16% Similarity=0.252 Sum_probs=100.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
..+.+|+|+|||+|..+..+.. . ..+|+..|+..++....-+.+.. . +-.|+.+ ++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~---d~ 102 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC---AA 102 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc---CH
Confidence 4467999999999999888864 1 14799999988776654443321 1 1234443 44
Q ss_pred cccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-. ++++++|+|++..++||+.+++ .+|+..++.|+|||++++.+..
T Consensus 103 ~~l~~~~~~~fD~V~~~~vl~~~~~~~-------------------------------~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 103 QDIAQHLETPVDLILFHAVLEWVADPK-------------------------------SVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHhhhcCCCCCEEEehhHHHhhCCHH-------------------------------HHHHHHHHHcCCCeEEEEEEEC
Confidence 3322 5678999999999999986543 6699999999999999988766
Q ss_pred cCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-----ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 196 VPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
..... +-..+..-+. .+..|+...+. .+..+++++.++++.. +|+++...-
T Consensus 152 ~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a-Gf~~~~~~g 207 (255)
T PRK11036 152 ANGLL---------MHNMVAGNFD-YVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA-GWQIMGKTG 207 (255)
T ss_pred ccHHH---------HHHHHccChH-HHHhcCccccccCCCCCCCCCHHHHHHHHHHC-CCeEeeeee
Confidence 44210 0001111111 12233322222 3445899999999988 499976554
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.12 E-value=1.5e-09 Score=98.42 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=103.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.... .+..+++..|+..+.....-+.+.. ....|.. +++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~ 113 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ---GDAE 113 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe---cccc
Confidence 34799999999999988886522 1136899999987665554333321 1122333 3565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+..++++++|++++++.+|++++++ .+|+...+-|+|||.+++..+..+
T Consensus 114 ~~~~~~~~~D~I~~~~~l~~~~~~~-------------------------------~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 114 ALPFPDNSFDAVTIAFGLRNVPDID-------------------------------KALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred cCCCCCCCccEEEEecccccCCCHH-------------------------------HHHHHHHHhccCCcEEEEEEecCC
Confidence 5557788999999999999976543 779999999999999998876554
Q ss_pred CCCcccCCcccchHHHHHHHHHH--------HHhcCCcCCC---c--ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVE--------LTKMGILSKE---K--MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~--------l~~eG~i~~~---~--~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.... +..+...+.. .......... . .++++.+++..++++.| |++.+...+.
T Consensus 163 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 227 (239)
T PRK00216 163 TNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNLT 227 (239)
T ss_pred CchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeeee
Confidence 3211 1111111111 1111000000 0 35679999999999994 9988777653
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.12 E-value=5.6e-10 Score=108.35 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=102.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...+|+|+|||+|.++..+.+ . .+..+++..|+..++....-+..+..+--++ .++..+..+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~--------~-------~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i---~gD~e~lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVK--------H-------VDAKNVTILDQSPHQLAKAKQKEPLKECKII---EGDAEDLPF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHhhhccCCeEE---eccHHhCCC
Confidence 357999999999998887764 2 1225899999988776655443321112233 346655557
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
+++++|+++|+.++|++.+. ...|++..+.|+|||++++.....++.
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~-------------------------------~~~L~e~~rvLkPGG~LvIi~~~~p~~-- 221 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDP-------------------------------QRGIKEAYRVLKIGGKACLIGPVHPTF-- 221 (340)
T ss_pred CCCceeEEEEcChhhhCCCH-------------------------------HHHHHHHHHhcCCCcEEEEEEecCcch--
Confidence 89999999999999986543 267999999999999998864322110
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcc
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQ 263 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~ 263 (329)
+ +..-+.++ - ..+++.+|+.+++++. +|+.++++.+.+.|+
T Consensus 222 ---------~--~~r~~~~~---~------~~~~t~eEl~~lL~~a-GF~~V~i~~i~~~~~ 262 (340)
T PLN02490 222 ---------W--LSRFFADV---W------MLFPKEEEYIEWFTKA-GFKDVKLKRIGPKWY 262 (340)
T ss_pred ---------h--HHHHhhhh---h------ccCCCHHHHHHHHHHC-CCeEEEEEEcChhhc
Confidence 0 01101111 0 3468999999999988 599888877655554
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.12 E-value=5.3e-10 Score=107.91 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=101.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C--Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q--SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~--~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|.++..+.. +..+|+.-|+...+.....+... . ..-.|..+ ++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-----------------~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~---dae 190 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-----------------MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT---TAE 190 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-----------------cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec---CHH
Confidence 346899999999998886652 12589999999877665543321 1 11224443 554
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-.++++++|+|++..++||+.+++ .||+..++.|+|||+++++++.+.
T Consensus 191 ~l~~~~~~FD~Vi~~~vLeHv~d~~-------------------------------~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 191 KLADEGRKFDAVLSLEVIEHVANPA-------------------------------EFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HhhhccCCCCEEEEhhHHHhcCCHH-------------------------------HHHHHHHHHcCCCcEEEEEECCcC
Confidence 4346788999999999999977543 789999999999999999998654
Q ss_pred CCCcccCCcccchHHHH-HHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTF-GSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l-~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... .....+ ..-+...+..|. ..-..+.+++|+...+++. +|++..+.-
T Consensus 240 ~~~--------~~~~i~~~eyi~~~lp~gt--h~~~~f~tp~eL~~lL~~a-Gf~i~~~~G 289 (322)
T PLN02396 240 MRA--------YASTIVGAEYILRWLPKGT--HQWSSFVTPEELSMILQRA-SVDVKEMAG 289 (322)
T ss_pred HHH--------HHHhhhhHHHHHhcCCCCC--cCccCCCCHHHHHHHHHHc-CCeEEEEee
Confidence 210 000000 011111122221 0003467999999999998 499987764
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.09 E-value=6.9e-10 Score=107.13 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=96.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhhcCCCC-cceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFKSLPQS-RSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~~l~~~-~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..+..++. . .+. +|+..|....++.. .-+..... +-.|. ++++.+
T Consensus 123 g~~VLDIGCG~G~~~~~la~--------~-------g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~---~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLG--------A-------GAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLL---PLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c-------CCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEE---eCCHHH
Confidence 46899999999999988764 1 232 69999977655432 11112111 12233 335533
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+ ++++|+|+|..++||..+ ...+|+..++.|+|||.+++.++..+.
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~d-------------------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRRS-------------------------------PLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CCC-cCCcCEEEECChhhccCC-------------------------------HHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 333 788999999999998653 347799999999999999999875443
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.... .++. ...+..| .+. .+.||.+++..++++.| |+++++...
T Consensus 232 ~~~~------~l~p--~~~y~~~--~~~-----~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 232 DENT------VLVP--GDRYAKM--RNV-----YFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred CCcc------ccCc--hhHHhcC--ccc-----eeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 2110 0000 0001111 111 45689999999999995 998887754
No 25
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.09 E-value=3.8e-09 Score=94.75 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=101.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-CCcceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~~~~~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..+..+.... .+..+++..|+........-+.++ ..+..+.. +++.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~--------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~ 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA--------------PDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ---ADAEALP 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc--------------CCCceEEEEECCHHHHHHHHHHhccCCCceEEe---cchhcCC
Confidence 46799999999999988886421 111579999986555444433332 11122333 4565656
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+++++..+|+..+. ..+|+..++.|+|||++++...-.+...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 150 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDI-------------------------------QKALREMYRVLKPGGRLVILEFSKPANA 150 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccH-------------------------------HHHHHHHHHHcCCCcEEEEEEecCCCch
Confidence 788899999999999986543 3779999999999999998765433221
Q ss_pred cccCCcccchHHHHHHHHHH-HH--hcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVE-LT--KMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~-l~--~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+ +..+.+.+.. +. ..+...... ..+++.+|+..++++.| |++...+..
T Consensus 151 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 211 (223)
T TIGR01934 151 L---------LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSL 211 (223)
T ss_pred h---------hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeee
Confidence 1 1222222221 11 011111111 23578999999999885 998877754
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.08 E-value=9.8e-10 Score=101.92 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|.++..+...+ . .|..+++..|+...+....-+.+.. . +.-+.. +++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~--------~-----~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~---~d~ 118 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI--------H-----HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDI 118 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc--------C-----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe---CCh
Confidence 345789999999999988876422 1 3557899999988777665444321 1 122333 455
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+-.+ ...|++++++++||++. + +...+|+..++.|+|||.|+++-.
T Consensus 119 ~~~~~--~~~D~vv~~~~l~~l~~-~----------------------------~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 119 RDIAI--ENASMVVLNFTLQFLEP-S----------------------------ERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhCCC--CCCCEEehhhHHHhCCH-H----------------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 44333 35899999999999863 1 234789999999999999999863
No 27
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=9.3e-10 Score=100.19 Aligned_cols=199 Identities=18% Similarity=0.203 Sum_probs=133.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
..-..+|+|||-|..+..+...- . -+++..|....|..+....-.+. ..||+. += +.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~---------------v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~----DE-E~ 130 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG---------------V-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVG----DE-EF 130 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc---------------h-hheeeeecchHHHHHhhccCCCceEEEEEec----ch-hc
Confidence 34567999999999999887522 2 26888898877766654432111 133432 22 55
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
| |-.||+|+++||.++||.+++|.. +..+...|||.|.++-+++|-++
T Consensus 131 Ldf~ens~DLiisSlslHW~NdLPg~-------------------------------m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 131 LDFKENSVDLIISSLSLHWTNDLPGS-------------------------------MIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccccccchhhhhhhhhhhhhccCchH-------------------------------HHHHHHhcCCCccchhHHhcccc
Confidence 5 899999999999999999999944 88899999999999999999887
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC-cccccccHHHHhhhHh
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP-KQQVLCSASDLAVAMR 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~iR 277 (329)
..++ -++--+.+|-.+|-|+..---+-...++..++... +|....+.+-+.. -+. ..-++.-++|
T Consensus 180 LyEL----------R~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA-GF~m~tvDtDEi~v~Yp---~mfeLm~dLq 245 (325)
T KOG2940|consen 180 LYEL----------RCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA-GFSMLTVDTDEIVVGYP---RMFELMEDLQ 245 (325)
T ss_pred HHHH----------HHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc-CcccceecccceeecCc---hHHHHHHHHH
Confidence 3321 12334677778887766543334567788888888 4887766543221 121 2345677888
Q ss_pred hhhhh--HHh--hhcChHHHHHHHHHHHHHHHH
Q 037735 278 AVYEG--LVK--EHFGDEFVDKIFNHFATKAEE 306 (329)
Q Consensus 278 a~~e~--~~~--~~~g~~~~d~~f~ry~~~~~~ 306 (329)
+.+|+ .+. +++.++.+=.--.-|.+.++.
T Consensus 246 ~MgEsn~~~~Rn~~l~Ret~vAaaAiY~smya~ 278 (325)
T KOG2940|consen 246 GMGESNAALNRNAILNRETMVAAAAIYQSMYAT 278 (325)
T ss_pred hhcccchhhccCccccHHHHHHHHHHHHHHhcC
Confidence 88875 222 345565554444556666654
No 28
>PRK05785 hypothetical protein; Provisional
Probab=99.07 E-value=2.3e-09 Score=98.47 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=91.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|||+|||||.++..+.+ ++ ..+|+.-|+..++....-.. .-++. +++....||
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~--------~~--------~~~v~gvD~S~~Ml~~a~~~-----~~~~~---~d~~~lp~~ 107 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKK--------VF--------KYYVVALDYAENMLKMNLVA-----DDKVV---GSFEALPFR 107 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHH--------hc--------CCEEEEECCCHHHHHHHHhc-----cceEE---echhhCCCC
Confidence 57999999999999887754 21 14799999998887654332 11333 467566689
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcc
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL 202 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~ 202 (329)
++|+|+++|++++||+.+++ ..|++.++.|+|+ +++.-++.++..
T Consensus 108 d~sfD~v~~~~~l~~~~d~~-------------------------------~~l~e~~RvLkp~--~~ile~~~p~~~-- 152 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIE-------------------------------KVIAEFTRVSRKQ--VGFIAMGKPDNV-- 152 (226)
T ss_pred CCCEEEEEecChhhccCCHH-------------------------------HHHHHHHHHhcCc--eEEEEeCCCCcH--
Confidence 99999999999999976544 6799999999993 323334444321
Q ss_pred cCCcccchHHHHHHHHHHHH---hcCCcCCCc----------ccCCCHHHHHHHHHhCCce
Q 037735 203 VNNAAGSFYNTFGSCLVELT---KMGILSKEK----------MYNPTPKELEGIIQRNGNF 250 (329)
Q Consensus 203 ~~~~~~~~~~~l~~a~~~l~---~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f 250 (329)
+...+-..|..-+ --++++... --+|+.+|+.+.+++.+.+
T Consensus 153 -------~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~ 206 (226)
T PRK05785 153 -------IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADI 206 (226)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCc
Confidence 1111111111110 112222222 4468999999999987433
No 29
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.05 E-value=6.2e-09 Score=94.41 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=96.9
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccccccc
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~l 120 (329)
+|+|+|||+|..+..+.+ . .|..+++..|+..+.....-+.+.. .+.-|.. +++....
T Consensus 2 ~vLDiGcG~G~~~~~la~--------~-------~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~---~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAE--------R-------HPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFY---RDSAKDP 63 (224)
T ss_pred eEEEECCCCCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEe---cccccCC
Confidence 699999999998887764 2 2335788999977665544333321 1112333 2443333
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+| +++|+|+|..++|++.+ +..+|+..++.|+|||++++..+..+...
T Consensus 64 ~~-~~fD~I~~~~~l~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 111 (224)
T smart00828 64 FP-DTYDLVFGFEVIHHIKD-------------------------------KMDLFSNISRHLKDGGHLVLADFIANLLS 111 (224)
T ss_pred CC-CCCCEeehHHHHHhCCC-------------------------------HHHHHHHHHHHcCCCCEEEEEEcccccCc
Confidence 44 58999999999999643 34889999999999999999876543211
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP 261 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~ 261 (329)
... . +....|+++.+++.+.+++. +|++.+.+.+..+
T Consensus 112 ~~~-------------------~----~~~~~~~~s~~~~~~~l~~~-Gf~~~~~~~~~~~ 148 (224)
T smart00828 112 AIE-------------------H----EETTSYLVTREEWAELLARN-NLRVVEGVDASLE 148 (224)
T ss_pred ccc-------------------c----cccccccCCHHHHHHHHHHC-CCeEEEeEECcHh
Confidence 100 0 00016789999999999988 5999888776443
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.03 E-value=3e-09 Score=99.65 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=98.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..++.+.... .+..+|+..|...++....-+... -.+--|.. +++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d~~~ 139 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GEIEA 139 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cchhh
Confidence 45699999999998877665421 233579999998777665433221 11122333 45644
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+|++++|+++|+.++||..+. ...|+...+.|+|||+|+++-+....
T Consensus 140 l~~~~~~fD~Vi~~~v~~~~~d~-------------------------------~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 140 LPVADNSVDVIISNCVINLSPDK-------------------------------ERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred CCCCCCceeEEEEcCcccCCCCH-------------------------------HHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 44788999999999999995433 36689999999999999998664332
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. .+.+...+.-..... ....+.+|+.++++..| |...++...
T Consensus 189 ~~----------~~~~~~~~~~~~~~~------~~~~~~~e~~~~l~~aG-f~~v~i~~~ 231 (272)
T PRK11873 189 EL----------PEEIRNDAELYAGCV------AGALQEEEYLAMLAEAG-FVDITIQPK 231 (272)
T ss_pred CC----------CHHHHHhHHHHhccc------cCCCCHHHHHHHHHHCC-CCceEEEec
Confidence 11 112222222111111 23468899999999884 887766543
No 31
>PRK06202 hypothetical protein; Provisional
Probab=99.02 E-value=6.3e-09 Score=95.28 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=99.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|.++..+.... ++. .|..+++..|+..++....-+.......-+..+.... ..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~--------~~~---g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~---l~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA--------RRD---GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDE---LV 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH--------HhC---CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccc---cc
Confidence 456799999999999988776422 111 3446899999998876655443322111222222111 12
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+++|+.++||+.+. ++..+|+..++.++ |.+++.-+.++..
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~-----------------------------~~~~~l~~~~r~~~--~~~~i~dl~~~~~- 172 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA-----------------------------EVVRLLADSAALAR--RLVLHNDLIRSRL- 172 (232)
T ss_pred ccCCCccEEEECCeeecCChH-----------------------------HHHHHHHHHHHhcC--eeEEEeccccCHH-
Confidence 478899999999999998641 34578888888887 6666666665531
Q ss_pred cccCCcccchHHHHHHHHHHHHhcC-CcCCCc----ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMG-ILSKEK----MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG-~i~~~~----~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+.... ........| .+..+. .-+++.+|+.+.+++ +|++.+...+.
T Consensus 173 ---------~~~~~~-~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~--Gf~~~~~~~~~ 224 (232)
T PRK06202 173 ---------AYALFW-AGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ--GWRVERQWPFR 224 (232)
T ss_pred ---------HHHHHH-HHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC--CCeEEecccee
Confidence 111111 111111112 222222 456899999999997 69998877654
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.00 E-value=2.5e-09 Score=102.92 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=94.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..++. . .+ -.|+.-|....+..+. -+.+.....+.+ .++++ +
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~--------~-------g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~--~~~~i-e 181 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLG--------H-------GA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAIL--EPLGI-E 181 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHH--------c-------CC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEE--EECCH-H
Confidence 346999999999998877653 1 22 2688889776554431 111111111111 22344 4
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+-+.+++|+|+|+.+|+|+.++ ..+|+..++.|+|||.|++.++..+.
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~dp-------------------------------~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKSP-------------------------------LEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCCH-------------------------------HHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 55455689999999999996543 36799999999999999999875432
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.... .+.. ..-...| .+. .+.||.+++..++++. ||+.+++...
T Consensus 231 ~~~~------~l~p--~~ry~k~--~nv-----~flpS~~~L~~~L~~a-GF~~V~i~~~ 274 (314)
T TIGR00452 231 DLNT------VLVP--KDRYAKM--KNV-----YFIPSVSALKNWLEKV-GFENFRILDV 274 (314)
T ss_pred cccc------ccCc--hHHHHhc--ccc-----ccCCCHHHHHHHHHHC-CCeEEEEEec
Confidence 1100 0000 0001111 011 5568999999999988 4998776643
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.99 E-value=2.1e-09 Score=96.44 Aligned_cols=137 Identities=17% Similarity=0.281 Sum_probs=89.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|.++..+.+ + ..+|+.-|+..+....+-+.... ..+ -+.. +++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~---~d~~~ 89 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAV---VDLNN 89 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe---cChhh
Confidence 347899999999999988864 1 15799999987654443222211 011 1222 34533
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE-EecccC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL-VMFSVP 197 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~-~~~g~~ 197 (329)
..+ ++++|+|+|+.++||++. .|...+++..++-|+|||++++ ..+...
T Consensus 90 ~~~-~~~fD~I~~~~~~~~~~~-----------------------------~~~~~~l~~i~~~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 90 LTF-DGEYDFILSTVVLMFLEA-----------------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTA 139 (197)
T ss_pred CCc-CCCcCEEEEecchhhCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 223 467999999999999752 2456889999999999999654 444433
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+. +. ..|. .+..+.+|+.+.++ +|++.+.+.
T Consensus 140 ~~-~~--------------------~~~~-----~~~~~~~el~~~~~---~~~~~~~~~ 170 (197)
T PRK11207 140 DY-PC--------------------TVGF-----PFAFKEGELRRYYE---GWEMVKYNE 170 (197)
T ss_pred CC-CC--------------------CCCC-----CCccCHHHHHHHhC---CCeEEEeeC
Confidence 21 10 0111 34468899998887 499887753
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.93 E-value=5.2e-09 Score=93.80 Aligned_cols=138 Identities=14% Similarity=0.229 Sum_probs=89.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~ 119 (329)
++.+|+|+|||+|.++..+.+ + ..+|+.-|+..++...+-+... .....+.. +++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~---~d~-~~ 88 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNPASIASVLDMKARENLPLRTDA---YDI-NA 88 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEe---ccc-hh
Confidence 357999999999999998874 1 1579999998776655432221 10111122 223 22
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
..+++++|+|+|+.++||++. .|+..+++..++-|+|||++++...-..+.
T Consensus 89 ~~~~~~fD~I~~~~~~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~lli~~~~~~~~ 139 (195)
T TIGR00477 89 AALNEDYDFIFSTVVFMFLQA-----------------------------GRVPEIIANMQAHTRPGGYNLIVAAMDTAD 139 (195)
T ss_pred ccccCCCCEEEEecccccCCH-----------------------------HHHHHHHHHHHHHhCCCcEEEEEEecccCC
Confidence 223468999999999999753 145588999999999999966654332221
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.+.. ..+ -|-.+++|+.+.+. .|++.+.+.
T Consensus 140 ~~~~-----~~~--------------------~~~~~~~el~~~f~---~~~~~~~~e 169 (195)
T TIGR00477 140 YPCH-----MPF--------------------SFTFKEDELRQYYA---DWELLKYNE 169 (195)
T ss_pred CCCC-----CCc--------------------CccCCHHHHHHHhC---CCeEEEeec
Confidence 1100 000 34578999999885 288887774
No 35
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.89 E-value=8.5e-09 Score=95.26 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=115.1
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-----CCC-cceeeeccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-----PQS-RSYYAAGVP 113 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-----~~~-~~~f~~gvp 113 (329)
+.+..+++|++||||..|+.+++.+ ....+ .-+-+|+..|+..++.+---+.- ... +-.|++|
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v--------~s~~~-~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~-- 166 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHV--------KSQFG-DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG-- 166 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhh--------ccccC-CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC--
Confidence 3456899999999999999998744 11111 22468999999988877643322 111 1345554
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.....||++++|...+++.+--+.+++ +-|++.+|.|||||++.+.-
T Consensus 167 -dAE~LpFdd~s~D~yTiafGIRN~th~~-------------------------------k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 167 -DAEDLPFDDDSFDAYTIAFGIRNVTHIQ-------------------------------KALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred -CcccCCCCCCcceeEEEecceecCCCHH-------------------------------HHHHHHHHhcCCCcEEEEEE
Confidence 6866669999999999999999877766 44999999999999999999
Q ss_pred cccCCCCcccCCcccchHH---HHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeE-EE
Q 037735 194 FSVPDGIPLVNNAAGSFYN---TFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIER-ME 256 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~---~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~-~e 256 (329)
|..-+..++........++ .+.+.+......+..=.+. --+|+.||+...+++.| |.... .|
T Consensus 215 Fskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaG-F~~~~~ye 281 (296)
T KOG1540|consen 215 FSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAG-FSSVNGYE 281 (296)
T ss_pred ccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcC-Cccccccc
Confidence 8876633221111222222 2233333332333111111 55799999999999984 88775 54
No 36
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.88 E-value=7.9e-09 Score=93.68 Aligned_cols=140 Identities=20% Similarity=0.149 Sum_probs=100.3
Q ss_pred cchHHHhHH---HHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceE
Q 037735 8 HSYASNSAY---QSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQV 84 (329)
Q Consensus 8 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v 84 (329)
.-|.+|+.+ |..+.+++++++.- + .+++.-|||+|||||--+..+- .+.-++
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLal--p------~~~~~~iLDIGCGsGLSg~vL~-----------------~~Gh~w 75 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLAL--P------GPKSGLILDIGCGSGLSGSVLS-----------------DSGHQW 75 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhhC--C------CCCCcEEEEeccCCCcchheec-----------------cCCceE
Confidence 457888865 77777887777661 1 2357889999999998766653 334689
Q ss_pred EecCCCcchHHhhh-hcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHH
Q 037735 85 FFNDHSDNDFNTLF-KSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEA 163 (329)
Q Consensus 85 ~~nDLp~ndfn~lf-~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~a 163 (329)
+-.|....|....- +.+.. . ++.+.=| .+-.|+++++|-++|-+|+|||-+...+.-|.
T Consensus 76 iGvDiSpsML~~a~~~e~eg--d-lil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P--------------- 135 (270)
T KOG1541|consen 76 IGVDISPSMLEQAVERELEG--D-LILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSLHVP--------------- 135 (270)
T ss_pred EeecCCHHHHHHHHHhhhhc--C-eeeeecC--CCCCCCCCccceEEEeeeeeeecccCccccCh---------------
Confidence 99999988877755 33331 1 2222222 35569999999999999999987654331111
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 164 YAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 164 y~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
++.+.+|+..-...|++|++-++.+.-..
T Consensus 136 -----~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 136 -----KKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred -----HHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 45678999999999999999999886443
No 37
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.87 E-value=1.7e-08 Score=94.87 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=72.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...+|+|+|||+|..+..+.+.+ +. ....+++..|+..++....-+..+. ..|..+ +..+-.|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~----~~~~~v~giD~s~~~l~~A~~~~~~--~~~~~~---d~~~lp~ 147 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------PE----ITTMQLFGLDISKVAIKYAAKRYPQ--VTFCVA---SSHRLPF 147 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------cc----ccCCeEEEECCCHHHHHHHHHhCCC--CeEEEe---ecccCCC
Confidence 44689999999999998887522 11 1114799999998877766554432 234443 4545568
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
+++++|+|+|..+ |.. ++.-++.|+|||+|++..++..+
T Consensus 148 ~~~sfD~I~~~~~-------~~~-------------------------------~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 148 ADQSLDAIIRIYA-------PCK-------------------------------AEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred cCCceeEEEEecC-------CCC-------------------------------HHHHHhhccCCCEEEEEeCCCcc
Confidence 8999999998754 322 56677899999999999887654
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.86 E-value=2.5e-09 Score=84.65 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=54.8
Q ss_pred EeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---CcceeeeccccccccccCCC
Q 037735 47 ADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSSLFPK 123 (329)
Q Consensus 47 aDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~lfp~ 123 (329)
+|+|||+|.++..++. . .|..+++..|....+....-+.+.. .....+.....+.. ...+.
T Consensus 1 LdiGcG~G~~~~~l~~--------~-------~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLE--------E-------LPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF-DYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHH--------H-------C-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS----CCC-
T ss_pred CEeCccChHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh-hcccc
Confidence 6999999999999986 2 2447999999998887443333221 11112222222221 12233
Q ss_pred CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 124 SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 124 ~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
+++|+|+++.++||+ + |+..+|+..++-|+|||+|
T Consensus 65 ~~fD~V~~~~vl~~l---~----------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL---E----------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS-----S-----------------------------HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh---h----------------------------hHHHHHHHHHHHcCCCCCC
Confidence 799999999999998 3 4568899999999999986
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.84 E-value=8.1e-09 Score=88.36 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=77.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh---cCCCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK---SLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~---~l~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+.. .|..+++..|+...+.+..-+ ...-..-.|..+ ++.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~--------------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~---d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL--------------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG---DIED 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS--------------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES---BTTC
T ss_pred CCCEEEEecCcCcHHHHHHHHhc--------------CCCCEEEEEECcHHHHHHhhcccccccccccceEEe---ehhc
Confidence 45899999999999999987411 344689999999877666533 333323345655 4533
Q ss_pred --ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 --SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 --~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.++ +.+|+|+++.++||+.+ ...+|+...+-|++||.++++.+.
T Consensus 66 l~~~~~-~~~D~I~~~~~l~~~~~-------------------------------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 66 LPQELE-EKFDIIISNGVLHHFPD-------------------------------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GCGCSS-TTEEEEEEESTGGGTSH-------------------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccC-CCeeEEEEcCchhhccC-------------------------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 1134 89999999999999653 347799999999999999999887
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.82 E-value=2.4e-08 Score=94.74 Aligned_cols=137 Identities=17% Similarity=0.244 Sum_probs=89.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~l 120 (329)
+.+|+|+|||+|.++..+.+ + ..+|+.-|........+-+.... ..--+.. +++. ..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~---~D~~-~~ 179 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQQSLENLQEIAEKENLNIRTGL---YDIN-SA 179 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEE---echh-cc
Confidence 35899999999999988864 1 25899999987665543322211 0111122 2332 22
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
-+++++|+|+|+.++|+++. .++..+|+...+.|+|||++++...-..+..
T Consensus 180 ~~~~~fD~I~~~~vl~~l~~-----------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~ 230 (287)
T PRK12335 180 SIQEEYDFILSTVVLMFLNR-----------------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY 230 (287)
T ss_pred cccCCccEEEEcchhhhCCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEEecccccC
Confidence 23788999999999999752 2566889999999999999777554322211
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+.. .-+ .+..+.+|+++.+.. |+|.+.++
T Consensus 231 ~~~-----~p~--------------------~~~~~~~el~~~~~~---~~i~~~~e 259 (287)
T PRK12335 231 PCP-----MPF--------------------SFTFKEGELKDYYQD---WEIVKYNE 259 (287)
T ss_pred CCC-----CCC--------------------CcccCHHHHHHHhCC---CEEEEEec
Confidence 100 000 455789999998763 99988753
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.79 E-value=3.3e-07 Score=86.68 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=100.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
+-.+|||+|||-|..++.+.+ +| ..+|....+..+....+-+.+ .-. +.-+..+ +|
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~--------~~--------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~---D~- 121 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAE--------RY--------GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ---DY- 121 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHH--------HH----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES----G-
T ss_pred CCCEEEEeCCCccHHHHHHHH--------Hc--------CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe---ec-
Confidence 347999999999999999886 33 157888888876655543222 211 1223333 44
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..+ +. ++|-|+|--++.-+ + .+++..||+..++-|+|||++++..++..
T Consensus 122 ~~~-~~-~fD~IvSi~~~Ehv---g--------------------------~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 122 RDL-PG-KFDRIVSIEMFEHV---G--------------------------RKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp GG-----S-SEEEEESEGGGT---C--------------------------GGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred ccc-CC-CCCEEEEEechhhc---C--------------------------hhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 232 32 89999999887664 2 24677999999999999999999988766
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHh
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMR 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iR 277 (329)
+.....+.....-| ++.=+=-| -+.|+.+|+...+++. +|+|.+.+.. +..++.++|
T Consensus 171 ~~~~~~~~~~~~~~------i~kyiFPg------g~lps~~~~~~~~~~~-~l~v~~~~~~----------~~hY~~Tl~ 227 (273)
T PF02353_consen 171 DPPYHAERRSSSDF------IRKYIFPG------GYLPSLSEILRAAEDA-GLEVEDVENL----------GRHYARTLR 227 (273)
T ss_dssp -HHHHHCTTCCCHH------HHHHTSTT------S---BHHHHHHHHHHT-T-EEEEEEE-----------HHHHHHHHH
T ss_pred cccchhhcCCCceE------EEEeeCCC------CCCCCHHHHHHHHhcC-CEEEEEEEEc----------CcCHHHHHH
Confidence 53211000000000 12111123 4679999999988877 5999887766 456777888
Q ss_pred hhhhhHHh
Q 037735 278 AVYEGLVK 285 (329)
Q Consensus 278 a~~e~~~~ 285 (329)
+|.+.+.+
T Consensus 228 ~W~~~f~~ 235 (273)
T PF02353_consen 228 AWRENFDA 235 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.78 E-value=1.3e-08 Score=91.66 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=88.8
Q ss_pred HHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHH
Q 037735 16 YQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFN 95 (329)
Q Consensus 16 ~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn 95 (329)
+|+.+.....|.+-.........+.....+|+|+|||+|..|..+.+ . .|..+++..|....+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~--------~-------~p~~~v~gVD~s~~~i~ 78 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAK--------A-------NPDINFIGIEVHEPGVG 78 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHH--------H-------CCCccEEEEEechHHHH
Confidence 45555555555553221111111233567899999999999998864 2 24468999999887777
Q ss_pred hhhhcCC---CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 96 TLFKSLP---QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 96 ~lf~~l~---~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
.+-+.+. ..+-.|..+..-..+.+.++++++|.+++++..+|....... . +.+.
T Consensus 79 ~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~----~-------------------~~~~ 135 (202)
T PRK00121 79 KALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHK----R-------------------RLVQ 135 (202)
T ss_pred HHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccc----c-------------------ccCC
Confidence 6654331 112234554320112344788999999999988886532210 0 0123
Q ss_pred HHHHHHHHHHhccCceEEEEec
Q 037735 173 QTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..||+.-++.|+|||.+++++.
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcC
Confidence 5789999999999999999873
No 43
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.77 E-value=1.8e-08 Score=80.98 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=74.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C-CCcceeeecccccc-c
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P-QSRSYYAAGVPGSF-Y 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~-~~~~~f~~gvpgsF-y 117 (329)
..+|+|+|||+|..++.+.+ + .|..+++.-|.........-+.. . ..+-.|..+ ++ +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~ 63 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--------L-------FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQG---DAEF 63 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--------H-------HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES---CCHG
T ss_pred CCEEEEEcCcCCHHHHHHHh--------c-------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC---cccc
Confidence 36899999999999999985 2 24578999999887777765555 1 122335554 45 2
Q ss_pred cccCCCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..- ..+.+|+++++. ++|++-.. .+..++|+...+.|+|||+|++..
T Consensus 64 ~~~-~~~~~D~v~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 64 DPD-FLEPFDLVICSGFTLHFLLPL----------------------------DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GTT-TSSCEEEEEECSGSGGGCCHH----------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccc-cCCCCCEEEECCCccccccch----------------------------hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 222 334599999999 77754321 255688999999999999999975
No 44
>PRK06922 hypothetical protein; Provisional
Probab=98.75 E-value=2.4e-08 Score=103.49 Aligned_cols=113 Identities=22% Similarity=0.157 Sum_probs=80.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYS- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~- 118 (329)
+..+|+|+|||+|..+..+.. + .|..+++..|++.++....-+.++.. +..++.| +...
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~--------~-------~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~g---Da~dL 479 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEE--------E-------TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKG---DAINL 479 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEc---chHhC
Confidence 357999999999988877654 2 34579999999998877665443221 1223444 3322
Q ss_pred -ccCCCCceeEEEeccceecc-cCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 -SLFPKSSLHFVHSSYTLHWL-SKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 -~lfp~~s~dl~~Ss~alhWL-s~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..||++++|++++++++||+ +.+|.. .++ .+|...+|+...+.|+|||.+++.-
T Consensus 480 p~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~---------------------~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 480 SSSFEKESVDTIVYSSILHELFSYIEYEGKKFN---------------------HEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred ccccCCCCEEEEEEchHHHhhhhhccccccccc---------------------HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 23789999999999999965 445522 011 1467799999999999999999963
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=5.9e-07 Score=84.96 Aligned_cols=221 Identities=13% Similarity=0.160 Sum_probs=135.0
Q ss_pred HHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchH
Q 037735 15 AYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDF 94 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndf 94 (329)
..|.+.++.+...+. -.+-.+|||||||-|..++.+++ +| ...|+..+|..|..
T Consensus 55 eAQ~~k~~~~~~kl~----------L~~G~~lLDiGCGWG~l~~~aA~--------~y--------~v~V~GvTlS~~Q~ 108 (283)
T COG2230 55 EAQRAKLDLILEKLG----------LKPGMTLLDIGCGWGGLAIYAAE--------EY--------GVTVVGVTLSEEQL 108 (283)
T ss_pred HHHHHHHHHHHHhcC----------CCCCCEEEEeCCChhHHHHHHHH--------Hc--------CCEEEEeeCCHHHH
Confidence 455555555444433 23458999999999999999886 33 26899999998887
Q ss_pred HhhhhcC---CCCcc--eeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 95 NTLFKSL---PQSRS--YYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 95 n~lf~~l---~~~~~--~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
...-+.+ .-..+ +-..+ + .- | ++.+|=|+|.=+++-+..
T Consensus 109 ~~~~~r~~~~gl~~~v~v~l~d----~-rd-~-~e~fDrIvSvgmfEhvg~----------------------------- 152 (283)
T COG2230 109 AYAEKRIAARGLEDNVEVRLQD----Y-RD-F-EEPFDRIVSVGMFEHVGK----------------------------- 152 (283)
T ss_pred HHHHHHHHHcCCCcccEEEecc----c-cc-c-ccccceeeehhhHHHhCc-----------------------------
Confidence 7654432 11111 11221 1 11 1 222888888888887653
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCc
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGN 249 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~ 249 (329)
+-+..||+...+-|+|||+|++-.++..+.... . ..-| +..-+=-| -++|+..++.....+. +
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~---~~~~------i~~yiFPg------G~lPs~~~i~~~~~~~-~ 215 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R---FPDF------IDKYIFPG------GELPSISEILELASEA-G 215 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c---chHH------HHHhCCCC------CcCCCHHHHHHHHHhc-C
Confidence 235699999999999999999999987653210 0 0011 12222223 5779999999998877 5
Q ss_pred eEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHhhhcC---hHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEE
Q 037735 250 FTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFG---DEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILL 326 (329)
Q Consensus 250 f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~~~~g---~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L 326 (329)
|.+...+.+. ..++.+++.|-+.+-. ++. ...-+.++.+|+..++.....+ +....-...++|
T Consensus 216 ~~v~~~~~~~----------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~F---r~~~~~~~q~~~ 281 (283)
T COG2230 216 FVVLDVESLR----------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAAF---RAGYIDVFQFTL 281 (283)
T ss_pred cEEehHhhhc----------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHh---ccCCceEEEEEe
Confidence 8887666553 3467777777765433 232 2233444555666666656555 333333333555
Q ss_pred Ee
Q 037735 327 KR 328 (329)
Q Consensus 327 ~r 328 (329)
+|
T Consensus 282 ~k 283 (283)
T COG2230 282 TK 283 (283)
T ss_pred eC
Confidence 43
No 46
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.72 E-value=2.4e-07 Score=83.74 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=93.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--C-cceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--S-RSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~-~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+ . . ..++..|+........-+.+.. . ...|..+ ++-+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~--------~-------~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~~ 104 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR--------L-------G--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT---SVED 104 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh--------c-------C--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC---CHHH
Confidence 467999999999998877653 1 1 3588899876654443332211 1 1223332 3422
Q ss_pred ccCC-CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 119 SLFP-KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 119 ~lfp-~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
...+ ++++|+++++.++|+..++ ..+|+...+-|+|||.++++...++
T Consensus 105 ~~~~~~~~~D~i~~~~~l~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 105 LAEKGAKSFDVVTCMEVLEHVPDP-------------------------------QAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred hhcCCCCCccEEEehhHHHhCCCH-------------------------------HHHHHHHHHhcCCCcEEEEEecCCC
Confidence 2322 4789999999999986533 3789999999999999998876433
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc---ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK---MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~---~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
... .+..+.. .++.. +...... ..+.+.+++.++++.. +|+|..+..+
T Consensus 154 ~~~---------~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~-G~~i~~~~~~ 204 (224)
T TIGR01983 154 PKS---------YLLAIVG--AEYIL-RIVPKGTHDWEKFIKPSELTSWLESA-GLRVKDVKGL 204 (224)
T ss_pred chH---------HHHHHHh--hhhhh-hcCCCCcCChhhcCCHHHHHHHHHHc-CCeeeeeeeE
Confidence 110 1111000 11111 1111111 2356889999999977 5999887754
No 47
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.72 E-value=2.4e-07 Score=85.17 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=108.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc-----
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY----- 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy----- 117 (329)
...+.|+|||+|..++.+.. . ++ +|+..|..+.+.+-+-+.-+. .|.- +|-++-
T Consensus 34 h~~a~DvG~G~Gqa~~~iae--------~--------~k-~VIatD~s~~mL~~a~k~~~~--~y~~--t~~~ms~~~~v 92 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAE--------H--------YK-EVIATDVSEAMLKVAKKHPPV--TYCH--TPSTMSSDEMV 92 (261)
T ss_pred cceEEEeccCCCcchHHHHH--------h--------hh-hheeecCCHHHHHHhhcCCCc--cccc--CCccccccccc
Confidence 34889999999965555543 2 22 799999999887744333221 1111 222222
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..+=+++|||+|++.-|+||+ |+.+|++.-.+.|++.|-++....=++
T Consensus 93 ~L~g~e~SVDlI~~Aqa~HWF--------------------------------dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 93 DLLGGEESVDLITAAQAVHWF--------------------------------DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred cccCCCcceeeehhhhhHHhh--------------------------------chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 333469999999999999996 566999999999999997666665554
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCc---eEEeEEEEeec--C-ccccc--ccH
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGN---FTIERMEKMTN--P-KQQVL--CSA 269 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~---f~i~~~e~~~~--~-~~~~~--~~~ 269 (329)
+... |.+.-.....+....+ -|+ ...+...+.+.-. |..+++..... + .+..+ +.-
T Consensus 141 d~v~---------~pE~dsv~~r~~~~~~-----p~~--r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~~l~~~~~lsl 204 (261)
T KOG3010|consen 141 DFVD---------WPEFDSVMLRLYDSTL-----PYW--RSPLRNLLFDGYKTIEFPFESVGMGSQGKPKTLEIPHTLSL 204 (261)
T ss_pred CCcC---------CHHHHHHHHHHhhccC-----chh--hhHHHHhhccccccccccccccCCCCCCCceeehhhHHHHH
Confidence 4332 2222223333333221 343 2223333332211 33333222110 0 11111 123
Q ss_pred HHHhhhHhhhhhhHHhhhcCh-HHHHHHHHHHHH
Q 037735 270 SDLAVAMRAVYEGLVKEHFGD-EFVDKIFNHFAT 302 (329)
Q Consensus 270 ~~~~~~iRa~~e~~~~~~~g~-~~~d~~f~ry~~ 302 (329)
..++.++|+|..-.-++|=|. .+.+.+-.+++.
T Consensus 205 ~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~ 238 (261)
T KOG3010|consen 205 EGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEE 238 (261)
T ss_pred HHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHh
Confidence 558899999998777777664 344446555544
No 48
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.67 E-value=1.4e-07 Score=85.45 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=63.7
Q ss_pred hHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC
Q 037735 24 LRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ 103 (329)
Q Consensus 24 ~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~ 103 (329)
...++.+.+..+ ++..+|+|+|||+|.++..+.. . .|..+++..|+..++....-+.++.
T Consensus 30 ~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~--------~-------~~~~~v~giDiS~~~l~~A~~~~~~ 89 (204)
T TIGR03587 30 KLAMFARALNRL-----PKIASILELGANIGMNLAALKR--------L-------LPFKHIYGVEINEYAVEKAKAYLPN 89 (204)
T ss_pred HHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHhhCCC
Confidence 444555555443 3457899999999999988864 1 2346899999998887766554443
Q ss_pred CcceeeeccccccccccCCCCceeEEEeccceeccc
Q 037735 104 SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 104 ~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs 139 (329)
.-+.. +++.+ .+|++++|+|+++.+||+++
T Consensus 90 --~~~~~---~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 90 --INIIQ---GSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred --CcEEE---eeccC-CCCCCCEEEEEECChhhhCC
Confidence 12333 35655 78999999999999998764
No 49
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.66 E-value=5.8e-07 Score=82.03 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=93.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . ..+++..|+..+.....-+.+. ....-+..+ ++-..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 107 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMAR--------L---------GADVTGIDASEENIEVARLHALESGLKIDYRQT---TAEEL 107 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------c---------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEec---CHHHh
Confidence 457899999999998776643 1 1368888987665443322211 111112222 23222
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
+ .+++.+|+++++..+++..+. ..+|+...+-|+|||+|+++.+++..
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~v~~~~~~~ 156 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVPDP-------------------------------ASFVRACAKLVKPGGLVFFSTLNRNL 156 (233)
T ss_pred hhhcCCCccEEEEhhHhhccCCH-------------------------------HHHHHHHHHHcCCCcEEEEEecCCCh
Confidence 2 356899999999988885432 36799999999999999998775432
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCC-Cc-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSK-EK-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~-~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. ..+.... .+.+..++-.. .. ..+.+++|+.++++.. +|+++.....
T Consensus 157 ~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~v~~~~~ 206 (233)
T PRK05134 157 KS--------YLLAIVG---AEYVLRMLPKGTHDYKKFIKPSELAAWLRQA-GLEVQDITGL 206 (233)
T ss_pred HH--------HHHHHhh---HHHHhhhcCcccCchhhcCCHHHHHHHHHHC-CCeEeeeeeE
Confidence 10 0111110 11111111111 11 4567899999999988 5999877643
No 50
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.64 E-value=3.7e-07 Score=87.15 Aligned_cols=153 Identities=10% Similarity=0.125 Sum_probs=92.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+| ......-+.+.. ...+ ..++|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~--------~-------~p~~~~~~~D~~-~~~~~a~~~~~~~gl~~rv--~~~~~d~~ 209 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLK--------H-------FPELDSTILNLP-GAIDLVNENAAEKGVADRM--RGIAVDIY 209 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHH--------H-------CCCCEEEEEecH-HHHHHHHHHHHhCCccceE--EEEecCcc
Confidence 3457999999999998888875 3 356788888996 344333222211 1122 22456888
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+..+|+ .|+++.+..+|-.++. +-..+|+..++.|+|||++++.=+-.+
T Consensus 210 ~~~~~~--~D~v~~~~~lh~~~~~-----------------------------~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 210 KESYPE--ADAVLFCRILYSANEQ-----------------------------LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCCCCC--CCEEEeEhhhhcCChH-----------------------------HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 655664 5999888888842211 224679999999999999999855333
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
+... ..+..+...+.. .|+... -..+++.+|+.+++++.| |+..+
T Consensus 259 ~~~~-------~~~~~~~~~~~~---~~~~~~-~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 259 DPEN-------PNFDYLSHYILG---AGMPFS-VLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred CCCC-------chhhHHHHHHHH---cccccc-cccCCCHHHHHHHHHHcC-CCeeE
Confidence 2111 011222222111 121100 023466899999999984 87554
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.64 E-value=6.1e-08 Score=97.88 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=73.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccc--cc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFY--SS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy--~~ 119 (329)
..+|+|+|||+|.+|..+.. .+ .+|+..|+..++.....+..+.. ...|+.+ ++. ..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~--------~~---------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~---d~~~~~~ 97 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAK--------KA---------GQVIALDFIESVIKKNESINGHYKNVKFMCA---DVTSPDL 97 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHh--------hC---------CEEEEEeCCHHHHHHHHHHhccCCceEEEEe---ccccccc
Confidence 45899999999999999874 11 37899998877665432211111 1234444 343 23
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+|++++|+|+|+.++||+++. ++..+|+..++.|+|||.|++.=
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~~-----------------------------~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSDK-----------------------------EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCHH-----------------------------HHHHHHHHHHHhcCCCeEEEEEe
Confidence 3788999999999999998541 35688999999999999998853
No 52
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.62 E-value=1.9e-07 Score=87.78 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCceEEEeeeCCCCcc----cHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------C--c
Q 037735 41 PNTFRIADFGCSTGPN----TFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------S--R 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~n----T~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------~--~ 105 (329)
..+.+|+|+|||||.- ++.+.+ .+... ..+.++|+..|+...+....-+...+ . .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e--------~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAE--------TLPKA--REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA 167 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHH--------Hhhhc--CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence 3569999999999974 333332 11110 12357999999998877665443321 0 1
Q ss_pred ceeeec----------------cccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 106 SYYAAG----------------VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 106 ~~f~~g----------------vpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
.||... ..++..+..+|.+++|+|+|.++|||+++.
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~---------------------------- 219 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEP---------------------------- 219 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHH----------------------------
Confidence 233211 011332333568899999999999998632
Q ss_pred hcHHHHHHHHHHHhccCceEEEEe
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+..++|+.-++.|+|||+|+++-
T Consensus 220 -~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 220 -TQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred -HHHHHHHHHHHHhCCCeEEEEEC
Confidence 33478999999999999999753
No 53
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.62 E-value=3.9e-07 Score=82.77 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccc---
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS--- 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~--- 119 (329)
..+|+|+|||||..|..+++.. .+.-+|+.-|+.. .+ .+++ -.++.| ++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~~--~~----~~~~--v~~i~~---D~~~~~~~ 106 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDILP--MD----PIVG--VDFLQG---DFRDELVL 106 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEeccc--cc----CCCC--cEEEec---CCCChHHH
Confidence 4689999999999998887522 2335899999854 11 1222 234443 56542
Q ss_pred -----cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 -----LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 -----lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++++++|+|+|+.+.||..... . +... + .......|+...+.|+|||.+++..+
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~-~--------------d~~~----~-~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPA-V--------------DIPR----A-MYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChH-H--------------HHHH----H-HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 26788999999999999954211 0 0000 0 01135789999999999999999887
Q ss_pred ccCC
Q 037735 195 SVPD 198 (329)
Q Consensus 195 g~~~ 198 (329)
..+.
T Consensus 167 ~~~~ 170 (209)
T PRK11188 167 QGEG 170 (209)
T ss_pred cCcC
Confidence 6554
No 54
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.57 E-value=8.5e-08 Score=76.36 Aligned_cols=98 Identities=26% Similarity=0.333 Sum_probs=67.4
Q ss_pred EEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccccCCC
Q 037735 46 IADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSLFPK 123 (329)
Q Consensus 46 IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~lfp~ 123 (329)
|+|+|||+|.++..+... + +. .|+.+++.-|+..++....-+... ..+.-|+.+ ++-+-.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~--------~-~~---~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~---D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR--------F-DA---GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQA---DARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHH--------S---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEES---CTTCHHHHS
T ss_pred CEEeecCCcHHHHHHHHH--------h-hh---cccceEEEEECCHHHHHHHHHhchhcCCceEEEEC---CHhHCcccC
Confidence 799999999999999863 2 11 244799999999988776655541 113345555 453333678
Q ss_pred CceeEEEeccc-eecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 124 SSLHFVHSSYT-LHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 124 ~s~dl~~Ss~a-lhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
+++|+++++.. +|++++ +++.++|+..++-|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~~~-----------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSP-----------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGSSH-----------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCCCH-----------------------------HHHHHHHHHHHHHhCCCC
Confidence 89999999655 998763 366799999999999998
No 55
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.57 E-value=6.6e-07 Score=81.13 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=91.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy 117 (329)
...+|+|+|||+|..+..+.. . ...++..|...++....-+.++.. +..|..+ ++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~--------~---------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~ 114 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK--------R---------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN---DLL 114 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---Chh
Confidence 467999999999998888753 1 147899999887766554444321 2234433 442
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
. + | +++|+++++..++++.. .++..+++..++-+++|+.+.++ +.
T Consensus 115 ~-~-~-~~fD~ii~~~~l~~~~~-----------------------------~~~~~~l~~i~~~~~~~~~i~~~---~~ 159 (219)
T TIGR02021 115 S-L-C-GEFDIVVCMDVLIHYPA-----------------------------SDMAKALGHLASLTKERVIFTFA---PK 159 (219)
T ss_pred h-C-C-CCcCEEEEhhHHHhCCH-----------------------------HHHHHHHHHHHHHhCCCEEEEEC---CC
Confidence 2 2 3 89999999999877531 13456677777777766554432 11
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+. .+.. ...+.+... +.-.....++++++|+.++++..| |++.+.+...
T Consensus 160 ~~----------~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 160 TA----------WLAF-LKMIGELFP-GSSRATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ch----------HHHH-HHHHHhhCc-CcccccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 10 1111 111122111 100011177789999999999885 9999887653
No 56
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.56 E-value=5.7e-07 Score=80.21 Aligned_cols=142 Identities=16% Similarity=0.182 Sum_probs=84.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc--
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL-- 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l-- 120 (329)
..+|+|+|||+|.++..+.+ . ...+++.-|+...+....-+. ...++. +++...+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~--------~--------~~~~~~giD~s~~~i~~a~~~----~~~~~~---~d~~~~l~~ 70 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRD--------E--------KQVRGYGIEIDQDGVLACVAR----GVNVIQ---GDLDEGLEA 70 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHh--------c--------cCCcEEEEeCCHHHHHHHHHc----CCeEEE---EEhhhcccc
Confidence 45899999999998766643 1 123567778876554433211 112333 3453322
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+++|+.++||+.++. .+|+.-.+ ++|..++++.....
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d~~-------------------------------~~l~e~~r---~~~~~ii~~p~~~~-- 114 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRNPE-------------------------------EILDEMLR---VGRHAIVSFPNFGY-- 114 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcCHH-------------------------------HHHHHHHH---hCCeEEEEcCChhH--
Confidence 6789999999999999976532 45655444 56666666533221
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcC--CC---------cccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILS--KE---------KMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~--~~---------~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+.. .+. +...|... +. ...+++.+|+.+.++.. +|++.....+
T Consensus 115 ----------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~-Gf~v~~~~~~ 168 (194)
T TIGR02081 115 ----------WRV---RWS-ILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL-NLRILDRAAF 168 (194)
T ss_pred ----------HHH---HHH-HHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC-CCEEEEEEEe
Confidence 111 001 11111111 00 03468999999999999 5999988765
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.56 E-value=4.6e-07 Score=86.66 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=80.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~l 120 (329)
...+|+|+|||||..|..+++.. ....+++.-|+...+.....+.+... +..-+.++-|+|.+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l--------------~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDAL--------------RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhh--------------ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 34789999999999999998743 11268999999988877766655321 1121223345776533
Q ss_pred -CCCC----ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 -FPKS----SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 -fp~~----s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+|.. ...++++.+++++++. .|..+||+..++.|+|||+|++.+-.
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~-----------------------------~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTP-----------------------------EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 3433 4567778889999752 24568999999999999999998876
Q ss_pred cCC
Q 037735 196 VPD 198 (329)
Q Consensus 196 ~~~ 198 (329)
..+
T Consensus 180 ~~~ 182 (301)
T TIGR03438 180 VKD 182 (301)
T ss_pred CCC
Confidence 554
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=4.6e-07 Score=83.29 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred HhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC
Q 037735 25 RYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS 104 (329)
Q Consensus 25 ~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~ 104 (329)
..+|.+..+.+.......+.+|+++|||.|....-+++.. +.|.+.+|+.|...+--+.+-++-.-.
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNNRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCCCeEEEEcCCChHHHHHHHhccccc
Confidence 4556665555433222234589999999999888887511 244589999999887655543332111
Q ss_pred -cc--eeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHH
Q 037735 105 -RS--YYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQ 181 (329)
Q Consensus 105 -~~--~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~ 181 (329)
.. -|++-.-++=....++.+|+|+++.-+.| |-+++. -+.+-+....+
T Consensus 121 e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe--------------------------k~~~a~~nl~~ 171 (264)
T KOG2361|consen 121 ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE--------------------------KMQSVIKNLRT 171 (264)
T ss_pred hhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChH--------------------------HHHHHHHHHHH
Confidence 11 13322222223455677888888766664 444433 24466899999
Q ss_pred HhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--------ccCCCHHHHHHHHHhCCceEEe
Q 037735 182 ELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--------MYNPTPKELEGIIQRNGNFTIE 253 (329)
Q Consensus 182 eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--------~y~ps~eE~~~~i~~~g~f~i~ 253 (329)
-|+|||.|+|-=.|+.+.... +-. .+-.|++.- .|+-+.+|+.+++.+. ||..+
T Consensus 172 llKPGG~llfrDYg~~Dlaql----------------RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a-gf~~~ 233 (264)
T KOG2361|consen 172 LLKPGGSLLFRDYGRYDLAQL----------------RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA-GFEEV 233 (264)
T ss_pred HhCCCcEEEEeecccchHHHH----------------hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc-ccchh
Confidence 999999999999998874321 000 111122111 6888999999999998 48877
Q ss_pred EEEE
Q 037735 254 RMEK 257 (329)
Q Consensus 254 ~~e~ 257 (329)
+++.
T Consensus 234 ~~~~ 237 (264)
T KOG2361|consen 234 QLEV 237 (264)
T ss_pred cccc
Confidence 7664
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.52 E-value=1.8e-07 Score=83.71 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=76.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..+..+.. + .|+.+++..|+........-+.+.. ..+ .++.|..-.+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~--------~-------~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~ 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAK--------Q-------NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD 80 (194)
T ss_pred CCceEEEeCCCccHHHHHHHH--------h-------CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH
Confidence 345899999999999988874 2 3557899999987776665444321 112 344442212223
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++|++++|.+++++..+|..+.. . +.++ ....||+..++.|+|||.+++.+
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~~h-~---~~r~-------------------~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKKRH-N---KRRI-------------------TQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCCCc-c---cccc-------------------CCHHHHHHHHHHhCCCCEEEEEe
Confidence 346788999999999999954311 1 0000 01378999999999999999988
No 60
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.51 E-value=2.8e-06 Score=77.48 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=93.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------------Ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------------SRS 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------------~~~ 106 (329)
...+|||+|||.|.|+..+.+ + ..+|+..|+...-...+++.-.. .+-
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~--------~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE--------Q---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 346999999999999999974 1 26899999998766655442110 011
Q ss_pred eeeeccccccccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 107 YYAAGVPGSFYSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 107 ~f~~gvpgsFy~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
-|..| +|++.-. +...+|+++-..++|= +|.. +..++++...+-|+|
T Consensus 97 ~~~~~---D~~~~~~~~~~~fD~i~D~~~~~~---l~~~--------------------------~R~~~~~~l~~lLkp 144 (213)
T TIGR03840 97 EIFCG---DFFALTAADLGPVDAVYDRAALIA---LPEE--------------------------MRQRYAAHLLALLPP 144 (213)
T ss_pred EEEEc---cCCCCCcccCCCcCEEEechhhcc---CCHH--------------------------HHHHHHHHHHHHcCC
Confidence 12332 4544221 1346888888887773 4422 445789999999999
Q ss_pred CceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 186 GGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 186 GG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
||++++.++..+.... .|- .|.-+++|+++.+... |+|..++..+
T Consensus 145 gG~~ll~~~~~~~~~~----------------------~gp-----p~~~~~~eL~~~f~~~--~~i~~~~~~~ 189 (213)
T TIGR03840 145 GARQLLITLDYDQSEM----------------------AGP-----PFSVSPAEVEALYGGH--YEIELLESRD 189 (213)
T ss_pred CCeEEEEEEEcCCCCC----------------------CCc-----CCCCCHHHHHHHhcCC--ceEEEEeecc
Confidence 9998888776543211 011 4557899999998754 9998888653
No 61
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.48 E-value=2.9e-07 Score=82.66 Aligned_cols=140 Identities=17% Similarity=0.253 Sum_probs=85.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
++-++||+|||.|.||+-|.+ + .+.|..-|....-...+.+.... ...=+...-.++-+.-+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~--------~---------G~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~~~ 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS--------Q---------GFDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDFDF 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH--------T---------T-EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCBS-
T ss_pred CCCcEEEcCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhccc
Confidence 467999999999999999985 1 27899999987665554332110 00001111124433334
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
++.+|+|+|..++|.|... .+..+++...+.++|||++++.++-.....+
T Consensus 92 -~~~yD~I~st~v~~fL~~~-----------------------------~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p 141 (192)
T PF03848_consen 92 -PEEYDFIVSTVVFMFLQRE-----------------------------LRPQIIENMKAATKPGGYNLIVTFMETPDYP 141 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GG-----------------------------GHHHHHHHHHHTEEEEEEEEEEEEB--SSS-
T ss_pred -cCCcCEEEEEEEeccCCHH-----------------------------HHHHHHHHHHhhcCCcEEEEEEEecccCCCC
Confidence 4789999999999998631 3457789999999999999987664322211
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... -+ -+...+.|++.... .|+|.+.++
T Consensus 142 ~~~-----~~--------------------~f~~~~~EL~~~y~---dW~il~y~E 169 (192)
T PF03848_consen 142 CPS-----PF--------------------PFLLKPGELREYYA---DWEILKYNE 169 (192)
T ss_dssp -SS---------------------------S--B-TTHHHHHTT---TSEEEEEEE
T ss_pred CCC-----CC--------------------CcccCHHHHHHHhC---CCeEEEEEc
Confidence 100 00 34457889888766 399988764
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.44 E-value=1.1e-06 Score=71.45 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=64.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..+..+.+ + .|+.+++..|.........-+.+ .-.+..++.+ +....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ 81 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAAR--------L-------VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEG---DAPEA 81 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------H-------CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEec---ccccc
Confidence 45999999999999998875 2 23468999999876655543222 1111223332 22111
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+ ...+++|++++..+.+ ++..+++..++.|+|||.+++++.
T Consensus 82 ~~~~~~~~D~v~~~~~~~----------------------------------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGG----------------------------------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ChhhcCCCCEEEECCcch----------------------------------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 1 2235788888754322 234789999999999999999863
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.43 E-value=3.2e-06 Score=74.36 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=73.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.. . .+ +++..|+........-+++.. ....+.. +++++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~--------~-------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~ 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKG--------K-------GK--CILTTDINPFAVKELRENAKLNNVGLDVVM---TDLFKG 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHh--------c-------CC--EEEEEECCHHHHHHHHHHHHHcCCceEEEE---cccccc
Confidence 346899999999999888764 1 22 799999987665554433321 1112233 355553
Q ss_pred cCCCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+++|+++|+..+|........ +|.+-..+-.... ...+..||+...+.|+|||.+++...+
T Consensus 79 --~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 79 --VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDG-----------RKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred --cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCch-----------HHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 34589999999988866543211 1110000000000 112468899999999999999998744
No 64
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.40 E-value=5.3e-06 Score=80.02 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=88.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--------Ccceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------SRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--------~~~~f~~gvp 113 (329)
+..+|+|+|||+|.+++.+.+ + ..+|+..|+..++....-+.... ....|..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~--------~---------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~-- 204 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL--------E---------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN-- 204 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--
Confidence 357999999999999988874 1 14799999998887654433221 11223332
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+. +. .++++|+|+|+.++|++.+. +...+++..+ .+.+||+ ++++
T Consensus 205 -Dl-~~--l~~~fD~Vv~~~vL~H~p~~-----------------------------~~~~ll~~l~-~l~~g~l-iIs~ 249 (315)
T PLN02585 205 -DL-ES--LSGKYDTVTCLDVLIHYPQD-----------------------------KADGMIAHLA-SLAEKRL-IISF 249 (315)
T ss_pred -ch-hh--cCCCcCEEEEcCEEEecCHH-----------------------------HHHHHHHHHH-hhcCCEE-EEEe
Confidence 22 22 26889999999998764321 1224454444 4555554 5544
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+... .++.++ .+.++.. |.......|+.+.+|++++++..| |++.+.+...
T Consensus 250 -~p~~~----------~~~~l~-~~g~~~~-g~~~~~r~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 250 -APKTL----------YYDILK-RIGELFP-GPSKATRAYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred -CCcch----------HHHHHH-HHHhhcC-CCCcCceeeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 33221 122222 1222211 110001156779999999999985 9998877654
No 65
>PTZ00146 fibrillarin; Provisional
Probab=98.40 E-value=6.7e-06 Score=78.27 Aligned_cols=131 Identities=8% Similarity=-0.022 Sum_probs=73.5
Q ss_pred hHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 037735 10 YASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH 89 (329)
Q Consensus 10 Y~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL 89 (329)
|-.=.+.+.+.++.++-=|+ .+. ..+-.+|||+|||+|..|..+.+.+ .++-.||..|+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~----~l~---IkpG~~VLDLGaG~G~~t~~lAdiV--------------G~~G~VyAVD~ 165 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA----NIP---IKPGSKVLYLGAASGTTVSHVSDLV--------------GPEGVVYAVEF 165 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc----eec---cCCCCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEEC
Confidence 44445555555544432222 121 1233689999999999998887633 23347999998
Q ss_pred CcchHHhhhhcCCC-CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHH
Q 037735 90 SDNDFNTLFKSLPQ-SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQF 168 (329)
Q Consensus 90 p~ndfn~lf~~l~~-~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~ 168 (329)
..++...+.+.... ..-.++.+....-+.--++..++|+|++..+..|
T Consensus 166 s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd------------------------------- 214 (293)
T PTZ00146 166 SHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD------------------------------- 214 (293)
T ss_pred cHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc-------------------------------
Confidence 86533222221111 1123444331110001123458999999886322
Q ss_pred hhcHHHHHHHHHHHhccCceEEEEec
Q 037735 169 NNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 169 ~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+...++.+..+.|+|||.|++..-
T Consensus 215 --q~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 215 --QARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred --hHHHHHHHHHHhccCCCEEEEEEe
Confidence 112445567788999999999653
No 66
>PRK04266 fibrillarin; Provisional
Probab=98.37 E-value=3.6e-06 Score=77.48 Aligned_cols=108 Identities=8% Similarity=0.037 Sum_probs=66.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..|..+.+.+ +.-.|+.-|+...+...+.+......+ .++.|.........
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v---------------~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIV---------------EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhc---------------CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 34699999999999998876421 124799999988765544333221112 23343321110111
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++++|++++..+..| .-..+|+..++.|+|||.+++++..++
T Consensus 137 ~l~~~~D~i~~d~~~p~---------------------------------~~~~~L~~~~r~LKpGG~lvI~v~~~~ 180 (226)
T PRK04266 137 HVVEKVDVIYQDVAQPN---------------------------------QAEIAIDNAEFFLKDGGYLLLAIKARS 180 (226)
T ss_pred hccccCCEEEECCCChh---------------------------------HHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 12356999986543222 012458889999999999999877643
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.35 E-value=8.8e-07 Score=86.34 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=73.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~l 120 (329)
.-+|+|+|||+|..+..+.+ + .|..+|+..|.........-+++... ..-+. +++.+..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~--------~-------~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~---~~D~~~~- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLAR--------H-------SPKIRLTLSDVSAAALESSRATLAANGLEGEVF---ASNVFSD- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE---Ecccccc-
Confidence 34899999999999888764 2 35578999999876665544333211 11122 2344442
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++++|+|+|+..+||.-... ..+...|++.-++.|+|||.|++..
T Consensus 258 -~~~~fDlIvsNPPFH~g~~~~--------------------------~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 258 -IKGRFDMIISNPPFHDGIQTS--------------------------LDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred -cCCCccEEEECCCccCCcccc--------------------------HHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 367899999999999842211 1245689999999999999998875
No 68
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.32 E-value=2.4e-06 Score=79.51 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=94.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCCC-c--ce---eeecccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQS-R--SY---YAAGVPG 114 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~~-~--~~---f~~gvpg 114 (329)
.+|+|+|||+|-+|..|.. +. .+|...|+..-+-...-.. .|.. . .| |....
T Consensus 91 ~~ilDvGCGgGLLSepLAr---------lg--------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~-- 151 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR---------LG--------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTD-- 151 (282)
T ss_pred ceEEEeccCccccchhhHh---------hC--------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcc--
Confidence 6799999999999999973 21 5889999875443332111 1211 1 11 33221
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
- +-+-+. +|.|+++-.++-.. |...|+.+.++-|+|||.|++++.
T Consensus 152 -~-E~~~~~--fDaVvcsevleHV~-------------------------------dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 152 -V-EGLTGK--FDAVVCSEVLEHVK-------------------------------DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred -h-hhcccc--cceeeeHHHHHHHh-------------------------------CHHHHHHHHHHHhCCCCceEeeeh
Confidence 2 223332 99999999888754 445999999999999999999998
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
-|.-.... +.+ .+.+-+..+|-.|.-.-+ =|++++|+..+++.+ ++.++.+.
T Consensus 197 nrt~lS~~-----~~i--~~~E~vl~ivp~Gth~~e--kfi~p~e~~~~l~~~-~~~v~~v~ 248 (282)
T KOG1270|consen 197 NRTILSFA-----GTI--FLAEIVLRIVPKGTHTWE--KFINPEELTSILNAN-GAQVNDVV 248 (282)
T ss_pred hhhHHHhh-----ccc--cHHHHHHHhcCCCCcCHH--HcCCHHHHHHHHHhc-Ccchhhhh
Confidence 77632111 011 122222335555632222 247999999999988 47766554
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.31 E-value=1.8e-06 Score=85.18 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=72.2
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCC--cceeeeccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQS--RSYYAAGVPGSFY 117 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~--~~~f~~gvpgsFy 117 (329)
.+|+|+|||+|..++.+.+ + .|+.+|++.|.........-.++ +.. +--|.. ++.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~--------~-------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~---~D~l 291 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLD--------K-------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI---NNAL 291 (378)
T ss_pred CeEEEEeccccHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE---cccc
Confidence 5899999999999888764 2 46679999999865555543332 110 112332 3454
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+ ++.++|+|+|+--+|+...+.. . ...++|+.-.+.|+|||.|++..
T Consensus 292 ~~~-~~~~fDlIlsNPPfh~~~~~~~---------------~-----------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 292 SGV-EPFRFNAVLCNPPFHQQHALTD---------------N-----------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccC-CCCCEEEEEECcCcccCccCCH---------------H-----------HHHHHHHHHHHhcccCCEEEEEE
Confidence 443 5678999999999998543321 1 12367888899999999999985
No 70
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.31 E-value=3.1e-06 Score=75.20 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCCCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|..+.. . .|..+|+.-|...++...+-+. ..-.+--++.| +.. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--------~-------~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~---d~~-~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--------A-------RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG---RAE-D 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--------H-------CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec---chh-h
Confidence 57999999999999998853 1 2336899999987754433222 22112224444 453 3
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.+.+++|+|+|.. +++ + ..+++...+-|+|||.+++..
T Consensus 104 ~~~~~~fD~I~s~~-~~~---~-------------------------------~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 104 FQHEEQFDVITSRA-LAS---L-------------------------------NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ccccCCccEEEehh-hhC---H-------------------------------HHHHHHHHHhcCCCCEEEEEc
Confidence 44578999999865 332 2 255777788899999999763
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.29 E-value=2e-06 Score=77.14 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~ 119 (329)
+...+++|+|||.|.+|..|.. +| -.+...|+...-....-+.+..... -|..+ +. -+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~--------rC---------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~---dv-p~ 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAP--------RC---------DRLLAVDISPRALARARERLAGLPHVEWIQA---DV-PE 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGG--------GE---------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES----T-TT
T ss_pred cccceeEecCCCccHHHHHHHH--------hh---------CceEEEeCCHHHHHHHHHhcCCCCCeEEEEC---cC-CC
Confidence 4567899999999999999974 43 2678888876555554545543222 23332 12 23
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..|++++|+++-+-.+++|++.+ |+.+++..-.+-|.|||.|++...
T Consensus 101 ~~P~~~FDLIV~SEVlYYL~~~~----------------------------~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 101 FWPEGRFDLIVLSEVLYYLDDAE----------------------------DLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ---SS-EEEEEEES-GGGSSSHH----------------------------HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCeeEEEEehHhHcCCCHH----------------------------HHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35999999999999999997533 778899999999999999999886
No 72
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.29 E-value=4.6e-06 Score=79.42 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=95.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCCcceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~~~~f~~gvpgsFy 117 (329)
+-.+|||+||+.|..+..+.. + .| -.|+.-| |.-.|...|+-+ +....+|.. |-..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~--------~-------GA-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgv- 174 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLG--------R-------GA-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGV- 174 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhh--------c-------CC-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccch-
Confidence 346999999999999998874 1 23 3678888 545555555443 333344443 1123
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+.|-+.+++|+|+|.-.|=-+.++= ..|..-...|+|||.|++-++..+
T Consensus 175 E~Lp~~~~FDtVF~MGVLYHrr~Pl-------------------------------~~L~~Lk~~L~~gGeLvLETlvi~ 223 (315)
T PF08003_consen 175 EDLPNLGAFDTVFSMGVLYHRRSPL-------------------------------DHLKQLKDSLRPGGELVLETLVID 223 (315)
T ss_pred hhccccCCcCEEEEeeehhccCCHH-------------------------------HHHHHHHHhhCCCCEEEEEEeeec
Confidence 5665578999999988776655432 448888999999999999998755
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--ccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--MYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
..... .|+-++.-.+-. .+.||..-+..+++..| |+-+++-
T Consensus 224 g~~~~-----------------~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~v 266 (315)
T PF08003_consen 224 GDENT-----------------VLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRCV 266 (315)
T ss_pred CCCce-----------------EEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEEe
Confidence 43211 011111111111 55699999999999995 8765544
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.29 E-value=1.5e-05 Score=72.94 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=89.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc--CCC-------------Ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS--LPQ-------------SRS 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~--l~~-------------~~~ 106 (329)
+..+|+|+|||.|.|+..+.+ ...+|+..|+...-...+++. +.. .+-
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~-----------------~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE-----------------QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh-----------------CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 346999999999999999974 126899999987655554432 110 001
Q ss_pred eeeeccccccccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 107 YYAAGVPGSFYSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 107 ~f~~gvpgsFy~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
-+..| ++++... +...+|+++-..++|=+ |. .+..++++.-++-|+|
T Consensus 100 ~~~~~---D~~~l~~~~~~~fd~v~D~~~~~~l---~~--------------------------~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 100 TIYCG---DFFALTAADLADVDAVYDRAALIAL---PE--------------------------EMRERYVQQLAALLPA 147 (218)
T ss_pred EEEEC---cccCCCcccCCCeeEEEehHhHhhC---CH--------------------------HHHHHHHHHHHHHcCC
Confidence 12222 4443321 12467888888877743 31 2345779999999999
Q ss_pred CceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 186 GGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 186 GG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
||++++.++..+.... .|- .|.-+.+|+.+.+.. .|+|+.++..
T Consensus 148 gG~~~l~~~~~~~~~~----------------------~gP-----p~~~~~~el~~~~~~--~~~i~~~~~~ 191 (218)
T PRK13255 148 GCRGLLVTLDYPQEEL----------------------AGP-----PFSVSDEEVEALYAG--CFEIELLERQ 191 (218)
T ss_pred CCeEEEEEEEeCCccC----------------------CCC-----CCCCCHHHHHHHhcC--CceEEEeeec
Confidence 9986666655432110 121 355789999999863 3999988864
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.26 E-value=4e-06 Score=73.41 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=71.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
...+|+|+|||+|..++.+.. + .|...|++.|...+.....-+++.. ...+ ..+..+.++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~--------~-------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v--~~~~~d~~~~ 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAK--------R-------GPDAKVTAVDINPDALELAKRNAERNGLENV--EVVQSDLFEA 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHH--------T-------STCEEEEEEESBHHHHHHHHHHHHHTTCTTE--EEEESSTTTT
T ss_pred cCCeEEEecCChHHHHHHHHH--------h-------CCCCEEEEEcCCHHHHHHHHHHHHhcCcccc--cccccccccc
Confidence 457899999999999998875 2 4556799999987666665444421 1212 2223466655
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+. ++++|+|+|+-=+|+-.+.. ..-+..|++.-.+-|+|||.|++..
T Consensus 94 ~~-~~~fD~Iv~NPP~~~~~~~~--------------------------~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 94 LP-DGKFDLIVSNPPFHAGGDDG--------------------------LDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CC-TTCEEEEEE---SBTTSHCH--------------------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-ccceeEEEEccchhcccccc--------------------------hhhHHHHHHHHHHhccCCCEEEEEe
Confidence 44 78999999986655532100 1124588999999999999998865
No 75
>PHA03411 putative methyltransferase; Provisional
Probab=98.25 E-value=8e-06 Score=77.13 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=76.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|..++.+.. + .+..+|+..|+........-+.++. .-+.. +++.+ +.+
T Consensus 65 ~grVLDLGcGsGilsl~la~--------r-------~~~~~V~gVDisp~al~~Ar~n~~~--v~~v~---~D~~e-~~~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLH--------R-------CKPEKIVCVELNPEFARIGKRLLPE--AEWIT---SDVFE-FES 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHhCcC--CEEEE---Cchhh-hcc
Confidence 36899999999988887754 2 1225899999987666555444432 22344 35643 334
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH--HHHhh--cHHHHHHHHHHHhccCceEEEEecccC
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA--AQFNN--DFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~--~q~~~--D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++|+|+|+-.++++......+| -+|. +...+ .+..|++..+.-|+|+|...+..-|++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~---------------~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDV---------------FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhh---------------hhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 578999999999999643221111 0110 00001 257899999999999998888865544
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.24 E-value=5.4e-06 Score=74.82 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=52.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Cc-ceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SR-SYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~-~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|..+.+.+ .+.-+|+..|...+.....-+++.. .. -.+.. +++.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~--------------~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~---~d~~ 134 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAI--------------ERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH---GDGK 134 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---CCcc
Confidence 34789999999999998876522 1224799999987665544333321 11 12343 3554
Q ss_pred cccCCCCceeEEEeccceecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWL 138 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWL 138 (329)
+-+.+.+++|.+++..+++++
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred cCCccCCCccEEEEccCcchh
Confidence 444456799999999988763
No 77
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.22 E-value=3.2e-06 Score=75.66 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=66.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..++.+.. . .|..+|+.-|....+....-+.+ ....--|..+ +..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~--------~-------~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~---d~~~ 106 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAI--------A-------RPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG---RAEE 106 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHH--------H-------CCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec---cHhh
Confidence 368999999999999988864 1 23468999999876554432222 1111223333 3433
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-+.+++|+++|... . ++..|++..++-|+|||.+++..
T Consensus 107 -~~~~~~fDlV~~~~~----~-------------------------------~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 107 -FGQEEKFDVVTSRAV----A-------------------------------SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -CCCCCCccEEEEccc----c-------------------------------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 323678999998631 1 33478999999999999999875
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.22 E-value=4.5e-06 Score=75.71 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=63.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.+|..+.... .++.+|+..|.........-+.+. -....++.| +..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~---d~~~ 139 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG---DGTQ 139 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC---Cccc
Confidence 45799999999999998776522 223579999987665544333321 112234544 4544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
-+.+.+.+|++++..+.+. +| ..-.+.|+|||+|++.+
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~---~~----------------------------------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK---IP----------------------------------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc---cc----------------------------------HHHHHhcCcCcEEEEEE
Confidence 4444578999998765433 22 22346799999999876
No 79
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.21 E-value=1.9e-05 Score=71.55 Aligned_cols=147 Identities=17% Similarity=0.274 Sum_probs=85.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.+ . . .+++..|+..++....-+.... .+.-|..+ ++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~--------~-------~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~- 121 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLAR--------R-------G--AKVVASDISPQMVEEARERAPEAGLAGNITFEVG---DL- 121 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHH--------c-------C--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---Cc-
Confidence 357899999999999888763 1 1 3599999987775554333221 12234443 22
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+ .+++++|+++++.++|++++ .++...++..++-+ +||. ++++....
T Consensus 122 ~--~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~l~~~~-~~~~-~i~~~~~~ 168 (230)
T PRK07580 122 E--SLLGRFDTVVCLDVLIHYPQ-----------------------------EDAARMLAHLASLT-RGSL-IFTFAPYT 168 (230)
T ss_pred h--hccCCcCEEEEcchhhcCCH-----------------------------HHHHHHHHHHHhhc-CCeE-EEEECCcc
Confidence 2 34688999999999966432 13344555555533 3433 34432221
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcC---CCc-ccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILS---KEK-MYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~---~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
. .+..+. ++. +.+. ... .++.+.+++.+.++..| |++.+.+....
T Consensus 169 ~-----------~~~~~~-----~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 217 (230)
T PRK07580 169 P-----------LLALLH-----WIG-GLFPGPSRTTRIYPHREKGIRRALAAAG-FKVVRTERISS 217 (230)
T ss_pred H-----------HHHHHH-----Hhc-cccCCccCCCCccccCHHHHHHHHHHCC-CceEeeeeccc
Confidence 1 111111 111 1111 111 56679999999999884 99988876643
No 80
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.21 E-value=2.1e-06 Score=79.14 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=90.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-CCcc-eeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-QSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~~~~-~f~~gvpgsFy~~ 119 (329)
.-.+|+|+|||-|.+|..+.. -...|+..|+....-...-..-. ..-. =|..+ .-.+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr-----------------~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~---~~edl 118 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLAR-----------------LGASVTGIDASEKPIEVAKLHALESGVNIDYRQA---TVEDL 118 (243)
T ss_pred CCCeEEEecCCccHhhHHHHH-----------------CCCeeEEecCChHHHHHHHHhhhhccccccchhh---hHHHH
Confidence 347899999999988888763 12689999998655433221111 1001 02211 22233
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
....+++|+|+|.=.|+-+.++ ..|++.+++-++|||.|++++.-|.--
T Consensus 119 ~~~~~~FDvV~cmEVlEHv~dp-------------------------------~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 119 ASAGGQFDVVTCMEVLEHVPDP-------------------------------ESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred HhcCCCccEEEEhhHHHccCCH-------------------------------HHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 3455899999988777764432 479999999999999999999886531
Q ss_pred CcccCCcccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
. .+.. ..+-.++ ++-.|. +.--=+-.++|+...+... .+++....-
T Consensus 168 a--------~~~~i~~ae~vl~-~vP~gT--H~~~k~irp~El~~~~~~~-~~~~~~~~g 215 (243)
T COG2227 168 A--------YLLAIIGAEYVLR-IVPKGT--HDYRKFIKPAELIRWLLGA-NLKIIDRKG 215 (243)
T ss_pred H--------HHHHHHHHHHHHH-hcCCcc--hhHHHhcCHHHHHHhcccC-CceEEeecc
Confidence 1 0110 1111222 222231 1101123678888887765 377666553
No 81
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.20 E-value=5.3e-06 Score=73.44 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+ + .|..+++..|........+-++... ..--+..+ +. .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~--------~-------~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~---d~-~ 91 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL--------Q-------FPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG---EA-P 91 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec---Cc-h
Confidence 456899999999999998874 2 2346899999976655554333211 11122322 33 1
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+ ++++|++++..+.+ .+..++....+.|+|||++++...+
T Consensus 92 ~~~-~~~~D~v~~~~~~~----------------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 92 IEL-PGKADAIFIGGSGG----------------------------------NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred hhc-CcCCCEEEECCCcc----------------------------------CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 222 35789998865432 1236688889999999999986643
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.20 E-value=4.2e-06 Score=82.61 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=77.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~~ 119 (329)
.-.++|+|||+|..+..+.. + .|+..++.-|+.......+-+.... ..+ .++.|....+ -.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~--------~-------~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l-l~ 186 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAK--------N-------NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL-LE 186 (390)
T ss_pred CCeEEEEcCcccHHHHHHHH--------h-------CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh-hh
Confidence 34799999999999988875 2 4678999999988777776554321 123 3444432222 24
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+|++++|.++.++...|..+.. .++ -...||...++.|+|||.+.+.+
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrH------RRl-------------------v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPH------RRV-------------------ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred hCCCCceeEEEEeCCCCccccch------hhc-------------------cHHHHHHHHHHHcCCCcEEEEEE
Confidence 58999999999988777732210 011 12488999999999999999988
No 83
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.19 E-value=4.4e-06 Score=63.67 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=66.8
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh---cCCCCcceeeecccccccccc-
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK---SLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~---~l~~~~~~f~~gvpgsFy~~l- 120 (329)
+|+|+|||+|.++..+.. .+..+++..|+..+.....-+ ........+..+ ++....
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKG---DAEELPP 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc---Chhhhcc
Confidence 589999999998877753 122578999987655444331 111112233333 343333
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
.+.+++|+++++..+++.+ .+...+++...+-|+|||.++++
T Consensus 62 ~~~~~~d~i~~~~~~~~~~------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 EADESFDVIISDPPLHHLV------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccCCceEEEEEccceeehh------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3667899999999999851 13457788889999999999986
No 84
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.16 E-value=7.4e-06 Score=74.42 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=51.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||||..|..+...+ .+..+|+.-|.-.+.....-+.+. ..+..++.| ++..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~--------------~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g---d~~~ 138 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV--------------GKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG---DGTL 138 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC---Cccc
Confidence 45799999999999998776422 223478888887655544333332 112234444 5545
Q ss_pred ccCCCCceeEEEeccceec
Q 037735 119 SLFPKSSLHFVHSSYTLHW 137 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhW 137 (329)
-+.+.+.+|+|++..+++.
T Consensus 139 ~~~~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPD 157 (212)
T ss_pred CCCcCCCcCEEEECCCccc
Confidence 5566788999999877543
No 85
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.15 E-value=7.4e-06 Score=72.65 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=66.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccc---
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS--- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~--- 118 (329)
+..+|+|+|||+|..|..+.... .+..+++..|+.... ..+. ..++.+ ++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~--------------~~~~~v~~vDis~~~------~~~~--i~~~~~---d~~~~~~ 86 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV--------------GGKGRVIAVDLQPMK------PIEN--VDFIRG---DFTDEEV 86 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh--------------CCCceEEEEeccccc------cCCC--ceEEEe---eCCChhH
Confidence 45689999999999888887522 122468888886532 1111 123333 3322
Q ss_pred -----ccCCCCceeEEEecccee----cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 119 -----SLFPKSSLHFVHSSYTLH----WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 119 -----~lfp~~s~dl~~Ss~alh----WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
..+|.+++|+++|..+.| |.-+.+ ....+...+|....+.|+|||++
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~------------------------~~~~~~~~~l~~~~~~LkpgG~l 142 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHL------------------------RSIDLVELALDIAKEVLKPKGNF 142 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHH------------------------HHHHHHHHHHHHHHHHccCCCEE
Confidence 136778999999976532 321111 01134568899999999999999
Q ss_pred EEEecc
Q 037735 190 ALVMFS 195 (329)
Q Consensus 190 ~~~~~g 195 (329)
++..+.
T Consensus 143 vi~~~~ 148 (188)
T TIGR00438 143 VVKVFQ 148 (188)
T ss_pred EEEEcc
Confidence 997643
No 86
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.12 E-value=1e-05 Score=72.98 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..|..+.. . . .+++.-|...+....+-+.+.. ...-+.. +++.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~-~--------------~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~ 136 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAH-L--------------V--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRH---GDGW 136 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHH-H--------------h--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEE---CCcc
Confidence 3457999999999999985543 1 0 1577788776555444333321 1112333 3454
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+-+.+.+++|++++..+++++ | ..-.+.|+|||+|++...
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~---~----------------------------------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 137 KGWPAYAPFDRILVTAAAPEI---P----------------------------------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCCCcCEEEEccCchhh---h----------------------------------HHHHHhcCCCcEEEEEEc
Confidence 444445889999998876653 3 122467999999999875
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.12 E-value=7.9e-06 Score=74.93 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=74.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.. . .|..+++..|.........-+.+. ..+--+.. +++.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~--------~-------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---~d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAK--------E-------RPDARVTAVDISPEALAVARKNAARLGLDNVTFLQ---SDWFE 148 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE---Cchhc
Confidence 346899999999999888874 2 234689999998776665433321 11122333 35644
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-----CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-----DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-----~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++++++|+|+|+--.+..++.... .+........ ....-.++..|++...+.|+|||.+++..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~----------~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG----------GEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC----------CCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5678999999997544432221100 0000000000 01112356789999999999999998854
No 88
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=1.4e-05 Score=72.16 Aligned_cols=153 Identities=18% Similarity=0.116 Sum_probs=94.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsFy~ 118 (329)
-.-+|++|||||+|=-..- -.|--.|++-|=..|+=.-+-++.. ..-.+|+.|.+ +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~----------------~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g----e 136 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP----------------WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG----E 136 (252)
T ss_pred ccceEEecccCCCCccccc----------------CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech----h
Confidence 4567999999999954331 1355689999976666444444332 21245777643 3
Q ss_pred cc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++ +|++|+|.|+....|- |.- |-.+-|+.-.+-|+|||+++|.=-|+
T Consensus 137 ~l~~l~d~s~DtVV~TlvLC--Sve-----------------------------~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLC--SVE-----------------------------DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred cCcccccCCeeeEEEEEEEe--ccC-----------------------------CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 44 3999999999987774 321 22356999999999999999998887
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
..... ...+++...+-+-.+...| ..-+.+ .-+.|+++ .|++...+.++.
T Consensus 186 ~~y~~-----~n~i~q~v~ep~~~~~~dG-------C~ltrd-~~e~Leda-~f~~~~~kr~~~ 235 (252)
T KOG4300|consen 186 GEYGF-----WNRILQQVAEPLWHLESDG-------CVLTRD-TGELLEDA-EFSIDSCKRFNF 235 (252)
T ss_pred ccchH-----HHHHHHHHhchhhheeccc-------eEEehh-HHHHhhhc-ccccchhhcccC
Confidence 75321 1112322222222344555 122333 34456665 598888776544
No 89
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.08 E-value=8.7e-06 Score=73.76 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++..+|||+|||.+..+..+- ....|.-=||...+ ..+-+ .+.-.-.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~------------------~~~~V~SfDLva~n-----------~~Vta----cdia~vP 117 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP------------------NKHKVHSFDLVAPN-----------PRVTA----CDIANVP 117 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SS-----------TTEEE----S-TTS-S
T ss_pred CCCEEEEECCCchHHHHHhcc------------------cCceEEEeeccCCC-----------CCEEE----ecCccCc
Confidence 556899999999998774331 11467777886422 11111 1443455
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++|+|+++.+.+|.= .||..|+.+-.|.|+|||.|.+.=.-
T Consensus 118 L~~~svDv~VfcLSLMG--------------------------------Tn~~~fi~EA~RvLK~~G~L~IAEV~----- 160 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMG--------------------------------TNWPDFIREANRVLKPGGILKIAEVK----- 160 (219)
T ss_dssp --TT-EEEEEEES---S--------------------------------S-HHHHHHHHHHHEEEEEEEEEEEEG-----
T ss_pred CCCCceeEEEEEhhhhC--------------------------------CCcHHHHHHHHheeccCcEEEEEEec-----
Confidence 89999999999988753 37789999999999999999987432
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
-.+.+.+++...++.- ||++...+..
T Consensus 161 -------------------------------SRf~~~~~F~~~~~~~-GF~~~~~d~~ 186 (219)
T PF05148_consen 161 -------------------------------SRFENVKQFIKALKKL-GFKLKSKDES 186 (219)
T ss_dssp -------------------------------GG-S-HHHHHHHHHCT-TEEEEEEE--
T ss_pred -------------------------------ccCcCHHHHHHHHHHC-CCeEEecccC
Confidence 2245678888889888 5999876643
No 90
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.08 E-value=3.2e-05 Score=71.13 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=74.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|+|+|..+..++. + .|.++++.-|||.. ....-+ ..+--| +||+|+ .-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~v-~~~~~~---~~rv~~---~~gd~f-~~ 155 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALAR--------A-------YPNLRATVFDLPEV-IEQAKE---ADRVEF---VPGDFF-DP 155 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEE-HHH-HCCHHH---TTTEEE---EES-TT-TC
T ss_pred cCccEEEeccCcchHHHHHHHH--------H-------CCCCcceeeccHhh-hhcccc---cccccc---ccccHH-hh
Confidence 3456899999999999988875 3 57789999999952 122222 112222 567999 77
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC--ceEEEEecccCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG--GLAALVMFSVPD 198 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG--G~l~~~~~g~~~ 198 (329)
+|. .|+++-+..||=.++ +|-..+|+..++.|+|| |++++.=.-.++
T Consensus 156 ~P~--~D~~~l~~vLh~~~d-----------------------------~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 156 LPV--ADVYLLRHVLHDWSD-----------------------------EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp CSS--ESEEEEESSGGGS-H-----------------------------HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hcc--ccceeeehhhhhcch-----------------------------HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 787 999999999983232 24458899999999999 999998776554
Q ss_pred C
Q 037735 199 G 199 (329)
Q Consensus 199 ~ 199 (329)
.
T Consensus 205 ~ 205 (241)
T PF00891_consen 205 D 205 (241)
T ss_dssp S
T ss_pred C
Confidence 3
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.05 E-value=4e-05 Score=71.26 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.. . .+ ..|+.-|.........-+++.... +.... -+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~--------~-------g~-~~v~giDis~~~l~~A~~n~~~~~------~~~~~---~~ 173 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAK--------L-------GA-KKVLAVDIDPQAVEAARENAELNG------VELNV---YL 173 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHH--------c-------CC-CeEEEEECCHHHHHHHHHHHHHcC------CCceE---EE
Confidence 457899999999987765532 1 12 258999998766655444332100 00000 01
Q ss_pred CCC--ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 122 PKS--SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 122 p~~--s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+.+ ++|+++++...+. +..++..-.+.|+|||.++++.+
T Consensus 174 ~~~~~~fD~Vvani~~~~----------------------------------~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 174 PQGDLKADVIVANILANP----------------------------------LLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ccCCCCcCEEEEcCcHHH----------------------------------HHHHHHHHHHhcCCCcEEEEEEC
Confidence 112 7899998743222 23568888899999999999754
No 92
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.02 E-value=1.9e-05 Score=73.44 Aligned_cols=124 Identities=16% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
+...+|+|+|||+|..++.+.+ ++ ++.++...++-..+.....+++.- .+-.++.++=..|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~--------r~-------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQ--------RT-------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhc--------cC-------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHh
Confidence 4478999999999999999976 31 236788888877776666666532 1223344322222
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
....+.+++|+|+|+ +| +++-... .++.+..+..+-+..-++..+++..++-|+|||.+.+..
T Consensus 108 -~~~~~~~~fD~Ii~N--------PP---yf~~~~~--~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 108 -LKALVFASFDLIICN--------PP---YFKQGSR--LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred -hhcccccccCEEEeC--------CC---CCCCccc--cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 333455689999986 44 1111111 234456666677778899999999999999999999887
No 93
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.01 E-value=1.3e-05 Score=69.66 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=66.1
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+...-.++++++|++++++++||+.+ ...+|++.++.|+|||.|++.-+
T Consensus 34 d~~~lp~~~~~fD~v~~~~~l~~~~d-------------------------------~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 34 DAIDLPFDDCEFDAVTMGYGLRNVVD-------------------------------RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred chhhCCCCCCCeeEEEecchhhcCCC-------------------------------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 56444578999999999999999753 34789999999999999999988
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
++++.... ..++.... . .-+.--|.+.... ..+++++|+.+.+++.| |+..+..
T Consensus 83 ~~~~~~~~-----~~~~~~~~-~-~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~~ 146 (160)
T PLN02232 83 NKSNQSVT-----TFMQGWMI-D-NVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAG-FSSACHY 146 (160)
T ss_pred CCCChHHH-----HHHHHHHc-c-chHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceEE
Confidence 86542110 00000000 0 0000001111111 35689999999999885 8866544
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.96 E-value=2.3e-05 Score=74.51 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC---cce-eeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS---RSY-YAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~---~~~-f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..++.+.. . .+ .+|+..|+........-+++... ..+ +..+ + .
T Consensus 160 g~~VLDvGcGsG~lai~aa~--------~-------g~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~---~--~ 218 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALK--------L-------GA-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI---Y--L 218 (288)
T ss_pred CCEEEEeCCChhHHHHHHHH--------c-------CC-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec---c--c
Confidence 47899999999998876542 1 11 37999999876655543332110 011 1111 1 1
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++++++|+++++...+++ ..++....+-|+|||.++++.+...
T Consensus 219 ~~~~~~~fDlVvan~~~~~l----------------------------------~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 219 EQPIEGKADVIVANILAEVI----------------------------------KELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred ccccCCCceEEEEecCHHHH----------------------------------HHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 12456789999997644332 3568888999999999999876543
No 95
>PLN03075 nicotianamine synthase; Provisional
Probab=97.95 E-value=5e-05 Score=72.55 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-----Ccceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-----SRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-----~~~~f~~gvpgsF 116 (329)
.+.+|||+|||.|+.|..++..- . .|..+++.-|......+..-+.+.. .+--|..+. .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~------~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~D---a 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH------H-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTAD---V 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh------c-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECc---h
Confidence 67899999999999887765311 1 3556788889876443332222211 123466553 2
Q ss_pred ccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+ +. +.+.+|+|++. ++|-.++.+. .+.|+.-++-|+|||.+++.+
T Consensus 187 ~~-~~~~l~~FDlVF~~-ALi~~dk~~k-----------------------------~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 187 MD-VTESLKEYDVVFLA-ALVGMDKEEK-----------------------------VKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hh-cccccCCcCEEEEe-cccccccccH-----------------------------HHHHHHHHHhcCCCcEEEEec
Confidence 22 22 24789999999 7665543321 377999999999999999988
No 96
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.95 E-value=1.8e-05 Score=79.59 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=64.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh--hcCCCCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF--KSLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf--~~l~~~~~~f~~gvpgsFy~ 118 (329)
....++||+|||+|.++..+++.= -..+.+-.+|--. .+.++. +.+|. ..|+.|+ .
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--------------V~t~s~a~~d~~~-~qvqfaleRGvpa-----~~~~~~s--~ 173 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--------------VTTMSFAPNDEHE-AQVQFALERGVPA-----MIGVLGS--Q 173 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--------------ceEEEcccccCCc-hhhhhhhhcCcch-----hhhhhcc--c
Confidence 455667999999999999987511 1112222333221 112211 22332 1222233 4
Q ss_pred cc-CCCCceeEEEecccee-cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SL-FPKSSLHFVHSSYTLH-WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alh-WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
|| ||++++|++||+-|+- |.++-- .+|-.--|.|+|||+++++.+-.
T Consensus 174 rLPfp~~~fDmvHcsrc~i~W~~~~g-------------------------------~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 174 RLPFPSNAFDMVHCSRCLIPWHPNDG-------------------------------FLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccCCccchhhhhcccccccchhccc-------------------------------ceeehhhhhhccCceEEecCCcc
Confidence 55 9999999999999875 755321 45778889999999999988653
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
.
T Consensus 223 ~ 223 (506)
T PF03141_consen 223 Y 223 (506)
T ss_pred c
Confidence 3
No 97
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.90 E-value=2.2e-05 Score=72.00 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=90.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh-cCCCCcceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK-SLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~-~l~~~~~~f~~gvpgsFy~~l 120 (329)
...+++|+|||||-....+-.-. -.+.--|+..||...... .+.. ..+. +.--.| ...
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a-----------------~~ltGvDiS~nMl~kA~eKg~YD--~L~~-Aea~~F-l~~ 183 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA-----------------DRLTGVDISENMLAKAHEKGLYD--TLYV-AEAVLF-LED 183 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH-----------------hhccCCchhHHHHHHHHhccchH--HHHH-HHHHHH-hhh
Confidence 36789999999999888775422 246678999999765321 1111 0011 100013 222
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
.-+..+|+|.+.-.|-+|-.+ ..++..-+.-|+|||.+.||.=--++..
T Consensus 184 ~~~er~DLi~AaDVl~YlG~L-------------------------------e~~~~~aa~~L~~gGlfaFSvE~l~~~~ 232 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGAL-------------------------------EGLFAGAAGLLAPGGLFAFSVETLPDDG 232 (287)
T ss_pred ccCCcccchhhhhHHHhhcch-------------------------------hhHHHHHHHhcCCCceEEEEecccCCCC
Confidence 334668888888887776544 4779999999999999999985322211
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
. | .+.-+ .-|..+..=|++.++.. +|+++.++....
T Consensus 233 ~---------f-~l~ps-------------~RyAH~~~YVr~~l~~~-Gl~~i~~~~tti 268 (287)
T COG4976 233 G---------F-VLGPS-------------QRYAHSESYVRALLAAS-GLEVIAIEDTTI 268 (287)
T ss_pred C---------e-ecchh-------------hhhccchHHHHHHHHhc-CceEEEeecccc
Confidence 0 0 00001 14556777788888888 599999886543
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=97.89 E-value=4e-05 Score=69.89 Aligned_cols=123 Identities=13% Similarity=-0.032 Sum_probs=71.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||+|.++..+.. . +..+++..|+........-+++. .....+.. +++.. .
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~---~d~~~-~ 96 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR---GDWAR-A 96 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE---Cchhh-h
Confidence 36899999999999887753 1 11378999998766554333221 11112333 45644 4
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
++++++|+|+++--.+..+.....+......+..+.. -..++..|+..-.+-|+|||++++....
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD----------GRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc----------HHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 6788999999985443322211000000000110000 1124568899999999999999976543
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.88 E-value=7.8e-05 Score=74.67 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=79.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|.-|..+...+ +..+|+.+|...+....+-+++.... ..-+..+.++...-.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34789999999999999887522 13589999998888777655543211 111111123332222
Q ss_pred --CCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 --FPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 --fp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+.+++|.|++ ++...-+.+.|+..|. .++..+.+.- +.-..+|..-++-|+|||.|+.++..
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~-------~~~~~~~~l~-----~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWL-------RKPRDIAELA-----ELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhc-------CCHHHHHHHH-----HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 25778999985 3444444455543222 1223332222 23358899999999999999999976
Q ss_pred cC
Q 037735 196 VP 197 (329)
Q Consensus 196 ~~ 197 (329)
-.
T Consensus 371 ~~ 372 (426)
T TIGR00563 371 VL 372 (426)
T ss_pred CC
Confidence 53
No 100
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.88 E-value=6.7e-05 Score=75.60 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=76.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|..+...+ ....+|+..|+.......+-+++.. ..-.+..+ +. ..
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~--------------~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~---Da-~~ 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM--------------QNRGQITAVDRYPQKLEKIRSHASALGITIIETIEG---DA-RS 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeC---cc-cc
Confidence 4689999999999998887522 1224899999998887766544421 11234444 33 23
Q ss_pred cCCCCceeEEEe----ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHS----SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~S----s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.|++++|.|+. +.+-+|-. -|...| ..++..+ +. ..+.-..+|..-++-|+|||+|+.+++.
T Consensus 313 ~~~~~~fD~Vl~D~Pcsg~g~~~r-~p~~~~-------~~~~~~~-~~----l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 313 FSPEEQPDAILLDAPCTGTGVLGR-RAELRW-------KLTPEKL-AE----LVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cccCCCCCEEEEcCCCCCcchhhc-Ccchhh-------cCCHHHH-HH----HHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 347788999973 22222221 221101 1112222 21 2234457999999999999999999976
Q ss_pred cC
Q 037735 196 VP 197 (329)
Q Consensus 196 ~~ 197 (329)
..
T Consensus 380 ~~ 381 (445)
T PRK14904 380 IE 381 (445)
T ss_pred CC
Confidence 54
No 101
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.87 E-value=5e-05 Score=76.27 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=78.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~-~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.-|..+.... .+..+|+.+|+..+....+-+++... .+ .+..+....+ .
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~ 301 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-T 301 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-h
Confidence 34689999999999999987522 23358999999988777665444221 12 2444432221 1
Q ss_pred ccCCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
. +.++++|.|+. ++.+..+.+-|...|. .+++.. ....+.-...|..-++-|+|||.|+.++..
T Consensus 302 ~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~--------~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 302 E-YVQDTFDRILVDAPCTSLGTARNHPEVLRR--------VNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred h-hhhccCCEEEECCCCCCCccccCChHHHHh--------CCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 23577999985 3444444444422111 111111 223334468899999999999999999987
Q ss_pred cC
Q 037735 196 VP 197 (329)
Q Consensus 196 ~~ 197 (329)
..
T Consensus 369 ~~ 370 (431)
T PRK14903 369 VT 370 (431)
T ss_pred CC
Confidence 44
No 102
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.86 E-value=5.1e-05 Score=68.66 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=96.0
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCC-cceee--ecccccc
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQS-RSYYA--AGVPGSF 116 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~-~~~f~--~gvpgsF 116 (329)
+|||+|||||--...+... .|.+++-=+|...+-+.++-.- +++- .+..+ +..+-+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~---------------lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA---------------LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred eEEEEcCCccHHHHHHHHH---------------CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 7999999999988888652 4668888899988777665322 1111 11111 1000011
Q ss_pred c-cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 Y-SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y-~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
- .-.++.+++|.++|.+.+|-.+-- .-..+|+.-++.|+|||.|++--+=
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~-----------------------------~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWS-----------------------------AVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHH-----------------------------HHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 0 011257799999999999984421 1237799999999999998876653
Q ss_pred cCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 196 VPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
..++...++ ++. .+-..|++-- - .+-+++.+++.++-...| ++.+....+
T Consensus 144 ~~~G~~ts~-SN~----~FD~sLr~rd-p------~~GiRD~e~v~~lA~~~G-L~l~~~~~M 193 (204)
T PF06080_consen 144 NRDGKFTSE-SNA----AFDASLRSRD-P------EWGIRDIEDVEALAAAHG-LELEEDIDM 193 (204)
T ss_pred ccCCEeCCc-HHH----HHHHHHhcCC-C------CcCccCHHHHHHHHHHCC-CccCccccc
Confidence 334433222 121 2233333221 0 155699999999888774 777655544
No 103
>PRK14968 putative methyltransferase; Provisional
Probab=97.85 E-value=0.00016 Score=63.15 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCc-ceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSR-SYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~-~~f~~gvpgsFy 117 (329)
..+|+|+|||+|..+..+.. + ..+++..|...+.....-+++. ..+ ..+.. +++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~--------~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~---~d~~ 83 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAK--------N---------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR---SDLF 83 (188)
T ss_pred CCEEEEEccccCHHHHHHHh--------h---------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe---cccc
Confidence 45899999999998887764 1 1478999988766655433321 111 22332 4565
Q ss_pred cccCCCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+. ++++++|+++++..+.+-...+.. +|-.-........ ...+..|++...+.|+|||.+++..
T Consensus 84 ~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 84 EP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDG-----------REVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcCh-----------HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 54 456689999987655431111000 0000000000000 1235688999999999999998876
No 104
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.83 E-value=5.2e-05 Score=70.62 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=62.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++.++|+|+|||.+..+.. .+ -.|+--||..-+ ..+-+ .+.-+-.
T Consensus 179 ~~~~vIaD~GCGEakiA~~-------------------~~-~kV~SfDL~a~~-----------~~V~~----cDm~~vP 223 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-------------------ER-HKVHSFDLVAVN-----------ERVIA----CDMRNVP 223 (325)
T ss_pred cCceEEEecccchhhhhhc-------------------cc-cceeeeeeecCC-----------Cceee----ccccCCc
Confidence 6789999999999886651 11 256666775311 12322 2554555
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++++|+|+++.+.+|.= .||..|+.+..|.|+|||.|.+.=
T Consensus 224 l~d~svDvaV~CLSLMg--------------------------------tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMG--------------------------------TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CccCcccEEEeeHhhhc--------------------------------ccHHHHHHHHHHHhccCceEEEEe
Confidence 89999999998877653 378899999999999999999875
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.78 E-value=0.00016 Score=72.44 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=74.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..|..+.+.. +...|+..|+.......+-+++... ...+..+..... ..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~-~~ 307 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP-AQ 307 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc-hh
Confidence 34689999999999998887522 1247999999887766664444221 123444432211 12
Q ss_pred cCCCCceeEEEec---cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSS---YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss---~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.++++++|.|++. +...-+.+-|...|. .. ++-.+ .+......+|..-++.|+|||.|++++..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~-------~~-~~~l~----~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWL-------RR-PEDIA----ALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCcccccc-------CC-HHHHH----HHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2456789999842 122111222322111 11 12111 22234468899999999999999999864
No 106
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.77 E-value=9.1e-05 Score=66.32 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C-CCcceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P-QSRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~-~~~~~f~~gvpgsFy 117 (329)
...+|+|+|||+|..+..+.... .+..+|+..|........+-+++ . ...-.++.+ ++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~--------------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~---d~~ 102 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV--------------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG---EAP 102 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe---chh
Confidence 45789999999999998876422 23458999999766655432222 1 112233443 443
Q ss_pred cccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+-+. .++++|.+++.... .++..+|+...+.|+|||++++...
T Consensus 103 ~~l~~~~~~~D~V~~~~~~----------------------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGS----------------------------------EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred hhHhhcCCCCCEEEECCCc----------------------------------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 3221 23578998875311 1334779999999999999997553
No 107
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.76 E-value=0.00014 Score=73.15 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=73.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|..+.+.. .+..+|+..|+..+....+-+++.. ..-.++.+ ++..-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~---D~~~~ 313 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKAL---DARKV 313 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC---Ccccc
Confidence 4689999999999999887522 2335899999987766655444321 11223444 34221
Q ss_pred --cCCCCceeEEEec---cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 --LFPKSSLHFVHSS---YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 --lfp~~s~dl~~Ss---~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++ +++|+|++. +....+.+-|...|.+ ++..+.+ ..+--..+|..-.+-|+|||.|+.++.
T Consensus 314 ~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~-------~~~~~~~-----l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 314 HEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNK-------TKEDIES-----LQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cchhc-ccCCEEEEcCCCCCCeeeccCcchhhcC-------CHHHHHH-----HHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 133 789999864 2333333333221211 1112211 112224689999999999999998875
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 381 s 381 (444)
T PRK14902 381 T 381 (444)
T ss_pred C
Confidence 4
No 108
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.74 E-value=6.2e-05 Score=60.77 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=67.1
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..++.+.. . . ..+++..|+-..-.......++. .+.-+..+ ++..-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~--------~-------~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~---D~~~~ 62 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALR--------R-------G-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVG---DARDL 62 (117)
T ss_dssp EEEEEETSTTCHHHHHHHH--------H-------C-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEES---HHHHH
T ss_pred CEEEEcCcchHHHHHHHHH--------H-------C-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEEC---chhhc
Confidence 5899999999998888875 2 1 25899999854222222222221 12334554 34333
Q ss_pred --cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 --LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 --lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++++++|+|+++-=.......+ ..-.++...|++...+-|+|||.+++.+.
T Consensus 63 ~~~~~~~~~D~Iv~npP~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 63 PEPLPDGKFDLIVTNPPYGPRSGDK-----------------------AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHTCTTT-EEEEEE--STTSBTT---------------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhccCceeEEEEECCCCccccccc-----------------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 37889999999975443221111 01122567999999999999999999874
No 109
>PRK00811 spermidine synthase; Provisional
Probab=97.68 E-value=0.00014 Score=69.11 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--------CCcceeeecc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------QSRSYYAAGV 112 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--------~~~~~f~~gv 112 (329)
+++.+|||+|||+|..+..+++ + .+.-+|...|+-.+.....-+.++ ..+--++.+.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D 139 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD 139 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence 5678999999999999888864 1 122378888987665544433232 1123355665
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|-.. +++++|+|++-.+-+|. |. ...|. ..|++...+-|+|||+|++.
T Consensus 140 a~~~l~~--~~~~yDvIi~D~~dp~~---~~-----------------~~l~t-------~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 140 GIKFVAE--TENSFDVIIVDSTDPVG---PA-----------------EGLFT-------KEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred hHHHHhh--CCCcccEEEECCCCCCC---ch-----------------hhhhH-------HHHHHHHHHhcCCCcEEEEe
Confidence 4444333 57889999997665551 10 01122 37899999999999999875
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 191 ~ 191 (283)
T PRK00811 191 S 191 (283)
T ss_pred C
Confidence 3
No 110
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.68 E-value=0.00016 Score=68.63 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=71.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..+..+.. + .|..+++..|+........-++... .+--|..+ +++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~--------~-------~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~---D~~ 182 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAY--------A-------FPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS---DLF 182 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---chh
Confidence 346899999999999998875 2 2446899999987666554444321 11234443 554
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHH----HHHH--HHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVM----EAYA--AQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~----~ay~--~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+. +|++++|+++|+ +|-...+. +...++++. .|.. +..-.....|++...+.|+|||++++
T Consensus 183 ~~-~~~~~fD~Iv~N--------PPy~~~~~----~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 183 AA-LPGRKYDLIVSN--------PPYVDAED----MADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred hc-cCCCCccEEEEC--------CCCCCccc----hhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 43 466789999987 33110000 000111110 0000 00112345789999999999999987
Q ss_pred Ee
Q 037735 192 VM 193 (329)
Q Consensus 192 ~~ 193 (329)
-+
T Consensus 250 e~ 251 (284)
T TIGR03533 250 EV 251 (284)
T ss_pred EE
Confidence 65
No 111
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.66 E-value=0.00016 Score=64.83 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=88.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh-hhhcCCCCcceeeecccccccccc-
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT-LFKSLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~-lf~~l~~~~~~f~~gvpgsFy~~l- 120 (329)
-.||||+|||.|.+-..|.+ . ...+.+.-++-..-... +-+.++ + +-++..+-|
T Consensus 14 gsrVLDLGCGdG~LL~~L~~--------~--------k~v~g~GvEid~~~v~~cv~rGv~----V----iq~Dld~gL~ 69 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKD--------E--------KQVDGYGVEIDPDNVAACVARGVS----V----IQGDLDEGLA 69 (193)
T ss_pred CCEEEecCCCchHHHHHHHH--------h--------cCCeEEEEecCHHHHHHHHHcCCC----E----EECCHHHhHh
Confidence 48999999999986555542 1 12456666654322222 222222 1 334555555
Q ss_pred -CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 121 -FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 121 -fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
||++|+|.|+-|-|||=+.++. ..|++ -|+-|...+++++.=..
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P~-------------------------------~vL~E---mlRVgr~~IVsFPNFg~- 114 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRPD-------------------------------EVLEE---MLRVGRRAIVSFPNFGH- 114 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHHH-------------------------------HHHHH---HHHhcCeEEEEecChHH-
Confidence 8999999999999999876532 23443 36778888888853221
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCc-----------ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----------MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----------~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
|. .-..|.-.|.....+ +.+.|..++++..++. +++|++-..+.
T Consensus 115 -----------W~----~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~-~i~I~~~~~~~ 169 (193)
T PF07021_consen 115 -----------WR----NRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL-GIRIEERVFLD 169 (193)
T ss_pred -----------HH----HHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC-CCEEEEEEEEc
Confidence 21 112333446654443 4556999999999988 59988766654
No 112
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.63 E-value=0.00034 Score=65.22 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=69.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+... .|..+++..|.........-+++. ..+..+..+ +++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~---------------~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~---d~~~ 169 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKE---------------RPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQG---DWFE 169 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHH---------------CCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc---cccC
Confidence 4578999999999988888652 234689999998766555444332 112233333 4433
Q ss_pred ccCCCCceeEEEecccee---cccCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLH---WLSKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alh---WLs~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++++++|+++|+--.. -...++.. ++..-.....+ ...-.++..|++...+-|+|||.+++..
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g----------~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG----------EDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC----------CCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23468999999862110 00000000 00000000000 0012356688999999999999999844
No 113
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.62 E-value=0.00022 Score=67.55 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=69.3
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..++.+.. . .|..+++..|+........-++.. - .+-.|.. +++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~--------~-------~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~---~d~~~~ 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY--------E-------FPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQ---SNLFEP 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---Cchhcc
Confidence 6899999999998888864 2 234689999997665554444321 1 1123444 356553
Q ss_pred cCCCCceeEEEeccceecccC---CCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSK---VPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~---~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+|++++|+++|+--..--++ .|.. .+..... ..+.. + .-.+...+++.-.+.|+|||+|++-+
T Consensus 178 -~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~A-L~gg~-d--------gl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 178 -LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLA-LVGGD-D--------GLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred -CcCCCccEEEECCCCCCcchhhcCCcccccCcHHH-hcCCC-c--------HHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 45568999999722111110 0100 0000000 00000 0 11256688999999999999998766
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.60 E-value=0.00018 Score=69.58 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=68.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~ 118 (329)
+..+|+|.|||||..+..... ....++..|.-..+....-.++.. ... .+.. +++.+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~-----------------~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~---~D~~~ 241 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGL-----------------MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR---GDATK 241 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHH-----------------hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe---cchhc
Confidence 346899999999986544321 114799999987776654444321 112 1223 46654
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..++++++|+++++--..--+..+ .. ....-...+|+.-++.|+|||++++.+...
T Consensus 242 l~~~~~~~D~Iv~dPPyg~~~~~~------------~~----------~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 242 LPLSSESVDAIATDPPYGRSTTAA------------GD----------GLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCcccCCCCEEEECCCCcCccccc------------CC----------chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 446678999999852221100000 00 001123578999999999999999988654
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.58 E-value=0.00041 Score=69.74 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=73.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+.+ .+..+|+..|........+-+++.. ..-.++.+....+..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELM--------------GDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHh--------------CCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 34689999999999999887522 2235799999987776665444321 112344443222211
Q ss_pred cc-CCCCceeEEEeccceecccCCCCCCCCccce------eecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSI------QTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i------~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
.. ++++++|.|+. ++||+ .-|.+ ....+ ++..+. ..+.-..+|..-++-|+|||.|+.
T Consensus 318 ~~~~~~~~fD~Vl~--------DaPCS--g~G~~~r~p~~~~~~~-~~~~~~----l~~~Q~~iL~~a~~~lkpgG~lvy 382 (434)
T PRK14901 318 LKPQWRGYFDRILL--------DAPCS--GLGTLHRHPDARWRQT-PEKIQE----LAPLQAELLESLAPLLKPGGTLVY 382 (434)
T ss_pred ccccccccCCEEEE--------eCCCC--cccccccCcchhhhCC-HHHHHH----HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 34678998874 34443 00110 00111 222222 223346889999999999999999
Q ss_pred Eeccc
Q 037735 192 VMFSV 196 (329)
Q Consensus 192 ~~~g~ 196 (329)
++...
T Consensus 383 stcsi 387 (434)
T PRK14901 383 ATCTL 387 (434)
T ss_pred EeCCC
Confidence 88653
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.57 E-value=0.00033 Score=69.90 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=68.9
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--CcceeeeccccccccccC
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~lf 121 (329)
.+|+|+|||||..++.+.. . .|..+++..|+........-++... .+-.|+. +++.+..+
T Consensus 253 ~rVLDLGcGSG~IaiaLA~--------~-------~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~---gDl~e~~l 314 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVAL--------E-------RPDAFVRASDISPPALETARKNAADLGARVEFAH---GSWFDTDM 314 (423)
T ss_pred CEEEEEeChhhHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE---cchhcccc
Confidence 5899999999999988764 1 2446899999987776655444321 1223444 45655444
Q ss_pred C-CCceeEEEeccceecccCCCCCCCCccceeecCCcHHH----HHHHHH--HHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 P-KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEV----MEAYAA--QFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p-~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~----~~ay~~--q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
| .+++|+++|+- |-....+ . ...++++ ..|... ---..+.++++.-.+.|+|||.+++-.
T Consensus 315 ~~~~~FDLIVSNP--------PYI~~~e--~--~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 315 PSEGKWDIIVSNP--------PYIENGD--K--HLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccCCCccEEEECC--------CCCCcch--h--hhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4 46899999963 3110000 0 0000000 011100 000125578888889999999987644
No 117
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.56 E-value=0.00019 Score=64.65 Aligned_cols=111 Identities=16% Similarity=0.274 Sum_probs=72.6
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcc-eeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRS-YYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~-~f~~gvpgsFy~~lf 121 (329)
.++|+|||.|.....+.. . .|+..++.-|...+-...+.+.+. ...+ .++.+....+...++
T Consensus 20 l~lEIG~G~G~~l~~~A~--------~-------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--------R-------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--------H-------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred eEEEecCCCCHHHHHHHH--------H-------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 889999999999888864 2 577899999998766555444321 1223 466666666678889
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
|++|++-++=++-==|-.+-. .|-++.- ..||..-++.|+|||.+.+.|
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH----~krRl~~-------------------~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRH----HKRRLVN-------------------PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp TTTSEEEEEEES-----SGGG----GGGSTTS-------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCchheEEEeCCCCCcccch----hhhhcCC-------------------chHHHHHHHHcCCCCEEEEEe
Confidence 999999888776555522111 1111111 278999999999999998877
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.56 E-value=0.00037 Score=67.05 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=68.7
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..++.+.. . .|..+|+..|+........-++... .+-.|..+ ++.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~--------~-------~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~---D~~~~ 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY--------A-------FPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIES---DLFAA 196 (307)
T ss_pred CEEEEEechhhHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC---chhhh
Confidence 6899999999999888864 2 3446899999987666554444321 12234443 55543
Q ss_pred cCCCCceeEEEecc------ce-----ecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 120 LFPKSSLHFVHSSY------TL-----HWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 120 lfp~~s~dl~~Ss~------al-----hWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
+|++++|+++|+- .+ .|. .-|.. ... +... = -.....+++...+-|+|||+
T Consensus 197 -l~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~------AL~-gg~d-G--------l~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 197 -LPGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPEL------ALA-AGDD-G--------LDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred -CCCCCccEEEECCCCCCccchhhcCHhhc-cCccc------eee-CCCc-h--------HHHHHHHHHHHHHhcCCCCE
Confidence 4667899999971 00 011 01100 000 0000 0 01234789999999999999
Q ss_pred EEEEe
Q 037735 189 AALVM 193 (329)
Q Consensus 189 l~~~~ 193 (329)
+++-+
T Consensus 259 l~~E~ 263 (307)
T PRK11805 259 LVVEV 263 (307)
T ss_pred EEEEE
Confidence 99864
No 119
>PRK04457 spermidine synthase; Provisional
Probab=97.56 E-value=0.00025 Score=66.63 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=70.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CC--Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQ--SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~--~~~~f~~gvpgsF 116 (329)
+.+.+|+|+|||+|..+..+.. + .|..+++..|+-.......-+.+ +. .+--+..|....|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~--------~-------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYT--------Y-------LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 4567899999999998887764 2 35568899999655544332222 21 1223455654455
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..+. ++++|+|+... .+-- ..|.. -.-..|++...+-|+|||+++++..++
T Consensus 130 l~~~--~~~yD~I~~D~-~~~~-~~~~~-------------------------l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 130 IAVH--RHSTDVILVDG-FDGE-GIIDA-------------------------LCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred HHhC--CCCCCEEEEeC-CCCC-CCccc-------------------------cCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 4332 35799998752 2111 11211 001388999999999999999988765
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
+
T Consensus 181 ~ 181 (262)
T PRK04457 181 D 181 (262)
T ss_pred c
Confidence 4
No 120
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.48 E-value=0.00069 Score=63.23 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=69.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC-
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF- 121 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf- 121 (329)
+.+|+|+|||+|..++.+.+ . .|..+++..|.........-+++.....-|..+ ++.+.+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~--------~-------~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~---D~~~~l~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA--------A-------LDGIELHAADIDPAAVRCARRNLADAGGTVHEG---DLYDALPT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEe---echhhcch
Confidence 46899999999999998875 2 233579999997766665554442211123333 4443221
Q ss_pred -CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHH-----HH--HHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 -PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEA-----YA--AQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 -p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~a-----y~--~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+++|+++|+ +|..... . ....++++.+. .. .....-+..++..-.+-|+|||++++.+
T Consensus 149 ~~~~~fDlVv~N--------PPy~~~~--~--~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 149 ALRGRVDILAAN--------APYVPTD--A--IALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hcCCCEeEEEEC--------CCCCCch--h--hhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13579999876 3311000 0 00112222110 00 0011124588888889999999999876
No 121
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.45 E-value=0.0007 Score=60.36 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=31.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK 99 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~ 99 (329)
...+|+|+|||+|..|..+.. . .|..+|+.-|+.......+-+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~--------~-------~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGL--------L-------CPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHH
Confidence 346899999999999988853 1 234689999997655554433
No 122
>PRK03612 spermidine synthase; Provisional
Probab=97.42 E-value=0.00075 Score=69.46 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=88.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh--cCC--------CCcceeee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK--SLP--------QSRSYYAA 110 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~--~l~--------~~~~~f~~ 110 (329)
+++.+|+|+|||+|..+..+++ + .+..++...|+-.+.....-+ .++ +.+--++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~--------~-------~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~ 360 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK--------Y-------PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN 360 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh--------C-------CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE
Confidence 4578999999999998877763 1 121478888887665554433 111 11223455
Q ss_pred ccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 111 gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
++...|... .++++|+|++...-.|-.. ..+.|. ..|++...+.|+|||.++
T Consensus 361 ~Da~~~l~~--~~~~fDvIi~D~~~~~~~~-------------------~~~L~t-------~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 361 DDAFNWLRK--LAEKFDVIIVDLPDPSNPA-------------------LGKLYS-------VEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred ChHHHHHHh--CCCCCCEEEEeCCCCCCcc-------------------hhccch-------HHHHHHHHHhcCCCeEEE
Confidence 554444322 3468999999854433110 011122 267888889999999999
Q ss_pred EEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--ccCCCHHHHHHHHH
Q 037735 191 LVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--MYNPTPKELEGIIQ 245 (329)
Q Consensus 191 ~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--~y~ps~eE~~~~i~ 245 (329)
+....+ ... -+.+.++.+.|.+.|. .-.. .+.||-.+|.=.+.
T Consensus 413 ~~~~~~-~~~----------~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~a 457 (521)
T PRK03612 413 VQSTSP-YFA----------PKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLA 457 (521)
T ss_pred EecCCc-ccc----------hHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHee
Confidence 876322 111 1344555666666665 1111 56677777666555
No 123
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.38 E-value=0.00043 Score=70.96 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=70.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||||..++.+.. . .|..+++..|+........-++... .+--++. +++++
T Consensus 139 ~~~VLDlG~GsG~iai~la~--------~-------~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~---~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC--------E-------LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIH---SNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHH--------H-------CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeee---cchhh
Confidence 46899999999999998865 2 2446899999976555544333211 1112333 45654
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHH------HHHH-HHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVM------EAYA-AQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~------~ay~-~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
. ++.+++|+++|+--....+..+.. .+++. +.+. +..-..+..+++.-.+-|+|||.+++
T Consensus 201 ~-~~~~~fDlIvsNPPYi~~~~~~~l------------~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 201 N-IEKQKFDFIVSNPPYISHSEKSEM------------AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred h-CcCCCccEEEECCCCCCchhhhhc------------CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 3 466789999997543332222111 00010 0000 00112345788888999999999988
Q ss_pred Ee
Q 037735 192 VM 193 (329)
Q Consensus 192 ~~ 193 (329)
..
T Consensus 268 Ei 269 (506)
T PRK01544 268 EI 269 (506)
T ss_pred EE
Confidence 53
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.37 E-value=0.00096 Score=62.62 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=71.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~-~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+.+ .+.-.|+.+|........+-+++... .+ .+..+....+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-- 134 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALM--------------KNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-- 134 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHc--------------CCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh--
Confidence 34689999999999999887522 11247999999887777665554221 12 2333321111
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..+.+++|.|+. ++|+. . +.+. .+....++..+ .+..+.-..+|..-++-|+|||+|+.++.
T Consensus 135 -~~~~~~fD~Vl~--------D~Pcsg~G~~~~~p~~~~~~~~~~~-----~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 135 -GAAVPKFDAILL--------DAPCSGEGVIRKDPSRKKNWSEEDI-----QEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred -hhhccCCCEEEE--------cCCCCCCcccccChhhhhcCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 123345888864 34444 0 1100 00000111111 12233345789999999999999999986
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
..
T Consensus 201 s~ 202 (264)
T TIGR00446 201 SL 202 (264)
T ss_pred CC
Confidence 54
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.36 E-value=0.00043 Score=65.16 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gvp 113 (329)
+++.+|+|+|||+|..+..+++ . .+..++...|+..+.....-+.++. .+--+..+.+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~ 135 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG 135 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch
Confidence 4566999999999998776653 1 1123688888876655444332221 1112333433
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
..|..+ .++++|+|++..+-.+- |.. ..|. ..|++..++-|+|||.+++.
T Consensus 136 ~~~l~~--~~~~yDvIi~D~~~~~~---~~~-----------------~l~~-------~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 136 FKFLAD--TENTFDVIIVDSTDPVG---PAE-----------------TLFT-------KEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHh--CCCCccEEEEeCCCCCC---ccc-----------------chhH-------HHHHHHHHHHhCCCcEEEEc
Confidence 333333 25789999987654431 100 0111 37788999999999999987
No 126
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.33 E-value=0.00026 Score=64.63 Aligned_cols=142 Identities=19% Similarity=0.321 Sum_probs=84.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh-hhhcCCC----Ccceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT-LFKSLPQ----SRSYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~-lf~~l~~----~~~~f~~gvpgs 115 (329)
.+..+.+|.|||.|.-|..++... + -+|-+.|... .|-. +-+.+.. -..+|.+|.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-------f---------~~VDlVEp~~-~Fl~~a~~~l~~~~~~v~~~~~~gL--- 113 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-------F---------DEVDLVEPVE-KFLEQAKEYLGKDNPRVGEFYCVGL--- 113 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-----------------SEEEEEES-H-HHHHHHHHHTCCGGCCEEEEEES-G---
T ss_pred CCcceEEecccccchhHHHHHHHh-------c---------CEeEEeccCH-HHHHHHHHHhcccCCCcceEEecCH---
Confidence 457899999999999998776311 1 1444555433 3333 2223332 135666664
Q ss_pred cccccCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 116 FYSSLFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 116 Fy~~lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+..-|. +.+|+||.-+++..|++ .||-.||+++.+.|+|||++++==-
T Consensus 114 --Q~f~P~~~~YDlIW~QW~lghLTD-----------------------------~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 114 --QDFTPEEGKYDLIWIQWCLGHLTD-----------------------------EDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp --GG----TT-EEEEEEES-GGGS-H-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hhccCCCCcEeEEEehHhhccCCH-----------------------------HHHHHHHHHHHHhCcCCcEEEEEec
Confidence 444464 79999999888888764 4899999999999999998887321
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
...++. -.++++. --.||.+.++.+++++| +++++-+..
T Consensus 163 ~~~~~~------------------------~~~D~~DsSvTRs~~~~~~lF~~AG-l~~v~~~~Q 202 (218)
T PF05891_consen 163 VSSSGF------------------------DEFDEEDSSVTRSDEHFRELFKQAG-LRLVKEEKQ 202 (218)
T ss_dssp EESSSE------------------------EEEETTTTEEEEEHHHHHHHHHHCT--EEEEEEE-
T ss_pred CCCCCC------------------------cccCCccCeeecCHHHHHHHHHHcC-CEEEEeccc
Confidence 111110 0123333 55699999999999994 998877653
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.30 E-value=0.00072 Score=65.51 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=47.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.+|..+.+.. .+.-+|+.-|.........-+.+ +.....++.| ++.+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~--------------~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g---D~~~ 142 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVV--------------GEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG---DGYY 142 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhc--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC---Chhh
Confidence 34689999999999999886521 11125888888765544333222 2212234444 5545
Q ss_pred ccCCCCceeEEEecccee
Q 037735 119 SLFPKSSLHFVHSSYTLH 136 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alh 136 (329)
.+.+.+++|+|++..+++
T Consensus 143 ~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred cccccCCccEEEECCchH
Confidence 444556799999876543
No 128
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.26 E-value=0.0011 Score=64.61 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC----------Cccee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ----------SRSYY 108 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~----------~~~~f 108 (329)
+..+|||||||-|.-..-... . .+ -.++..|+...-........ .. ...-|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~------------~---~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f 125 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK------------A---KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEF 125 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH------------T---T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEE
T ss_pred CCCeEEEecCCCchhHHHHHh------------c---CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhhe
Confidence 678999999999986544432 1 22 36777888754444433222 10 11223
Q ss_pred eeccccccc---cccCCCC--ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 109 AAGVPGSFY---SSLFPKS--SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 109 ~~gvpgsFy---~~lfp~~--s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
+.+. .|- ...+++. .+|+|-+-+|||..=.- +.-.+.||+..++-|
T Consensus 126 ~~~D--~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes---------------------------e~~ar~~l~Nvs~~L 176 (331)
T PF03291_consen 126 IAAD--CFSESLREKLPPRSRKFDVVSCQFALHYAFES---------------------------EEKARQFLKNVSSLL 176 (331)
T ss_dssp EEST--TCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS---------------------------HHHHHHHHHHHHHTE
T ss_pred eccc--cccchhhhhccccCCCcceeehHHHHHHhcCC---------------------------HHHHHHHHHHHHHhc
Confidence 4332 222 2235554 99999999999985321 122358999999999
Q ss_pred ccCceEEEEecc
Q 037735 184 VPGGLAALVMFS 195 (329)
Q Consensus 184 ~pGG~l~~~~~g 195 (329)
+|||.++.+++.
T Consensus 177 k~GG~FIgT~~d 188 (331)
T PF03291_consen 177 KPGGYFIGTTPD 188 (331)
T ss_dssp EEEEEEEEEEE-
T ss_pred CCCCEEEEEecC
Confidence 999999999974
No 129
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0017 Score=62.18 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CCCc-ceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQSR-SYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~~-~~f~~gvpgsFy 117 (329)
.+..+++|+|||||-+++.... . -. ..++..|+=.---...+.+. ..-. ..++ ..|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k---------L------GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~----~~~~ 220 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK---------L------GA-KKVVGVDIDPQAVEAARENARLNGVELLVQA----KGFL 220 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH---------c------CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhc----cccc
Confidence 4678999999999999998863 1 11 36888887532222222221 1100 0111 1254
Q ss_pred cccCCCC-ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKS-SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~-s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..-.|.+ .+|+|+.|- |-++ +..+...-.+.|+|||++++|-
T Consensus 221 ~~~~~~~~~~DvIVANI----LA~v------------------------------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 221 LLEVPENGPFDVIVANI----LAEV------------------------------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred chhhcccCcccEEEehh----hHHH------------------------------HHHHHHHHHHHcCCCceEEEEe
Confidence 5556664 899999876 2221 1255677788999999999987
No 130
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.19 E-value=0.00058 Score=59.51 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=51.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcce-eeeccccccccccC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSY-YAAGVPGSFYSSLF 121 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~-f~~gvpgsFy~~lf 121 (329)
..+|+|+|||+|..|..+++ + ..+++.-|+.......+-+.+....++ ++ -+++.+-.+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~--------~---------~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii---~~D~~~~~~ 73 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE--------R---------AARVTAIEIDPRLAPRLREKFAAADNLTVI---HGDALKFDL 73 (169)
T ss_pred cCEEEEECCCccHHHHHHHh--------c---------CCeEEEEECCHHHHHHHHHHhccCCCEEEE---ECchhcCCc
Confidence 45899999999999999975 1 136888898766655554444321122 33 357766667
Q ss_pred CCCceeEEEeccceec
Q 037735 122 PKSSLHFVHSSYTLHW 137 (329)
Q Consensus 122 p~~s~dl~~Ss~alhW 137 (329)
++.++|.++|+.-.|+
T Consensus 74 ~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 74 PKLQPYKVVGNLPYNI 89 (169)
T ss_pred cccCCCEEEECCCccc
Confidence 7777899988765554
No 131
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0021 Score=61.41 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=65.8
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CCCcc--eeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQSRS--YYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~~~--~f~~gvpgsFy~~ 119 (329)
.+|||+|||-|..+..+.+ . .|..++.+.|.-..-....-+++ ..... +|.+ +-|+.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~--------~-------~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s----~~~~~ 220 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAK--------K-------SPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS----NLYEP 220 (300)
T ss_pred CcEEEeCCCccHHHHHHHH--------h-------CCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe----ccccc
Confidence 3899999999999999975 2 56789999997422211112222 11122 2322 45566
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.. ++|+|+|+==+|= .. .....+. .+++..-++.|++||.|.+..-|
T Consensus 221 v~~--kfd~IisNPPfh~--G~-------------~v~~~~~-----------~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 221 VEG--KFDLIISNPPFHA--GK-------------AVVHSLA-----------QEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred ccc--cccEEEeCCCccC--Cc-------------chhHHHH-----------HHHHHHHHHhhccCCEEEEEEcC
Confidence 655 8999998733330 00 0111111 27789999999999999998863
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.17 E-value=0.00063 Score=61.95 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=56.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+-.+|||+|||||.+|..+..-+ .+...|+..|.-..-....-+.|. ..+..+..|. -+.
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lv--------------g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd---g~~ 134 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLV--------------GPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD---GSE 134 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--------------STTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES----GGG
T ss_pred CCCEEEEecCCCcHHHHHHHHhc--------------CccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc---hhh
Confidence 34799999999999999886422 222356666654322222222222 1123455554 333
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-+-+...+|.|++..+. .++| ..--+-|++||+|++-+-
T Consensus 135 g~~~~apfD~I~v~~a~---~~ip----------------------------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAV---PEIP----------------------------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBB---SS------------------------------------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeecc---chHH----------------------------------HHHHHhcCCCcEEEEEEc
Confidence 33345679999999887 3566 122345999999998775
No 133
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.16 E-value=0.0015 Score=60.31 Aligned_cols=112 Identities=16% Similarity=0.209 Sum_probs=77.1
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccce-eeecccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSY-YAAGVPGSFYSSL 120 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~-f~~gvpgsFy~~l 120 (329)
-.++|||||.|.....+.. + .|+.-++.-+...+-...+.+.+.. -.++ .+++..-.+.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~--------~-------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAK--------K-------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHH--------H-------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc
Confidence 4679999999998887764 2 6777788888776655555444321 1133 4455544566777
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+|++|+|=++=++.==|-- .--+|.+|-. ..||+.-++.|+|||.+.+.|
T Consensus 115 ~~~~sl~~I~i~FPDPWpK----kRH~KRRl~~-------------------~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPK----KRHHKRRLTQ-------------------PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCCCCCC----ccccccccCC-------------------HHHHHHHHHHccCCCEEEEEe
Confidence 8888999999887666622 2123334322 288999999999999999987
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0014 Score=59.50 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.8
Q ss_pred CCceEEEeeeCCCCcccHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~ 62 (329)
.+..+|||+|||||.+|..+.+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHH
Confidence 4568999999999999988754
No 135
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.08 E-value=0.012 Score=54.28 Aligned_cols=137 Identities=10% Similarity=0.054 Sum_probs=88.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------------Ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------------SRS 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------------~~~ 106 (329)
+..+|++.|||.|.+...|.+ + ..+|+..|+...-....|+..+. ..-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 347999999999999999975 1 26899999997666666663211 011
Q ss_pred eeeeccccccccccCC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 107 YYAAGVPGSFYSSLFP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 107 ~f~~gvpgsFy~~lfp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
-+.+ |+|++--.+ -+.+|+|+=..+|+=| | |+... ++.+..++-|
T Consensus 106 ~~~~---gD~f~l~~~~~~~~~fD~VyDra~~~Al---p---------------p~~R~-----------~Y~~~l~~lL 153 (226)
T PRK13256 106 EIYV---ADIFNLPKIANNLPVFDIWYDRGAYIAL---P---------------NDLRT-----------NYAKMMLEVC 153 (226)
T ss_pred EEEE---ccCcCCCccccccCCcCeeeeehhHhcC---C---------------HHHHH-----------HHHHHHHHHh
Confidence 2333 357653211 2467887777777654 2 33444 4467788899
Q ss_pred ccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 184 VPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 184 ~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+|||.+++.++-.+.. + .++ -+.-+.+|+++.+... |+|+.++.
T Consensus 154 ~pgg~llll~~~~~~~-~-----~GP----------------------Pf~v~~~e~~~lf~~~--~~i~~l~~ 197 (226)
T PRK13256 154 SNNTQILLLVMEHDKK-S-----QTP----------------------PYSVTQAELIKNFSAK--IKFELIDS 197 (226)
T ss_pred CCCcEEEEEEEecCCC-C-----CCC----------------------CCcCCHHHHHHhccCC--ceEEEeee
Confidence 9999999999843211 0 011 2334688999988755 88877764
No 136
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.06 E-value=0.0025 Score=65.41 Aligned_cols=138 Identities=10% Similarity=0.004 Sum_probs=88.8
Q ss_pred HHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchH
Q 037735 15 AYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDF 94 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndf 94 (329)
..|++..+...|.+.-....+ +..+.-.++|+|||.|..+..+.. . .|+..++.-|...+-.
T Consensus 323 ~~q~~~~e~~~p~~~i~~ekl---f~~~~p~~lEIG~G~G~~~~~~A~--------~-------~p~~~~iGiE~~~~~~ 384 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKL---VNEKRKVFLEIGFGMGEHFINQAK--------M-------NPDALFIGVEVYLNGV 384 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHh---CCCCCceEEEECCCchHHHHHHHH--------h-------CCCCCEEEEEeeHHHH
Confidence 377887777777665222222 233456789999999999888864 2 5777888888876655
Q ss_pred HhhhhcCC--CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 95 NTLFKSLP--QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 95 n~lf~~l~--~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
..+.+... ...++.+......+....||++|+|-++-++-==|-.+-. .|.++..
T Consensus 385 ~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh----~krRl~~------------------- 441 (506)
T PRK01544 385 ANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ----KKKRIFN------------------- 441 (506)
T ss_pred HHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC----ccccccC-------------------
Confidence 55444321 1123333211123346678999999999888777732211 2222211
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 037735 173 QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..||+.-++-|+|||.+.+.|
T Consensus 442 ~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 442 KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred HHHHHHHHHhcCCCCEEEEEc
Confidence 278999999999999999877
No 137
>PLN02366 spermidine synthase
Probab=97.04 E-value=0.0025 Score=61.45 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+||++|||+|.....+++ . ++..+|...|+....-...-+.++ +.+--++.+.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk--------~-------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIAR--------H-------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHh--------C-------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 5678999999999997766653 1 122478888877543333222222 22334566654
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..|.+. .|++++|+|++-.+-+|- |. ...|. ..|++..++-|+|||+|+...
T Consensus 155 ~~~l~~-~~~~~yDvIi~D~~dp~~---~~-----------------~~L~t-------~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 155 VEFLKN-APEGTYDAIIVDSSDPVG---PA-----------------QELFE-------KPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHhh-ccCCCCCEEEEcCCCCCC---ch-----------------hhhhH-------HHHHHHHHHhcCCCcEEEECc
Confidence 455443 356789999986544441 10 11222 278999999999999987653
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=97.02 E-value=0.0024 Score=62.78 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh--cCC--------CCcceeee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK--SLP--------QSRSYYAA 110 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~--~l~--------~~~~~f~~ 110 (329)
+++.+||++|||+|.....+++ . .+..+|...|+-.......-+ .++ ..+--+..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk--------~-------~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLK--------Y-------ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHh--------c-------CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 5678999999999986555542 1 223488999998765443222 111 11222445
Q ss_pred ccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 111 gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+.+..|... .++++|+|++... + |.. +.....|. ..|++...+-|+|||+|+
T Consensus 214 ~Da~~fL~~--~~~~YDVIIvDl~-----D-P~~-------------~~~~~LyT-------~EFy~~~~~~LkPgGV~V 265 (374)
T PRK01581 214 CDAKEFLSS--PSSLYDVIIIDFP-----D-PAT-------------ELLSTLYT-------SELFARIATFLTEDGAFV 265 (374)
T ss_pred CcHHHHHHh--cCCCccEEEEcCC-----C-ccc-------------cchhhhhH-------HHHHHHHHHhcCCCcEEE
Confidence 544444332 3567999998732 1 100 00122333 268999999999999998
Q ss_pred EEe
Q 037735 191 LVM 193 (329)
Q Consensus 191 ~~~ 193 (329)
+..
T Consensus 266 ~Qs 268 (374)
T PRK01581 266 CQS 268 (374)
T ss_pred Eec
Confidence 873
No 139
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0017 Score=61.61 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=66.1
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---CcceeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~lf 121 (329)
+|+|+|||||..++.+.. . .|...|+..|+...-....-++... .+.+++.+ +.++.+-
T Consensus 113 ~ilDlGTGSG~iai~la~--------~-------~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~---dlf~~~~ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAK--------E-------GPDAEVIAVDISPDALALARENAERNGLVRVLVVQS---DLFEPLR 174 (280)
T ss_pred cEEEecCChHHHHHHHHh--------h-------CcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee---ecccccC
Confidence 899999999999999975 2 3446899999976433333222211 11122322 5555554
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecC----CcHHHH------HHHHHH-HhhcHHHHHHHHHHHhccCceEE
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRR----FVNEVM------EAYAAQ-FNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~----~~~~~~------~ay~~q-~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
. .+|+++|| +| |+.. ..|++. ..+..- --...++|+..-.+-|+|||.++
T Consensus 175 ~--~fDlIVsN--------PP---------Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 175 G--KFDLIVSN--------PP---------YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred C--ceeEEEeC--------CC---------CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 4 79999987 33 1111 111110 011110 11245688999999999999988
Q ss_pred EEe
Q 037735 191 LVM 193 (329)
Q Consensus 191 ~~~ 193 (329)
+-.
T Consensus 236 le~ 238 (280)
T COG2890 236 LEI 238 (280)
T ss_pred EEE
Confidence 765
No 140
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.94 E-value=0.021 Score=55.47 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=110.1
Q ss_pred CCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCcc
Q 037735 2 VGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIE 81 (329)
Q Consensus 2 ~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe 81 (329)
-||-+..+|.-+-.+|+.....-.-..++.. +.+..+ ...-..+|.|-|.|..+..+++ + .|.
T Consensus 139 l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il-~~~~Gf-~~v~~avDvGgGiG~v~k~ll~--------~-------fp~ 201 (342)
T KOG3178|consen 139 LGGYGGADERFSKDFNGSMSFLSTLVMKKIL-EVYTGF-KGVNVAVDVGGGIGRVLKNLLS--------K-------YPH 201 (342)
T ss_pred hhhhcccccccHHHHHHHHHHHHHHHHHhhh-hhhccc-ccCceEEEcCCcHhHHHHHHHH--------h-------CCC
Confidence 3455566665555555554332222222211 111111 2356789999999999999886 3 566
Q ss_pred ceEEecCCCcchHHhhhhcC-CCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHH
Q 037735 82 FQVFFNDHSDNDFNTLFKSL-PQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEV 160 (329)
Q Consensus 82 ~~v~~nDLp~ndfn~lf~~l-~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~ 160 (329)
+..+-=|+|.=.-. ...+ |+ +.=+.|+++.. .|++- ++|--+.||=+.+
T Consensus 202 ik~infdlp~v~~~--a~~~~~g-----V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD-------------------- 251 (342)
T KOG3178|consen 202 IKGINFDLPFVLAA--APYLAPG-----VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD-------------------- 251 (342)
T ss_pred CceeecCHHHHHhh--hhhhcCC-----cceeccccccc-CCCcC--eEEEEeecccCCh--------------------
Confidence 78887788742211 1112 21 23355678888 88664 8887777763222
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccC--CcccchHHHHHHHHHHHHhcCCcCCCcccCCCHH
Q 037735 161 MEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVN--NAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPK 238 (329)
Q Consensus 161 ~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~--~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~e 238 (329)
+|+.+||+.+++-|.|||.+++.=.-.+++...+. .......+.+..+.. .-|+ -++.+
T Consensus 252 ---------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~Gk-------ert~~ 312 (342)
T KOG3178|consen 252 ---------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGGK-------ERTLK 312 (342)
T ss_pred ---------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHh---ccce-------eccHH
Confidence 47889999999999999999987653332111111 112222333332222 2253 38999
Q ss_pred HHHHHHHhCCceEEeEEEE
Q 037735 239 ELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 239 E~~~~i~~~g~f~i~~~e~ 257 (329)
|++..+..+ +|....+-.
T Consensus 313 e~q~l~~~~-gF~~~~~~~ 330 (342)
T KOG3178|consen 313 EFQALLPEE-GFPVCMVAL 330 (342)
T ss_pred HHHhcchhh-cCceeEEEe
Confidence 999998888 487765543
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.87 E-value=0.0029 Score=58.40 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsF 116 (329)
.++.+|+|+|||+|.-++.+...+ .+..+++..|.........-+.+ +- .+.-+..|.....
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 357899999999999888876522 23468999998754333322222 11 1122344433333
Q ss_pred ccccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..++. ++.++|+++-- .++ .....++....+-|+|||++++-.
T Consensus 133 L~~l~~~~~~~~fD~VfiD--------a~k--------------------------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVD--------ADK--------------------------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHhCCCCCCCCEEEEC--------CCH--------------------------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 33332 24578888652 110 112245777788999999988754
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=96.83 E-value=0.0027 Score=58.92 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=49.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|..++.+...+ .. .+..+|+.-|+-.+.....-++++. ..+.. ++|.... +
T Consensus 50 ~grVLDlG~GSG~Lalala~~~--------~~----~~~~~V~aVEID~~Al~~Ar~n~~~--~~~~~---~D~~~~~-~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMM--------MY----AKPREIVCVELNHTYYKLGKRIVPE--ATWIN---ADALTTE-F 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhc--------cc----CCCcEEEEEECCHHHHHHHHhhccC--CEEEE---cchhccc-c
Confidence 4699999999999988876522 11 1236899999988777766665543 23444 3564333 3
Q ss_pred CCceeEEEec
Q 037735 123 KSSLHFVHSS 132 (329)
Q Consensus 123 ~~s~dl~~Ss 132 (329)
++++|+|+|+
T Consensus 112 ~~~FDlIIsN 121 (241)
T PHA03412 112 DTLFDMAISN 121 (241)
T ss_pred cCCccEEEEC
Confidence 5789999987
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.77 E-value=0.0044 Score=55.36 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~ 118 (329)
.+-.+++|+|||||.-|..++. + .|.-++|.-|--..-...+-++...+ .++-+ +.|+.++
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~-~--------------~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~v--v~g~Ap~ 95 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWAL-A--------------GPSGRVIAIERDEEALELIERNAARFGVDNLEV--VEGDAPE 95 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHH-h--------------CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEE--EeccchH
Confidence 3456999999999999999872 1 35568888887655555554443221 12222 2344543
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
-|- ++|.. ..|++.++. .+...|+...+-|+|||+|+.+..-.
T Consensus 96 ~L~------------------~~~~~----daiFIGGg~-------------~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 96 ALP------------------DLPSP----DAIFIGGGG-------------NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred hhc------------------CCCCC----CEEEECCCC-------------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 332 23311 235554431 33467899999999999999988543
No 144
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.75 E-value=0.0054 Score=58.74 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=57.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh-----hhcCCCCcceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL-----FKSLPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l-----f~~l~~~~~~f~~gvpgsFy 117 (329)
..+|+|+|||||-+++.... . -. -+|+..|.-..-.... .+.+.. .+.+. .+.+
T Consensus 162 g~~vLDvG~GSGILaiaA~k---------l------GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~--~~~v~-~~~~-- 220 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAK---------L------GA-KKVVAIDIDPLAVEAARENAELNGVED--RIEVS-LSED-- 220 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHH---------T------TB-SEEEEEESSCHHHHHHHHHHHHTT-TT--CEEES-CTSC--
T ss_pred CCEEEEeCCcHHHHHHHHHH---------c------CC-CeEEEecCCHHHHHHHHHHHHHcCCCe--eEEEE-Eecc--
Confidence 46999999999999988863 1 12 3688888764322222 222222 22222 1112
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+...+|+|+++--.+= +........+-|+|||.|++|-+=
T Consensus 221 ---~~~~~~dlvvANI~~~v----------------------------------L~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 221 ---LVEGKFDLVVANILADV----------------------------------LLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp ---TCCS-EEEEEEES-HHH----------------------------------HHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ---cccccCCEEEECCCHHH----------------------------------HHHHHHHHHHhhCCCCEEEEcccc
Confidence 34588999998754332 224566678889999999998754
No 145
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.73 E-value=0.02 Score=54.63 Aligned_cols=169 Identities=19% Similarity=0.223 Sum_probs=92.9
Q ss_pred HhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhh
Q 037735 23 ILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFK 99 (329)
Q Consensus 23 ~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~ 99 (329)
++..+|+++|..+.. ...+++|+|+=||+|.- +++++... + ..| .++.++|...-.... +.+
T Consensus 118 ~l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-~----~~~-~~i~LrDys~~Nv~~g~~li~ 182 (311)
T PF12147_consen 118 HLEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-P----ERP-DSILLRDYSPINVEKGRALIA 182 (311)
T ss_pred HHHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-C----CCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 355666777665532 46799999999999986 33444332 1 123 489999986432222 222
Q ss_pred c--CCCCcceeeecccccc--ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhc-HHH
Q 037735 100 S--LPQSRSYYAAGVPGSF--YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNND-FQT 174 (329)
Q Consensus 100 ~--l~~~~~~f~~gvpgsF--y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D-~~~ 174 (329)
. |.. -.-|..|...+. |..+-| ..|+++.|=-.--+++- | ..+
T Consensus 183 ~~gL~~-i~~f~~~dAfd~~~l~~l~p--~P~l~iVsGL~ElF~Dn-----------------------------~lv~~ 230 (311)
T PF12147_consen 183 ERGLED-IARFEQGDAFDRDSLAALDP--APTLAIVSGLYELFPDN-----------------------------DLVRR 230 (311)
T ss_pred HcCCcc-ceEEEecCCCCHhHhhccCC--CCCEEEEecchhhCCcH-----------------------------HHHHH
Confidence 2 111 113555543333 233334 34555555444443321 2 224
Q ss_pred HHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHh-cCCcCCCcccCCCHHHHHHHHHhCCceEEe
Q 037735 175 FLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTK-MGILSKEKMYNPTPKELEGIIQRNGNFTIE 253 (329)
Q Consensus 175 FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~-eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~ 253 (329)
-|+--+..|.|||.|+.+. .+-. | -.+.+..+|..--. +..+ |..+|..|+.++++.+| |+=.
T Consensus 231 sl~gl~~al~pgG~lIyTg--QPwH-P--------Qle~IAr~LtsHr~g~~Wv----MRrRsq~EmD~Lv~~aG-F~K~ 294 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTG--QPWH-P--------QLEMIARVLTSHRDGKAWV----MRRRSQAEMDQLVEAAG-FEKI 294 (311)
T ss_pred HHHHHHHHhCCCcEEEEcC--CCCC-c--------chHHHHHHHhcccCCCceE----EEecCHHHHHHHHHHcC-Cchh
Confidence 4888899999999998765 2211 1 01233333332110 1111 77799999999999995 7643
Q ss_pred E
Q 037735 254 R 254 (329)
Q Consensus 254 ~ 254 (329)
+
T Consensus 295 ~ 295 (311)
T PF12147_consen 295 D 295 (311)
T ss_pred h
Confidence 3
No 146
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.67 E-value=0.002 Score=60.86 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=80.9
Q ss_pred hHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 037735 10 YASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH 89 (329)
Q Consensus 10 Y~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL 89 (329)
|++.|..=........|+..+.+... +.-..++|.|||-|.-+-. .|...++-.|+
T Consensus 18 Yd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~-------------------~p~~~~ig~D~ 73 (293)
T KOG1331|consen 18 YDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGV-------------------NPLCLIIGCDL 73 (293)
T ss_pred HHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcC-------------------CCcceeeecch
Confidence 44444432222233344555544432 3357889999999874321 24456777777
Q ss_pred CcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 90 SDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 90 p~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
..--... -+..... .... ++....++++.|+|...|.+.+||||.--.
T Consensus 74 c~~l~~~-ak~~~~~-~~~~----ad~l~~p~~~~s~d~~lsiavihhlsT~~R-------------------------- 121 (293)
T KOG1331|consen 74 CTGLLGG-AKRSGGD-NVCR----ADALKLPFREESFDAALSIAVIHHLSTRER-------------------------- 121 (293)
T ss_pred hhhhccc-cccCCCc-eeeh----hhhhcCCCCCCccccchhhhhhhhhhhHHH--------------------------
Confidence 6422111 1111110 1211 145577899999999999999999985321
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
=.+.++...++|+|||.+++..-+.....
T Consensus 122 --R~~~l~e~~r~lrpgg~~lvyvwa~~q~~ 150 (293)
T KOG1331|consen 122 --RERALEELLRVLRPGGNALVYVWALEQHQ 150 (293)
T ss_pred --HHHHHHHHHHHhcCCCceEEEEehhhccC
Confidence 12558999999999999999988865543
No 147
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.67 E-value=0.03 Score=51.28 Aligned_cols=139 Identities=23% Similarity=0.340 Sum_probs=85.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC------Cc---------
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ------SR--------- 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~------~~--------- 105 (329)
....+|+.-|||.|.....|.+ + ..+|+..|+...--...|+.-.. ..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~--------~---------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAE--------Q---------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHH--------T---------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCCCeEEEeCCCChHHHHHHHH--------C---------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 4457999999999999888874 1 26899999997665555543211 00
Q ss_pred ceeeeccccccccccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 106 SYYAAGVPGSFYSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 106 ~~f~~gvpgsFy~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
--+.+ |+||+ +-|. +++|+|+=-.+|+=| |. +..+ ++.+.-++-|
T Consensus 99 i~~~~---gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp---------------~~R~-----------~Ya~~l~~ll 145 (218)
T PF05724_consen 99 ITIYC---GDFFE-LPPEDVGKFDLIYDRTFLCAL---PP---------------EMRE-----------RYAQQLASLL 145 (218)
T ss_dssp EEEEE---S-TTT-GGGSCHHSEEEEEECSSTTTS----G---------------GGHH-----------HHHHHHHHCE
T ss_pred eEEEE---ccccc-CChhhcCCceEEEEecccccC---CH---------------HHHH-----------HHHHHHHHHh
Confidence 11333 46876 2222 358999988888764 32 2333 4566788999
Q ss_pred ccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 184 VPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 184 ~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+|||.+++.++-.+.... .++ -|.-+.+|+.+.+.. .|+|+.++..
T Consensus 146 ~p~g~~lLi~l~~~~~~~-----~GP----------------------Pf~v~~~ev~~l~~~--~f~i~~l~~~ 191 (218)
T PF05724_consen 146 KPGGRGLLITLEYPQGEM-----EGP----------------------PFSVTEEEVRELFGP--GFEIEELEEE 191 (218)
T ss_dssp EEEEEEEEEEEES-CSCS-----SSS----------------------S----HHHHHHHHTT--TEEEEEEEEE
T ss_pred CCCCcEEEEEEEcCCcCC-----CCc----------------------CCCCCHHHHHHHhcC--CcEEEEEecc
Confidence 999996555553222110 011 334578999999984 4999999974
No 148
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.61 E-value=0.0068 Score=58.71 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-C-Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-Q-SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~-~~~~f~~gvpgsFy~ 118 (329)
+...+|+|+|||+|.=|..+++.+.. . ...+..+--|+.........+.|. . .+.+-+.|+-|+|..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~----~-------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALER----Q-------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHh----c-------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34568999999999999999876621 1 123689999999877777777776 2 223445566666743
Q ss_pred ccCCCCceeEEEeccceecccC--CCCCCCCccceee-----cCCcHHHHHHHHHHHhhcHHHHHHHHHH-HhccCceEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSK--VPKVDGVEGSIQT-----RRFVNEVMEAYAAQFNNDFQTFLNTRAQ-ELVPGGLAA 190 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~--~p~~~~n~g~i~~-----~~~~~~~~~ay~~q~~~D~~~FL~~ra~-eL~pGG~l~ 190 (329)
- ++||.+ .+.. +..+.. ...+|+.. ..||+.-++ .|.|||.|+
T Consensus 144 ~---------------l~~l~~~~~~~~---~r~~~flGSsiGNf~~~ea-----------~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 144 G---------------LAWLKRPENRSR---PTTILWLGSSIGNFSRPEA-----------AAFLAGFLATALSPSDSFL 194 (319)
T ss_pred H---------------HhhcccccccCC---ccEEEEeCccccCCCHHHH-----------HHHHHHHHHhhCCCCCEEE
Confidence 2 333322 1100 001111 12233322 378888888 999999999
Q ss_pred EEecccCC
Q 037735 191 LVMFSVPD 198 (329)
Q Consensus 191 ~~~~g~~~ 198 (329)
+++=+..+
T Consensus 195 iG~D~~k~ 202 (319)
T TIGR03439 195 IGLDGCKD 202 (319)
T ss_pred EecCCCCC
Confidence 98855544
No 149
>PLN02672 methionine S-methyltransferase
Probab=96.53 E-value=0.0076 Score=66.69 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=70.8
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------------------C
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------------------S 104 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------------------~ 104 (329)
.+|+|+|||+|..++.+.. + .|..+|+..|+.........+++.. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~--------~-------~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~ 184 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAE--------K-------WLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLD 184 (1082)
T ss_pred CEEEEEecchHHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccc
Confidence 5899999999999999875 2 2335899999987776665444311 0
Q ss_pred cceeeeccccccccccCCC--CceeEEEeccceecccCCCCCCCCccceeecC-----CcHHHHHH-----------HHH
Q 037735 105 RSYYAAGVPGSFYSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRR-----FVNEVMEA-----------YAA 166 (329)
Q Consensus 105 ~~~f~~gvpgsFy~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~-----~~~~~~~a-----------y~~ 166 (329)
+--|+. ++.++.+ +. ..+|+|+|+ +| |+.. -+++|.+- |..
T Consensus 185 rV~f~~---sDl~~~~-~~~~~~fDlIVSN--------PP---------YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~A 243 (1082)
T PLN02672 185 RVEFYE---SDLLGYC-RDNNIELDRIVGC--------IP---------QILNPNPEAMSKLVTENASEEFLYSLSNYCA 243 (1082)
T ss_pred cEEEEE---Cchhhhc-cccCCceEEEEEC--------CC---------cCCCcchhhcChhhhhccccccccccCcccc
Confidence 123443 3554443 32 269999985 34 2221 12223210 111
Q ss_pred HHh----h----cHHHHHHHHHHHhccCceEEEEecc
Q 037735 167 QFN----N----DFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 167 q~~----~----D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+. . ...+++..-.+.|+|||+|+|-+-.
T Consensus 244 L~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 244 LQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 110 1 1367888888999999999988754
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.52 E-value=0.0053 Score=61.89 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=62.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|+.+.... .+|+..|....+....-+++. . ..--|..|.--++...
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~-----------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA-----------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC-----------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 4689999999999999886411 378999998777666544431 1 1223555432222111
Q ss_pred -cCCCCceeEEEec-------cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHH
Q 037735 120 -LFPKSSLHFVHSS-------YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFL 176 (329)
Q Consensus 120 -lfp~~s~dl~~Ss-------~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL 176 (329)
.++++++|++++. -.++|+.++. .+.|.+.+..|.. +++|+..+.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~-----~~~ivyvSCnp~t-------laRDl~~L~ 413 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAGAAEVMQALAKLG-----PKRIVYVSCNPAT-------LARDAGVLV 413 (443)
T ss_pred hhhhcCCCCEEEECcCCcChHHHHHHHHhcC-----CCeEEEEEeChHH-------hhccHHHHh
Confidence 2456789999864 3456666542 2344444445543 456777664
No 151
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.39 E-value=0.0071 Score=57.73 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=67.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------C--cceeee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------S--RSYYAA 110 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------~--~~~f~~ 110 (329)
.++||...|||||-=.=.+.=-+. +..... ...++|+..|+..+.....-+...+ . ..||.-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~----e~~~~~---~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~ 187 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLA----DTLGTA---PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMR 187 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH----Hhhccc---CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHccc
Confidence 469999999999953322221111 111110 1148999999987666654333321 1 134532
Q ss_pred c---ccc------------ccc--cc---cC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 111 G---VPG------------SFY--SS---LF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 111 g---vpg------------sFy--~~---lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
. ..| .|- +- .+ |.+.+|+|+|-+.|..++..
T Consensus 188 ~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~---------------------------- 239 (287)
T PRK10611 188 GTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT---------------------------- 239 (287)
T ss_pred ccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH----------------------------
Confidence 1 011 111 11 12 25789999998888876532
Q ss_pred hcHHHHHHHHHHHhccCceEEEEe
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-.+.++.-++.|+|||+|+++-
T Consensus 240 -~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 240 -TQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred -HHHHHHHHHHHHhCCCcEEEEeC
Confidence 23477999999999999886643
No 152
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.38 E-value=0.0044 Score=59.68 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=70.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc---chHHhhhhcCCC------Ccceeeecc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD---NDFNTLFKSLPQ------SRSYYAAGV 112 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~---ndfn~lf~~l~~------~~~~f~~gv 112 (329)
+--.++|||||-|.--+-.-. . .+ -+++..|.+. |+...-++.+.. +...|++|.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~k------------A---gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D 180 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDK------------A---GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD 180 (389)
T ss_pred cccccceeccCCcccHhHhhh------------h---cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec
Confidence 345678999999986444432 1 12 2567777763 444443443321 235677775
Q ss_pred cccccccc---C--CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 113 PGSFYSSL---F--PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 113 pgsFy~~l---f--p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
+|+++| + ++-++|++=|=+|+|+.=... .-...+|+.-++.|+|||
T Consensus 181 --c~~~~l~d~~e~~dp~fDivScQF~~HYaFete---------------------------e~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 181 --CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE---------------------------ESARIALRNVAKCLKPGG 231 (389)
T ss_pred --cchhHHHHhccCCCCCcceeeeeeeEeeeeccH---------------------------HHHHHHHHHHHhhcCCCc
Confidence 787665 3 455599999999999732110 112477999999999999
Q ss_pred eEEEEecc
Q 037735 188 LAALVMFS 195 (329)
Q Consensus 188 ~l~~~~~g 195 (329)
.++-+++-
T Consensus 232 ~FIgTiPd 239 (389)
T KOG1975|consen 232 VFIGTIPD 239 (389)
T ss_pred EEEEecCc
Confidence 99988854
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.38 E-value=0.0059 Score=53.70 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=59.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-----Ccceeee--ccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-----SRSYYAA--GVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-----~~~~f~~--gvp 113 (329)
....+|+|||||+|-.++.+... .....|++.|++. =...+-.++.. ...+-+. -.+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~---------------~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL---------------FGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG 107 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred cCCceEEEECCccchhHHHHHhc---------------cCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence 35679999999999888888642 0124899999986 32333333211 1111111 111
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
-......+.++++|+|+.+=++.+= +.+..+++.-.+-|+|+|.++++.
T Consensus 108 ~~~~~~~~~~~~~D~IlasDv~Y~~-------------------------------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 108 DELDSDLLEPHSFDVILASDVLYDE-------------------------------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp S-HHHHHHS-SSBSEEEEES--S-G-------------------------------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CcccccccccccCCEEEEecccchH-------------------------------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1122233455678888887776652 234578888899999999977777
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
.-|.
T Consensus 157 ~~R~ 160 (173)
T PF10294_consen 157 KRRR 160 (173)
T ss_dssp E-S-
T ss_pred CEec
Confidence 6664
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.35 E-value=0.024 Score=56.49 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=67.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C---Ccceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q---SRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~---~~~~f~~gvpgsFy 117 (329)
..+|||+|||||..++..+. ....+|+..|+.......+-+++. . .+-.++.|.--++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~----------------~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM----------------GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh----------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 36899999999998765432 111378999998766555433331 1 12235555422222
Q ss_pred cccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++- ...++|+|++ ++|.- ..+.... ....+++..++..-.+-|+|||.+++.+
T Consensus 285 ~~~~~~~~~fDlVil--------DPP~f---------~~~k~~l-----~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 285 RTYRDRGEKFDVIVM--------DPPKF---------VENKSQL-----MGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHhcCCCCCEEEE--------CCCCC---------CCChHHH-----HHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2221 3457999984 45522 1111111 1345577788888899999999998766
No 155
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.34 E-value=0.051 Score=49.70 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=85.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...++||+||=+..|...- .+-+.|..-||-+.+ . .+.- -+|.++.+
T Consensus 51 ~~lrlLEVGals~~N~~s~------------------~~~fdvt~IDLns~~-~----------~I~q----qDFm~rpl 97 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST------------------SGWFDVTRIDLNSQH-P----------GILQ----QDFMERPL 97 (219)
T ss_pred ccceEEeecccCCCCcccc------------------cCceeeEEeecCCCC-C----------Ccee----eccccCCC
Confidence 4699999999988776543 223678888986422 1 1111 27889887
Q ss_pred C---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce-----EEEEe
Q 037735 122 P---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL-----AALVM 193 (329)
Q Consensus 122 p---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~-----l~~~~ 193 (329)
| .+++|+|.+|..|.. +|.+ ++=-.-|+...+-|+|+|. |++.+
T Consensus 98 p~~~~e~FdvIs~SLVLNf---VP~p-------------------------~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNF---VPDP-------------------------KQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred CCCcccceeEEEEEEEEee---CCCH-------------------------HHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 5 789999999999999 5533 0111448888899999999 99988
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+-+.-. + -.|-+.+-++++++.-| |...+.+.
T Consensus 150 P~~Cv~-------------------------N------SRy~~~~~l~~im~~LG-f~~~~~~~ 181 (219)
T PF11968_consen 150 PLPCVT-------------------------N------SRYMTEERLREIMESLG-FTRVKYKK 181 (219)
T ss_pred CchHhh-------------------------c------ccccCHHHHHHHHHhCC-cEEEEEEe
Confidence 643310 0 23466788888888874 88776654
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.32 E-value=0.0046 Score=58.26 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=44.9
Q ss_pred cchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 037735 8 HSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFN 87 (329)
Q Consensus 8 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~n 87 (329)
.+|.+|-..+..++..+...+. ..+..+|+|+|||+|..|..+.+ + .+ +|+.-
T Consensus 18 k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~--------~-------~~--~v~av 70 (272)
T PRK00274 18 KSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLE--------R-------AA--KVTAV 70 (272)
T ss_pred cccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHH--------h-------CC--cEEEE
Confidence 4566665566666655544432 23446899999999999999975 2 12 68888
Q ss_pred CCCcchHHhhhhcC
Q 037735 88 DHSDNDFNTLFKSL 101 (329)
Q Consensus 88 DLp~ndfn~lf~~l 101 (329)
|.-..+...+-+.+
T Consensus 71 E~d~~~~~~~~~~~ 84 (272)
T PRK00274 71 EIDRDLAPILAETF 84 (272)
T ss_pred ECCHHHHHHHHHhh
Confidence 98877766654444
No 157
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.27 E-value=0.0047 Score=55.70 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=60.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh---------hcCCCC--cceee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF---------KSLPQS--RSYYA 109 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf---------~~l~~~--~~~f~ 109 (329)
..+++|...|||||-=.-.+.=-+- +..... ..-.++++..|+...-....- +.+|+. ..||.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~----e~~~~~--~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~ 103 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLL----ELLPGA--LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFT 103 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHH----HHH-S---TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEE
T ss_pred CCCeEEEECCCCCChhHHHHHHHHH----HHhccc--CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhcc
Confidence 4789999999999954333321111 111111 122589999999765444422 222221 24553
Q ss_pred ecccccc-----------------ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 110 AGVPGSF-----------------YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 110 ~gvpgsF-----------------y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
...++.| .+...|.+.+|+|+|-+.|-.++... =
T Consensus 104 ~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-----------------------------~ 154 (196)
T PF01739_consen 104 ERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-----------------------------Q 154 (196)
T ss_dssp EE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----------------------------H
T ss_pred ccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----------------------------H
Confidence 3222211 12234677899999999888876321 1
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 037735 173 QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+.++.-++.|+|||+|+++-
T Consensus 155 ~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 155 QRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHHHHGGGEEEEEEEEE-T
T ss_pred HHHHHHHHHHcCCCCEEEEec
Confidence 367899999999999998864
No 158
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.17 E-value=0.024 Score=49.65 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=59.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccc-----c
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGS-----F 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgs-----F 116 (329)
+..+++|+|||+|..|..+++.. .+...|+..|+...+ . ++ ...++.|..-+ -
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~~--~----~~--~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPMD--P----LQ--NVSFIQGDITNPENIKD 80 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSSTG--S-----T--TEEBTTGGGEEEEHSHH
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEeccccc--c----cc--ceeeeecccchhhHHHh
Confidence 57999999999999999998521 233689999998651 0 01 01111111110 1
Q ss_pred ccccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
....++. ..+|+++|=.+..+..+.- . ......+. ...-|..--+.|+|||.|++-++
T Consensus 81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~-~-----------d~~~~~~l--------~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMAPNVSGDRN-I-----------DEFISIRL--------ILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GGGSHGTTTCSESEEEE-------SSHH-S-----------SHHHHHHH--------HHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhhccccccCcceeccccccCCCCchh-h-----------HHHHHHHH--------HHHHHHHHHhhhcCCCEEEEEec
Confidence 1233333 6899999877655533210 0 00001111 11224455577999999999888
Q ss_pred ccC
Q 037735 195 SVP 197 (329)
Q Consensus 195 g~~ 197 (329)
...
T Consensus 141 ~~~ 143 (181)
T PF01728_consen 141 KGP 143 (181)
T ss_dssp SST
T ss_pred cCc
Confidence 733
No 159
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.15 E-value=0.008 Score=56.18 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=60.4
Q ss_pred chHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecC
Q 037735 9 SYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFND 88 (329)
Q Consensus 9 sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nD 88 (329)
+|-||=...+.++..+...+. ..+..+|+|+|||+|..|..+.+ + . .+++.-|
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~----------~~~~~~VLEIG~G~G~lt~~L~~--------~--------~-~~v~~vE 58 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE----------DTDGDPVLEIGPGKGALTDELAK--------R--------A-KKVYAIE 58 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC----------CCCcCeEEEEeCccCHHHHHHHH--------h--------C-CEEEEEE
Confidence 444555555555555444332 13347899999999999999975 1 1 3688888
Q ss_pred CCcchHHhhhhcCCCCcc-eeeeccccccccccCCCCceeEEEeccceec
Q 037735 89 HSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSLFPKSSLHFVHSSYTLHW 137 (329)
Q Consensus 89 Lp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhW 137 (329)
+-......+-+.+....+ -++.| ++.+-.+| .+|.++|+...++
T Consensus 59 id~~~~~~l~~~~~~~~~v~ii~~---D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 59 LDPRLAEFLRDDEIAAGNVEIIEG---DALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEe---ccccCCch--hceEEEEcCCccc
Confidence 887666665544432122 23443 56543344 4799999877766
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.11 E-value=0.0054 Score=59.55 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=66.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc--chHHhhhhcCCCCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD--NDFNTLFKSLPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~--ndfn~lf~~l~~~~~~f~~gvpgsFy~~ 119 (329)
+.-+|+|.|||||.+|+.-+++= + ..|+.-|-.. +.-.++++.- ....+ +--+.|.-.+-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG---------------A-~~V~aVe~S~ia~~a~~iv~~N-~~~~i-i~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG---------------A-RKVYAVEASSIADFARKIVKDN-GLEDV-ITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC---------------c-ceEEEEechHHHHHHHHHHHhc-Cccce-EEEeecceEEE
Confidence 45689999999999998876411 1 3566666431 1111122211 11111 22244566566
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
.+|-..+|+++|-|-=.||- ++.=|.+.|-+|=+-|+|||.++
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll----------------------------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLL----------------------------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecCccceeEEeehhhhHHHH----------------------------HhhhhhhhhhhhhhccCCCceEc
Confidence 68888999999998888864 23345577999999999999985
No 161
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.00 E-value=0.026 Score=60.28 Aligned_cols=113 Identities=10% Similarity=0.091 Sum_probs=68.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C---Ccceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q---SRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~---~~~~f~~gvpgsFy 117 (329)
..+|||+|||||..|+.+.. . .. .+|+..|+........-+++. . .+--|+.+..-.+.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~--------~-------Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL--------G-------GA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL 602 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------C-------CC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH
Confidence 36899999999999999874 1 11 269999998766665544331 1 12234554322232
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++ .+++|+|++. +|.-... .....+ ....+|+..++..-.+-|+|||.+++++
T Consensus 603 ~~~--~~~fDlIilD--------PP~f~~~-------~~~~~~-----~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 603 KEA--REQFDLIFID--------PPTFSNS-------KRMEDS-----FDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred HHc--CCCcCEEEEC--------CCCCCCC-------Cccchh-----hhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 232 5689999875 4421000 000011 1234566778888899999999998875
No 162
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.94 E-value=0.061 Score=50.87 Aligned_cols=117 Identities=20% Similarity=0.334 Sum_probs=72.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----------CCC--cceee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----------PQS--RSYYA 109 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----------~~~--~~~f~ 109 (329)
+++||.-.|||||-=.=.+.-.+.+ ..... ....++|+..|+-..-....-... +.. +.||.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e----~~~~~--~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~ 169 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLE----ALGKL--AGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFE 169 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHH----Hhccc--cCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEe
Confidence 5899999999999644433322222 22110 134599999999765544432222 211 35776
Q ss_pred eccccccc--------------cccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 110 AGVPGSFY--------------SSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 110 ~gvpgsFy--------------~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
-+..|+|- +.+. ..+-+|+|+|=+.|=.+++.-.
T Consensus 170 ~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q----------------------------- 220 (268)
T COG1352 170 RGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ----------------------------- 220 (268)
T ss_pred ecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH-----------------------------
Confidence 65544332 1111 3355888888888888765321
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 037735 173 QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+.++.-+.-|+|||.|++.-
T Consensus 221 ~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 221 ERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcc
Confidence 267888999999999998754
No 163
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=95.83 E-value=0.059 Score=50.23 Aligned_cols=85 Identities=12% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
-..-+|+|.+-+--.|.. ..... .-+.+||+..++-|.|||+|++-=
T Consensus 163 ~~~~fDiIlcLSiTkWIH-------------LNwgD------------~GL~~ff~kis~ll~pgGiLvvEP-------- 209 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIH-------------LNWGD------------DGLRRFFRKISSLLHPGGILVVEP-------- 209 (288)
T ss_pred ccccccEEEEEEeeeeEe-------------ccccc------------HHHHHHHHHHHHhhCcCcEEEEcC--------
Confidence 344678888877777743 22222 247799999999999999998731
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCC---CHHHHHHHHHhCC-ceE
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNP---TPKELEGIIQRNG-NFT 251 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~p---s~eE~~~~i~~~g-~f~ 251 (329)
+ -|+.-..+-+-+-.-+. .|++ .++....++-+.+ +|+
T Consensus 210 --Q-----pWksY~kaar~~e~~~~-----ny~~i~lkp~~f~~~l~q~~vgle 251 (288)
T KOG2899|consen 210 --Q-----PWKSYKKAARRSEKLAA-----NYFKIFLKPEDFEDWLNQIVVGLE 251 (288)
T ss_pred --C-----chHHHHHHHHHHHHhhc-----CccceecCHHHHHhhhhhhhhhee
Confidence 1 24444444333311121 5554 7888888876652 454
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.80 E-value=0.036 Score=53.33 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=43.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|+.+.+ + ..+|+..|.........-++.. -.+--|..| ++.+-
T Consensus 174 ~~~VLDl~cG~G~~sl~la~--------~---------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~---D~~~~ 233 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT--------P---------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQAL---DSTQF 233 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh--------c---------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc---CHHHH
Confidence 47899999999999988864 1 1479999998776655433321 112235554 34222
Q ss_pred cC-CCCceeEEEec
Q 037735 120 LF-PKSSLHFVHSS 132 (329)
Q Consensus 120 lf-p~~s~dl~~Ss 132 (329)
+. +.+.+|+++..
T Consensus 234 ~~~~~~~~D~Vv~d 247 (315)
T PRK03522 234 ATAQGEVPDLVLVN 247 (315)
T ss_pred HHhcCCCCeEEEEC
Confidence 21 34568888865
No 165
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.065 Score=47.90 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=79.3
Q ss_pred HhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC
Q 037735 23 ILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP 102 (329)
Q Consensus 23 ~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~ 102 (329)
.+++.|++...++.. ..+.-.+|+|||||--|-.+.+.+ .|....+..|+-.--.+.-.++..
T Consensus 27 lLlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i--------------~~~~~~latDiNp~A~~~Tl~TA~ 89 (209)
T KOG3191|consen 27 LLLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVI--------------GPQALYLATDINPEALEATLETAR 89 (209)
T ss_pred HHHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhc--------------CCCceEEEecCCHHHHHHHHHHHH
Confidence 356667777666532 236677999999999999998755 345677888884322221111110
Q ss_pred CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcH-----HHHHHHH--HHHhhcHHHH
Q 037735 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVN-----EVMEAYA--AQFNNDFQTF 175 (329)
Q Consensus 103 ~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~-----~~~~ay~--~q~~~D~~~F 175 (329)
.. .+-+--|-.|+..-|-+ +++|+.+=+ +| |...++. ....||+ +--+.=..+|
T Consensus 90 ~n-~~~~~~V~tdl~~~l~~-~~VDvLvfN--------PP---------YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~l 150 (209)
T KOG3191|consen 90 CN-RVHIDVVRTDLLSGLRN-ESVDVLVFN--------PP---------YVPTSDEEIGDEGIASAWAGGKDGREVTDRL 150 (209)
T ss_pred hc-CCccceeehhHHhhhcc-CCccEEEEC--------CC---------cCcCCcccchhHHHHHHHhcCcchHHHHHHH
Confidence 00 00011122245444444 777776533 22 1111111 1234444 3334446688
Q ss_pred HHHHHHHhccCceEEEEecccCC
Q 037735 176 LNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 176 L~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
|..--.-|.|.|++++.+.-++.
T Consensus 151 l~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 151 LPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred HhhhhhhcCcCceEEeeehhhcC
Confidence 99999999999999998866554
No 166
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.57 E-value=0.094 Score=49.73 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=69.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCCcceeee--ccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQSRSYYAA--GVPGS 115 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~~~~f~~--gvpgs 115 (329)
...|+|+|||||.-|+.++..+ |.-.++..|...---.-.-.+ +.. .+.+. -.-++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---------------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g--~i~v~~~~me~d 211 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---------------PQCTVTAIDVSKAAIKLAKENAQRLKLSG--RIEVIHNIMESD 211 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---------------CCceEEEEeccHHHHHHHHHHHHHHhhcC--ceEEEecccccc
Confidence 3479999999999999998643 345788888763221111111 111 11110 01134
Q ss_pred ccccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh--------hcHHHHHHHHHHHhccC
Q 037735 116 FYSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN--------NDFQTFLNTRAQELVPG 186 (329)
Q Consensus 116 Fy~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~--------~D~~~FL~~ra~eL~pG 186 (329)
.|... .+.+.+|+++|+=-.=-=. | |.+ ..|+|. .|..-.+ .-+..|+.-..+-|+||
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~d-----D-~~~------l~~eV~-~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKD-----D-NRQ------LKPEVR-LYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred cccccccccCceeEEecCCCccccc-----c-hhh------cCchhe-ecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 44444 6788899998862111100 1 110 011110 0000000 01347788889999999
Q ss_pred ceEEEEecccCCC
Q 037735 187 GLAALVMFSVPDG 199 (329)
Q Consensus 187 G~l~~~~~g~~~~ 199 (329)
|.+.|.+.+++..
T Consensus 279 g~~~le~~~~~~~ 291 (328)
T KOG2904|consen 279 GFEQLELVERKEH 291 (328)
T ss_pred CeEEEEecccccC
Confidence 9999999988654
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.49 E-value=0.026 Score=57.11 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=69.8
Q ss_pred HHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 12 SNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 12 ~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
++...|+++..++.+.....-. ..+..+|+|+|||+|+++...++..-.. .-..+||.-.--.
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~------~~~~~vVldVGAGrGpL~~~al~A~~~~-----------~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSY------SSKDKVVLDVGAGRGPLSMFALQAGARA-----------GGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-S------EETT-EEEEES-TTSHHHHHHHHTTHHH-----------CCESEEEEEESST
T ss_pred HHHHHHHHHHHHHHhhhhhccc------cccceEEEEeCCCccHHHHHHHHHHHHh-----------CCCeEEEEEcCCH
Confidence 4455666665555555542100 1135789999999999998887633111 1125788877655
Q ss_pred chHHhhhhcC--CC--CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 92 NDFNTLFKSL--PQ--SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 92 ndfn~lf~~l--~~--~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
|-.-++-+.+ .. ..-.. +.|+. +.+-++..+|+++|= ||=..-. ....|
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~v---i~~d~-r~v~lpekvDIIVSE----lLGsfg~----------nEl~p--------- 277 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTV---IHGDM-REVELPEKVDIIVSE----LLGSFGD----------NELSP--------- 277 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEE---EES-T-TTSCHSS-EEEEEE-------BTTBT----------TTSHH---------
T ss_pred hHHHHHHHHHHhcCCCCeEEE---EeCcc-cCCCCCCceeEEEEe----ccCCccc----------cccCH---------
Confidence 5554442221 11 12222 33455 666666789999994 4322111 11222
Q ss_pred HhhcHHHHHHHHHHHhccCceEE
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
..|..|-+-|+|||.++
T Consensus 278 ------E~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 278 ------ECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ------HHHHHGGGGEEEEEEEE
T ss_pred ------HHHHHHHhhcCCCCEEe
Confidence 33788889999999875
No 168
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.48 E-value=0.1 Score=48.16 Aligned_cols=39 Identities=31% Similarity=0.244 Sum_probs=30.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
+..+++|+|||||.+|..+++ + .. -+|+.-|...++...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~--------~-------ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQ--------K-------GA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHH--------c-------CC-CEEEEEeCCHHHHHH
Confidence 446899999999999998875 1 11 379999999877665
No 169
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.34 E-value=0.083 Score=41.27 Aligned_cols=103 Identities=21% Similarity=0.214 Sum_probs=61.1
Q ss_pred EEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCcc-ceEEecCCCcchHHhhhhcCCCCc---ceeeecccccccc--c
Q 037735 46 IADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIE-FQVFFNDHSDNDFNTLFKSLPQSR---SYYAAGVPGSFYS--S 119 (329)
Q Consensus 46 IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe-~~v~~nDLp~ndfn~lf~~l~~~~---~~f~~gvpgsFy~--~ 119 (329)
++|+|||+|..+ .+.. . .++ .+++..|................. ..+..+ +... .
T Consensus 52 ~ld~~~g~g~~~-~~~~-~--------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLAR-L--------------GGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVA---DALGGVL 112 (257)
T ss_pred eEEecCCcCHHH-HHHH-h--------------CCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEe---ccccCCC
Confidence 999999999988 2211 1 111 356666776544443211111010 122222 2333 2
Q ss_pred cCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 LFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-+++ ..+|++.+...+||.. + ...+....+.|+|||.+++.......
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~~--~------------------------------~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLLP--P------------------------------AKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CCCCCCceeEEeeeeehhcCC--H------------------------------HHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 2444 4899996666666654 1 26688999999999999999987665
Q ss_pred C
Q 037735 199 G 199 (329)
Q Consensus 199 ~ 199 (329)
.
T Consensus 161 ~ 161 (257)
T COG0500 161 L 161 (257)
T ss_pred C
Confidence 3
No 170
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.32 E-value=0.036 Score=50.10 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=38.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..++.+++ + .. .+|++.|.-..-...+-+++.. .+.-+..+ ++.+-
T Consensus 54 ~~~vLDl~~GsG~l~l~~ls--------r-------~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~---D~~~~ 114 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALS--------R-------YA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNT---NALSF 114 (199)
T ss_pred CCEEEEcCCCccHHHHHHHH--------c-------CC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc---hHHHH
Confidence 35899999999999987654 1 11 3688878754333333333211 11123333 44332
Q ss_pred cC-CCCceeEEEe
Q 037735 120 LF-PKSSLHFVHS 131 (329)
Q Consensus 120 lf-p~~s~dl~~S 131 (329)
+. +..++|+|++
T Consensus 115 l~~~~~~fDlV~~ 127 (199)
T PRK10909 115 LAQPGTPHNVVFV 127 (199)
T ss_pred HhhcCCCceEEEE
Confidence 21 2346888875
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.31 E-value=0.017 Score=53.68 Aligned_cols=74 Identities=16% Similarity=0.042 Sum_probs=43.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..|..+.+ + .+ +++.-|.-......+-..+....+ .++. +++.+-.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~--------~-------~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~---~D~~~~~ 88 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK--------R-------AK--KVTAIEIDPRLAEILRKLLSLYERLEVIE---GDALKVD 88 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH--------h-------CC--cEEEEECCHHHHHHHHHHhCcCCcEEEEE---CchhcCC
Confidence 457899999999999999975 2 12 477777765554444333321112 2233 3554333
Q ss_pred CCCCcee---EEEeccceec
Q 037735 121 FPKSSLH---FVHSSYTLHW 137 (329)
Q Consensus 121 fp~~s~d---l~~Ss~alhW 137 (329)
++ ++| +++|+...|+
T Consensus 89 ~~--~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 89 LP--DFPKQLKVVSNLPYNI 106 (253)
T ss_pred hh--HcCCcceEEEcCChhh
Confidence 33 455 7777766665
No 172
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.14 E-value=0.072 Score=51.82 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~ 119 (329)
-.-..|+|.|||+|.+|+..++.= -..||...- +||-...-+.+.... .--+.-+||-..+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC----------------cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc
Confidence 345678999999999999887511 135665553 456554444333210 11234478888444
Q ss_pred cCCCCceeEEEeccceecccCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
-+| +.+|+++|- |-. -.| ++=++++|.+| +-|+|.|.|+ -++|+=
T Consensus 239 eLP-Ek~DviISE---------PMG~mL~N---------------------ERMLEsYl~Ar-k~l~P~GkMf-PT~gdi 285 (517)
T KOG1500|consen 239 ELP-EKVDVIISE---------PMGYMLVN---------------------ERMLESYLHAR-KWLKPNGKMF-PTVGDI 285 (517)
T ss_pred cCc-hhccEEEec---------cchhhhhh---------------------HHHHHHHHHHH-hhcCCCCccc-Ccccce
Confidence 455 669999872 433 012 23466889999 9999999986 445655
Q ss_pred CCCcc
Q 037735 198 DGIPL 202 (329)
Q Consensus 198 ~~~~~ 202 (329)
...|.
T Consensus 286 HlAPF 290 (517)
T KOG1500|consen 286 HLAPF 290 (517)
T ss_pred eeccc
Confidence 55454
No 173
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.94 E-value=0.037 Score=50.22 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=62.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~-~~~~f~~gvpgsFy 117 (329)
++.+|+|+||++|.-|+.+...+ ++..+|+--|.-....... |+..+- .+--+..|.+..+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l--------------~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL--------------PEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL 110 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS--------------TTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred CCceEEEeccccccHHHHHHHhh--------------cccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence 56899999999999999988633 2335788888754322221 222121 12335666555665
Q ss_pred cccCCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+|.+. +.+||||-=. . | .+...+|....+-|+|||.+++-..
T Consensus 111 ~~l~~~~~~~~fD~VFiDa--------~-----K---------------------~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA--------D-----K---------------------RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES--------T-----G---------------------GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred HHHHhccCCCceeEEEEcc--------c-----c---------------------cchhhHHHHHhhhccCCeEEEEccc
Confidence 666554 4688887422 1 1 1223445555679999999998654
No 174
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=94.92 E-value=0.1 Score=52.31 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=42.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|+.+.+.. ..|+..|.........-+++.. ..--|+.| ++.+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~-----------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~---d~~~ 351 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA-----------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAG---TLET 351 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC-----------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeC---CHHH
Confidence 34689999999999999886411 2688899876666554443311 11234544 3422
Q ss_pred ---cc-CCCCceeEEE
Q 037735 119 ---SL-FPKSSLHFVH 130 (329)
Q Consensus 119 ---~l-fp~~s~dl~~ 130 (329)
.+ +.++++|+++
T Consensus 352 ~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLL 367 (431)
T ss_pred HHHHHHhcCCCCCEEE
Confidence 11 3345788877
No 175
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.80 E-value=0.062 Score=49.34 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcce-eeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSY-YAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~-f~~gvpgsF 116 (329)
.++-+|+|+|.+.|.-|+.+...+ +.+.+++-.|.........-+++. -...+ .+.| |+.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l--------------~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~--gda 121 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL--------------PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG--GDA 121 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC--------------CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec--CcH
Confidence 467899999999999998887643 225689999987765554444432 22222 2232 344
Q ss_pred cccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-+.| +..+++||+|= ... +.+...||...-+-|+|||++++=..
T Consensus 122 l~~l~~~~~~~fDliFI----------Dad------------------------K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 122 LDVLSRLLDGSFDLVFI----------DAD------------------------KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHHhccCCCccEEEE----------eCC------------------------hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 3333 46788888873 111 11223677777788999999998665
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
-
T Consensus 168 l 168 (219)
T COG4122 168 L 168 (219)
T ss_pred c
Confidence 3
No 176
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.76 E-value=0.48 Score=44.79 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=79.6
Q ss_pred hHhhHHHHHhhcccCCCCCceEEEeeeCC--CCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---h
Q 037735 24 LRYDPRTAVTDLGTNAVPNTFRIADFGCS--TGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---F 98 (329)
Q Consensus 24 ~~~~l~~ai~~i~~~~~~~~~~IaDlGCs--tG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f 98 (329)
....|..+++.+.. ..+....+||||| |-.|+-.+.+.+ .|+..|++.|- |=-.+ -
T Consensus 52 nR~Fl~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~--------------~P~aRVVYVD~---DPvv~ah~r 112 (267)
T PF04672_consen 52 NRAFLRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRV--------------APDARVVYVDN---DPVVLAHAR 112 (267)
T ss_dssp HHHHHHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH---------------TT-EEEEEES---SHHHHHCCH
T ss_pred HHHHHHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhh--------------CCCceEEEECC---CchHHHHHH
Confidence 34444555554321 2256779999999 445666666544 57788988884 42221 1
Q ss_pred hcCCCCc---ceeeecccc---cccc-----ccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 99 KSLPQSR---SYYAAGVPG---SFYS-----SLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 99 ~~l~~~~---~~f~~gvpg---sFy~-----~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
..|.... .-|+.|.-. +..+ +++ .+.-+ -+.-...|||+.+-.
T Consensus 113 alL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~------------------------ 167 (267)
T PF04672_consen 113 ALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDD------------------------ 167 (267)
T ss_dssp HHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGC------------------------
T ss_pred hhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCcc------------------------
Confidence 1122211 334444222 1111 222 22323 244566789986532
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHh
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQR 246 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~ 246 (329)
|-...++.-...|.||.+|+++-...+.. +. ..+.+...+.+ .|. ..+.+|.+|+.+.+.
T Consensus 168 ----dp~~iv~~l~d~lapGS~L~ish~t~d~~-p~-------~~~~~~~~~~~---~~~----~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 168 ----DPAGIVARLRDALAPGSYLAISHATDDGA-PE-------RAEALEAVYAQ---AGS----PGRPRSREEIAAFFD- 227 (267)
T ss_dssp ----THHHHHHHHHCCS-TT-EEEEEEEB-TTS-HH-------HHHHHHHHHHH---CCS--------B-HHHHHHCCT-
T ss_pred ----CHHHHHHHHHHhCCCCceEEEEecCCCCC-HH-------HHHHHHHHHHc---CCC----CceecCHHHHHHHcC-
Confidence 33466777788999999999999976532 10 11233333322 121 178899999999876
Q ss_pred CCceEEeEEEEeecC-cc
Q 037735 247 NGNFTIERMEKMTNP-KQ 263 (329)
Q Consensus 247 ~g~f~i~~~e~~~~~-~~ 263 (329)
+|++..=-....+ |-
T Consensus 228 --g~elvePGlv~~~~Wr 243 (267)
T PF04672_consen 228 --GLELVEPGLVPVPRWR 243 (267)
T ss_dssp --TSEE-TT-SEEGGGSS
T ss_pred --CCccCCCceecccccC
Confidence 5887654433333 54
No 177
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.75 E-value=0.081 Score=49.73 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=67.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+++|+|.|.|.-|..+.... -+|+..+....|=..|-+. .|=+..+ -+..+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-----------------~~v~aTE~S~~Mr~rL~~k-----g~~vl~~-~~w~~--- 147 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-----------------KEVYATEASPPMRWRLSKK-----GFTVLDI-DDWQQ--- 147 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-----------------ceEEeecCCHHHHHHHHhC-----CCeEEeh-hhhhc---
Confidence 56789999999999999986422 2588888887775555331 1111110 01111
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
-+..+|+|.+.+-|-=+.++- +.|+...+.|+|+|++++++.=
T Consensus 148 ~~~~fDvIscLNvLDRc~~P~-------------------------------~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 148 TDFKFDVISCLNVLDRCDRPL-------------------------------TLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred cCCceEEEeehhhhhccCCHH-------------------------------HHHHHHHHHhCCCCEEEEEEEe
Confidence 124699999888887766532 7799999999999999999863
No 178
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.26 Score=46.18 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=68.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh-hhcCCC----Ccceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL-FKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l-f~~l~~----~~~~f~~gvpgsF 116 (329)
+-.+|+|.|.|||..|..+...+ .|+-+|+--|.-. ||-.. .+++.. ++..+.. |+.
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~v--------------g~~G~v~tyE~r~-d~~k~A~~Nl~~~~l~d~v~~~~---~Dv 155 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAV--------------GPEGHVTTYEIRE-DFAKTARENLSEFGLGDRVTLKL---GDV 155 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhh--------------CCCceEEEEEecH-HHHHHHHHHHHHhccccceEEEe---ccc
Confidence 45799999999999999998644 4556788888764 55443 333321 1122233 567
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-.++. .+|.++- ++|.+ | +.+...+..|+|||.+++-++.
T Consensus 156 ~~~~~~~-~vDav~L--------Dmp~P-W---------------------------~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 156 REGIDEE-DVDAVFL--------DLPDP-W---------------------------NVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccccccc-ccCEEEE--------cCCCh-H---------------------------HHHHHHHHHhCCCcEEEEEcCC
Confidence 7777776 7888763 45643 3 5599999999999998887744
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.56 E-value=0.13 Score=52.40 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=75.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cce-eeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSY-YAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~-f~~gvpgsFy~ 118 (329)
...+|+|++||.|.=|..+.+.+ ..+-.|+.||...+-...+-.++... .++ .....+..+ .
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l--------------~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~ 177 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALM--------------NNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-G 177 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-h
Confidence 45789999999999999987632 12247999999877777766555321 222 223333322 2
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..+| +.+|.|. -|+||+ . +-|. .+...-++..+.+.-..| ..+|..-++-|+|||.|+-+|.
T Consensus 178 ~~~~-~~fD~IL--------vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ-----~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 178 AALP-ETFDAIL--------LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQ-----RELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred hhch-hhcCeEE--------EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHH-----HHHHHHHHHHcCCCcEEEEECC
Confidence 2233 4567665 345665 1 1111 011111333344433344 3789999999999999999997
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
.-
T Consensus 244 T~ 245 (470)
T PRK11933 244 TL 245 (470)
T ss_pred CC
Confidence 63
No 180
>PLN02476 O-methyltransferase
Probab=94.45 E-value=0.13 Score=48.90 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcch
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDND 93 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~nd 93 (329)
.++-+|+|+||++|.-|+.+...+ .+..+++--|.....
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al--------------~~~G~V~TiE~d~e~ 155 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVL--------------PESGCLVACERDSNS 155 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHH
Confidence 357899999999999999887532 234568888876533
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.19 E-value=0.026 Score=53.98 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=47.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccc-eeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRS-YYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~-~f~~gvpgsFy 117 (329)
...+|+|+|||+|..|..++... .+|+.-|+-......+-+.+.. ..+ -++. +++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~-----------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~---~Dal 95 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA-----------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE---GDAL 95 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC-----------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---CCHh
Confidence 34689999999999999887511 2578888776555554433321 111 2333 3564
Q ss_pred cccCCCCceeEEEeccceeccc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs 139 (329)
+.-++ .+|.++++.-.+|-+
T Consensus 96 ~~~~~--~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 96 KTEFP--YFDVCVANVPYQISS 115 (294)
T ss_pred hhccc--ccCEEEecCCcccCc
Confidence 43333 578888887777644
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.18 E-value=0.19 Score=46.95 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
.++.+|+|+|+++|.-|+.+...+ +++.+++--|...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al--------------~~~g~v~tiE~~~ 114 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALAL--------------PEDGKILAMDINR 114 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhC--------------CCCCEEEEEeCCH
Confidence 357899999999999998887532 3346788888764
No 183
>PLN02823 spermine synthase
Probab=93.83 E-value=0.23 Score=48.55 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+||.+|+|.|.....+++ . .+.-++...|+-.......-+.++ +.+--.+.+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~--------~-------~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLR--------H-------KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHh--------C-------CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 4678999999999987776653 1 122367888886554443333332 11223445554
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHH-HHHHHhccCceEEEE
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLN-TRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~-~ra~eL~pGG~l~~~ 192 (329)
..|-++ .++++|+|+.-.+=.|-. .++ ..-|.. .|++ ...+-|+|||++++.
T Consensus 167 ~~~L~~--~~~~yDvIi~D~~dp~~~----------------~~~--~~Lyt~-------eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 167 RAELEK--RDEKFDVIIGDLADPVEG----------------GPC--YQLYTK-------SFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHhh--CCCCccEEEecCCCcccc----------------Ccc--hhhccH-------HHHHHHHHHhcCCCcEEEEe
Confidence 455433 356788888764311210 000 112222 6777 778999999998875
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 220 ~ 220 (336)
T PLN02823 220 A 220 (336)
T ss_pred c
Confidence 4
No 184
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=93.59 E-value=0.11 Score=50.51 Aligned_cols=76 Identities=5% Similarity=0.039 Sum_probs=46.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cce--eeeccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSY--YAAGVPGS 115 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~--f~~gvpgs 115 (329)
...+|+|+|||+|.....+.. + .+..+++..|+-..-....-+++.. . ..+ .....+++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~--------~-------~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGV--------H-------EYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHh--------h-------CCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 468999999999976666643 2 2336899999865444443333211 1 111 22334455
Q ss_pred ccccc-CCCCceeEEEec
Q 037735 116 FYSSL-FPKSSLHFVHSS 132 (329)
Q Consensus 116 Fy~~l-fp~~s~dl~~Ss 132 (329)
++..+ .+.+.+|+++|+
T Consensus 179 i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 179 IFKGIIHKNERFDATLCN 196 (321)
T ss_pred hhhcccccCCceEEEEeC
Confidence 55444 477899999987
No 185
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=93.56 E-value=0.6 Score=48.05 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
...+|+|.|||+|.+...++..+.. . ......+..++..|.-..-...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~---~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I---NYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c---CCcccceeeeeeechhHHHHHH
Confidence 5679999999999998888765421 0 0001134678888886544333
No 186
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.24 E-value=2.1 Score=40.55 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=58.1
Q ss_pred eccccccccccCCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 037735 110 AGVPGSFYSSLFPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG 186 (329)
Q Consensus 110 ~gvpgsFy~~lfp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG 186 (329)
..+.|+|.+---++ ++.|.|++.+=+- . ++++-.+|....+-|+||
T Consensus 147 sm~aGDF~e~y~~~~~~~~~d~VvT~FFID----T---------------------------A~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 147 SMCAGDFLEVYGPDENKGSFDVVVTCFFID----T---------------------------AENIIEYIETIEHLLKPG 195 (270)
T ss_pred eEecCccEEecCCcccCCcccEEEEEEEee----c---------------------------hHHHHHHHHHHHHHhccC
Confidence 34557885444444 5888888874322 1 235568899999999999
Q ss_pred ceEEEEecccCCCCcccCCcccchHHHHHHHHHHH--HhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 187 GLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVEL--TKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 187 G~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l--~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
| +...+||=--.. .++ ..+. ---.|.||++.+++.- ||++++-+.
T Consensus 196 G--~WIN~GPLlyh~-----------------~~~~~~~~~------sveLs~eEi~~l~~~~-GF~~~~~~~ 242 (270)
T PF07942_consen 196 G--YWINFGPLLYHF-----------------EPMSIPNEM------SVELSLEEIKELIEKL-GFEIEKEES 242 (270)
T ss_pred C--EEEecCCccccC-----------------CCCCCCCCc------ccCCCHHHHHHHHHHC-CCEEEEEEE
Confidence 9 556666532110 001 0011 2236899999999998 599988776
No 187
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.21 E-value=1.2 Score=42.09 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhhcCCCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFKSLPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~~l~~~~~~f~~gvpgsFy 117 (329)
-.|.+|+|+|||.|.-+..+.+ .++. . .+++.-|....+-+- +++..+...... ....++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~--------~~~~-----~-~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~---~~~~~~ 94 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAARE--------VWPS-----L-KEYTCVDRSPEMLELAKRLLRAGPNNRNAE---WRRVLY 94 (274)
T ss_pred CCCceEEEecCChHHHHHHHHH--------HhcC-----c-eeeeeecCCHHHHHHHHHHHhcccccccch---hhhhhh
Confidence 4678999999999975443322 2321 1 367888876555332 233222211100 112233
Q ss_pred cccCCCCceeEEEeccceeccc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs 139 (329)
....+-..-||++++++|-=|.
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL~ 116 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNELP 116 (274)
T ss_pred cccccCCCCcEEEEehhhhcCC
Confidence 2222222339999999986543
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=93.07 E-value=0.26 Score=48.99 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=47.0
Q ss_pred CCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEE
Q 037735 6 GAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVF 85 (329)
Q Consensus 6 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~ 85 (329)
+.-.|+-|...-+.+...+...+.. ..+..+|+|++||+|..++.+.... .. ..|+
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~---------~~~~~~vLDl~aGsG~~~l~~a~~~--------------~~-~~V~ 85 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGP---------KLPRESVLDALSASGIRGIRYALET--------------GV-EKVT 85 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHh---------hcCCCEEEECCCcccHHHHHHHHHC--------------CC-CEEE
Confidence 4567888877777666665555431 1123689999999999999987521 11 3799
Q ss_pred ecCCCcchHHhhhhc
Q 037735 86 FNDHSDNDFNTLFKS 100 (329)
Q Consensus 86 ~nDLp~ndfn~lf~~ 100 (329)
.+|.-.+-...+-++
T Consensus 86 a~Din~~Av~~a~~N 100 (382)
T PRK04338 86 LNDINPDAVELIKKN 100 (382)
T ss_pred EEeCCHHHHHHHHHH
Confidence 999976554444433
No 189
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=92.38 E-value=0.62 Score=43.60 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh-hcC---CCCcce-eeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF-KSL---PQSRSY-YAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf-~~l---~~~~~~-f~~gvpgsF 116 (329)
.-.+|+|-|.|+|..|..+...+ .|.-.|+--|.-. ||-... +++ .-..++ +.. ++.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v--------------~p~G~v~t~E~~~-~~~~~A~~n~~~~gl~~~v~~~~---~Dv 101 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAV--------------GPTGHVYTYEFRE-DRAEKARKNFERHGLDDNVTVHH---RDV 101 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHH--------------TTTSEEEEEESSH-HHHHHHHHHHHHTTCCTTEEEEE---S-G
T ss_pred CCCEEEEecCCcHHHHHHHHHHh--------------CCCeEEEccccCH-HHHHHHHHHHHHcCCCCCceeEe---cce
Confidence 34799999999999999998765 4555777777653 443322 121 111111 222 234
Q ss_pred ccccCC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh-ccCceEEEE
Q 037735 117 YSSLFP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL-VPGGLAALV 192 (329)
Q Consensus 117 y~~lfp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL-~pGG~l~~~ 192 (329)
++--|+ ++.+|.+|- |+|.+ | ..+..-.+.| +|||.+++-
T Consensus 102 ~~~g~~~~~~~~~DavfL--------Dlp~P-w---------------------------~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL--------DLPDP-W---------------------------EAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp GCG--STT-TTSEEEEEE--------ESSSG-G---------------------------GGHHHHHHHE-EEEEEEEEE
T ss_pred ecccccccccCcccEEEE--------eCCCH-H---------------------------HHHHHHHHHHhcCCceEEEE
Confidence 333332 356777763 46644 3 2278888999 999998887
Q ss_pred ecc
Q 037735 193 MFS 195 (329)
Q Consensus 193 ~~g 195 (329)
.++
T Consensus 146 sP~ 148 (247)
T PF08704_consen 146 SPC 148 (247)
T ss_dssp ESS
T ss_pred CCC
Confidence 754
No 190
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.09 E-value=0.9 Score=42.25 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=85.9
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-----cceeeecccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-----RSYYAAGVPG 114 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-----~~~f~~gvpg 114 (329)
..+-.+++|+|+|||.+|.-+++ + .. -.||.-|.-.|..--=++.-|.- .+. =...|.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq--------~-------gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~-r~l~~~ 139 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQ--------R-------GA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNV-RYLTPE 139 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHH--------c-------CC-cEEEEEEccCCccCHhHhcCCcEEEEecCCh-hhCCHH
Confidence 45668899999999999999986 2 11 37999998876544434333310 011 011233
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.|.+ -+||+++--++== +...|..-...++|||-+++-+
T Consensus 140 ~~~~------~~d~~v~DvSFIS----------------------------------L~~iLp~l~~l~~~~~~~v~Lv- 178 (245)
T COG1189 140 DFTE------KPDLIVIDVSFIS----------------------------------LKLILPALLLLLKDGGDLVLLV- 178 (245)
T ss_pred Hccc------CCCeEEEEeehhh----------------------------------HHHHHHHHHHhcCCCceEEEEe-
Confidence 4433 3456555433322 2355888889999999877665
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.+. |+.= ++.+ ..|++...+..-+..+++....... +|.+..+...
T Consensus 179 -KPQ------------FEag----r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~-g~~~~gl~~S 225 (245)
T COG1189 179 -KPQ------------FEAG----REQVGKKGVVRDPKLHAEVLSKIENFAKEL-GFQVKGLIKS 225 (245)
T ss_pred -cch------------hhhh----hhhcCcCceecCcchHHHHHHHHHHHHhhc-CcEEeeeEcc
Confidence 221 1111 2333 4566666655556677888877777 5988877643
No 191
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.72 E-value=0.26 Score=46.34 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=55.4
Q ss_pred ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccC
Q 037735 125 SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVN 204 (329)
Q Consensus 125 s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~ 204 (329)
..|.++|+++|.=.++-+ + .+.+-+++-+.-|+|||.|++......+....++
T Consensus 158 ~~D~v~s~fcLE~a~~d~-------------------~--------~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~ 210 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDL-------------------D--------EYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG 210 (256)
T ss_dssp SEEEEEEESSHHHH-SSH-------------------H--------HHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT
T ss_pred chhhhhhhHHHHHHcCCH-------------------H--------HHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC
Confidence 599999999998876533 1 2345588889999999999999876554322110
Q ss_pred CcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 205 NAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 205 ~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
..+. ...-+.+.++++|+++ +|+|...+.
T Consensus 211 ---~~F~--------------------~l~l~ee~v~~al~~a-G~~i~~~~~ 239 (256)
T PF01234_consen 211 ---HKFP--------------------CLPLNEEFVREALEEA-GFDIEDLEK 239 (256)
T ss_dssp ---EEEE-----------------------B-HHHHHHHHHHT-TEEEEEEEG
T ss_pred ---Eecc--------------------cccCCHHHHHHHHHHc-CCEEEeccc
Confidence 0000 3335889999999999 599998883
No 192
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=91.04 E-value=1.3 Score=40.15 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=14.7
Q ss_pred hcHHHHHHHHHHHhccCceEE
Q 037735 170 NDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~ 190 (329)
.|+..-|..+..+|++|-+++
T Consensus 135 ~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEE
T ss_pred HHHHHHHHHHHhcCCCCCEEE
Confidence 456677889999999887754
No 193
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.93 E-value=0.48 Score=40.01 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=36.5
Q ss_pred HHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 22 YILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 22 ~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
+++..+|...++... ....+.+|+|+|||.|++|+.+...+ ... .+..+|+.-|.-.
T Consensus 7 ~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~~l--------~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAHLL--------CNS---SPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHHHH--------Hhc---CCCCeEEEEECCc
Confidence 445555555443311 13567899999999999999997522 111 2457888888753
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=90.22 E-value=1.9 Score=40.90 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc--CCCC-cc--eeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS--LPQS-RS--YYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~--l~~~-~~--~f~~gvpgs 115 (329)
....+|+|-.||+|.+-..++..+.+.- .. .++.+++..|+-.........+ +... .. .... ++
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~-~~-------~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~---~d 113 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKR-NK-------IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ---GD 113 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCH-HH-------HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE---S-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccc-cc-------cccceeEeecCcHHHHHHHHhhhhhhccccccccccc---cc
Confidence 4457899999999998877776443221 11 2457899999854433221111 1110 11 1222 23
Q ss_pred cccc-cCC-CCceeEEEec--ccee-cccCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 116 FYSS-LFP-KSSLHFVHSS--YTLH-WLSKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 116 Fy~~-lfp-~~s~dl~~Ss--~alh-WLs~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
.+.. ... ...+|+|+++ +... |-...... .|.++ ..... ..|+ .|+...-+-|++||+
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~-~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY--FPPKS------------NAEY-AFIEHALSLLKPGGR 178 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC--SSSTT------------EHHH-HHHHHHHHTEEEEEE
T ss_pred cccccccccccccccccCCCCcccccccccccccccccccc--CCCcc------------chhh-hhHHHHHhhcccccc
Confidence 3333 333 5789999987 2222 41111000 02111 00011 1122 489999999999999
Q ss_pred EEEEec
Q 037735 189 AALVMF 194 (329)
Q Consensus 189 l~~~~~ 194 (329)
+++.++
T Consensus 179 ~~~Ilp 184 (311)
T PF02384_consen 179 AAIILP 184 (311)
T ss_dssp EEEEEE
T ss_pred eeEEec
Confidence 999886
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=1.5 Score=40.26 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=16.3
Q ss_pred ceEEEeeeCCCCcccHHHH
Q 037735 43 TFRIADFGCSTGPNTFIAV 61 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~ 61 (329)
-.+.||+|.|||.+|-.+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFA 101 (237)
T ss_pred CcceeecCCCccHHHHHHH
Confidence 4778999999999997765
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=89.29 E-value=0.79 Score=43.20 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=39.8
Q ss_pred ceEEEeeeCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh
Q 037735 43 TFRIADFGCSTGPNTFIAVQ------------NIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF 98 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~------------~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf 98 (329)
.-+|+|+|+|.|.+|..+++ .++..++++.. ....++|+..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhc
Confidence 57899999999999999994 45566666543 134588999998888888643
No 197
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.86 E-value=0.2 Score=41.10 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=32.0
Q ss_pred eeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 126 LHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 126 ~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+|+|.+.+..-|.. .... ..-+.+||+..++-|+|||.|++--
T Consensus 2 yDvilclSVtkWIH-------------Ln~G------------D~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKWIH-------------LNWG------------DEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp EEEEEEES-HHHHH-------------HHHH------------HHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred ccEEEEEEeeEEEE-------------ecCc------------CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 68999999988942 2222 2346799999999999999999854
No 198
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=87.16 E-value=6.9 Score=38.45 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=79.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~-~f~~gvpgsFy~ 118 (329)
...+|+|+=++-|.=|.++.... . .....|+.+|....=...+..++... .+ ..+..+ ++.+.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~--------~-----~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d-~~~~~ 221 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELM--------E-----NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKD-ARRLA 221 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhc--------C-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecc-ccccc
Confidence 34899999999999999988633 1 11246799999887777776665321 22 122222 22223
Q ss_pred ccCCCC-ceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKS-SLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~-s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
...+.. .+|-|. =+.||+ . +.+. .+....++..+.+.-.-|. ++|..-.+-|+|||.|+-+|
T Consensus 222 ~~~~~~~~fD~iL--------lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~-----~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 222 ELLPGGEKFDRIL--------LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK-----EILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ccccccCcCcEEE--------ECCCCCCCcccccCccccccCCHHHHHHHHHHHH-----HHHHHHHHhcCCCCEEEEEc
Confidence 333333 366663 467777 1 2111 2333334444544444453 78999999999999999999
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
....
T Consensus 289 CS~~ 292 (355)
T COG0144 289 CSLT 292 (355)
T ss_pred cCCc
Confidence 8754
No 199
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=87.08 E-value=1.2 Score=44.02 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh--hh-----cCCCCcceeeecccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL--FK-----SLPQSRSYYAAGVPGSF 116 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l--f~-----~l~~~~~~f~~gvpgsF 116 (329)
..++|+||+-|+-+...-. ++. .+++-.|. |.+.-. .. .+.. ..-++. +.|
T Consensus 112 ~~~~~~~~g~~~~~~~i~~---------f~~-------~~~~Gl~~--n~~e~~~~~~~~~~~~l~~-k~~~~~---~~~ 169 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAV---------FKK-------AGVVGLDN--NAYEAFRANELAKKAYLDN-KCNFVV---ADF 169 (364)
T ss_pred ccccccCcCcCchhHHHHH---------hcc-------CCccCCCc--CHHHHHHHHHHHHHHHhhh-hcceeh---hhh
Confidence 4789999999998877632 111 23444444 333221 11 1111 112333 468
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
-..+|+++.+|++.+.-+.+..++. ...+++-.++++|||+.+.--+.+
T Consensus 170 ~~~~fedn~fd~v~~ld~~~~~~~~-------------------------------~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 170 GKMPFEDNTFDGVRFLEVVCHAPDL-------------------------------EKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred hcCCCCccccCcEEEEeecccCCcH-------------------------------HHHHHHHhcccCCCceEEeHHHHH
Confidence 7888999999999999998885532 355777788899999998877654
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
.
T Consensus 219 ~ 219 (364)
T KOG1269|consen 219 T 219 (364)
T ss_pred h
Confidence 3
No 200
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.69 E-value=0.36 Score=43.45 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=26.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
+..+|+|+|||||.+++...- + .| -.|+.-|+-......
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~---------l------Ga-~~V~~vdiD~~a~ei 83 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL---------L------GA-SRVLAVDIDPEALEI 83 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh---------c------CC-cEEEEEecCHHHHHH
Confidence 445799999999999988752 1 23 268888876544333
No 201
>PRK04148 hypothetical protein; Provisional
Probab=84.65 E-value=2.3 Score=36.09 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.5
Q ss_pred CceEEEeeeCCCCc-ccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcch
Q 037735 42 NTFRIADFGCSTGP-NTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDND 93 (329)
Q Consensus 42 ~~~~IaDlGCstG~-nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~nd 93 (329)
+..+|+|+|||+|. .+..+.+ -...|+..|.-.+-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~-----------------~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE-----------------SGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH-----------------CCCEEEEEECCHHH
Confidence 34789999999997 5555542 12578888886654
No 202
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=83.88 E-value=1.4 Score=41.13 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=40.9
Q ss_pred ccccccccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 112 VPGSFYSSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 112 vpgsFy~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
+.|+.|+-+ |+++|+|+++ .++|.- +- ..+.|.+ .|..+-+|.|+|||+|
T Consensus 190 ilGD~~e~V~~~~D~sfDaIi--------HDPPRf------------S~-AgeLYse-------efY~El~RiLkrgGrl 241 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAII--------HDPPRF------------SL-AGELYSE-------EFYRELYRILKRGGRL 241 (287)
T ss_pred ecccHHHHHhcCCccccceEe--------eCCCcc------------ch-hhhHhHH-------HHHHHHHHHcCcCCcE
Confidence 457888777 9999999986 467733 11 1267776 7889999999999999
Q ss_pred EEEec
Q 037735 190 ALVMF 194 (329)
Q Consensus 190 ~~~~~ 194 (329)
+=-+-
T Consensus 242 FHYvG 246 (287)
T COG2521 242 FHYVG 246 (287)
T ss_pred EEEeC
Confidence 76553
No 203
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=83.82 E-value=4.6 Score=35.90 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=65.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc-----
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY----- 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy----- 117 (329)
-.-|+|+|-|||..|..+++.- . .|+ .++.-.- +-||-.+.+.+.+..++ +- |+.+
T Consensus 49 glpVlElGPGTGV~TkaIL~~g--------v-----~~~-~L~~iE~-~~dF~~~L~~~~p~~~i-i~---gda~~l~~~ 109 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRG--------V-----RPE-SLTAIEY-SPDFVCHLNQLYPGVNI-IN---GDAFDLRTT 109 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcC--------C-----Ccc-ceEEEEe-CHHHHHHHHHhCCCccc-cc---cchhhHHHH
Confidence 3579999999999999988511 0 222 2332222 24777766655443332 22 2333
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
--.++..-+|.++|..-+ |+ .|. ...- +.|+.--.-|.+||.++.-+.|+-
T Consensus 110 l~e~~gq~~D~viS~lPl--l~-~P~---------------~~~i-----------aile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 110 LGEHKGQFFDSVISGLPL--LN-FPM---------------HRRI-----------AILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred HhhcCCCeeeeEEecccc--cc-CcH---------------HHHH-----------HHHHHHHHhcCCCCeEEEEEecCC
Confidence 223677788999886433 22 231 1111 456666777999999999999965
Q ss_pred C
Q 037735 198 D 198 (329)
Q Consensus 198 ~ 198 (329)
+
T Consensus 161 s 161 (194)
T COG3963 161 S 161 (194)
T ss_pred C
Confidence 4
No 204
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=83.23 E-value=3.3 Score=38.66 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=19.0
Q ss_pred CceEEEeeeCCCCcccHHHHH
Q 037735 42 NTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~ 62 (329)
+...|+|+|.|+|..|..+.+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~ 50 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLK 50 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhc
Confidence 468899999999999999985
No 205
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=81.29 E-value=1.6 Score=43.05 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=27.3
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL 97 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l 97 (329)
.+|+|+|||+|..|+.+.+ + ..+|+.-|.........
T Consensus 235 ~~vLDL~cG~G~~~l~la~--------~---------~~~v~~vE~~~~av~~a 271 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG--------P---------DTQLTGIEIESEAIACA 271 (374)
T ss_pred CEEEEccCCccHHHHHHhh--------c---------CCeEEEEECCHHHHHHH
Confidence 5899999999999988874 1 13688888875554433
No 206
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=80.86 E-value=3.7 Score=38.99 Aligned_cols=126 Identities=19% Similarity=0.159 Sum_probs=70.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeee-cccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAA-GVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~-gvpgsFy~ 118 (329)
...+|+|+-+|.|.-|..+.+.+ ...-.++.+|...+-+..+-.++... .++-+. +..+.+ .
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~--------------~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~-~ 149 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELM--------------GNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL-D 149 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHT--------------TTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH-H
T ss_pred ccccccccccCCCCceeeeeecc--------------cchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc-c
Confidence 34679999999999999887522 11358999999887777765543211 122111 221222 1
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh----ccCceEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL----VPGGLAA 190 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL----~pGG~l~ 190 (329)
.-.+...+|.|. -++||+ . +.+. .+-...++..+.+.=.-| ...|..-++-+ +|||+|+
T Consensus 150 ~~~~~~~fd~Vl--------vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q-----~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 150 PKKPESKFDRVL--------VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQ-----REILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp HHHHTTTEEEEE--------EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHH-----HHHHHHHHHCEHHHBEEEEEEE
T ss_pred ccccccccchhh--------cCCCccchhhhhhccchhhcccccccchHHHHH-----HHHHHHHHHhhcccccCCCeEE
Confidence 112333466664 356666 1 1111 011111222222211222 36788888999 9999999
Q ss_pred EEecc
Q 037735 191 LVMFS 195 (329)
Q Consensus 191 ~~~~g 195 (329)
-+|..
T Consensus 217 YsTCS 221 (283)
T PF01189_consen 217 YSTCS 221 (283)
T ss_dssp EEESH
T ss_pred EEecc
Confidence 99965
No 207
>PRK00536 speE spermidine synthase; Provisional
Probab=80.82 E-value=7.6 Score=36.66 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=58.8
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gv 112 (329)
.++|.+||=+|=|.|...+.+++ -|+ +|.+.|+=...-...-+-+|. .+--.+.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLk----------------h~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-- 130 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFK----------------YDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-- 130 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHC----------------cCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--
Confidence 46789999999999998888874 233 788888865433332222432 1111110
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
++.. -+.+++|+|+.=++ +. ..|.+...+.|+|||.|+..
T Consensus 131 ---~~~~-~~~~~fDVIIvDs~-------~~-----------------------------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 131 ---QLLD-LDIKKYDLIICLQE-------PD-----------------------------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred ---hhhh-ccCCcCCEEEEcCC-------CC-----------------------------hHHHHHHHHhcCCCcEEEEC
Confidence 1111 12356777665532 21 27789999999999999886
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 171 s 171 (262)
T PRK00536 171 A 171 (262)
T ss_pred C
Confidence 4
No 208
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=79.98 E-value=4.5 Score=41.46 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccc
Q 037735 3 GGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEF 82 (329)
Q Consensus 3 gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~ 82 (329)
+|.....|......=++.+..-..++.-.+. ......|.|...+.|.++..|.+ .|
T Consensus 332 ~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~------~~~iRNVMDMnAg~GGFAAAL~~----------------~~-- 387 (506)
T PF03141_consen 332 PGISPEEFKEDTKHWKKRVSHYKKLLGLAIK------WGRIRNVMDMNAGYGGFAAALID----------------DP-- 387 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccc------ccceeeeeeecccccHHHHHhcc----------------CC--
Confidence 3445556666665545555544444432221 34567799999999999999864 34
Q ss_pred eEEecCCCcchHHhhhhcCCCCcceeeeccccccc---ccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcH
Q 037735 83 QVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY---SSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVN 158 (329)
Q Consensus 83 ~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy---~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~ 158 (329)
-.+.|=.|...-|+| + -+|-=|.-|.++ |.. +-+.++||+|++.-+-=..+-
T Consensus 388 VWVMNVVP~~~~ntL----~---vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~r----------------- 443 (506)
T PF03141_consen 388 VWVMNVVPVSGPNTL----P---VIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDR----------------- 443 (506)
T ss_pred ceEEEecccCCCCcc----h---hhhhcccchhccchhhccCCCCcchhheehhhhhhhhccc-----------------
Confidence 456666676555553 1 112112222232 333 346789999988665322211
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 159 EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 159 ~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
-++.-.|-+.-|-|+|||.+++
T Consensus 444 -----------C~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 444 -----------CEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred -----------ccHHHHHHHhHhhcCCCceEEE
Confidence 1456778999999999999887
No 209
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.91 E-value=0.32 Score=42.52 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=37.0
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++.|-++|+|++...-.+.-|.- .....+|+.+.+-|+|||+|-++++.-
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~-----------------------------~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTY-----------------------------DEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhH-----------------------------HHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 77788899998865543333221 234588999999999999999998743
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=79.80 E-value=2.6 Score=41.37 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=28.6
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~ 100 (329)
.+|+|+|||+|..|+.+.... ..|+..|........+-++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-----------------~~v~~vE~~~~av~~a~~n 238 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-----------------RRVLATEIAKPSVNAAQYN 238 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-----------------CEEEEEECCHHHHHHHHHH
Confidence 369999999999999665411 2688888876665554444
No 211
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=79.22 E-value=2.1 Score=38.54 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHH
Q 037735 15 AYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~ 62 (329)
..|.+++.-+++.+. +-.+ ....-+|+|||||-|..-+.|.+
T Consensus 46 ~ae~riv~wl~d~~~--~~rv----~~~A~~VlDLGtGNG~~L~~L~~ 87 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIV--ISRV----SKQADRVLDLGTGNGHLLFQLAK 87 (227)
T ss_pred cHHHHHHHHHHhhhh--hhhh----cccccceeeccCCchHHHHHHHH
Confidence 345555555554444 1122 22233999999999987777764
No 212
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=79.15 E-value=3.6 Score=39.50 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=32.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL 101 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l 101 (329)
..+++|.+||.|.-|..+++.+ .|...|+.-|.-.......-+.+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~--------------~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL--------------GPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC--------------CCCCEEEEEcCCHHHHHHHHHhh
Confidence 3589999999999999998632 33467888888766555443333
No 213
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=79.02 E-value=68 Score=31.44 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceE
Q 037735 172 FQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFT 251 (329)
Q Consensus 172 ~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~ 251 (329)
.-.+|....+-|+|||..+ .+|+=--...+..+.. .+| ..-++.|++..+.+.- +|+
T Consensus 275 ileYi~tI~~iLk~GGvWi--NlGPLlYHF~d~~g~~----------~~~----------siEls~edl~~v~~~~-GF~ 331 (369)
T KOG2798|consen 275 ILEYIDTIYKILKPGGVWI--NLGPLLYHFEDTHGVE----------NEM----------SIELSLEDLKRVASHR-GFE 331 (369)
T ss_pred HHHHHHHHHHhccCCcEEE--eccceeeeccCCCCCc----------ccc----------cccccHHHHHHHHHhc-CcE
Confidence 4478999999999999854 4444211000000000 111 3347899999988866 599
Q ss_pred EeEEEEeecC
Q 037735 252 IERMEKMTNP 261 (329)
Q Consensus 252 i~~~e~~~~~ 261 (329)
+++-+.++..
T Consensus 332 ~~ke~~Idt~ 341 (369)
T KOG2798|consen 332 VEKERGIDTT 341 (369)
T ss_pred EEEeeeeecc
Confidence 9998876544
No 214
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.58 E-value=10 Score=37.52 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-----ccCCCHHHHHHHHHhC
Q 037735 174 TFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----MYNPTPKELEGIIQRN 247 (329)
Q Consensus 174 ~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----~y~ps~eE~~~~i~~~ 247 (329)
-.+..-..-+.|||.||+.=.|.+- -|+.|..|=..|..-|-...|. +..|.+.+-+-+|.-.
T Consensus 206 ~~ie~lw~l~~~gg~lVivErGtp~-----------Gf~~I~rAR~~ll~~~~~~~e~~~~ahiiAPCPH~~~CPl~v~ 273 (484)
T COG5459 206 VNIERLWNLLAPGGHLVIVERGTPA-----------GFERILRARQILLAPGNFPDEFNYFAHIIAPCPHQRKCPLQVP 273 (484)
T ss_pred HHHHHHHHhccCCCeEEEEeCCCch-----------hHHHHHHHHHHHhcCCCCccccccceeeeccCCCCCCCCccCC
Confidence 3577777889999999998877553 3778888888888888766666 3447777777666543
No 215
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=78.48 E-value=4.7 Score=35.90 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL 101 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l 101 (329)
..+++|++||||..++.+++ + .. -.|++.|....-...+-+++
T Consensus 50 g~~vLDLfaGsG~lglea~s--------r-------ga-~~v~~vE~~~~a~~~~~~N~ 92 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALS--------R-------GA-KVAFLEEDDRKANQTLKENL 92 (189)
T ss_pred CCEEEEecCCCcHHHHHHHh--------C-------CC-CEEEEEeCCHHHHHHHHHHH
Confidence 36899999999999999986 2 11 26888888765555554443
No 216
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=77.80 E-value=3.3 Score=40.67 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=27.9
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~ 100 (329)
.+++|++||+|..|+.+.... -+|+..|........+-++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-----------------~~v~~vE~~~~ai~~a~~N 247 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-----------------RRVLATEISKPSVAAAQYN 247 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-----------------CEEEEEECCHHHHHHHHHH
Confidence 469999999999999665311 2577788776555554443
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=76.43 E-value=7.8 Score=38.13 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH 89 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL 89 (329)
.-.+++|+|||+|..|..+++ + ...|+.-|.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~--------r---------G~~V~AVD~ 241 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVR--------R---------GMFVTAVDN 241 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHH--------c---------CCEEEEEec
Confidence 457899999999999999985 1 148999994
No 218
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.08 E-value=1.6 Score=37.89 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=22.9
Q ss_pred HHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHH
Q 037735 20 QVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIA 60 (329)
Q Consensus 20 ~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l 60 (329)
++..++..|.+.+.+ .+..+|+|+|||+|.++...
T Consensus 32 iAasM~~~Ih~Tygd------iEgkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 32 IAASMLYTIHNTYGD------IEGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred HHHHHHHHHHhhhcc------ccCcchhhhcCchhhhHHHh
Confidence 344455555544433 34578999999999988544
No 219
>PRK11524 putative methyltransferase; Provisional
Probab=76.01 E-value=5.8 Score=37.49 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCceEEEEe
Q 037735 172 FQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 172 ~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+..+|....+.|+|||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5688999999999999999853
No 220
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=75.42 E-value=15 Score=36.40 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=69.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy 117 (329)
.+-.+|||+=.+.|.=|..+++.+ +.. +. .-.|+.||.-..-.+.|-..+ +. .++-+. +.-
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal-------~~~---~~-~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~----~~~ 217 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEAL-------HKD---PT-RGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVT----NHD 217 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHH-------hcC---CC-CCeeEecccCHHHHHHHHHHHhccCC-cceeee----ccc
Confidence 345789999999999999998744 111 01 137999999765555554443 32 122221 122
Q ss_pred cccCCCCcee-EE-Eecccee-cccCCCCC-C-CCccceeecCCcHHHHHH-HHHHHhhcH----HHHHHHHHHHhccCc
Q 037735 118 SSLFPKSSLH-FV-HSSYTLH-WLSKVPKV-D-GVEGSIQTRRFVNEVMEA-YAAQFNNDF----QTFLNTRAQELVPGG 187 (329)
Q Consensus 118 ~~lfp~~s~d-l~-~Ss~alh-WLs~~p~~-~-~n~g~i~~~~~~~~~~~a-y~~q~~~D~----~~FL~~ra~eL~pGG 187 (329)
..++|+--++ -. .....+- =|-++||+ | +.+. .+.+.+- +..|-..+| -++|..-.+-|++||
T Consensus 218 ~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk-------~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375)
T KOG2198|consen 218 ASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRK-------NPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375)
T ss_pred ceeccccccccCchhhhhhcceeEEecccCCCccccc-------CchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC
Confidence 3334433222 00 0000000 13457777 4 1111 1111111 111111111 267888889999999
Q ss_pred eEEEEecccC
Q 037735 188 LAALVMFSVP 197 (329)
Q Consensus 188 ~l~~~~~g~~ 197 (329)
.||-||..-+
T Consensus 291 ~lVYSTCSLn 300 (375)
T KOG2198|consen 291 RLVYSTCSLN 300 (375)
T ss_pred EEEEeccCCC
Confidence 9999998643
No 221
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=75.42 E-value=7.5 Score=41.17 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~i 64 (329)
.+.++|+|+|=|+|.|++..++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~ 79 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAF 79 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHH
Confidence 456999999999999999999754
No 222
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=74.74 E-value=6.3 Score=37.00 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=50.7
Q ss_pred HhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcch--HHhhh-hcC
Q 037735 25 RYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDND--FNTLF-KSL 101 (329)
Q Consensus 25 ~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~nd--fn~lf-~~l 101 (329)
+|.|++-.+.+... .+.+.+|+|+|||--|.++-.+. ..|.+.++..|+-.-. |-..| ..+
T Consensus 89 l~~Ld~fY~~if~~-~~~p~sVlDigCGlNPlalp~~~---------------~~~~a~Y~a~DID~~~ve~l~~~l~~l 152 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWMP---------------EAPGATYIAYDIDSQLVEFLNAFLAVL 152 (251)
T ss_dssp GGGHHHHHHHHCCC-S---SEEEEET-TTCHHHHHTTT---------------SSTT-EEEEEESBHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhc-CCCCchhhhhhccCCceehhhcc---------------cCCCcEEEEEeCCHHHHHHHHHHHHhh
Confidence 44455444444221 35589999999999998887773 2455789999986432 22222 334
Q ss_pred CCCcceeeecccccccccc--CCCCceeEEEeccceecccCC
Q 037735 102 PQSRSYYAAGVPGSFYSSL--FPKSSLHFVHSSYTLHWLSKV 141 (329)
Q Consensus 102 ~~~~~~f~~gvpgsFy~~l--fp~~s~dl~~Ss~alhWLs~~ 141 (329)
.....+-+. +.+ .|+...|+..-.=++|=|.+-
T Consensus 153 ~~~~~~~v~-------Dl~~~~~~~~~DlaLllK~lp~le~q 187 (251)
T PF07091_consen 153 GVPHDARVR-------DLLSDPPKEPADLALLLKTLPCLERQ 187 (251)
T ss_dssp T-CEEEEEE--------TTTSHTTSEESEEEEET-HHHHHHH
T ss_pred CCCcceeEe-------eeeccCCCCCcchhhHHHHHHHHHHH
Confidence 321111111 333 377788888877777666543
No 223
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=71.56 E-value=21 Score=33.14 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=64.8
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gv 112 (329)
.+++.+||=+|=|.|..+..+++ + .+..++...|+-..-....-+-++ +.+--.+.+.
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~---------~------~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLK---------H------PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTT---------S------TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred CCCcCceEEEcCCChhhhhhhhh---------c------CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 35789999999999988877763 1 222477777876543332211111 1233345666
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|-.+.--. .+|+|+.=..--+ -|.. . -|. ..|++..++-|+|||.+++.
T Consensus 139 g~~~l~~~~~~-~yDvIi~D~~dp~---~~~~--------------~---l~t-------~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 139 GRKFLKETQEE-KYDVIIVDLTDPD---GPAP--------------N---LFT-------REFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp HHHHHHTSSST--EEEEEEESSSTT---SCGG--------------G---GSS-------HHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHhccCC-cccEEEEeCCCCC---CCcc--------------c---ccC-------HHHHHHHHhhcCCCcEEEEE
Confidence 66665554332 8999986443211 0100 0 111 27899999999999999998
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 191 ~ 191 (246)
T PF01564_consen 191 A 191 (246)
T ss_dssp E
T ss_pred c
Confidence 8
No 224
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=71.01 E-value=50 Score=33.45 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=74.5
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSF 116 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsF 116 (329)
+.+-.||+|.=++.|.=|-.+..-+ ++ +-.||.||--.|-...+-.++. ....+-....+..|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalM---------kn-----~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef 304 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALM---------KN-----TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREF 304 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHH---------cC-----CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccc
Confidence 3456899999999999996665311 11 2479999987776666655443 21222223333334
Q ss_pred ccccCCCCceeEEEeccceecccCCCCC---CCCccceeecC-CcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKV---DGVEGSIQTRR-FVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~---~~n~g~i~~~~-~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
=+-.||+ |+|=| |=+.||+ -.+|..-.++. +..++.+...-| +..|..--+-+++||+||-+
T Consensus 305 ~~~~~~~-~fDRV--------LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ-----r~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 305 PEKEFPG-SFDRV--------LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ-----RELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred cccccCc-cccee--------eecCCCCCCcccccccccccchhHHHHHHhHHHH-----HHHHHHHHhhccCCcEEEEE
Confidence 3344555 55544 2345665 12333333332 333443333222 24567778889999999999
Q ss_pred ecccC
Q 037735 193 MFSVP 197 (329)
Q Consensus 193 ~~g~~ 197 (329)
|....
T Consensus 371 TCSI~ 375 (460)
T KOG1122|consen 371 TCSIT 375 (460)
T ss_pred eeecc
Confidence 98744
No 225
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=70.74 E-value=6.8 Score=35.45 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=52.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CC--cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QS--RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~--~~~f~~gvpgsFy 117 (329)
+..+|+|.-||.|++|+.+.+ . . +...|+.+|+-..-+..|-+++. .- .-....|+ .
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak--------~-~------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D---~- 161 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAK--------H-G------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGD---A- 161 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHH--------H-T-------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES----G-
T ss_pred cceEEEEccCCccHHHHHHhh--------h-c------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCC---H-
Confidence 357999999999999999864 1 1 12479999996656666655432 11 11234444 3
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
..+.+.+.+| |.+-.+|.. -..||..-..-+++||.+-
T Consensus 162 ~~~~~~~~~d--------rvim~lp~~---------------------------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 162 REFLPEGKFD--------RVIMNLPES---------------------------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp GG---TT-EE--------EEEE--TSS---------------------------GGGGHHHHHHHEEEEEEEE
T ss_pred HHhcCccccC--------EEEECChHH---------------------------HHHHHHHHHHHhcCCcEEE
Confidence 2223366777 444445533 0156777777788888764
No 226
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=70.54 E-value=2.5 Score=37.08 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C-CCcceeeecccccccccc
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P-QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~-~~~~~f~~gvpgsFy~~l 120 (329)
+|+|.-||.|.||+.+... + -+|+.-|+-..-...+-.+. . ..+--|+.| +|.+.+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--------~---------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~g---D~~~~~ 61 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--------F---------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICG---DFFELL 61 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--------T----------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES----HHHHG
T ss_pred EEEEeccCcCHHHHHHHHh--------C---------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC---CHHHHH
Confidence 6899999999999999862 1 26888887554433332221 1 112346665 565433
Q ss_pred --CCCCc-eeEEEec
Q 037735 121 --FPKSS-LHFVHSS 132 (329)
Q Consensus 121 --fp~~s-~dl~~Ss 132 (329)
+..+. +|+||.|
T Consensus 62 ~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 62 KRLKSNKIFDVVFLS 76 (163)
T ss_dssp GGB------SEEEE-
T ss_pred hhccccccccEEEEC
Confidence 22223 5888754
No 227
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=70.30 E-value=7.8 Score=35.13 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.0
Q ss_pred CCceEEEeeeCCCCcccHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~ 62 (329)
.+-.+|+|+||+.|.-|.-.++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHH
Confidence 3458999999999999988876
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=69.45 E-value=22 Score=32.87 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=58.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCccee-eeccccc--ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYY-AAGVPGS--FYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f-~~gvpgs--Fy~ 118 (329)
+-.+||-||.++|. |..-++.|+ .|+-.||......-....|...-....+++ +.+..+- =|.
T Consensus 73 ~gskVLYLGAasGT-TVSHvSDIv-------------g~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 73 PGSKVLYLGAASGT-TVSHVSDIV-------------GPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp TT-EEEEETTTTSH-HHHHHHHHH-------------TTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCEEEEecccCCC-ccchhhhcc-------------CCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 34799999999997 666666664 234467777766544444432211112333 2222221 235
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHH-HHhccCceEEEEeccc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRA-QELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra-~eL~pGG~l~~~~~g~ 196 (329)
.+.+ .+|++++-.| .. |=.+++..-+ .-|++||.+++++=.+
T Consensus 139 ~lv~--~VDvI~~DVa--------Qp--------------------------~Qa~I~~~Na~~fLk~gG~~~i~iKa~ 181 (229)
T PF01269_consen 139 MLVE--MVDVIFQDVA--------QP--------------------------DQARIAALNARHFLKPGGHLIISIKAR 181 (229)
T ss_dssp TTS----EEEEEEE-S--------ST--------------------------THHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cccc--cccEEEecCC--------Ch--------------------------HHHHHHHHHHHhhccCCcEEEEEEecC
Confidence 5555 8999987543 11 1123444444 6899999999998654
No 229
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=68.58 E-value=10 Score=33.56 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=61.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccce-eeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSY-YAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~-f~~gvpgsFy 117 (329)
...++||+=||||..++..++ +- . -+|++.|.-..-++.+-+++.. ...+ .+.+.--.++
T Consensus 42 ~g~~vLDLFaGSGalGlEALS--------RG-------A-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS--------RG-------A-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH--------TT---------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred CCCeEEEcCCccCccHHHHHh--------cC-------C-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 357899999999999998886 31 1 3789999876666666555431 1112 2222222334
Q ss_pred ccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhc-HHHHHHHHH--HHhccCceEEEEe
Q 037735 118 SSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNND-FQTFLNTRA--QELVPGGLAALVM 193 (329)
Q Consensus 118 ~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D-~~~FL~~ra--~eL~pGG~l~~~~ 193 (329)
.++ -+...+|+|+. ++|=. .+ + ....|..-. .-|+++|++++-.
T Consensus 106 ~~~~~~~~~fDiIfl--------DPPY~---~~---------------------~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFL--------DPPYA---KG---------------------LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHCTS-EEEEEE----------STT---SC---------------------HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HhhcccCCCceEEEE--------CCCcc---cc---------------------hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 444 25788998874 45511 10 1 133344443 7899999999887
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
.-+.
T Consensus 154 ~~~~ 157 (183)
T PF03602_consen 154 SKKE 157 (183)
T ss_dssp ETTS
T ss_pred cCCC
Confidence 6553
No 230
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=66.72 E-value=5.3 Score=32.94 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~ 100 (329)
+|+|+||++|..|..+.. . .|..+++.-|--...+..+-++
T Consensus 1 ~vlDiGa~~G~~~~~~~~--------~-------~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFAR--------K-------GAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHH--------h-------CCCCEEEEEecCHHHHHHHHHH
Confidence 489999999999887764 2 2324688888766666655444
No 231
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=65.95 E-value=3.3 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=0.0
Q ss_pred EeeeCCCCcccHHHHHHH
Q 037735 47 ADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 47 aDlGCstG~nT~~l~~~i 64 (329)
+|+||..|..|..+.+.+
T Consensus 1 lEiG~~~G~st~~l~~~~ 18 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASAL 18 (106)
T ss_dssp ------------------
T ss_pred Cccccccccccccccccc
Confidence 589999999999988644
No 232
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=63.86 E-value=32 Score=34.42 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=67.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCCcceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~~~~f~~gvpgsFy 117 (329)
--++||+=|=||..|+.... . -. -+|+..|+..--..-.-++ +...+--|+.|.--.|.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~--------g-------GA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l 281 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL--------G-------GA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWL 281 (393)
T ss_pred CCeEEEecccCcHHHHHHHh--------c-------CC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHH
Confidence 35799999999999988863 1 11 2799999984322222222 22222234544322333
Q ss_pred cccCCCC-ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKS-SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~-s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+..-..+ .+|+|+- ++|.- +.++... .+..+|....+....+-|+|||.+++++..
T Consensus 282 ~~~~~~g~~fDlIil--------DPPsF---------~r~k~~~-----~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 282 RKAERRGEKFDLIIL--------DPPSF---------ARSKKQE-----FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHhcCCcccEEEE--------CCccc---------ccCcccc-----hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 3333322 5666652 23311 1111111 456778888999999999999999999854
No 233
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=63.82 E-value=54 Score=35.23 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.9
Q ss_pred ceEEEeeeCCCCcccHHHH
Q 037735 43 TFRIADFGCSTGPNTFIAV 61 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~ 61 (329)
...++|-+||+|...+...
T Consensus 191 ~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCeEEccCCCccHHHHHHH
Confidence 4789999999998877664
No 234
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=63.41 E-value=34 Score=34.17 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=91.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHH-----hhhhcCCCCcceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFN-----TLFKSLPQSRSYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn-----~lf~~l~~~~~~f~~gvpgs 115 (329)
+.-.+++=+|-|.|--.+.++ +|++ --|+...||-..+-. +..+.+. .||
T Consensus 288 ~~a~~vLvlGGGDGLAlRell---------kyP~------~~qI~lVdLDP~miela~~~~vlr~~N----------~~s 342 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL---------KYPQ------VEQITLVDLDPRMIELASHATVLRALN----------QGS 342 (508)
T ss_pred cccceEEEEcCCchHHHHHHH---------hCCC------cceEEEEecCHHHHHHhhhhhHhhhhc----------cCC
Confidence 566889999999998777776 3321 248899999765522 2222222 256
Q ss_pred cccccCCCCceeEEEeccceecccCCCCC-CCCccceee---cCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQT---RRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 116 Fy~~lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~---~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
|++ -.++ +++--|++||...... | .|.+ ..+.|+..+.|.. .|...-++.|+++|+|++
T Consensus 343 f~d-----pRv~-Vv~dDAf~wlr~a~~~fD----~vIVDl~DP~tps~~rlYS~-------eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 343 FSD-----PRVT-VVNDDAFQWLRTAADMFD----VVIVDLPDPSTPSIGRLYSV-------EFYRLLSRHLAETGLMVV 405 (508)
T ss_pred ccC-----CeeE-EEeccHHHHHHhhccccc----EEEEeCCCCCCcchhhhhhH-------HHHHHHHHhcCcCceEEE
Confidence 753 2333 5677899999865432 1 1111 1356677788887 778889999999999998
Q ss_pred EecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhC
Q 037735 192 VMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRN 247 (329)
Q Consensus 192 ~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~ 247 (329)
.--.+=.... .+|. +...+-+.|.-.-.- .|.||--||.-++...
T Consensus 406 Qags~y~tp~-------vfw~----i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 406 QAGSPYFTPR-------VFWR----IDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred ecCCCccCCc-------eeee----ehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 7533211111 1221 123333445210001 6678888876665544
No 235
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=60.10 E-value=5.3 Score=36.79 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~ 119 (329)
..++.+++|+|.|.|--|..+.-.+ | +||...|...|-+.|-+. .|-+.+. -+-
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~p~f----------------e-evyATElS~tMr~rL~kk-----~ynVl~~----~ew 163 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMAPTF----------------E-EVYATELSWTMRDRLKKK-----NYNVLTE----IEW 163 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhcchH----------------H-HHHHHHhhHHHHHHHhhc-----CCceeee----hhh
Confidence 4567999999999999998775322 1 355555555554444321 1111110 010
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc-CceEEEEeccc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP-GGLAALVMFSV 196 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p-GG~l~~~~~g~ 196 (329)
+--+=.+|+|.+..-|.=+-++- +.|+-....|+| .|+.++++.-+
T Consensus 164 ~~t~~k~dli~clNlLDRc~~p~-------------------------------kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 164 LQTDVKLDLILCLNLLDRCFDPF-------------------------------KLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred hhcCceeehHHHHHHHHhhcChH-------------------------------HHHHHHHHHhccCCCcEEEEEEec
Confidence 11111466665555554443322 568888889999 99999888644
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=57.79 E-value=5.1 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.6
Q ss_pred HHHHHHHHHhccCceEEEEe
Q 037735 174 TFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 174 ~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.+.+-+=.|++||.++..+
T Consensus 164 ~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hHHHHHHhhhhcCceEEEEe
Confidence 55777888899999998876
No 237
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=57.50 E-value=46 Score=31.78 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-------cceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-------RSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-------~~~f~~gv 112 (329)
.+++.+|+=+|=|.|..++.+++ . ... -+++..|+-..--.-..+-+|.. +--.+.+.
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlk--------h------~~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLK--------H------LPV-ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHh--------c------CCc-ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 35557999999999999988874 1 123 37788887543222222223321 11122223
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+.-|-.+ .+. .+|+|+.-++=. . -|.. ..|. ..|++.+++.|+++|+++..
T Consensus 139 g~~~v~~-~~~-~fDvIi~D~tdp--~-gp~~-----------------~Lft-------~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 139 GVEFLRD-CEE-KFDVIIVDSTDP--V-GPAE-----------------ALFT-------EEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHh-CCC-cCCEEEEcCCCC--C-Cccc-----------------ccCC-------HHHHHHHHHhcCCCcEEEEe
Confidence 2222111 222 566666543311 0 0100 0111 27899999999999999988
No 238
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=56.96 E-value=9.2 Score=31.42 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.1
Q ss_pred CCceEEEeeeCCCCcccHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~ 62 (329)
.++....|+|||-|-+.-.|.+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh
Confidence 3567889999999987776653
No 239
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=51.77 E-value=30 Score=31.60 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=78.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe---cCC--CcchH----HhhhhcCCCCcceeeeccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF---NDH--SDNDF----NTLFKSLPQSRSYYAAGVP 113 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~---nDL--p~ndf----n~lf~~l~~~~~~f~~gvp 113 (329)
-.+|+|+=-|.|..|..+...+ .|+-.|+. +++ +.+++ +++++.- ...+.=+.|
T Consensus 49 g~tVid~~PGgGy~TrI~s~~v--------------gp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~-- 111 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAV--------------GPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIG-- 111 (238)
T ss_pred CCEEEEEecCCccHhhhhchhc--------------CCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhC--
Confidence 4688999999999999986433 23322221 111 22232 2222110 001111111
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.- --++|++-+|+++....-|=|..-+ |+ -++++ .+.+.-.+.|||||.+++.=
T Consensus 112 ~~~-~A~~~pq~~d~~~~~~~yhdmh~k~--------i~---------~~~A~-------~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 112 KPL-VALGAPQKLDLVPTAQNYHDMHNKN--------IH---------PATAA-------KVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred Ccc-cccCCCCcccccccchhhhhhhccc--------cC---------cchHH-------HHHHHHHHhcCCCcEEEEEe
Confidence 111 1234778888888777666554332 32 12222 44666778999999998864
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
---.-+...+. .....+.+..-+.+.++.. +|+++--.++
T Consensus 167 H~a~pG~~~~d------------------------t~~~~ri~~a~V~a~veaa-GFkl~aeS~i 206 (238)
T COG4798 167 HRADPGSGLSD------------------------TITLHRIDPAVVIAEVEAA-GFKLEAESEI 206 (238)
T ss_pred ccccCCCChhh------------------------hhhhcccChHHHHHHHHhh-cceeeeeehh
Confidence 32211111100 0013446777888888888 4888755544
No 240
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=51.58 E-value=85 Score=30.94 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=68.2
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccccC
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~lf 121 (329)
..|+|==||||..-...- -....++.+|+-.-+-...-.+|... ..|.+. ...+.-.-.|
T Consensus 199 ~~vlDPFcGTGgiLiEag-----------------l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~-~~~Da~~lpl 260 (347)
T COG1041 199 ELVLDPFCGTGGILIEAG-----------------LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVL-KVLDATNLPL 260 (347)
T ss_pred CEeecCcCCccHHHHhhh-----------------hcCceEeecchHHHHHhhhhhhhhhhCcCceeEE-EecccccCCC
Confidence 488999999998654441 12368999999766655554454321 123221 1125544448
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHH-HHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNE-VMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~-~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
|++++|-|++ ++|=. +- ++...+ ..+.| ..||..-++.|++||+++|..+
T Consensus 261 ~~~~vdaIat--------DPPYG-----rs--t~~~~~~l~~Ly--------~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIAT--------DPPYG-----RS--TKIKGEGLDELY--------EEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEe--------cCCCC-----cc--cccccccHHHHH--------HHHHHHHHHHhhcCcEEEEecC
Confidence 9999998875 56633 00 000111 22333 4789999999999999999987
No 241
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=49.71 E-value=38 Score=30.84 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=31.7
Q ss_pred chHHHhHHHH---HHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHH
Q 037735 9 SYASNSAYQS---IQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 9 sY~~nS~~Q~---~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~i 64 (329)
-|.+-|..+. +++..+.++.++. .+ -.+-.+|+||||+.|.-|..+.+.+
T Consensus 15 ~Y~~~Ak~~gyRSRAa~KL~el~~k~--~i----~~~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 15 PYYKKAKKEGYRSRAAYKLLELNEKF--KL----FKPGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhc--Ce----ecCCCEEEEcCCCCCcHHHHHHHHh
Confidence 4555555553 3444445554433 22 2345899999999999999887633
No 242
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=48.16 E-value=14 Score=35.21 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=23.8
Q ss_pred HhHhhHHHHH-hhcccCCCCCceEEEeeeCCCCcccHHHH
Q 037735 23 ILRYDPRTAV-TDLGTNAVPNTFRIADFGCSTGPNTFIAV 61 (329)
Q Consensus 23 ~~~~~l~~ai-~~i~~~~~~~~~~IaDlGCstG~nT~~l~ 61 (329)
.+.+.+.+++ ..+ .-.--||+|||||+|--.+...
T Consensus 100 dl~~~l~~e~~~~~----~~~~k~vLELgCg~~Lp~i~~~ 135 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQM----SFSGKRVLELGCGAALPGIFAF 135 (282)
T ss_pred HHHHHHHHHhhhhe----EecCceeEecCCcccccchhhh
Confidence 4666777665 333 1234689999999998777664
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=46.16 E-value=17 Score=32.92 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.4
Q ss_pred EEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC
Q 037735 46 IADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL 101 (329)
Q Consensus 46 IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l 101 (329)
|||+||=+|.....|++ + ..--.+++.|+..+-++..-.++
T Consensus 1 vaDIGtDHgyLpi~L~~--------~-------~~~~~~ia~DI~~gpL~~A~~~i 41 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLK--------N-------GKAPKAIAVDINPGPLEKAKENI 41 (205)
T ss_dssp EEEET-STTHHHHHHHH--------T-------TSEEEEEEEESSHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHh--------c-------CCCCEEEEEeCCHHHHHHHHHHH
Confidence 69999999999999985 2 11137999999988887766655
No 244
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=45.31 E-value=8.9 Score=36.67 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCCcceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~~~~f~~gvpgsFy 117 (329)
--+|||+=|=||..|+..+. . -. .+|+..|....-....-.+ +...+--|+.+.--.|.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~--------g-------GA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAA--------G-------GA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL 187 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHH--------T-------TE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH
T ss_pred CCceEEecCCCCHHHHHHHH--------C-------CC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 36999999999999998763 1 11 3788999875433332222 22222345555433444
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++--.+.+|+|+. ++|.- -| +.-. ..+|+...+....+-|+|||.|++++.
T Consensus 188 ~~~~~~~~fD~IIl--------DPPsF--~k-------~~~~--------~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 188 KRLKKGGRFDLIIL--------DPPSF--AK-------SKFD--------LERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHTT-EEEEEE----------SSE--ES-------STCE--------HHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHhcCCCCCEEEE--------CCCCC--CC-------CHHH--------HHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 44434567888874 34421 11 1111 235677788888899999999887764
No 245
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=44.22 E-value=51 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHS 90 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp 90 (329)
..+++|+|+|-|-=++-+. | . .|+.+|.+-|--
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I------~-------~p~~~vtLles~ 100 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--I------A-------FPDLKVTLLESL 100 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--H------h-------ccCCcEEEEccC
Confidence 5899999999999888875 2 1 466788888753
No 246
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=41.81 E-value=27 Score=34.61 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=48.7
Q ss_pred CCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEE
Q 037735 6 GAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVF 85 (329)
Q Consensus 6 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~ 85 (329)
+...||-.+.+-|.+.-.+.....+... ....++|+|+-||||..++...+.+ . .. -.|+
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~------~~~~~~vLD~faGsG~rgir~a~e~--------~-----ga-~~Vv 73 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG------KECYINIADALSASGIRAIRYAHEI--------E-----GV-REVF 73 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC------CcCCCEEEECCCchhHHHHHHHhhC--------C-----CC-CEEE
Confidence 4567888777777766554444332210 1124799999999999999997622 0 11 3799
Q ss_pred ecCCCcchHHhhhhcC
Q 037735 86 FNDHSDNDFNTLFKSL 101 (329)
Q Consensus 86 ~nDLp~ndfn~lf~~l 101 (329)
+||+-..-...+-+++
T Consensus 74 ~nD~n~~Av~~i~~N~ 89 (374)
T TIGR00308 74 ANDINPKAVESIKNNV 89 (374)
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999765555554443
No 247
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=40.13 E-value=57 Score=28.57 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccce-eeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSY-YAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~-f~~gvpgsFy 117 (329)
+..+++|-=||||..-+....... ......... +.+++..|.-.+.......++.. ...+ +.. ++|.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~-----~~~~~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~---~D~~ 98 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGA-----NIPPLNDIN-ELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ---WDAR 98 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHT-----TTSTTTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-----GG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhh-----Ccccccccc-cccEEecCCCHHHHHHHHHHHHhcccCCceEEEe---cchh
Confidence 346899999999986655542110 000000000 34588999877666555444421 1111 222 3564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.--++++++|.|+++ +|=. . + .+...+..+-| ..|++.-++.|++ ++++.+.+..
T Consensus 99 ~l~~~~~~~d~Ivtn--------PPyG---~-r---~~~~~~~~~ly--------~~~~~~~~~~l~~--~~v~l~~~~~ 153 (179)
T PF01170_consen 99 ELPLPDGSVDAIVTN--------PPYG---R-R---LGSKKDLEKLY--------RQFLRELKRVLKP--RAVFLTTSNR 153 (179)
T ss_dssp GGGGTTSBSCEEEEE----------ST---T-S---HCHHHHHHHHH--------HHHHHHHHCHSTT--CEEEEEESCC
T ss_pred hcccccCCCCEEEEC--------cchh---h-h---ccCHHHHHHHH--------HHHHHHHHHHCCC--CEEEEEECCH
Confidence 444688999999875 5522 1 0 01122233333 3677888888888 6666665544
No 248
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=39.86 E-value=23 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.4
Q ss_pred CCceEEEeeeCCCCcccHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~ 62 (329)
.+..-+||+|.|||-+|++.+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred CceEEEEEccCCccHHHHHHHH
Confidence 4556789999999999998874
No 249
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=39.80 E-value=3.2e+02 Score=25.49 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCce
Q 037735 172 FQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNF 250 (329)
Q Consensus 172 ~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f 250 (329)
...+|+..++-..||+.+++-.+++-+... .....+... ..+. | ...+. .+.-+++|+.+.++..| |
T Consensus 176 v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~--------~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~l~~~G-w 243 (260)
T TIGR00027 176 VDALLAFIAELSAPGSRLAFDYVRPLDGEW--------RAGMRAPVY-HAAR-G-VDGSGLVFGIDRADVAEWLAERG-W 243 (260)
T ss_pred HHHHHHHHHHhCCCCcEEEEEeccccchhH--------HHHHHHHHH-Hhhh-c-ccccccccCCChhhHHHHHHHCC-C
Confidence 346677777777799999999988722100 000111111 1211 1 22233 66668899999999885 8
Q ss_pred EEeE
Q 037735 251 TIER 254 (329)
Q Consensus 251 ~i~~ 254 (329)
++..
T Consensus 244 ~~~~ 247 (260)
T TIGR00027 244 RASE 247 (260)
T ss_pred eeec
Confidence 7743
No 250
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=37.73 E-value=26 Score=32.37 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=17.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHH
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~i 64 (329)
.+++|+|+|.|+|.+..-+++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 46999999999999877776544
No 251
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=37.71 E-value=35 Score=33.01 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.8
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecc
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+.++|..-..-|+|||+|++.+|-
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 35788899999999999999999985
No 252
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=36.89 E-value=57 Score=31.31 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQN 63 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ 63 (329)
..+-.|||+|-|||..|..++..
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~ 79 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA 79 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh
Confidence 45789999999999999999853
No 253
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=36.50 E-value=35 Score=33.36 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=15.6
Q ss_pred EEEeeeCCCCcccHHHHH
Q 037735 45 RIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~ 62 (329)
+|+|+=||+|..|+.+.+
T Consensus 199 ~vlDlycG~G~fsl~la~ 216 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAK 216 (352)
T ss_dssp EEEEES-TTTCCHHHHHC
T ss_pred cEEEEeecCCHHHHHHHh
Confidence 799999999999999974
No 254
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.35 E-value=38 Score=32.59 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.7
Q ss_pred HhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
=-..+..+|..-..-|+|||+|++.+|-.
T Consensus 211 El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 211 ELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 33468899999999999999999999853
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.81 E-value=44 Score=32.36 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.6
Q ss_pred hhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 169 NNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 169 ~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
=..+..+|..--+-|+|||+|++.+|-.
T Consensus 220 L~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 220 LEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 3568899999999999999999999853
No 256
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.54 E-value=2.8e+02 Score=25.88 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=60.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCCc-ceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQSR-SYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~~-~~f~~gvpgs 115 (329)
-++-+.+|+|-=||.-++...-.+ ++.-.|+.-|...+...- +..+ ..+. --++.|-.-.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alal--------------p~dGrv~a~eid~~~~~~-~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALAL--------------PEDGRVVAIEIDADAYEI-GLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhc--------------CCCceEEEEecChHHHHH-hHHHHHhccccceeeeeecchhh
Confidence 356789999999999766665433 334689999987644322 1111 1111 1233332222
Q ss_pred cccccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 116 FYSSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 116 Fy~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
-..+|. ..+++||+|-= || | . --..++.+.-+-|++||++++-
T Consensus 137 sLd~l~~~~~~~tfDfaFvD---ad----------K-------------~--------nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVD---AD----------K-------------D--------NYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hHHHHHhcCCCCceeEEEEc---cc----------h-------------H--------HHHHHHHHHHhhcccccEEEEe
Confidence 223333 35778887621 11 0 1 1126677888899999999986
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 183 N 183 (237)
T KOG1663|consen 183 N 183 (237)
T ss_pred c
Confidence 6
No 257
>COG2821 MltA Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]
Probab=32.48 E-value=56 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=27.4
Q ss_pred HHHHhcCCcCCCcc--------cCCCHHHHHHHHHhCCceEEe
Q 037735 219 VELTKMGILSKEKM--------YNPTPKELEGIIQRNGNFTIE 253 (329)
Q Consensus 219 ~~l~~eG~i~~~~~--------y~ps~eE~~~~i~~~g~f~i~ 253 (329)
+-|+++|.|+++++ .-..++|+.++|+.+-+|---
T Consensus 224 r~Lid~Gei~~~~~SMq~Ir~W~~~np~rv~elL~~N~sfVFF 266 (373)
T COG2821 224 RLLIDRGEIPKEEMSMQAIRDWFEANPQRVDELLEQNPSFVFF 266 (373)
T ss_pred HHHHHcCCCCcccCCHHHHHHHHHHCHHHHHHHHhhCCceEEE
Confidence 77889999999982 223689999999998776543
No 258
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=32.35 E-value=44 Score=29.60 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=17.4
Q ss_pred HHHHHHHhccCceEEEEec-ccC
Q 037735 176 LNTRAQELVPGGLAALVMF-SVP 197 (329)
Q Consensus 176 L~~ra~eL~pGG~l~~~~~-g~~ 197 (329)
+....+.|||||.|+++++ |++
T Consensus 94 m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 94 MAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred HHHHHHhhccCCeEEEEeecCCc
Confidence 3455678999999999997 654
No 259
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=32.30 E-value=81 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=35.2
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ 103 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~ 103 (329)
.+|+|+||=+|.+...++. . .+--.+++.|...+-|....+.++.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~--------~-------~~~~~~va~eV~~gpl~~a~~~v~~ 62 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVK--------N-------NPASTAVAGEVVPGPLESAIRNVKK 62 (226)
T ss_pred CceeeccCchhHhHHHHHh--------c-------CCcceEEEeecccCHHHHHHHHHHh
Confidence 4499999999999999985 1 2334788999998888887776653
No 260
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=31.53 E-value=69 Score=30.16 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=27.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
.+...++|+|||.|.+|..+...+... +.+...+++-|-.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~----------~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQED----------KPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhc----------ccCCccEEEEecCc
Confidence 345689999999999999987644222 01234677777654
No 261
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.51 E-value=1.4e+02 Score=26.79 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=48.7
Q ss_pred ccc-cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 115 SFY-SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 115 sFy-~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
||. ++++-.+..|+|+=+++||=++.-... ..+|+++.+.+++..-.+.|.|+-.|+.++
T Consensus 39 ~f~~D~ll~gg~~DVIi~Ns~LWDl~ry~~~-------------------~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 39 SFENDVLLEGGRLDLVIMNSCLWDLSRYQRN-------------------SMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred hhccceeecCCceeEEEEecceecccccCCC-------------------CHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 344 455667778999999999976654311 146788899999999999999999999988
Q ss_pred ccc
Q 037735 194 FSV 196 (329)
Q Consensus 194 ~g~ 196 (329)
.-|
T Consensus 100 t~P 102 (183)
T cd01842 100 AMP 102 (183)
T ss_pred CCC
Confidence 654
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=29.88 E-value=39 Score=32.72 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.8
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecc
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.-|..+|..-..-|+|||+|++.+|-
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 34788899999999999999999984
No 263
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=29.08 E-value=61 Score=28.79 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=57.4
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcc--hHHh-hhhcCCCCcceeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDN--DFNT-LFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~n--dfn~-lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+|+|+|+|-|-=.+.+. | . .|+.++++.|--.- .|-. +-+.|.- .++-+. .+...+ ..
T Consensus 51 ~~lDiGSGaGfPGipLa--I------~-------~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~--~~R~E~-~~ 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA--I------A-------RPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVI--NGRAEE-PE 111 (184)
T ss_dssp EEEEETSTTTTTHHHHH--H------H--------TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEE--ES-HHH-TT
T ss_pred eEEecCCCCCChhHHHH--H------h-------CCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEE--Eeeecc-cc
Confidence 89999999998887774 1 1 46788999997632 2222 2233332 123221 123323 45
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+.++|+++|=.. ..+..++.....-|++||.+++.-
T Consensus 112 ~~~~fd~v~aRAv-----------------------------------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 112 YRESFDVVTARAV-----------------------------------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp TTT-EEEEEEESS-----------------------------------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCccEEEeehh-----------------------------------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 6778888876332 134577888888899999977653
No 264
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=29.04 E-value=44 Score=24.14 Aligned_cols=27 Identities=26% Similarity=0.520 Sum_probs=23.5
Q ss_pred HHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 162 EAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 162 ~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
+.+++-|..||..+|......|+.-|+
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778888999999999999998775
No 265
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.71 E-value=52 Score=28.70 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.3
Q ss_pred hcHHHHHHHHHHHhccCceEEEEec
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+-+..+|....+.|+|||.+++..-
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEec
Confidence 3467888999999999999988763
No 266
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=95 Score=30.85 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=19.6
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHH
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~i 64 (329)
.+.+..|+|+|.|+|.+..-++..+
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHH
Confidence 3568999999999998766666544
No 267
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=26.48 E-value=1.1e+02 Score=26.15 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCcC---CCc----ccCCCHHHHHHHHHh
Q 037735 211 YNTFGSCLVELTKMGILS---KEK----MYNPTPKELEGIIQR 246 (329)
Q Consensus 211 ~~~l~~a~~~l~~eG~i~---~~~----~y~ps~eE~~~~i~~ 246 (329)
-+.+..++..|+..|... +.+ +|.++++|+.++|-+
T Consensus 63 ~e~~~~Il~~Lv~~g~aew~~~~~~~~~I~Wrt~~eWa~~I~~ 105 (139)
T PF05871_consen 63 PEFIREILDELVQKGNAEWIDKSKTRCLIYWRTPEEWADLIYD 105 (139)
T ss_dssp HHHHHHHHHHHHCTTSEEECSTTSCEEEE-SS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeeCCCCEEEEEeCCHHHHHHHHHH
Confidence 468889999999998743 233 899999999988843
No 268
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=26.40 E-value=84 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhcCCcCCCc----ccCCCHHHHHHHHHh
Q 037735 210 FYNTFGSCLVELTKMGILSKEK----MYNPTPKELEGIIQR 246 (329)
Q Consensus 210 ~~~~l~~a~~~l~~eG~i~~~~----~y~ps~eE~~~~i~~ 246 (329)
+|+-+.+-++.|+++|.++++. ....+++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHHh
Confidence 6888888889999999998876 566899998888753
No 269
>PHA03297 envelope glycoprotein L; Provisional
Probab=26.28 E-value=21 Score=30.94 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCceEEEeeeCCCCcccH------HHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 037735 40 VPNTFRIADFGCSTGPNTF------IAVQNIIDSVELKFQHECPSAIEFQVFFNDHS 90 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~------~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp 90 (329)
..++-||++-.||+|+.-- --++++.+.+.-..-+...++||.-+.+.|-+
T Consensus 37 ~gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~ 93 (185)
T PHA03297 37 PGEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPP 93 (185)
T ss_pred CCCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCC
Confidence 5678999999999998432 22344444443222233345777777777644
No 270
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.27 E-value=86 Score=27.49 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCcCCC---c----ccCCCHHHHHHHHH
Q 037735 211 YNTFGSCLVELTKMGILSKE---K----MYNPTPKELEGIIQ 245 (329)
Q Consensus 211 ~~~l~~a~~~l~~eG~i~~~---~----~y~ps~eE~~~~i~ 245 (329)
-+.+..+|.+|+.+|++..- + +|.++++|+...|-
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIy 109 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIY 109 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHH
Confidence 35788899999999986533 2 89999999988773
No 271
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=25.16 E-value=2.3e+02 Score=29.16 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=42.6
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+.+.-.|++.|+|+++==-+++=|-.-....||+. -...-+..-++.|+|||+.+..++
T Consensus 104 d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~---------------------~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 104 DMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTA---------------------HVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cchhccCCCcceeEEEecCccccccCCchhhhhhH---------------------HhhHHHhhHHHHhccCCEEEEEEe
Confidence 57778899999999998888876532111124331 112448888999999999999988
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
+
T Consensus 163 ~ 163 (482)
T KOG2352|consen 163 V 163 (482)
T ss_pred e
Confidence 5
No 272
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=24.14 E-value=2.3e+02 Score=25.46 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=31.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL 101 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l 101 (329)
.--++||+=+|||.+.+..++ +.. -.+++-|.-..-+..+-+++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlS--------RGA--------~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALS--------RGA--------ARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred CCCEEEEecCCccHhHHHHHh--------CCC--------ceEEEEecCHHHHHHHHHHH
Confidence 346899999999999999986 321 36777777665666665543
No 273
>smart00400 ZnF_CHCC zinc finger.
Probab=24.08 E-value=63 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.3
Q ss_pred eEEEeeeCCCCcccHHHHHHH
Q 037735 44 FRIADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~i 64 (329)
-..=++|||.|.+.+.++..+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 456789999999999888744
No 274
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=23.96 E-value=1.4e+02 Score=29.66 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=44.2
Q ss_pred cccccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 115 SFYSSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 115 sFy~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
|+-+.| .|++|+|.++=+=.+-|++. .++....++-.+.++|||++++=
T Consensus 283 si~~~L~~~~~~s~~~~vL~D~~Dwm~~-----------------------------~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 283 SIEEVLRRLPPGSFDRFVLSDHMDWMDP-----------------------------EQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred cHHHHHHhCCCCCeeEEEecchhhhCCH-----------------------------HHHHHHHHHHHHHhCCCCEEEEe
Confidence 554444 58899999999999999874 14456678888999999999999
Q ss_pred ecccCCC
Q 037735 193 MFSVPDG 199 (329)
Q Consensus 193 ~~g~~~~ 199 (329)
.++.+..
T Consensus 334 sa~~~~~ 340 (380)
T PF11899_consen 334 SAAVPPW 340 (380)
T ss_pred eCCCCCC
Confidence 9987653
No 275
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=23.72 E-value=46 Score=30.36 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.0
Q ss_pred eEEEeeeCCCCcccHHHHHH
Q 037735 44 FRIADFGCSTGPNTFIAVQN 63 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ 63 (329)
-+.+|+|.|||.+|+.....
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred hceeeccCCcchHHHHHHhh
Confidence 56799999999999888753
No 276
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.65 E-value=63 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCcCCCc
Q 037735 211 YNTFGSCLVELTKMGILSKEK 231 (329)
Q Consensus 211 ~~~l~~a~~~l~~eG~i~~~~ 231 (329)
=..|.+++.+|+.+|.|+++-
T Consensus 12 G~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 358999999999999876653
No 277
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=21.40 E-value=76 Score=26.74 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc----
Q 037735 156 FVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK---- 231 (329)
Q Consensus 156 ~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~---- 231 (329)
.|..+...|.+||++||-..|+.|..+=+. ......++... ...
T Consensus 9 n~~k~i~~yS~eFe~~Fl~lLr~~hg~krV---------------------------~AN~vYnEyI~-----Dk~HvHM 56 (127)
T PF10357_consen 9 NPGKFIDEYSEEFEKDFLRLLRRRHGTKRV---------------------------NANKVYNEYIQ-----DKDHVHM 56 (127)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHTSS-EE---------------------------EHHHHHHHHTT-----SS----G
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCCCee---------------------------chhHHHHHHhc-----Cccceee
Confidence 455688999999999999999987532111 01112244432 222
Q ss_pred --ccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 232 --MYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 232 --~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
.-..|+-++-..|..+|-.+|...+
T Consensus 57 NaT~W~sLT~FvkyLgr~G~~~Vdete 83 (127)
T PF10357_consen 57 NATRWTSLTEFVKYLGREGKCKVDETE 83 (127)
T ss_dssp GGSS-SSHHHHHHHHTTTTSEEEEEET
T ss_pred cccccchHHHHHHHHhhCCeeEeecCC
Confidence 3346999999999999877776554
No 278
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=21.13 E-value=1.1e+02 Score=30.15 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=39.4
Q ss_pred hccCce-EEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcc--------cCCCH-HHHHHHHHhCCceEE
Q 037735 183 LVPGGL-AALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM--------YNPTP-KELEGIIQRNGNFTI 252 (329)
Q Consensus 183 L~pGG~-l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~--------y~ps~-eE~~~~i~~~g~f~i 252 (329)
--|+|. +....++-.|+.+.. -|. +.|+++|.|+.+++ --..+ ++++++++.+-+|--
T Consensus 189 ~l~DG~~~~~vgYag~NG~pY~---------SIG---r~Li~rG~i~~e~~Smq~Ir~Wl~~nP~~~~~ell~~NpsYVF 256 (355)
T PRK11162 189 DFGDGRPLNFFAYAGKNGHAYR---------SIG---KVLIDRGEVPKEDMSMQAIREWGEKHSEAEVRELLEQNPSFVF 256 (355)
T ss_pred EcCCCCEEEEEEEcCCCCCCcc---------hHH---HHHHHcCCCChhhCCHHHHHHHHHHCCHHHHHHHHhhCCCeEE
Confidence 346776 555555555555532 122 77889999999881 12356 899999998877655
Q ss_pred eEE
Q 037735 253 ERM 255 (329)
Q Consensus 253 ~~~ 255 (329)
-+.
T Consensus 257 Fr~ 259 (355)
T PRK11162 257 FKP 259 (355)
T ss_pred EEE
Confidence 443
No 279
>PF14904 FAM86: Family of unknown function
Probab=20.94 E-value=79 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.3
Q ss_pred hhhHhhhhhhHHhhh--cChHHHHHHHHHHHHH
Q 037735 273 AVAMRAVYEGLVKEH--FGDEFVDKIFNHFATK 303 (329)
Q Consensus 273 ~~~iRa~~e~~~~~~--~g~~~~d~~f~ry~~~ 303 (329)
.++.|++...+++++ .+.+.+|++|+.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 678899999999876 5789999999999763
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=20.78 E-value=78 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=22.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHS 90 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp 90 (329)
+.++|+++|.|||--.+...- .+ -.++...|+|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~--------~~--------~~~v~ltD~~ 118 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL--------LL--------GAEVVLTDLP 118 (248)
T ss_pred cceeEEEecCCccHHHHHHHH--------Hh--------cceeccCCch
Confidence 478899999999943333321 11 2578888887
Done!