Query 037736
Match_columns 377
No_of_seqs 221 out of 1621
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 4.3E-73 9.3E-78 550.5 45.7 357 14-373 50-424 (443)
2 PLN03003 Probable polygalactur 100.0 1.6E-72 3.5E-77 541.8 44.1 369 3-373 10-390 (456)
3 PLN03010 polygalacturonase 100.0 3.1E-72 6.7E-77 537.2 45.4 359 12-373 42-404 (409)
4 PLN02155 polygalacturonase 100.0 2.8E-72 6E-77 536.6 44.7 356 11-373 22-393 (394)
5 PLN02218 polygalacturonase ADP 100.0 2E-71 4.4E-76 536.3 44.4 352 9-372 60-431 (431)
6 PLN02188 polygalacturonase/gly 100.0 5.2E-69 1.1E-73 516.3 44.6 351 14-372 34-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.3E-53 9.3E-58 400.6 30.0 303 49-361 5-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 5.6E-40 1.2E-44 320.5 27.4 266 9-287 75-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 7.5E-25 1.6E-29 207.8 22.2 245 12-279 33-337 (455)
10 PLN02188 polygalacturonase/gly 99.9 4.1E-21 8.9E-26 185.2 28.8 221 76-318 123-377 (404)
11 PLN02793 Probable polygalactur 99.9 3.7E-21 8.1E-26 187.6 27.8 219 76-318 144-397 (443)
12 PLN02218 polygalacturonase ADP 99.9 9.4E-21 2E-25 183.9 26.0 218 76-317 157-410 (431)
13 PF12708 Pectate_lyase_3: Pect 99.9 2.1E-21 4.6E-26 174.8 18.4 207 16-255 1-224 (225)
14 PLN02155 polygalacturonase 99.9 2.5E-20 5.3E-25 179.0 26.5 220 76-319 116-367 (394)
15 PLN03003 Probable polygalactur 99.9 3E-20 6.5E-25 180.0 26.7 220 75-318 113-360 (456)
16 PF00295 Glyco_hydro_28: Glyco 99.9 9.7E-21 2.1E-25 179.7 22.0 218 76-317 61-310 (326)
17 PLN03010 polygalacturonase 99.9 4.1E-19 8.9E-24 171.0 27.7 213 76-318 140-377 (409)
18 PF03718 Glyco_hydro_49: Glyco 99.8 3.1E-17 6.7E-22 157.4 23.8 262 50-345 232-554 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 2.9E-15 6.3E-20 141.1 27.1 39 36-83 1-40 (314)
20 TIGR03805 beta_helix_1 paralle 99.4 8.6E-11 1.9E-15 110.8 20.4 163 107-280 31-203 (314)
21 COG5434 PGU1 Endopygalactoruna 99.3 7.1E-11 1.5E-15 116.7 16.0 154 149-318 237-398 (542)
22 PRK10123 wcaM putative colanic 99.2 2.5E-09 5.5E-14 95.6 18.6 229 11-276 29-281 (464)
23 PF12541 DUF3737: Protein of u 99.0 3.9E-09 8.5E-14 93.6 12.5 125 130-282 92-227 (277)
24 PF13229 Beta_helix: Right han 98.8 5.8E-08 1.3E-12 81.8 12.1 139 129-286 2-144 (158)
25 TIGR03808 RR_plus_rpt_1 twin-a 98.8 2.6E-07 5.6E-12 88.9 16.8 146 129-287 108-291 (455)
26 PF14592 Chondroitinas_B: Chon 98.8 2.2E-06 4.8E-11 82.4 22.0 32 32-68 3-34 (425)
27 PF12541 DUF3737: Protein of u 98.8 1.7E-07 3.6E-12 83.4 13.3 99 132-257 133-231 (277)
28 PF03718 Glyco_hydro_49: Glyco 98.7 7.1E-06 1.5E-10 80.1 22.3 242 49-316 255-552 (582)
29 PF13229 Beta_helix: Right han 98.7 4.2E-07 9.2E-12 76.5 12.1 150 103-276 4-157 (158)
30 COG3866 PelB Pectate lyase [Ca 98.6 1.3E-05 2.8E-10 72.8 20.3 139 77-251 77-229 (345)
31 PF05048 NosD: Periplasmic cop 98.5 6.1E-06 1.3E-10 74.9 16.4 112 129-256 37-150 (236)
32 PF05048 NosD: Periplasmic cop 98.5 5.2E-06 1.1E-10 75.4 15.7 152 129-313 15-168 (236)
33 smart00656 Amb_all Amb_all dom 98.5 1.2E-05 2.6E-10 70.4 16.3 137 157-313 38-189 (190)
34 COG3866 PelB Pectate lyase [Ca 98.5 3E-05 6.5E-10 70.4 18.9 122 130-280 95-229 (345)
35 PF07602 DUF1565: Protein of u 98.4 1.6E-05 3.5E-10 71.7 15.7 173 32-258 14-195 (246)
36 PLN02773 pectinesterase 98.4 8.3E-05 1.8E-09 69.8 20.2 52 27-83 12-63 (317)
37 COG3420 NosD Nitrous oxidase a 98.3 0.00018 4E-09 66.4 20.4 149 98-258 68-222 (408)
38 PF00544 Pec_lyase_C: Pectate 98.2 1.9E-05 4.2E-10 69.7 11.0 76 175-251 73-158 (200)
39 PLN02480 Probable pectinestera 98.1 0.00016 3.4E-09 68.6 16.9 51 27-83 55-106 (343)
40 smart00656 Amb_all Amb_all dom 98.1 0.00031 6.7E-09 61.5 16.9 134 129-279 33-188 (190)
41 PLN02665 pectinesterase family 97.9 0.0021 4.5E-08 61.6 20.7 52 27-83 75-126 (366)
42 PF01095 Pectinesterase: Pecti 97.9 0.00064 1.4E-08 63.7 16.3 48 31-83 10-58 (298)
43 PLN02682 pectinesterase family 97.9 0.0015 3.2E-08 62.4 18.9 48 32-83 81-128 (369)
44 PLN02176 putative pectinestera 97.9 0.0024 5.1E-08 60.6 19.6 53 26-83 45-97 (340)
45 PLN02170 probable pectinestera 97.9 0.0036 7.8E-08 62.5 21.6 53 26-83 231-284 (529)
46 PRK10531 acyl-CoA thioesterase 97.9 0.0027 5.9E-08 61.6 19.9 54 25-83 87-141 (422)
47 PF12708 Pectate_lyase_3: Pect 97.9 0.0017 3.7E-08 58.0 17.8 121 140-284 96-224 (225)
48 PLN02432 putative pectinestera 97.8 0.0025 5.5E-08 59.2 18.9 52 27-83 18-69 (293)
49 PLN02708 Probable pectinestera 97.8 0.0023 5.1E-08 64.7 19.8 159 27-249 248-409 (553)
50 PLN02201 probable pectinestera 97.8 0.0024 5.2E-08 63.9 19.2 53 26-83 212-264 (520)
51 PLN02933 Probable pectinestera 97.8 0.0027 5.8E-08 63.6 19.4 52 27-83 225-276 (530)
52 PLN02506 putative pectinestera 97.8 0.0017 3.7E-08 65.3 17.7 52 27-83 239-290 (537)
53 PLN02304 probable pectinestera 97.7 0.0041 8.9E-08 59.6 19.1 52 27-83 82-133 (379)
54 PLN02468 putative pectinestera 97.7 0.0054 1.2E-07 62.3 20.5 52 27-83 265-316 (565)
55 PLN02497 probable pectinestera 97.7 0.0044 9.6E-08 58.5 18.5 51 27-83 39-90 (331)
56 PLN02484 probable pectinestera 97.7 0.0035 7.6E-08 63.9 19.1 53 27-83 279-331 (587)
57 PLN02916 pectinesterase family 97.7 0.005 1.1E-07 61.2 19.6 53 26-83 193-248 (502)
58 PLN02301 pectinesterase/pectin 97.7 0.0037 8E-08 63.1 18.9 52 27-83 243-294 (548)
59 PLN02745 Putative pectinestera 97.7 0.0036 7.8E-08 63.8 18.9 154 27-218 292-450 (596)
60 PLN02713 Probable pectinestera 97.7 0.0027 6E-08 64.4 17.8 154 26-218 256-418 (566)
61 PLN02488 probable pectinestera 97.7 0.0088 1.9E-07 59.3 20.5 52 27-83 204-255 (509)
62 PLN02634 probable pectinestera 97.7 0.011 2.4E-07 56.4 20.4 52 27-83 63-114 (359)
63 PLN02416 probable pectinestera 97.6 0.0037 8E-08 63.1 17.3 52 27-83 237-288 (541)
64 PF00544 Pec_lyase_C: Pectate 97.6 0.0027 5.8E-08 56.1 14.2 116 133-258 43-188 (200)
65 PLN02990 Probable pectinestera 97.6 0.0074 1.6E-07 61.4 18.9 53 26-83 265-317 (572)
66 PLN02313 Pectinesterase/pectin 97.5 0.0068 1.5E-07 61.9 18.5 52 27-83 282-333 (587)
67 PLN02671 pectinesterase 97.5 0.012 2.5E-07 56.3 18.3 52 27-83 66-117 (359)
68 PLN03043 Probable pectinestera 97.5 0.01 2.2E-07 60.1 18.9 154 26-218 229-391 (538)
69 PLN02314 pectinesterase 97.5 0.0074 1.6E-07 61.7 18.2 52 27-83 285-336 (586)
70 PLN02197 pectinesterase 97.5 0.011 2.4E-07 60.2 18.6 155 27-218 282-442 (588)
71 PLN02995 Probable pectinestera 97.4 0.012 2.6E-07 59.4 18.5 52 27-83 230-283 (539)
72 PLN02217 probable pectinestera 97.4 0.015 3.4E-07 59.8 18.8 211 27-280 257-486 (670)
73 PF01696 Adeno_E1B_55K: Adenov 97.3 0.046 9.9E-07 52.4 19.5 51 19-87 46-98 (386)
74 PF12218 End_N_terminal: N ter 97.2 0.00037 8.1E-09 47.6 3.2 38 24-66 1-38 (67)
75 COG4677 PemB Pectin methyleste 97.1 0.069 1.5E-06 49.5 17.2 219 31-278 92-349 (405)
76 COG3420 NosD Nitrous oxidase a 96.9 0.018 3.8E-07 53.6 12.4 64 129-197 122-192 (408)
77 PRK10123 wcaM putative colanic 96.2 0.19 4.2E-06 45.9 13.8 168 157-343 120-311 (464)
78 PF03211 Pectate_lyase: Pectat 95.9 0.41 8.8E-06 42.4 14.2 55 160-220 62-117 (215)
79 PF01696 Adeno_E1B_55K: Adenov 95.3 2.9 6.2E-05 40.4 18.5 83 158-255 120-204 (386)
80 PF14592 Chondroitinas_B: Chon 95.1 0.51 1.1E-05 46.1 13.3 216 102-343 46-320 (425)
81 PF03211 Pectate_lyase: Pectat 95.0 2.4 5.2E-05 37.6 16.0 132 136-274 61-194 (215)
82 TIGR03804 para_beta_helix para 93.9 0.085 1.8E-06 34.1 3.4 39 179-218 1-39 (44)
83 TIGR03804 para_beta_helix para 93.4 0.14 2.9E-06 33.1 3.8 41 152-197 1-41 (44)
84 PF07602 DUF1565: Protein of u 93.3 6.1 0.00013 35.9 18.9 132 153-316 91-225 (246)
85 PF09251 PhageP22-tail: Salmon 92.5 7.8 0.00017 37.6 15.3 43 209-258 311-353 (549)
86 PLN02665 pectinesterase family 92.1 4.6 9.9E-05 39.0 13.7 84 185-280 186-272 (366)
87 PF08480 Disaggr_assoc: Disagg 91.3 5.7 0.00012 34.1 11.8 66 185-251 33-109 (198)
88 PLN02217 probable pectinestera 89.5 3.8 8.3E-05 42.7 11.2 112 157-280 335-452 (670)
89 PLN02634 probable pectinestera 89.0 8.3 0.00018 37.1 12.3 84 185-280 181-266 (359)
90 PLN02698 Probable pectinestera 89.0 7.3 0.00016 39.3 12.5 39 186-226 298-336 (497)
91 PLN02197 pectinesterase 88.0 9.7 0.00021 39.2 12.8 113 156-281 361-481 (588)
92 PLN02995 Probable pectinestera 87.4 6.2 0.00014 40.2 11.0 80 158-249 311-391 (539)
93 PF08480 Disaggr_assoc: Disagg 86.0 16 0.00034 31.5 10.9 15 237-251 62-76 (198)
94 PLN02698 Probable pectinestera 73.8 72 0.0016 32.3 12.9 140 131-280 265-419 (497)
95 PLN02916 pectinesterase family 72.4 93 0.002 31.5 13.2 111 158-280 276-392 (502)
96 PLN02773 pectinesterase 71.4 95 0.0021 29.5 13.3 114 155-281 98-213 (317)
97 PLN02488 probable pectinestera 66.9 1.5E+02 0.0033 30.0 13.5 111 158-280 283-399 (509)
98 smart00722 CASH Domain present 63.0 76 0.0016 25.2 10.1 68 133-203 73-144 (146)
99 PLN02671 pectinesterase 62.1 1.6E+02 0.0034 28.5 13.4 39 186-226 186-224 (359)
100 PF01095 Pectinesterase: Pecti 57.2 1.5E+02 0.0033 27.8 11.0 16 133-148 84-99 (298)
101 smart00710 PbH1 Parallel beta- 55.9 18 0.00039 19.2 2.9 19 186-204 2-21 (26)
102 PLN02682 pectinesterase family 54.0 2.2E+02 0.0047 27.7 12.3 53 185-249 195-247 (369)
103 PLN02480 Probable pectinestera 51.4 50 0.0011 31.7 6.7 112 157-280 130-252 (343)
104 COG4677 PemB Pectin methyleste 49.7 58 0.0013 30.8 6.6 82 158-249 188-284 (405)
105 PLN02468 putative pectinestera 49.6 2.2E+02 0.0049 29.4 11.5 39 186-226 373-411 (565)
106 PLN02708 Probable pectinestera 45.5 3.3E+02 0.0071 28.1 11.9 83 157-251 356-449 (553)
107 PLN02745 Putative pectinestera 42.2 3.1E+02 0.0066 28.6 11.2 113 157-281 370-488 (596)
108 PF07986 TBCC: Tubulin binding 40.9 1.1E+02 0.0023 24.3 6.3 31 102-141 23-53 (120)
109 PLN02313 Pectinesterase/pectin 40.5 3.3E+02 0.0071 28.3 11.1 79 159-249 362-441 (587)
110 KOG1777 Putative Zn-finger pro 40.4 3.8E+02 0.0083 26.6 11.7 41 35-82 34-74 (625)
111 smart00722 CASH Domain present 39.9 1.9E+02 0.004 22.9 9.7 19 177-195 93-111 (146)
112 PLN02416 probable pectinestera 39.7 3E+02 0.0065 28.3 10.6 81 158-250 316-397 (541)
113 PLN02301 pectinesterase/pectin 38.6 3.2E+02 0.0069 28.2 10.5 41 185-227 350-390 (548)
114 PLN02170 probable pectinestera 36.8 4.2E+02 0.009 27.2 10.9 53 185-249 340-392 (529)
115 PRK09752 adhesin; Provisional 36.8 6.8E+02 0.015 28.4 16.3 38 160-197 122-164 (1250)
116 KOG1777 Putative Zn-finger pro 33.9 69 0.0015 31.5 4.7 16 328-343 585-600 (625)
117 PRK10531 acyl-CoA thioesterase 33.7 3.4E+02 0.0074 26.9 9.5 41 239-279 238-282 (422)
118 PLN02713 Probable pectinestera 33.5 4.2E+02 0.0091 27.4 10.5 112 157-280 338-455 (566)
119 PLN02314 pectinesterase 33.0 4.2E+02 0.0092 27.5 10.6 80 158-249 364-444 (586)
120 PLN02201 probable pectinestera 33.0 5.5E+02 0.012 26.3 11.3 81 158-250 292-373 (520)
121 PF09251 PhageP22-tail: Salmon 32.9 5E+02 0.011 25.7 12.0 23 267-289 263-286 (549)
122 PLN02506 putative pectinestera 32.3 3.9E+02 0.0085 27.4 10.0 111 157-279 317-433 (537)
123 PLN02484 probable pectinestera 31.3 5.2E+02 0.011 26.9 10.9 53 185-249 387-439 (587)
124 PRK09752 adhesin; Provisional 30.7 8.4E+02 0.018 27.7 15.0 60 160-221 97-165 (1250)
125 PF05342 Peptidase_M26_N: M26 30.7 1.2E+02 0.0026 27.7 5.4 99 36-170 143-250 (250)
126 PLN02990 Probable pectinestera 29.9 6E+02 0.013 26.3 11.0 79 159-249 347-426 (572)
127 PLN02933 Probable pectinestera 29.8 5.7E+02 0.012 26.2 10.6 80 158-249 304-384 (530)
128 PLN02432 putative pectinestera 25.0 4.1E+02 0.0088 24.9 8.1 82 185-279 120-204 (293)
129 PLN02497 probable pectinestera 24.9 6.2E+02 0.013 24.2 12.6 40 186-227 150-189 (331)
130 PLN02176 putative pectinestera 22.9 6.8E+02 0.015 24.0 13.1 39 186-226 156-194 (340)
131 PF11699 CENP-C_C: Mif2/CENP-C 20.5 1.1E+02 0.0023 23.0 2.7 18 49-66 57-74 (85)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=4.3e-73 Score=550.52 Aligned_cols=357 Identities=42% Similarity=0.797 Sum_probs=329.8
Q ss_pred CceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC-CC
Q 037736 14 RNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS-KS 92 (377)
Q Consensus 14 ~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~-~~ 92 (377)
++++||+||||+|||++|||+|||+||++||+ ..+|++|+||+|++|++++|.|.||||| +++|+++|+|+++.+ ..
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~-~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~ 127 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS-SKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDV 127 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhc-cCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHH
Confidence 57999999999999999999999999987888 6689999999996599999999999999 999999999999998 88
Q ss_pred cCCCCceecEEEeeeeceEEEeccEEeCCCcccccc---------------cEEEEeecceEEEeeEEeCCCceeEEEeC
Q 037736 93 WKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ---------------AVYFHNCNNLQVKGITIVNSPKSHISINT 157 (377)
Q Consensus 93 ~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~---------------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~ 157 (377)
|+......|+.+.+.+|++|.|.|+|||+|+.||.. ++.|.+|+|++|++++++++|.|++++..
T Consensus 128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~ 207 (443)
T PLN02793 128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTN 207 (443)
T ss_pred ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEc
Confidence 986555679999999999999999999999999942 68999999999999999999999999999
Q ss_pred eecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDK 237 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~ 237 (377)
|++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||++++...+.
T Consensus 208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~ 287 (443)
T PLN02793 208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE 287 (443)
T ss_pred cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999987666788
Q ss_pred EEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCC-CCcceEEEeEEEEeEEEe
Q 037736 238 VEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK-GTSAVNVSEVTYSDVQGS 316 (377)
Q Consensus 238 i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~ni~f~ni~~~ 316 (377)
++||+|+||++.++.+|++||+|.++.|.++||+|+|++|+++.+||.|++.|++....|+ +...+.|+||+|+||+++
T Consensus 288 V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt 367 (443)
T PLN02793 288 VRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGT 367 (443)
T ss_pred EEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEE
Confidence 9999999999999999999999999899999999999999999999999999976544454 456789999999999999
Q ss_pred eCCcceEEEec-CCCceecEEEEeEEEEecCCCCccceeeecccccccccccCCCCCC
Q 037736 317 SADEKAITFDC-SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLT 373 (377)
Q Consensus 317 ~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 373 (377)
...+.++.+.| ++.||+||+|+||++.... +......|.++++...+..+||+|+.
T Consensus 368 ~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~~~~p~~C~~ 424 (443)
T PLN02793 368 SATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSGQVYPPPCFS 424 (443)
T ss_pred EcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECCeEcCCcccc
Confidence 76667899999 9999999999999999776 33557899999999999999999973
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.6e-72 Score=541.79 Aligned_cols=369 Identities=46% Similarity=0.847 Sum_probs=334.0
Q ss_pred ceeeEeeecCCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEE
Q 037736 3 NEVVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVS 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~ 82 (377)
-++|+.++....+.+||+||||+|||++|||+|||+||++||+ ..++++|+||+|++|++++|.|+|||++..+++.++
T Consensus 10 ~~~~~~~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~-~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~ 88 (456)
T PLN03003 10 FSLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCS-GTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQML 88 (456)
T ss_pred eeeeeeeeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhh-ccCCCEEEECCCceEEeeeeEeCCCccCcceeeccC
Confidence 4677888999999999999999999999999999999998897 668999999999779999999999998734888889
Q ss_pred EEEEcCCCCCcCCCCceecEEEeeeeceEEEeccEEeCCCcccccc------cEEEEeecceEEEeeEEeCCCceeEEEe
Q 037736 83 GTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ------AVYFHNCNNLQVKGITIVNSPKSHISIN 156 (377)
Q Consensus 83 G~i~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~------~i~~~~~~nv~i~~~~i~~~~~~~i~~~ 156 (377)
|+|+++....|.+. ...||.+.++++++|.|.|+|||+|+.||.. ++.|.+|+|++|++++++++|.|++++.
T Consensus 89 G~i~ap~~~~w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~ 167 (456)
T PLN03003 89 GKLVAPSKGNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHIS 167 (456)
T ss_pred ceEecCccccccCC-CcceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEe
Confidence 99998655567532 3568999999999999999999999999963 7899999999999999999999999999
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.|++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||+++.++..
T Consensus 168 ~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~ 247 (456)
T PLN03003 168 ECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETA 247 (456)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999876668
Q ss_pred CEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCC--CC-CCcceEEEeEEEEeE
Q 037736 237 KVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGG--CK-GTSAVNVSEVTYSDV 313 (377)
Q Consensus 237 ~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~--~~-~~~~~~i~ni~f~ni 313 (377)
.++||+|+||++.++.+|++||+|.++.|.++||+|+|++|+++.+||.|++.|++.... |. +...+.|+||+|+||
T Consensus 248 ~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 248 TVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNF 327 (456)
T ss_pred eEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeE
Confidence 899999999999999999999999998999999999999999999999999999753221 22 345689999999999
Q ss_pred EEeeCCcceEEEec-CCCceecEEEEeEEEEecCC--CCccceeeecccccccccccCCCCCC
Q 037736 314 QGSSADEKAITFDC-SEEGCFGIKMEQVSITSSVP--GKETTAYCQNAHGTSTSTSPHVGCLT 373 (377)
Q Consensus 314 ~~~~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~~~ 373 (377)
+++.....++.+.| ++.||++|+|+||.+..... +..+.+.|.|+++...+..||++|..
T Consensus 328 ~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~ 390 (456)
T PLN03003 328 IGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390 (456)
T ss_pred EEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence 99877778899999 88999999999999987631 23467999999999999999989975
No 3
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.1e-72 Score=537.18 Aligned_cols=359 Identities=53% Similarity=0.917 Sum_probs=329.5
Q ss_pred CCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCC-CcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC
Q 037736 12 DGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGD-SATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS 90 (377)
Q Consensus 12 ~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~-g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~ 90 (377)
..++.+||+||||++||++|||+|||+||++||. ..+ +++|+||+|++|++++|.|++||++++++|+++|+|+++.+
T Consensus 42 ~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~-~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d 120 (409)
T PLN03010 42 VNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCG-GEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSN 120 (409)
T ss_pred CCCcEEeeeecCcCCCCCcccHHHHHHHHHHHcc-CCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCC
Confidence 3678999999999999999999999999987776 312 37999999966999999999999855899999999999999
Q ss_pred -CCcCCCCceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEE
Q 037736 91 -KSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHID 169 (377)
Q Consensus 91 -~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~ 169 (377)
+.|+......|+.+.+.+|++|.|.|+|||+|+.||. .+.|.+|+|++|++++++++|.|++++..|++++|++++|.
T Consensus 121 ~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~ 199 (409)
T PLN03010 121 IVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINIL 199 (409)
T ss_pred hhhccCCCCcceEEEecccccEEeeceEEeCCCccccc-eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEe
Confidence 8897444456899999999999999999999999997 79999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEe
Q 037736 170 SPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFT 249 (377)
Q Consensus 170 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~ 249 (377)
++..++|+||||+.+|+||+|+||++.++||||++++++.++.|+++.|.++||++|||++..++...++||+|+||++.
T Consensus 200 a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~ 279 (409)
T PLN03010 200 APETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFN 279 (409)
T ss_pred CCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEe
Confidence 98888999999999999999999999999999999999999999999999999999999987766678999999999999
Q ss_pred CCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCC-CCcceEEEeEEEEeEEEeeCCcceEEEec-
Q 037736 250 GTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK-GTSAVNVSEVTYSDVQGSSADEKAITFDC- 327 (377)
Q Consensus 250 ~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~ni~f~ni~~~~~~~~~~~i~~- 327 (377)
++.+|++||+|.++.|.++||+|+||+|+++++||.|++.|++....|. +...+.|+||+|+||+++...+.++.|.|
T Consensus 280 ~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs 359 (409)
T PLN03010 280 QTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCS 359 (409)
T ss_pred CCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeC
Confidence 9999999999999999999999999999999999999999987554444 56789999999999999987778999999
Q ss_pred CCCceecEEEEeEEEEecCCCCccceeeecccccccccccCCCCCC
Q 037736 328 SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLT 373 (377)
Q Consensus 328 ~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 373 (377)
+..||+||+|+||.+..+. +..+...|.++++...+..+|++|+-
T Consensus 360 ~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 360 AITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred CCCCEeceEEEEEEEEecC-CCccceEeeCccccccCCCCCCcccc
Confidence 8899999999999999776 44568899999999999999999974
No 4
>PLN02155 polygalacturonase
Probab=100.00 E-value=2.8e-72 Score=536.62 Aligned_cols=356 Identities=42% Similarity=0.791 Sum_probs=325.7
Q ss_pred cCCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC
Q 037736 11 GDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS 90 (377)
Q Consensus 11 ~~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~ 90 (377)
...++.+||+||||++||++|+|+|||+||++||+ ..+|++|+||+| .|++++|.|+||||| +++|+++|+|+++.+
T Consensus 22 ~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~-~~gGg~v~vP~G-~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d 98 (394)
T PLN02155 22 SSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACG-SASSATVVVPTG-TFLLKVITFGGPCKS-KITFQVAGTVVAPED 98 (394)
T ss_pred ccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcc-cCCCeEEEECCC-cEEEEEEEEcccCCC-CceEEEeeEEECccc
Confidence 45679999999999999999999999999987888 668999999999 699999999999999 999999999998877
Q ss_pred -CCcCCCCceecEEEeeeeceEEEeccEEeCCCcccccc------------cEEEEeecceEEEeeEEeCCCceeEEEeC
Q 037736 91 -KSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ------------AVYFHNCNNLQVKGITIVNSPKSHISINT 157 (377)
Q Consensus 91 -~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~------------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~ 157 (377)
..|. ....|+.+.+.+++.|.| |+|||+|+.||.. ++.|.+|++++|++++++++|.|++++..
T Consensus 99 ~~~~~--~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~ 175 (394)
T PLN02155 99 YRTFG--NSGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNG 175 (394)
T ss_pred ccccc--ccceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEEC
Confidence 6664 224689999999999999 9999999999953 58999999999999999999999999999
Q ss_pred eecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDK 237 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~ 237 (377)
|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||++++...+.
T Consensus 176 ~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~ 255 (394)
T PLN02155 176 CTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDG 255 (394)
T ss_pred eeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999987655789
Q ss_pred EEEEEEEceEEeCCceeEEEEecCC-CCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCC-CCcceEEEeEEEEeEEE
Q 037736 238 VEEVHVRNCNFTGTQNGARIKTSPG-GSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK-GTSAVNVSEVTYSDVQG 315 (377)
Q Consensus 238 i~ni~i~n~~~~~~~~gi~i~~~~~-~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~ni~f~ni~~ 315 (377)
++||+|+||+|.++.+|++||+|.+ ++|.++||+|+|++|+++..||.|++.|++....|+ +...+.|+||+|+||++
T Consensus 256 V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~g 335 (394)
T PLN02155 256 VENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQG 335 (394)
T ss_pred EEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEE
Confidence 9999999999999999999999865 689999999999999999999999999986544454 44568999999999999
Q ss_pred eeCCcceEEEec-CCCceecEEEEeEEEEecCCCCccceeeecccccccccccCCCCCC
Q 037736 316 SSADEKAITFDC-SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLT 373 (377)
Q Consensus 316 ~~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 373 (377)
+.....++.+.| ++.||++|+|+||.+.... +.++.++|.++++...+..+|++|+.
T Consensus 336 t~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 336 TSATQEAMKLVCSKSSPCTGITLQDIKLTYNK-GTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred EecCCceEEEEeCCCCCEEEEEEEeeEEEecC-CCccCcEEeccEeEEcccCCcccccC
Confidence 987667899999 8999999999999999875 55568999999999999999999974
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2e-71 Score=536.34 Aligned_cols=352 Identities=43% Similarity=0.777 Sum_probs=322.4
Q ss_pred eecCCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcC
Q 037736 9 GIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAP 88 (377)
Q Consensus 9 ~~~~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~ 88 (377)
...+.++.+||+||||+|||++|||+|||+||++||+ ..++++|+||+|++|+++++.|+||||+ +++|+++|+|+++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs-~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s 137 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACS-SNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSAS 137 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhh-cCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeC
Confidence 4556789999999999999999999999999988888 6688899999996699999999999999 9999999999999
Q ss_pred CC-CCcCCCCceecEEEeeeeceEEEec--cEEeCCCcccccc---------------cEEEEeecceEEEeeEEeCCCc
Q 037736 89 DS-KSWKQCGSQCWLSLYDVQGLSIDGS--GTIDGNGRGWWNQ---------------AVYFHNCNNLQVKGITIVNSPK 150 (377)
Q Consensus 89 ~~-~~~~~~~~~~~i~~~~~~ni~I~G~--g~idg~g~~~~~~---------------~i~~~~~~nv~i~~~~i~~~~~ 150 (377)
.+ ++|+ ....|+.+.+.+|++|.|. |+|||+|+.||.. ++.|.+|+|++|++++++++|.
T Consensus 138 ~d~~~y~--~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~ 215 (431)
T PLN02218 138 QKRSDYK--DISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ 215 (431)
T ss_pred CChhhcc--ccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC
Confidence 88 8886 3457899999999999996 9999999999952 5889999999999999999999
Q ss_pred eeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccC
Q 037736 151 SHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLG 230 (377)
Q Consensus 151 ~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~ 230 (377)
|++++..|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||++
T Consensus 216 w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g 295 (431)
T PLN02218 216 IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLG 295 (431)
T ss_pred EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCC-CCcceEEEeEE
Q 037736 231 LDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK-GTSAVNVSEVT 309 (377)
Q Consensus 231 ~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~ni~ 309 (377)
++...+.++||+|+||++.++.+|++||+|.++.|.++||+|+|++|+++.+||.|++.|++... |+ +.....|+||+
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~-~~~~~s~v~I~nI~ 374 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSK-CTSQQSAVQVKNVV 374 (431)
T ss_pred CCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCC-CCCCCCCeEEEEEE
Confidence 76557899999999999999999999999999999999999999999999999999999986532 43 45678999999
Q ss_pred EEeEEEeeCCcceEEEec-CCCceecEEEEeEEEEecCCCCccceeeecccccccccccCCCCC
Q 037736 310 YSDVQGSSADEKAITFDC-SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCL 372 (377)
Q Consensus 310 f~ni~~~~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 372 (377)
|+||+++.....++.+.| ++.||+||+|+||.+... ...|.++.+...+..+| .|+
T Consensus 375 ~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 375 YRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC-CCC
Confidence 999999977667899999 889999999999999742 46899999999988665 774
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=5.2e-69 Score=516.34 Aligned_cols=351 Identities=39% Similarity=0.681 Sum_probs=314.2
Q ss_pred CceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC-CC
Q 037736 14 RNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS-KS 92 (377)
Q Consensus 14 ~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~-~~ 92 (377)
.+.+||+||||+|||++|||+|||+||++||+ ..+|++|+||+| +|+++++.|+|||++ ...|.+ +|+++.+ ++
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~-~~Ggg~V~vP~G-~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACA-STGAVTLLIPPG-TYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSR 108 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhc-cCCCeEEEECCC-eEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHH
Confidence 47899999999999999999999999987887 668889999999 799999999999865 333433 8888888 88
Q ss_pred cCCCCceecEEEeeeeceEEEeccEEeCCCcccccc--------------cEEEEeecceEEEeeEEeCCCceeEEEeCe
Q 037736 93 WKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ--------------AVYFHNCNNLQVKGITIVNSPKSHISINTC 158 (377)
Q Consensus 93 ~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~--------------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~ 158 (377)
|. ....|+.+..++|++|.|.|+|||+|+.||.. ++.|.+|+|++|++++++++|.|++++..|
T Consensus 109 y~--~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~ 186 (404)
T PLN02188 109 YG--SGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVEC 186 (404)
T ss_pred CC--CccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcc
Confidence 86 23457888889999999999999999999941 789999999999999999999999999999
Q ss_pred ecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCE
Q 037736 159 NGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKV 238 (377)
Q Consensus 159 ~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i 238 (377)
++++|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||.|..+||++|||++++...+.+
T Consensus 187 ~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V 266 (404)
T PLN02188 187 RNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDV 266 (404)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcE
Confidence 99999999999988889999999999999999999999999999999999999999999999999999998876667889
Q ss_pred EEEEEEceEEeCCceeEEEEecCC--CCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCC--CCcceEEEeEEEEeEE
Q 037736 239 EEVHVRNCNFTGTQNGARIKTSPG--GSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK--GTSAVNVSEVTYSDVQ 314 (377)
Q Consensus 239 ~ni~i~n~~~~~~~~gi~i~~~~~--~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~i~ni~f~ni~ 314 (377)
+||+|+||++.++.+|++||+|.+ +.|.++||+|+|++|+++..||.|++.|++... |. ....+.|+||+|+||+
T Consensus 267 ~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~~nI~ 345 (404)
T PLN02188 267 TGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYFKNIR 345 (404)
T ss_pred EEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEEEEEE
Confidence 999999999999999999999875 358999999999999999999999999875322 22 2346899999999999
Q ss_pred EeeCCcceEEEec-CCCceecEEEEeEEEEecCCCCccceeeecccccccccccCCCCC
Q 037736 315 GSSADEKAITFDC-SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCL 372 (377)
Q Consensus 315 ~~~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 372 (377)
++.....++.+.| ++.||++|+|+||++..........+.|.++++...+..+||+|-
T Consensus 346 gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 346 GTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 9987667899999 899999999999999876433445789999999999999999993
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.3e-53 Score=400.60 Aligned_cols=303 Identities=42% Similarity=0.750 Sum_probs=263.0
Q ss_pred CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC-CCcCCCCceecEEEeeeeceEEEeccEEeCCCccccc
Q 037736 49 DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS-KSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWN 127 (377)
Q Consensus 49 ~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~-~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~ 127 (377)
++++|+||+| +|+++++.|++++.+ ++++.++|++.+... ..+. ...+|.+.+++|++|.|.|+|||+|+.||+
T Consensus 5 ~~~~v~vP~g-~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~---~~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 5 GGGTVVVPAG-TYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGP---NSALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp EEESEEESTS-TEEEEETSEETECET-TCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred cCCEEEECCC-CeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCC---ccEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 5779999999 699999999654447 899999999988755 4443 278899999999999999999999999996
Q ss_pred c-------------cEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeE
Q 037736 128 Q-------------AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSS 194 (377)
Q Consensus 128 ~-------------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~ 194 (377)
. ++.|..|++++|++++++++|.|++++..|++++|++++|.++...+++|||++.+|+||+|+||+
T Consensus 80 ~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~ 159 (326)
T PF00295_consen 80 GSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCF 159 (326)
T ss_dssp SCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEE
T ss_pred cccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEee
Confidence 3 799999999999999999999999999999999999999999877799999999999999999999
Q ss_pred EEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEe
Q 037736 195 IKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEH 274 (377)
Q Consensus 195 i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~n 274 (377)
++++||||+++++..||+|+||+|..+||++|||++..+....++||+|+||++.++.+|++||+++++.|.++||+|+|
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~n 239 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFEN 239 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEE
T ss_pred cccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEE
Confidence 99999999999988899999999999999999999854333569999999999999999999999998899999999999
Q ss_pred EEEeccCccEEEEeeecCCCCCCC-CCcceEEEeEEEEeEEEeeCCcceEEEec-CCCceecEEEEeEEEEecCCCCccc
Q 037736 275 ITLIASKNPIIIDQHYCVGGGGCK-GTSAVNVSEVTYSDVQGSSADEKAITFDC-SEEGCFGIKMEQVSITSSVPGKETT 352 (377)
Q Consensus 275 i~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~ni~f~ni~~~~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~ 352 (377)
++|+++.+|+.|.+.|.+. ..++ +...+.|+||+|+||+++.....++.+.| +..||+||+|+||++.. + ...
T Consensus 240 i~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g---~~~ 314 (326)
T PF00295_consen 240 ITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G---KKP 314 (326)
T ss_dssp EEEEEESEEEEEEEEECTT-EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---BSE
T ss_pred EEecCCceEEEEEeccccc-cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---CcC
Confidence 9999999999999998762 2222 34567999999999999987767899999 89999999999999997 3 457
Q ss_pred eeeeccccc
Q 037736 353 AYCQNAHGT 361 (377)
Q Consensus 353 ~~c~~~~~~ 361 (377)
..|+++..+
T Consensus 315 ~~c~nv~~~ 323 (326)
T PF00295_consen 315 AQCKNVPSG 323 (326)
T ss_dssp SEEBSCCTT
T ss_pred eEEECCCCC
Confidence 899998754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.6e-40 Score=320.46 Aligned_cols=266 Identities=33% Similarity=0.550 Sum_probs=229.1
Q ss_pred eecCCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEE-E-EEE
Q 037736 9 GIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVS-G-TIV 86 (377)
Q Consensus 9 ~~~~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~-G-~i~ 86 (377)
..+...+.++|.+|||++||.+|+++|||+||++ |+ .++|++|+||+| +|+.++|.| || +++|+++ | +|+
T Consensus 75 ~~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca-~a~Gg~V~lPaG-tylsg~l~L----KS-~~~L~l~egatl~ 146 (542)
T COG5434 75 KTAATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CA-SAGGGTVLLPAG-TYLSGPLFL----KS-NVTLHLAEGATLL 146 (542)
T ss_pred ccccccceeeeccccccccCCccCHHHHHHHHHh-hh-hhcCceEEECCc-eeEeeeEEE----ec-ccEEEecCCceee
Confidence 3466689999999999999999999999999965 55 568999999999 899999999 89 9999995 6 998
Q ss_pred cCCC-CCcCC---------C-------C-------------ceecEEEeeeeceE-EEeccEEeCCC---cc-cccc---
Q 037736 87 APDS-KSWKQ---------C-------G-------------SQCWLSLYDVQGLS-IDGSGTIDGNG---RG-WWNQ--- 128 (377)
Q Consensus 87 ~~~~-~~~~~---------~-------~-------------~~~~i~~~~~~ni~-I~G~g~idg~g---~~-~~~~--- 128 (377)
.+.+ .+|+. . . ...++.....+|.. |.|.+++++++ -. ||..
T Consensus 147 ~~~~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~ 226 (542)
T COG5434 147 ASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGA 226 (542)
T ss_pred CCCChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccc
Confidence 8888 77762 0 0 01222233345555 88888998864 12 5522
Q ss_pred -------------cEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEE
Q 037736 129 -------------AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSI 195 (377)
Q Consensus 129 -------------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i 195 (377)
.+.+..|.|+.+++++|.+++.|++|+..|++++++|++|.+.... ++|||++.+|+||+|++|+|
T Consensus 227 ~~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~f 305 (542)
T COG5434 227 VETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRF 305 (542)
T ss_pred hhhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEE
Confidence 6788999999999999999999999999999999999999997665 99999999999999999999
Q ss_pred EeCCceEEEcCC-----------ceeEEEEceeecCCce-eEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC
Q 037736 196 KSGDDCVAINGG-----------SSNINITGVACGPGHG-ISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG 263 (377)
Q Consensus 196 ~~~dD~i~i~s~-----------~~nv~i~n~~~~~~~g-i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~ 263 (377)
.++||||+++++ ++|+.|+||++..+|| +.+|+++ .++++||++|||.|.++.+|++||+..++
T Consensus 306 dtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~~~~d~GLRikt~~~~ 381 (542)
T COG5434 306 DTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVMDNTDRGLRIKTNDGR 381 (542)
T ss_pred ecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeeeccCcceeeeeeeccc
Confidence 999999999995 5899999999999987 8889987 78999999999999999999999999999
Q ss_pred CceEEeEEEEeEEEeccCccEEEE
Q 037736 264 SGYARRISFEHITLIASKNPIIID 287 (377)
Q Consensus 264 ~g~i~nI~~~ni~~~~~~~~i~i~ 287 (377)
+|.++||+|+++.|.++..+..+.
T Consensus 382 gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 382 GGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred ceeEEEEEEecccccCcccceeee
Confidence 999999999999999986544443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=7.5e-25 Score=207.76 Aligned_cols=245 Identities=18% Similarity=0.222 Sum_probs=176.3
Q ss_pred CCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEE-EEEEcCCC
Q 037736 12 DGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVS-GTIVAPDS 90 (377)
Q Consensus 12 ~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~-G~i~~~~~ 90 (377)
.+.+.+++++|||++||++|+|+|||+||++|.+ ++++|.||+| +|+.+++.| ++ +++|.++ |.....
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~---gG~tV~Lp~G-~Y~~G~L~L----~s-pltL~G~~gAt~~v-- 101 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEAAR---AQTPLALPPG-VYRTGPLRL----PS-GAQLIGVRGATRLV-- 101 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc---CCCEEEECCC-ceecccEEE----CC-CcEEEecCCcEEEE--
Confidence 4567799999999999999999999999987654 5789999999 799999999 77 8999887 332100
Q ss_pred CCcCCCCceecEEEeeeeceEEEeccEEeCCCccccc--ccEEEEeecceEEEeeEEeCCCceeEEEeCee---------
Q 037736 91 KSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWN--QAVYFHNCNNLQVKGITIVNSPKSHISINTCN--------- 159 (377)
Q Consensus 91 ~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~--~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~--------- 159 (377)
+. +...++....+++++|+|. +|++.|..|.. .+|++..|++++|++++|.++..|++.+..|+
T Consensus 102 --Id--G~~~lIiai~A~nVTIsGL-tIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~ 176 (455)
T TIGR03808 102 --FT--GGPSLLSSEGADGIGLSGL-TLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTIT 176 (455)
T ss_pred --Ec--CCceEEEEecCCCeEEEee-EEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEe
Confidence 00 1245665667999999997 99999876543 28899999999999999999988999999999
Q ss_pred -------------cEEEEEEEEECCCC--------------------------------CCCCCeeeccCcccEEEEeeE
Q 037736 160 -------------GVSVSNIHIDSPED--------------------------------SPNTDGIDISFSTQVNILDSS 194 (377)
Q Consensus 160 -------------nv~I~~~~i~~~~~--------------------------------~~~~DGi~~~~s~nv~I~n~~ 194 (377)
+++|++.+|....+ ....+||+++.+.+++|++++
T Consensus 177 g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~ 256 (455)
T TIGR03808 177 QIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNR 256 (455)
T ss_pred ccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCE
Confidence 66666666664332 234667777777777777777
Q ss_pred EEeCC-ceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC--CceEEeEE
Q 037736 195 IKSGD-DCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG--SGYARRIS 271 (377)
Q Consensus 195 i~~~d-D~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~--~g~i~nI~ 271 (377)
++..+ |+|.+.+ ++|++|+++.|..-.-..+-++ ...+.-.|+|+++.+...|+++....+. ...+..=.
T Consensus 257 I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~ 329 (455)
T TIGR03808 257 IRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNI 329 (455)
T ss_pred EeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEEEEecce
Confidence 77777 7777777 6677777777753211122111 1112245667777777777777755432 34455556
Q ss_pred EEeEEEec
Q 037736 272 FEHITLIA 279 (377)
Q Consensus 272 ~~ni~~~~ 279 (377)
++|++-++
T Consensus 330 irn~~~~~ 337 (455)
T TIGR03808 330 IRNLIPKR 337 (455)
T ss_pred eeccccCC
Confidence 66666554
No 10
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.90 E-value=4.1e-21 Score=185.18 Aligned_cols=221 Identities=16% Similarity=0.263 Sum_probs=176.4
Q ss_pred ceEEEEEEEEEcCCCCCcCC---------CCceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEe
Q 037736 76 SVNIQVSGTIVAPDSKSWKQ---------CGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIV 146 (377)
Q Consensus 76 ~v~l~~~G~i~~~~~~~~~~---------~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~ 146 (377)
+++|.+.|+|.+....+|.. ...+.++.+.+++|+.|+|.-..+ +++| .+++..|+|++|+++++.
T Consensus 123 ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~n---Sp~w--~i~~~~~~~v~i~~v~I~ 197 (404)
T PLN02188 123 GLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN---SKFF--HIALVECRNFKGSGLKIS 197 (404)
T ss_pred eEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEc---CCCe--EEEEEccccEEEEEEEEe
Confidence 88899899998876666641 123457889999999999954433 3445 899999999999999998
Q ss_pred CC----CceeEEEeCeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcC--------CceeEEE
Q 037736 147 NS----PKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAING--------GSSNINI 213 (377)
Q Consensus 147 ~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s--------~~~nv~i 213 (377)
++ ...+|++..|++|+|+|++|.+ ..|+|.+. .++||+|+||.+..++ +|+++| +.+||+|
T Consensus 198 ~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~gh-GisiGSlG~~~~~~~V~nV~v 271 (404)
T PLN02188 198 APSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPGH-GISVGSLGRYPNEGDVTGLVV 271 (404)
T ss_pred CCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCCC-cEEeCCCCCCCcCCcEEEEEE
Confidence 74 3479999999999999999998 45788886 4789999999997775 699987 2699999
Q ss_pred EceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCC----------CCceEEeEEEEeEEEecc-C
Q 037736 214 TGVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPG----------GSGYARRISFEHITLIAS-K 281 (377)
Q Consensus 214 ~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~----------~~g~i~nI~~~ni~~~~~-~ 281 (377)
+||++.++ +|++|++....+..+.++||+|+|++|.+...++.|...+. ....|+||+|+|++.+.. .
T Consensus 272 ~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~ 351 (404)
T PLN02188 272 RDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQ 351 (404)
T ss_pred EeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCc
Confidence 99999876 69999886433335789999999999999999999986432 135689999999999875 3
Q ss_pred ccEEEEeeecCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 037736 282 NPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSA 318 (377)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~ 318 (377)
.++.+. + .+..+++||+|+||+++..
T Consensus 352 ~a~~l~---c--------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 352 VAVLLK---C--------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred eEEEEE---E--------CCCCCEeeEEEEeeEEEec
Confidence 455554 2 2456899999999999754
No 11
>PLN02793 Probable polygalacturonase
Probab=99.90 E-value=3.7e-21 Score=187.57 Aligned_cols=219 Identities=18% Similarity=0.312 Sum_probs=177.0
Q ss_pred ceEEEEEEEEEcCCCCCcCCC----------CceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEE
Q 037736 76 SVNIQVSGTIVAPDSKSWKQC----------GSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITI 145 (377)
Q Consensus 76 ~v~l~~~G~i~~~~~~~~~~~----------~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i 145 (377)
+++|.+.|+|.+....+|... ..+.++.+.+++|++|+|..+.+.. .| .+++.+|+|++|+++++
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~~--~i~~~~~~nv~i~~l~I 218 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---QM--HIAFTNCRRVTISGLKV 218 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---Ce--EEEEEccCcEEEEEEEE
Confidence 899999999987765666421 1345789999999999996555432 34 89999999999999999
Q ss_pred eCC----CceeEEEeCeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcC--------CceeEE
Q 037736 146 VNS----PKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAING--------GSSNIN 212 (377)
Q Consensus 146 ~~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s--------~~~nv~ 212 (377)
.++ ...+|++..|+||+|+|++|.+ ..|+|.+. .|+||+|+||.+..++ +|+++| +.+||+
T Consensus 219 ~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~ 292 (443)
T PLN02793 219 IAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSNSWSEVRDIT 292 (443)
T ss_pred ECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcCCCCcEEEEE
Confidence 874 3579999999999999999998 56778885 5899999999998876 699988 268999
Q ss_pred EEceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC----------CceEEeEEEEeEEEecc-
Q 037736 213 ITGVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG----------SGYARRISFEHITLIAS- 280 (377)
Q Consensus 213 i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~----------~g~i~nI~~~ni~~~~~- 280 (377)
|+||++.++ +|++|++... ..+.++||+|+|++|.+..+++.|...+.. ...|+||+|+|++.+..
T Consensus 293 v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~ 370 (443)
T PLN02793 293 VDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSAT 370 (443)
T ss_pred EEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcc
Confidence 999999875 7999988642 257899999999999999999999875532 23589999999998875
Q ss_pred CccEEEEeeecCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 037736 281 KNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSA 318 (377)
Q Consensus 281 ~~~i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~ 318 (377)
..++.+. | .+..+++||+|+||+++..
T Consensus 371 ~~ai~l~---c--------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 371 EEAIKFA---C--------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred cccEEEE---e--------CCCCCEeeEEEEeeEEEec
Confidence 3456665 2 2456899999999999854
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.88 E-value=9.4e-21 Score=183.93 Aligned_cols=218 Identities=16% Similarity=0.298 Sum_probs=174.4
Q ss_pred ceEEEEE--EEEEcCCCCCcCCC----------CceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEee
Q 037736 76 SVNIQVS--GTIVAPDSKSWKQC----------GSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGI 143 (377)
Q Consensus 76 ~v~l~~~--G~i~~~~~~~~~~~----------~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~ 143 (377)
+++|.+. |+|.+....+|... ..+.++.+.+++|+.|+|.-..+ ++.| .+++.+|+|++|+++
T Consensus 157 ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~n---Sp~w--~i~~~~~~nV~i~~v 231 (431)
T PLN02218 157 NLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRN---AQQI--QISIEKCSNVQVSNV 231 (431)
T ss_pred EEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEc---CCCE--EEEEEceeeEEEEEE
Confidence 8899886 89987665666421 13456889999999999954433 3344 899999999999999
Q ss_pred EEeCC----CceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccC-cccEEEEeeEEEeCCceEEEcCC--------cee
Q 037736 144 TIVNS----PKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISF-STQVNILDSSIKSGDDCVAINGG--------SSN 210 (377)
Q Consensus 144 ~i~~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~s~--------~~n 210 (377)
++.++ ...+|++..|+||+|+|++|.+ ..|.|.+.+ |+||+|+||.+..++ +|+++|. .+|
T Consensus 232 ~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~n 305 (431)
T PLN02218 232 VVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSG 305 (431)
T ss_pred EEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEE
Confidence 99874 3579999999999999999998 457788864 889999999998765 6999882 579
Q ss_pred EEEEceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC---------CceEEeEEEEeEEEecc
Q 037736 211 INITGVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG---------SGYARRISFEHITLIAS 280 (377)
Q Consensus 211 v~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~---------~g~i~nI~~~ni~~~~~ 280 (377)
|+|+||++.++ +|++|++.. +..+.++||+|+|++|.+..+++.|...+.. ...|+||+|+|++.+..
T Consensus 306 V~v~n~~~~~t~nGvRIKT~~--Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa 383 (431)
T PLN02218 306 VTVDGAKLSGTDNGVRIKTYQ--GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSA 383 (431)
T ss_pred EEEEccEEecCCcceEEeecC--CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEec
Confidence 99999999875 699998864 2358999999999999999999999866532 23589999999999865
Q ss_pred -CccEEEEeeecCCCCCCCCCcceEEEeEEEEeEEEee
Q 037736 281 -KNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSS 317 (377)
Q Consensus 281 -~~~i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~ 317 (377)
..++.+. | .+..+++||+|+||.++.
T Consensus 384 ~~~ai~l~---c--------s~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 384 SDVAITFN---C--------SKNYPCQGIVLDNVNIKG 410 (431)
T ss_pred CCcEEEEE---E--------CCCCCEeeEEEEeEEEEC
Confidence 3455555 2 245689999999999974
No 13
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=2.1e-21 Score=174.83 Aligned_cols=207 Identities=25% Similarity=0.367 Sum_probs=106.4
Q ss_pred eEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeee-eeeeCCCCCcceEEEEEE----EEEcCCC
Q 037736 16 TFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKS-TTFRGPCKSNSVNIQVSG----TIVAPDS 90 (377)
Q Consensus 16 ~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~-l~l~~~~~s~~v~l~~~G----~i~~~~~ 90 (377)
.+||+||||+|||++|||+|||+||+++.+ .++++||||+| +|++.. |.+ ++ +++|+++| .+.....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~--~~g~~v~~P~G-~Y~i~~~l~~----~s-~v~l~G~g~~~~~~~~~~~ 72 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA--AGGGVVYFPPG-TYRISGTLII----PS-NVTLRGAGGNSTILFLSGS 72 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS--TTSEEEEE-SE-EEEESS-EEE-----T-TEEEEESSTTTEEEEECTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc--CCCeEEEEcCc-EEEEeCCeEc----CC-CeEEEccCCCeeEEEecCc
Confidence 489999999999999999999999954433 48999999999 799987 888 78 99999974 3332222
Q ss_pred -CCcCCCCceecEEEee--------eeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCceeEEEeCeecE
Q 037736 91 -KSWKQCGSQCWLSLYD--------VQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGV 161 (377)
Q Consensus 91 -~~~~~~~~~~~i~~~~--------~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv 161 (377)
..+. .......+.. .+|++|.|.+...... ...+.+..+.++.|+++++.++...++.+..+...
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~~~~----~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~ 146 (225)
T PF12708_consen 73 GDSFS--VVPGIGVFDSGNSNIGIQIRNLTIDGNGIDPNNN----NNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDY 146 (225)
T ss_dssp TSTSC--CEEEEEECCSCSCCEEEEEEEEEEEETCGCE-SC----EEEEEETTEEEEEEEEEEEES-SS-SEEEECCEEC
T ss_pred ccccc--cccceeeeecCCCCceEEEEeeEEEcccccCCCC----ceEEEEEeCCeEEEEeEEEEccCccEEEEEccccC
Confidence 2221 0011111111 3444444432111100 01455556666666666666665555555533332
Q ss_pred EEEEEEEECCCCCCCCCeeeccC-cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecC--CceeEeeccCCCCCCCCE
Q 037736 162 SVSNIHIDSPEDSPNTDGIDISF-STQVNILDSSIKSGDDCVAINGGSSNINITGVACGP--GHGISVGSLGLDGADDKV 238 (377)
Q Consensus 162 ~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~--~~gi~igs~~~~~~~~~i 238 (377)
.+.+.... .++.+.. +.++.+.+|.+..+++++. .+.+++.++||.+.. ..|+.+...
T Consensus 147 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~i~n~~~~~~~~~gi~i~~~--------- 207 (225)
T PF12708_consen 147 RIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGII--LGNNNITISNNTFEGNCGNGINIEGG--------- 207 (225)
T ss_dssp EEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEE--CEEEEEEEECEEEESSSSESEEEEEC---------
T ss_pred cEeecccc--------eeeeeccceeEEEECCccccCCCceeE--eecceEEEEeEEECCccceeEEEECC---------
Confidence 22221111 0122221 2345555665555555522 122455555555543 234444221
Q ss_pred EEEEEEceEEeCCceeE
Q 037736 239 EEVHVRNCNFTGTQNGA 255 (377)
Q Consensus 239 ~ni~i~n~~~~~~~~gi 255 (377)
.+++++|+++.++..|+
T Consensus 208 ~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 SNIIISNNTIENCDDGI 224 (225)
T ss_dssp SEEEEEEEEEESSSEEE
T ss_pred eEEEEEeEEEECCccCc
Confidence 12555555555554443
No 14
>PLN02155 polygalacturonase
Probab=99.88 E-value=2.5e-20 Score=179.03 Aligned_cols=220 Identities=14% Similarity=0.230 Sum_probs=173.2
Q ss_pred ceEEEEEEEEEcCCCCCcCCC-------CceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCC
Q 037736 76 SVNIQVSGTIVAPDSKSWKQC-------GSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNS 148 (377)
Q Consensus 76 ~v~l~~~G~i~~~~~~~~~~~-------~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~ 148 (377)
+++|.+ |+|.+....+|... ....++.+.+++|+.|+|.-..+ ++.| .+++.+|+|++|+++++.++
T Consensus 116 ~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~n---Sp~w--~i~~~~~~nv~i~~v~I~~p 189 (394)
T PLN02155 116 RFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMN---SQVS--HMTLNGCTNVVVRNVKLVAP 189 (394)
T ss_pred CCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEc---CCCe--EEEEECeeeEEEEEEEEECC
Confidence 788887 88876655555410 12356889999999999954433 3344 89999999999999999874
Q ss_pred C----ceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccC-cccEEEEeeEEEeCCceEEEcCC--------ceeEEEEc
Q 037736 149 P----KSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISF-STQVNILDSSIKSGDDCVAINGG--------SSNINITG 215 (377)
Q Consensus 149 ~----~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~s~--------~~nv~i~n 215 (377)
. ..++++..|++|+|+|++|.+ ..|+|.+.+ |+||+|+||.+..++ +++++|. .+||+|+|
T Consensus 190 ~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n 263 (394)
T PLN02155 190 GNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSS 263 (394)
T ss_pred CCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEe
Confidence 3 479999999999999999998 457788875 789999999998875 6999883 49999999
Q ss_pred eeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC----------CceEEeEEEEeEEEecc-Ccc
Q 037736 216 VACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG----------SGYARRISFEHITLIAS-KNP 283 (377)
Q Consensus 216 ~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~----------~g~i~nI~~~ni~~~~~-~~~ 283 (377)
|++.++ +|++|++... +..+.++||+|+|++|.+..+++.|...+.. ...|+||+|+|++.+.. ..+
T Consensus 264 ~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a 342 (394)
T PLN02155 264 SVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEA 342 (394)
T ss_pred eEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCce
Confidence 999875 6999988421 1257899999999999999999999765421 13689999999999876 445
Q ss_pred EEEEeeecCCCCCCCCCcceEEEeEEEEeEEEeeCC
Q 037736 284 IIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSAD 319 (377)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~ 319 (377)
+.|. + .+..+.+||+|+||+++...
T Consensus 343 ~~l~---c--------~~~~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 343 MKLV---C--------SKSSPCTGITLQDIKLTYNK 367 (394)
T ss_pred EEEE---e--------CCCCCEEEEEEEeeEEEecC
Confidence 5555 2 24568999999999998653
No 15
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.88 E-value=3e-20 Score=179.95 Aligned_cols=220 Identities=15% Similarity=0.234 Sum_probs=176.7
Q ss_pred cceEEEEEEEEEcCCCCCcCC-CCceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCC----C
Q 037736 75 NSVNIQVSGTIVAPDSKSWKQ-CGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNS----P 149 (377)
Q Consensus 75 ~~v~l~~~G~i~~~~~~~~~~-~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~----~ 149 (377)
++++|.+.|+|.+....+|.. ...+.++.+.+++|+.|+|.-..+ ++.| .+++.+|+|++|+++++.++ .
T Consensus 113 ~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~N---Sp~w--~i~i~~c~nV~i~~l~I~ap~~spN 187 (456)
T PLN03003 113 EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLD---SPMA--HIHISECNYVTISSLRINAPESSPN 187 (456)
T ss_pred cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEec---CCcE--EEEEeccccEEEEEEEEeCCCCCCC
Confidence 389999999998776666752 234567899999999999954443 3344 89999999999999999874 3
Q ss_pred ceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccC-cccEEEEeeEEEeCCceEEEcCC--------ceeEEEEceeecC
Q 037736 150 KSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISF-STQVNILDSSIKSGDDCVAINGG--------SSNINITGVACGP 220 (377)
Q Consensus 150 ~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~s~--------~~nv~i~n~~~~~ 220 (377)
.+||++..|+||+|+|+.|.+ ..|+|.+.+ |+||+|+||.+..++ +|+++|- .+||+|+||++.+
T Consensus 188 TDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 188 TDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred CCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 479999999999999999998 457788864 789999999998775 7999882 6899999999987
Q ss_pred C-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC------------CceEEeEEEEeEEEecc-CccEEE
Q 037736 221 G-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG------------SGYARRISFEHITLIAS-KNPIII 286 (377)
Q Consensus 221 ~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~------------~g~i~nI~~~ni~~~~~-~~~i~i 286 (377)
+ +|++|++... ..+.++||+|+|++|.+..+++.|...+.. ...|+||+|+|++-+.. ..++.+
T Consensus 262 T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l 339 (456)
T PLN03003 262 TMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDF 339 (456)
T ss_pred CCcEEEEEEeCC--CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEE
Confidence 6 6999988642 247899999999999999999999765531 23689999999997654 456655
Q ss_pred EeeecCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 037736 287 DQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSA 318 (377)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~ 318 (377)
. |+ +..+.+||+|+||.++..
T Consensus 340 ~---Cs--------~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 340 R---CS--------ERVPCTEIFLRDMKIETA 360 (456)
T ss_pred E---eC--------CCCCeeeEEEEEEEEEec
Confidence 5 32 456789999999998754
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.87 E-value=9.7e-21 Score=179.67 Aligned_cols=218 Identities=20% Similarity=0.343 Sum_probs=170.2
Q ss_pred ceEEEEEEEEEcCCCCCcCCC--------CceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeC
Q 037736 76 SVNIQVSGTIVAPDSKSWKQC--------GSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVN 147 (377)
Q Consensus 76 ~v~l~~~G~i~~~~~~~~~~~--------~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~ 147 (377)
++++.+.|+|.+....+|... ..+.++.+.+++|++|+|.-..+ ... | .+++..|+|++|+++++.+
T Consensus 61 ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~n--sp~-w--~~~~~~~~nv~i~~i~I~~ 135 (326)
T PF00295_consen 61 NITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRN--SPF-W--HIHINDCDNVTISNITINN 135 (326)
T ss_dssp EEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES---SS-E--SEEEESEEEEEEESEEEEE
T ss_pred EEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecC--CCe-e--EEEEEccCCeEEcceEEEe
Confidence 666666678876655555522 34577999999999999954433 333 4 8999999999999999987
Q ss_pred CC----ceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcc-cEEEEeeEEEeCCceEEEcC---C-----ceeEEEE
Q 037736 148 SP----KSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFST-QVNILDSSIKSGDDCVAING---G-----SSNINIT 214 (377)
Q Consensus 148 ~~----~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~s---~-----~~nv~i~ 214 (377)
+. ..++++..|++++|+|+.|.+ ..|+|.+.+.+ ||+|+||++..++ ++++++ + .+||+|+
T Consensus 136 ~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~i~nV~~~ 209 (326)
T PF00295_consen 136 PANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQNDIRNVTFE 209 (326)
T ss_dssp GGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--EEEEEEEE
T ss_pred cCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEeccc-cceeeeccCCccccEEEeEEEE
Confidence 53 469999999999999999998 46778887754 9999999998865 588886 2 4899999
Q ss_pred ceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC---------CceEEeEEEEeEEEeccC-cc
Q 037736 215 GVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG---------SGYARRISFEHITLIASK-NP 283 (377)
Q Consensus 215 n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~---------~g~i~nI~~~ni~~~~~~-~~ 283 (377)
||++.++ +|++|++.. +..+.++||+|+|++|.+..+++.|...+.. ...++||+|+|++.+... .+
T Consensus 210 n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~ 287 (326)
T PF00295_consen 210 NCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSA 287 (326)
T ss_dssp EEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEE
T ss_pred EEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceE
Confidence 9999875 689998853 2368999999999999999899998764321 247999999999998775 56
Q ss_pred EEEEeeecCCCCCCCCCcceEEEeEEEEeEEEee
Q 037736 284 IIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSS 317 (377)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~ 317 (377)
+.|.. .+..+++||+|+||.++.
T Consensus 288 i~i~~-----------~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 288 ISIDC-----------SPGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEE------------BTTSSEEEEEEEEEEEES
T ss_pred EEEEE-----------CCcCcEEeEEEEeEEEEc
Confidence 66652 234679999999999987
No 17
>PLN03010 polygalacturonase
Probab=99.86 E-value=4.1e-19 Score=171.01 Aligned_cols=213 Identities=19% Similarity=0.292 Sum_probs=171.2
Q ss_pred ceEEEEEEEEEcCCCCCcCCCCceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCC----Cce
Q 037736 76 SVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNS----PKS 151 (377)
Q Consensus 76 ~v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~----~~~ 151 (377)
+++|.+.|+|.+....+|. ++.+.+++|++|+|.-..+. +.| .+++.+|++++|+++++.++ ...
T Consensus 140 nv~I~G~G~IDG~G~~ww~------~l~~~~~~nv~v~gitl~ns---p~~--~i~i~~~~nv~i~~i~I~a~~~s~NTD 208 (409)
T PLN03010 140 GLMIDGSGTIDGRGSSFWE------ALHISKCDNLTINGITSIDS---PKN--HISIKTCNYVAISKINILAPETSPNTD 208 (409)
T ss_pred ccEEeeceEEeCCCccccc------eEEEEeecCeEEeeeEEEcC---Cce--EEEEeccccEEEEEEEEeCCCCCCCCC
Confidence 8999999999876545553 68889999999999544443 344 89999999999999999874 346
Q ss_pred eEEEeCeecEEEEEEEEECCCCCCCCCeeeccC-cccEEEEeeEEEeCCceEEEcCC--------ceeEEEEceeecCC-
Q 037736 152 HISINTCNGVSVSNIHIDSPEDSPNTDGIDISF-STQVNILDSSIKSGDDCVAINGG--------SSNINITGVACGPG- 221 (377)
Q Consensus 152 ~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~s~--------~~nv~i~n~~~~~~- 221 (377)
+|++..|++|+|+|++|.+ ..|+|.+.+ ++++.|+++.+..++ +|+++|. .+||+|+||++.++
T Consensus 209 GiDi~~s~nV~I~n~~I~~-----gDDcIaiksgs~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V~nV~v~n~~i~~t~ 282 (409)
T PLN03010 209 GIDISYSTNINIFDSTIQT-----GDDCIAINSGSSNINITQINCGPGH-GISVGSLGADGANAKVSDVHVTHCTFNQTT 282 (409)
T ss_pred ceeeeccceEEEEeeEEec-----CCCeEEecCCCCcEEEEEEEeECcC-CEEEccCCCCCCCCeeEEEEEEeeEEeCCC
Confidence 9999999999999999998 457788865 568888888887665 7999883 59999999999876
Q ss_pred ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC----------CceEEeEEEEeEEEecc-CccEEEEeee
Q 037736 222 HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG----------SGYARRISFEHITLIAS-KNPIIIDQHY 290 (377)
Q Consensus 222 ~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~----------~g~i~nI~~~ni~~~~~-~~~i~i~~~~ 290 (377)
+|++|++... ..+.++||+|+|++|.+..++|.|...+.. .-.|+||+|+|++-+.. +.++.|.
T Consensus 283 ~GirIKt~~G--~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~--- 357 (409)
T PLN03010 283 NGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLK--- 357 (409)
T ss_pred cceEEEEecC--CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEE---
Confidence 6899988642 357899999999999999999999876532 12589999999998744 4566665
Q ss_pred cCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 037736 291 CVGGGGCKGTSAVNVSEVTYSDVQGSSA 318 (377)
Q Consensus 291 ~~~~~~~~~~~~~~i~ni~f~ni~~~~~ 318 (377)
|+ +..+-+||+|+||.++..
T Consensus 358 Cs--------~~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 358 CS--------AITHCKDVVMDDIDVTME 377 (409)
T ss_pred eC--------CCCCEeceEEEEEEEEec
Confidence 32 345789999999999854
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.79 E-value=3.1e-17 Score=157.42 Aligned_cols=262 Identities=18% Similarity=0.244 Sum_probs=151.6
Q ss_pred CcEEEecCCcEEEeee---eeeeCCCCCcceEEEEE-EEEEcCCCCCcCCCCceecEEEeeeeceEEEeccEEeCCCccc
Q 037736 50 SATLEIPANKAFLLKS---TTFRGPCKSNSVNIQVS-GTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGW 125 (377)
Q Consensus 50 g~~V~iP~G~~Y~~~~---l~l~~~~~s~~v~l~~~-G~i~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~ 125 (377)
..+|||+|| +|.++. +.| +++..+|+++ |.+. .+.+......+|++|.|+|+++|....|
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L----~sn~~~VYlApGAyV-----------kGAf~~~~~~~nv~i~G~GVLSGe~Yvy 295 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRL----PSNTKWVYLAPGAYV-----------KGAFEYTDTQQNVKITGRGVLSGEQYVY 295 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEE-----------ES-EEE---SSEEEEESSSEEE-TTS-T
T ss_pred cceEEeCCc-eEEeCCCccEEE----CCCccEEEEcCCcEE-----------EEEEEEccCCceEEEEeeEEEcCcceeE
Confidence 569999999 899886 888 6734588887 5433 1334444579999999999999877655
Q ss_pred ccc--------------------cEE---EEeecceEEEeeEEeCCCceeEEEeCee----cEEEEEEEEECCCCCCCCC
Q 037736 126 WNQ--------------------AVY---FHNCNNLQVKGITIVNSPKSHISINTCN----GVSVSNIHIDSPEDSPNTD 178 (377)
Q Consensus 126 ~~~--------------------~i~---~~~~~nv~i~~~~i~~~~~~~i~~~~~~----nv~I~~~~i~~~~~~~~~D 178 (377)
... ++. ...+.++.++|++|.++|.|.+++...+ +..|+|.++..... .++|
T Consensus 296 ~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtD 374 (582)
T PF03718_consen 296 EADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTD 374 (582)
T ss_dssp TBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT--
T ss_pred eccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccC
Confidence 311 333 3456699999999999999999999665 48999999997654 6899
Q ss_pred eeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCc-e--eEeeccCCCCCCCCEEEEEEEceEEeCCc---
Q 037736 179 GIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGH-G--ISVGSLGLDGADDKVEEVHVRNCNFTGTQ--- 252 (377)
Q Consensus 179 Gi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~-g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~--- 252 (377)
||.+. ++-+|+||+++..||+|.+.. .++.++||+++..+ | +.+|.. ...++++.|+|+.+....
T Consensus 375 Gi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~ 445 (582)
T PF03718_consen 375 GIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIW 445 (582)
T ss_dssp --B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SS
T ss_pred Ccccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeec
Confidence 99996 577889999999999997765 59999999998642 3 777764 467999999999998762
Q ss_pred ------eeEEEEe-cC---CC------CceEEeEEEEeEEEecc-CccEEEEeeecCCCCCCCCCcceEEEeEEEEeEEE
Q 037736 253 ------NGARIKT-SP---GG------SGYARRISFEHITLIAS-KNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQG 315 (377)
Q Consensus 253 ------~gi~i~~-~~---~~------~g~i~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~ 315 (377)
.+|.-.+ .+ +. .-.|++++|+|+++++. ...+.|...- ..++..|+|+.|+...+
T Consensus 446 ~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq--------n~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 446 HNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ--------NYDNLVIKNVHFESWNG 517 (582)
T ss_dssp GGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE--------EEEEEEEEEEEECEET-
T ss_pred ccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC--------CCcceEEEEeecccccC
Confidence 2333322 22 11 23579999999999985 4455555210 11224455555553332
Q ss_pred eeCCcceEEEec-------CCCceecEEEEeEEEEec
Q 037736 316 SSADEKAITFDC-------SEEGCFGIKMEQVSITSS 345 (377)
Q Consensus 316 ~~~~~~~~~i~~-------~~~~i~~i~~~nv~i~~~ 345 (377)
..-......+.. ......+|.|+|.++.+.
T Consensus 518 ~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 518 LDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred cccccceeeccccccccccccccccceEEEeEEECCE
Confidence 211111111211 223478999999998543
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=2.9e-15 Score=141.05 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcCCCCcEEEecCCcEEEe-eeeeeeCCCCCcceEEEEEE
Q 037736 36 FAKAWTDFCSATGDSATLEIPANKAFLL-KSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 36 iq~Ai~~a~~~~~~g~~V~iP~G~~Y~~-~~l~l~~~~~s~~v~l~~~G 83 (377)
||+|+++|.+ |.+|+||+| +|.. .+|.+. ++ +++|+++|
T Consensus 1 iQ~Ai~~A~~----GDtI~l~~G-~Y~~~~~l~I~---~~-~Iti~G~g 40 (314)
T TIGR03805 1 LQEALIAAQP----GDTIVLPEG-VFQFDRTLSLD---AD-GVTIRGAG 40 (314)
T ss_pred CHhHHhhCCC----CCEEEECCC-EEEcceeEEEe---CC-CeEEEecC
Confidence 6999987654 999999999 8986 568883 35 88888764
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.36 E-value=8.6e-11 Score=110.84 Aligned_cols=163 Identities=17% Similarity=0.266 Sum_probs=125.2
Q ss_pred eeceEEEecc----EEeCCCcccccccEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCC---CCCCCe
Q 037736 107 VQGLSIDGSG----TIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPED---SPNTDG 179 (377)
Q Consensus 107 ~~ni~I~G~g----~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~---~~~~DG 179 (377)
.++++|+|.| +|++.++......+ ...+++++|+++++.++..+++.+..|++++|+++++..... ....+|
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~G 109 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQVGGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYG 109 (314)
T ss_pred CCCeEEEecCCCccEEecccCCCCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcce
Confidence 4678888865 47765542111144 457899999999999999999999999999999999973321 135789
Q ss_pred eeccCcccEEEEeeEEEeC-CceEEEcCCceeEEEEceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEE
Q 037736 180 IDISFSTQVNILDSSIKSG-DDCVAINGGSSNINITGVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARI 257 (377)
Q Consensus 180 i~~~~s~nv~I~n~~i~~~-dD~i~i~s~~~nv~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i 257 (377)
|.+..|++++|++|+++.. |++|.++. +++++|+||++... .||.+.. ..++.|+++++.+...|+.+
T Consensus 110 I~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 110 IYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILV 179 (314)
T ss_pred EEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEE
Confidence 9999999999999999984 56899887 88999999999865 4777732 35789999999988789988
Q ss_pred EecCCC-CceEEeEEEEeEEEecc
Q 037736 258 KTSPGG-SGYARRISFEHITLIAS 280 (377)
Q Consensus 258 ~~~~~~-~g~i~nI~~~ni~~~~~ 280 (377)
...++. ...-++++++++++.+.
T Consensus 180 ~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 180 FDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred eecCCCCcCCccceEEECCEEECC
Confidence 654432 12346788888877654
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=7.1e-11 Score=116.67 Aligned_cols=154 Identities=15% Similarity=0.226 Sum_probs=126.0
Q ss_pred CceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCC----ceEEEcCCceeEEEEceeecCCc-e
Q 037736 149 PKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGD----DCVAINGGSSNINITGVACGPGH-G 223 (377)
Q Consensus 149 ~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~s~~~nv~i~n~~~~~~~-g 223 (377)
+...+.+..|.||++++++|.+++ ..++|+..|+|++++|..+.+.+ |++.+.+ |+|++|++|+|..+. .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 345788999999999999999964 36799999999999999999854 4888888 999999999998764 5
Q ss_pred eEeeccCCCC---CCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCCCC
Q 037736 224 ISVGSLGLDG---ADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGT 300 (377)
Q Consensus 224 i~igs~~~~~---~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~ 300 (377)
+.+.+..... -....++|+|+||.|.....++.+.++. .|.++||++||+.|.+..+++.|+... .
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~---------~ 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTND---------G 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeec---------c
Confidence 8887643111 1355699999999998776677887765 688999999999999999999999742 2
Q ss_pred cceEEEeEEEEeEEEeeC
Q 037736 301 SAVNVSEVTYSDVQGSSA 318 (377)
Q Consensus 301 ~~~~i~ni~f~ni~~~~~ 318 (377)
.++.++||+|+++.+...
T Consensus 381 ~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred cceeEEEEEEecccccCc
Confidence 348999999999887644
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.19 E-value=2.5e-09 Score=95.64 Aligned_cols=229 Identities=18% Similarity=0.290 Sum_probs=144.8
Q ss_pred cCCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEE-Eee-eeeeeCCCCCcceEEEEEEEEEcC
Q 037736 11 GDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAF-LLK-STTFRGPCKSNSVNIQVSGTIVAP 88 (377)
Q Consensus 11 ~~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y-~~~-~l~l~~~~~s~~v~l~~~G~i~~~ 88 (377)
..+.+.+++.||-.. |--++|.+|+. .+.||.+|+|-+- .+. .+.+ +. +-||.+.|.+++.
T Consensus 29 ~~~~~~vni~dy~~~-----dwiasfkqaf~-------e~qtvvvpagl~cenint~ifi----p~-gktl~v~g~l~gn 91 (464)
T PRK10123 29 LPARQSVNINDYNPH-----DWIASFKQAFS-------EGQTVVVPAGLVCDNINTGIFI----PP-GKTLHILGSLRGN 91 (464)
T ss_pred cCCCceeehhhcCcc-----cHHHHHHHHhc-------cCcEEEecCccEecccccceEe----CC-CCeEEEEEEeecC
Confidence 346789999999863 77888999994 2779999999322 222 3666 56 7899999988765
Q ss_pred CCCCcCCCCceecEEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCc-eeEEEeC-----eecEE
Q 037736 89 DSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPK-SHISINT-----CNGVS 162 (377)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~-~~i~~~~-----~~nv~ 162 (377)
+.+.++.-++|+ +.|.+ .|.. ..-.+-+ ..+++.|+++.+..-.. ..+.+.+ -+|++
T Consensus 92 --------grgrfvlqdg~q---v~ge~----~g~~-hnitldv-rgsdc~ikgiamsgfgpvtqiyiggk~prvmrnl~ 154 (464)
T PRK10123 92 --------GRGRFVLQDGSQ---VTGEE----GGSM-HNITLDV-RGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLT 154 (464)
T ss_pred --------CceeEEEecCCE---eecCC----Ccee-eeEEEee-ccCceEEeeeeecccCceeEEEEcCCCchhhhccE
Confidence 356666554443 44421 1110 0001222 34578888888876432 3344443 25889
Q ss_pred EEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe-CCceEEEcCC--ceeEEEEc-----eeecCC---ceeEeeccC-
Q 037736 163 VSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS-GDDCVAINGG--SSNINITG-----VACGPG---HGISVGSLG- 230 (377)
Q Consensus 163 I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~s~--~~nv~i~n-----~~~~~~---~gi~igs~~- 230 (377)
|+++++....++-...|+|-.- ..+.|.||.|.. +.|+|...-. -++++|++ ..|.++ +||.||-.+
T Consensus 155 id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglags 233 (464)
T PRK10123 155 IDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGS 233 (464)
T ss_pred EccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEEecccceeeehheheeecccCCcccceeeeeeccc
Confidence 9999988766655667777654 688999999988 6677644331 35566554 445544 678887655
Q ss_pred ----CCCCCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEE
Q 037736 231 ----LDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHIT 276 (377)
Q Consensus 231 ----~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~ 276 (377)
.+++...++|..+.|++-.++..-+.+. .+..-.|+||+-+||+
T Consensus 234 tydn~ype~q~vknfvvanitgs~crqlvhve--ngkhfvirnvkaknit 281 (464)
T PRK10123 234 TYDNNYPEDQAVKNFVVANITGSDCRQLIHVE--NGKHFVIRNIKAKNIT 281 (464)
T ss_pred cccCCCchhhhhhhEEEEeccCcChhheEEec--CCcEEEEEeeeccccC
Confidence 3445788899999999887776555554 2223344444444443
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.03 E-value=3.9e-09 Score=93.61 Aligned_cols=125 Identities=20% Similarity=0.403 Sum_probs=85.4
Q ss_pred EEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCC-----CCCee------eccCcccEEEEeeEEEeC
Q 037736 130 VYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSP-----NTDGI------DISFSTQVNILDSSIKSG 198 (377)
Q Consensus 130 i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~-----~~DGi------~~~~s~nv~I~n~~i~~~ 198 (377)
-.|+.|++++++++++.++.-..+ .|++++++|+.+....... .-|++ -+++++||.|+|+.+.+.
T Consensus 92 K~fR~~~~i~L~nv~~~~A~Et~W---~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sK 168 (277)
T PF12541_consen 92 KMFRECSNITLENVDIPDADETLW---NCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSK 168 (277)
T ss_pred hHhhcccCcEEEeeEeCCCcccCE---EeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecc
Confidence 345778888888888877765433 5677777777774322111 12222 345689999999999887
Q ss_pred CceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEe
Q 037736 199 DDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLI 278 (377)
Q Consensus 199 dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~ 278 (377)
| +++. ++||+|.|+.+. |=-+|. ..+|+++.||++.+. ++.-+++|++++|++|.
T Consensus 169 D---AFWn-~eNVtVyDS~i~---GEYLgW--------~SkNltliNC~I~g~----------QpLCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 169 D---AFWN-CENVTVYDSVIN---GEYLGW--------NSKNLTLINCTIEGT----------QPLCYCDNLVLENCTMI 223 (277)
T ss_pred c---cccc-CCceEEEcceEe---eeEEEE--------EcCCeEEEEeEEecc----------CccEeecceEEeCcEee
Confidence 6 3444 889999998883 322222 347999999999776 34557789999999998
Q ss_pred ccCc
Q 037736 279 ASKN 282 (377)
Q Consensus 279 ~~~~ 282 (377)
++..
T Consensus 224 ~tdl 227 (277)
T PF12541_consen 224 DTDL 227 (277)
T ss_pred ccee
Confidence 7643
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.82 E-value=5.8e-08 Score=81.78 Aligned_cols=139 Identities=21% Similarity=0.339 Sum_probs=89.5
Q ss_pred cEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCc
Q 037736 129 AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGS 208 (377)
Q Consensus 129 ~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~ 208 (377)
.|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+. ..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 355667778888888888888888888888888888888887 456788887788888888888866666666 47
Q ss_pred eeEEEEceeecCC--ceeEeeccCCCCCCCCEEEEEEEceEEeCCc-eeEEEEecCCCCceEEeEEEEeEEEeccC-ccE
Q 037736 209 SNINITGVACGPG--HGISVGSLGLDGADDKVEEVHVRNCNFTGTQ-NGARIKTSPGGSGYARRISFEHITLIASK-NPI 284 (377)
Q Consensus 209 ~nv~i~n~~~~~~--~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~g~i~nI~~~ni~~~~~~-~~i 284 (377)
.+++|++|.+... .|+.+.. ...+++|+++++.+.. .|+.+.... -.+++++++++.+.. .++
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi 142 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGI 142 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeE
Confidence 7888888888754 2566631 1457888888888766 677777432 236677777777654 455
Q ss_pred EE
Q 037736 285 II 286 (377)
Q Consensus 285 ~i 286 (377)
.+
T Consensus 143 ~~ 144 (158)
T PF13229_consen 143 YL 144 (158)
T ss_dssp E-
T ss_pred EE
Confidence 44
No 25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.80 E-value=2.6e-07 Score=88.89 Aligned_cols=146 Identities=12% Similarity=0.172 Sum_probs=100.8
Q ss_pred cEEEEeecceEEEeeEEeCCC------ceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe-CCce
Q 037736 129 AVYFHNCNNLQVKGITIVNSP------KSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS-GDDC 201 (377)
Q Consensus 129 ~i~~~~~~nv~i~~~~i~~~~------~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~ 201 (377)
.+.-...++++|++++|.++. ..+|.+..|++++|++++|.+. ..-||.+..|+ ..|.++.+.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs----g~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS----GGNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC----CcceEEEEcCc-ceEecceEeccccce
Confidence 566778999999999999865 3478999999999999999983 24678888877 6666666655 5555
Q ss_pred EEEcCCceeEEEEceeecCC--ceeEeecc------------------------CCCCC---CCCEEEEEEEceEEeCCc
Q 037736 202 VAINGGSSNINITGVACGPG--HGISVGSL------------------------GLDGA---DDKVEEVHVRNCNFTGTQ 252 (377)
Q Consensus 202 i~i~s~~~nv~i~n~~~~~~--~gi~igs~------------------------~~~~~---~~~i~ni~i~n~~~~~~~ 252 (377)
|.++. +++++|+++++.+. .||.+--. +.++. --...+++|+++++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 66665 66777777777654 23433211 11111 123367889999998888
Q ss_pred -eeEEEEecCCCCceEEeEEEEeEEEeccCc-cEEEE
Q 037736 253 -NGARIKTSPGGSGYARRISFEHITLIASKN-PIIID 287 (377)
Q Consensus 253 -~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~-~i~i~ 287 (377)
.|+++.+. +|+.|+++++++..+ +++..
T Consensus 262 ~dgI~~nss-------s~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNSA-------SNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEcc-------cCcEEECcEeeeeeeeEEEEE
Confidence 78888743 567777777776665 55543
No 26
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.77 E-value=2.2e-06 Score=82.42 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeee
Q 037736 32 DSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTF 68 (377)
Q Consensus 32 ~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l 68 (377)
+.++||+||+.|.+ |.+|+|+.| +|.-..|.+
T Consensus 3 s~~~lq~Ai~~a~p----GD~I~L~~G-ty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNAKP----GDTIVLADG-TYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH--T----T-EEEE-SE-EEET-EEEE
T ss_pred CHHHHHHHHHhCCC----CCEEEECCc-eeecceEEE
Confidence 57899999987655 999999999 896334444
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.76 E-value=1.7e-07 Score=83.42 Aligned_cols=99 Identities=18% Similarity=0.330 Sum_probs=73.7
Q ss_pred EEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeE
Q 037736 132 FHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNI 211 (377)
Q Consensus 132 ~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv 211 (377)
+.+|+|+.++++.+.. ...+++++|+.|+|.++.+.+. ++.|+||+|.|+.+... .++-.++|+
T Consensus 133 ~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKDA--------FWn~eNVtVyDS~i~GE----YLgW~SkNl 196 (277)
T PF12541_consen 133 FMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKDA--------FWNCENVTVYDSVINGE----YLGWNSKNL 196 (277)
T ss_pred eeeccceEEeceEEeC----CEEeeceeeEEEEccEEecccc--------cccCCceEEEcceEeee----EEEEEcCCe
Confidence 3455555555555544 2557889999999999998543 46799999999999852 333347999
Q ss_pred EEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEE
Q 037736 212 NITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARI 257 (377)
Q Consensus 212 ~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i 257 (377)
++-||++.+..|+- +++|++++||+|.++.-++.-
T Consensus 197 tliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 197 TLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred EEEEeEEeccCccE-----------eecceEEeCcEeecceeeeee
Confidence 99999997766654 578999999999988655544
No 28
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.67 E-value=7.1e-06 Score=80.07 Aligned_cols=242 Identities=12% Similarity=0.135 Sum_probs=130.8
Q ss_pred CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC-------CCcCCC------C--ceecEE---Eeeeece
Q 037736 49 DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS-------KSWKQC------G--SQCWLS---LYDVQGL 110 (377)
Q Consensus 49 ~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~-------~~~~~~------~--~~~~i~---~~~~~ni 110 (377)
...+|||.|| .|.-+.+.+.+- .+ ++.+.+.|+|.+..= +.|... . .-.++. ..+.+++
T Consensus 255 n~~~VYlApG-AyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~ 331 (582)
T PF03718_consen 255 NTKWVYLAPG-AYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTL 331 (582)
T ss_dssp T--EEEE-TT-EEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEE
T ss_pred CccEEEEcCC-cEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceE
Confidence 4679999999 899888766421 34 788888888865321 112100 0 112233 3356688
Q ss_pred EEEeccEEeCCCcccccccEEEEeec----ceEEEeeEEeCCCce---eEEEeCeecEEEEEEEEECCCCCCCCCeeecc
Q 037736 111 SIDGSGTIDGNGRGWWNQAVYFHNCN----NLQVKGITIVNSPKS---HISINTCNGVSVSNIHIDSPEDSPNTDGIDIS 183 (377)
Q Consensus 111 ~I~G~g~idg~g~~~~~~~i~~~~~~----nv~i~~~~i~~~~~~---~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~ 183 (377)
.+.|. +|. ..++| .+.+++.+ +..|++.+...+..| |+.+. .+-+|+||.++. +.|+|.+.
T Consensus 332 ~~~Gi-TI~--~pP~~--Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly--~nS~i~dcF~h~-----nDD~iKlY 399 (582)
T PF03718_consen 332 TCEGI-TIN--DPPFH--SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY--PNSTIRDCFIHV-----NDDAIKLY 399 (582)
T ss_dssp EEES--EEE----SS---SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEE-----SS-SEE--
T ss_pred EEEee-Eec--CCCcc--eEEecCCccccccceeeceeeeeeEEeccCCcccc--CCCeeeeeEEEe-----cCchhhee
Confidence 88884 343 23444 77777555 478999999986544 55554 677899999998 67788887
Q ss_pred CcccEEEEeeEEEeCC--ceEEEcC---CceeEEEEceeecC----------CceeEeeccCCC---C------CCCCEE
Q 037736 184 FSTQVNILDSSIKSGD--DCVAING---GSSNINITGVACGP----------GHGISVGSLGLD---G------ADDKVE 239 (377)
Q Consensus 184 ~s~nv~I~n~~i~~~d--D~i~i~s---~~~nv~i~n~~~~~----------~~gi~igs~~~~---~------~~~~i~ 239 (377)
. +++.|++|.+...+ -.+.++. ..+||.|+|+.+-. ..+|-. +...+ + ....++
T Consensus 400 h-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~-ss~~y~~~~s~~~adp~~ti~ 477 (582)
T PF03718_consen 400 H-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILG-SSPFYDDMASTKTADPSTTIR 477 (582)
T ss_dssp S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEE-E--BTTS-SSS--BEEEEEEE
T ss_pred e-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEe-cccccccccCCCCCCccccee
Confidence 6 79999999998832 2333332 15788999988622 123322 21222 0 124568
Q ss_pred EEEEEceEEeCC-ceeEEEEecCCCCceEEeEEEEeEEEecc--C---cc-EEEEeeecCCCCCCCCCcceEEEeEEEEe
Q 037736 240 EVHVRNCNFTGT-QNGARIKTSPGGSGYARRISFEHITLIAS--K---NP-IIIDQHYCVGGGGCKGTSAVNVSEVTYSD 312 (377)
Q Consensus 240 ni~i~n~~~~~~-~~gi~i~~~~~~~g~i~nI~~~ni~~~~~--~---~~-i~i~~~~~~~~~~~~~~~~~~i~ni~f~n 312 (377)
+++|+|+++++. ...++|.. .....|+.++|+.++.- . .. -.++..+... ........++.|+|
T Consensus 478 ~~~~~nv~~EG~~~~l~ri~p----lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~-----~~~~~~~~gi~i~N 548 (582)
T PF03718_consen 478 NMTFSNVRCEGMCPCLFRIYP----LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMA-----NNKQNDTMGIIIEN 548 (582)
T ss_dssp EEEEEEEEEECCE-ECEEE------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTT-----T--B--EEEEEEEE
T ss_pred eEEEEeEEEecccceeEEEee----cCCCcceEEEEeecccccCcccccceeecccccccc-----ccccccccceEEEe
Confidence 999999999996 34567763 34567788888888732 1 11 1222222211 12245678888888
Q ss_pred EEEe
Q 037736 313 VQGS 316 (377)
Q Consensus 313 i~~~ 316 (377)
.++-
T Consensus 549 ~tVg 552 (582)
T PF03718_consen 549 WTVG 552 (582)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8874
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.65 E-value=4.2e-07 Score=76.47 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=95.1
Q ss_pred EEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeec
Q 037736 103 SLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDI 182 (377)
Q Consensus 103 ~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~ 182 (377)
.+.+..+++|.+ -.|...+.. .+.+..+..++|++.+|.+ ...++.+....+++++++.+.... .|+.+
T Consensus 4 ~i~~~~~~~i~~-~~i~~~~~~----gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~ 72 (158)
T PF13229_consen 4 SINNGSNVTIRN-CTISNNGGD----GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYV 72 (158)
T ss_dssp EETTCEC-EEES-EEEESSSSE----CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEEC
T ss_pred EEECCcCeEEee-eEEEeCCCe----EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEE
Confidence 445556666666 344333222 7889889899999999999 678899999899999999999742 78888
Q ss_pred cCcccEEEEeeEEEe-CCceEEEcCCceeEEEEceeecCC--ceeEeeccCCCCCCCCEEEEEEEceEEeCCc-eeEEEE
Q 037736 183 SFSTQVNILDSSIKS-GDDCVAINGGSSNINITGVACGPG--HGISVGSLGLDGADDKVEEVHVRNCNFTGTQ-NGARIK 258 (377)
Q Consensus 183 ~~s~nv~I~n~~i~~-~dD~i~i~s~~~nv~i~n~~~~~~--~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~ 258 (377)
..+.+++|++|.+.. .+.+|.+.....+++|++|++... .|+.+... .-.++++++|++.+.. .|+.+.
T Consensus 73 ~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~~ 145 (158)
T PF13229_consen 73 SGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYLI 145 (158)
T ss_dssp CS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-T
T ss_pred EecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEEE
Confidence 888999999999998 455888874267899999999764 56776442 1347889999998865 677776
Q ss_pred ecCCCCceEEeEEEEeEE
Q 037736 259 TSPGGSGYARRISFEHIT 276 (377)
Q Consensus 259 ~~~~~~g~i~nI~~~ni~ 276 (377)
... .++++.+++
T Consensus 146 ~~~------~~~~v~~n~ 157 (158)
T PF13229_consen 146 SGS------SNCTVTNNT 157 (158)
T ss_dssp T-S------S--EEES-E
T ss_pred CCC------CeEEEECCC
Confidence 322 145555544
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.3e-05 Score=72.81 Aligned_cols=139 Identities=25% Similarity=0.285 Sum_probs=71.8
Q ss_pred eEEEEEEEEEcCCCCCcCCCCceecEEEeeeeceEEEecc---EEeCCCcccccccEEEEeecceEEEeeEEeCCCceeE
Q 037736 77 VNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSG---TIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHI 153 (377)
Q Consensus 77 v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~g---~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i 153 (377)
+.|.+.|+|..+.. ....+.+..+.|.+|.|.| .+-+ | .+.++..+||.|++++|+..+.|
T Consensus 77 ~ii~v~Gti~~s~p-------s~~k~~iki~sNkTivG~g~~a~~~g----~---gl~i~~a~NVIirNltf~~~~~~-- 140 (345)
T COG3866 77 VIIVVKGTITASTP-------SDKKITIKIGSNKTIVGSGADATLVG----G---GLKIRDAGNVIIRNLTFEGFYQG-- 140 (345)
T ss_pred EEEEEcceEeccCC-------CCceEEEeeccccEEEeeccccEEEe----c---eEEEEeCCcEEEEeeEEEeeccC--
Confidence 56777788876621 1113667778888888865 2222 1 45555666666666666655411
Q ss_pred EEeCeecEEEEEEEEECCCCCCCCCeeec-cCcccEEEEeeEEEe---------CCceEEEcCCceeEEEEceeecCC-c
Q 037736 154 SINTCNGVSVSNIHIDSPEDSPNTDGIDI-SFSTQVNILDSSIKS---------GDDCVAINGGSSNINITGVACGPG-H 222 (377)
Q Consensus 154 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~---------~dD~i~i~s~~~nv~i~n~~~~~~-~ 222 (377)
+ ++-|+|.+ ..++||.|++|+|.. +|..+.++-++..|+|++|.|... .
T Consensus 141 -------------------d-~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~K 200 (345)
T COG3866 141 -------------------D-PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDK 200 (345)
T ss_pred -------------------C-CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCe
Confidence 0 12344544 344555555555554 133344555555566666655432 2
Q ss_pred eeEeeccCCCCCCCCEEEEEEEceEEeCC
Q 037736 223 GISVGSLGLDGADDKVEEVHVRNCNFTGT 251 (377)
Q Consensus 223 gi~igs~~~~~~~~~i~ni~i~n~~~~~~ 251 (377)
.+-+|+.........-.+|++.+|.|.+.
T Consensus 201 ssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 201 SSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred eeeeccCCcccccCCceeEEEeccccccc
Confidence 34444433211123334555555555554
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.51 E-value=6.1e-06 Score=74.92 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=74.5
Q ss_pred cEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCc
Q 037736 129 AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGS 208 (377)
Q Consensus 129 ~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~ 208 (377)
.+.+..+.+++|++.++.+. .+++++..+.+++|+++.+.. +..||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45666777777777777776 567777777777777777776 3367777766666777777777555776665 4
Q ss_pred eeEEEEceeecC-CceeEeeccCCCCCCCCEEEEEEEceEEeCC-ceeEE
Q 037736 209 SNINITGVACGP-GHGISVGSLGLDGADDKVEEVHVRNCNFTGT-QNGAR 256 (377)
Q Consensus 209 ~nv~i~n~~~~~-~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~-~~gi~ 256 (377)
.+.+|+++++.. ..||.+.. ..+.+|+++++.+. ..|+.
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~---------s~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSS---------SSNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CceEEECcEEeCCCEEEEEEe---------CCCCEEECeEEeCCCccceE
Confidence 556677777753 24566532 15666777777666 66776
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.50 E-value=5.2e-06 Score=75.40 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=119.9
Q ss_pred cEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCc
Q 037736 129 AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGS 208 (377)
Q Consensus 129 ~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~ 208 (377)
.+.+..+++..|++.++.+.. .++.+..+.+++|+++++.. ...||++..+++++|+++.+.....+|.+....
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGSS 88 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcCC
Confidence 688888999999999998764 67788999999999999997 478999999999999999999977899998844
Q ss_pred eeEEEEceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEecc-CccEEE
Q 037736 209 SNINITGVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIAS-KNPIII 286 (377)
Q Consensus 209 ~nv~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~-~~~i~i 286 (377)
+.+|+++++... .||.+.. ..+.+|+++++.+...|+.+... .+.++++.++... ..++.+
T Consensus 89 -~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 89 -NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred -CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceEE
Confidence 559999999754 5776633 34588999999988889999842 5677888888877 778773
Q ss_pred EeeecCCCCCCCCCcceEEEeEEEEeE
Q 037736 287 DQHYCVGGGGCKGTSAVNVSEVTYSDV 313 (377)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~ni~f~ni 313 (377)
.. ......|.+-.|.|.
T Consensus 152 ~~----------~s~~n~I~~N~f~N~ 168 (236)
T PF05048_consen 152 LS----------GSSGNTIYNNNFNNS 168 (236)
T ss_pred ec----------cCCCCEEECCCccCE
Confidence 32 123356666666444
No 33
>smart00656 Amb_all Amb_all domain.
Probab=98.46 E-value=1.2e-05 Score=70.44 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=84.8
Q ss_pred CeecEEEEEEEEECCCC--CCCCCeeeccCcccEEEEeeEEEeC----------CceEEEcCCceeEEEEceeecCC-ce
Q 037736 157 TCNGVSVSNIHIDSPED--SPNTDGIDISFSTQVNILDSSIKSG----------DDCVAINGGSSNINITGVACGPG-HG 223 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~--~~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~s~~~nv~i~n~~~~~~-~g 223 (377)
.++||.|+|++|+.... ....|+|.+..+++|.|++|.+..+ |..+.++.++.++++++|.|..- .+
T Consensus 38 ~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~ 117 (190)
T smart00656 38 SVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKV 117 (190)
T ss_pred ecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEE
Confidence 34455555555554322 1367899998899999999999886 45567787889999999999653 46
Q ss_pred eEeeccCCCCCCCCEEEEEEEceEEeCCc-eeEEEEecCCCCceEEeEEEEeEEEeccC-ccEEEEeeecCCCCCCCCCc
Q 037736 224 ISVGSLGLDGADDKVEEVHVRNCNFTGTQ-NGARIKTSPGGSGYARRISFEHITLIASK-NPIIIDQHYCVGGGGCKGTS 301 (377)
Q Consensus 224 i~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~ 301 (377)
.-+|+..... .....+|++.++.+.++. +..+++ .| .+.+-|+.+.+.. +++-.. ...
T Consensus 118 ~liG~~d~~~-~~~~~~vT~h~N~~~~~~~R~P~~r-----~g---~~hv~NN~~~n~~~~~~~~~-----------~~~ 177 (190)
T smart00656 118 MLLGHSDSDT-DDGKMRVTIAHNYFGNLRQRAPRVR-----FG---YVHVYNNYYTGWTSYAIGGR-----------MGA 177 (190)
T ss_pred EEEccCCCcc-ccccceEEEECcEEcCcccCCCccc-----CC---EEEEEeeEEeCcccEeEecC-----------CCc
Confidence 7777643211 122457999999887652 233333 12 3455555555443 232222 223
Q ss_pred ceEEEeEEEEeE
Q 037736 302 AVNVSEVTYSDV 313 (377)
Q Consensus 302 ~~~i~ni~f~ni 313 (377)
...+|+-.|++.
T Consensus 178 ~v~~E~N~F~~~ 189 (190)
T smart00656 178 TILSEGNYFEAP 189 (190)
T ss_pred EEEEECeEEECC
Confidence 567777777663
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=3e-05 Score=70.44 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=83.3
Q ss_pred EEEEeecceEEEeeEEeC-CCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCc
Q 037736 130 VYFHNCNNLQVKGITIVN-SPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGS 208 (377)
Q Consensus 130 i~~~~~~nv~i~~~~i~~-~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~ 208 (377)
+.+.-+.|.+|.++--.. ...|++.+.+..||.|+|++|... +..|+ .+|+|.|..+.
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~---~~~d~------------------~~D~Isi~~~~ 153 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGF---YQGDP------------------NYDAISIYDDG 153 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEee---ccCCC------------------CCCcEEeccCC
Confidence 666667777776654222 234667777777777777777751 22222 16889997678
Q ss_pred eeEEEEceeecCC---------ce-eEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEEecCCC--CceEEeEEEEeEE
Q 037736 209 SNINITGVACGPG---------HG-ISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGG--SGYARRISFEHIT 276 (377)
Q Consensus 209 ~nv~i~n~~~~~~---------~g-i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~--~g~i~nI~~~ni~ 276 (377)
+||=|.+|+|..+ +| +-| ......|+|+++.+.+....+-+...... ...-.+||+.++.
T Consensus 154 ~nIWIDH~tf~~~s~~~~~~h~DGl~Di--------k~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNy 225 (345)
T COG3866 154 HNIWIDHNTFSGGSYNASGSHGDGLVDI--------KKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNY 225 (345)
T ss_pred eEEEEEeeEeccccccccccCCCccEEe--------ccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccc
Confidence 9999999999653 12 333 34567899999999999888888754321 2345678888888
Q ss_pred Eecc
Q 037736 277 LIAS 280 (377)
Q Consensus 277 ~~~~ 280 (377)
++++
T Consensus 226 Fkn~ 229 (345)
T COG3866 226 FKNL 229 (345)
T ss_pred cccc
Confidence 8876
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.40 E-value=1.6e-05 Score=71.66 Aligned_cols=173 Identities=19% Similarity=0.202 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcEEEecCCcEEEee-----eeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceecEEEee
Q 037736 32 DSDAFAKAWTDFCSATGDSATLEIPANKAFLLK-----STTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYD 106 (377)
Q Consensus 32 ~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~-----~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~ 106 (377)
--+-|++|++.|.+ |.+|+|-+| +|.-. ||.+ |+ .++|+++..-+... ..++. .+
T Consensus 14 P~~Ti~~A~~~a~~----g~~i~l~~G-tY~~~~ge~fPi~i----~~-gVtl~G~~~~kG~~---------~il~~-g~ 73 (246)
T PF07602_consen 14 PFKTITKALQAAQP----GDTIQLAPG-TYSEATGETFPIII----KP-GVTLIGNESNKGQI---------DILIT-GG 73 (246)
T ss_pred CHHHHHHHHHhCCC----CCEEEECCc-eeccccCCcccEEe----cC-CeEEeecccCCCcc---------eEEec-CC
Confidence 45679999987654 889999999 89543 4777 67 88888754221110 00111 11
Q ss_pred eeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCC---CceeEEEeCeecEEEEEEEEECCCCCCCCCeeecc
Q 037736 107 VQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNS---PKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDIS 183 (377)
Q Consensus 107 ~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~---~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~ 183 (377)
-..+.|.|.+ ...-...+.+....+.+|+++++.++ ...++.+..+ +.+|+|++|... ..+|+.+.
T Consensus 74 ~~~~~I~g~~------~~~~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~----~~~GI~v~ 142 (246)
T PF07602_consen 74 GTGPTISGGG------PDLSGQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN----GREGIFVT 142 (246)
T ss_pred ceEEeEeccC------ccccceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC----ccccEEEE
Confidence 1112333322 11100134455566777777777776 2334555444 666666666652 23443331
Q ss_pred CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecC-CceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEE
Q 037736 184 FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGP-GHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIK 258 (377)
Q Consensus 184 ~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~-~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~ 258 (377)
.. ..+....++.|+++.+.. ..|+++-... ..+. -.|+|+.+.+...|+.+.
T Consensus 143 g~-----------------~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~-----~~~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 143 GT-----------------SANPGINGNVISGNSIYFNKTGISISDNA-----APVE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred ee-----------------ecCCcccceEeecceEEecCcCeEEEccc-----CCcc-ceeeccEEEeCCcCeEee
Confidence 11 112234556677766654 3577774332 1222 355788887766687765
No 36
>PLN02773 pectinesterase
Probab=98.36 E-value=8.3e-05 Score=69.76 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=32.9
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||..| -.-||+||+++.......-+|+|.+| +|. ..|.+... |. +++|.+++
T Consensus 12 dGsGd-f~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~-E~V~I~~~-k~-~itl~G~~ 63 (317)
T PLN02773 12 DGSGD-YCTVQDAIDAVPLCNRCRTVIRVAPG-VYR-QPVYVPKT-KN-LITLAGLS 63 (317)
T ss_pred CCCCC-ccCHHHHHhhchhcCCceEEEEEeCc-eEE-EEEEECcC-Cc-cEEEEeCC
Confidence 44433 67899999877551112347999999 896 44555211 34 78888764
No 37
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.30 E-value=0.00018 Score=66.36 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=99.6
Q ss_pred ceecEEEeeeeceEEEeccEEeCCCcccccc--cE-EEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCC-
Q 037736 98 SQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ--AV-YFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPED- 173 (377)
Q Consensus 98 ~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~--~i-~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~- 173 (377)
.+..+... ++++.++|. +..+.|....+. .| .....+.-.|+...+..+ .+++.+..+.++.|++.+|....+
T Consensus 68 ~G~~vtv~-aP~~~v~Gl-~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~ 144 (408)
T COG3420 68 KGSYVTVA-APDVIVEGL-TVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADL 144 (408)
T ss_pred cccEEEEe-CCCceeeeE-EEecCCCCcccccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeecccc
Confidence 34556554 777777773 344444433322 23 334455566676666665 478999999999999999997543
Q ss_pred --CCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCC
Q 037736 174 --SPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGT 251 (377)
Q Consensus 174 --~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~ 251 (377)
...++||+++.++++.|....+.-+.|||..+. ++...|+++.+... +.|.+- ....+..++++...+.
T Consensus 145 r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~~---RygvHy-----M~t~~s~i~dn~s~~N 215 (408)
T COG3420 145 RVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRDL---RYGVHY-----MYTNDSRISDNSSRDN 215 (408)
T ss_pred chhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhhe---eeeEEE-----EeccCcEeecccccCC
Confidence 246789999999999999999999999999988 66777777777432 222210 1224555666666666
Q ss_pred ceeEEEE
Q 037736 252 QNGARIK 258 (377)
Q Consensus 252 ~~gi~i~ 258 (377)
.-|+.++
T Consensus 216 ~vG~ALM 222 (408)
T COG3420 216 RVGYALM 222 (408)
T ss_pred cceEEEE
Confidence 5566665
No 38
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.17 E-value=1.9e-05 Score=69.67 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=53.1
Q ss_pred CCCCeeeccCcccEEEEeeEEEeC---------CceEEEcCCceeEEEEceeecCC-ceeEeeccCCCCCCCCEEEEEEE
Q 037736 175 PNTDGIDISFSTQVNILDSSIKSG---------DDCVAINGGSSNINITGVACGPG-HGISVGSLGLDGADDKVEEVHVR 244 (377)
Q Consensus 175 ~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~s~~~nv~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~ 244 (377)
...|+|.+..++||.|++|.+..+ |..+.++.++.+|+|++|.|... .+.-+|+......... .++++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 467889999999999999999876 44578888899999999999754 3455666432222344 889999
Q ss_pred ceEEeCC
Q 037736 245 NCNFTGT 251 (377)
Q Consensus 245 n~~~~~~ 251 (377)
.+.+.++
T Consensus 152 hN~f~~~ 158 (200)
T PF00544_consen 152 HNYFANT 158 (200)
T ss_dssp S-EEEEE
T ss_pred eEEECch
Confidence 9988664
No 39
>PLN02480 Probable pectinesterase
Probab=98.14 E-value=0.00016 Score=68.65 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHHHhhhcCC-CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATG-DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~-~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||. .|-.-||+||+++.. .. ..-+|+|.+| +|. .++.+.-. |+ +++|.+++
T Consensus 55 ~G~-g~f~TIQ~AIdaap~-~~~~~~~I~Ik~G-vY~-E~V~I~~~-kp-~ItL~G~g 106 (343)
T PLN02480 55 NGK-GDFTSVQSAIDAVPV-GNSEWIIVHLRKG-VYR-EKVHIPEN-KP-FIFMRGNG 106 (343)
T ss_pred CCC-CCcccHHHHHhhCcc-CCCceEEEEEcCc-EEE-EEEEECCC-Cc-eEEEEecC
Confidence 443 457899999987654 11 1125889999 897 55656210 34 67777654
No 40
>smart00656 Amb_all Amb_all domain.
Probab=98.10 E-value=0.00031 Score=61.50 Aligned_cols=134 Identities=22% Similarity=0.212 Sum_probs=91.4
Q ss_pred cEEEEeecceEEEeeEEeCCCc------eeEEEeCeecEEEEEEEEECCC----CCCCCCee-ecc-CcccEEEEeeEEE
Q 037736 129 AVYFHNCNNLQVKGITIVNSPK------SHISINTCNGVSVSNIHIDSPE----DSPNTDGI-DIS-FSTQVNILDSSIK 196 (377)
Q Consensus 129 ~i~~~~~~nv~i~~~~i~~~~~------~~i~~~~~~nv~I~~~~i~~~~----~~~~~DGi-~~~-~s~nv~I~n~~i~ 196 (377)
.+.+..++||.|++++|++... .++.+..+++|.|++|++.... .....||. ++. .+.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4666678899999999998533 5899999999999999999741 01124554 443 4789999999998
Q ss_pred eCCceEEEcCCce-------eEEEEceeecCCce--eEeeccCCCCCCCCEEEEEEEceEEeCCc-eeEEEEecCCCCce
Q 037736 197 SGDDCVAINGGSS-------NINITGVACGPGHG--ISVGSLGLDGADDKVEEVHVRNCNFTGTQ-NGARIKTSPGGSGY 266 (377)
Q Consensus 197 ~~dD~i~i~s~~~-------nv~i~n~~~~~~~g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~g~ 266 (377)
..+-+.-++++.+ +|++.+|.+.+..+ -++. .+ .+.+.|+.+.+.. +++.+. .+
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~~--~~---- 176 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGGR--MG---- 176 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEecC--CC----
Confidence 8777777776432 69999999976432 1210 11 6889999888764 444444 22
Q ss_pred EEeEEEEeEEEec
Q 037736 267 ARRISFEHITLIA 279 (377)
Q Consensus 267 i~nI~~~ni~~~~ 279 (377)
..+..|+..+++
T Consensus 177 -~~v~~E~N~F~~ 188 (190)
T smart00656 177 -ATILSEGNYFEA 188 (190)
T ss_pred -cEEEEECeEEEC
Confidence 245555555543
No 41
>PLN02665 pectinesterase family protein
Probab=97.95 E-value=0.0021 Score=61.57 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. |-..||+||+++...+..--+|+|.+| +|. ..+.+.- .|+ +++|++++
T Consensus 75 dG~G-df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~-EkV~Ip~-~kp-~Itl~G~~ 126 (366)
T PLN02665 75 DGSG-DFKTITDAIKSIPAGNTQRVIIDIGPG-EYN-EKITIDR-SKP-FVTLYGSP 126 (366)
T ss_pred CCCC-CccCHHHHHhhCcccCCceEEEEEeCc-EEE-EEEEecC-CCC-EEEEEecC
Confidence 4433 367799999876541112347899999 896 3444410 145 78888764
No 42
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.91 E-value=0.00064 Score=63.70 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhhhcCC-CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 31 DDSDAFAKAWTDFCSATG-DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 31 D~t~aiq~Ai~~a~~~~~-~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
-|-.-||+||+++.. .. ..-+|+|.+| +|. ..|.+.-. |+ +++|.+++
T Consensus 10 gdf~TIq~Aida~p~-~~~~~~~I~I~~G-~Y~-E~V~i~~~-k~-~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPD-NNTSRYTIFIKPG-TYR-EKVTIPRS-KP-NVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-S-SSSS-EEEEE-SE-EEE---EEE-ST-ST-TEEEEES-
T ss_pred CCccCHHHHHHhchh-cCCceEEEEEeCe-eEc-cccEeccc-cc-eEEEEecC
Confidence 346779999987765 22 2348999999 896 33555211 35 78887765
No 43
>PLN02682 pectinesterase family protein
Probab=97.90 E-value=0.0015 Score=62.44 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 32 DSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 32 ~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
|-.-||+||+++...+...-+|+|.+| +|.- .+.+.- .|+ +++|+++|
T Consensus 81 df~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~E-kV~Ip~-~k~-~Itl~G~g 128 (369)
T PLN02682 81 DFTTIQAAIDSLPVINLVRVVIKVNAG-TYRE-KVNIPP-LKA-YITLEGAG 128 (369)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeeE-EEEEec-cCc-eEEEEecC
Confidence 467899999876541112357999999 8953 344411 156 88998875
No 44
>PLN02176 putative pectinesterase
Probab=97.88 E-value=0.0024 Score=60.55 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=33.5
Q ss_pred CCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 26 GDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
.||.. |-.-||+||+++...+...-+++|++| +|.- .|.+.-. |+ +++|+++|
T Consensus 45 ~dGsG-df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~E-kV~Ip~~-k~-~vtl~G~g 97 (340)
T PLN02176 45 PNDAR-YFKTVQSAIDSIPLQNQNWIRILIQNG-IYRE-KVTIPKE-KG-YIYMQGKG 97 (340)
T ss_pred CCCCC-CccCHHHHHhhchhcCCceEEEEECCc-EEEE-EEEECCC-Cc-cEEEEEcC
Confidence 35544 477899999876541112236999999 8963 3444111 55 88888775
No 45
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.87 E-value=0.0036 Score=62.52 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=33.0
Q ss_pred CCCCcchHHHHHHHHHHhhh-cCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 26 GDGKTDDSDAFAKAWTDFCS-ATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~-~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
.||.. |-.-||+||+++.. .....-++||.+| +|.- .+.+.- .|+ +++|+++|
T Consensus 231 ~dGsG-~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~-nItl~G~g 284 (529)
T PLN02170 231 ADGSG-THKTIGEALLSTSLESGGGRTVIYLKAG-TYHE-NLNIPT-KQK-NVMLVGDG 284 (529)
T ss_pred CCCCC-chhhHHHHHHhcccccCCceEEEEEeCC-eeEE-EEecCC-CCc-eEEEEEcC
Confidence 35544 36789999986532 0113457999999 8963 344411 145 88888775
No 46
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.86 E-value=0.0027 Score=61.57 Aligned_cols=54 Identities=7% Similarity=0.095 Sum_probs=33.6
Q ss_pred cCCCCcchHHHHHHHHHHhhhc-CCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 25 IGDGKTDDSDAFAKAWTDFCSA-TGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 25 ~~dg~~D~t~aiq~Ai~~a~~~-~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
.+||.. +-.-||+||+++... ...--+|+|.+| +|.- .|.+.- .|. +++|+++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~E-kV~Ip~-~kp-~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQG-TVYVPA-AAP-PITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCc-eeEE-EEEeCC-CCc-eEEEEecC
Confidence 455644 366899999865430 112347999999 8963 344411 045 89998864
No 47
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.85 E-value=0.0017 Score=57.95 Aligned_cols=121 Identities=27% Similarity=0.459 Sum_probs=71.7
Q ss_pred EEeeEEeCCC------ceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEE
Q 037736 140 VKGITIVNSP------KSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINI 213 (377)
Q Consensus 140 i~~~~i~~~~------~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i 213 (377)
|+++++.... ..++.+..++++.|++|++.+ .+.+|+.+..+....+.+..... ++.+..+..++.+
T Consensus 96 i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 168 (225)
T PF12708_consen 96 IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNVIV 168 (225)
T ss_dssp EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEEEE
T ss_pred EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccce---eeeeccceeEEEE
Confidence 6666665432 245777777777777777776 34566666644444444333221 2333333456666
Q ss_pred EceeecCC-ceeEeeccCCCCCCCCEEEEEEEceEEeC-CceeEEEEecCCCCceEEeEEEEeEEEeccCccE
Q 037736 214 TGVACGPG-HGISVGSLGLDGADDKVEEVHVRNCNFTG-TQNGARIKTSPGGSGYARRISFEHITLIASKNPI 284 (377)
Q Consensus 214 ~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~-~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i 284 (377)
.+|.+..+ .|+..+. ++++++||.+.+ ...|+.+.... ++.++|++++++..+|
T Consensus 169 ~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 169 NNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS-------NIIISNNTIENCDDGI 224 (225)
T ss_dssp ECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS-------EEEEEEEEEESSSEEE
T ss_pred CCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe-------EEEEEeEEEECCccCc
Confidence 77766544 3432221 688888888877 66788877432 3777777777776654
No 48
>PLN02432 putative pectinesterase
Probab=97.85 E-value=0.0025 Score=59.21 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=32.1
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. +-.-||+||+++.......-+++|.+| +|.- .|.+.- .|+ +++|.+++
T Consensus 18 ~Gsg-~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E-~V~ip~-~k~-~itl~G~~ 69 (293)
T PLN02432 18 SGKG-DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYRE-KVVVPA-DKP-FITLSGTQ 69 (293)
T ss_pred CCCC-CccCHHHHHhhccccCCceEEEEEeCc-eeEE-EEEEec-cCc-eEEEEEcC
Confidence 4433 477899999876551112347999999 8933 344410 045 77887764
No 49
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.83 E-value=0.0023 Score=64.73 Aligned_cols=159 Identities=11% Similarity=0.068 Sum_probs=81.0
Q ss_pred CCCcchHHHHHHHHHHhhhcC--CCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceecEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSAT--GDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSL 104 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~--~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~i~~ 104 (377)
||.. +-.-||+||+++.. . ..--+|||.+| +|.- .+.+.- .|. +++|+++|. ....|..
T Consensus 248 dGsg-~f~TIq~Av~a~p~-~~~~~r~vI~vk~G-vY~E-~V~i~~-~k~-~v~l~G~g~-------------~~TiIt~ 308 (553)
T PLN02708 248 DGNC-CYKTVQEAVNAAPD-NNGDRKFVIRIKEG-VYEE-TVRVPL-EKK-NVVFLGDGM-------------GKTVITG 308 (553)
T ss_pred CCCC-CccCHHHHHHhhhh-ccCCccEEEEEeCc-eEEe-eeeecC-CCc-cEEEEecCC-------------CceEEEe
Confidence 4433 46789999987654 2 12348999999 8963 333310 045 888887752 0111211
Q ss_pred eeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeecc-
Q 037736 105 YDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDIS- 183 (377)
Q Consensus 105 ~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~- 183 (377)
. .+....|.++... .-.....+++..+|++|+|...- .....+.+.
T Consensus 309 ~--~~~~~~g~~T~~s--------aT~~v~~~~f~a~~it~~Ntag~-----------------------~~~QAVAlrv 355 (553)
T PLN02708 309 S--LNVGQPGISTYNT--------ATVGVLGDGFMARDLTIQNTAGP-----------------------DAHQAVAFRS 355 (553)
T ss_pred c--CccCCCCcCccce--------EEEEEEcCCeEEEeeEEEcCCCC-----------------------CCCceEEEEe
Confidence 1 0000011111110 22223456777777777775321 011112221
Q ss_pred CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEe
Q 037736 184 FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFT 249 (377)
Q Consensus 184 ~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~ 249 (377)
.+..+.+.||.|....|.+..+++ .-.+++|++.++-.+-+|. ....|+||++.
T Consensus 356 ~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~----------a~avfq~c~i~ 409 (553)
T PLN02708 356 DSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN----------SAAVFQDCAIL 409 (553)
T ss_pred cCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC----------ceEEEEccEEE
Confidence 135666666777665566555542 3456777766655555544 24666666664
No 50
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.80 E-value=0.0024 Score=63.92 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 26 GDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
.||.. +-.-||+||+++.......-++||.+| +|.- .+.+.-. |. +++|.++|
T Consensus 212 ~dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~i~l~G~g 264 (520)
T PLN02201 212 ADGTG-NFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLE-NVEIKKK-KW-NIMMVGDG 264 (520)
T ss_pred CCCCC-CccCHHHHHHhchhcCCCcEEEEEeCc-eeEE-EEEecCC-Cc-eEEEEecC
Confidence 35543 477899999876541223458999999 8953 3444110 44 78888775
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.80 E-value=0.0027 Score=63.61 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=33.4
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. +-.-||+||+++...+..--+|+|.+| +|. ..+.+.-. |. +++|+++|
T Consensus 225 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~~-k~-~itl~G~g 276 (530)
T PLN02933 225 DGTG-NFTTINEAVSAAPNSSETRFIIYIKGG-EYF-ENVELPKK-KT-MIMFIGDG 276 (530)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEcCc-eEE-EEEEecCC-Cc-eEEEEEcC
Confidence 4433 467899999876551112347999999 897 44555211 45 78888775
No 52
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0017 Score=65.32 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. +-.-||+||+++...+...-+|+|.+| +|.-. +.+.- .|. +++|.++|
T Consensus 239 dGsG-~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~-V~I~~-~k~-~i~l~G~g 290 (537)
T PLN02506 239 DGSG-HYRTITEAINEAPNHSNRRYIIYVKKG-VYKEN-IDMKK-KKT-NIMLVGDG 290 (537)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCC-eeeEE-EeccC-CCc-eEEEEEcC
Confidence 4543 467899999876551223358999999 89543 22210 045 88888765
No 53
>PLN02304 probable pectinesterase
Probab=97.75 E-value=0.0041 Score=59.58 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=33.2
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||..| -.-||+||+++.+.+...-+|+|.+| +|. ..|.+.- .|+ +++|+++|
T Consensus 82 dGsGd-f~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~-EkV~Ip~-~K~-~Itl~G~g 133 (379)
T PLN02304 82 NGCCN-FTTVQSAVDAVGNFSQKRNVIWINSG-IYY-EKVTVPK-TKP-NITFQGQG 133 (379)
T ss_pred CCCCC-ccCHHHHHhhCcccCCCcEEEEEeCe-EeE-EEEEECC-CCC-cEEEEecC
Confidence 45433 66899999876541112347999999 896 3344411 156 88998875
No 54
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.72 E-value=0.0054 Score=62.31 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=33.1
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. +-.-||+||+++...+...-+|||.+| +|.- .+.+.-. |. +++|+++|
T Consensus 265 dGsg-~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E-~V~i~~~-k~-~i~~~G~g 316 (565)
T PLN02468 265 DGSG-KYKTISEALKDVPEKSEKRTIIYVKKG-VYFE-NVRVEKK-KW-NVVMVGDG 316 (565)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCC-ceEE-EEEecCC-CC-eEEEEecC
Confidence 4543 357899999876551223458999999 8963 3444110 34 78888776
No 55
>PLN02497 probable pectinesterase
Probab=97.72 E-value=0.0044 Score=58.50 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=32.5
Q ss_pred CCCcchHHHHHHHHHHhhhcCC-CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATG-DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~-~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||..| -.-||+||+++.. .. .--+++|-+| +|.-. +.+.- .|+ +++|+++|
T Consensus 39 dGsGd-f~TIq~AIdavP~-~~~~~~~I~Ik~G-~Y~Ek-V~Ip~-~k~-~itl~G~g 90 (331)
T PLN02497 39 SGHGN-FTTIQSAIDSVPS-NNKHWFCINVKAG-LYREK-VKIPY-DKP-FIVLVGAG 90 (331)
T ss_pred CCCCC-ccCHHHHHhhccc-cCCceEEEEEeCc-EEEEE-EEecC-CCC-cEEEEecC
Confidence 45443 7789999987655 21 2236999999 89433 33310 156 88888765
No 56
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0035 Score=63.90 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||..| -.-||+||+++...+...-+|||.+| +|.-..+.+.- .|. +++|.++|
T Consensus 279 dGsG~-f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~-~k~-ni~l~G~g 331 (587)
T PLN02484 279 DGNGT-FKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGR-KKT-NLMFIGDG 331 (587)
T ss_pred CCCCC-cccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECC-CCc-eEEEEecC
Confidence 45433 66799999876551212357999999 89765455521 145 88888775
No 57
>PLN02916 pectinesterase family protein
Probab=97.71 E-value=0.005 Score=61.23 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCCCcchHHHHHHHHHHhhhc---CCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 26 GDGKTDDSDAFAKAWTDFCSA---TGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~~---~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
.||.. +-.-||+||+++.+. +...-+|+|.+| +|.- .+.+.-. |+ +++|.++|
T Consensus 193 ~dGsG-~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~i~l~G~g 248 (502)
T PLN02916 193 RDGSG-THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNE-KVEIDRH-MK-NVMFVGDG 248 (502)
T ss_pred CCCCC-CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeE-EEEecCC-Cc-eEEEEecC
Confidence 34533 466899999876530 112347999999 8963 3444110 45 78888775
No 58
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.70 E-value=0.0037 Score=63.07 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=32.9
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. |-.-||+||+++.+.+..--+|+|.+| +|.- .+.+.- .|. +++|+++|
T Consensus 243 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E-~V~i~~-~k~-~i~l~G~g 294 (548)
T PLN02301 243 DGSG-KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKE-NVEIGK-KKK-NLMLVGDG 294 (548)
T ss_pred CCCC-CcccHHHHHHhhhhcCCceEEEEEeCc-eeeE-EEEecC-CCc-eEEEEecC
Confidence 4433 477899999876551112347999999 8954 344411 045 88888776
No 59
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.0036 Score=63.84 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=77.7
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceecEEEee
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYD 106 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~ 106 (377)
||.. +-.-||+||+++.......-+++|.+| +|.- .+.+.-. |. +++|+++|. ....|....
T Consensus 292 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~i~l~G~g~-------------~~TiIt~~~ 353 (596)
T PLN02745 292 DGSG-NFTTISDALAAMPAKYEGRYVIYVKQG-IYDE-TVTVDKK-MV-NVTMYGDGS-------------QKTIVTGNK 353 (596)
T ss_pred CCCC-CcccHHHHHHhccccCCceEEEEEeCC-eeEE-EEEEcCC-Cc-eEEEEecCC-------------CceEEEECC
Confidence 4433 467899999876551112357999999 8964 3444210 45 888887751 011121110
Q ss_pred eeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCc----eeEEEe-CeecEEEEEEEEECCCCCCCCCeee
Q 037736 107 VQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPK----SHISIN-TCNGVSVSNIHIDSPEDSPNTDGID 181 (377)
Q Consensus 107 ~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~ 181 (377)
+. ..|.++... .-.....+++..++++|+|... ..+-+. .++...+.+|+|... .|-+.
T Consensus 354 --~~-~~g~~T~~s--------aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~-----QDTLy 417 (596)
T PLN02745 354 --NF-ADGVRTFRT--------ATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGY-----QDTLY 417 (596)
T ss_pred --cc-cCCCcceee--------EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeec-----ccccc
Confidence 00 011111110 2233366788888888887532 122222 356666666666652 22233
Q ss_pred ccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceee
Q 037736 182 ISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVAC 218 (377)
Q Consensus 182 ~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~ 218 (377)
... ..-..++|+|...=|-|- |.-...++||.+
T Consensus 418 ~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i 450 (596)
T PLN02745 418 AQT-HRQFYRSCVITGTIDFIF---GDAAAIFQNCLI 450 (596)
T ss_pred cCC-CcEEEEeeEEEeeccEEe---cceeEEEEecEE
Confidence 222 345666666665433321 234556666665
No 60
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.0027 Score=64.36 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=80.5
Q ss_pred CCCCcchHHHHHHHHHHhhhcCC----CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceec
Q 037736 26 GDGKTDDSDAFAKAWTDFCSATG----DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCW 101 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~~~~----~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~ 101 (377)
.||.. +-.-||+||+++.. .. +--++||.+| +|.- .+.+.- .|. +++|+++|. ....
T Consensus 256 ~dGsG-~f~TIq~Av~a~p~-~~~~~~~~~vI~Ik~G-~Y~E-~V~i~~-~k~-~i~l~G~g~-------------~~Ti 316 (566)
T PLN02713 256 QNGTG-NFTTINDAVAAAPN-NTDGSNGYFVIYVTAG-VYEE-YVSIPK-NKK-YLMMIGDGI-------------NQTV 316 (566)
T ss_pred CCCCC-CCCCHHHHHHhhhc-ccCCCCceEEEEEcCc-EEEE-EEEecC-CCc-eEEEEecCC-------------CCcE
Confidence 34543 36789999987654 21 1247999999 8963 344411 045 788887761 0112
Q ss_pred EEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCc----eeEEEe-CeecEEEEEEEEECCCCCCC
Q 037736 102 LSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPK----SHISIN-TCNGVSVSNIHIDSPEDSPN 176 (377)
Q Consensus 102 i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~ 176 (377)
|..... . ..|.++... .-.....+++..++++|+|... .++-+. .++...+.+|+|.. .
T Consensus 317 It~~~~--~-~~g~~T~~S--------aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~ 380 (566)
T PLN02713 317 ITGNRS--V-VDGWTTFNS--------ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA-----Y 380 (566)
T ss_pred EEcCCc--c-cCCCccccc--------eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc-----C
Confidence 211100 0 012112111 2233355788888888888532 122222 45666677777765 2
Q ss_pred CCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceee
Q 037736 177 TDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVAC 218 (377)
Q Consensus 177 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~ 218 (377)
.|-+.... ..-..++|+|...=|-|- |.-...++||.+
T Consensus 381 QDTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i 418 (566)
T PLN02713 381 QDTLYTHS-LRQFYRECDIYGTVDFIF---GNAAVVFQNCNL 418 (566)
T ss_pred CcceEECC-CCEEEEeeEEecccceec---ccceEEEeccEE
Confidence 33344333 345667777766434331 234566666666
No 61
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.67 E-value=0.0088 Score=59.32 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.1
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||. -+-.-||+||+++.+.+..--++||.+| +|.- .+.+.- .|. +++|.++|
T Consensus 204 dGs-G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~-nItliGdg 255 (509)
T PLN02488 204 DGS-GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDE-IVRIGS-TKP-NLTLIGDG 255 (509)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEE-EEEecC-CCc-cEEEEecC
Confidence 443 3466899999876551212357999999 8964 344410 145 88888775
No 62
>PLN02634 probable pectinesterase
Probab=97.67 E-value=0.011 Score=56.36 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=33.2
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. |-.-||+||+++...+...-+++|-+| +|.- .|.+.- .|+ +++|+++|
T Consensus 63 dGsG-df~TIQaAIda~P~~~~~r~vI~Ik~G-vY~E-kV~Ip~-~k~-~ItL~G~g 114 (359)
T PLN02634 63 NGHG-DFRSVQDAVDSVPKNNTMSVTIKINAG-FYRE-KVVVPA-TKP-YITFQGAG 114 (359)
T ss_pred CCCC-CccCHHHHHhhCcccCCccEEEEEeCc-eEEE-EEEEcC-CCC-eEEEEecC
Confidence 4543 477899999876541112347999999 8953 334410 155 88888875
No 63
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.60 E-value=0.0037 Score=63.10 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. |-.-||+||+++...+...-+|+|.+| +|.- .+.+.- .|+ +++|.++|
T Consensus 237 dGsG-~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~-~k~-~i~l~G~g 288 (541)
T PLN02416 237 DGTG-NFSTITDAINFAPNNSNDRIIIYVREG-VYEE-NVEIPI-YKT-NIVLIGDG 288 (541)
T ss_pred CCCC-CccCHHHHHHhhhhcCCceEEEEEeCc-eeEE-EEecCC-CCc-cEEEEecC
Confidence 4433 467899999876551112346899999 8953 344410 045 88888776
No 64
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.58 E-value=0.0027 Score=56.09 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=73.5
Q ss_pred EeecceEEEeeEEeC---------------CCceeEEEeCeecEEEEEEEEECCCC---CCCCCe-eecc-CcccEEEEe
Q 037736 133 HNCNNLQVKGITIVN---------------SPKSHISINTCNGVSVSNIHIDSPED---SPNTDG-IDIS-FSTQVNILD 192 (377)
Q Consensus 133 ~~~~nv~i~~~~i~~---------------~~~~~i~~~~~~nv~I~~~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 192 (377)
.+++||.|++++|+. ....++.+..+++|.|++|++..... ....|| +++. .+.+|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 488899999999988 23457999999999999999997511 111455 5665 478999999
Q ss_pred eEEEeCCceEEEcCC-------ceeEEEEceeecCCce--eEeeccCCCCCCCCEEEEEEEceEEeC-CceeEEEE
Q 037736 193 SSIKSGDDCVAINGG-------SSNINITGVACGPGHG--ISVGSLGLDGADDKVEEVHVRNCNFTG-TQNGARIK 258 (377)
Q Consensus 193 ~~i~~~dD~i~i~s~-------~~nv~i~n~~~~~~~g--i~igs~~~~~~~~~i~ni~i~n~~~~~-~~~gi~i~ 258 (377)
|.|...+.+..+++. ..++++-+|.+.+... =.+ ..-.+++-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 999886544444442 3689999999864322 111 11257888886654 44566655
No 65
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.56 E-value=0.0074 Score=61.37 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=33.6
Q ss_pred CCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 26 GDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
.||.. +-.-||+||+++...+..--++||.+| +|.- .+.+.- .|. +++|+++|
T Consensus 265 ~dGsG-~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~-~k~-~i~l~G~g 317 (572)
T PLN02990 265 QDGSG-QYKTINEALNAVPKANQKPFVIYIKQG-VYNE-KVDVTK-KMT-HVTFIGDG 317 (572)
T ss_pred CCCCC-CCcCHHHHHhhCcccCCceEEEEEeCc-eeEE-EEEecC-CCC-cEEEEecC
Confidence 34543 366799999876541112347999999 8964 344411 145 88888876
No 66
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.55 E-value=0.0068 Score=61.90 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. +-.-||+||+++...+..--+|||.+| +|.- .+.+.- .|. +++|.++|
T Consensus 282 dGsG-~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E-~V~i~~-~k~-ni~l~Gdg 333 (587)
T PLN02313 282 DGSG-DFTTVAAAVAAAPEKSNKRFVIHIKAG-VYRE-NVEVTK-KKK-NIMFLGDG 333 (587)
T ss_pred CCCC-CCccHHHHHHhccccCCceEEEEEeCc-eeEE-EEEeCC-CCC-eEEEEecC
Confidence 4533 467899999876541212348999999 8964 333311 034 78887775
No 67
>PLN02671 pectinesterase
Probab=97.51 E-value=0.012 Score=56.26 Aligned_cols=52 Identities=12% Similarity=0.023 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. |-.-||+||+++.......-+|+|.+| +|.- .|.+.- .|+ +++|+++|
T Consensus 66 dGsG-df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~E-kV~I~~-~k~-~Itl~G~g 117 (359)
T PLN02671 66 NGGG-DSLTVQGAVDMVPDYNSQRVKIYILPG-IYRE-KVLVPK-SKP-YISFIGNE 117 (359)
T ss_pred CCCC-CccCHHHHHHhchhcCCccEEEEEeCc-eEEE-EEEECC-CCC-eEEEEecC
Confidence 4544 377899999876551112348999999 8963 344411 155 78887764
No 68
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.51 E-value=0.01 Score=60.06 Aligned_cols=154 Identities=8% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCCCcchHHHHHHHHHHhhhcCC----CCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceec
Q 037736 26 GDGKTDDSDAFAKAWTDFCSATG----DSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCW 101 (377)
Q Consensus 26 ~dg~~D~t~aiq~Ai~~a~~~~~----~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~ 101 (377)
.||.. +-.-||+||+++.. .. +--++||.+| +|.- .|.+.- .|. +++|.++|. ....
T Consensus 229 ~dGsG-~f~TI~~Av~a~p~-~~~~~~~r~vI~vk~G-~Y~E-~V~i~~-~k~-~i~l~G~g~-------------~~ti 289 (538)
T PLN03043 229 PYGTD-NFTTITDAIAAAPN-NSKPEDGYFVIYAREG-YYEE-YVVVPK-NKK-NIMLIGDGI-------------NKTI 289 (538)
T ss_pred CCCCC-CCcCHHHHHHhccc-cCCCCcceEEEEEcCe-eeEE-EEEeCC-CCC-cEEEEecCC-------------CCeE
Confidence 35543 47789999986654 21 1238999999 8953 344411 045 888887761 1122
Q ss_pred EEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCc----eeEEEe-CeecEEEEEEEEECCCCCCC
Q 037736 102 LSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPK----SHISIN-TCNGVSVSNIHIDSPEDSPN 176 (377)
Q Consensus 102 i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~ 176 (377)
|... .++ ..|.+++. ..-.....+++..++++|+|... -++-+. .++...+.+|+|...
T Consensus 290 It~~--~~~-~dg~~T~~--------saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy----- 353 (538)
T PLN03043 290 ITGN--HSV-VDGWTTFN--------SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY----- 353 (538)
T ss_pred EEeC--Ccc-CCCCcccc--------ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc-----
Confidence 2211 000 01111111 13333456788888888887532 122222 345566666666652
Q ss_pred CCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceee
Q 037736 177 TDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVAC 218 (377)
Q Consensus 177 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~ 218 (377)
.|-+.... ..-..++|+|...=|-|- |.-...++||.+
T Consensus 354 QDTLy~~~-~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i 391 (538)
T PLN03043 354 QDTLYVHS-LRQFYRECDIYGTVDFIF---GNAAAIFQNCNL 391 (538)
T ss_pred CcccccCC-CcEEEEeeEEeeccceEe---ecceeeeeccEE
Confidence 23333322 234566666665433331 223455666655
No 69
>PLN02314 pectinesterase
Probab=97.51 E-value=0.0074 Score=61.65 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. +-.-||+||+++...+..--+|||.+| +|.- .+.+.-. |. +++|+++|
T Consensus 285 dGsg-~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E-~V~i~~~-k~-~i~l~G~g 336 (586)
T PLN02314 285 DGSG-DVKTINEAVASIPKKSKSRFVIYVKEG-TYVE-NVLLDKS-KW-NVMIYGDG 336 (586)
T ss_pred CCCC-CccCHHHHHhhccccCCceEEEEEcCc-eEEE-EEEecCC-Cc-eEEEEecC
Confidence 4433 356799999876541112347999999 8963 3434110 45 78888775
No 70
>PLN02197 pectinesterase
Probab=97.47 E-value=0.011 Score=60.21 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=76.9
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceecEEEee
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYD 106 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~ 106 (377)
||.. |-.-||+||+++...+..--++||.+| +|.- .+.+.- .|. +++|+++|. ....|....
T Consensus 282 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~-ni~l~G~g~-------------~~TiIt~~~ 343 (588)
T PLN02197 282 DGSG-QFKTISQAVMACPDKNPGRCIIHIKAG-IYNE-QVTIPK-KKN-NIFMFGDGA-------------RKTVISYNR 343 (588)
T ss_pred CCCC-CcCCHHHHHHhccccCCceEEEEEeCc-eEEE-EEEccC-CCc-eEEEEEcCC-------------CCeEEEecc
Confidence 4433 467899999876551112246999999 8964 334411 045 888888761 112222111
Q ss_pred eeceEE-EeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCc----eeEEEe-CeecEEEEEEEEECCCCCCCCCee
Q 037736 107 VQGLSI-DGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPK----SHISIN-TCNGVSVSNIHIDSPEDSPNTDGI 180 (377)
Q Consensus 107 ~~ni~I-~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi 180 (377)
+... .|.++... .-.....+++..++++|+|... .++-+. .++...+.+|+|.. ..|-+
T Consensus 344 --~~~~~~g~~T~~S--------aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----yQDTL 408 (588)
T PLN02197 344 --SVKLSPGTTTSLS--------GTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDG-----YQDTL 408 (588)
T ss_pred --ccccCCCCcccce--------eEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEe-----cCcce
Confidence 1100 11111110 2233356778888888888532 222222 34566666666665 22333
Q ss_pred eccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceee
Q 037736 181 DISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVAC 218 (377)
Q Consensus 181 ~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~ 218 (377)
.... ..-..++|+|...=|-|- |.....++||.+
T Consensus 409 y~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i 442 (588)
T PLN02197 409 YVNN-GRQFYRNIVVSGTVDFIF---GKSATVIQNSLI 442 (588)
T ss_pred EecC-CCEEEEeeEEEecccccc---cceeeeeecCEE
Confidence 3332 234566666665433321 223355666655
No 71
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.44 E-value=0.012 Score=59.41 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=33.2
Q ss_pred CCCcchHHHHHHHHHHhhhc--CCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEE
Q 037736 27 DGKTDDSDAFAKAWTDFCSA--TGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSG 83 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~--~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G 83 (377)
||.. |-.-||+||+++... +...-+|+|.+| +|.-. +.+.- .|. +++|.++|
T Consensus 230 dGsG-~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~-~k~-~i~l~G~g 283 (539)
T PLN02995 230 DGSG-HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVRL-NND-DIMLVGDG 283 (539)
T ss_pred CCCC-CccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEecC-CCC-cEEEEEcC
Confidence 4533 467899999876430 113457999999 89654 33310 155 88898876
No 72
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.39 E-value=0.015 Score=59.81 Aligned_cols=211 Identities=13% Similarity=0.081 Sum_probs=115.9
Q ss_pred CCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceecEEEee
Q 037736 27 DGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYD 106 (377)
Q Consensus 27 dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~ 106 (377)
||.. +-.-||+||+++...+..--+|||.+| +|.- .+.+.-. |. +++|.++|. ....|....
T Consensus 257 dGsG-~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~i~l~Gdg~-------------~~TiIt~~~ 318 (670)
T PLN02217 257 DGSG-QYKTINEALNFVPKKKNTTFVVHIKAG-IYKE-YVQVNRS-MT-HLVFIGDGP-------------DKTVISGSK 318 (670)
T ss_pred CCCC-CccCHHHHHHhccccCCceEEEEEeCC-ceEE-EEEEcCC-CC-cEEEEecCC-------------CCeEEEcCC
Confidence 4433 467899999876541112347999999 8954 3344110 34 777777651 011111110
Q ss_pred eeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCc----eeEEEe-CeecEEEEEEEEECCCCCCCCCeee
Q 037736 107 VQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPK----SHISIN-TCNGVSVSNIHIDSPEDSPNTDGID 181 (377)
Q Consensus 107 ~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~ 181 (377)
+. -.|.++. .. .-.....+++..+|++|+|... ..+-+. .++...+.+|+|... .|-+.
T Consensus 319 --~~-~dg~~T~-------~S-AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~-----QDTLy 382 (670)
T PLN02217 319 --SY-KDGITTY-------KT-ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGY-----QDTLY 382 (670)
T ss_pred --cc-CCCCCcc-------ce-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeec-----cchhc
Confidence 00 0111111 11 2233356788889999988642 233333 578889999999873 34444
Q ss_pred ccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCC-----ceeEeeccCCCCCCCCEEEEEEEceEEeCCcee--
Q 037736 182 ISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPG-----HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNG-- 254 (377)
Q Consensus 182 ~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~-----~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~g-- 254 (377)
... .+-.+++|+|...=|-|- |.-...++||.+..- ..-.|-..+ +.....-..+.|.||++.....-
T Consensus 383 ~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqg-r~~~~~~tGfvf~~C~i~~~~~~~~ 457 (670)
T PLN02217 383 AHS-HRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHG-RKDPRESTGFVLQGCTIVGEPDYLA 457 (670)
T ss_pred cCC-CcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCC-CCCCCCCceEEEEeeEEecCccccc
Confidence 443 456889999988545442 335688899988521 111121111 11123446799999999875321
Q ss_pred ------EEEE-ecCCCCceEEeEEEEeEEEecc
Q 037736 255 ------ARIK-TSPGGSGYARRISFEHITLIAS 280 (377)
Q Consensus 255 ------i~i~-~~~~~~g~i~nI~~~ni~~~~~ 280 (377)
.++. .| ..-..+.|.+..|.+.
T Consensus 458 ~~~~~~~yLGRPW----~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 458 VKETSKAYLGRPW----KEYSRTIIMNTFIPDF 486 (670)
T ss_pred cccccceeeccCC----CCCceEEEEecccCCe
Confidence 2222 12 2245677777776653
No 73
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.30 E-value=0.046 Score=52.37 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=33.7
Q ss_pred EccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEee-eeeeeCCCCCcceEEEEEE-EEEc
Q 037736 19 VVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLK-STTFRGPCKSNSVNIQVSG-TIVA 87 (377)
Q Consensus 19 v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~-~l~l~~~~~s~~v~l~~~G-~i~~ 87 (377)
|+.|=+.|+. -+.+||+. ..+|++-||.+|.+. ++.+ ++ -.+|.+.| +++.
T Consensus 46 vkt~~~~P~e------Dle~~I~~-------haKVaL~Pg~~Y~i~~~V~I----~~-~cYIiGnGA~V~v 98 (386)
T PF01696_consen 46 VKTYWMEPGE------DLEEAIRQ-------HAKVALRPGAVYVIRKPVNI----RS-CCYIIGNGATVRV 98 (386)
T ss_pred EEEEEcCCCc------CHHHHHHh-------cCEEEeCCCCEEEEeeeEEe----cc-eEEEECCCEEEEE
Confidence 4445555533 34556632 457999999899875 6888 56 78888875 5554
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.21 E-value=0.00037 Score=47.60 Aligned_cols=38 Identities=29% Similarity=0.275 Sum_probs=23.0
Q ss_pred ccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeee
Q 037736 24 AIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKST 66 (377)
Q Consensus 24 a~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l 66 (377)
|+|||++|||+||.+||++ .. .+.+.=-.|-||.+.+|
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~~----~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-SP----VGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S-----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhc-cC----CCeEEecCCceEEEeeC
Confidence 7899999999999999964 33 34444555669999875
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.069 Score=49.49 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHhhhcCCC--CcEEEecCCcEEEeeeeeeeCCCCC-cceEEEEEE------EEEcCCCCCcCCCCceec
Q 037736 31 DDSDAFAKAWTDFCSATGD--SATLEIPANKAFLLKSTTFRGPCKS-NSVNIQVSG------TIVAPDSKSWKQCGSQCW 101 (377)
Q Consensus 31 D~t~aiq~Ai~~a~~~~~~--g~~V~iP~G~~Y~~~~l~l~~~~~s-~~v~l~~~G------~i~~~~~~~~~~~~~~~~ 101 (377)
++-..||+|+|+|.. ..+ -..+.+-+| .|.- .|.+. ++ -.++|++++ +|-+... .=+ +...+
T Consensus 92 ~~f~TIQaAvdaA~~-~~~~kr~yI~vk~G-vY~e-~v~Vp---~~~~~ITLyGed~~~~~tvIg~n~a-agp--~np~~ 162 (405)
T COG4677 92 VTFTTIQAAVDAAII-KRTNKRQYIAVKAG-VYQE-TVYVP---AAPGGITLYGEDEKPIDTVIGLNLA-AGP--GNPAG 162 (405)
T ss_pred cchHHHHHHHhhhcc-cCCCceEEEEEccc-eece-eEEec---CCCCceeEEecCCCCcceEEEEecC-CCC--CCccc
Confidence 667889999998766 333 345778899 7843 33442 22 048888764 1221111 000 11112
Q ss_pred EEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCCCcee--------E-EEeCeecEEEEEEEEECCC
Q 037736 102 LSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSH--------I-SINTCNGVSVSNIHIDSPE 172 (377)
Q Consensus 102 i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~--------i-~~~~~~nv~I~~~~i~~~~ 172 (377)
.....|.--+..-.|++.. .-.+..-+++..+++++++....+ + ....++.+.+++|++....
T Consensus 163 ~m~n~c~ss~~~tigt~~S--------at~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~Q 234 (405)
T COG4677 163 YMYNSCQSSRSATIGTLCS--------ATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQ 234 (405)
T ss_pred eeecccccchhhhhhhhhh--------hhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeecc
Confidence 2222222100000022211 222334456666777777654332 2 2225667788888887632
Q ss_pred CCCCCCeeeccCc-----------ccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCC------ce-eEeeccCCCCC
Q 037736 173 DSPNTDGIDISFS-----------TQVNILDSSIKSGDDCVAINGGSSNINITGVACGPG------HG-ISVGSLGLDGA 234 (377)
Q Consensus 173 ~~~~~DGi~~~~s-----------~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~------~g-i~igs~~~~~~ 234 (377)
+ -+....+ -.-.++||+|+..=|-| . |+--..+.+|.+... .| |.--|. .
T Consensus 235 d-----TlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfI-f--GsgtaVFd~c~i~~~d~r~~~~gYIfApST----~ 302 (405)
T COG4677 235 D-----TLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFI-F--GSGTAVFDNCEIQVVDSRTQQEGYIFAPST----L 302 (405)
T ss_pred c-----eEEecCCCCccccccCcchhhheecceecccceEE-e--ccceEEeccceEEEeccCCCcceeEeccCC----C
Confidence 2 2222111 14467788887644433 2 334566777766321 12 111111 1
Q ss_pred CCCEEEEEEEceEEeCCce-e-EEEE-ecCCCCceEEeEEEEeEEEe
Q 037736 235 DDKVEEVHVRNCNFTGTQN-G-ARIK-TSPGGSGYARRISFEHITLI 278 (377)
Q Consensus 235 ~~~i~ni~i~n~~~~~~~~-g-i~i~-~~~~~~g~i~nI~~~ni~~~ 278 (377)
.+..-...+-|+++..... + +.+. .|.........+.|+|..|.
T Consensus 303 ~~~~YGflalNsrfna~g~~~s~~LGRpwd~~a~~nGQvVirds~m~ 349 (405)
T COG4677 303 SGIPYGFLALNSRFNASGDAGSAQLGRPWDVDANTNGQVVIRDSVMG 349 (405)
T ss_pred CCCceeEEEEeeeeecCCCCCeeeecCccccccccCceEEEEecccc
Confidence 3344556677777765433 1 2232 22222233445667766665
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.018 Score=53.60 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=38.0
Q ss_pred cEEEEeecceEEEeeEEeCC-------CceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe
Q 037736 129 AVYFHNCNNLQVKGITIVNS-------PKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS 197 (377)
Q Consensus 129 ~i~~~~~~nv~i~~~~i~~~-------~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 197 (377)
.|.+.++.++.|++.++..- ..-++++..+.+..|....|. ...|||....|++-.+++..++.
T Consensus 122 Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndis-----y~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 122 GIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDIS-----YGRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred EEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccc-----cccceEEEcccccceecccchhh
Confidence 56677777777777777542 234566666666666555554 34555555555555555555544
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=96.20 E-value=0.19 Score=45.86 Aligned_cols=168 Identities=11% Similarity=0.150 Sum_probs=91.1
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeeccC-----cccEEEEeeEEEeCCceEE---EcCCceeEEEEceeecC--CceeEe
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDISF-----STQVNILDSSIKSGDDCVA---INGGSSNINITGVACGP--GHGISV 226 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~~-----s~nv~I~n~~i~~~dD~i~---i~s~~~nv~i~n~~~~~--~~gi~i 226 (377)
..+++.|+++.+..-. +- --|.+.+ -+|.+|++.++....-+|- ++.......|.||.|.. +..|.+
T Consensus 120 rgsdc~ikgiamsgfg--pv-tqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~dgaritn~rfs~lqgdaiew 196 (464)
T PRK10123 120 RGSDCTIKGLAMSGFG--PV-TQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEW 196 (464)
T ss_pred ccCceEEeeeeecccC--ce-eEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhccccceeeccccccccCceEEE
Confidence 3457778887776521 11 1133332 4688888888876443331 12235678899999975 333433
Q ss_pred eccCCCCCCCCEEEEEEEceEEeCCc--eeEEEEecCC-------CCceEEeEEEEeEEEeccCccEEEEeeecCCCCCC
Q 037736 227 GSLGLDGADDKVEEVHVRNCNFTGTQ--NGARIKTSPG-------GSGYARRISFEHITLIASKNPIIIDQHYCVGGGGC 297 (377)
Q Consensus 227 gs~~~~~~~~~i~ni~i~n~~~~~~~--~gi~i~~~~~-------~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~ 297 (377)
--.-.+ ..--+++=.++.+.+.+.. -|+.|..... ..-.++|..+.||+-.+|.+-+.+..
T Consensus 197 nvaind-r~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--------- 266 (464)
T PRK10123 197 NVAIND-RDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--------- 266 (464)
T ss_pred EEEecc-cceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC---------
Confidence 211100 1233444455555555542 2555543211 12358999999999998877766652
Q ss_pred CCCcceEEEeEEEEeEEEeeCCc-----ceEEEecCCCceecEEEEeEEEE
Q 037736 298 KGTSAVNVSEVTYSDVQGSSADE-----KAITFDCSEEGCFGIKMEQVSIT 343 (377)
Q Consensus 298 ~~~~~~~i~ni~f~ni~~~~~~~-----~~~~i~~~~~~i~~i~~~nv~i~ 343 (377)
....-|+||.-+||+-...++ ..+-|.| |+|..++|+.+.
T Consensus 267 --gkhfvirnvkaknitpdfskkagidnatvaiyg----cdnfvidni~mv 311 (464)
T PRK10123 267 --GKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG----CDNFVIDNIEMI 311 (464)
T ss_pred --CcEEEEEeeeccccCCCchhhcCCCcceEEEEc----ccceEEeccccc
Confidence 234567777777776433221 2233444 555555555543
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.89 E-value=0.41 Score=42.37 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=31.7
Q ss_pred cEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe-CCceEEEcCCceeEEEEceeecC
Q 037736 160 GVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS-GDDCVAINGGSSNINITGVACGP 220 (377)
Q Consensus 160 nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~s~~~nv~i~n~~~~~ 220 (377)
..+|+|+.|-. +..||||..+ +.+|+|+.+.. ..|++.++.....++|.+.-..+
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~ 117 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARN 117 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccC
Confidence 44555555543 3556777665 66777777766 66777777644455555554443
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.28 E-value=2.9 Score=40.38 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=49.9
Q ss_pred eecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe-CCceEEEcCCceeEEEEceeecCCc-eeEeeccCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS-GDDCVAINGGSSNINITGVACGPGH-GISVGSLGLDGAD 235 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~s~~~nv~i~n~~~~~~~-gi~igs~~~~~~~ 235 (377)
=.+|++.|+++...+ ...|+-+....++++.+|.|.+ ...|+.... ...+++|+|.+.+ |+. .
T Consensus 120 M~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~---------~ 184 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIV---------S 184 (386)
T ss_pred eeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEee---------c
Confidence 356777777777643 2345555566777788887777 333443333 5667777775442 332 1
Q ss_pred CCEEEEEEEceEEeCCceeE
Q 037736 236 DKVEEVHVRNCNFTGTQNGA 255 (377)
Q Consensus 236 ~~i~ni~i~n~~~~~~~~gi 255 (377)
.+...+.|++|+|+.+.-|+
T Consensus 185 ~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred CCcceEEeeheeeeheEEEE
Confidence 34456777777777775565
No 80
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=95.14 E-value=0.51 Score=46.06 Aligned_cols=216 Identities=14% Similarity=0.183 Sum_probs=92.3
Q ss_pred EEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEEeeEEeCC--Cc-----eeE--EEeCeecEEEEEEEEECCC
Q 037736 102 LSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNS--PK-----SHI--SINTCNGVSVSNIHIDSPE 172 (377)
Q Consensus 102 i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~--~~-----~~i--~~~~~~nv~I~~~~i~~~~ 172 (377)
+..+....+.|.|... +.+. .+.++|+|+.|++. +. +.. ....+.+.++.+|.|..-.
T Consensus 46 l~Ae~~G~vvi~G~s~------------l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn 112 (425)
T PF14592_consen 46 LRAENPGKVVITGESN------------LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFN 112 (425)
T ss_dssp EEESSTTSEEEEES-E------------EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--
T ss_pred EEecCCCeEEEeccee------------EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccC
Confidence 4444455566666332 3332 46788889998762 21 111 1124778889999888632
Q ss_pred CCCCCC--eeec----cCcccEEEEeeEEEeC---CceEEEc-------CCceeEEEEceeecC-----Cc---eeEeec
Q 037736 173 DSPNTD--GIDI----SFSTQVNILDSSIKSG---DDCVAIN-------GGSSNINITGVACGP-----GH---GISVGS 228 (377)
Q Consensus 173 ~~~~~D--Gi~~----~~s~nv~I~n~~i~~~---dD~i~i~-------s~~~nv~i~n~~~~~-----~~---gi~igs 228 (377)
. +..+ ...+ ...++-+|++|.|.+. .--+.+. ....+.+|.+|+|.. ++ .|+||.
T Consensus 113 ~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~ 191 (425)
T PF14592_consen 113 N-PDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGT 191 (425)
T ss_dssp S-S-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-S
T ss_pred C-cccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEec
Confidence 2 1111 1222 2368889999999872 2234444 113466789998852 22 388876
Q ss_pred cCCCCCCCCEEEEEEEceEEeCCce---eEEEEecCCCCceEEeEEEEeEEEeccCccEEEEee----------ecCCCC
Q 037736 229 LGLDGADDKVEEVHVRNCNFTGTQN---GARIKTSPGGSGYARRISFEHITLIASKNPIIIDQH----------YCVGGG 295 (377)
Q Consensus 229 ~~~~~~~~~i~ni~i~n~~~~~~~~---gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~----------~~~~~~ 295 (377)
... ...-.+.+|+++.|+++.. -|++|+. +-+|++.++..+.-.+.+... .+....
T Consensus 192 S~~---S~~~s~t~Ve~NlFe~cdGE~EIISvKS~--------~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~ 260 (425)
T PF14592_consen 192 SHS---SMSDSNTTVENNLFERCDGEVEIISVKSS--------DNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVK 260 (425)
T ss_dssp STT----B-----EEES-EEEEE-SSSEEEEEESB--------T-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SSS
T ss_pred ccc---cccccceeeecchhhhcCCceeEEEeecC--------CceEeccEEEeccceEEEecCCCceEeccEEecCCCc
Confidence 431 3444778888888887743 4566642 234455555555444433321 011100
Q ss_pred -CCC----CCcceEEEeEEEEeEEEeeCCcceEE-Eec-CCC------ceecEEEEeEEEE
Q 037736 296 -GCK----GTSAVNVSEVTYSDVQGSSADEKAIT-FDC-SEE------GCFGIKMEQVSIT 343 (377)
Q Consensus 296 -~~~----~~~~~~i~ni~f~ni~~~~~~~~~~~-i~~-~~~------~i~~i~~~nv~i~ 343 (377)
.++ -.++..|.|-.|++++++.-. .++. +.| |.. .++++.+.+-++-
T Consensus 261 ~~tGGIRIi~~~H~I~nNY~~gl~g~~~~-~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~I 320 (425)
T PF14592_consen 261 EGTGGIRIIGEGHTIYNNYFEGLTGTRFR-GALAVMNGVPNSPLNRYDQVKNVLIANNTFI 320 (425)
T ss_dssp S-B--EEE-SBS-EEES-EEEESSB-TTT-TSEE-EEE--BSTTSTT---BSEEEES-EEE
T ss_pred CCCCceEEecCCcEEEcceeeccccceee-cceeeccCCCCCCcccccccceeEEecceEE
Confidence 011 234568899999999876543 3443 556 433 3566666655554
No 81
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.01 E-value=2.4 Score=37.59 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=79.7
Q ss_pred cceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcc-cEEEEeeEEEeCCceEEEcCCceeEEEE
Q 037736 136 NNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFST-QVNILDSSIKSGDDCVAINGGSSNINIT 214 (377)
Q Consensus 136 ~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~s~~~nv~i~ 214 (377)
+.-+|+++.|-.....+||... +.+|+|+.... -..|.+.+.+.. .++|.+.-.+..+|=+-=+.+.-.+.|+
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~ 134 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK 134 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence 4667777777666667888887 78899988887 467788887766 7888888888866655444456678888
Q ss_pred ceeecCCceeEeeccCCCCCC-CCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEe
Q 037736 215 GVACGPGHGISVGSLGLDGAD-DKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEH 274 (377)
Q Consensus 215 n~~~~~~~gi~igs~~~~~~~-~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~n 274 (377)
|-+.. ..|--+-|.+.-... +.-+++.+++........-..|...+++...++++.+..
T Consensus 135 nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 135 NFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp EEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred eEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 85543 123222222211111 244666666655443333456666677777777776665
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.89 E-value=0.085 Score=34.10 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=18.9
Q ss_pred eeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceee
Q 037736 179 GIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVAC 218 (377)
Q Consensus 179 Gi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~ 218 (377)
||.++.+.+.+|+++.+....+||.+.. +.+.+++++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 3444445555555555555444555554 33444444443
No 83
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.44 E-value=0.14 Score=33.12 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.6
Q ss_pred eEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe
Q 037736 152 HISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS 197 (377)
Q Consensus 152 ~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 197 (377)
+|.+..+.+.+|++.++.. +.+||++..+++-+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3556666777777777776 5668888887777777777764
No 84
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.34 E-value=6.1 Score=35.91 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred EEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEe-CCceEEEcCCceeEEEEceeecCCceeEeeccCC
Q 037736 153 ISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKS-GDDCVAINGGSSNINITGVACGPGHGISVGSLGL 231 (377)
Q Consensus 153 i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~ 231 (377)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.. ..++ +.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~G----------------------I~v~g~~- 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREG----------------------IFVTGTS- 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCcccc----------------------EEEEeee-
Confidence 444455677888888887521 13445555543 56666666554 2333 3331110
Q ss_pred CCCCCCEEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCC--CCCCcceEEEeEE
Q 037736 232 DGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGG--CKGTSAVNVSEVT 309 (377)
Q Consensus 232 ~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~i~ni~ 309 (377)
....+.+++|+++.+.....|+.+..... + +.+ +++|..+++...+|.+...- +.... .+...+-.|++-.
T Consensus 146 --~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~--~-~~n-~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~N~ 218 (246)
T PF07602_consen 146 --ANPGINGNVISGNSIYFNKTGISISDNAA--P-VEN-KIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRNNG 218 (246)
T ss_pred --cCCcccceEeecceEEecCcCeEEEcccC--C-ccc-eeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEecCc
Confidence 03467788899999998888999884432 2 222 44777777666677655321 11110 0012334566666
Q ss_pred EEeEEEe
Q 037736 310 YSDVQGS 316 (377)
Q Consensus 310 f~ni~~~ 316 (377)
.-+|...
T Consensus 219 ~~Dl~~~ 225 (246)
T PF07602_consen 219 RYDLNNS 225 (246)
T ss_pred ceeeEec
Confidence 6666653
No 85
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=92.47 E-value=7.8 Score=37.64 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=21.5
Q ss_pred eeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEEE
Q 037736 209 SNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIK 258 (377)
Q Consensus 209 ~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~ 258 (377)
.|-.|+|....++.|+.++..+ ..+.++||++++|. ..|+.+.
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~ 353 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIR 353 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEE
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEe
Confidence 4666666666666665554443 24566666666662 3455555
No 86
>PLN02665 pectinesterase family protein
Probab=92.10 E-value=4.6 Score=38.99 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=42.3
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCcee--EEEEecCC
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNG--ARIKTSPG 262 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~g--i~i~~~~~ 262 (377)
.....+.||.|....|.+.... ..-.+++|++.+.-.+-+|. -...|++|++.....+ -.|.....
T Consensus 186 gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~----------g~a~fe~C~i~s~~~~~~g~ITA~~r 253 (366)
T PLN02665 186 GDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS----------GKSLYLNTELHVVGDGGLRVITAQAR 253 (366)
T ss_pred CCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc----------cceeeEccEEEEecCCCcEEEEcCCC
Confidence 3566777777776556555443 24556777766555544443 2355666666543222 22222111
Q ss_pred C-CceEEeEEEEeEEEecc
Q 037736 263 G-SGYARRISFEHITLIAS 280 (377)
Q Consensus 263 ~-~g~i~nI~~~ni~~~~~ 280 (377)
. ...-....|.|+++++.
T Consensus 254 ~~~~~~~GfvF~~C~itg~ 272 (366)
T PLN02665 254 NSEAEDSGFSFVHCKVTGT 272 (366)
T ss_pred CCCCCCceEEEEeeEEecC
Confidence 0 11223456666666654
No 87
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=91.34 E-value=5.7 Score=34.13 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=33.2
Q ss_pred cccEEEEeeEEEe-CC-------ceEEEcCCceeEEEEceeecCCceeEeeccCC---CCCCCCEEEEEEEceEEeCC
Q 037736 185 STQVNILDSSIKS-GD-------DCVAINGGSSNINITGVACGPGHGISVGSLGL---DGADDKVEEVHVRNCNFTGT 251 (377)
Q Consensus 185 s~nv~I~n~~i~~-~d-------D~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~---~~~~~~i~ni~i~n~~~~~~ 251 (377)
.++|+|++..|.. |- .+| +.++..|.+|+|+.|.+..+.+|...-. ....+.-.-.+++|+.+.++
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGI-v~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGI-VTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeE-EeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeee
Confidence 3577777776654 21 233 2334667777777776654333322110 01122233366677766665
No 88
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=89.51 E-value=3.8 Score=42.66 Aligned_cols=112 Identities=9% Similarity=0.133 Sum_probs=77.1
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCC
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGAD 235 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~ 235 (377)
..+++..+|++|.|.........+.+. .+....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 467899999999986443333444443 36889999999999888877665 35689999998876766655
Q ss_pred CCEEEEEEEceEEeCCc----eeEEEEecCC-CCceEEeEEEEeEEEecc
Q 037736 236 DKVEEVHVRNCNFTGTQ----NGARIKTSPG-GSGYARRISFEHITLIAS 280 (377)
Q Consensus 236 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~-~~g~i~nI~~~ni~~~~~ 280 (377)
....|+||++.-.. ..-.|..... ....-..+.|.|++++..
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecC
Confidence 35889999986431 1234443211 123345789999999875
No 89
>PLN02634 probable pectinesterase
Probab=89.01 E-value=8.3 Score=37.08 Aligned_cols=84 Identities=6% Similarity=0.076 Sum_probs=43.7
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCce-eEEEEecCC-
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQN-GARIKTSPG- 262 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~-gi~i~~~~~- 262 (377)
..+..+.+|.|....|.+.... ..-.++||++.+.-.+-+|. -...|+||++..... .-.|.....
T Consensus 181 gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~g~ITA~~R~ 248 (359)
T PLN02634 181 GDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGN----------GRSMYKDCELHSIASRFGSIAAHGRT 248 (359)
T ss_pred CCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCC----------ceEEEeccEEEEecCCCcEEEeCCCC
Confidence 4667777777777666655443 34667777776655555443 245666666654321 112222110
Q ss_pred CCceEEeEEEEeEEEecc
Q 037736 263 GSGYARRISFEHITLIAS 280 (377)
Q Consensus 263 ~~g~i~nI~~~ni~~~~~ 280 (377)
....-....|.|+++++.
T Consensus 249 ~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 249 CPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred CCCCCcEEEEEcCEEcCC
Confidence 112224566777777653
No 90
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=88.99 E-value=7.3 Score=39.33 Aligned_cols=39 Identities=8% Similarity=-0.123 Sum_probs=18.1
Q ss_pred ccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEe
Q 037736 186 TQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISV 226 (377)
Q Consensus 186 ~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~i 226 (377)
.++.+.+|.|....|.+..+++ .-.+++|++.+.-.+-+
T Consensus 298 D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIF 336 (497)
T PLN02698 298 DHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIF 336 (497)
T ss_pred CcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEe
Confidence 4455555555554444444331 23455555544434333
No 91
>PLN02197 pectinesterase
Probab=88.02 E-value=9.7 Score=39.23 Aligned_cols=113 Identities=12% Similarity=0.190 Sum_probs=75.9
Q ss_pred eCeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCC
Q 037736 156 NTCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGA 234 (377)
Q Consensus 156 ~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~ 234 (377)
...+++..+|++|.|...........+. .+....+.+|.|....|.+..+++ .-.+++|++.++-.+-+|.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGK------ 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccc------
Confidence 3567899999999986432233444443 358899999999998888877763 4589999998876666654
Q ss_pred CCCEEEEEEEceEEeCCc--ee--EEEEecCCC---CceEEeEEEEeEEEeccC
Q 037736 235 DDKVEEVHVRNCNFTGTQ--NG--ARIKTSPGG---SGYARRISFEHITLIASK 281 (377)
Q Consensus 235 ~~~i~ni~i~n~~~~~~~--~g--i~i~~~~~~---~g~i~nI~~~ni~~~~~~ 281 (377)
....|+||++.-.. .| -.|.. .++ ...-..+.|.|++++...
T Consensus 433 ----a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 433 ----SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ----eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecCC
Confidence 34888999875321 11 23332 221 123356899999998753
No 92
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=87.43 E-value=6.2 Score=40.20 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=40.4
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|...........+. .+....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|.
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 380 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN-------- 380 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc--------
Confidence 34455555555543221112223322 23566667777766555555444 23466677666555544443
Q ss_pred CEEEEEEEceEEe
Q 037736 237 KVEEVHVRNCNFT 249 (377)
Q Consensus 237 ~i~ni~i~n~~~~ 249 (377)
....|+||++.
T Consensus 381 --a~avf~~C~i~ 391 (539)
T PLN02995 381 --AAAVFQNCIIL 391 (539)
T ss_pred --cceEEeccEEE
Confidence 24556666664
No 93
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.02 E-value=16 Score=31.48 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=8.1
Q ss_pred CEEEEEEEceEEeCC
Q 037736 237 KVEEVHVRNCNFTGT 251 (377)
Q Consensus 237 ~i~ni~i~n~~~~~~ 251 (377)
+..|..|||+.|.+.
T Consensus 62 GF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 62 GFYNTLIENNVFDGV 76 (198)
T ss_pred cccccEEEeeeeccc
Confidence 444555555555554
No 94
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=73.80 E-value=72 Score=32.35 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=81.7
Q ss_pred EEEeecceEEEeeEEeCCCc----eeEEEe-CeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEc
Q 037736 131 YFHNCNNLQVKGITIVNSPK----SHISIN-TCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAIN 205 (377)
Q Consensus 131 ~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 205 (377)
.....+++..++++|+|... ..+-+. .++...+.+|.|... .|-+.... ..-..++|+|...=|-|-
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~-----QDTLy~~~-~rqyy~~C~I~G~vDFIF-- 336 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY-----QDTLYAAA-LRQFYRECDIYGTIDFIF-- 336 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----cchheeCC-CcEEEEeeEEEeccceEe--
Confidence 34467899999999998643 233333 478899999999973 44454443 346889999998655543
Q ss_pred CCceeEEEEceeecCC---ce--eEeeccCCCCCCCCEEEEEEEceEEeCCceeEEE----EecCCC-CceEEeEEEEeE
Q 037736 206 GGSSNINITGVACGPG---HG--ISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARI----KTSPGG-SGYARRISFEHI 275 (377)
Q Consensus 206 s~~~nv~i~n~~~~~~---~g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i----~~~~~~-~g~i~nI~~~ni 275 (377)
|.-...++||.+..- .+ -.|-..+ +.....-..+.|.||++......... +..-|+ =..-..+.|.+.
T Consensus 337 -G~a~avf~~C~i~~~~~~~~~~~~iTAq~-r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s 414 (497)
T PLN02698 337 -GNAAAVFQNCYLFLRRPHGKSYNVILANG-RSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMES 414 (497)
T ss_pred -cccceeecccEEEEecCCCCCceEEEecC-CCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEec
Confidence 234688999998421 11 0111111 11123346799999999875421111 111111 122356677777
Q ss_pred EEecc
Q 037736 276 TLIAS 280 (377)
Q Consensus 276 ~~~~~ 280 (377)
.|.+.
T Consensus 415 ~l~~~ 419 (497)
T PLN02698 415 YIDDA 419 (497)
T ss_pred ccCCc
Confidence 76653
No 95
>PLN02916 pectinesterase family protein
Probab=72.36 E-value=93 Score=31.51 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=57.4
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|...........+. .+....+.+|.|....|.+..+++ .-.+++|++.+.-.+-+|.
T Consensus 276 ~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~-------- 345 (502)
T PLN02916 276 GDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD-------- 345 (502)
T ss_pred CCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC--------
Confidence 34555666666654322222333332 246677777777776666665542 3466777776665555544
Q ss_pred CEEEEEEEceEEeCCc----eeEEEEecCC-CCceEEeEEEEeEEEecc
Q 037736 237 KVEEVHVRNCNFTGTQ----NGARIKTSPG-GSGYARRISFEHITLIAS 280 (377)
Q Consensus 237 ~i~ni~i~n~~~~~~~----~gi~i~~~~~-~~g~i~nI~~~ni~~~~~ 280 (377)
....|+||++.-.. ..-.|..... ....-..+.|.|++++..
T Consensus 346 --a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 346 --AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred --ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 34666777664321 1123332111 112234567777777654
No 96
>PLN02773 pectinesterase
Probab=71.39 E-value=95 Score=29.47 Aligned_cols=114 Identities=10% Similarity=0.132 Sum_probs=78.1
Q ss_pred EeCeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCC
Q 037736 155 INTCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDG 233 (377)
Q Consensus 155 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~ 233 (377)
...++++..+|++|.|...........+. .+..+.+.||.|....|.+..+. ..-.++||++.+.-.+-+|.
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~----- 170 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN----- 170 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-----
Confidence 33578999999999986432222333332 35889999999999888887765 36889999998877777765
Q ss_pred CCCCEEEEEEEceEEeCCceeEEEEecCCC-CceEEeEEEEeEEEeccC
Q 037736 234 ADDKVEEVHVRNCNFTGTQNGARIKTSPGG-SGYARRISFEHITLIASK 281 (377)
Q Consensus 234 ~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-~g~i~nI~~~ni~~~~~~ 281 (377)
-...|++|++.....|. |...... ...-....|.|+++++..
T Consensus 171 -----g~a~Fe~c~i~s~~~g~-ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 -----STALLEHCHIHCKSAGF-ITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -----cEEEEEeeEEEEccCcE-EECCCCCCCCCCceEEEEccEEecCC
Confidence 35899999997654443 3322111 112245789999998754
No 97
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=66.91 E-value=1.5e+02 Score=30.05 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=60.1
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|...........+. .+....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|.
T Consensus 283 g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~-------- 352 (509)
T PLN02488 283 GDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN-------- 352 (509)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc--------
Confidence 44556666666654322222333332 24677777777777666666554 34567777776665555544
Q ss_pred CEEEEEEEceEEeCCc----eeEEEEecCCC-CceEEeEEEEeEEEecc
Q 037736 237 KVEEVHVRNCNFTGTQ----NGARIKTSPGG-SGYARRISFEHITLIAS 280 (377)
Q Consensus 237 ~i~ni~i~n~~~~~~~----~gi~i~~~~~~-~g~i~nI~~~ni~~~~~ 280 (377)
....|+||++.... ..-.|...... ...-..+.|.|++++..
T Consensus 353 --a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 353 --AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred --eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecC
Confidence 35677777775321 11233322111 12234577777777764
No 98
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=63.02 E-value=76 Score=25.24 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=40.5
Q ss_pred EeecceEEEeeEEeCCC---ceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEe-eEEEeCCceEE
Q 037736 133 HNCNNLQVKGITIVNSP---KSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILD-SSIKSGDDCVA 203 (377)
Q Consensus 133 ~~~~nv~i~~~~i~~~~---~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 203 (377)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+-.+. .. .. .+|+++..+.+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 45566667766666653 67777776655545554444 11 12 6778887777777766 44444455543
No 99
>PLN02671 pectinesterase
Probab=62.11 E-value=1.6e+02 Score=28.55 Aligned_cols=39 Identities=3% Similarity=-0.082 Sum_probs=18.2
Q ss_pred ccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEe
Q 037736 186 TQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISV 226 (377)
Q Consensus 186 ~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~i 226 (377)
.++.+.+|.|....|.+-... ..-.++||++.+.-.+-+
T Consensus 186 Dra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIF 224 (359)
T PLN02671 186 DKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIF 224 (359)
T ss_pred ccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEe
Confidence 455555555555444443332 134455555544433333
No 100
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=57.15 E-value=1.5e+02 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=9.0
Q ss_pred EeecceEEEeeEEeCC
Q 037736 133 HNCNNLQVKGITIVNS 148 (377)
Q Consensus 133 ~~~~nv~i~~~~i~~~ 148 (377)
...+++.+++++|+|.
T Consensus 84 v~a~~f~~~nit~~Nt 99 (298)
T PF01095_consen 84 VNADDFTAENITFENT 99 (298)
T ss_dssp E-STT-EEEEEEEEEH
T ss_pred ccccceeeeeeEEecC
Confidence 3456677777777664
No 101
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=55.91 E-value=18 Score=19.16 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=9.3
Q ss_pred ccEEEEeeEEEeCC-ceEEE
Q 037736 186 TQVNILDSSIKSGD-DCVAI 204 (377)
Q Consensus 186 ~nv~I~n~~i~~~d-D~i~i 204 (377)
.+++|++|.+.... +|+.+
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i 21 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYI 21 (26)
T ss_pred CCEEEECCEEEeCCCCcEEE
Confidence 34555556555532 24444
No 102
>PLN02682 pectinesterase family protein
Probab=54.00 E-value=2.2e+02 Score=27.69 Aligned_cols=53 Identities=6% Similarity=0.035 Sum_probs=29.0
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEe
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFT 249 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~ 249 (377)
.+++.+.+|.|....|.+..+. ..-.++||++.+.-.+-+|. -...|++|++.
T Consensus 195 gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~----------g~a~Fe~C~I~ 247 (369)
T PLN02682 195 ADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN----------GLSLYEGCHLH 247 (369)
T ss_pred CCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC----------ceEEEEccEEE
Confidence 3566666666666555554433 24456666665554444433 24556666654
No 103
>PLN02480 Probable pectinesterase
Probab=51.37 E-value=50 Score=31.68 Aligned_cols=112 Identities=9% Similarity=0.021 Sum_probs=75.4
Q ss_pred CeecEEEEEEEEECCCC-----CCCCCeeec-cCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccC
Q 037736 157 TCNGVSVSNIHIDSPED-----SPNTDGIDI-SFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLG 230 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~-----~~~~DGi~~-~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~ 230 (377)
..++++++|++|.+... .....++.+ ..++++.+.||.|....|.+-... ..-.++||++.+.-.+-+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45789999999998621 112345555 346899999999999778776554 46789999998776666654
Q ss_pred CCCCCCCEEEEEEEceEEeCCce-----eEEEEecCCCCceEEeEEEEeEEEecc
Q 037736 231 LDGADDKVEEVHVRNCNFTGTQN-----GARIKTSPGGSGYARRISFEHITLIAS 280 (377)
Q Consensus 231 ~~~~~~~i~ni~i~n~~~~~~~~-----gi~i~~~~~~~g~i~nI~~~ni~~~~~ 280 (377)
-...|++|++..... .-.|.........-....|.|+++++.
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 368899999865321 122433221122334678999999874
No 104
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=49.74 E-value=58 Score=30.80 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=48.4
Q ss_pred eecEEEEEEEEECCCC-C---CCCCeeecc-CcccEEEEeeEEEeCCceEEEcCC----------ceeEEEEceeecCCc
Q 037736 158 CNGVSVSNIHIDSPED-S---PNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGG----------SSNINITGVACGPGH 222 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~-~---~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~----------~~nv~i~n~~~~~~~ 222 (377)
..++.++|+++.+... + .+.-.+.+. .+..+.++||.+....|.+-++.. .-.-+++||++.+--
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 3566666666665321 1 122223332 357888999999887777766653 113457788886655
Q ss_pred eeEeeccCCCCCCCCEEEEEEEceEEe
Q 037736 223 GISVGSLGLDGADDKVEEVHVRNCNFT 249 (377)
Q Consensus 223 gi~igs~~~~~~~~~i~ni~i~n~~~~ 249 (377)
.+-.|+- -.+|.+|.+.
T Consensus 268 DfIfGsg----------taVFd~c~i~ 284 (405)
T COG4677 268 DFIFGSG----------TAVFDNCEIQ 284 (405)
T ss_pred eEEeccc----------eEEeccceEE
Confidence 5666652 3566677664
No 105
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=49.60 E-value=2.2e+02 Score=29.37 Aligned_cols=39 Identities=3% Similarity=-0.124 Sum_probs=17.5
Q ss_pred ccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEe
Q 037736 186 TQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISV 226 (377)
Q Consensus 186 ~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~i 226 (377)
....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+
T Consensus 373 D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 373 DLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIF 411 (565)
T ss_pred CcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceee
Confidence 445555555555444444333 123355555544434333
No 106
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=45.46 E-value=3.3e+02 Score=28.09 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=48.1
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecC---------C-ce-eE
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGP---------G-HG-IS 225 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~---------~-~g-i~ 225 (377)
.++.+.+.+|+|... .|-+.... ..-..++|+|...=|-|- |.-...++||.+.. + .+ +.
T Consensus 356 ~~D~~~f~~c~~~G~-----QDTLy~~~-~rq~y~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~~~~~iT 426 (553)
T PLN02708 356 DSDLSVIENCEFLGN-----QDTLYAHS-LRQFYKSCRIQGNVDFIF---GNSAAVFQDCAILIAPRQLKPEKGENNAVT 426 (553)
T ss_pred cCCcEEEEeeeeeec-----cccceeCC-CceEEEeeEEeecCCEEe---cCceEEEEccEEEEeccccCCCCCCceEEE
Confidence 456777888888863 34444433 345778888887545442 23467788888741 0 11 22
Q ss_pred eeccCCCCCCCCEEEEEEEceEEeCC
Q 037736 226 VGSLGLDGADDKVEEVHVRNCNFTGT 251 (377)
Q Consensus 226 igs~~~~~~~~~i~ni~i~n~~~~~~ 251 (377)
- .+ +.....-..+.|.||++...
T Consensus 427 A--~~-r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 427 A--HG-RTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred e--CC-CCCCCCCceEEEEccEEecC
Confidence 1 11 11123345788999998764
No 107
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=42.23 E-value=3.1e+02 Score=28.60 Aligned_cols=113 Identities=8% Similarity=0.083 Sum_probs=76.7
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCC
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGAD 235 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~ 235 (377)
..+++..+|++|.|...........+. .+....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 568899999999986432223334443 35899999999999888877665 35789999998876766655
Q ss_pred CCEEEEEEEceEEeCCc----eeEEEEecCC-CCceEEeEEEEeEEEeccC
Q 037736 236 DKVEEVHVRNCNFTGTQ----NGARIKTSPG-GSGYARRISFEHITLIASK 281 (377)
Q Consensus 236 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~-~~g~i~nI~~~ni~~~~~~ 281 (377)
....|+||++.-.. ..-.|..... ....-..+.|.|++++...
T Consensus 441 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ---AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ---eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 46889999885421 1123433211 1223457899999998753
No 108
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=40.95 E-value=1.1e+02 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=16.5
Q ss_pred EEEeeeeceEEEeccEEeCCCcccccccEEEEeecceEEE
Q 037736 102 LSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVK 141 (377)
Q Consensus 102 i~~~~~~ni~I~G~g~idg~g~~~~~~~i~~~~~~nv~i~ 141 (377)
+.+.+++|-+|.- |.+.| .+.+.+|+|.+|.
T Consensus 23 v~i~~~~~c~i~~-g~v~g--------sv~i~~c~n~~i~ 53 (120)
T PF07986_consen 23 VHIDNCKNCTIVL-GPVSG--------SVFIENCENCTII 53 (120)
T ss_dssp EEEES-BS-EEEE-EEECC--------EEEEES-ECEEEE
T ss_pred EEEeCCCCCEEEE-eecCc--------eEEEecCCceEEE
Confidence 4556667666654 44444 5666777666653
No 109
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=40.52 E-value=3.3e+02 Score=28.33 Aligned_cols=79 Identities=6% Similarity=0.127 Sum_probs=40.0
Q ss_pred ecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCC
Q 037736 159 NGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDK 237 (377)
Q Consensus 159 ~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~ 237 (377)
+++..+|++|.|...........+. .+....+.+|.|....|.+..+++ .-.+++|++.++-.+-+|.
T Consensus 362 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~--------- 430 (587)
T PLN02313 362 ERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN--------- 430 (587)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc---------
Confidence 4555555555543221122222222 235666666666665555555542 3356666666554444433
Q ss_pred EEEEEEEceEEe
Q 037736 238 VEEVHVRNCNFT 249 (377)
Q Consensus 238 i~ni~i~n~~~~ 249 (377)
....|+||++.
T Consensus 431 -a~avfq~c~i~ 441 (587)
T PLN02313 431 -AAAVLQDCDIN 441 (587)
T ss_pred -eeEEEEccEEE
Confidence 24566666664
No 110
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=40.36 E-value=3.8e+02 Score=26.61 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEE
Q 037736 35 AFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVS 82 (377)
Q Consensus 35 aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~ 82 (377)
-|.+|+..+.. ......+++-+| +|....+.+ .| +|.|.++
T Consensus 34 ~iEea~~~l~e-~~~e~LIFlH~G-~~e~~~i~I----~s-dvqiiGA 74 (625)
T KOG1777|consen 34 HIEEALRFLDE-NDEEKLIFLHEG-THETETIRI----TS-DVQIIGA 74 (625)
T ss_pred hHHHHhhhccc-ccccceEEEEec-cccceEEEE----cC-CeeEecc
Confidence 34444443333 334778999999 898777888 56 7777654
No 111
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=39.93 E-value=1.9e+02 Score=22.85 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=8.4
Q ss_pred CCeeeccCcccEEEEeeEE
Q 037736 177 TDGIDISFSTQVNILDSSI 195 (377)
Q Consensus 177 ~DGi~~~~s~nv~I~n~~i 195 (377)
..|+.+..+.+..+.++.+
T Consensus 93 ~~Gi~~~~~~~~~~~~N~i 111 (146)
T smart00722 93 GAGIVVTAGSEGLFIGNRI 111 (146)
T ss_pred eEEEEEECCccceEecCeE
Confidence 4455555444433333333
No 112
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=39.72 E-value=3e+02 Score=28.29 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=41.7
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|...........+. .+..+.+.+|.|....|.+..++ ..-.+++|++.++-.+-+|.
T Consensus 316 ~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 385 (541)
T PLN02416 316 GEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN-------- 385 (541)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc--------
Confidence 34555555555543222122222221 23566777777776556555444 23466777766655554443
Q ss_pred CEEEEEEEceEEeC
Q 037736 237 KVEEVHVRNCNFTG 250 (377)
Q Consensus 237 ~i~ni~i~n~~~~~ 250 (377)
-...|+||++.-
T Consensus 386 --a~avfq~c~i~~ 397 (541)
T PLN02416 386 --AAVVFQACNIVS 397 (541)
T ss_pred --ceEEEeccEEEE
Confidence 245666666643
No 113
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=38.60 E-value=3.2e+02 Score=28.16 Aligned_cols=41 Identities=12% Similarity=-0.035 Sum_probs=21.7
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEee
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVG 227 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~ig 227 (377)
+....+.+|.|....|.+..+++ .-.+++|++.+.-.+-+|
T Consensus 350 ~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 350 ADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFG 390 (548)
T ss_pred CCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceecc
Confidence 35566666666665555554442 235666666554444443
No 114
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=36.78 E-value=4.2e+02 Score=27.17 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=28.5
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEe
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFT 249 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~ 249 (377)
+....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|. ....|+||++.
T Consensus 340 gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----------a~avFq~C~I~ 392 (529)
T PLN02170 340 SDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN----------SAVVFQSCNIA 392 (529)
T ss_pred CCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc----------ceEEEeccEEE
Confidence 3556666666666555555444 23455666665554444433 23556666554
No 115
>PRK09752 adhesin; Provisional
Probab=36.77 E-value=6.8e+02 Score=28.41 Aligned_cols=38 Identities=5% Similarity=0.120 Sum_probs=16.4
Q ss_pred cEEEEEEEEECCCCCCCCCeeeccCcc-----cEEEEeeEEEe
Q 037736 160 GVSVSNIHIDSPEDSPNTDGIDISFST-----QVNILDSSIKS 197 (377)
Q Consensus 160 nv~I~~~~i~~~~~~~~~DGi~~~~s~-----nv~I~n~~i~~ 197 (377)
.++|.++.|.+.......-.|...+.. .+.|.|+.|.+
T Consensus 122 ~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~n 164 (1250)
T PRK09752 122 TLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRN 164 (1250)
T ss_pred eeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEc
Confidence 355555555543221223334333211 25555555554
No 116
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=33.90 E-value=69 Score=31.53 Aligned_cols=16 Identities=6% Similarity=-0.068 Sum_probs=9.2
Q ss_pred CCCceecEEEEeEEEE
Q 037736 328 SEEGCFGIKMEQVSIT 343 (377)
Q Consensus 328 ~~~~i~~i~~~nv~i~ 343 (377)
..+.++=|+++.+-+.
T Consensus 585 ~GH~Vefir~Drffcd 600 (625)
T KOG1777|consen 585 EGHDVEFIRHDRFFCD 600 (625)
T ss_pred CCCceEEEeeceEEEe
Confidence 3455666666665554
No 117
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=33.74 E-value=3.4e+02 Score=26.87 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=24.6
Q ss_pred EEEEEEceEEeCCceeEEEEecCCC----CceEEeEEEEeEEEec
Q 037736 239 EEVHVRNCNFTGTQNGARIKTSPGG----SGYARRISFEHITLIA 279 (377)
Q Consensus 239 ~ni~i~n~~~~~~~~gi~i~~~~~~----~g~i~nI~~~ni~~~~ 279 (377)
..+.|.+|.|.+...-+........ ......-.|+|+.+++
T Consensus 238 Dra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 238 DKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred CcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 4688999999887666766321110 1122345667777665
No 118
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=33.46 E-value=4.2e+02 Score=27.43 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=76.7
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCC
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGAD 235 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~ 235 (377)
..+++..+|++|.|...........+. .+....+.+|.|....|.+..++ ..-.+++|++.++-.+-+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc-------
Confidence 458999999999986443333444443 35889999999999888888776 35689999998877766655
Q ss_pred CCEEEEEEEceEEeCCc----eeEEEEecC-CCCceEEeEEEEeEEEecc
Q 037736 236 DKVEEVHVRNCNFTGTQ----NGARIKTSP-GGSGYARRISFEHITLIAS 280 (377)
Q Consensus 236 ~~i~ni~i~n~~~~~~~----~gi~i~~~~-~~~g~i~nI~~~ni~~~~~ 280 (377)
-.+.|+||++.... ..-.|.... .....-..+.|.|++++..
T Consensus 409 ---a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 ---AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ---ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 36889999885421 112333221 1122335788999999864
No 119
>PLN02314 pectinesterase
Probab=33.01 E-value=4.2e+02 Score=27.53 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=38.8
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|...........+. .+....+.+|.|....|.+..+++ .-.+++|++.++-.+-+|.
T Consensus 364 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~-------- 433 (586)
T PLN02314 364 GKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN-------- 433 (586)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC--------
Confidence 34455555555543221112222221 235566666666665555555442 3456666665554444443
Q ss_pred CEEEEEEEceEEe
Q 037736 237 KVEEVHVRNCNFT 249 (377)
Q Consensus 237 ~i~ni~i~n~~~~ 249 (377)
....|+||++.
T Consensus 434 --a~avf~~c~i~ 444 (586)
T PLN02314 434 --AAVVFQNCNIQ 444 (586)
T ss_pred --ceeeeeccEEE
Confidence 24556666653
No 120
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=32.98 E-value=5.5e+02 Score=26.26 Aligned_cols=81 Identities=9% Similarity=0.104 Sum_probs=42.2
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|.........+.+. .+....+.+|.|....|.+..+++ .-.+++|++.+.-.+-+|.
T Consensus 292 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~-------- 361 (520)
T PLN02201 292 GRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD-------- 361 (520)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC--------
Confidence 34555555555554321122223322 235666777777776666655542 3456667776655555543
Q ss_pred CEEEEEEEceEEeC
Q 037736 237 KVEEVHVRNCNFTG 250 (377)
Q Consensus 237 ~i~ni~i~n~~~~~ 250 (377)
....|+||++..
T Consensus 362 --a~avf~~C~i~~ 373 (520)
T PLN02201 362 --ATAVFQNCQILA 373 (520)
T ss_pred --ceEEEEccEEEE
Confidence 246666666643
No 121
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=32.88 E-value=5e+02 Score=25.74 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=13.4
Q ss_pred EEeEEEEeEEEecc-CccEEEEee
Q 037736 267 ARRISFEHITLIAS-KNPIIIDQH 289 (377)
Q Consensus 267 i~nI~~~ni~~~~~-~~~i~i~~~ 289 (377)
--|..|+|+..-.+ .-++.+..+
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aD 286 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGAD 286 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS
T ss_pred eeeEEEeccceEEEeecceeccCC
Confidence 45788888877654 446666654
No 122
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=32.26 E-value=3.9e+02 Score=27.42 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=55.5
Q ss_pred CeecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCC
Q 037736 157 TCNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGAD 235 (377)
Q Consensus 157 ~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~ 235 (377)
..+++..+|++|.|...........+. .+.++.+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|.
T Consensus 317 ~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~------- 387 (537)
T PLN02506 317 SGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN------- 387 (537)
T ss_pred EcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC-------
Confidence 345555555555554221122223322 24667777777777666665554 23467777776655555544
Q ss_pred CCEEEEEEEceEEeCCc----eeEEEEecCC-CCceEEeEEEEeEEEec
Q 037736 236 DKVEEVHVRNCNFTGTQ----NGARIKTSPG-GSGYARRISFEHITLIA 279 (377)
Q Consensus 236 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~-~~g~i~nI~~~ni~~~~ 279 (377)
....|+||++.-.. ..-.|..... ....-..+.|.|++++.
T Consensus 388 ---a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 388 ---GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred ---ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEcc
Confidence 24666677664321 1122322110 11122456677777665
No 123
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=31.29 E-value=5.2e+02 Score=26.87 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=27.7
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEe
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFT 249 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~ 249 (377)
+....+.+|.|....|.+..++ ..-.+++|++.+.-.+-+|. ....|+||++.
T Consensus 387 ~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~ 439 (587)
T PLN02484 387 ADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN----------AAVVLQNCSIY 439 (587)
T ss_pred CCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc----------ceeEEeccEEE
Confidence 3556666666666555554443 23456666665544444433 24555555553
No 124
>PRK09752 adhesin; Provisional
Probab=30.73 E-value=8.4e+02 Score=27.71 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=30.7
Q ss_pred cEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeC---C--ceEEEcCC----ceeEEEEceeecCC
Q 037736 160 GVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSG---D--DCVAINGG----SSNINITGVACGPG 221 (377)
Q Consensus 160 nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~---d--D~i~i~s~----~~nv~i~n~~~~~~ 221 (377)
+..+.+.++.... ...-.|.-.....+.|.+|.|.+. . .+|..... .-.+.|.|+.|.+.
T Consensus 97 ~t~F~nNtasG~~--~sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN 165 (1250)
T PRK09752 97 MTLFANNTVSGEY--NNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNN 165 (1250)
T ss_pred ceEeecceecCCc--CCccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEcc
Confidence 4444555554311 123334333334578888888762 1 23333221 12477888888653
No 125
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=30.68 E-value=1.2e+02 Score=27.67 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCcEEEecCCcEEEeee------eeeeCCCCCcceEEEEEEEEEcCCCCCcCCCCceecEEEeeeec
Q 037736 36 FAKAWTDFCSATGDSATLEIPANKAFLLKS------TTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQG 109 (377)
Q Consensus 36 iq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~------l~l~~~~~s~~v~l~~~G~i~~~~~~~~~~~~~~~~i~~~~~~n 109 (377)
|+..+++-.+ . |.| +|.++. +.+....+| -++=.+.|+|.++.+ .++
T Consensus 143 F~~Lv~am~~-n--------p~G-ty~LgadldA~~V~l~~~~~s-Yv~~~FtG~L~G~~~----------------Gk~ 195 (250)
T PF05342_consen 143 FKELVQAMNA-N--------PSG-TYKLGADLDASEVELPPGGKS-YVTGTFTGTLDGSND----------------GKG 195 (250)
T ss_pred HHHHHHHHhh-C--------CCc-eEEECCccchhhcccCCCCcc-cccCceEEEEeccCC----------------CCc
Q ss_pred eEEEec--cEEeCCCcccccccEEEEeecceEEEeeEEeCCCceeEEEeCe-ecEEEEEEEEEC
Q 037736 110 LSIDGS--GTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTC-NGVSVSNIHIDS 170 (377)
Q Consensus 110 i~I~G~--g~idg~g~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~-~nv~I~~~~i~~ 170 (377)
-+|.+. ..++ .+.-...+|+.+.++.|..+-.-+...... .+-+|+|+++..
T Consensus 196 yaI~nL~~PLF~---------~l~gatI~nL~l~nv~I~~~d~va~LA~~ak~~t~IenV~v~G 250 (250)
T PF05342_consen 196 YAIYNLKKPLFD---------TLNGATIKNLNLKNVNINGPDDVAALANEAKNNTTIENVKVTG 250 (250)
T ss_pred eEEeccCchhhh---------cccCCEEEcceeEEeeeeccccHHHHHHhhccCCEEEEEEecC
No 126
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=29.87 E-value=6e+02 Score=26.34 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=37.6
Q ss_pred ecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCC
Q 037736 159 NGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDK 237 (377)
Q Consensus 159 ~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~ 237 (377)
+++..+|++|.|...........+. .+....+.+|.|....|.+..++ ..-.+++|++.++-.+-+|.
T Consensus 347 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~--------- 415 (572)
T PLN02990 347 DHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD--------- 415 (572)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC---------
Confidence 4445555555543221122222222 23556666666666555554443 23455666665554444433
Q ss_pred EEEEEEEceEEe
Q 037736 238 VEEVHVRNCNFT 249 (377)
Q Consensus 238 i~ni~i~n~~~~ 249 (377)
....|+||++.
T Consensus 416 -a~avf~~C~i~ 426 (572)
T PLN02990 416 -AKVVLQNCNIV 426 (572)
T ss_pred -ceEEEEccEEE
Confidence 23555666553
No 127
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=29.80 E-value=5.7e+02 Score=26.20 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=42.2
Q ss_pred eecEEEEEEEEECCCCCCCCCeeecc-CcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCC
Q 037736 158 CNGVSVSNIHIDSPEDSPNTDGIDIS-FSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADD 236 (377)
Q Consensus 158 ~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~ 236 (377)
.+++..+|++|.|.........+.+. .+..+.+.+|.|....|.+..+++ .-.+++|++.+.-.+-+|.
T Consensus 304 a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~-------- 373 (530)
T PLN02933 304 GKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN-------- 373 (530)
T ss_pred CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC--------
Confidence 34555555555553221122233332 246667777777776666555542 3467777776655555543
Q ss_pred CEEEEEEEceEEe
Q 037736 237 KVEEVHVRNCNFT 249 (377)
Q Consensus 237 ~i~ni~i~n~~~~ 249 (377)
....|+||++.
T Consensus 374 --a~avFq~C~i~ 384 (530)
T PLN02933 374 --AAVVFQNCSLY 384 (530)
T ss_pred --ceEEEeccEEE
Confidence 23566666664
No 128
>PLN02432 putative pectinesterase
Probab=24.99 E-value=4.1e+02 Score=24.94 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=44.6
Q ss_pred cccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEEceEEeCCc--eeEEEEecCC
Q 037736 185 STQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQ--NGARIKTSPG 262 (377)
Q Consensus 185 s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~--~gi~i~~~~~ 262 (377)
...+.+.+|.|....|.+-.+. ..-.++||++.+.-.+-+|. -...|++|++.... .| .|.....
T Consensus 120 gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~----------g~a~Fe~c~i~s~~~~~g-~itA~~r 186 (293)
T PLN02432 120 GDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN----------AASLFEKCHLHSLSPNNG-AITAQQR 186 (293)
T ss_pred CCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC----------ceEEEEeeEEEEecCCCC-eEEecCC
Confidence 4667777777777666665443 24567777776655555544 24666777664321 12 2322111
Q ss_pred -CCceEEeEEEEeEEEec
Q 037736 263 -GSGYARRISFEHITLIA 279 (377)
Q Consensus 263 -~~g~i~nI~~~ni~~~~ 279 (377)
....-....|.|+++++
T Consensus 187 ~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 187 TSASENTGFTFLGCKLTG 204 (293)
T ss_pred CCCCCCceEEEEeeEEcc
Confidence 11222356777777764
No 129
>PLN02497 probable pectinesterase
Probab=24.90 E-value=6.2e+02 Score=24.21 Aligned_cols=40 Identities=5% Similarity=-0.006 Sum_probs=20.9
Q ss_pred ccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEee
Q 037736 186 TQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVG 227 (377)
Q Consensus 186 ~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~ig 227 (377)
++..+.||.|....|.+-... ..-.+++|++.+.-.+-+|
T Consensus 150 Dr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 150 DKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred CcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 556666666666555544332 2345666666554444443
No 130
>PLN02176 putative pectinesterase
Probab=22.94 E-value=6.8e+02 Score=24.02 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=18.1
Q ss_pred ccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEe
Q 037736 186 TQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISV 226 (377)
Q Consensus 186 ~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~i 226 (377)
+.+.+.+|.|....|.+.... ..-.+++|++.+.-.+-+
T Consensus 156 Dr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIF 194 (340)
T PLN02176 156 DKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIF 194 (340)
T ss_pred ccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEe
Confidence 455555555555444443332 234455555544433333
No 131
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=20.49 E-value=1.1e+02 Score=22.95 Aligned_cols=18 Identities=11% Similarity=0.464 Sum_probs=11.7
Q ss_pred CCcEEEecCCcEEEeeee
Q 037736 49 DSATLEIPANKAFLLKST 66 (377)
Q Consensus 49 ~g~~V~iP~G~~Y~~~~l 66 (377)
.|+..++|+|+.|-+..+
T Consensus 57 ~G~~F~VP~gN~Y~i~N~ 74 (85)
T PF11699_consen 57 KGGSFQVPRGNYYSIKNI 74 (85)
T ss_dssp TT-EEEE-TT-EEEEEE-
T ss_pred CCCEEEECCCCEEEEEEC
Confidence 488999999998877653
Done!