BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037740
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
VA++G GISGLA+A L KAG+ V + E D +GG T TIDG L++G
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
+VAVIG G+SGLA+A+ L G++V ++E E GG ++++ DG+ D G +
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTXTESEG 74
Query: 62 PNTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGT------------RNGFSSLFAQKKN 109
T DSLG+ K F +S +K GT ++ F S ++ +
Sbjct: 75 DVTF-LIDSLGLREKQ---QFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQX 130
Query: 110 LLNPYFWQ 117
LL P W+
Sbjct: 131 LLEPILWK 138
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V ++G G SGL +A L KAG+ V + E D +GG T TIDG L++G SP
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIG----GQWVSP 65
Query: 63 NT---MEFFDSLGVDMKS 77
+ ME D LG+ M S
Sbjct: 66 DQTVLMELLDELGLKMYS 83
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
VA++G G SGLA+A L KAG+ V + E D +GG T TIDG L++G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
VA++G G SGLA+A L KAG+ V + E D +GG T TIDG L++G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
VA++G G SGLA+A L KAG+ V + E D +GG T TIDG L++G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG 57
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
V VIGGGISGL++A +L + GV V++ E D +GG TI + VD +D+G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 55
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
V VIGGGISGL++A +L + GV V++ E D +GG TI + VD +D+G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 55
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
V VIGGGISGL++A +L + GV V++ E D +GG TI + VD +D+G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVG 66
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
M VAV+GGGISGLA A L G D VL E LGG T + G ++ G
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQG 68
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
+V ++G G+SGL++A+VLA AG V + E + GG KT
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKT 87
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE-DSLGGHAKTITID----GVDLDLGFTLF 56
++AV+GG ISGL +A +L AGVDV +YE+ L G I + L+ G L
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD 66
Query: 57 NHATSPNTMEFFDSL 71
+ + ++ME+ D+L
Sbjct: 67 SISVPSSSMEYVDAL 81
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
V VIGGGISGLA+A +L++ ++V++ E D +GG T+ + V +D+G
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVG 74
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 330
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 208
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 208
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 160
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V +IG G+SGLA+A L G+DV L E D +GG T DLG
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLG 159
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSPNT 64
VIG G GLA A L AG+ V+L E+ D GG A G D G T+ T P+
Sbjct: 6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVI---TDPSA 62
Query: 65 ME 66
+E
Sbjct: 63 IE 64
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD 48
V V+G G+SGL++A+VL+ AG V + E + GG +T D D
Sbjct: 35 HVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKED 81
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
V V+G G+SGL++A+VLA AG V + E + GG +T
Sbjct: 35 HVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRT 74
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V V+G G+SG+++A L++AG+ D+++ E D +GG G++++LG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITIDGVDLDLG 52
+V V+G G+SG+++A L++AG+ D+++ E D +GG G++++LG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELG 57
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT 54
V VIGGG GL + L AG +L E D +GG + + IDG ++G T
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGT 93
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT 54
V VIGGG GL + L AG +L E D +GG + + IDG ++G T
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGT 93
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFT 54
V VIGGG GL + L AG +L E D +GG + + IDG ++G T
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGT 93
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA---KTITIDGVDLDLGFTLFNHATS 61
V+GGG SGL +A L AG V+L E + LGG A ++ + G+ +++G +
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHH 65
Query: 62 PNTMEFFDSLGV 73
P D G+
Sbjct: 66 PRLAAELDRYGI 77
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA---KTITIDGVDLDLGFTLFNHATS 61
V+GGG SGL +A L AG V+L E + LGG A ++ + G+ +++G +
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHH 65
Query: 62 PNTMEFFDSLGV 73
P D G+
Sbjct: 66 PRLAAELDRYGI 77
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
V ++G G++GL++A+VLA AG V + E + GG +T
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRT 74
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 2 QVAVIGGGISGLASAFVLAKA------GVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
V +IGGGI+GLA+AF + K +++ L E +GG +T+ DG ++ G
Sbjct: 7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERG 63
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHA 59
+V +IG GI+GL +A L + G+ D ++ E D +GG +T+T G D+G + ++H
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS-WHHD 68
Query: 60 TSPNTM 65
T N +
Sbjct: 69 TLTNPL 74
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHA 59
+V +IG GI+GL +A L + G+ D ++ E D +GG +T+T G D+G + ++H
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS-WHHD 68
Query: 60 TSPNTM 65
T N +
Sbjct: 69 TLTNPL 74
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHA 59
+V +IG GI+GL +A L + G+ D ++ E D +GG +T+T G D+G + ++H
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS-WHHD 68
Query: 60 TSPNTM 65
T N +
Sbjct: 69 TLTNPL 74
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTIT-IDGVDLDLGFTLFNHA 59
+V +IG GI+GL +A L + G+ D ++ E D +GG +T+T G D+G + ++H
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS-WHHD 68
Query: 60 TSPNTM 65
T N +
Sbjct: 69 TLTNPL 74
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At
2.06 A Resolution
Length = 475
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 2 QVAVIGGGISGLASAFVLAKA--GVDVVLYEKEDSLGGHAKTITIDGVDLDLG 52
++ ++GGGI+GLA+A+ +A +++ L E + LGG T DG ++ G
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERG 58
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 3 VAVIGGGISGLASAFVLAKAGV--DVVLYEKEDSLGGHAKTI 42
V V+GGGISGLA+++ L++A VVL E + LGG +++
Sbjct: 5 VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSV 46
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLG--FTLFNHA 59
+ VIG G+ GL SA L+KAG +V ++E+ GG ++ G L G L N
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHXLPNGP 61
Query: 60 TSPNT---MEFFDSLGVDMKSSDMSFSVSLDKG-----QGFEWGTRNGFSSLFAQK 107
P E S+ + ++S + V L KG +GF+ + N F SL + K
Sbjct: 62 GGPLACFLKEVEASVNI-VRSEXTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYK 116
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTIT-IDGVDLDLG 52
+V +IG GI+GL +A L + G+ D ++ E D +GG +T+T G D+G
Sbjct: 10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
VA+IGGG GL A +L + G+DV +YE+++
Sbjct: 9 VAIIGGGPVGLTXAKLLQQNGIDVSVYERDN 39
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
VA+IGGG GL A +L + G+DV +YE+++
Sbjct: 9 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 39
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
VA+IGGG GL A +L + G+DV +YE+++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
VA+IGGG GL A +L + G+DV +YE+++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
VA+IGGG GL A +L + G+DV +YE+++
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYE--KEDSLGGHAKTITIDGV 47
M+ VIG GI GL++A L ++G+D +YE KE G A ++ +GV
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGV 72
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKT 41
V V+GGG +GL SAF L KAG V + E GG T
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWT 52
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKED 33
VA+IGGG GL A +L + G+DV +YE+++
Sbjct: 30 VAIIGGGPVGLTXAKLLQQNGIDVSVYERDN 60
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
QVA+IG G SGL +L KAG+D V+ E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
V VIGGG SGL++ + L ++G+ V+ + E S GG
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
QVA+IG G SGL +L KAG+D V+ E+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
QVA+IG G SGL +L KAG+D V+ E+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
+V V+G G SGL +A L G DVVL E LGG
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG 428
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad And Uric Acid
Length = 407
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYE--KEDSLGGHAKTITIDGV 47
VIG GI GL++A L ++G+D +YE KE G A ++ +GV
Sbjct: 28 VIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGV 72
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLY 29
Q VIGG SG +A+ LAK G D+ LY
Sbjct: 168 QYVVIGGNESGFDAAYQLAKNGSDIALY 195
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B)
In Complex With Rosiglitazone
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|4AT0|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1
pdb|4AT2|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1 In Complex
With 4-Androstene-3,17- Dione
Length = 510
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
V V G GI+G+A++ A+AG DV++ E+ GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In
Complex With Methylene Blue And Bearing The Double
Mutation I199a- Y326a
Length = 519
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 56
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 13 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 56
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of
Tyr435 Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 10 ISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD-LDLG 52
ISG+A+A +L +G++VV+ E D +GG T+ V +DLG
Sbjct: 14 ISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE-DSLGGHAKT 41
++ ++G GI+GL + +L +AG DV + E + +GG KT
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 32.3 bits (72), Expect = 0.079, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAK 40
+ V V+G G+ GL++A LA+ GV V++ E+ L + +
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPR 45
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 32.0 bits (71), Expect = 0.091, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK 31
+VA+IGGG +G + L K G DV +YE+
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYER 54
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
Length = 545
Score = 32.0 bits (71), Expect = 0.094, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
+ VIG G++G+ AF++ +AG+ V+ E + +GG
Sbjct: 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 25/87 (28%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG--------------------HAKTI 42
+AV+G G +GLA A A G V L++ +GG + + I
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMI 435
Query: 43 TIDGVDLDLGFTLFNHATSPNTMEFFD 69
+ GV L L NH + + ++ FD
Sbjct: 436 EVTGVTLKL-----NHTVTADQLQAFD 457
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYE 30
VIGGG GL +A VL K GV+V L E
Sbjct: 157 VIGGGYIGLEAAAVLTKFGVNVTLLE 182
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
V GGG +GL +A L + G DV L+EK L
Sbjct: 52 VAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 82
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
V GGG +GL +A L + G DV L+EK L
Sbjct: 52 VAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 82
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V VIG G G +A A+ G V EK ++LGG + L + + H
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG 68
Query: 63 NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKK 108
F S G++M ++ +++ G + LF Q K
Sbjct: 69 TD---FASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNK 111
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
+ V GGG +GL +A L + G DV L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V VIG G G +A A+ G V EK ++LGG + L + + H
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG 68
Query: 63 NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKK 108
F S G++M ++ +++ G + LF Q K
Sbjct: 69 KD---FASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNK 111
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
+ V GGG +GL +A L + G DV L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
+ V GGG +GL +A L + G DV L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
+ V GGG +GL +A L + G DV L+EK L
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A
Resolution
Length = 499
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V V+G G +GL A L GVDV++ E+ G ++ LGFT
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR---------GLGFT-------A 58
Query: 63 NTMEFFDSLGV 73
TME FD G+
Sbjct: 59 RTMEVFDQRGI 69
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 31.2 bits (69), Expect = 0.18, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V VIG G G +A A+ G V EK ++LGG + L + + H
Sbjct: 30 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG 89
Query: 63 NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFEWGTRNGFSSLFAQKK 108
F S G++M ++ +++ G + LF Q K
Sbjct: 90 KD---FASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNK 132
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH--------------------AKTI 42
V VIGGG SGL +A A+ G +V+L +K + LG K I
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 88
Query: 43 TIDGVDLDLGFTLFNHATSPNTMEFFDSLGVDMKSSD 79
+G L F++FN+ + + FF++LGV +K D
Sbjct: 89 PGNGRFLYSAFSIFNNE---DIITFFENLGVKLKEED 122
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDL 49
++G G+ G A L K V++ EK + +GG+A T +G+ +
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQI 50
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+GGG SGL++A LA+AG+ V++
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLV 29
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFN 57
+ +A+IG GI+GL++A L AG V L++K GG + D LD G F
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRXSSKRSDAGALDXGAQYFT 59
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
+ +IG GI+GL++ L +AG V L K + G + I GV +G +
Sbjct: 2 IYIIGSGIAGLSAGVALRRAGKKVTLISKR--IDGGSTPIAKGGVAASVGSDDSPELHAQ 59
Query: 63 NTMEFFDSLGVDMKSSDMSFSVSLDKGQGFE-WG 95
+T+ D L D+K+ + S + + + FE WG
Sbjct: 60 DTIRVGDGL-CDVKTVNYVTSEAKNVIETFESWG 92
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 QVAVIGGGISGL--ASAFVLAKAGVDVVLYEKEDSLGG 37
++A+IG G SGL A A + KA V L+E+ S GG
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 47
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42
V ++G G SG +A VL ++G V L + + +GGH +
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV 431
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 2 QVAVIGGGISGL--ASAFVLAKAGVDVVLYEKEDSLGG 37
++A+IG G SGL A A + KA V L+E+ S GG
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTI 42
V ++G G SG +A VL ++G V L + + +GGH +
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV 431
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
VIG G G +A A+ G+ V + EKE +LGG
Sbjct: 6 VIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG 38
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL 35
++ V+GGG+ GL V + G +V++ E D +
Sbjct: 169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI 202
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 2 QVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKT-ITIDGVDLDL-GFTLFNH 58
++ +IG G +GL +A L + G + LYE D+ GG +++ + +G DL G +F+H
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSH 70
Query: 59 ATSPNTMEFFDSL 71
++FD +
Sbjct: 71 ------YQYFDDV 77
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSLGGHAKTITID---GVDLDLGFTLF 56
+ VA+IGGG +GL++ + G+ +VV +EK G + I+ GV F
Sbjct: 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVXFEKGXPGGQITSSSEIENYPGVAQVXDGISF 64
Query: 57 NHATSPNTMEF---FDSLGVD--MKSSDMSFSVSLDKGQ 90
S F + +GV+ +K+SD SF++ L+ G+
Sbjct: 65 XAPWSEQCXRFGLKHEXVGVEQILKNSDGSFTIKLEGGK 103
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
V +IGGG +G +A A+ G + EK LGG
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG 42
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 29.3 bits (64), Expect = 0.69, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV 47
VAVIG G G A V A G V+LY+ + A T IDG+
Sbjct: 8 VAVIGSGTMGAGIAEVAASHGHQVLLYD----ISAEALTRAIDGI 48
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes
At Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0P|A Chain A, D-amino Acic Oxidase In Complex With D-alanine And A
Partially Occupied Biatomic Species
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex
With Two Anthranylate Molecules
Length = 363
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKE 32
+V V+G G+ GL+SA +LA+ G V + ++
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARD 38
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
QV V+G G +G ++ KAG +V+L +K GG++
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS 160
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL---------GGHAKTITIDGVDLDLG 52
V+GGG GL L G+ L E D + G + I GVDL LG
Sbjct: 153 HATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQAIRDQGVDLRLG 212
Query: 53 FTLFNHATSPNTMEFFDSLGVDMKSSDMS--FSVSLDKGQGFE 93
L + T D+ G D + S++L G+ E
Sbjct: 213 TALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLE 255
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSL---------GGHAKTITIDGVDLDLG 52
V+GGG GL L G+ L E D + G + I GVDL LG
Sbjct: 153 HATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQAIRDQGVDLRLG 212
Query: 53 FTLFNHATSPNTMEFFDSLGVDMKSSDMS--FSVSLDKGQGFE 93
L + T D+ G D + S++L G+ E
Sbjct: 213 TALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLE 255
>pdb|4FFL|A Chain A, Pylc In Complex With L-Lysine
pdb|4FFM|A Chain A, Pylc In Complex With L-Lysine-Ne-D-Ornithine
(Cocrystallized With L- Lysine-Ne-D-Ornithine)
pdb|4FFN|A Chain A, Pylc In Complex With D-Ornithine And Amppnp
pdb|4FFO|A Chain A, Pylc In Complex With Phosphorylated D-Ornithine
pdb|4FFP|A Chain A, Pylc In Complex With L-Lysine-Ne-D-Ornithine
(Cocrystallized With L- Lysine And D-Ornithine)
Length = 363
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEK 31
+ ++GG + G +A++ KAG+ VVL +K
Sbjct: 4 ICLVGGKLQGFEAAYLSKKAGMKVVLVDK 32
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDS--------LGGHA-KTITIDGVDLDLG 52
V+GGG GL L G+ L E D + G A + I GVDL LG
Sbjct: 153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLG 212
Query: 53 FTLFNHATSPNTMEFFDSLGVDMKSSDMS--FSVSLDKGQGFE 93
L + T D+ G D + S++L G+ E
Sbjct: 213 TALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLE 255
>pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From
Thermus Thermophilus Hb8
Length = 232
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVL 28
QV ++G G SG +AF LA+ GV V L
Sbjct: 5 QVLIVGAGFSGAETAFWLAQKGVRVGL 31
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound
7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound
7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V ++GGG G+A A LA V ++ E+ D H + TI P
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTI----------------GP 72
Query: 63 NTMEFFDSLGV 73
+ME F GV
Sbjct: 73 RSMELFRRWGV 83
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
VIG G+ GLA A LA G +V++ E + +G
Sbjct: 9 VIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In
Complex With Tetrahydrofolate
Length = 443
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
+V V+G G++G +A+ L + GV V L+E
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In
Complex With Glutathione
Length = 443
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
+V V+G G++G +A+ L + GV V L+E
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKE--DSLGGHAKTITIDGVDLD-LGFTLFNHA 59
V +IGGG +G ++A+ L++ G+ ++L + + + +G + D LG
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPY---- 64
Query: 60 TSPNTMEFFDSL-GVDMKSSDMSFSVSLDKGQGFE 93
P E + + G+ + S DM +V G+GFE
Sbjct: 65 --PKGEELENKINGIKLYSPDMQ-TVWTVNGEGFE 96
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44
++ ++GGG+ GL A AGV V L E + L A T+
Sbjct: 147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATL 189
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44
++ ++GGG+ GL A AGV V L E + L A T+
Sbjct: 147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATL 189
>pdb|4FFR|A Chain A, Semet-Labeled Pylc (Remote)
Length = 363
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEK 31
+ ++GG + G +A++ KAG VVL +K
Sbjct: 4 ICLVGGKLQGFEAAYLSKKAGXKVVLVDK 32
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 3 VAVIGGGISGLASAFVLAKAGVD--VVLYEKEDSLGG 37
V ++G G SGL++A+V+AK D V + E + GG
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
With Fad And Sam
Length = 689
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLY 29
+A+IGGGI +A L + G V LY
Sbjct: 267 IAIIGGGIVSALTALALQRRGAVVTLY 293
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+G G G+A+ + LAK GV +L
Sbjct: 6 VIVVGAGSMGMAAGYYLAKQGVKTLL 31
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori
In Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori
In Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEK 31
+ A+IGGG +GL++ + GV + VL+EK
Sbjct: 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEK 33
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
+VAV+GGG + + A LA V L + D G IT++ HA +
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHRRD--GFRCAPITLE------------HAKN 190
Query: 62 PNTMEFFDSLGVDMKSSDMSFSVSL 86
+ +EF V+ D S SL
Sbjct: 191 NDKIEFLTPYVVEEIKGDASGVSSL 215
>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPH|H Chain H, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPI|G Chain G, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPI|H Chain H, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPJ|G Chain G, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 451
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44
V V+G GI+ + +L+ G V+ +K+D GG A ++T+
Sbjct: 12 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL 53
>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|2BCG|G Chain G, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 453
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITI 44
V V+G GI+ + +L+ G V+ +K+D GG A ++T+
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL 55
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
+V +IG G + +A LA+A + +LYE
Sbjct: 12 KVTIIGSGPAAHTAAIYLARAEIKPILYE 40
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Thioredoxin Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Thioredoxin Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Thioredoxin Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Thioredoxin Reductase 1 (trr1)
Length = 338
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
+V +IG G + +A LA+A + +LYE
Sbjct: 24 KVTIIGSGPAAHTAAIYLARAEIKPILYE 52
>pdb|4FK1|A Chain A, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|B Chain B, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|C Chain C, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|D Chain D, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
Length = 304
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYE 30
+ AVIG G +GL ++ VL +A + L++
Sbjct: 7 IDCAVIGAGPAGLNASLVLGRARKQIALFD 36
>pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate
Dehydrogenase From Sinorhizobium Meliloti
pdb|3V2H|B Chain B, The Crystal Structure Of D-Beta-Hydroxybutyrate
Dehydrogenase From Sinorhizobium Meliloti
Length = 281
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 2 QVAVIGGGISG--LASAFVLAKAGVDVVL--YEKEDSLGGHAKTITIDGVDLDLGFTLFN 57
+ AVI G SG LA A LAKAG ++VL + D + +T+T + L G L +
Sbjct: 26 KTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEI----RTVTDEVAGLSSGTVLHH 81
Query: 58 HATSPNTMEFFD 69
A E D
Sbjct: 82 PADXTKPSEIAD 93
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
V +IGGG GL A + G V + E+ D +G
Sbjct: 189 VTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG 222
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
Length = 389
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+G G G+A+ + LAK GV +L
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLL 31
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
Length = 389
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+G G G+A+ + LAK GV +L
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLL 31
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+G G G+A+ + LAK GV +L
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLL 31
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+G G G+A+ + LAK GV +L
Sbjct: 7 VIVVGAGSMGMAAGYQLAKQGVKTLL 32
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
V V+G G G+A+ + LAK GV +L
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLL 31
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATSP 62
V ++GGG G+A A LA V ++ + D H K TI P
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTI----------------GP 72
Query: 63 NTMEFFDSLGV 73
+ME F GV
Sbjct: 73 RSMELFRRWGV 83
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
V+G G GL +A LA G VVL EK H
Sbjct: 89 VVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH 122
>pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|A Chain A, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|D Chain D, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|C Chain C, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|F Chain F, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|E Chain E, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|H Chain H, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|G Chain G, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
Length = 271
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 2 QVAVIGGGISG--LASAFVLAKAGVDVVLYE-KEDSLGGHAKTI 42
+VA+I G G L ++ VLA+AG VVL + E L G A ++
Sbjct: 12 KVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV 55
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGH 38
V+G G GL +A LA G VVL EK H
Sbjct: 97 VVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH 130
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
Length = 302
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of
L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of
L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 3 VAVIGGGISGLASAFVLAKAGVD-VVLYEKEDSLGGHAKTITIDGV 47
V ++GGG GLA+ +L AG V+L E + AK + D V
Sbjct: 217 VVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHV 262
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
++ ++G G SG LA+ G V + ++ D +GG++
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
++ ++G G SG LA+ G V + ++ D +GG++
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
++ ++G G SG LA+ G V + ++ D +GG++
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
Length = 302
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEK-EDSLGGHAKTI 42
V VIGGG+ G A V A G VVL ++ ED L K I
Sbjct: 17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
Complex
Length = 550
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDL-DLGFTLFNHAT 60
++ ++GGG +G +A L KA L G A + D+ LG AT
Sbjct: 27 KILIVGGGTAGWMAASYLGKA------------LQGTADITLLQAPDIPTLG---VGEAT 71
Query: 61 SPN-TMEFFDSLGVD----MKSSDMSFSVSL 86
PN FFD LG+ M+ + S+ V++
Sbjct: 72 IPNLQTAFFDFLGIPEDEWMRECNASYKVAI 102
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 3 VAVIGGGISGLASAFVLAK-AGVDVVLYEKEDSLGGHA 39
V V+G G +GL++A+ ++K V V + E+ S GG A
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA 79
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 5 VIGGGISGLASAFVLAKAG--VDVVLYEKEDSLGGH-AKTITI 44
++GGG GLA+A+ LAK +V + EK GG+ A+ TI
Sbjct: 26 IVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNXARNTTI 68
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
V +IGGG GL A + G V E+ D +G
Sbjct: 189 VTIIGGGAIGLEXAETFVELGKKVRXIERNDHIG 222
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 5 VIGGGISGLASAFVLAK--AGVDVVLYEKEDSLGGH-AKTITI 44
++GGG GLA+A+ LAK +V + EK GG+ A+ TI
Sbjct: 26 IVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTI 68
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV 47
VAVIGGG S L A +L+ V L + D+ A+ I ++ V
Sbjct: 157 VAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF--KAQPIYVETV 199
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGV 47
VAVIGGG S L A +L+ V L + D+ A+ I ++ V
Sbjct: 157 VAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF--KAQPIYVETV 199
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 26/93 (27%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
++ VIGGG GL A KA + V L LD + T+
Sbjct: 151 RLVVIGGGYIGLEVAATAIKANMHVTL--------------------LDTAARVLERVTA 190
Query: 62 PNTMEFFDSL----GVDMKSSDM--SFSVSLDK 88
P F++ L GVD+++ F +S D+
Sbjct: 191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ 223
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 26/93 (27%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVDLDLGFTLFNHATS 61
++ VIGGG GL A KA + V L LD + T+
Sbjct: 150 RLVVIGGGYIGLEVAATAIKANMHVTL--------------------LDTAARVLERVTA 189
Query: 62 PNTMEFFDSL----GVDMKSSDM--SFSVSLDK 88
P F++ L GVD+++ F +S D+
Sbjct: 190 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ 222
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVL 28
VA+IGGG G A A AG++ L
Sbjct: 57 VAIIGGGTMGKAMAICFGLAGIETFL 82
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYE 30
VIGGG G+ASA A G V+L++
Sbjct: 47 VIGGGPGGMASAKEAAAHGARVLLFD 72
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHAKTITIDGVD 48
+A++G G G A A VLA+ G V L+ E H + +GV+
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESD---HVDEMQAEGVN 74
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVV 27
++ V+G G GL ++ + AK GVDV+
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKHGVDVL 38
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 2 QVAVIGGGISGLASAFVLA-KAGVDVVLYE 30
+V+VIG G +G +AF+LA K DVVL +
Sbjct: 10 KVSVIGAGFTGATTAFLLAQKELADVVLVD 39
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYE 30
+ VIGGG+ GL V A+ G +V + E
Sbjct: 177 MVVIGGGVIGLELGSVWARLGAEVTVVE 204
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
Phzs
Length = 402
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSL-----GGHAKTITIDGV-DLDLGF 53
+ + + G GI GL+ A L +AG+ V L E + G + + ++ + +L LG
Sbjct: 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGP 64
Query: 54 TLFNHATSPNTMEFFDSLGVDMKS 77
L A + + + D G + S
Sbjct: 65 ALAATAIPTHELRYIDQSGATVWS 88
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGV-DVVLYEKEDSL-----GGHAKTITIDGV-DLDLGF 53
+ + + G GI GL+ A L +AG+ V L E + G + + ++ + +L LG
Sbjct: 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGP 64
Query: 54 TLFNHATSPNTMEFFDSLGVDMKS 77
L A + + + D G + S
Sbjct: 65 ALAATAIPTHELRYIDQSGATVWS 88
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEK 31
V +IGGG +GL +A +A + ++ EK
Sbjct: 11 VVIIGGGPAGLTAAIYTGRAQLSTLILEK 39
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 2 QVAVIGGGISGLASAFVLAKAGVDVVLYE 30
+VAVIGGG SG+ +A LA V L E
Sbjct: 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLE 385
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
+ V V+G G SGL + + L + G V + E +GG
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
+ V V+G G SGL + + L + G V + E +GG
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
+ V V+G G SGL + + L + G V + E +GG
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1 MQVAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
+ V V+G G SGL + + L + G V + E +GG
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLGGHA 39
++G G +G A LA +G V++ ++ +GG+A
Sbjct: 34 IVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNA 68
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
V V+G GI+GL + G+ V +E +GG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
V V+G GI+GL + G+ V +E +GG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 3 VAVIGGGISGLASAFVLAKAGVDVVLYEKEDSLGG 37
V V+G GI+GL + G+ V +E +GG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From
Haemophilus Influenzae Rd
Length = 401
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 VIGGGISGLASAFVLAKAGVDVVLYEKEDSLG 36
+IG G +GL A LAK G V +++ +G
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,013,438
Number of Sequences: 62578
Number of extensions: 159024
Number of successful extensions: 836
Number of sequences better than 100.0: 276
Number of HSP's better than 100.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 304
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)